BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780526|ref|YP_003064939.1| putative transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] (223 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780526|ref|YP_003064939.1| putative transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040203|gb|ACT56999.1| putative transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 223 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 223/223 (100%), Positives = 223/223 (100%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV Sbjct: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK Sbjct: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL Sbjct: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN Sbjct: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 >gi|315122283|ref|YP_004062772.1| putative transcription regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495685|gb|ADR52284.1| putative transcription regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 223 Score = 365 bits (936), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 198/223 (88%), Positives = 209/223 (93%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M VLIDDRALVK+GYI+LF DDGVSLEGF+SLEFEEW QS A+EDVSAIEAFLIG GEKV Sbjct: 1 MLVLIDDRALVKNGYISLFSDDGVSLEGFHSLEFEEWFQSLAQEDVSAIEAFLIGTGEKV 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +ELPRIIR+ SQ+PLI ISDY SLQ TLDFFD GVDDVV+KPIHHREILARVAAI+RRLK Sbjct: 61 MELPRIIRSQSQMPLIAISDYSSLQKTLDFFDVGVDDVVHKPIHHREILARVAAIHRRLK 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V+N+R E GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL Sbjct: 121 VANHRVEIGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 FDE VEENVVESHISKLRKKLR KLGFDPVDSKRFLGYSIDWN Sbjct: 181 FDEEVEENVVESHISKLRKKLRKKLGFDPVDSKRFLGYSIDWN 223 >gi|307311573|ref|ZP_07591214.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307318928|ref|ZP_07598359.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|12057231|gb|AAG48153.1| transcriptional regulator [Sinorhizobium meliloti] gi|306895342|gb|EFN26097.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306899590|gb|EFN30219.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 223 Score = 304 bits (779), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 156/223 (69%), Positives = 182/223 (81%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDRALVKDGY +LFG +G+ GF+ EF EW+ S+A D+ A+EAFLIG+GE Sbjct: 1 MIVVVDDRALVKDGYASLFGREGIPSTGFDPREFGEWVSSAADSDIDAVEAFLIGQGEST 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L LPR IR S+ P+I +SD PSL+ TL FD GVDDVV KP+H REILARVAAI RRL Sbjct: 61 LTLPRAIRDRSRAPVIAMSDTPSLENTLALFDCGVDDVVRKPVHPREILARVAAIRRRLT 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + GPIRVF+DGRDPE+ GEVF LPRRERRILEYL+ANRG+RV+K+QIF+AIYG+ Sbjct: 121 AIANFTDIGPIRVFADGRDPEINGEVFALPRRERRILEYLVANRGRRVSKSQIFNAIYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 FDE VEENVVESHISKLRKKLR KLGFDP+DSKRFLGY IDWN Sbjct: 181 FDEDVEENVVESHISKLRKKLRKKLGFDPIDSKRFLGYCIDWN 223 >gi|15964431|ref|NP_384784.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15073608|emb|CAC45250.1| Response regulator of exponential growth motility [Sinorhizobium meliloti 1021] Length = 223 Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 155/223 (69%), Positives = 181/223 (81%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDRALVKDGY +LFG +G+ GF+ EF EW+ S+A D+ A+EAFLIG+GE Sbjct: 1 MIVVVDDRALVKDGYASLFGREGIPSTGFDPREFGEWVSSAADSDIDAVEAFLIGQGEST 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LPR IR S+ P+I +SD PSL+ TL FD GVDDVV KP+H REILARVAAI RRL Sbjct: 61 FTLPRAIRDRSRAPVIAMSDTPSLENTLALFDCGVDDVVRKPVHPREILARVAAIRRRLT 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + GPIRVF+DGRDPE+ GEVF LPRRERRILEYL+ANRG+RV+K+QIF+AIYG+ Sbjct: 121 AIANFTDIGPIRVFADGRDPEINGEVFALPRRERRILEYLVANRGRRVSKSQIFNAIYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 FDE VEENVVESHISKLRKKLR KLGFDP+DSKRFLGY IDWN Sbjct: 181 FDEDVEENVVESHISKLRKKLRKKLGFDPIDSKRFLGYCIDWN 223 >gi|227820874|ref|YP_002824844.1| two component transcriptional regulator, winged helix family [Sinorhizobium fredii NGR234] gi|227339873|gb|ACP24091.1| two component transcriptional regulator, winged helix family [Sinorhizobium fredii NGR234] Length = 223 Score = 301 bits (771), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 153/223 (68%), Positives = 181/223 (81%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++D+R LVKDGY +LFG +G+ GF+ +F EW+ ++A D+ A+EAFLIG+GE Sbjct: 1 MIVVVDERELVKDGYASLFGREGIPSTGFDPKDFGEWVNTAADSDIDAVEAFLIGQGESA 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LPR IR SQ P+I +SD PSL+ TL FD GVDDVV KP+H REILARVAAI RRLK Sbjct: 61 FSLPRAIRDRSQAPVIAMSDTPSLENTLALFDCGVDDVVRKPVHPREILARVAAIRRRLK 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + GPIRVF+DGRDPE+ GEVF LPRRERRILEYL+ANRG+RV+K+QIF+AIYG+ Sbjct: 121 AIANYTDIGPIRVFADGRDPEINGEVFALPRRERRILEYLVANRGRRVSKSQIFNAIYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 FDE VEENVVESHISKLRKKLR KLGFDP+DSKRFLGY IDWN Sbjct: 181 FDEDVEENVVESHISKLRKKLRKKLGFDPIDSKRFLGYCIDWN 223 >gi|150395502|ref|YP_001325969.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|150027017|gb|ABR59134.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 223 Score = 300 bits (769), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 153/223 (68%), Positives = 181/223 (81%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++D+RALVKDGY +LFG +G+ GF+ EF EW+ ++A D+ A+EAFLIG+G+ Sbjct: 1 MIVVVDERALVKDGYASLFGREGIPSSGFDPKEFGEWVSTAADSDIDAVEAFLIGQGDSA 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L LPR IR S+ P+I +SD PSL+ TL FD GVDDVV KP+H REILARVAAI RRL Sbjct: 61 LSLPRAIRDRSRAPVIAMSDTPSLENTLALFDCGVDDVVRKPVHPREILARVAAIRRRLT 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + GPIRVF+DGRDPE+ GEVF LPRRERRILEYL+ANRG+RV+K QIF+AIYG+ Sbjct: 121 AIANFTDIGPIRVFADGRDPEINGEVFALPRRERRILEYLVANRGRRVSKAQIFNAIYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 FDE VEENVVESHISKLRKKLR KLGFDP+DSKRFLGY IDWN Sbjct: 181 FDEDVEENVVESHISKLRKKLRKKLGFDPIDSKRFLGYCIDWN 223 >gi|239834427|ref|ZP_04682755.1| Sensory transduction protein regX3 [Ochrobactrum intermedium LMG 3301] gi|239822490|gb|EEQ94059.1| Sensory transduction protein regX3 [Ochrobactrum intermedium LMG 3301] Length = 227 Score = 278 bits (710), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 134/225 (59%), Positives = 171/225 (76%), Gaps = 4/225 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR +V +GY + FG +G++ GF +F+EW++S ++D+ A+EAFLIG+ Sbjct: 1 MIVVVDDRDIVTEGYSSWFGREGITTTGFTPTDFDEWVESVPQQDIMAVEAFLIGECADQ 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LP IR + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR Sbjct: 61 HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120 Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S ++ E GPIRVFSDGRDP++ G FPLPRRERRILEYL+ANRG+R+ K QIFSA Sbjct: 121 ASAASSDDGTELGPIRVFSDGRDPQINGVDFPLPRRERRILEYLIANRGRRLNKAQIFSA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 IYG+FD VEENVVESHISKLRKKLR ++GFDP+DSKRFLGY I+ Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLREQMGFDPIDSKRFLGYCIN 225 >gi|153011509|ref|YP_001372723.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151563397|gb|ABS16894.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] Length = 227 Score = 277 bits (708), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 134/225 (59%), Positives = 171/225 (76%), Gaps = 4/225 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR +V +GY + FG +G++ GF +F+EW++S ++D+ A+EAFLIG+ Sbjct: 1 MIVVVDDRDIVTEGYSSWFGREGITTTGFTPTDFDEWVESVPQQDIMAVEAFLIGECADQ 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LP IR + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR Sbjct: 61 HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120 Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S ++ E GPIRVFSDGRDP++ G FPLPRRERRILEYL+ANRG+R+ K QIFSA Sbjct: 121 ASAASNDSGTELGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKAQIFSA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 IYG+FD VEENVVESHISKLRKKLR ++GFDP+DSKRFLGY I+ Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLREQMGFDPIDSKRFLGYCIN 225 >gi|306841275|ref|ZP_07473986.1| Protein petR [Brucella sp. BO2] gi|306288677|gb|EFM60008.1| Protein petR [Brucella sp. BO2] Length = 227 Score = 277 bits (708), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 135/225 (60%), Positives = 169/225 (75%), Gaps = 4/225 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR +V +GY + FG +G++ GF +F+EW++S +D+ AIEAFLIG+ Sbjct: 1 MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LP IR + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR Sbjct: 61 HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120 Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + + GPIRVFSDGRDP++ G FPLPRRERRILEYL+ANRG+R+ K QIFSA Sbjct: 121 ASATSGTDGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 IYG+FD VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+ Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225 >gi|15887918|ref|NP_353599.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15155512|gb|AAK86384.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 223 Score = 277 bits (708), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 151/223 (67%), Positives = 185/223 (82%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++D+R LVKDGY +LFG +G+ GF+ +EF EW+ ++A D++A+EAFLIG+G++ Sbjct: 1 MIVVVDERELVKDGYTSLFGREGIPSTGFDPVEFGEWVSTAADSDLAAVEAFLIGQGDRS 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LP+ IR + P+I +SD PSL+ TL FDSGVDDVV KP+H REILAR AAI RRL+ Sbjct: 61 FSLPKAIRDRTTAPVIAVSDQPSLEATLALFDSGVDDVVRKPVHPREILARAAAIRRRLQ 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V +N + GPIRVFSDGRDPEV GEVF LPRRERRILEYL+ANRG+RV+K+QIF+AIYG+ Sbjct: 121 VISNFTDAGPIRVFSDGRDPEVCGEVFALPRRERRILEYLIANRGRRVSKSQIFNAIYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 FD+ VEENVVESHISKLRKKLR KLG+DPVDSKRFLGYSIDW Sbjct: 181 FDDDVEENVVESHISKLRKKLRKKLGYDPVDSKRFLGYSIDWQ 223 >gi|325291960|ref|YP_004277824.1| Response regulator of exponential growth motility [Agrobacterium sp. H13-3] gi|325059813|gb|ADY63504.1| Response regulator of exponential growth motility [Agrobacterium sp. H13-3] Length = 223 Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 151/223 (67%), Positives = 185/223 (82%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++D+R LVKDGY +LFG +G+ GF+ +EF EW+ ++A D++A+EAFLIG+G++ Sbjct: 1 MIVVVDERELVKDGYTSLFGREGIPSTGFDPVEFGEWVSTAADSDLAAVEAFLIGQGDRS 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LP+ IR + P+I +SD PSL++TL FDSGVDDVV KP+H REILAR AAI RRL+ Sbjct: 61 FSLPKAIRDRTTAPVIAVSDQPSLESTLALFDSGVDDVVRKPVHPREILARAAAIRRRLQ 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V +N + GPIRVFSDGRDPEV GEVF LPRRERRILEYL+ANRG+RV+K QIF+AIYG+ Sbjct: 121 VISNFTDAGPIRVFSDGRDPEVGGEVFALPRRERRILEYLIANRGRRVSKAQIFNAIYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 FD+ VEENVVESHISKLRKKLR KLG+DPVDSKRFLGYSIDW Sbjct: 181 FDDDVEENVVESHISKLRKKLRKKLGYDPVDSKRFLGYSIDWQ 223 >gi|17988502|ref|NP_541135.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|23500855|ref|NP_700295.1| transcriptional regulator [Brucella suis 1330] gi|62317958|ref|YP_223811.1| transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|83269935|ref|YP_419226.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|163845458|ref|YP_001623113.1| hypothetical protein BSUIS_B1367 [Brucella suis ATCC 23445] gi|225686886|ref|YP_002734858.1| protein petR [Brucella melitensis ATCC 23457] gi|254691610|ref|ZP_05154864.1| Protein petR [Brucella abortus bv. 6 str. 870] gi|254699234|ref|ZP_05161062.1| Protein petR [Brucella abortus bv. 2 str. 86/8/59] gi|256015899|ref|YP_003105908.1| transcriptional regulator, OmpR family [Brucella microti CCM 4915] gi|256042867|ref|ZP_05445813.1| Protein petR [Brucella melitensis bv. 1 str. Rev.1] gi|256112176|ref|ZP_05453097.1| Protein petR [Brucella melitensis bv. 3 str. Ether] gi|256256797|ref|ZP_05462333.1| Protein petR [Brucella abortus bv. 9 str. C68] gi|256261977|ref|ZP_05464509.1| flagellar transcriptional regulator ftcR [Brucella melitensis bv. 2 str. 63/9] gi|260544143|ref|ZP_05819964.1| response regulator receiver [Brucella abortus NCTC 8038] gi|260564104|ref|ZP_05834589.1| flagellar transcriptional regulator ftcR [Brucella melitensis bv. 1 str. 16M] gi|260757241|ref|ZP_05869589.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260763734|ref|ZP_05876062.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260883045|ref|ZP_05894659.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|265989302|ref|ZP_06101859.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265993602|ref|ZP_06106159.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|294852969|ref|ZP_06793641.1| flagellar transcriptional regulator ftcR [Brucella sp. NVSL 07-0026] gi|297250150|ref|ZP_06933851.1| flagellar transcriptional regulator ftcR [Brucella abortus bv. 5 str. B3196] gi|306845420|ref|ZP_07477994.1| Protein petR [Brucella sp. BO1] gi|75505045|sp|Q576I4|FTCR_BRUAB RecName: Full=Flagellar transcriptional regulator ftcR gi|81846997|sp|Q8FUS8|FTCR_BRUSU RecName: Full=Flagellar transcriptional regulator ftcR gi|81850829|sp|Q8YDL7|FTCR_BRUME RecName: Full=Flagellar transcriptional regulator ftcR gi|123740838|sp|Q2YJF8|FTCR_BRUA2 RecName: Full=Flagellar transcriptional regulator ftcR gi|17984294|gb|AAL53399.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|23464520|gb|AAN34300.1| transcriptional regulator [Brucella suis 1330] gi|62198151|gb|AAX76450.1| transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|82940209|emb|CAJ13265.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Brucella melitensis biovar Abortus 2308] gi|163676181|gb|ABY40291.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|225642991|gb|ACO02904.1| Protein petR [Brucella melitensis ATCC 23457] gi|255998559|gb|ACU50246.1| transcriptional regulator, OmpR family [Brucella microti CCM 4915] gi|260097414|gb|EEW81288.1| response regulator receiver [Brucella abortus NCTC 8038] gi|260151747|gb|EEW86840.1| flagellar transcriptional regulator ftcR [Brucella melitensis bv. 1 str. 16M] gi|260674151|gb|EEX60972.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260677349|gb|EEX64170.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872573|gb|EEX79642.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|262764472|gb|EEZ10504.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|262999971|gb|EEZ12661.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263091461|gb|EEZ15997.1| flagellar transcriptional regulator ftcR [Brucella melitensis bv. 2 str. 63/9] gi|294818624|gb|EFG35624.1| flagellar transcriptional regulator ftcR [Brucella sp. NVSL 07-0026] gi|297174019|gb|EFH33383.1| flagellar transcriptional regulator ftcR [Brucella abortus bv. 5 str. B3196] gi|306274163|gb|EFM55979.1| Protein petR [Brucella sp. BO1] gi|326411304|gb|ADZ68368.1| protein PetR [Brucella melitensis M28] gi|326554593|gb|ADZ89232.1| protein PetR [Brucella melitensis M5-90] Length = 227 Score = 276 bits (706), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 135/225 (60%), Positives = 168/225 (74%), Gaps = 4/225 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR +V +GY + FG +G++ GF +F+EW++S +D+ AIEAFLIG+ Sbjct: 1 MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LP IR + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR Sbjct: 61 HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + GPIRVFSDGRDP++ G FPLPRRERRILEYL+ANRG+R+ K QIFSA Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 IYG+FD VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+ Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225 >gi|306840137|ref|ZP_07472922.1| Protein petR [Brucella sp. NF 2653] gi|306404782|gb|EFM61076.1| Protein petR [Brucella sp. NF 2653] Length = 253 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 135/225 (60%), Positives = 169/225 (75%), Gaps = 4/225 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR +V +GY + FG +G++ GF +F+EW++S +D+ AIEAFLIG+ Sbjct: 27 MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 86 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LP IR + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR Sbjct: 87 HRLPARIRERYKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 146 Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + + GPIRVFSDGRDP++ G FPLPRRERRILEYL+ANRG+R+ K QIFSA Sbjct: 147 ASATSGTDGTQLGPIRVFSDGRDPQINGINFPLPRRERRILEYLIANRGRRLNKVQIFSA 206 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 IYG+FD VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+ Sbjct: 207 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 251 >gi|189023209|ref|YP_001932950.1| Response regulator receiver [Brucella abortus S19] gi|237817505|ref|ZP_04596495.1| Protein petR [Brucella abortus str. 2308 A] gi|189021783|gb|ACD74504.1| Response regulator receiver [Brucella abortus S19] gi|237787260|gb|EEP61478.1| Protein petR [Brucella abortus str. 2308 A] Length = 258 Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 135/225 (60%), Positives = 168/225 (74%), Gaps = 4/225 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR +V +GY + FG +G++ GF +F+EW++S +D+ AIEAFLIG+ Sbjct: 32 MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 91 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LP IR + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR Sbjct: 92 HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 151 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + GPIRVFSDGRDP++ G FPLPRRERRILEYL+ANRG+R+ K QIFSA Sbjct: 152 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 211 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 IYG+FD VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+ Sbjct: 212 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 256 >gi|254720772|ref|ZP_05182583.1| Protein petR [Brucella sp. 83/13] gi|265985830|ref|ZP_06098565.1| two component transcriptional regulator [Brucella sp. 83/13] gi|264664422|gb|EEZ34683.1| two component transcriptional regulator [Brucella sp. 83/13] Length = 227 Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 135/225 (60%), Positives = 169/225 (75%), Gaps = 4/225 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR +V +GY + FG +G++ GF +F+EW++S +D+ AIEAFLIG+ Sbjct: 1 MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LP IR + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR Sbjct: 61 HRLPARIRERYKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120 Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + + GPIRVFSDGRDP++ G FPLPRRERRILEYL+ANRG+R+ K QIFSA Sbjct: 121 ASATSGTDGTQLGPIRVFSDGRDPQINGINFPLPRRERRILEYLIANRGRRLNKVQIFSA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 IYG+FD VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+ Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225 >gi|254695094|ref|ZP_05156922.1| Protein petR [Brucella abortus bv. 3 str. Tulya] gi|261215445|ref|ZP_05929726.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260917052|gb|EEX83913.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] Length = 227 Score = 275 bits (704), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 135/225 (60%), Positives = 168/225 (74%), Gaps = 4/225 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR +V +GY + FG +G++ GF +F+EW++S +D+ AIEAFLIG+ Sbjct: 1 MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LP IR + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR Sbjct: 61 HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + GPIRVFSDGRDP++ G FPLPRRERRILEYL+ANRG+R+ K QIFSA Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 IYG+FD VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+ Sbjct: 181 IYGIFDGEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225 >gi|254699263|ref|ZP_05161091.1| Protein petR [Brucella suis bv. 5 str. 513] gi|261749703|ref|ZP_05993412.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261739456|gb|EEY27382.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] Length = 227 Score = 275 bits (703), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 134/225 (59%), Positives = 168/225 (74%), Gaps = 4/225 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++D+R +V +GY + FG +G++ GF +F+EW++S +D+ AIEAFLIG+ Sbjct: 1 MIVVVDNRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LP IR + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR Sbjct: 61 HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + GPIRVFSDGRDP++ G FPLPRRERRILEYL+ANRG+R+ K QIFSA Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 IYG+FD VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+ Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225 >gi|254706496|ref|ZP_05168324.1| Protein petR [Brucella pinnipedialis M163/99/10] gi|254711219|ref|ZP_05173030.1| Protein petR [Brucella pinnipedialis B2/94] gi|254711819|ref|ZP_05173630.1| Protein petR [Brucella ceti M644/93/1] gi|254714888|ref|ZP_05176699.1| Protein petR [Brucella ceti M13/05/1] gi|256030152|ref|ZP_05443766.1| Protein petR [Brucella pinnipedialis M292/94/1] gi|256158331|ref|ZP_05456235.1| Protein petR [Brucella ceti M490/95/1] gi|256252735|ref|ZP_05458271.1| Protein petR [Brucella ceti B1/94] gi|260166796|ref|ZP_05753607.1| transcriptional regulator, OmpR family protein [Brucella sp. F5/99] gi|261216578|ref|ZP_05930859.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261219814|ref|ZP_05934095.1| two component transcriptional regulator [Brucella ceti B1/94] gi|261313949|ref|ZP_05953146.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261318811|ref|ZP_05958008.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261319448|ref|ZP_05958645.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261756174|ref|ZP_05999883.1| response regulator receiver [Brucella sp. F5/99] gi|265987182|ref|ZP_06099739.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265996845|ref|ZP_06109402.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|260918398|gb|EEX85051.1| two component transcriptional regulator [Brucella ceti B1/94] gi|260921667|gb|EEX88235.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261292138|gb|EEX95634.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261298034|gb|EEY01531.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261302975|gb|EEY06472.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261736158|gb|EEY24154.1| response regulator receiver [Brucella sp. F5/99] gi|262551142|gb|EEZ07303.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|264659379|gb|EEZ29640.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] Length = 227 Score = 274 bits (700), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 134/225 (59%), Positives = 167/225 (74%), Gaps = 4/225 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR +V +GY + FG +G++ GF +F+EW++S +D+ AIEAFLIG+ Sbjct: 1 MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LP IR + P+I ++D PSL+ L+ F SGVDDVV KP+H REILAR+ AI RR Sbjct: 61 HRLPARIRERCKAPVIAVNDRPSLEHILELFQSGVDDVVRKPVHVREILARINAIRRRAG 120 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + GPIRVFSDGRDP++ G FPLPRRERRILEYL+ANRG+R+ K QIFSA Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 IYG+FD VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+ Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225 >gi|225628429|ref|ZP_03786463.1| Protein petR [Brucella ceti str. Cudo] gi|225616275|gb|EEH13323.1| Protein petR [Brucella ceti str. Cudo] Length = 258 Score = 273 bits (699), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 134/225 (59%), Positives = 167/225 (74%), Gaps = 4/225 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR +V +GY + FG +G++ GF +F+EW++S +D+ AIEAFLIG+ Sbjct: 32 MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 91 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LP IR + P+I ++D PSL+ L+ F SGVDDVV KP+H REILAR+ AI RR Sbjct: 92 HRLPARIRERCKAPVIAVNDRPSLEHILELFQSGVDDVVRKPVHVREILARINAIRRRAG 151 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + GPIRVFSDGRDP++ G FPLPRRERRILEYL+ANRG+R+ K QIFSA Sbjct: 152 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 211 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 IYG+FD VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+ Sbjct: 212 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 256 >gi|161621183|ref|YP_001595069.1| protein petR [Brucella canis ATCC 23365] gi|254702385|ref|ZP_05164213.1| protein petR [Brucella suis bv. 3 str. 686] gi|260568713|ref|ZP_05839182.1| response regulator receiver [Brucella suis bv. 4 str. 40] gi|261752947|ref|ZP_05996656.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|161337994|gb|ABX64298.1| Protein petR [Brucella canis ATCC 23365] gi|260155378|gb|EEW90459.1| response regulator receiver [Brucella suis bv. 4 str. 40] gi|261742700|gb|EEY30626.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] Length = 227 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 134/225 (59%), Positives = 167/225 (74%), Gaps = 4/225 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR +V +GY + FG +G++ GF +F+EW++S +D+ AIEAFLIG+ Sbjct: 1 MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LP IR + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR Sbjct: 61 HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + G IRVFSDGRDP++ G FPLPRRERRILEYL+ANRG+R+ K QIFSA Sbjct: 121 ASATSGADGTQLGSIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 IYG+FD VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+ Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225 >gi|254731635|ref|ZP_05190213.1| Protein petR [Brucella abortus bv. 4 str. 292] gi|260759394|ref|ZP_05871742.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260669712|gb|EEX56652.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] Length = 227 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 134/225 (59%), Positives = 167/225 (74%), Gaps = 4/225 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR +V +GY + FG +G++ GF +F+EW++S +D+ AIEAFLIG+ Sbjct: 1 MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LP IR + P+I ++D PSL+ TL+ F SGVDDVV KP+H REILAR+ AI RR Sbjct: 61 HRLPARIRERCKAPVIAVNDRPSLEHTLELFQSGVDDVVRKPVHVREILARINAIRRRAG 120 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + GPIRVFSDGRDP++ G FPLPRRERRILEYL+ANRG+R+ K QIFSA Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFSA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 IYG+FD VEENVVESHISKLRKKLR +LGFD +DSKRFLGY I+ Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDLIDSKRFLGYCIN 225 >gi|148558321|ref|YP_001258005.1| response regulator receiver [Brucella ovis ATCC 25840] gi|189036229|sp|A5VW00|FTCR_BRUO2 RecName: Full=Flagellar transcriptional regulator ftcR gi|148369606|gb|ABQ62478.1| response regulator receiver:Transcriptional regulatory protein, C terminal domain [Brucella ovis ATCC 25840] Length = 227 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 133/225 (59%), Positives = 166/225 (73%), Gaps = 4/225 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR +V +GY + FG +G++ GF +F+EW++S +D+ AIEAFLIG+ Sbjct: 1 MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LP IR + P+I ++D PSL+ TL+ F GVDDVV KP+H REILAR+ AI RR Sbjct: 61 HRLPARIRERCKAPVIAVNDRPSLEHTLELFQFGVDDVVRKPVHVREILARINAIRRRAG 120 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + GPIRVFSDGRDP++ G FP PRRERRILEYL+ANRG+R+ K QIFSA Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPFPRRERRILEYLIANRGRRLNKVQIFSA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 IYG+FD VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+ Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225 >gi|256059803|ref|ZP_05449998.1| response regulator receiver [Brucella neotomae 5K33] gi|261323783|ref|ZP_05962980.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261299763|gb|EEY03260.1| two component transcriptional regulator [Brucella neotomae 5K33] Length = 227 Score = 271 bits (693), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 133/225 (59%), Positives = 166/225 (73%), Gaps = 4/225 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR +V +GY + FG +G++ GF +F+EW++S +D+ AIEAFLIG+ Sbjct: 1 MIVVVDDRDMVTEGYSSWFGREGITTTGFTPTDFDEWVESVPEQDIMAIEAFLIGECADQ 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LP IR + P+I ++D PSL+ TL+ F GVDDVV KP+H REILAR+ AI RR Sbjct: 61 HRLPARIRERCKAPVIAVNDRPSLEHTLELFQFGVDDVVRKPVHVREILARINAIRRRAG 120 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + GPIRVFSDGRDP++ G FPLPRRERRILEYL+ANRG+R+ K QIF A Sbjct: 121 ASATSGADGTQLGPIRVFSDGRDPQINGIDFPLPRRERRILEYLIANRGRRLNKVQIFRA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 IYG+FD VEENVVESHISKLRKKLR +LGFDP+DSKRFLGY I+ Sbjct: 181 IYGIFDSEVEENVVESHISKLRKKLRGQLGFDPIDSKRFLGYCIN 225 >gi|323136985|ref|ZP_08072065.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] gi|322397746|gb|EFY00268.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] Length = 237 Score = 265 bits (676), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 126/218 (57%), Positives = 166/218 (76%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 MF+++D+R LV +GY FG +G++ GF +F +W+ S+ DV AIEAFLIG+ + Sbjct: 1 MFIIVDERDLVTNGYACRFGQEGIASAGFRPGQFRDWVDSAVEGDVQAIEAFLIGECPER 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+PR+IR SQ P+I +++ PSL+ TL F +GVDDVV KP+H REILARV AI RR + Sbjct: 61 EEIPRLIRRRSQAPVIAMNEAPSLEQTLGLFSAGVDDVVRKPVHVREILARVHAIRRRAE 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + A G I+VF +G DP V GEV LPRRERRILEYL+ NRG+R+ K+QIF+A+YGL Sbjct: 121 ARQDCAAVGGIQVFFNGSDPVVNGEVLALPRRERRILEYLVVNRGRRLTKSQIFNAVYGL 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD+ VEENV+ESHISKLRKKLR +LG+DP++S+RFLGY Sbjct: 181 FDDDVEENVIESHISKLRKKLRARLGYDPIESQRFLGY 218 >gi|90418366|ref|ZP_01226278.1| transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90338038|gb|EAS51689.1| transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 223 Score = 264 bits (674), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 128/220 (58%), Positives = 167/220 (75%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++D+R LV DGY ++FG +GVS GF + EF +W++++ D+SA+EAFL+G + Sbjct: 1 MIVVVDNRELVTDGYESMFGREGVSAAGFKADEFRDWVETAPESDLSAVEAFLLGDFDDR 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 PR+IRA S+ P+I +S+ +L TLD F +GVDDVV KP+H +EILARV AI RR + Sbjct: 61 TICPRLIRARSKAPMIALSEGRNLDGTLDLFAAGVDDVVAKPVHVKEILARVGAIRRRNE 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + R G I V+ DGRD EV G+ LPRRERRILEYL+ANRG+RV+K Q+FSAIYG+ Sbjct: 121 TEDARTVVGEISVYQDGRDAEVAGKPMALPRRERRILEYLVANRGRRVSKQQLFSAIYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FDE VEENV+ESHISKLRKKL+ +LG+DPV SKR+LGY I Sbjct: 181 FDENVEENVIESHISKLRKKLKMRLGYDPVSSKRYLGYGI 220 >gi|209547945|ref|YP_002279862.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533701|gb|ACI53636.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 223 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 155/222 (69%), Positives = 180/222 (81%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++D+R LVKDGY +LFG +G+ GF+ EF EW+Q++A D++A+EAFLIG+G++ Sbjct: 1 MIVVVDERELVKDGYTSLFGREGIPSTGFDPAEFGEWVQTAADSDIAAVEAFLIGQGQRS 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LELPR IR S P+I +SD PSL+ TL FD GVDDVV KP+H REILAR AAI RRLK Sbjct: 61 LELPRAIRDRSMAPVIAVSDQPSLENTLALFDCGVDDVVRKPVHPREILARAAAIRRRLK 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N E G IRVFSDGRDPE+ GEVF LPRRERRILEYL+ANRG+RV KTQIF+AIYG+ Sbjct: 121 AIANYTEIGGIRVFSDGRDPEINGEVFALPRRERRILEYLIANRGRRVTKTQIFNAIYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 FDE VEENVVESHISKLRKKLR KLG DPVDSKRFLGY IDW Sbjct: 181 FDEEVEENVVESHISKLRKKLRKKLGVDPVDSKRFLGYCIDW 222 >gi|217976239|ref|YP_002360386.1| putative two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] gi|217501615|gb|ACK49024.1| putative two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] Length = 224 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 127/221 (57%), Positives = 163/221 (73%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V+ID+R +V GY + FG++GVS GF EF EW+ + A D+ A+EAFL+G Sbjct: 1 MLVIIDEREIVTAGYASRFGNEGVSSAGFCPEEFREWVATVAEGDLGAVEAFLLGDCRDR 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 P++I+ S+ P+I ++D P L+ TLD F +GVDDVV KPIH REILARV AI RR Sbjct: 61 QAYPKMIKERSRAPVIAMNDAPCLEQTLDLFAAGVDDVVRKPIHVREILARVGAIKRRCD 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G +RVF DGRDPE+ G V LPRRERRILEYL+ NRG+RV+K QIF++IYG+ Sbjct: 121 IEVDSVALGDLRVFFDGRDPELNGRVLALPRRERRILEYLVNNRGRRVSKAQIFNSIYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FDE VEENVVESHISKLRKKLR +LG+DP++S R+LGY +D Sbjct: 181 FDENVEENVVESHISKLRKKLRRQLGYDPINSVRYLGYRLD 221 >gi|222084884|ref|YP_002543413.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221722332|gb|ACM25488.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 223 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 154/223 (69%), Positives = 182/223 (81%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++D+R LVKDGY +LFG +G+ GF+ EF EW+ ++A D++A+EAFLIG+G+ V Sbjct: 1 MIVVVDERELVKDGYTSLFGREGIPSTGFDPREFGEWVVTAADGDIAAVEAFLIGQGQHV 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ELPR IR S P+I +SD PSL++TL FD GVDDVV KP+H REILAR AAI RRLK Sbjct: 61 HELPRAIRDRSAAPVIAVSDQPSLESTLALFDCGVDDVVRKPVHPREILARAAAIRRRLK 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N + GPIRVFSDGRDPEV GEVF LPRRERRILEYL++NRG+RV KTQIF+AIYG+ Sbjct: 121 AISNYTDIGPIRVFSDGRDPEVNGEVFALPRRERRILEYLISNRGRRVTKTQIFNAIYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 FDE VEENVVESHISKLRKKLR +LGFDPVDSKRFLGY IDW Sbjct: 181 FDEEVEENVVESHISKLRKKLRKRLGFDPVDSKRFLGYCIDWT 223 >gi|319898655|ref|YP_004158748.1| flagellar transcriptional regulator ftcR [Bartonella clarridgeiae 73] gi|319402619|emb|CBI76164.1| Flagellar transcriptional regulator ftcR [Bartonella clarridgeiae 73] Length = 229 Score = 261 bits (666), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 124/224 (55%), Positives = 167/224 (74%), Gaps = 4/224 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR LV DGY LF +GV+ G +F EW+ +++ ++S+IEA L+GK E Sbjct: 1 MIVVVDDRKLVTDGYATLFSREGVAATGLPPSDFSEWISTASDNEISSIEAILLGKCENQ 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +ELP+ IR +S P++ +++ L T++ F SG+DDV+ KPIH REILAR+ AI RR+ Sbjct: 61 IELPKEIRNYSSAPILAMTETNILSHTIELFQSGMDDVLRKPIHVREILARIGAIRRRIG 120 Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N E GPI VF+DGRDP++ G LPRRERRILEYL+AN GKRV KTQIF+A Sbjct: 121 NNIRGINTAIEVGPISVFNDGRDPQINGIELALPRRERRILEYLIANAGKRVNKTQIFNA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG+FD+A+EENV+ESHISKLRKKL+ K+G+D +DSKRFLGYS+ Sbjct: 181 VYGIFDDAIEENVIESHISKLRKKLKAKIGYDIIDSKRFLGYSL 224 >gi|182680287|ref|YP_001834433.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636170|gb|ACB96944.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 225 Score = 260 bits (665), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 125/221 (56%), Positives = 165/221 (74%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V+ID+R +V GY++ F ++G+S GF EF +W++S+A D+ A+EAFL+G ++ Sbjct: 1 MLVIIDEREIVTSGYVSRFANEGISSTGFRPEEFGDWVRSAAETDLFAVEAFLLGDCQER 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LP+IIR S PLI ++D SL+ TL F +G DDVV KP+H REILARV AI RR + Sbjct: 61 QGLPKIIRERSPAPLIALNDTASLEQTLSLFAAGADDVVRKPVHVREILARVGAIKRRHE 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G +RVF DGRDPEV+G LPRRERRILEYL+ NRG+RV+KTQIF++IYG+ Sbjct: 121 ERQDSTLIGDLRVFFDGRDPEVKGSTLQLPRRERRILEYLVNNRGRRVSKTQIFNSIYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FDE +EENVVESHISKLRKKLR +LG+DP++S R+LGY + Sbjct: 181 FDEKIEENVVESHISKLRKKLRRQLGYDPINSVRYLGYCFE 221 >gi|86356329|ref|YP_468221.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86280431|gb|ABC89494.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 223 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 153/222 (68%), Positives = 179/222 (80%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++D+R LVKDGY +LFG +G+ GF+ EF EW+Q++A D++A+EAFLIG+G++ Sbjct: 1 MIVVVDERELVKDGYTSLFGREGIPSTGFDPSEFGEWVQTAADSDIAAVEAFLIGQGQRS 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ELPR IR S P+I +SD PSL+ TL FD GVDDVV KP+H REILAR AAI RRLK Sbjct: 61 FELPRAIRDRSMAPVIAVSDQPSLENTLALFDCGVDDVVRKPVHPREILARAAAIRRRLK 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + G IRVFSDGRDPE+ GEVF LPRRERRILEYL+ANRG+RV KTQIF+AIYG+ Sbjct: 121 AIANYTDVGGIRVFSDGRDPEINGEVFALPRRERRILEYLIANRGRRVTKTQIFNAIYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 FDE VEENVVESHISKLRKKLR KLG DPVDSKRFLGY IDW Sbjct: 181 FDEEVEENVVESHISKLRKKLRKKLGVDPVDSKRFLGYCIDW 222 >gi|190890381|ref|YP_001976923.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|218461960|ref|ZP_03502051.1| probable two-component response regulator protein [Rhizobium etli Kim 5] gi|218509842|ref|ZP_03507720.1| probable two-component response regulator protein [Rhizobium etli Brasil 5] gi|218674740|ref|ZP_03524409.1| probable two-component response regulator protein [Rhizobium etli GR56] gi|190695660|gb|ACE89745.1| probable two-component response regulator protein [Rhizobium etli CIAT 652] Length = 223 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 153/222 (68%), Positives = 180/222 (81%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++D+R LVKDGY +LFG +G+ GF+ EF +W+Q++A D++A+EAFLIG+G++ Sbjct: 1 MIVVVDERELVKDGYTSLFGREGIPSTGFDPSEFGDWVQTAADSDIAAVEAFLIGQGQRS 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LELPR IR S P+I +SD PSL+ TL FD GVDDVV KP+H REILAR AAI RRLK Sbjct: 61 LELPRAIRDRSMAPVIAVSDQPSLENTLALFDCGVDDVVRKPVHPREILARAAAIRRRLK 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + G IRVFSDGRDPE+ GEVF LPRRERRILEYL+ANRG+RV KTQIF+AIYG+ Sbjct: 121 AIANYTDIGGIRVFSDGRDPEINGEVFALPRRERRILEYLIANRGRRVTKTQIFNAIYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 FDE VEENVVESHISKLRKKLR KLG DPVDSKRFLGY IDW Sbjct: 181 FDEEVEENVVESHISKLRKKLRKKLGVDPVDSKRFLGYCIDW 222 >gi|163758030|ref|ZP_02165118.1| putative transcription regulator protein [Hoeflea phototrophica DFL-43] gi|162284319|gb|EDQ34602.1| putative transcription regulator protein [Hoeflea phototrophica DFL-43] Length = 200 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 139/195 (71%), Positives = 164/195 (84%) Query: 28 GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTT 87 GF+S EF EW+ ++A D+ A+EAFLIG+GE L+LPR IR SQ P+I +SD PSL++T Sbjct: 5 GFDSFEFGEWVNTAADSDLDAVEAFLIGQGELTLDLPRAIRDRSQAPVIAVSDTPSLEST 64 Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF 147 L FFDSGVDDVV KP+H REI+AR AAI RRLK +N + GPIRVFSDGRDPE++G +F Sbjct: 65 LAFFDSGVDDVVRKPVHPREIMARAAAIRRRLKALSNHTDVGPIRVFSDGRDPELEGRIF 124 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 LPRRERRILEYL+ANRG+RV K QIF+AIYG+FDE VEENVVESHISKLRKKLR +LGF Sbjct: 125 ALPRRERRILEYLVANRGRRVTKQQIFNAIYGIFDEDVEENVVESHISKLRKKLRKRLGF 184 Query: 208 DPVDSKRFLGYSIDW 222 DP+DSKRFLGY IDW Sbjct: 185 DPIDSKRFLGYLIDW 199 >gi|116250499|ref|YP_766337.1| two-component regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|241203123|ref|YP_002974219.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115255147|emb|CAK06221.1| regulator of flagellar and motility genes [Rhizobium leguminosarum bv. viciae 3841] gi|240857013|gb|ACS54680.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|262283890|gb|ACY40753.1| Rem [Rhizobium leguminosarum bv. viciae] Length = 223 Score = 258 bits (659), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 153/222 (68%), Positives = 178/222 (80%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++D+R LVKDGY +LFG +G+ GF+ EF EW+Q++A D++A+EAFLIG+G++ Sbjct: 1 MIVVVDERELVKDGYTSLFGREGIPSTGFDPAEFGEWVQTAADSDIAAVEAFLIGQGQRN 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ELPR IR S P+I +SD SL+ TL FD GVDDVV KP+H REILAR AAI RRLK Sbjct: 61 FELPRAIRDRSMAPVIAVSDQHSLENTLALFDCGVDDVVRKPVHPREILARAAAIRRRLK 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N E G IRVFSDGRDPE+ GEVF LPRRERRILEYL+ANRG+RV KTQIF+AIYG+ Sbjct: 121 AITNYTEIGGIRVFSDGRDPEINGEVFALPRRERRILEYLIANRGRRVTKTQIFNAIYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 FDE VEENVVESHISKLRKKLR KLG DPVDSKRFLGY IDW Sbjct: 181 FDEEVEENVVESHISKLRKKLRKKLGVDPVDSKRFLGYCIDW 222 >gi|114706629|ref|ZP_01439530.1| two-component response regulator [Fulvimarina pelagi HTCC2506] gi|114538021|gb|EAU41144.1| two-component response regulator [Fulvimarina pelagi HTCC2506] Length = 223 Score = 257 bits (657), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 122/220 (55%), Positives = 164/220 (74%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++D+R LV DGY +LF +GVS GF++ EF++W+ ++ D+SA+E FL+G ++ Sbjct: 1 MIVIVDNRELVTDGYQSLFAREGVSAAGFSAEEFQDWISTAPEADLSAVEGFLLGDFDER 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R IR+ S+ P+I +S+ +L TLD F +G+DDVV KP+H +EILARV AI RR Sbjct: 61 ASSTRTIRSRSKAPMIALSESRNLDNTLDLFAAGIDDVVAKPVHVKEILARVGAIRRRES 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + TG I ++ DGRD EV G+ LPRRERRILEYL+AN+G+RV+K Q+FSAIYG+ Sbjct: 121 SEAAKTVTGEIAIYQDGRDAEVAGKPLALPRRERRILEYLVANKGRRVSKQQLFSAIYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FDE VEENV+ESHISKLRKKL+ +LG+DPV SKR+LGY I Sbjct: 181 FDENVEENVIESHISKLRKKLKMRLGYDPVSSKRYLGYGI 220 >gi|312115043|ref|YP_004012639.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311220172|gb|ADP71540.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 224 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 119/221 (53%), Positives = 162/221 (73%), Gaps = 1/221 (0%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR V +GY A F +GVS G +F +W+ ++ D+ A+EAFL+G + Sbjct: 1 MIVIVDDRETVLNGYAAWFCREGVSATGLAPHDFRQWVNTAPEPDIDAVEAFLLGDFQNR 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+P I++ S +I +++ SL TLD F +GVDDVV KP+H REILAR+ AI RR + Sbjct: 61 EEVPLKIKSRSGAAVIAMNETKSLNDTLDLFAAGVDDVVRKPVHVREILARIRAISRRSQ 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ +G IRVFSDGRDPE+ GE PLPRRERRILEYLM N+G+RV K+QIF+ +YG Sbjct: 121 QEAQSQPLSGRIRVFSDGRDPEIDGEPLPLPRRERRILEYLMTNKGRRVTKSQIFNFVYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 LFD+ ++ENV+ESHISKLRK+LR +LG DP+DS+RFLGY + Sbjct: 181 LFDDGIDENVIESHISKLRKRLRQRLGSDPIDSQRFLGYRL 221 >gi|110632641|ref|YP_672849.1| two component transcriptional regulator [Mesorhizobium sp. BNC1] gi|110283625|gb|ABG61684.1| two component transcriptional regulator, winged helix family [Chelativorans sp. BNC1] Length = 223 Score = 244 bits (624), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 128/221 (57%), Positives = 166/221 (75%), Gaps = 1/221 (0%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++D+R LV G+ +LF +GV+ GF EF +W++S+ ED+S++ AFL+G+ Sbjct: 1 MIVVVDERELVTKGFTSLFNREGVATAGFRPSEFNDWVESAPDEDLSSVSAFLLGRCRTP 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R IR ++ PLI +++ SL+ TL F+ GVDDVV KP+H EILAR++AI RR K Sbjct: 61 ETPARRIRDRTRAPLIALAEQHSLEDTLRLFECGVDDVVRKPVHVLEILARISAISRRAK 120 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R+ E G +R+FSDGRDPE+ GE FPLPRRERRILEYL +N +RV KTQIF+AIYG Sbjct: 121 QQDQRSTEIGRLRIFSDGRDPEIDGEPFPLPRRERRILEYLASNSSRRVTKTQIFNAIYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +FDE VEENVVESHISKLRKKLR KLGFDP+DSKR+LGY + Sbjct: 181 IFDEEVEENVVESHISKLRKKLRVKLGFDPIDSKRYLGYQL 221 >gi|319781666|ref|YP_004141142.1| transcriptional regulator domain-containing protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167554|gb|ADV11092.1| transcriptional regulator domain-containing protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 222 Score = 244 bits (624), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 128/220 (58%), Positives = 163/220 (74%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++D+R LV +GY +LF +G++ GF S EF EW+ S+A D+ ++ AFLIG + Sbjct: 1 MIVIVDERELVTEGYNSLFDREGIACAGFASGEFGEWVNSAADTDLRSVRAFLIGDCREG 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 PR IR + P+I +S+ SL+ TL F+SGVDDV+ KP+H REILAR+ AI RR + Sbjct: 61 SISPRQIRDRTGAPVIALSEQHSLENTLRLFESGVDDVIRKPVHIREILARITAIRRRAQ 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E G +R+F DGRDPE+ G+ PLPRRERRILEYL +NRG+RV KTQ+F+AIYG+ Sbjct: 121 EDVAYTEIGAMRIFMDGRDPEIDGQPLPLPRRERRILEYLASNRGRRVTKTQVFNAIYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FDE VEENVVESHISKLRKKLR KLG DP+DSKRFLGY + Sbjct: 181 FDEEVEENVVESHISKLRKKLREKLGTDPIDSKRFLGYRL 220 >gi|260466604|ref|ZP_05812792.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259029610|gb|EEW30898.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 222 Score = 243 bits (621), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 129/220 (58%), Positives = 162/220 (73%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++D+R LV +GY +LF +GV+ GF EF EW+ S+A D+ ++ AFLIG + Sbjct: 1 MIVIVDERELVTEGYNSLFDREGVACAGFAPGEFGEWVNSAADADLRSVRAFLIGDCREG 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 PR IR + P+I +S+ SL+ TL F+SGVDDVV KP+H REILAR+ AI RR + Sbjct: 61 SISPRQIRDRTGAPVIALSEQHSLENTLRLFESGVDDVVRKPVHIREILARITAIRRRAQ 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E G +R+F DGRDPE+ G+ PLPRRERRILEYL +NRG+RV KTQ+F+AIYG+ Sbjct: 121 EDVAYTEIGAMRIFMDGRDPEIDGQPLPLPRRERRILEYLASNRGRRVTKTQVFNAIYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FDE VEENVVESHISKLRKKLR KLG DP+DSKRFLGY + Sbjct: 181 FDEEVEENVVESHISKLRKKLREKLGTDPIDSKRFLGYRL 220 >gi|296445183|ref|ZP_06887143.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296257357|gb|EFH04424.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 222 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 129/220 (58%), Positives = 169/220 (76%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 MF+++D+R LV GY FG +G+S GF S +F +W+ S+ DV+A+EAFLIG+ + Sbjct: 1 MFIIVDERELVTSGYARHFGQEGISSAGFCSGQFLDWVGSAVETDVAAVEAFLIGECPER 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ELP+IIR SQ P+I +++ PSL+ TL F +GVDDVV KPIH +EILARV AI RR + Sbjct: 61 EELPKIIRKRSQAPVIAMNEAPSLEQTLGLFTAGVDDVVRKPIHVKEILARVCAIRRRAE 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + A GP++VF DGRDP V GE LPRRERRILEY + NRG+R+ K+QIF+A+YGL Sbjct: 121 IRRDYAMVGPMQVFFDGRDPLVCGEPLALPRRERRILEYFVMNRGRRLTKSQIFNAVYGL 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD+ VEENVVESH+SKLRKKLR +LG+DP+DS+RFLGY + Sbjct: 181 FDDVVEENVVESHVSKLRKKLRLRLGYDPIDSQRFLGYML 220 >gi|222147588|ref|YP_002548545.1| transcriptional regulator [Agrobacterium vitis S4] gi|221734576|gb|ACM35539.1| transcriptional regulator [Agrobacterium vitis S4] Length = 223 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 150/223 (67%), Positives = 182/223 (81%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++D+R LVK+GY +LFG +G+ GF+ +EF EW+ S+A DV+A+EAFL+G+G++ Sbjct: 1 MIVVVDERELVKNGYTSLFGREGIPSTGFDPIEFGEWVASAADSDVAAVEAFLLGQGDRT 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +LPR IR + P+I +SD PSL+ TL FDSGVDDVV KP+H REILAR AAI RRLK Sbjct: 61 GDLPRAIRDRTTAPVIAVSDQPSLEATLALFDSGVDDVVRKPVHPREILARAAAIRRRLK 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N E G IRV+SDGRDPE+ GE+FPLPRRERRILEYL+ANRG+RV+K+QIF+AIYG+ Sbjct: 121 AVANYTEIGAIRVYSDGRDPEIGGEIFPLPRRERRILEYLVANRGRRVSKSQIFNAIYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 FDE VEENVVESHISKLRKKLR KLG DPVDSKRFLGY IDW Sbjct: 181 FDEEVEENVVESHISKLRKKLRKKLGVDPVDSKRFLGYCIDWK 223 >gi|13472591|ref|NP_104158.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14023337|dbj|BAB49944.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 222 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 128/220 (58%), Positives = 160/220 (72%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++D+R LV +GY +LF +GV+ GF EF EW+ S+A D+ ++ AFLIG Sbjct: 1 MIVIVDERELVTEGYNSLFDREGVACAGFAPGEFGEWVNSAADTDLRSVRAFLIGDCRDG 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 PR IR + P+I +S+ SL+ TL F+SGVDDV+ KP+H REILAR+ AI RR Sbjct: 61 AISPRQIRDRTGAPVIALSEQHSLENTLRLFESGVDDVIRKPVHIREILARITAIRRRAH 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E G +R+F DGRDPE+ G+ PLPRRERRILEYL +NRG+RV KTQ+F+AIYG+ Sbjct: 121 EDVAYTEIGAMRIFMDGRDPEIDGQPLPLPRRERRILEYLASNRGRRVTKTQVFNAIYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FDE VEENVVESHISKLRKKLR KLG DP+DSKRFLGY + Sbjct: 181 FDEEVEENVVESHISKLRKKLREKLGTDPIDSKRFLGYRL 220 >gi|158422243|ref|YP_001523535.1| two-component response regulator [Azorhizobium caulinodans ORS 571] gi|158329132|dbj|BAF86617.1| two-component response regulator [Azorhizobium caulinodans ORS 571] Length = 222 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 112/219 (51%), Positives = 157/219 (71%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M+V++D RA V DGY++ F +G S G EF+EWL +++ +D+ A++ FL+G+ + Sbjct: 1 MYVVVDQRATVTDGYVSSFSREGFSSLGLGCNEFKEWLNTASDQDIGAVQGFLLGEFDNR 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 P +IR HS+ P+I + D SLQ TL+ F +G+DDVV KP+H REI+AR A++RR+ Sbjct: 61 PAFPEMIRTHSRAPIIALEDVRSLQQTLELFTAGIDDVVRKPVHVREIVARSDAVWRRVN 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + A G +RVF DGRDPEV G PLPRRER ILEYL+ N +RV KTQIF+ IYG+ Sbjct: 121 SAAGPATNGRLRVFFDGRDPEVDGVPLPLPRRERHILEYLVKNSRRRVTKTQIFNTIYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 F++ V+E+V+E H+SKLRKKLR KLG D +D+KR++GY Sbjct: 181 FNDDVDESVIEGHMSKLRKKLRMKLGEDVIDAKRYIGYQ 219 >gi|328545463|ref|YP_004305572.1| Response regulators consisting of a chemotaxis protein CheY domain and a winged-helix DNA-binding domain [polymorphum gilvum SL003B-26A1] gi|326415204|gb|ADZ72267.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Polymorphum gilvum SL003B-26A1] Length = 242 Score = 237 bits (605), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 114/221 (51%), Positives = 155/221 (70%), Gaps = 1/221 (0%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 MFV++DDR +V GY + F +G + E EW+ +++ +D++++EA L+G E+ Sbjct: 1 MFVIVDDREIVTSGYTSGFEREGFACMALLPSELAEWINAASEDDLASVEAVLLGDCEER 60 Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 P IIR Q P+I + + P L+ TLD F GVDDV+ KP+H REILARV AI RR Sbjct: 61 PGFPPIIRTRCGQTPIIALEEKPCLEQTLDLFACGVDDVLRKPVHVREILARVGAIRRRT 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G IRVF DGRDP V GEVF LPRRERRILEY+ N G+RV KTQI++A+YG Sbjct: 121 MAEADNLDVGRIRVFFDGRDPIVGGEVFELPRRERRILEYMARNHGRRVTKTQIYNAVYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 L +E V+E VVESH+SKLRKKL+ +LG+DP++SKR++GY + Sbjct: 181 LMNEEVDECVVESHVSKLRKKLKMRLGYDPIESKRYIGYML 221 >gi|115523206|ref|YP_780117.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115517153|gb|ABJ05137.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 237 Score = 233 bits (595), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 115/221 (52%), Positives = 153/221 (69%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 MFV+IDDR V DGY A F +GV GF+S +F +WL+ + D+ AI AFL+G Sbjct: 1 MFVVIDDRQGVIDGYAAGFNREGVVSIGFSSTDFRDWLECAVSNDLGAIGAFLLGDCVDR 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LP IR S+ P+I +S L+ T++ F++GVDDVV+ P+H REILAR A I RR Sbjct: 61 TSLPLSIRNRSRAPIIALSGLKHLKNTIELFEAGVDDVVHAPVHVREILARTAVIRRRTV 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S T I VF DGRDPE+ G LPRRE RILEY ++++GK + KTQ+F++IYGL Sbjct: 121 GSAEPTPTSVIHVFLDGRDPEIAGRTLALPRRELRILEYFVSHQGKWLTKTQLFNSIYGL 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + +ENV+ESH+SKLRKKLR LG+DP++SKR++GY +D Sbjct: 181 FDSSFDENVIESHVSKLRKKLRGHLGYDPIESKRYMGYRLD 221 >gi|319403977|emb|CBI77565.1| Flagellar transcriptional regulator ftcR [Bartonella rochalimae ATCC BAA-1498] Length = 231 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 125/224 (55%), Positives = 168/224 (75%), Gaps = 4/224 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR LV DGY LF +GV+ G +F +W+ +++ ++S++EA L+GK E Sbjct: 1 MIVVVDDRKLVTDGYATLFSREGVAATGLAPSDFSQWISTASHNEISSLEAVLLGKCENQ 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +ELP+ IR +S P++ +++ L T++ F SG+DDV+ KPIH REILAR+AAI RR Sbjct: 61 IELPKKIRNYSSTPILALTETNILDHTIELFQSGIDDVIRKPIHVREILARIAAIRRRIG 120 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ +N E GPI VF+DGRDP++ G PLPRRERRILEYL+AN GKRV KTQIF+A Sbjct: 121 NDIRGANTAVEVGPISVFNDGRDPQINGVNLPLPRRERRILEYLIANAGKRVNKTQIFNA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG+FDE +EENVVESHISKLRKKL+ KL +D +DSKRFLGYS+ Sbjct: 181 VYGIFDETIEENVVESHISKLRKKLKAKLNYDIIDSKRFLGYSL 224 >gi|319406993|emb|CBI80630.1| Flagellar transcriptional regulator ftcR [Bartonella sp. 1-1C] Length = 231 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 123/224 (54%), Positives = 165/224 (73%), Gaps = 4/224 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR LV DGY LF +GV+ G +F +W+ +++ ++S++EA L+GK E Sbjct: 1 MIVVVDDRKLVTDGYATLFSREGVAATGLAPSDFSQWISTASHNEISSLEAVLLGKCENQ 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---- 116 +ELP+ IR +S P++ +++ L T++ F SG+DDV+ KPIH REILAR+AAI Sbjct: 61 IELPKKIRNYSSTPILALTETNILDHTIELFQSGIDDVIRKPIHVREILARIAAIRRRIG 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ +N E GPI VF+DGRDP++ G PLPRRERRILEYL AN GKRV KTQIF+A Sbjct: 121 NNIRGANTAVEVGPISVFNDGRDPQINGIDLPLPRRERRILEYLAANAGKRVNKTQIFNA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG+FDE +EENVVESHISKLRKKL+ KL +D +DSKRFLGYS+ Sbjct: 181 VYGIFDETIEENVVESHISKLRKKLKAKLNYDIIDSKRFLGYSL 224 >gi|319405420|emb|CBI79039.1| Flagellar transcriptional regulator ftcR [Bartonella sp. AR 15-3] Length = 231 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 123/224 (54%), Positives = 169/224 (75%), Gaps = 4/224 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR LV DGY LF +GV+ G +F EW+ +++ ++S+IEA L+GK + Sbjct: 1 MIVVVDDRKLVTDGYATLFSREGVAATGILPSDFSEWISTASNNEISSIEAILLGKCKNQ 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +ELP+ IR +S P++ +++ +L T++ F SG+DDV+ KPIH REILAR+AAI RR Sbjct: 61 IELPKEIRNYSLTPILALTETNTLDHTIELFQSGIDDVIRKPIHVREILARIAAIRRRIG 120 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ +N E GPI +F+DGRDP++ G FPLPRRERRILEYL N G+RV KTQIF+A Sbjct: 121 SDIRATNTAIEIGPISIFNDGRDPQINGINFPLPRRERRILEYLTLNPGRRVNKTQIFNA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG+FD+ +EENV+ESHISKLRKKL+ KLG+D +DSKRFLGYS+ Sbjct: 181 VYGIFDDTIEENVIESHISKLRKKLKAKLGYDIIDSKRFLGYSL 224 >gi|319409170|emb|CBI82814.1| Flagellar transcriptional regulator ftcR [Bartonella schoenbuchensis R1] Length = 228 Score = 228 bits (581), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 125/224 (55%), Positives = 169/224 (75%), Gaps = 4/224 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR LV +GY ALF +GV+ G +F EW+ ++ +V++IEA L+GK E Sbjct: 1 MIVVVDDRKLVTEGYSALFAREGVATTGLLPSDFSEWISTAPEHEVNSIEAILLGKCENQ 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +ELP+ IR +S P++ +++ L T++ F +G+DDV+ KPIH REILAR+AAI RR Sbjct: 61 IELPKEIRTYSSAPILAMTETNVLDHTIELFQAGIDDVLRKPIHVREILARIAAIRRRIG 120 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ +N + GPI VF+DGRDP + G FPLPRRERRILEYL+ N GKRV KTQIF++ Sbjct: 121 GDVRSANAAIKIGPISVFNDGRDPRINGIDFPLPRRERRILEYLVTNYGKRVNKTQIFNS 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 IYG+FD+A+EENVVESHISKLRKKL+ K+G+D +DSKRFLGYS+ Sbjct: 181 IYGVFDDAIEENVVESHISKLRKKLKLKIGYDVIDSKRFLGYSL 224 >gi|170741404|ref|YP_001770059.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168195678|gb|ACA17625.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 224 Score = 228 bits (581), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 111/221 (50%), Positives = 153/221 (69%), Gaps = 2/221 (0%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M++ +DDR V GY A F +GVS G EF+ W +++ D+ AI+ FL+G Sbjct: 1 MYIFVDDRPTVTSGYAASFEREGVSSLGLMGEEFKNWFSAASACDLDAIQGFLLGDFADR 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +IR S+ P+I +SD +L+TTL F +G+DDV+ KP+H REILAR AI+RR+ Sbjct: 61 MACASLIRRQSRAPIIALSDVRTLETTLQLFTAGIDDVLGKPVHVREILARSEAIWRRVN 120 Query: 121 VSNNRA-ETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A E G ++V DGRDPEV GE PLPRRER ILEYL+ NRG+R+ K QIF+AIY Sbjct: 121 GETQPAGEQGERLKVHFDGRDPEVDGETLPLPRRERSILEYLVRNRGRRLTKAQIFNAIY 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G++ VEE+VVE H+SKLRKKLR +LG+DP+++KR++GY+ Sbjct: 181 GVYSNEVEESVVEGHVSKLRKKLRERLGYDPIEAKRYIGYT 221 >gi|90422637|ref|YP_531007.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90104651|gb|ABD86688.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB18] Length = 237 Score = 227 bits (578), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 111/221 (50%), Positives = 153/221 (69%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 MFV+IDDR V GY F +G+ GF+S +F +WL+ + D+ AI AFL+G Sbjct: 1 MFVVIDDRKGVIQGYADGFDREGIVSIGFSSTDFRDWLEGALGNDLGAIGAFLLGDCADR 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + LP IR + P+I ++ L++T++ F++GVDDVVN P+H REILAR A I RR Sbjct: 61 ISLPPSIRNRCRAPIIALNGLKHLKSTIELFEAGVDDVVNAPVHVREILARTAVIRRRTI 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T IRVF DGRDPE+ G LPRRE RILE+L++++GK + K Q+F+AIYGL Sbjct: 121 GPAEQTPTSVIRVFLDGRDPEIGGRTLALPRRELRILEHLVSHQGKWLTKNQMFNAIYGL 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + +ENV+ESH+SKLRKKLR LG+DP++SKR++GY +D Sbjct: 181 FDASFDENVIESHVSKLRKKLRGHLGYDPIESKRYMGYRLD 221 >gi|300024589|ref|YP_003757200.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299526410|gb|ADJ24879.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 276 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 110/220 (50%), Positives = 150/220 (68%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 MFV++DDR+ V G +A F +G++ S EF EW +S D+S IE FLIG E Sbjct: 1 MFVVLDDRSTVAGGCVACFEREGIAAVAVESHEFPEWFESVNDSDLSVIEGFLIGSVEHR 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ IR+ + PLIG+ + +L TL+ F G DDV+ KP H RE+LAR AI RR+K Sbjct: 61 RQISSRIRSRCRAPLIGLIEARALNETLELFSLGFDDVLAKPFHVREVLARSGAIRRRMK 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ + IR+F DGRDP V GEV LPRRERRILE L+ +R RV KTQIF+ +YG+ Sbjct: 121 MAEQCVDIAGIRIFFDGRDPLVNGEVLSLPRRERRILECLVLSRNTRVTKTQIFNRVYGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F++ + ENV+ESHIS+LRK+L+ +LG DP+DS+RFLGY + Sbjct: 181 FNDEIHENVIESHISRLRKRLKQRLGHDPIDSQRFLGYRL 220 >gi|254473390|ref|ZP_05086787.1| two-component response regulator [Pseudovibrio sp. JE062] gi|211957506|gb|EEA92709.1| two-component response regulator [Pseudovibrio sp. JE062] Length = 224 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 110/222 (49%), Positives = 159/222 (71%), Gaps = 1/222 (0%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M++++D++ LV DGY + F +G+S GF+ +F +WL ++ + A+EA LIG+ + Sbjct: 1 MYLIVDEQQLVTDGYASGFEREGISTSGFSPDDFRDWLNTAPDTEFEAVEAILIGEIGER 60 Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + +IIR SQ P++ ++ P L+ TL F +GVDDVV KP+H +EILARV AI RR Sbjct: 61 DKFSQIIRRRCSQKPVLVLNSSPVLEQTLKLFAAGVDDVVRKPVHPQEILARVNAIKRRT 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E G + V+ DGRDPE++G LPRRERRILEYL N G+R+ KTQI++ +YG Sbjct: 121 TNQSINVELGDLTVYFDGRDPEIKGNTLALPRRERRILEYLAQNNGRRLTKTQIYNFVYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +F+ V+ENV+ESHISKLRKKLR+++G+DP+DSKR+LGY I+ Sbjct: 181 IFESEVDENVIESHISKLRKKLRSQMGYDPIDSKRYLGYIIN 222 >gi|218682134|ref|ZP_03529735.1| putative two-component regulator transcriptional regulatory protein [Rhizobium etli CIAT 894] Length = 182 Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 117/182 (64%), Positives = 142/182 (78%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++D+R LVKDGY +LFG +G+ GF+ EF EW+Q++A D++A+EAFLIG+G++ Sbjct: 1 MIVVVDERELVKDGYTSLFGREGIPSTGFDPTEFGEWVQTAADSDIAAVEAFLIGQGQRN 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ELPR IR S P+I +SD SL+ TL FD GVDDVV KP+H REILAR AAI RRLK Sbjct: 61 YELPRAIRDRSMAPVIAVSDQHSLENTLALFDCGVDDVVRKPVHPREILARAAAIRRRLK 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N E G IRVFSDGRDPE+ GEVF LPRRERRILEYL+ANRG+RV KTQIF+AIYG+ Sbjct: 121 AIANYTEIGGIRVFSDGRDPEINGEVFALPRRERRILEYLIANRGRRVTKTQIFNAIYGI 180 Query: 181 FD 182 FD Sbjct: 181 FD 182 >gi|170748111|ref|YP_001754371.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170654633|gb|ACB23688.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 227 Score = 221 bits (563), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 102/224 (45%), Positives = 157/224 (70%), Gaps = 5/224 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M+V++D+R +V DGY+A F +G++ G + +FE+WLQ++ D+ A++ FL+G + Sbjct: 1 MYVIVDERPIVTDGYVANFNREGITSVGLLADDFEDWLQTAPATDLEAVQGFLLGDCAQR 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +LP +I+ S+ P+I + + L TL+ F +G+DDVV KP+H REILAR A++RR + Sbjct: 61 SDLPELIQKRSRAPIIAMIETRCLNETLNLFGAGIDDVVRKPVHVREILARTEAVWRRSQ 120 Query: 121 VSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + T ++V+ DGRDP++ GE LPRRER+ILE+L+ NRG+R+ K Q+F+ Sbjct: 121 RETAKDPTVVDRSARLKVYFDGRDPDIDGEKMTLPRRERQILEFLVRNRGRRMTKEQVFN 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 A+YG F V+E+V+E HISKLRKKLR KL FDP++ +R+LGY+ Sbjct: 181 AVYGAFTSDVDESVIEGHISKLRKKLRQKLSFDPIEVRRYLGYA 224 >gi|304392494|ref|ZP_07374434.1| flagellar transcriptional regulator FtcR [Ahrensia sp. R2A130] gi|303295124|gb|EFL89484.1| flagellar transcriptional regulator FtcR [Ahrensia sp. R2A130] Length = 259 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 113/235 (48%), Positives = 153/235 (65%), Gaps = 12/235 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI------ 54 M V++D R LV Y+A F +GV+ GF EF +W ++ + D +AI AF+I Sbjct: 1 MIVVVDRRDLVTAAYVAQFAHEGVAATGFCPDEFNDWFSTADKRDTAAISAFVIDAAAII 60 Query: 55 -GKG---EKVLELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108 G G + P + A P++ + + P+L+ TL F GVDDVV KP+H REI Sbjct: 61 TGDGSDADNACAKPSTLAAGVAFGKPILALLEQPALERTLALFHGGVDDVVRKPVHAREI 120 Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 LAR+A I RR K A ++VF+DGRDPEV GE FPLPRRE+RILEYL++ +R Sbjct: 121 LARLACISRRSKPEPVEASLTRVQVFADGRDPEVDGEAFPLPRREQRILEYLVSIEERRA 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +K QI++AIYG+F+ +EE V+ESHISKLRKKLR +LG+DP+DSKRFLGY + + Sbjct: 181 SKAQIYNAIYGIFNSDIEECVIESHISKLRKKLRGRLGYDPIDSKRFLGYRLTLD 235 >gi|121602724|ref|YP_989384.1| DNA-binding response regulator [Bartonella bacilliformis KC583] gi|120614901|gb|ABM45502.1| DNA-binding response regulator [Bartonella bacilliformis KC583] Length = 228 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 121/224 (54%), Positives = 165/224 (73%), Gaps = 4/224 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M V++DDR LV DGY LF +GV+ G + +F W+ + +VS+IEA L+G E Sbjct: 1 MIVVVDDRKLVTDGYSTLFSQEGVATTGLSPSDFSNWISKAPSSEVSSIEAVLLGDCENR 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +ELP+ IR +S P++ +++ L T++ F +G+DDV+ KPIH REILAR+AAI RR Sbjct: 61 VELPKEIRFYSSAPILAMTETNFLDHTIELFQAGIDDVLRKPIHVREILARIAAIRRRIG 120 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ ++ + GPI VF+DGRDP + G FPLPRRERRILEYL AN G+RV KTQIF+A Sbjct: 121 GDIRSADAAIKVGPISVFNDGRDPRINGVDFPLPRRERRILEYLAANFGRRVNKTQIFNA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG+FD+ +EENV+ESHISKLRKKL+ K+G+D +DSKRFLGYS+ Sbjct: 181 VYGVFDDVIEENVIESHISKLRKKLKLKVGYDIIDSKRFLGYSL 224 >gi|188579918|ref|YP_001923363.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179343416|gb|ACB78828.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 226 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 106/223 (47%), Positives = 148/223 (66%), Gaps = 4/223 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M++++D+R V + Y+A FG +GV +G ++WL ++ R DV AI+ FLIG Sbjct: 1 MYIVVDERQSVTEQYVAGFGAEGVPAQGLAVGSMKDWLDATPRIDVEAIDGFLIGDCADR 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 IR+ S+ P+I +++ SL+ TL F +G+DDVV KP+H REI+AR AI RR Sbjct: 61 ASCTVAIRSLSRAPIIALNETRSLEQTLALFTAGIDDVVRKPVHAREIIARATAIRRRTG 120 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 A G ++V++DGRDPE+ G LPRRER ILEYL NRG++V K QIF+A Sbjct: 121 RGVEPAPAPDRAGRLKVYTDGRDPEIDGTCLILPRRERHILEYLAKNRGRQVTKGQIFTA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +YG D +VEE+VVE HISKLRKKLR +LG+DP+++KR GY+ Sbjct: 181 VYGDLDSSVEESVVEGHISKLRKKLRMRLGYDPIEAKRMAGYT 223 >gi|218528721|ref|YP_002419537.1| transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|254559261|ref|YP_003066356.1| Two-component response regulator [Methylobacterium extorquens DM4] gi|218521024|gb|ACK81609.1| two component transcriptional regulator, winged helix family [Methylobacterium chloromethanicum CM4] gi|254266539|emb|CAX22303.1| Two-component response regulator [Methylobacterium extorquens DM4] Length = 226 Score = 215 bits (547), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 107/223 (47%), Positives = 147/223 (65%), Gaps = 4/223 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M++++D+R V D Y+A FG +GV +G ++WL ++ R DV AI+ FLIG Sbjct: 1 MYIVVDERQSVTDHYVAGFGAEGVEAQGLAIGSMKDWLDAAPRIDVEAIDGFLIGDCADR 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 IR+ S+ P+I +++ SL+ TL F G+DDVV KP+H REI+AR AI RR Sbjct: 61 ASCTVAIRSLSRAPIIALNETRSLEQTLALFTVGIDDVVRKPVHVREIIARATAIRRRTG 120 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 A G ++V++DGRDPE+ G LPRRER ILEYL NRG++V K QIF+A Sbjct: 121 RGVEPAPAPDRAGRLKVYTDGRDPEIDGACLILPRRERHILEYLSKNRGRQVTKGQIFTA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +YG D +VEE+VVE HISKLRKKLR +LG+DP+++KR GY+ Sbjct: 181 VYGDLDTSVEESVVEGHISKLRKKLRMRLGYDPIEAKRMAGYT 223 >gi|163850116|ref|YP_001638159.1| transcriptional regulator domain-containing protein [Methylobacterium extorquens PA1] gi|163661721|gb|ABY29088.1| transcriptional regulator domain protein [Methylobacterium extorquens PA1] Length = 226 Score = 214 bits (546), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 107/223 (47%), Positives = 146/223 (65%), Gaps = 4/223 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M++++D+R V D Y+A FG +GV +G +WL ++ R DV AI+ FLIG Sbjct: 1 MYIVVDERQSVTDHYVAGFGAEGVEAQGLAIGSMRDWLDAAPRIDVEAIDGFLIGDCADR 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 IR+ S+ P+I +++ SL+ TL F G+DDVV KP+H REI+AR AI RR Sbjct: 61 ASCTVAIRSLSRAPIIALNETRSLEQTLALFTVGIDDVVRKPVHVREIIARATAIRRRTG 120 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 A G ++V++DGRDPE+ G LPRRER ILEYL NRG++V K QIF+A Sbjct: 121 RGVEPAPAPDRAGRLKVYTDGRDPEIDGACLILPRRERHILEYLSKNRGRQVTKGQIFTA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +YG D +VEE+VVE HISKLRKKLR +LG+DP+++KR GY+ Sbjct: 181 VYGDLDTSVEESVVEGHISKLRKKLRMRLGYDPIEAKRMAGYT 223 >gi|254502765|ref|ZP_05114916.1| Transcriptional regulatory C terminal domain protein [Labrenzia alexandrii DFL-11] gi|222438836|gb|EEE45515.1| Transcriptional regulatory C terminal domain protein [Labrenzia alexandrii DFL-11] Length = 261 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 103/221 (46%), Positives = 148/221 (66%), Gaps = 1/221 (0%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 MF+++DDR +V GY A F +G + E +WL++ +D+++++A LIG+ + Sbjct: 1 MFIIVDDREIVTSGYAAAFEREGYASLELLPGELPDWLETGCSQDLASVDAILIGECTER 60 Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 IR+ + ++ + D SLQ TLD F +G D+V+ KP+H REI+AR RR Sbjct: 61 AGFITQIRSRCPEAQIVALEDTASLQGTLDLFSAGFDEVLKKPVHVREIIARFGVFRRRA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +E G I VF DGRDP V G+V LPRRERRILEYL+ N+G+RV KTQIF+A+YG Sbjct: 121 MARDTSSEAGAIEVFFDGRDPTVGGQVMELPRRERRILEYLVKNKGRRVTKTQIFNAVYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +E V+E VVESHISKLRKKL+ +LGFD ++S R++GY + Sbjct: 181 VMNEGVDECVVESHISKLRKKLKRQLGFDAIESTRYIGYML 221 >gi|240137250|ref|YP_002961719.1| Two-component response regulator [Methylobacterium extorquens AM1] gi|240007216|gb|ACS38442.1| Two-component response regulator [Methylobacterium extorquens AM1] Length = 226 Score = 213 bits (542), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 108/225 (48%), Positives = 148/225 (65%), Gaps = 8/225 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M++++D+R V D Y+A FG +GV +G +WL ++ R DV AI+ FLIG Sbjct: 1 MYIVVDERQSVTDHYVAGFGAEGVEAQGLAIGSMRDWLDAAPRIDVEAIDGFLIGDCADR 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 IR+ S+ P+I +++ SL+ TL F G+DDVV KP+H REI+AR AI RR Sbjct: 61 ASCTVAIRSLSRAPIIALNETRSLEQTLALFTVGIDDVVRKPVHVREIIARATAIRRRTG 120 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +RA G ++V++DGRDPE G LPRRER ILEYL NRG++V K QIF Sbjct: 121 RGVEPVPAPDRA--GRLKVYTDGRDPETDGACLVLPRRERHILEYLSKNRGRQVTKGQIF 178 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +A+YG D +VEE+VVE HISKLRKKLR +LG+DP+++KR GY+ Sbjct: 179 TAVYGDLDTSVEESVVEGHISKLRKKLRMRLGYDPIEAKRMAGYT 223 >gi|23008928|ref|ZP_00050168.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 226 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 109/226 (48%), Positives = 147/226 (65%), Gaps = 10/226 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M+++ID+R V D Y+A FG +GV G + WL ++ R DV AI+ FLIG Sbjct: 1 MYIVIDERQSVTDHYVAGFGAEGVQARGLAAETMRGWLGAAPRIDVEAIDGFLIGDCADR 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 IR+ S+ P+I +++ SL+ TL F G+DDVV KP+H REI+AR AI RR Sbjct: 61 TSCTVAIRSLSRAPIIALNETRSLEQTLALFTVGIDDVVRKPVHVREIIARATAIRRR-- 118 Query: 121 VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + AE P ++V++DGRDPE+ G+ LPRRER ILEYL NRG++V K QI Sbjct: 119 -TGRGAEPAPAPDRDGRLQVYTDGRDPEIDGDCLILPRRERDILEYLAKNRGRQVTKGQI 177 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 F+A+YG D VEE+VVE HISKLRKKLR +LG+DP+++KR GY+ Sbjct: 178 FTAVYGNLDIDVEESVVEGHISKLRKKLRMRLGYDPIEAKRMAGYT 223 >gi|27381957|ref|NP_773486.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27355127|dbj|BAC52111.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 264 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 109/221 (49%), Positives = 156/221 (70%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M++++DDR V + Y+ +GVS GF+S EF +WLQS++ D++A++AFL+G + Sbjct: 9 MYIIVDDRESVTNSYVGGLVREGVSSIGFSSGEFWDWLQSASESDLAAVDAFLLGDCDAR 68 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LPR +R S P+I +S L+ TL+ F+SGVDDVV PIH REILAR AAI RR Sbjct: 69 GSLPRAMRKRSSAPIIAMSGQKMLKNTLELFESGVDDVVYVPIHLREILARTAAIARRRV 128 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R I+VF +GRDPE+ G LPRRE RILEY+++N GK + KTQIF+A+YG+ Sbjct: 129 GELPRPCETRIQVFFNGRDPEIAGHALTLPRRELRILEYMVSNHGKWITKTQIFNAVYGI 188 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F+ +E+V+ESH+SKLRKKLR++LGFD + ++R++GY ++ Sbjct: 189 FESTFDESVIESHVSKLRKKLRDRLGFDAIVARRYVGYRLN 229 >gi|188579882|ref|YP_001923327.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179343380|gb|ACB78792.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 232 Score = 206 bits (523), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 102/231 (44%), Positives = 153/231 (66%), Gaps = 14/231 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M+ L+D R V GY A F +G+S EF WL++++R D+ AI+ FL+G E+ Sbjct: 1 MYFLVDPRDTVNAGYKASFEREGISSFALMPDEFLSWLRTASRTDLEAIQGFLLGDFEER 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +IR S+ P+I ++D SL+ T++ ++G+DDV+ KP+H REILAR AI+RR+ Sbjct: 61 AKCAGVIRKQSRAPIIALADLRSLEQTVELLEAGIDDVLPKPVHVREILARSEAIWRRVN 120 Query: 121 VSNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + RA+ ++VF DGRDPE+ G LPRRER ILEYL+ NRG+R+ Sbjct: 121 GAVAGAEAAEETGGETRADR--LKVFHDGRDPEIDGVPLSLPRRERHILEYLVRNRGRRL 178 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 KTQ+F+ +YG++ VEE+V+E H+SKLRKKL +LG DP+++KR++GY+ Sbjct: 179 TKTQVFNVVYGVYSNGVEESVIEGHVSKLRKKLAERLGHDPIEAKRYMGYT 229 >gi|163850077|ref|YP_001638120.1| transcriptional regulator domain-containing protein [Methylobacterium extorquens PA1] gi|218528680|ref|YP_002419496.1| transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240137210|ref|YP_002961679.1| Two-component response regulator [Methylobacterium extorquens AM1] gi|254559222|ref|YP_003066317.1| Two-component response regulator [Methylobacterium extorquens DM4] gi|163661682|gb|ABY29049.1| transcriptional regulator domain protein [Methylobacterium extorquens PA1] gi|218520983|gb|ACK81568.1| two component transcriptional regulator, winged helix family [Methylobacterium chloromethanicum CM4] gi|240007176|gb|ACS38402.1| Two-component response regulator [Methylobacterium extorquens AM1] gi|254266500|emb|CAX22264.1| Two-component response regulator [Methylobacterium extorquens DM4] Length = 233 Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 101/230 (43%), Positives = 153/230 (66%), Gaps = 11/230 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M+ L+D R V GY A F +G+S EF WL++++ D+ AI+ FL+G + Sbjct: 1 MYFLVDPRDTVNAGYKASFEREGISSFALMPDEFLSWLRAASPADLEAIQGFLLGDFAER 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +IR S+ P+I ++D SL+ T++ ++G+DDV+ KP+H REILAR AI+RR+ Sbjct: 61 AKCAGVIRKQSRAPIIALADLRSLEQTVELLEAGIDDVLPKPVHVREILARSEAIWRRVN 120 Query: 121 VSNNRAET---------GP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + +E GP ++VF DGRDPE+ G LPRRER ILEYL+ NRG+R+ Sbjct: 121 GAVQPSEAEGETEGEARGPDRLKVFHDGRDPEIDGVPLSLPRRERHILEYLVRNRGRRLT 180 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 KTQ+F+ +YG++ VEE+V+E H+SKLRKKL +LG+DP+++KR++GY+ Sbjct: 181 KTQVFNVVYGVYSNGVEESVIEGHVSKLRKKLAERLGYDPIEAKRYMGYT 230 >gi|170744536|ref|YP_001773191.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168198810|gb|ACA20757.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 226 Score = 198 bits (504), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 104/223 (46%), Positives = 142/223 (63%), Gaps = 4/223 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M+++ID+R V Y+A F + GV ++ WL + +R+D+ +E FLIG + Sbjct: 1 MYIVIDERQGVAAEYVAGFNEHGVPSRSLDADTLRTWLDARSRDDLDRVEGFLIGDYQHR 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 I+R S+ P+I +S+ SL TLD F +G+DDVV +P+H REILAR AI RR+ Sbjct: 61 AADTAILRRLSRAPIIALSETRSLAQTLDLFTAGIDDVVRRPVHVREILARADAIRRRMN 120 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R+ + + V DGRDPE+ GE LPRRER ILEYL NRG+ + KTQIF A Sbjct: 121 RGEPRSAAPQQAERLVVHFDGRDPEIDGESLMLPRRERHILEYLARNRGRWLTKTQIFDA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +YG VEE+VVE HISKLRKKLR ++G DP+++KR +GYS Sbjct: 181 VYGDHASDVEESVVEGHISKLRKKLRQRIGRDPIEAKRMVGYS 223 >gi|118589940|ref|ZP_01547344.1| two component transcriptional regulator, winged helix family protein [Stappia aggregata IAM 12614] gi|118437437|gb|EAV44074.1| two component transcriptional regulator, winged helix family protein [Stappia aggregata IAM 12614] Length = 257 Score = 187 bits (476), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 99/206 (48%), Positives = 144/206 (69%), Gaps = 1/206 (0%) Query: 14 GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-Q 72 GY + F +G + + E +WL+ + +D+ +++A L+G+ E+ IR+ + Sbjct: 4 GYASAFDREGYASLELHPSELLDWLEITCAQDLGSVDAILLGECEERCGYVASIRSRCPE 63 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 ++ + D +L++TLD F +G+DDV+ KP+H REI+ARV A RR+ NN A TG I Sbjct: 64 AQIVALEDTANLESTLDLFSAGMDDVLKKPVHVREIIARVGAFRRRITSRNNSAGTGAIE 123 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 VF DGRDP V G+V LPRRERRILEYL+ N+G+RV KTQIF+A+YG+ ++ V+E VVES Sbjct: 124 VFFDGRDPVVGGDVMELPRRERRILEYLVKNKGRRVTKTQIFNAVYGVMNDGVDECVVES 183 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218 HISKLRKKL+ KLG+D ++S R++GY Sbjct: 184 HISKLRKKLKKKLGYDAIESTRYIGY 209 >gi|82940572|emb|CAJ44296.1| putative transcriptional regulator protein [Rhizobium leguminosarum bv. viciae] Length = 131 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 99/124 (79%), Positives = 106/124 (85%) Query: 99 VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 + KP+H REILAR AAI RRLK N E G IRVFSDGRDPE+ GEVF LPRRERRILE Sbjct: 7 MRKPVHPREILARAAAIRRRLKAITNYTEIGGIRVFSDGRDPEINGEVFALPRRERRILE 66 Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 YL+ANRG+RV KTQIF+AIYG+FDE VEENVVESHISKLRKKLR KLG DPVDSKRFLGY Sbjct: 67 YLIANRGRRVTKTQIFNAIYGIFDEEVEENVVESHISKLRKKLRKKLGVDPVDSKRFLGY 126 Query: 219 SIDW 222 IDW Sbjct: 127 CIDW 130 >gi|218516972|ref|ZP_03513812.1| two component transcriptional regulator [Rhizobium etli 8C-3] Length = 136 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 89/125 (71%), Positives = 100/125 (80%), Gaps = 1/125 (0%) Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRIL 157 ++ IH + R+ + RRLK N + G IRVFSDGRDPE+ GEVF LPRRERRIL Sbjct: 12 CASRSIHAKSSPGRLRS-RRRLKAIANYTDIGGIRVFSDGRDPEINGEVFALPRRERRIL 70 Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217 EYL+ANRG+RV KTQIF+AIYG+FDE VEENVVESHISKLRKKLR KLG DPVDSKRFLG Sbjct: 71 EYLIANRGRRVTKTQIFNAIYGIFDEEVEENVVESHISKLRKKLRKKLGVDPVDSKRFLG 130 Query: 218 YSIDW 222 Y IDW Sbjct: 131 YCIDW 135 >gi|23008628|ref|ZP_00049995.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 203 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 73/174 (41%), Positives = 105/174 (60%), Gaps = 9/174 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M+ L+D R V GY A F +G+S G EF WL++++ D+ AI+ FL+G E+ Sbjct: 1 MYFLVDPRDSVNAGYRASFEREGISSFGLLPDEFLNWLRTASSGDLDAIQGFLLGDFEER 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +IR S+ P+I ++D SL+ T+ ++GVDDV+ KP+H REILAR AI+RR+ Sbjct: 61 AKCAALIRKQSRAPIIALADLRSLEETVQLLEAGVDDVLPKPVHVREILARSEAIWRRVN 120 Query: 121 ------VSNNRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 A+ G ++V+ DGRDPE+ G PL RRER ILEYL+ RG Sbjct: 121 GMVPAPAEAEGADGGADDRLKVYHDGRDPEIDGVPGPLARRERHILEYLVRQRG 174 >gi|229825404|ref|ZP_04451473.1| hypothetical protein GCWU000182_00760 [Abiotrophia defectiva ATCC 49176] gi|229790408|gb|EEP26522.1| hypothetical protein GCWU000182_00760 [Abiotrophia defectiva ATCC 49176] Length = 236 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/164 (35%), Positives = 93/164 (56%), Gaps = 7/164 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ + IRA ++ ++ +S LQ +D DSG +D + KP H E+ ARV ++ RR Sbjct: 72 MEVLKNIRAEDNETSVLILSARGGLQDKIDGLDSGANDYLCKPFHFEELEARVRSLTRRR 131 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V NN E G + + + R +GE L R+E ILEYL+ +R V++ ++ S ++ Sbjct: 132 VVQNNLVLECGELSLDTKARTVTAKGEELSLTRKELAILEYLILHREHPVSQEELISHVW 191 Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +V+ N + HIS LRKKLR LG+DP+ ++ GY I Sbjct: 192 ---DGSVDSFSNSIRVHISALRKKLRTALGYDPITNRVGQGYMI 232 >gi|167579287|ref|ZP_02372161.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] Length = 225 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 5/218 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + + L +G ++ E + + + R D ++ L G K L Sbjct: 3 LLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKEL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 L R+ R VP++ ++ + S+ +D F +G DD V KP RE++AR+ A+ RR Sbjct: 63 -LARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQCG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V + G + R+ + G + L RRE ILE LM +GK V+K ++ ++YGL Sbjct: 122 VGATQLACGDLVYLFATREFQCGGVLLALRRREHAILETLMLQQGKTVSKARLMDSVYGL 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + ++ +I +LRK L L + + R LGY Sbjct: 182 DDEP-SADAIDIYIHRLRKHLSGSLA--QIITLRGLGY 216 >gi|53717679|ref|YP_106665.1| response regulator protein [Burkholderia pseudomallei K96243] gi|53724235|ref|YP_104202.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|67641558|ref|ZP_00440334.1| DNA-binding response regulator TctD [Burkholderia mallei GB8 horse 4] gi|76811612|ref|YP_331671.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|121599653|ref|YP_994556.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|124386101|ref|YP_001027828.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126440707|ref|YP_001057097.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126450961|ref|YP_001082224.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|126451555|ref|YP_001064327.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134281570|ref|ZP_01768278.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|167001629|ref|ZP_02267423.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|167717409|ref|ZP_02400645.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] gi|167736451|ref|ZP_02409225.1| DNA-binding response regulator [Burkholderia pseudomallei 14] gi|167813526|ref|ZP_02445206.1| DNA-binding response regulator [Burkholderia pseudomallei 91] gi|167822070|ref|ZP_02453541.1| DNA-binding response regulator [Burkholderia pseudomallei 9] gi|167843678|ref|ZP_02469186.1| DNA-binding response regulator [Burkholderia pseudomallei B7210] gi|167892152|ref|ZP_02479554.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] gi|167900664|ref|ZP_02487869.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] gi|167908883|ref|ZP_02495974.1| DNA-binding response regulator [Burkholderia pseudomallei 112] gi|167916922|ref|ZP_02504013.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] gi|217423889|ref|ZP_03455389.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|226193228|ref|ZP_03788838.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|237814435|ref|YP_002898886.1| DNA-binding response regulator TctD [Burkholderia pseudomallei MSHR346] gi|242315495|ref|ZP_04814511.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|254174802|ref|ZP_04881463.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|254184105|ref|ZP_04890696.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|254186570|ref|ZP_04893087.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|254194715|ref|ZP_04901146.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|254201274|ref|ZP_04907638.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|254206615|ref|ZP_04912966.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|254257956|ref|ZP_04949010.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] gi|254298627|ref|ZP_04966078.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|254357348|ref|ZP_04973622.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|52208093|emb|CAH34023.1| response regulator protein [Burkholderia pseudomallei K96243] gi|52427658|gb|AAU48251.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|76581065|gb|ABA50540.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|121228463|gb|ABM50981.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|124294121|gb|ABN03390.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126220200|gb|ABN83706.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126225197|gb|ABN88737.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|126243831|gb|ABO06924.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|134247237|gb|EBA47323.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|147747168|gb|EDK54244.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|147752157|gb|EDK59223.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|148026412|gb|EDK84497.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|157808646|gb|EDO85816.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|157934255|gb|EDO89925.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|160695847|gb|EDP85817.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|169651465|gb|EDS84158.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|184214637|gb|EDU11680.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|217392952|gb|EEC32974.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|225934828|gb|EEH30805.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|237503053|gb|ACQ95371.1| DNA-binding response regulator TctD [Burkholderia pseudomallei MSHR346] gi|238522511|gb|EEP85955.1| DNA-binding response regulator TctD [Burkholderia mallei GB8 horse 4] gi|242138734|gb|EES25136.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|243062639|gb|EES44825.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|254216645|gb|EET06029.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 225 Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 108/218 (49%), Gaps = 5/218 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + + L +G ++ E + + + R D ++ L G K L Sbjct: 3 LLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKEL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 L R+ R VP++ ++ + S+ +D F +G DD V KP RE++AR+ A+ RR Sbjct: 63 -LARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQCG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V + G + R+ + G L RRE ILE LM +GK V+K ++ ++YGL Sbjct: 122 VGATQLACGDLVYLFATREFQCGGAPLALRRREHAILETLMLQQGKTVSKARLMDSVYGL 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + ++ +I +LRK L L + + R LGY Sbjct: 182 DDEP-SADAIDIYIHRLRKHLSGSLA--QIITLRGLGY 216 >gi|209963556|ref|YP_002296471.1| cell cycle transcriptional regulator (CheY-like receiver domain) CtrA, putative [Rhodospirillum centenum SW] gi|209957022|gb|ACI97658.1| cell cycle transcriptional regulator (CheY-like receiver domain) CtrA, putative [Rhodospirillum centenum SW] Length = 256 Score = 88.6 bits (218), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 1/142 (0%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126 R +IG+ + + +T+ + SG DDV+ KPI+ E AR+ A+ RR S++ Sbjct: 69 RCSGHTIIIGLLGHRCVTSTIAYLRSGADDVLVKPINALEFEARLHAVRRRTHGHSSSEL 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + V+ DGRDP V G+ L RE I L N G+ V+K +I+ +YGL Sbjct: 129 RVGRLTVYLDGRDPAVDGQRLRLSHREHAIFSVLALNVGRVVSKEKIYETVYGLTGSDPL 188 Query: 187 ENVVESHISKLRKKLRNKLGFD 208 + V++ +I KLRKKL G D Sbjct: 189 DKVIDVYICKLRKKLAEATGGD 210 >gi|291167113|gb|EFE29159.1| transcriptional regulator FeuP [Filifactor alocis ATCC 35896] Length = 225 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 7/164 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R IR S+ ++ +S LQ +D D+G +D + KP H E+ ARV ++ RR Sbjct: 60 MDVLRSIREEDSETGILILSARGQLQDKIDGLDNGANDYLCKPFHFEELEARVRSLTRRR 119 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V NN E G + + + R +G VF L R+E +LEYLM ++ + V + ++ ++ Sbjct: 120 VVQNNLVLECGELALDTKARTVSARGTVFSLTRKEFGLLEYLMLHQDRPVGQEELIEHVW 179 Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +V+ N + HIS LRKKL+ LG+DP+ ++ GY I Sbjct: 180 ---DASVDSFSNSIRVHISALRKKLKAVLGYDPIVNRVGQGYII 220 >gi|258654780|ref|YP_003203936.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558005|gb|ACV80947.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 235 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 93/161 (57%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LEL R +R + VP+I ++ + L FD+G DD + KP E+LARV+A+ RR Sbjct: 65 LELARALRGGTDVPVIFVTALDGVDDRLAGFDAGADDYLVKPFAVAELLARVSAVLRRSG 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++S E G + V D + G+ L ERR+L YL +RG+ ++KTQI + ++G Sbjct: 125 RLSAQLIEVGDLIVDDDAGVVQRAGQEIDLTATERRLLLYLARHRGRVLSKTQILTQVWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +A + N+VE+ IS LR+KL ++ G + + R +GY + Sbjct: 185 Y--DAYDPNLVEAFISGLRRKL-DQHGPRLIHTVRGVGYRL 222 >gi|83955132|ref|ZP_00963788.1| two-component transcriptional regulator [Sulfitobacter sp. NAS-14.1] gi|83840461|gb|EAP79634.1| two-component transcriptional regulator [Sulfitobacter sp. NAS-14.1] Length = 232 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 4/174 (2%) Query: 51 AFLIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109 A LIG+ + E R +R V P+I + D+ + + T D + G DDV+ PI E+L Sbjct: 49 AVLIGECDDTREYIRAMRTAGCVNPVIVLKDFRNAKDTSDLLNLGADDVIVSPIRGAEVL 108 Query: 110 ARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 +R +I RR ++ G + + DGRDP V G L +RE + ++L N K + Sbjct: 109 SRTNSIIRRHYGHASESVIVGELTAYFDGRDPIVSGSRIKLSKREYSVFQHLALNSNKVI 168 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220 +K I+ AIYG + + V++ +I KLRKKL +K G+ +++ GY + Sbjct: 169 SKDAIYDAIYGSSIDQPFDKVIDVYICKLRKKLASASKSGWQYIETVHGRGYKL 222 >gi|167761405|ref|ZP_02433532.1| hypothetical protein CLOSCI_03815 [Clostridium scindens ATCC 35704] gi|167661071|gb|EDS05201.1| hypothetical protein CLOSCI_03815 [Clostridium scindens ATCC 35704] Length = 225 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 8/167 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G KVL+ R+ ++ ++ +S LQ +D D G +D + KP H E+ ARV ++ Sbjct: 59 GMKVLQKIRM--EDTETNILILSARGQLQDKIDGLDGGANDYLCKPFHFEELEARVRSLT 116 Query: 117 RRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR V NN E G I + + R +G L R+E +LEYLM ++ + V++ ++ Sbjct: 117 RRCVVQNNLVLECGEISLDTKARTALARGIELSLTRKELGLLEYLMLHQERPVSQEELIQ 176 Query: 176 AIYGLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ D +V+ N + HIS LRKKLR LG+DP+ ++ GY I Sbjct: 177 HVW---DGSVDSFSNSIRVHISALRKKLRAALGYDPITNRIGQGYLI 220 >gi|83944168|ref|ZP_00956624.1| two-component transcriptional regulator [Sulfitobacter sp. EE-36] gi|83845035|gb|EAP82916.1| two-component transcriptional regulator [Sulfitobacter sp. EE-36] Length = 234 Score = 88.2 bits (217), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 4/174 (2%) Query: 51 AFLIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109 A LIG+ + E R +R V P+I + D+ + + T D + G DDV+ PI E+L Sbjct: 51 AVLIGECDDTREYIRAMRTAGCVNPVIVLKDFRNAKDTSDLLNLGADDVIVSPIRGAEVL 110 Query: 110 ARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 +R +I RR ++ G + + DGRDP V G L +RE + ++L N K + Sbjct: 111 SRTNSIIRRHYGHASESVIVGELTAYFDGRDPIVSGSRIKLSKREYSVFQHLALNSNKVI 170 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220 +K I+ AIYG + + V++ +I KLRKKL +K G+ +++ GY + Sbjct: 171 SKDAIYDAIYGSSIDQPFDKVIDVYICKLRKKLASASKSGWQYIETVHGRGYKL 224 >gi|167834881|ref|ZP_02461764.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43] Length = 225 Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 108/218 (49%), Gaps = 5/218 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + I L +G ++ E + + + R D ++ L G K L Sbjct: 3 LLLVEDNAELAHWIIDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKEL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 L R+ R VP++ ++ + S+ +D F +G DD V KP RE++AR+ A+ RR Sbjct: 63 -LARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQCG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V + G + R+ + G L RRE ILE LM +GK V+K ++ ++YGL Sbjct: 122 VGVTQLACGDLVYLFATREFQCGGVPLALRRREHAILETLMLQQGKTVSKARLMDSVYGL 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + ++ +I +LRK L L + + R LGY Sbjct: 182 DDEP-SADAIDIYIHRLRKHLSGSLA--QIITLRGLGY 216 >gi|83026425|gb|ABB96249.1| cell cycle transcriptional regulator [Azospirillum brasilense] Length = 264 Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 3/206 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 VL++ L+ D G + + + EE L+ D +A ++G + Sbjct: 4 VLVEPNPLIADALGRQLGMGKIRYDRQDWAGLEELLRDQG-ADGLGYDAIVLGSVDDPAR 62 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 +RAH ++ + D + TT++ +G DDV+ KP+ E+ AR+ RR + Sbjct: 63 CVAALRAHQVGAAILCLLDRRCVATTVELLHAGADDVLVKPVVSAEVRARIEVARRRSRG 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +N G + VF DGRDPEV GE L +RE IL L A+ + V+K I+ +YGL Sbjct: 123 LLSNAVRVGQLTVFLDGRDPEVAGERLRLSQREHAILGVLAAHHRRVVSKEHIYDEVYGL 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLG 206 + V++ +I KLRKK+ G Sbjct: 183 SGADPLDKVIDVYICKLRKKIAEATG 208 >gi|126732451|ref|ZP_01748250.1| two-component system regulatory protein [Sagittula stellata E-37] gi|126707090|gb|EBA06157.1| two-component system regulatory protein [Sagittula stellata E-37] Length = 233 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 72/223 (32%), Positives = 110/223 (49%), Gaps = 10/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIE---AFLIGKGE 58 +L++D A V D +A FG G +++ NS+E + L + A +D I G G Sbjct: 13 LLLVEDTADVADAIVASFGHRGDAVDHVNSVE--DALGALAVQDYDVIILDIGLPDGLGT 70 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +L R + P++ ++ +++ + D G DD + KP RE+ ARV A+ RR Sbjct: 71 DILSSLR--SRGTPTPVMMLTARSNIEDRVAALDKGADDYLIKPFDLRELHARVRAMLRR 128 Query: 119 LKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V + E G I G EV+G L RRE +LE L+ANR + V K ++ + Sbjct: 129 QDVDRSGVIEFGDITFDPAGLTVEVKGRPVALVRREFNVLEILLANRERVVPKDKLLERM 188 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Y DE V N VE ++ +LRKKL N + + R LGY + Sbjct: 189 YAFNDEDVSPNAVELYVGRLRKKLCNSQ--ITIKTLRGLGYQL 229 >gi|288962696|ref|YP_003452990.1| transcriptional regulator [Azospirillum sp. B510] gi|288914962|dbj|BAI76446.1| transcriptional regulator [Azospirillum sp. B510] Length = 274 Score = 86.3 bits (212), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 50 EAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108 +A +IG ++RA + +I + + TT +G DDV+ KPI EI Sbjct: 50 DAIIIGDVGDTEACVAMLRARNVTAAIICLIERRCANTTAGILRAGADDVLVKPIVSTEI 109 Query: 109 LARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 AR+ AI RR +++N G + VF DGRDPEV GE L +RE IL L N + Sbjct: 110 RARLEAIRRRSYGLTSNAVTVGRLTVFLDGRDPEVDGERLRLSQREHAILSVLALNHRRV 169 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 V+K I+ +YGL + V++ +I KLRKK+ G Sbjct: 170 VSKEHIYEEVYGLSGSDPLDKVIDVYICKLRKKIDTATG 208 >gi|167568211|ref|ZP_02361085.1| DNA-binding response regulator [Burkholderia oklahomensis C6786] Length = 225 Score = 85.9 bits (211), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 5/218 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + + L +G ++ E + + + R D ++ L G K L Sbjct: 3 LLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKEL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 L R+ R VP++ ++ + S+ +D F +G DD V KP RE++AR+ A+ RR Sbjct: 63 -LARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQCG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V + G + R+ + G L RRE ILE LM +GK V+K ++ ++YGL Sbjct: 122 VGATQLACGDLVYLFATREFQCSGVPLVLRRREHAILETLMLQQGKTVSKARLMDSVYGL 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + ++ +I +LRK L + + R LGY Sbjct: 182 DDEP-SADAIDIYIHRLRKHLSGSAA--QIITLRGLGY 216 >gi|83719158|ref|YP_440599.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|167617392|ref|ZP_02386023.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] gi|83652983|gb|ABC37046.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 225 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 5/218 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + + L +G ++ E + + + R D ++ L G K L Sbjct: 3 LLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKEL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 L R+ R VP++ ++ + S+ +D F +G DD V KP RE++AR+ A+ RR Sbjct: 63 -LARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQCG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V + G + R+ + L RRE ILE LM +GK V+K ++ ++YGL Sbjct: 122 VGATQLACGDLVYLFATREFQCGSVPLALRRREHAILETLMLQQGKTVSKARLMDSVYGL 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + ++ +I +LRK L L + + R LGY Sbjct: 182 DDEP-SADAIDIYIHRLRKHLSGSLA--QIITLRGLGY 216 >gi|118591736|ref|ZP_01549132.1| two-component system, regulatory protein [Stappia aggregata IAM 12614] gi|118435729|gb|EAV42374.1| two-component system, regulatory protein [Stappia aggregata IAM 12614] Length = 212 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 66/210 (31%), Positives = 109/210 (51%), Gaps = 12/210 (5%) Query: 19 FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIRAHSQ-VPLI 76 G GV+ + +LE + R DV ++ L G G EL + IRA + P++ Sbjct: 9 LGRSGVACDLAKTLEEARACVTVQRYDVIVLDINLPDGLGT---ELLKEIRARGERTPVL 65 Query: 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRV 133 ++ S+ + +SG DD + KP HRE+ AR+ A+YRR + ++AE G + Sbjct: 66 MLTAEFSVDDRVSSLNSGADDYLVKPFDHRELEARIRALYRREQ--GDKAEELTLGSLTF 123 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 + R G L RRE +LE L+ NRGK V+K ++F ++ D V N +E + Sbjct: 124 NASARVVRQDGSPITLTRREFSLLEILVRNRGKTVSKERLFEGVFSFQDTDVSMNALELY 183 Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +++LRKKL G ++++R LGY ++ + Sbjct: 184 VARLRKKLSG--GSVRIETQRGLGYKLEVD 211 >gi|317125788|ref|YP_004099900.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589876|gb|ADU49173.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 226 Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 108/216 (50%), Gaps = 14/216 (6%) Query: 8 RALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66 RAL + GY A DG +LE F E E + D+ ++ L G +E+ R+ Sbjct: 18 RALGEAGYAADVAHDGPAALEAF---EVETY-------DLVVLDLMLPGIAGGGMEVCRV 67 Query: 67 IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +R HS VP++ ++ SL+ ++ D+G DD + KP H E+LARV A+ RR ++ Sbjct: 68 MRRHSSDVPILMLTALDSLRRKVEGLDAGADDYLVKPFHLSELLARVRALMRRAPRADAP 127 Query: 126 A-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E + + R G PL +E +LEYLM N G V+ +Q+ + + Sbjct: 128 VLEAAGVLLDPATRTAHRAGRSIPLTAKEYAVLEYLMRNAGHVVSSSQLIDHAWDTNYQG 187 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V NVV+++I LR KL + ++++R GY I Sbjct: 188 V-SNVVQTYIRYLRVKLAEPGLPEVIETRRGYGYLI 222 >gi|260430186|ref|ZP_05784161.1| DNA-binding response regulator [Citreicella sp. SE45] gi|260419109|gb|EEX12364.1| DNA-binding response regulator [Citreicella sp. SE45] Length = 217 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 109/222 (49%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +LI+D A+V D + G D + + LE E L+ D+ ++ L G+ Sbjct: 3 ILLIEDDAIVGDALVKSLGRDRADVVWSRDGLEAEAMLRGGG-FDLVVLDLGL--PGQDG 59 Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L R +R V P++ ++ ++ + D G DD + KP E+LAR A+ RR Sbjct: 60 LTLLRGLRGRGDVTPVLVLTARDGVEDRIRGLDHGADDYLLKPFDTGELLARCRALLRRA 119 Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + +R E G + V + G V LP++E R+L YL RG+ V K Q+ +Y Sbjct: 120 QGRGEDRIELGQLTVDLQAHTVTLAGRVLTLPQKEFRLLVYLAERRGRVVPKPQLEQMLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +DE E N VE ++S LR+ K+G + + R +GY I Sbjct: 180 G-WDEGAESNTVEVYVSALRR----KIGAASIRTLRGVGYMI 216 >gi|312962580|ref|ZP_07777070.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens WH6] gi|311283160|gb|EFQ61751.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens WH6] Length = 225 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 109/219 (49%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ D G +E + E + D++ I+ L G G L Sbjct: 3 LLVVEDEALLRHHLFTRLTDSGHVVEAVANAEEALYQTGQFNHDLAIIDLGLPGMGG--L 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R ++ P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR Sbjct: 61 DLIRQLRTQAKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARMNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+ + + + + E L E RILEYLM + + VAK ++ +Y Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLDEEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL GF P+D+ R LGY Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLEGPSGFKPIDTVRGLGY 218 >gi|317500294|ref|ZP_07958520.1| transcriptional regulatory protein CutR [Lachnospiraceae bacterium 8_1_57FAA] gi|316898302|gb|EFV20347.1| transcriptional regulatory protein CutR [Lachnospiraceae bacterium 8_1_57FAA] Length = 224 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 75/134 (55%), Gaps = 6/134 (4%) Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEV 146 +D D+G +D + KP H E+ AR+ ++ R N+ T G + + R V GE Sbjct: 88 VDGLDAGANDYLAKPFHLEELAARIRSLTLRQFTQNDVVLTCGDVSFDTKSRKAIVGGEP 147 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESHISKLRKKLRNK 204 PL R+E ILEYLM NRG+ +++ + ++ D +V+ N + HIS LRKKLR Sbjct: 148 LPLTRKETGILEYLMVNRGRPISQEEFIEHVW---DNSVDNFSNSIRVHISALRKKLRTS 204 Query: 205 LGFDPVDSKRFLGY 218 LG+DP+ ++ GY Sbjct: 205 LGYDPIRNRIGEGY 218 >gi|331086930|ref|ZP_08336007.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410096|gb|EGG89531.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 226 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 92/162 (56%), Gaps = 3/162 (1%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +EL + +R ++ + ++ +S + ++ D+G +D + KP H +E+ AR+ ++ RR Sbjct: 60 MELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRK 119 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V N+ + G I+ + R+ + E PL R+E ILEYL+ N G+ V++ ++ ++ Sbjct: 120 FVQNDICLKCGEIKFDTIKREAYAKEEAVPLTRKENGILEYLLINIGRPVSQEELIEHVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + H+S LRKKL+ KLG+DP+ +K GY I Sbjct: 180 DATADSFS-GAIRVHMSSLRKKLKAKLGYDPIQNKVGEGYKI 220 >gi|332140773|ref|YP_004426511.1| response regulator in two-component regulatory system with PhoQ [Alteromonas macleodii str. 'Deep ecotype'] gi|327550795|gb|AEA97513.1| response regulator in two-component regulatory system with PhoQ [Alteromonas macleodii str. 'Deep ecotype'] Length = 224 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 +A P++ ++ Q ++ D+G DD + KP H+ E+LAR A+ RR +N Sbjct: 68 QADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALIRRASGQANPTI 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + GPI + + + + G+ L E +++EYLM N K ++KT++ IY D ++ Sbjct: 128 QFGPISLDTVSEELSINGKALDLTAYEYKVMEYLMLNPQKVISKTELTEHIYDQ-DFDLD 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 NV+E + +LRKKL P+++ R GY I+ N Sbjct: 187 SNVIEVFVGRLRKKLDPAGDLKPIETLRGRGYRINRN 223 >gi|169824288|ref|YP_001691899.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|167831093|dbj|BAG08009.1| two-component response regulator [Finegoldia magna ATCC 29328] Length = 238 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 8/222 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGK-GE 58 M ++D +++ I ++G GF EF+ L SS+ D+ ++ L GK G Sbjct: 17 MICCVEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSI-DLIILDIMLPGKSGL 75 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++L+ R +P++ ++ + + DSG DD + KP E+LARV A+ RR Sbjct: 76 EILKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRR 135 Query: 119 LKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +S +++ I + D R V GE L +E +L YL++N GK + + I + Sbjct: 136 SSLSKTKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTK 195 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I+G FD E V+ HI+ LR+KL+N + + R LGY Sbjct: 196 IWG-FDFEGESRTVDVHIATLRQKLKN--ASSIIKTIRNLGY 234 >gi|238924384|ref|YP_002937900.1| response regulator [Eubacterium rectale ATCC 33656] gi|238876059|gb|ACR75766.1| response regulator [Eubacterium rectale ATCC 33656] Length = 257 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 93/162 (57%), Gaps = 3/162 (1%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +EL + +R ++ + ++ +S + ++ D+G +D + KP H +E+ AR+ ++ RR Sbjct: 91 MELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRK 150 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V N+ + G I+ + R+ +GE PL R+E ILEYL+ N G+ V++ ++ ++ Sbjct: 151 FVQNDICLKCGEIKFDTIKREAYAKGEPVPLTRKENGILEYLLINIGRPVSQEELIEHVW 210 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + H+S LRKKL+ +LG+DP+ +K GY I Sbjct: 211 DATADSF-SGAIRVHMSSLRKKLKAELGYDPILNKVGEGYKI 251 >gi|302380543|ref|ZP_07269008.1| response regulator receiver domain protein [Finegoldia magna ACS-171-V-Col3] gi|303233958|ref|ZP_07320607.1| response regulator receiver domain protein [Finegoldia magna BVS033A4] gi|302311486|gb|EFK93502.1| response regulator receiver domain protein [Finegoldia magna ACS-171-V-Col3] gi|302494883|gb|EFL54640.1| response regulator receiver domain protein [Finegoldia magna BVS033A4] Length = 222 Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 8/222 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGK-GE 58 M ++D +++ I ++G GF EF+ L SS+ D+ ++ L GK G Sbjct: 1 MICCVEDDKSIRELIIYALNNEGYDAMGFGDYGEFKSTLYSSSI-DLIILDIMLPGKSGL 59 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++L+ R +P++ ++ + + DSG DD + KP E+LARV A+ RR Sbjct: 60 EILKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRR 119 Query: 119 LKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +S +++ I + D R V GE L +E +L YL++N GK + + I + Sbjct: 120 SSLSKTKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTK 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I+G FD E V+ HI+ LR+KL+N + + R LGY Sbjct: 180 IWG-FDFEGESRTVDVHIATLRQKLKNASSI--IKTIRNLGY 218 >gi|332993804|gb|AEF03859.1| response regulator in two-component regulatory system with PhoQ [Alteromonas sp. SN2] Length = 224 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 2/153 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 + P++ ++ Q ++ D+G DD + KP H+ E+LARV A+ RR +N + GP Sbjct: 72 RCPVLILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARVKALIRRASGQANPVIQFGP 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I + + + V L E +++EYLM N K V+KT++ IY D ++ NV+ Sbjct: 132 ISLDTVAEEITVNDAPLELTAYEYKVMEYLMLNPQKVVSKTELTEHIYDQ-DFDLDSNVI 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E + +LRKKL + F P+++ R GY I+ N Sbjct: 191 EVFVGRLRKKLDPENSFKPIETLRGRGYRINRN 223 >gi|13474722|ref|NP_106291.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14025477|dbj|BAB52077.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 224 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 89/163 (54%), Gaps = 2/163 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ + +PR+ H VP+I ++ L + D+G DD + KP E++AR+ A++ Sbjct: 57 GDGLSLIPRLRALHLDVPVIALTAMSGLDDRVAGLDAGADDYMVKPFATVELVARLHALH 116 Query: 117 RRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR S N+ G + R+ ++ + LPRRER +LE L+ G+ + ++ + Sbjct: 117 RRSFTSRANQTMVGRLTYDFRHREALIEDQALDLPRRERLVLETLIRRPGRTIMRSALEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 A+Y L DE + N +++HIS+LR+KL + + + R LGY Sbjct: 177 AVYALDDE-IGSNALDAHISRLRRKLDDVAAGIEIRAIRNLGY 218 >gi|8885859|gb|AAF80268.1|AF155506_2 ArmR [Pseudomonas sp. JR1] Length = 227 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 117/224 (52%), Gaps = 12/224 (5%) Query: 1 MFVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59 M VL+ +D L+ G +A G+++E + + A DV ++ L E Sbjct: 1 MHVLVCEDDELIASGIVAGLTAQGLTVEHVATASSARAMLKVAEFDVMVLDLGL--PDED 58 Query: 60 VLELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 L+L + +R HS ++P++ ++ S+ +D +G DD + KP RE+ AR+ + R Sbjct: 59 GLKLLQQLR-HSGLEIPVLILTARDSVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLR 117 Query: 118 RLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R+ S N E G + R+ + G+ L RRE+ +L+ L+ NRG+ ++ Q+ + Sbjct: 118 RVAGRSVNLIEHGRLTYDPSSRETMLGGQPVDLSRREQSLLQALLHNRGRVLSTEQLKDS 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG F++ +E N + HI LR+KL N + V++ R LGY + Sbjct: 178 VYG-FNDELESNALNVHIHHLRRKLGNGI----VETVRGLGYRL 216 >gi|209517913|ref|ZP_03266746.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209501629|gb|EEA01652.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 231 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 105/219 (47%), Gaps = 6/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + + L + +++ + E E L D ++ L G G K + Sbjct: 3 LLLVEDDADLARWVMNLMQVEQFAIDWAQNGECAEALLGQQCYDAVLLDMRLPGIGGKEV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R+ R VP++ ++ S + F +G DD V KP RE++AR+ A+ RR Sbjct: 63 -LARLRRKRDNVPVLMLTANGSTDDKVACFSAGADDYVVKPFDARELVARIKALIRRQAA 121 Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E G +R D R+ +Q E PL RRE ILE L+ +GK V+K + I+ Sbjct: 122 GDRGQSTECGNLRYLFDSREFVLQDERLPLRRREHAILEALILKQGKTVSKATLMDKIFT 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L DE + ++ +I +LRK L + + R LGY Sbjct: 182 L-DEEPSADAIDIYIHRLRKHLAASTA--KIMTLRGLGY 217 >gi|297588265|ref|ZP_06946908.1| response regulator [Finegoldia magna ATCC 53516] gi|297573638|gb|EFH92359.1| response regulator [Finegoldia magna ATCC 53516] Length = 222 Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 110/222 (49%), Gaps = 8/222 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGK-GE 58 M ++D +++ I ++G GF EF+ L SS+ D+ ++ L GK G Sbjct: 1 MICCVEDDKSIRELIIYALNNEGYEAMGFGDYNEFKSTLYSSSI-DLIILDIMLPGKSGL 59 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +L+ R +P++ ++ + + DSG DD + KP E+LARV A+ RR Sbjct: 60 DILKEIRNNEKTKSIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRALLRR 119 Query: 119 LKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +S +++ I + D R V GE L +E +L YL++N GK + + I + Sbjct: 120 SSLSKTKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENIMTK 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I+G FD E V+ HI+ LR+KL+N + + R LGY Sbjct: 180 IWG-FDFEGESRTVDVHIATLRQKLKNASSI--IKTIRNLGY 218 >gi|187918765|ref|YP_001887796.1| two component winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717203|gb|ACD18426.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 232 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 75/141 (53%), Gaps = 3/141 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ R VP++ ++ S + F +G DD V KP RE++AR+ A+ RR Sbjct: 63 LARLRRKRDNVPVLMLTANGSTDDKVACFSAGADDYVVKPFDARELVARIKALIRRQAAG 122 Query: 123 N--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E G +R D R+ +Q E PL RRE ILE LM +GK V+K+ + ++ L Sbjct: 123 DKGQSIECGDLRYLFDSREFMLQSEPLPLRRREHAILETLMLKQGKTVSKSTLMDKVFTL 182 Query: 181 FDEAVEENVVESHISKLRKKL 201 DE + ++ +I +LRK L Sbjct: 183 DDEP-SADAIDIYIHRLRKHL 202 >gi|120598744|ref|YP_963318.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|146293179|ref|YP_001183603.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|120558837|gb|ABM24764.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] gi|145564869|gb|ABP75804.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] gi|319426309|gb|ADV54383.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 219 Score = 82.0 bits (201), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 111/223 (49%), Gaps = 14/223 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL---IGKGE 58 +L++D L+ G G+ ++ NS +++ LQ E SAI L G G+ Sbjct: 3 IMLVEDNELLAQGICLSLAKLGMQVDHLNS--YQQALQGVKNETFSAIVLDLGLPDGNGK 60 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +L+ R + +P I ++ + T L+ D G DD + KP RE+ AR+ AI RR Sbjct: 61 DLLKAWR--QQGISIPTIVLTANTNFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRR 118 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +N G + + + RD + + L RRE ++L L + G+ + + Q+ Sbjct: 119 QYGLDHNSLIVGALCIDLNTRDVTFREQNIQLSRREFQLLLELAQSAGRVLTRGQLEQLT 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 YG +DE V N +E HI LRKKL N+L + + R +GY++ Sbjct: 179 YG-WDE-VGSNSIEVHIHHLRKKLANEL----IKTVRGIGYTL 215 >gi|330962432|gb|EGH62692.1| DNA-binding response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 227 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 9/220 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVL 61 +L++D L+ +G IA G G ++E + E + +AR +V ++ L K G +L Sbjct: 4 LLVEDDKLIAEGVIAGLGAQGFNVEHVINAAGAEAMLLAARFEVMILDLGLPDKDGLTLL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 L R H +P++ ++ S+ + +G DD + KP RE+ AR+ ++RR L Sbjct: 64 RLLRERSFH--LPVLILTARDSIADRVAGLQAGGDDYLLKPFDLRELAARLHTLHRRFLG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S N + G + + R+ + GE L RRE+ +L+ L+ ++G+ V+ Q+ A+YG Sbjct: 122 RSTNLIQHGSLGIDPTTRETFLAGEPIDLSRREQSLLKALLDSKGRIVSADQLKDAVYGF 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D+ VE N + HI LR+KL N + V + R LGY I Sbjct: 182 ADD-VESNALNVHIHNLRRKLGNNI----VHTVRGLGYRI 216 >gi|221134973|ref|ZP_03561276.1| response regulator in two-component regulatory system with PhoQ [Glaciecola sp. HTCC2999] Length = 224 Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 75/131 (57%), Gaps = 2/131 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD + KP HH+E+LARV A+ RR +++ GPI++ + ++ + L Sbjct: 91 LDAGADDYLTKPFHHQELLARVNALIRRSSGHASSELTCGPIQLHLTQQKVKIDDQELEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 E ++LEYLM NR K ++KT++ IY D ++ NV+E + +LRKK+ P Sbjct: 151 TAYEYKVLEYLMLNRDKVISKTELTEHIYDQ-DFDLDSNVIEVFVGRLRKKIDPTNTLKP 209 Query: 210 VDSKRFLGYSI 220 +++ R GY + Sbjct: 210 IETLRGRGYRL 220 >gi|146280784|ref|YP_001170937.1| two-component response regulator PhoP [Pseudomonas stutzeri A1501] gi|145568989|gb|ABP78095.1| two-component response regulator PhoP [Pseudomonas stutzeri A1501] gi|327479051|gb|AEA82361.1| two-component response regulator PhoP [Pseudomonas stutzeri DSM 4166] Length = 225 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 109/218 (50%), Gaps = 5/218 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ G+ G ++ + E + D++ I+ L G L+ Sbjct: 4 LVVEDEALLRHHLQTRLGESGHIVDAVPNAEEALYQTHEFNHDLAVIDLGL--PGISGLD 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R +R+ + P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR Sbjct: 62 LIRQLRSRGKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSSG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E GP+ + + + GE L E RILEYLM ++ + VAK ++ +Y Sbjct: 122 FTQATIEAGPLLLDLNRKQATANGEPLALTAYEYRILEYLMRHQQQVVAKERLMEQLYS- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL + P+++ R LGY Sbjct: 181 GDEERDPNVIEVLVGRLRRKLEAQCAMKPIETVRGLGY 218 >gi|288818807|ref|YP_003433155.1| two component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|288788207|dbj|BAI69954.1| two component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|308752393|gb|ADO45876.1| two component transcriptional regulator, winged helix family [Hydrogenobacter thermophilus TK-6] Length = 218 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 59/165 (35%), Positives = 85/165 (51%), Gaps = 7/165 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE+VL+ R + + P++ ++ L +D F G DD + KP H E+LARV AI Sbjct: 59 GEEVLKSLR--ESGVKTPVLTLTVVSDLFKKVDLFALGADDYLTKPFHLEELLARVRAII 116 Query: 117 RRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR S + E G +R+ + + V G+ PL E +LEYL NRG+ V++ +I Sbjct: 117 RRSSGSTSDIMELGEVRIEMNKKRVLVNGQEVPLTATEYTVLEYLCLNRGRYVSREEIIE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E E N VE IS++RKKL K D + S R GY + Sbjct: 177 RCLSYRYEP-ESNTVEVFISRIRKKLGIK---DFIKSSRGFGYRV 217 >gi|319785548|ref|YP_004145024.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171436|gb|ADV14974.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 224 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 87/163 (53%), Gaps = 2/163 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ + +PR+ H VP+I ++ L + D+G DD + KP E++AR+ A++ Sbjct: 57 GDGLSLIPRLRALHLDVPVIALTALSGLDDRVAGLDAGADDYMVKPFATVELVARLNALH 116 Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR N+ G + R+ V+ + LPRRER +LE L+ G+ + + + Sbjct: 117 RRSFTTRANQVMVGRLTYDFRHREALVEDQALELPRRERLVLETLIRRPGRTIMRGALEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 A+Y L DE + N +++HIS+LR+KL + + + R LGY Sbjct: 177 AVYALDDE-IGSNALDAHISRLRRKLDDVAAGIEIRAIRNLGY 218 >gi|170722714|ref|YP_001750402.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169760717|gb|ACA74033.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 227 Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 111/221 (50%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D L+ G A G++++ + + +A+ DV ++ L E L Sbjct: 3 VLLCEDDDLIASGICAGLTAQGLTVDRVANAGAARAMLQAAQFDVMILDLGL--PDEDGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R +P++ ++ ++ +D +G DD + KP RE+ AR+ + RR+ Sbjct: 61 KLLRRLRQQGIDLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N E GP+R + + G+ L RRE+ +L+ L+ N G+ ++ Q+ +YG Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE VE N + HI LR+KL N + V++ R LGY + Sbjct: 181 FSDE-VESNALNVHIHHLRRKLGNSI----VETVRGLGYRL 216 >gi|163815763|ref|ZP_02207134.1| hypothetical protein COPEUT_01943 [Coprococcus eutactus ATCC 27759] gi|158448904|gb|EDP25899.1| hypothetical protein COPEUT_01943 [Coprococcus eutactus ATCC 27759] Length = 239 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 90/161 (55%), Gaps = 6/161 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + + + + +I +S + ++ D+G +D + KP H +E+ AR+ ++ RR V Sbjct: 76 LKELRQQNEETKVIILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKFVQ 135 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E+G I+ + R+ +GE PL R+E ILEYL+ N G+ V++ ++ ++ Sbjct: 136 KDVCLESGGIKFDTIKREAYAKGEKVPLTRKENGILEYLLLNLGRPVSQEELMEHVW--- 192 Query: 182 DEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +V+ + H+S LR+KL+ LG+DP+ +K GY I Sbjct: 193 DASVDSFSGAIRVHMSSLRRKLKAVLGYDPILNKVGEGYKI 233 >gi|256545445|ref|ZP_05472807.1| transcriptional regulator FeuP [Anaerococcus vaginalis ATCC 51170] gi|256398841|gb|EEU12456.1| transcriptional regulator FeuP [Anaerococcus vaginalis ATCC 51170] Length = 224 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 87/150 (58%), Gaps = 6/150 (4%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GP 130 + ++ +S +Q ++ D+G +D + KP H E+ ARV ++ RR + NN + Sbjct: 72 ETKVLILSARSQIQDKVEGLDAGANDFLQKPFHLDELKARVRSLTRRNFIQNNTELSFDK 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--EN 188 I+ S R ++ + L R+E ILEYL+ N+G+ V++ ++ ++ D +V+ N Sbjct: 132 IKFDSKNRTIFIEDKELKLTRKESGILEYLLLNQGRPVSQEELIDHVW---DSSVDLLSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + HIS LRKKL+ +LG+DP++++ +GY Sbjct: 189 SIRVHISALRKKLKQELGYDPIENRIGIGY 218 >gi|104780534|ref|YP_607032.1| transcriptional regulatory protein PhoP [Pseudomonas entomophila L48] gi|95109521|emb|CAK14222.1| transcriptional regulatory protein PhoP [Pseudomonas entomophila L48] Length = 225 Score = 81.3 bits (199), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ G+ G ++ + E + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLFTRLGEGGHVVQAVANAEEALYQAEQYNHDLAVIDLGL--PGMSGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R+ Q P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR Sbjct: 61 DLIRQLRSLGQTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+ + + + + L E RILEYLM + + VAK ++ +Y Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDDAPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL GF P+D+ R LGY Sbjct: 181 -DDEERDPNVIEVLVGRLRRKLEGDNGFKPIDTVRGLGY 218 >gi|295107699|emb|CBL05242.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 230 Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 6/134 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAI-YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G +D + KP H E+ AR+ ++ RR N G + + R V GE L Sbjct: 97 LDAGANDYLTKPFHLDELAARIRSLTLRRFAQDNIVLTCGKLSFDTKARIASVGGEALSL 156 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRNKLGF 207 R+E ILEYLM N+G+ V++ ++ ++ D +V N HIS LRKKLR+ LG+ Sbjct: 157 TRKETGILEYLMLNQGRPVSQEELIEHVW---DSSVNSFSNATRVHISSLRKKLRSALGY 213 Query: 208 DPVDSKRFLGYSID 221 DP+ ++ GY ++ Sbjct: 214 DPIRNRIGEGYVME 227 >gi|257790535|ref|YP_003181141.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|257474432|gb|ACV54752.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] Length = 224 Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 6/134 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAI-YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G +D + KP H E+ AR+ ++ RR N G + + R V GE L Sbjct: 91 LDAGANDYLTKPFHLDELAARIRSLTLRRFAQDNIVLTCGKLSFDTKARIASVGGEALSL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRNKLGF 207 R+E ILEYLM N+G+ V++ ++ ++ D +V N HIS LRKKLR+ LG+ Sbjct: 151 TRKETGILEYLMLNQGRPVSQEELIEHVW---DSSVNSFSNATRVHISSLRKKLRSALGY 207 Query: 208 DPVDSKRFLGYSID 221 DP+ ++ GY ++ Sbjct: 208 DPIRNRIGEGYVME 221 >gi|126174120|ref|YP_001050269.1| two component transcriptional regulator [Shewanella baltica OS155] gi|217973566|ref|YP_002358317.1| winged helix family two component transcriptional regulator [Shewanella baltica OS223] gi|304411340|ref|ZP_07392954.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307305338|ref|ZP_07585086.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|125997325|gb|ABN61400.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS155] gi|217498701|gb|ACK46894.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] gi|304350195|gb|EFM14599.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306911641|gb|EFN42066.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] Length = 219 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 14/223 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL---IGKGE 58 +L++D L+ G G+ ++ NS +++ LQ E SAI L G G+ Sbjct: 3 IMLVEDNELLAQGICLSLAKLGMQVDHLNS--YQQALQGVKNESFSAIVLDLGLPDGNGK 60 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++L+ R + +P I ++ T L+ D G DD + KP RE+ AR+ AI RR Sbjct: 61 ELLKAWR--QQGVSIPTIVLTANTDFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRR 118 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +N G + + + R+ + + L RRE ++L L + G+ + ++Q+ Sbjct: 119 QYGLDHNSLIIGALCIDLNTREVTFRDQNVLLSRREFQLLLELAQSAGRVLTRSQLEQLT 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 YG +DE V N +E HI LRKKL N+L + + R +GY++ Sbjct: 179 YG-WDE-VGSNSIEVHIHHLRKKLANEL----IKTVRGIGYTL 215 >gi|16264624|ref|NP_437416.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] gi|307303521|ref|ZP_07583275.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307318628|ref|ZP_07598061.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|15140762|emb|CAC49276.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] gi|306895655|gb|EFN26408.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306902912|gb|EFN33504.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 223 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 114/223 (51%), Gaps = 13/223 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D + + D G L+G ++L E ++ D+ ++ L G G ++ Sbjct: 3 LLLVEDSPRLTELINETMHDAGWRLDGVSTLRDAEAAIAAREHDLVLLDLGLPDGDGLQL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ R R H +P++ I+ S+ + D+G DD + KP HHRE+L+R A+ RR Sbjct: 63 LQWIR--REHVGLPVLIITARGSVDERIAGLDAGADDYLVKPFHHRELLSRCRAMLRR-- 118 Query: 121 VSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N A E G +R + +G V PLP RER ++E L+ G+ V K ++ + Sbjct: 119 --NPNAIQPVLEAGALRYDPATAELTCEGAVLPLPPRERSLIEILLREVGRVVPKRRLET 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 A+ + + + N +E +S++RK+L++ +++ R +GY Sbjct: 177 ALSE-YGQELSSNALELAVSRVRKRLQSVETGVQIETVRGIGY 218 >gi|239993470|ref|ZP_04713994.1| response regulator in two-component regulatory system with PhoQ [Alteromonas macleodii ATCC 27126] Length = 224 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 +A P++ ++ Q ++ D+G DD + KP H+ E+LAR A+ RR +N Sbjct: 68 QADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALIRRASGQANPTI 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + GPI + + + + G+ L E +++EYLM N K ++KT++ IY D ++ Sbjct: 128 QFGPISLDTVSEELSLNGQALDLTAYEYKVMEYLMLNPQKVISKTELTEHIYDQ-DFDLD 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 NV+E + +LRKKL P+++ R GY I+ Sbjct: 187 SNVIEVFVGRLRKKLDPTGELKPIETLRGRGYRIN 221 >gi|117920330|ref|YP_869522.1| two component transcriptional regulator [Shewanella sp. ANA-3] gi|117612662|gb|ABK48116.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 219 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 109/224 (48%), Gaps = 16/224 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL---IGKGE 58 +L++D L+ G G+ ++ +S +++ L E SAI L G G+ Sbjct: 3 IMLVEDNELLAQGICLSLAKMGMQVDHLSS--YQQALVGIKNETFSAIVLDLGLPDGNGK 60 Query: 59 KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 EL + RA +P I ++ T L+ D G DD + KP RE+ AR+ AI R Sbjct: 61 ---ELLKAWRAEGVSIPTIVLTANTDFDTKLECLDIGADDYLGKPFDVRELAARIRAIVR 117 Query: 118 R-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + NN G + + + R+ + + PL RRE ++L L + G+ + + Q+ Sbjct: 118 RQYGLDNNSLNIGALSIDLNTREVSFRDQNVPLSRREFQLLLELAQSAGRVLTRNQLEQL 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 YG +DE V N +E HI LRKKL N D + + R +GY++ Sbjct: 178 TYG-WDE-VGSNSIEVHIHHLRKKLAN----DLIKTVRGIGYTL 215 >gi|167034787|ref|YP_001670018.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166861275|gb|ABY99682.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 227 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 112/221 (50%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D L+ G A G++++ + + +A+ DV ++ L E L Sbjct: 3 VLLCEDDDLIAAGICAGLTAQGLTVDRVGNAADARAMLQAAQFDVMILDLGL--PDEDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R + +P++ ++ ++ +D +G DD + KP RE+ AR+ + RR+ Sbjct: 61 KLLRRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N E GP+R + + G+ L RRE+ +L+ L+ N G+ ++ Q+ +YG Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE VE N + HI LR+KL N + V++ R LGY + Sbjct: 181 FSDE-VESNALNVHIHHLRRKLGNGI----VETVRGLGYRL 216 >gi|330808420|ref|YP_004352882.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376528|gb|AEA67878.1| Putative response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 226 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 114/223 (51%), Gaps = 10/223 (4%) Query: 1 MFVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59 M VL+ +D L+ G +A G+++E + + A DV ++ L E Sbjct: 1 MRVLVCEDDELIASGIVAGLTAQGLTVEHVATASAARAMVGVAEFDVMVLDLGL--PDED 58 Query: 60 VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L+L R +R + P++ ++ S+ +D +G DD + KP RE+ AR+ + RR Sbjct: 59 GLKLLRQLRQQGLETPVLILTARDSVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRR 118 Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + S N E G + R+ + G+ L RRE+ +L+ L+ +RG+ ++ Q+ ++ Sbjct: 119 VAGRSVNLIEHGRLTYDPSSRETTLDGQPVDLSRREQSLLQALLHSRGRVLSTEQLKDSV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 YG F++ +E N + HI LR+KL N + V++ R LGY + Sbjct: 179 YG-FNDELESNALNVHIHHLRRKLGNGI----VETVRGLGYRL 216 >gi|256374991|ref|YP_003098651.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255919294|gb|ACU34805.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 228 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/213 (33%), Positives = 105/213 (49%), Gaps = 16/213 (7%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRII 67 AL + GY DG LEG E + R D+ ++ L G+ G +LE +I Sbjct: 26 ALREQGYQVRVRPDGRDLEG----ELTRF-----RPDLVVLDVMLPGRDGFALLE---VI 73 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R S ++ ++ +Q L D G DD V KP E++ARV+A+ RRL + + + Sbjct: 74 RRGSGAGVVMLTARDGVQDRLRGLDRGADDYVTKPFVLAEVVARVSAVLRRLGRTPSTVQ 133 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + V +D L E R+L YL A RG+ V KTQI +A++G D + Sbjct: 134 IGDLVVDADSAVVVRGNAQVELTATELRLLRYLAAQRGRVVGKTQILTAVWGYED--YDP 191 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+VE H+S LR+KL G + + R LGY + Sbjct: 192 NLVEVHVSALRRKLEEH-GPRLLHTVRGLGYVL 223 >gi|113970165|ref|YP_733958.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|114047645|ref|YP_738195.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|113884849|gb|ABI38901.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] gi|113889087|gb|ABI43138.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 219 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/224 (29%), Positives = 111/224 (49%), Gaps = 16/224 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL---IGKGE 58 +L++D L+ G G+ ++ +S +++ L E SAI L G G+ Sbjct: 3 IMLVEDNELLAQGICLSLAKLGMQVDHLSS--YQQALVGIKNETFSAIVLDLGLPDGNGK 60 Query: 59 KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 EL + RA +P I ++ T L+ D G DD + KP RE+ AR+ AI R Sbjct: 61 ---ELLKAWRAEGVSIPTIVLTANTDFDTKLECLDIGADDYLGKPFDVRELAARIRAIVR 117 Query: 118 R-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + NN G + + + R+ + + PL RRE ++L L + G+ + ++Q+ Sbjct: 118 RQYGLDNNSLNIGALSIDLNTREVTFRDQNVPLSRREFQLLLELAQSAGRVLTRSQLEQL 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 YG +DE V N +E HI LRKK+ N+L + + R +GY++ Sbjct: 178 TYG-WDE-VGSNSIEVHIHHLRKKMANEL----IKTVRGIGYTL 215 >gi|312962223|ref|ZP_07776715.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311283560|gb|EFQ62149.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 226 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 117/223 (52%), Gaps = 10/223 (4%) Query: 1 MFVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59 M VL+ +D L+ G +A G G ++E + + +A D+ ++ L E Sbjct: 1 MHVLVCEDDELIASGIVAGLGAQGFTVERVATAAAARAMLKAATFDIMVLDLGL--PDED 58 Query: 60 VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L+L + +R+ ++P++ ++ S+ +D +G DD + KP RE+ AR+ + RR Sbjct: 59 GLKLLQQLRSQGLEIPVLILTARDSVTNRVDGLQAGADDYLLKPFDLRELAARLQTLLRR 118 Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + S N E G + R+ + G+ L RRE+ +L+ L+ N+G+ ++ Q+ ++ Sbjct: 119 MAGRSVNLIEHGRLSYDPSSRETLLGGQPVDLSRREQALLQALLHNKGRVLSSEQLKDSV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 YG F++ +E N + HI LR+KL N + V++ R LGY + Sbjct: 179 YG-FNDELESNALNVHIHHLRRKLGNGI----VETVRGLGYRL 216 >gi|134101321|ref|YP_001106982.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291008141|ref|ZP_06566114.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133913944|emb|CAM04057.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 225 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 109/220 (49%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 ++++D A +++ A G ++E E + + R DV ++ L G+ G V Sbjct: 5 VLVVEDSAPIREAVAAGLRTAGHTVELRPDGRGVEEVVRTFRPDVVVLDLMLPGRDGFAV 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE +R+ + + ++ ++ S+ L SG DD V KP E++ARV A+ RR+ Sbjct: 65 LE---TLRSGADLGVVILTARDSVPDRLRGLRSGADDYVVKPFDTAELVARVEAVLRRMG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E + + D G V L E R+L YL+A RG+ V+K QIF+ ++G Sbjct: 122 RVAATVEVDDLVIDQDAGVAVRAGSVLALTATEWRLLCYLVAQRGRVVSKLQIFTGVWGY 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+ N+VE H+S LR+KL G V + R GY++ Sbjct: 182 QSLDVDLNLVEVHVSALRRKLEQH-GRRLVHTVRGRGYAL 220 >gi|154498426|ref|ZP_02036804.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC 29799] gi|150272494|gb|EDM99679.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC 29799] Length = 226 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 3/162 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R SQVP+I ++ ++ + DSG DD + KP E+LAR+ A R+ Sbjct: 61 MEVLRRLRRESQVPVIMVTARDTVVDKVSGLDSGADDYITKPFEIEELLARIRAALRKRP 120 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V A GP+ + + + V+G L RRE +L YL+ N+ K +++ + ++ Sbjct: 121 VRQESAVLTAGPLTMDPERHEVTVKGTPVELTRREFDLLRYLLENKEKVISRESLLDNVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G FD E N V+ +I LR K+ G + + R +GY I Sbjct: 181 G-FDFVGETNAVDVYIRFLRAKIDEAFGIKLIHTVRGVGYVI 221 >gi|153000445|ref|YP_001366126.1| two component transcriptional regulator [Shewanella baltica OS185] gi|160875042|ref|YP_001554358.1| two component transcriptional regulator [Shewanella baltica OS195] gi|151365063|gb|ABS08063.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|160860564|gb|ABX49098.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|315267274|gb|ADT94127.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 219 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 14/223 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL---IGKGE 58 +L++D L+ G G+ ++ NS +++ LQ E SAI L G G+ Sbjct: 3 IMLVEDNELLAQGICLSLAKLGMQVDHLNS--YQQALQGVKNESFSAIVLDLGLPDGNGK 60 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +L+ R + +P I ++ T L+ D G DD + KP RE+ AR+ AI RR Sbjct: 61 DLLKAWR--QQGVSIPTIVLTANTDFDTKLECLDMGADDYLGKPFDVRELAARIRAIVRR 118 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +N G + + + R+ + + L RRE ++L L + G+ + ++Q+ Sbjct: 119 QYGLDHNSLIIGALCIDLNTREVTFRDQNVLLSRREFQLLLELAQSAGRVLTRSQLEQLT 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 YG +DE V N +E HI LRKKL N+L + + R +GY++ Sbjct: 179 YG-WDE-VGSNSIEVHIHHLRKKLANEL----IKTVRGIGYTL 215 >gi|325272764|ref|ZP_08139111.1| winged helix family two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324102104|gb|EGB99603.1| winged helix family two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 225 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ G+ G +E E + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAGQYHFDLAIIDLGL--PGISGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL +R+ + P++ ++ + Q ++ +G DD + KP E+ AR+ A+ RR Sbjct: 61 ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+ + + + + + L E RILEYLM + + VAK ++ +Y Sbjct: 121 GFTQSTIAAGPLVLDLNRKQASLDAQPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E I +LR+KL + GF P+D+ R LGY Sbjct: 181 -GDEERDPNVIEVLIGRLRRKLEGEQGFKPIDTVRGLGY 218 >gi|328544531|ref|YP_004304640.1| Response regulators consisting of a chemotaxis protein CheY domain and a winged-helix DNA-binding domain [polymorphum gilvum SL003B-26A1] gi|326414273|gb|ADZ71336.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Polymorphum gilvum SL003B-26A1] Length = 224 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 8/160 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L R R ++P++ ++ + D+G DD V KP H E+LARV A+ RR Sbjct: 63 LERWRRDGRKMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAAGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 ++N E GP+R+ V G L E R+L YLM ++GK +++T++ +Y Sbjct: 123 ASNEIECGPVRLDLRAGRVTVDGHPIKLTSHEYRLLAYLMHHKGKVISRTELTEHLYDQD 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + N VE + +LRK KLG +P+++ R LGY + Sbjct: 183 FDR--DSNTVEVFVGRLRK----KLGGEPIETIRGLGYRM 216 >gi|70731532|ref|YP_261273.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68345831|gb|AAY93437.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] Length = 225 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 116/223 (52%), Gaps = 10/223 (4%) Query: 1 MFVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GE 58 M VL+ +D L+ G +A G+++E + + A DV ++ L + G Sbjct: 1 MHVLVCEDDELIASGIVAGLTAQGLTVEHVATASAARAMLGVADFDVMVLDLGLPDEDGL 60 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 K+L+ R + ++P++ ++ S+ +D +G DD + KP RE+ AR+ + RR Sbjct: 61 KLLKQQR--QQGLEIPVLILTARDSVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRR 118 Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + S N E G + R+ + G+ L RRE+ +L+ L+ NRG+ ++ Q+ ++ Sbjct: 119 VAGRSVNLIEHGRLTYDPSTRETLLGGQPVDLSRREQSLLQALLHNRGRVLSSEQLKDSV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 YG F++ +E N + HI LR+KL N + V++ R LGY + Sbjct: 179 YG-FNDELESNALNVHIHHLRRKLGNGI----VETVRGLGYRL 216 >gi|212697044|ref|ZP_03305172.1| hypothetical protein ANHYDRO_01609 [Anaerococcus hydrogenalis DSM 7454] gi|212675819|gb|EEB35426.1| hypothetical protein ANHYDRO_01609 [Anaerococcus hydrogenalis DSM 7454] Length = 224 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 88/159 (55%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + + + ++ +S ++ ++ D+G +D + KP H E+ ARV ++ RR + Sbjct: 63 LKNLRKEDEETKVLILSARSQIKDKVEGLDAGANDFLQKPFHLDELKARVRSLTRRNFIQ 122 Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ I S R V GE L R+E ILEYL+ N+G+ +++ ++ ++ Sbjct: 123 KNSEISFDKIEFDSKNRRVFVDGEELKLTRKEIGILEYLLLNQGRPISQEELIEHVW--- 179 Query: 182 DEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +V+ N + HIS LRKKL+NKL +DP++++ +GY Sbjct: 180 DSSVDLLSNSIRVHISALRKKLKNKLNYDPIENRIGVGY 218 >gi|169827681|ref|YP_001697839.1| transcription response regulator-like protein [Lysinibacillus sphaericus C3-41] gi|168992169|gb|ACA39709.1| transcription response regulator-like protein [Lysinibacillus sphaericus C3-41] Length = 220 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 7/162 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119 E+ +++R HS +P+I ++ Q + FD G+DD + KP ++ RV A+ RR Sbjct: 63 EVAKMLRNHSNIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSNH 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K N + V DG V E PL +E IL+ L+ N K + + I ++G Sbjct: 123 KSWGNHLNFNELNVDCDGYKAYVNKEEIPLTTKEFEILQLLLHNEKKVLTREIIVEKVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + E ++++HI LRK KL + + + +GY ID Sbjct: 183 -YDYSGETRMIDTHIKNLRK----KLNLPYIKTVKGIGYKID 219 >gi|325849744|ref|ZP_08170891.1| putative transcriptional regulatory protein CutR [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325479973|gb|EGC83053.1| putative transcriptional regulatory protein CutR [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 224 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 88/159 (55%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + + + ++ +S ++ ++ D+G +D + KP H E+ ARV ++ RR + Sbjct: 63 LKNLRKEDEETKVLILSARSQIKDKVEGLDAGANDFLQKPFHLDELKARVRSLTRRNFIQ 122 Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ I S R V GE L R+E ILEYL+ N+G+ +++ ++ ++ Sbjct: 123 KNSEISFDKIEFDSKNRRVFVDGEELKLTRKEIGILEYLLLNQGRPISQEELIEHVW--- 179 Query: 182 DEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +V+ N + HIS LRKKL+NKL +DP++++ +GY Sbjct: 180 DSSVDLLSNSIRVHISALRKKLKNKLNYDPIENRIGVGY 218 >gi|89068725|ref|ZP_01156111.1| two-component transcriptional regulator [Oceanicola granulosus HTCC2516] gi|89045688|gb|EAR51750.1| two-component transcriptional regulator [Oceanicola granulosus HTCC2516] Length = 244 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 84/152 (55%), Gaps = 2/152 (1%) Query: 52 FLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA 110 L +GE + R++R A P+I + D+ + T + ++G DD + P+ E+ + Sbjct: 53 LLAAEGEATIAQIRLLRSAGCANPIIVLRDFRNSTHTAEALNAGADDDMTIPLKVIELRS 112 Query: 111 RVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 R+ ++ RR K + + T G + + DGRDP V G L RRE I ++L N + V+ Sbjct: 113 RLNSVLRRAKGHASESVTVGEVTAYFDGRDPVVAGTRVRLSRREHAIFQHLALNPNRIVS 172 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 K I+ A+YG+ +E + V++ +I K+RKK+ Sbjct: 173 KAAIYDAVYGMAEEQPLDKVIDVYICKIRKKI 204 >gi|70731816|ref|YP_261558.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens Pf-5] gi|68346115|gb|AAY93721.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens Pf-5] Length = 225 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 108/219 (49%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ D G +E + E + D++ I+ L G G L Sbjct: 3 LLVVEDEALLRHHLQTRLTDSGHVVESVANAEEALYQTEQFNHDLAVIDLGLPGMGG--L 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R + P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR Sbjct: 61 DLIRQLRNRGKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELDARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+ + + + + + L E RILEYLM + + VAK ++ +Y Sbjct: 121 GFTQSTIIAGPLLLDLNRKQASLDEQPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL GF P+D+ R LGY Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLEGPSGFKPIDTVRGLGY 218 >gi|160892841|ref|ZP_02073630.1| hypothetical protein CLOL250_00371 [Clostridium sp. L2-50] gi|156865400|gb|EDO58831.1| hypothetical protein CLOL250_00371 [Clostridium sp. L2-50] Length = 226 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 104/202 (51%), Gaps = 7/202 (3%) Query: 23 GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDY 81 GV E + EE L+ ED I L G +E+ R +R + + +I +S Sbjct: 22 GVGYEVDTCYDGEEALECILTEDYDLIVLDLNLPGMDGMEILRELRRENEETKVIILSAR 81 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDP 140 + ++ D+G +D + KP H +E+ AR+ ++ RR V + E+G I + R+ Sbjct: 82 GQIADKVEGLDAGANDYMEKPFHIKELEARIRSLTRRKFVQKDVCLESGGISFDTIKREA 141 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--ENVVESHISKLR 198 +G+ L R+E ILEYL+ N G+ V++ ++ ++ D +V+ + H+S LR Sbjct: 142 YAKGKKVSLTRKENGILEYLLLNLGRPVSQEELMEHVW---DASVDSFSGAIRVHMSSLR 198 Query: 199 KKLRNKLGFDPVDSKRFLGYSI 220 +KL+ LG+DP+ +K GY I Sbjct: 199 RKLKAVLGYDPILNKVGEGYKI 220 >gi|254512408|ref|ZP_05124475.1| DNA-binding response regulator CtrA [Rhodobacteraceae bacterium KLH11] gi|221536119|gb|EEE39107.1| DNA-binding response regulator CtrA [Rhodobacteraceae bacterium KLH11] Length = 238 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 78/151 (51%), Gaps = 4/151 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL RI R + P++ +S ++ + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRIARV--ETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + TG + V D + EV G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSVIHTGQVAVNLDAKTVEVDGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 +YG DE E +++ I KLRKKL N G Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSNATG 206 >gi|240173513|ref|ZP_04752171.1| two-component sensory transduction protein RegX3 [Mycobacterium kansasii ATCC 12478] Length = 227 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 104/208 (50%), Gaps = 18/208 (8%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + + + A D S + L+ G ++ + +RA S VP+I ++ S Sbjct: 24 EGFEATVVTDGPAALAEFDRSGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138 + + G DD V KP RE++AR+ A+ RR + S+ E+GP+R+ + Sbjct: 84 EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDAESSDGILESGPVRMDVERH 143 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 V GEV LP +E +LEYLM N G+ + + Q+ ++G D + ++ H+ Sbjct: 144 VVSVNGEVITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 198 Query: 199 KKLRNKLGFDPVD-----SKRFLGYSID 221 K+LR+K+ DP + + R LGY ++ Sbjct: 199 KRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|154500437|ref|ZP_02038475.1| hypothetical protein BACCAP_04109 [Bacteroides capillosus ATCC 29799] gi|150270789|gb|EDM98081.1| hypothetical protein BACCAP_04109 [Bacteroides capillosus ATCC 29799] Length = 224 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 2/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R ++ ++ +S SL ++ D G DD + KP E+ ARV ++ RR V + A Sbjct: 68 REKPELRVLILSARSSLANRVEGLDLGADDYLTKPFELEELEARVRSLLRRNFVPQSTAV 127 Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 T GP+ + + R+ PL R+E ILEYLM + GK V++ ++ I+ Sbjct: 128 TAGPLVLDTRKREISADSTPLPLTRKEFEILEYLMLHPGKTVSQEELLEHIWDTESNPFS 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +V HIS LRKKL+ LG DP+ +K GY ++ Sbjct: 188 HSV-RMHISSLRKKLKEALGHDPIATKIGQGYYLE 221 >gi|116618899|ref|YP_819270.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097746|gb|ABJ62897.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 233 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 13/223 (5%) Query: 2 FVLIDDRALVKD---GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 +LI+D + D G++ F D +G + EFE A D+ I + L+ GE Sbjct: 7 ILLIEDDVNLADNVVGFLQDFADINAVTDGLDG-EFE---AQEAPYDL--IISDLMLPGE 60 Query: 59 KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LEL + +RA+ + P++ ++ SL ++ F+ G DD + KP H E+L RV A+ R Sbjct: 61 TGLELIKNLRANDVETPVLILTAKTSLDDKIEGFNVGADDYLTKPFHREELLVRVKALLR 120 Query: 118 RLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R V +N G + + + R +V G+ L +E IL YL N+ V + QIF Sbjct: 121 RSGVYSEDNTLAVGDVMINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVTRDQIFD 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G+ D NVV +++ LR+KL + + + R +G+ Sbjct: 181 RVWGI-DSDTTINVVNIYLNNLRRKLEAVGQNNLIKTLRNIGF 222 >gi|77460156|ref|YP_349663.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384159|gb|ABA75672.1| two-component system response regulator [Pseudomonas fluorescens Pf0-1] Length = 226 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 8/222 (3%) Query: 1 MFVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59 M VL+ +D L+ G +A G+++E N+ + A DV ++ L + + Sbjct: 1 MHVLVCEDDELIASGIVAGLTAQGLTVEHVNTASKARAILKVAEFDVMVLDLGLPDE-DG 59 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + L ++ + ++P++ ++ S+ +D SG DD + KP RE+ AR+ + RR+ Sbjct: 60 LKLLQQLRQQGLEIPVLILTARDSVTDRVDGLQSGADDYLLKPFDLRELFARLQTLLRRV 119 Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S N E G + R+ + G L RRE+ +L+ L+ NRG+ ++ Q+ ++Y Sbjct: 120 AGRSVNLIEHGALTYDPSSRETTLAGRPVDLSRREQSLLQALLHNRGRVLSTEQLKDSVY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G F++ +E N + HI LR+KLG V++ R LGY + Sbjct: 180 G-FNDELESNALNVHI----HHLRSKLGKGIVETVRGLGYRL 216 >gi|227431176|ref|ZP_03913231.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353071|gb|EEJ43242.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 235 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 112/223 (50%), Gaps = 13/223 (5%) Query: 2 FVLIDDRALVKD---GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 +LI+D + D G++ F D +G + EFE A D+ I + L+ GE Sbjct: 9 ILLIEDDVNLADNVVGFLQDFADINAVTDGLDG-EFE---AQEAPYDL--IISDLMLPGE 62 Query: 59 KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LEL + +RA+ + P++ ++ SL ++ F+ G DD + KP H E+L RV A+ R Sbjct: 63 TGLELIKNLRANDVETPVLILTAKTSLDDKIEGFNVGADDYLTKPFHREELLVRVKALLR 122 Query: 118 RLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R V +N G + + + R +V G+ L +E IL YL N+ V + QIF Sbjct: 123 RSGVYSEDNTLAVGDVMINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVTRDQIFD 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G+ D NVV +++ LR+KL + + + R +G+ Sbjct: 183 RVWGI-DSDTTINVVNIYLNNLRRKLEAVGQNNLIKTLRNIGF 224 >gi|290769853|gb|ADD61625.1| putative protein [uncultured organism] Length = 225 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 85/155 (54%), Gaps = 6/155 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130 + P++ +S + ++ D+G +D + KP H E+ ARV ++ RR + + G Sbjct: 72 ETPVLILSARSEISDKVEGLDAGANDYLAKPFHLAELEARVRSLTRRQFIQRDVCLRCGR 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--EN 188 + + R G+ PL R+E +LEYL+ ++G+ V++ ++ ++ D +V+ N Sbjct: 132 LTFDTKSRLAMADGQPIPLTRKESGVLEYLLLHQGRPVSQEELIEHVW---DSSVDAFSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + HIS LRKKLR LG+DP+ ++ GY ++ N Sbjct: 189 SIRVHISALRKKLRTALGYDPIRNRIGEGYELEEN 223 >gi|167648501|ref|YP_001686164.1| two component transcriptional regulator [Caulobacter sp. K31] gi|167350931|gb|ABZ73666.1| two component transcriptional regulator, winged helix family [Caulobacter sp. K31] Length = 230 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 90/168 (53%), Gaps = 6/168 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R +R S+ VP+I ++ + D+G DD V KP E+ ARV A+ R Sbjct: 62 IEVCRRLRGRSETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMIELTARVRAVLR 121 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R++ ++++R G I + + QG+ L E R+L+YLM + G+ ++ Q+ Sbjct: 122 RIRPGLADDRITVGDIVIDRVAHRVKRQGKEVHLGPTEFRLLDYLMQHPGRVFSREQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 A++G D VE V+ HI +LRK L + DP+ + R GYS+D + Sbjct: 182 AVWG-SDVYVEARTVDVHIGRLRKALNGDVDGDPIRTVRSAGYSLDLD 228 >gi|292670066|ref|ZP_06603492.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541] gi|292648254|gb|EFF66226.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541] Length = 234 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 102/198 (51%), Gaps = 9/198 (4%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQT 86 EG + +E +Q + D+ ++ L G +E+ R +RA + VP+I ++ +++ Sbjct: 40 EGNGTRAYERIIQENF--DIILLDVML--PGMDGIEICRRVRAVTNVPIIMLTAKDAVED 95 Query: 87 TLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS----NNRAETGPIRVFSDGRDPEV 142 ++ D G DD + KP E++AR+ RR +S ++R + +F + +V Sbjct: 96 RVEGLDIGADDYITKPFAVPELIARLKNALRRRDISTEDASDRLTVKNLIMFLSRYEVQV 155 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 GE L +RE +LEYL+ N+ + + QI ++G FD E NVV+ +I LR KL Sbjct: 156 DGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVWG-FDYTGETNVVDVYIRYLRAKLD 214 Query: 203 NKLGFDPVDSKRFLGYSI 220 ++ + + R +GY + Sbjct: 215 DRFNKKYIYTVRGVGYVV 232 >gi|238927716|ref|ZP_04659476.1| response regulator [Selenomonas flueggei ATCC 43531] gi|238884432|gb|EEQ48070.1| response regulator [Selenomonas flueggei ATCC 43531] Length = 228 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 102/199 (51%), Gaps = 9/199 (4%) Query: 26 LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85 +EG + +E +Q + D+ ++ L G +E+ R +R S VP+I ++ +++ Sbjct: 33 IEGNGTRAYERIIQENF--DIILLDVML--PGMDGIEICRRVRTVSNVPIIMLTARDAVE 88 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS----NNRAETGPIRVFSDGRDPE 141 ++ D G DD + KP E++ARV RR +S ++R + +F + + Sbjct: 89 DRVEGLDIGADDYITKPFAVPELIARVRNALRRRDISTDDASDRLTVKNLIMFLSRYEVQ 148 Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 V GE L +RE +LEYL+ N+ + + QI ++G FD E NVV+ +I LR KL Sbjct: 149 VDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVWG-FDYTGETNVVDVYIRYLRAKL 207 Query: 202 RNKLGFDPVDSKRFLGYSI 220 ++ + + R +GY + Sbjct: 208 DDRFHKKYIYTVRGVGYVV 226 >gi|221215180|ref|ZP_03588146.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD1] gi|221164864|gb|EED97344.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD1] Length = 224 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 60 LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++R E GP+ S R + GE PL RER +LE L+ G+ + K + I+ Sbjct: 120 LGHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LRKKL N G V + R LGY ++ Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENS-GVAIV-TLRGLGYLLE 219 >gi|26987921|ref|NP_743346.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24982631|gb|AAN66810.1|AE016310_2 transcriptional regulatory protein PhoP [Pseudomonas putida KT2440] Length = 225 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 108/219 (49%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ G+ G +E E + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAEQYHFDLAIIDLGL--PGISGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL +R+ + P++ ++ + Q ++ +G DD + KP E+ AR+ A+ RR Sbjct: 61 ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+ + + + + + L E RILEYLM + + VAK ++ +Y Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDEQALALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL + GF P+D+ R LGY Sbjct: 181 -GDEERDPNVIEVLVGRLRRKLEGERGFKPIDTVRGLGY 218 >gi|161520888|ref|YP_001584315.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160344938|gb|ABX18023.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] Length = 222 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 58 LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 117 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++R E GP+ S R + GE PL RER +LE L+ G+ + K + I+ Sbjct: 118 LGHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIF 177 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LRKKL N G V + R LGY ++ Sbjct: 178 GL-DESVNADAIEIYVYRLRKKLENS-GVAIV-TLRGLGYLLE 217 >gi|189352929|ref|YP_001948556.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|189336951|dbj|BAG46020.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] Length = 224 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 60 LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++R E GP+ S R + GE PL RER +LE L+ G+ + K + I+ Sbjct: 120 LGHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LRKKL N G V + R LGY ++ Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENS-GVAIV-TLRGLGYLLE 219 >gi|167584532|ref|ZP_02376920.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 223 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 60 LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L +++ E GP+ S R + GE PL RER +LE L+ G+ + K + I+ Sbjct: 120 LGHEHSKVECGPLAFDSVDRSFRLAGEALPLTPRERSVLEVLILRNGRAINKETLSEKIF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LRKKL N G V + R LGY ++ Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENS-GVAIV-TLRGLGYLLE 219 >gi|253579461|ref|ZP_04856731.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849559|gb|EES77519.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 222 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 104/207 (50%), Gaps = 10/207 (4%) Query: 22 DGVSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIG 77 +G+ ++G+ + + EE L+ E+ I L G LE+ R R ++ P++ Sbjct: 18 EGLRMDGYETDTCFDGEEGLELCMTENYDLILLDLNLPGIDGLEILRQFRTFNTNTPVLI 77 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSD 136 +S +Q ++ D G +D + KP H E+ AR+ ++ RR + + I + Sbjct: 78 LSARVQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKFIQEDVCLRCSRITFDTR 137 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESHI 194 R+ V G L R+E +LEY + +R + ++ ++ I L+D +V N + HI Sbjct: 138 TREASVDGTPLALTRKESALLEYFLLHRNRIISPEEM---IEHLWDGSVNSFSNSIRVHI 194 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSID 221 S LRKKLR LG+DP+ +K GY ++ Sbjct: 195 SSLRKKLRTALGYDPIQNKIGQGYILE 221 >gi|226324678|ref|ZP_03800196.1| hypothetical protein COPCOM_02463 [Coprococcus comes ATCC 27758] gi|225207126|gb|EEG89480.1| hypothetical protein COPCOM_02463 [Coprococcus comes ATCC 27758] Length = 237 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 116/227 (51%), Gaps = 15/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR----EDVSAIEAFLIGKG 57 ++I+D LV+ G + D + L+G+N++ + ++ R E + + + G Sbjct: 5 ILVIEDDDLVRQGIV-----DILELKGWNAVAAKSCSEALVRIRGEEYMLYVLDMKLPDG 59 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 ++ L R IR ++ P++ +S Y S + ++ F++G +D V KP E +AR+ A+ R Sbjct: 60 NGIM-LCREIRRYTDNPILFLSAYDSEEFIVEGFEAGANDYVIKPFRTFEFIARIKALLR 118 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R + N + I+ D + Q G L R E +IL L+AN VA+ Sbjct: 119 RTGMQNGKKVKKGIKSGEYELDLQKQILQKDGVRIDLTRTEYQILCSLLANAPNLVAREF 178 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + I+ + +++N + H+++LRKKL + DP+++KR +GY+ Sbjct: 179 LLDTIWDFNENYIDDNTLSVHMNRLRKKLTAENEQDPIETKRGVGYA 225 >gi|169631126|ref|YP_001704775.1| sensory transduction protein RegX3 [Mycobacterium abscessus ATCC 19977] gi|169243093|emb|CAM64121.1| Sensory transduction protein RegX3 [Mycobacterium abscessus] Length = 228 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 108/223 (48%), Gaps = 27/223 (12%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ A +DG S EFE A D+ ++ L G ++ + +RA Sbjct: 21 LRKEGFEATIVNDGPSALA----EFER-----AGADIVLLDLMLPGMSGT--DVCKQLRA 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--- 126 S VP+I ++ S + + G DD V KP RE++AR+ A+ RR S A Sbjct: 70 KSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGSDSEETASGD 129 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E GP+R+ D V GE LP +E +LEYL+ N G+ + + Q+ ++G D Sbjct: 130 GVLEAGPVRMDVDRHTVSVNGEAITLPLKEFDLLEYLIRNSGRVLTRGQLIDRVWG-ADY 188 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221 + ++ H+ K+LR+K+ DP + + R LGY ++ Sbjct: 189 VGDTKTLDVHV----KRLRSKIEADPANPVHLVTVRGLGYKLE 227 >gi|331701040|ref|YP_004397999.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329128383|gb|AEB72936.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 230 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 3/151 (1%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAE 127 H +P++ ++ +L + F+ G DD + KP H E+L RV A+ +R +N Sbjct: 73 HLSMPVLILTAKDTLDDKVHGFELGADDYLTKPFHREELLMRVKALLKRSGHLGDDNTLS 132 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 GP +V R EV G+ L +E +L Y + N + K QIF ++G F+ Sbjct: 133 VGPFKVNLSNRIVEVNGKELALNGKEFDLLVYFIQNPDTIITKDQIFDRLWG-FESETAI 191 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +VVE ++S LRKK++ P+ + R +GY Sbjct: 192 SVVEVYMSNLRKKIKQSSSLQPIKTLRNVGY 222 >gi|171740938|gb|ACB54965.1| PhoP [Pseudomonas fluorescens] Length = 225 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 108/219 (49%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ D G ++ + E + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLQTRLSDSGHVVQAVANAEEALYQVREFNHDLAVIDLGLPGISG--L 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R +R+ + P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR Sbjct: 61 ELIRRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+ + + + + E L E RILEYLM + + VAK ++ +Y Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLGDEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL GF P+D+ R LGY Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLEAPAGFKPIDTVRGLGY 218 >gi|332639030|ref|ZP_08417893.1| two-component response regulator [Weissella cibaria KACC 11862] Length = 231 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 3/161 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L + + +P++ ++ L + F+ G D+ + KP + E+LAR+ + R V Sbjct: 67 LKKAKELYPTLPILMLTAKGELSDKMQGFNLGADEYITKPFYKEELLARLKTLLRHAGVL 126 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E G ++VF D V E L RE +L YLM + G+ V K QIF ++G Sbjct: 127 GQDGALEVGNVQVFIDQHRVLVNNEEISLQGREFGLLVYLMQHVGQIVTKDQIFDRLWG- 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD VVE ++S LRK LRN + + R +GY+++ Sbjct: 186 FDSDTSLTVVEVYMSNLRKNLRNADAQVNIKTLRNVGYTLN 226 >gi|26990917|ref|NP_746342.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24985936|gb|AAN69806.1|AE016619_4 DNA-binding response regulator [Pseudomonas putida KT2440] Length = 227 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +L +D L+ G A G++++ + + +A+ DV ++ L + G K+ Sbjct: 3 VLLCEDDDLIAAGICAGLTAQGLTVDRVGNAADARAMLQAAQFDVMILDLGLPDEDGLKL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R+ +P++ ++ ++ +D +G DD + KP RE+ AR+ + RR+ Sbjct: 63 LH--RLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N E GP+R + + G+ L RRE+ +L+ L+ N G+ ++ Q+ +YG Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQHVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE VE N + HI LR+KL N + V++ R LGY + Sbjct: 181 FSDE-VESNALNVHIHHLRRKLGNGI----VETVRGLGYRL 216 >gi|49081832|gb|AAT50316.1| PA1179 [synthetic construct] Length = 226 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ G+ G ++ E + S D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVIDLGL--PGMSGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R+ + P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR Sbjct: 61 DLIRELRSQGKSFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E GP+ + + + V+ + L E RILEYLM + + VAK ++ +Y Sbjct: 121 GFVQSTIEAGPLVLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL GF P+D+ R GY Sbjct: 181 -DDEERDANVIEVLVGRLRRKLEACGGFKPIDTVRGQGY 218 >gi|15596376|ref|NP_249870.1| two-component response regulator PhoP [Pseudomonas aeruginosa PAO1] gi|107100628|ref|ZP_01364546.1| hypothetical protein PaerPA_01001654 [Pseudomonas aeruginosa PACS2] gi|116049111|ref|YP_792087.1| two-component response regulator PhoP [Pseudomonas aeruginosa UCBPP-PA14] gi|218892857|ref|YP_002441726.1| two-component response regulator PhoP [Pseudomonas aeruginosa LESB58] gi|254234312|ref|ZP_04927635.1| two-component response regulator PhoP [Pseudomonas aeruginosa C3719] gi|254239547|ref|ZP_04932869.1| two-component response regulator PhoP [Pseudomonas aeruginosa 2192] gi|296390450|ref|ZP_06879925.1| two-component response regulator PhoP [Pseudomonas aeruginosa PAb1] gi|313106153|ref|ZP_07792406.1| two-component response regulator PhoP [Pseudomonas aeruginosa 39016] gi|9947104|gb|AAG04568.1|AE004548_2 two-component response regulator PhoP [Pseudomonas aeruginosa PAO1] gi|115584332|gb|ABJ10347.1| two-component response regulator PhoP [Pseudomonas aeruginosa UCBPP-PA14] gi|126166243|gb|EAZ51754.1| two-component response regulator PhoP [Pseudomonas aeruginosa C3719] gi|126192925|gb|EAZ56988.1| two-component response regulator PhoP [Pseudomonas aeruginosa 2192] gi|218773085|emb|CAW28897.1| two-component response regulator PhoP [Pseudomonas aeruginosa LESB58] gi|310878908|gb|EFQ37502.1| two-component response regulator PhoP [Pseudomonas aeruginosa 39016] Length = 225 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 109/219 (49%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ G+ G ++ E + S D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVIDLGLPGMSG--L 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R+ + P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR Sbjct: 61 DLIRELRSQGKSFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E GP+ + + + V+ + L E RILEYLM + + VAK ++ +Y Sbjct: 121 GFVQSTIEAGPLVLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL GF P+D+ R GY Sbjct: 181 -DDEERDANVIEVLVGRLRRKLEACGGFKPIDTVRGQGY 218 >gi|152984274|ref|YP_001349554.1| two-component response regulator PhoP [Pseudomonas aeruginosa PA7] gi|150959432|gb|ABR81457.1| two-component response regulator PhoP [Pseudomonas aeruginosa PA7] Length = 225 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 109/219 (49%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ G+ G ++ E + S D++ ++ L G L Sbjct: 3 LLVVEDEALLRHHLYTRLGEQGHVVDAVPDAEEALYRVSEYHHDLAVVDLGLPGMSG--L 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R+ + P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR Sbjct: 61 DLIRELRSQGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E GP+ + + + V+ + L E RILEYLM + + VAK ++ +Y Sbjct: 121 GFVQSTIEAGPLLLDLNRKQALVEEQPVALTAYEYRILEYLMRHHQQVVAKERLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL GF P+D+ R GY Sbjct: 181 -DDEERDANVIEVLVGRLRRKLEACGGFKPIDTVRGQGY 218 >gi|304438293|ref|ZP_07398234.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368659|gb|EFM22343.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 228 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 102/199 (51%), Gaps = 9/199 (4%) Query: 26 LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85 +EG + +E +Q + D+ ++ L G +E+ R +R S VP+I ++ +++ Sbjct: 33 IEGNGTRAYERIIQENF--DIILLDVML--PGMDGIEICRRVRTVSNVPIIMLTARDAVE 88 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS----NNRAETGPIRVFSDGRDPE 141 ++ D G DD + KP E++AR+ RR +S ++R + +F + + Sbjct: 89 DRVEGLDIGADDYITKPFAVPELIARIRNALRRRDISTDDASDRLTVKNLIMFLSRYEVQ 148 Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 V GE L +RE +LEYL+ N+ + + QI ++G FD E NVV+ +I LR KL Sbjct: 149 VDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVWG-FDYTGETNVVDVYIRYLRAKL 207 Query: 202 RNKLGFDPVDSKRFLGYSI 220 ++ + + R +GY + Sbjct: 208 DDRFHKKYIYTVRGVGYVV 226 >gi|118619653|ref|YP_907985.1| two component sensory transduction protein RegX3 [Mycobacterium ulcerans Agy99] gi|183980840|ref|YP_001849131.1| two-component sensory transduction protein RegX3 [Mycobacterium marinum M] gi|118571763|gb|ABL06514.1| two component sensory transduction protein RegX3 [Mycobacterium ulcerans Agy99] gi|183174166|gb|ACC39276.1| two-component sensory transduction protein RegX3 [Mycobacterium marinum M] Length = 227 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 18/208 (8%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + + + A D S + L+ G ++ + +RA S VP+I ++ S Sbjct: 24 EGFEATVVTDGPAALAEFDRSGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138 + + G DD V KP RE++AR+ A+ RR +VS+ E+GP+R+ + Sbjct: 84 EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEVSDGVLESGPVRMDVERH 143 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 V G+ LP +E +LEYLM N G+ + + Q+ ++G D + ++ H+ Sbjct: 144 VVSVNGDAITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 198 Query: 199 KKLRNKLGFDPVD-----SKRFLGYSID 221 K+LR+K+ DP + + R LGY ++ Sbjct: 199 KRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|46203467|ref|ZP_00208981.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 220 Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 72/132 (54%), Gaps = 2/132 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP E++AR A+ RRL+V G + + R ++G P+ Sbjct: 88 LDAGADDYVPKPFEPVELVARARAVIRRLQVDRKGVLRIGNLSFDTAARSVSIEGHPIPI 147 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 PRRE +LE L+ G+ + + +A YG FD+ ++ N +++HIS+LRK+LR Sbjct: 148 PRRELALLEALIRRAGQVTMRETLEAAAYG-FDDEIQSNAIDAHISRLRKRLRAADCSVA 206 Query: 210 VDSKRFLGYSID 221 + R LGY ++ Sbjct: 207 IKPLRGLGYVLE 218 >gi|148271879|ref|YP_001221440.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829809|emb|CAN00728.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 222 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 3/165 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G ++L IR S +I ++ +++ L F GVDD + KP E++ARV A+ Sbjct: 60 GPSGIQLAERIRRWSDASVIMLTARDAVEDRLRGFGQGVDDYIVKPFALAELVARVGAVL 119 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR + E G + V D GE L E ++L YL A+RG+ ++KTQ+ + Sbjct: 120 RRRGRLASVVEIGDLLVDPDSGLARRGGEQLELTSIEFQLLAYLAAHRGRTLSKTQLLTQ 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G +D+ + N+VE HIS LRKK+ + G + + R LGY ++ Sbjct: 180 VWG-YDQT-DPNLVEVHISALRKKMEAR-GPRLLHTVRGLGYRVE 221 >gi|28211158|ref|NP_782102.1| transcriptional activator protein [Clostridium tetani E88] gi|28203598|gb|AAO36039.1| transcriptional activator protein [Clostridium tetani E88] Length = 222 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 89/159 (55%), Gaps = 7/159 (4%) Query: 67 IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 IR H++ V +I ++ ++ + D G +D + KP H E+ AR+ ++ RR V + Sbjct: 66 IREHNKTVNIIMLTAKSDVEDRVLGLDLGANDYMIKPFHFEELEARIRSLLRRKTVQQDA 125 Query: 126 A-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 GPI+ ++ R ++ E F L ++E ILEYL+ N+ + V++ +I ++G ++ Sbjct: 126 VIVCGPIKFDTNSRTVQIHDENFKLTKKETTILEYLILNKSRIVSQEEILDHVWG---DS 182 Query: 185 VE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V+ N V H+S LR+KL++K G + + + GY ID Sbjct: 183 VDFLSNTVRVHMSTLRRKLKDKAGCNIIKNVIGEGYIID 221 >gi|229591797|ref|YP_002873916.1| two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229363663|emb|CAY51014.1| two-component system response regulator [Pseudomonas fluorescens SBW25] Length = 226 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 10/223 (4%) Query: 1 MFVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59 M VL+ +D L+ G +A G ++E + + +A D+ ++ L E Sbjct: 1 MHVLVCEDDELIASGIVAGLTAQGFTVERVATAGAARAMLKAATFDIMVLDLGL--PDED 58 Query: 60 VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L+L + R+ ++P++ ++ S+ +D +G DD + KP RE+ AR+ + RR Sbjct: 59 GLKLLQQQRSQGLEIPVLILTARDSVTNRVDGLQAGADDYLLKPFDLRELAARLQTLLRR 118 Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + S N E G + R+ + G+ L RRE+ +L+ L+ N+G+ ++ Q+ ++ Sbjct: 119 VAGRSVNLIEHGRLAYNPSSRETFLGGQPVDLSRREQALLQALLHNKGRVLSSEQLKDSV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 YG DE +E N + HI LR+KL N + V++ R LGY + Sbjct: 179 YGFNDE-LESNALNVHIHHLRRKLGNGI----VETVRGLGYRL 216 >gi|159185897|ref|NP_356842.2| two component response regulator [Agrobacterium tumefaciens str. C58] gi|159141031|gb|AAK89627.2| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 224 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 2/146 (1%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIR 132 P+I ++ L ++ + G DD + KP E+LAR+ A+ RR A G + Sbjct: 74 PVIVLTAQGGLADRINGLNLGADDYLAKPFAVEELLARIRALMRRPAGTVKMTARLGALE 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + R+ ++GE PL RRE ILE L+ +G+ V ++ + A+Y FD+ ++ N ++S Sbjct: 134 FCFETREVRIKGEFLPLTRRELLILEALLRRQGRTVLRSMLEEAVYN-FDDEIQSNALDS 192 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218 HIS+LR+KL V R +GY Sbjct: 193 HISRLRRKLAAADAGVEVHGIRGVGY 218 >gi|332307268|ref|YP_004435119.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174597|gb|AEE23851.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 226 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 80/149 (53%), Gaps = 2/149 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131 P++ ++ Q ++ D+G DD + KP + E+LARV A+ RR +N E GPI Sbjct: 73 CPILILTARDRWQEKVEGLDAGADDYLTKPFQNEELLARVKALIRRSAGQANPTIELGPI 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + V G+ L E ++ EYL+ N K V+KT++ IY D ++ NV+E Sbjct: 133 SLNTLSEQVSVSGQDIELTAYEYKVFEYLLLNPKKVVSKTELTEHIYDQ-DFDLDSNVIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +LRKKL + +P+++ R GY I Sbjct: 192 VFVGRLRKKLDPEGKINPIETMRGRGYRI 220 >gi|254253937|ref|ZP_04947254.1| hypothetical protein BDAG_03222 [Burkholderia dolosa AUO158] gi|124898582|gb|EAY70425.1| hypothetical protein BDAG_03222 [Burkholderia dolosa AUO158] Length = 224 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 60 LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++R E GP+ S R + GE PL RER +LE L+ G+ + K + I+ Sbjct: 120 LGHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LR+KL N G V + R LGY ++ Sbjct: 180 GL-DESVNADAIEIYVYRLRRKLENT-GVSIV-TLRGLGYLLE 219 >gi|126651117|ref|ZP_01723327.1| transcription response regulator-like protein [Bacillus sp. B14905] gi|126591955|gb|EAZ86021.1| transcription response regulator-like protein [Bacillus sp. B14905] Length = 220 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 7/162 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +++R S +P+I ++ Q + FD G+DD + KP ++ RV A+ RR Sbjct: 63 EVAKMLRNQSNIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSNH 122 Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N N + V DG V E PL +E IL+ L+ N K + + I ++G Sbjct: 123 KNWGNHLNFNELNVDCDGYKAYVNKEEIPLTTKEFEILQLLLHNEKKVLTREIIVEKVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + E ++++HI LRK KL + + + +GY ID Sbjct: 183 -YDYSGETRMIDTHIKNLRK----KLNLPYIKTVKGIGYKID 219 >gi|23012185|ref|ZP_00052333.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 225 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 8/170 (4%) Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 K + V L RA + P+I ++ +D FD+G DD V KP H E++ARV AI Sbjct: 56 KADGVTVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAI 115 Query: 116 YRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR ++++ GP+ + + V G L E R+L YLM + G+ V++ ++ Sbjct: 116 LRRAAGHASSQIACGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELT 175 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +Y FD + N +E + +LRK KL D + + R LGY ID N Sbjct: 176 EHLYDQDFDR--DSNTIEVFVGRLRK----KLAVDLIQTVRGLGYLIDPN 219 >gi|126735860|ref|ZP_01751605.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] gi|126715047|gb|EBA11913.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] Length = 220 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 112/224 (50%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLI-GKGEK 59 F+L++D + D +A DG +++ +L E +EWL + A D+ ++ L G G + Sbjct: 3 FLLVEDNNELGDAVVARLSLDGHAVDHAKTLAEADEWL-AVADYDLMLLDVMLPDGDGRE 61 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R ++P+I ++ + +D D G DD + KP E+ AR A+ RR Sbjct: 62 FL---RKTRTTERMPVIVLTARSQVSDRVDTLDLGADDYITKPFDFGELEARCRAVLRRR 118 Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G G GE PL RE R+LE N+G+ ++K+Q+ ++ Sbjct: 119 GTPTPALIPLGDALFDPSGGTLSHDGETKPLRNRELRLLEVFARNKGQILSKSQLLDRLF 178 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D V EN +E ++++LRK+L G + +++ R +GY ++W Sbjct: 179 SQ-DAEVSENAIEVYVARLRKRL-FAAGVE-IETVRGVGYRMNW 219 >gi|109899149|ref|YP_662404.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109701430|gb|ABG41350.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] Length = 226 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 14/209 (6%) Query: 14 GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIRAHSQ 72 GY DDG +L S D++ I+ L + G +V++ R + + Sbjct: 24 GYSVDLADDGAK---------ALFLLSEHPYDLAIIDIGLPVMDGFEVIQKAR--KNNVS 72 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131 P++ ++ Q ++ D+G DD + KP + E+LARV A+ RR +N E GPI Sbjct: 73 CPILILTARDRWQEKVEGLDAGADDYLTKPFQNEELLARVKALIRRSAGQANPTIELGPI 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + V G L E ++ EYL+ N K V+KT++ IY D ++ NV+E Sbjct: 133 SLNTLSEQVSVSGTDIELTAYEYKVFEYLLLNPKKVVSKTELTEHIYDQ-DFDLDSNVIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +LRKKL + +P+++ R GY I Sbjct: 192 VFVGRLRKKLDPQGSINPIETMRGRGYRI 220 >gi|330811228|ref|YP_004355690.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379336|gb|AEA70686.1| Putative response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 225 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 108/219 (49%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ D G ++ + E + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLQTRLTDSGHVVQAVANAEEALYQVREFNHDLAVIDLGL--PGISGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R +R+ + P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR Sbjct: 61 ELIRRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+ + + + + E L E RILEYLM + + VAK ++ +Y Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLGEEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL GF P+D+ R LGY Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLEAPAGFKPIDTVRGLGY 218 >gi|325275490|ref|ZP_08141410.1| winged helix family two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324099375|gb|EGB97301.1| winged helix family two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 227 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 112/221 (50%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D L+ G A G++++ + + +A+ DV ++ L E L Sbjct: 3 VLLCEDDDLIAAGICAGLTAQGLTVDRVGNAAAARAMLQAAQFDVMVLDLGL--PDEDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R + +P++ ++ ++ +D +G DD + KP RE+ AR+ + RR+ Sbjct: 61 KLLRRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N E GP+R + + G+ L RRE+ +L+ L+ N G+ ++ Q+ +YG Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQQVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE VE N + HI LR+KL N + V++ R LGY + Sbjct: 181 FSDE-VESNALNVHIHHLRRKLGNGI----VETVRGLGYRL 216 >gi|291536536|emb|CBL09648.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] gi|291538595|emb|CBL11706.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 215 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 91/161 (56%), Gaps = 6/161 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + + + + ++ +S + ++ D+G +D + KP H +E+ AR+ ++ RR V Sbjct: 52 LKELRQRNEETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKFVQ 111 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E+G I+ + R+ +G++ L R+E ILEYL+ N G+ V++ ++ ++ Sbjct: 112 KDVCLESGGIKFDTVRREAYAKGKMISLTRKENGILEYLLLNPGRPVSQEELMEHVW--- 168 Query: 182 DEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +V+ + H+S LRKKL+ +LG+DP+ +K GY I Sbjct: 169 DASVDSFSGAIRVHMSSLRKKLKAELGYDPILNKVGEGYKI 209 >gi|260433792|ref|ZP_05787763.1| cell cycle transcriptional regulator CtrA [Silicibacter lacuscaerulensis ITI-1157] gi|260417620|gb|EEX10879.1| cell cycle transcriptional regulator CtrA [Silicibacter lacuscaerulensis ITI-1157] Length = 238 Score = 78.6 bits (192), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 4/151 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL RI R + P++ +S ++ + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRIARV--ETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + TG I V D + EV G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSIIRTGRIAVNLDAKTVEVDGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 +YG DE E +++ I KLRKKL N G Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSNATG 206 >gi|170751369|ref|YP_001757629.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170657891|gb|ACB26946.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 225 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 8/170 (4%) Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 K + V L + RA + P+I ++ +D FD+G DD V KP H E++ARV A+ Sbjct: 56 KADGVTVLQKWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAL 115 Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + ++ GP+ + + V G L E R+L YLM + G+ V++ ++ Sbjct: 116 LRRAAGHATSQIACGPVTLDTRSGKVFVDGAQVKLTSHEYRLLSYLMHHTGRVVSRAELT 175 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +Y FD + N +E + +LRK KL D + + R LGY +D N Sbjct: 176 EHLYDQDFDR--DSNTIEVFVGRLRK----KLAVDLIQTVRGLGYLVDPN 219 >gi|188580664|ref|YP_001924109.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179344162|gb|ACB79574.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 225 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 8/170 (4%) Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 K + V L RA + P+I ++ +D FD+G DD V KP H E++ARV AI Sbjct: 56 KADGVTVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAI 115 Query: 116 YRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR ++++ GP+ + + V G L E R+L YLM + G+ V++ ++ Sbjct: 116 LRRAAGHASSQISCGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELT 175 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +Y FD + N +E + +LRK KL D + + R LGY ID N Sbjct: 176 EHLYDQDFDR--DSNTIEVFVGRLRK----KLAVDLIQTVRGLGYLIDPN 219 >gi|297572194|ref|YP_003697968.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] gi|296932541|gb|ADH93349.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] Length = 229 Score = 78.6 bits (192), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 69/222 (31%), Positives = 103/222 (46%), Gaps = 30/222 (13%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIR 68 L +DGY L +GV + L + DV ++ L GE V R IR Sbjct: 22 LNRDGYDVLTASNGV-----------QALDVYKKADVILLDLMLPEMSGEDVC---RKIR 67 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 HS VP+I ++ S + + G DD V KP +RE++AR+ AI RR E Sbjct: 68 QHSSVPIIMVTAKESEIDKVVGLEIGADDYVTKPYSYRELVARIRAILRRTGAEPATEEP 127 Query: 129 GPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 PI + DP V + +P RE +LEYLM N G+ V + QI I+G+ Sbjct: 128 QPITIGRVTIDPVAHVVYVDHQPISMPLREYELLEYLMENAGRVVTRGQILDRIWGI-GY 186 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSI 220 + ++ H+ K++R+K+ DPV+ + R +GY I Sbjct: 187 VGDSKTLDVHV----KRIRSKIEKDPVNPSLLVTVRGVGYKI 224 >gi|302336530|ref|YP_003801737.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301320370|gb|ADK68857.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 229 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 7/162 (4%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LEL R +RA HS+ ++ +S ++ + D+G DD + KP E+ ARV + RR Sbjct: 60 LELLRTLRAQHSETKVLILSARSAVSDRIVGLDAGADDYLVKPFAFGELEARVRNLLRRE 119 Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G +R + R +G L ++E ILEYLM ++G+ V+ ++ S + Sbjct: 120 YTQGETFLDCGDLRFDTTTRRLSAKGVEISLTKKETAILEYLMRHKGRVVSSEELLSHAW 179 Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +V+ N V HI LRKKLR+ LG DP+ +K GY Sbjct: 180 ---DSSVDPFSNSVRVHICSLRKKLRSVLGCDPISNKIGEGY 218 >gi|153811670|ref|ZP_01964338.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174] gi|149832411|gb|EDM87496.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174] Length = 225 Score = 78.2 bits (191), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 10/204 (4%) Query: 22 DGVSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIG 77 +G+ ++G+ + L+ +E L+ E+ I L G L++ R R +S P++ Sbjct: 18 EGLRMDGYETDTCLDGDEGLELCTTENYDLILLDLNLPGIDGLDILRQFRETNSSTPVLI 77 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSD 136 +S ++ ++ D G +D + KP H E+ AR+ ++ RR + N + G I + Sbjct: 78 LSARGQIEDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRRFIQENVCLKCGHISFDTR 137 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESHI 194 R + E L R+E +LEY M ++ + ++ ++ I+ D +V N + HI Sbjct: 138 TRKAHIDSEELSLTRKESALLEYFMLHQNRIISPEELIEHIW---DGSVNSFSNSIRVHI 194 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGY 218 S LRKKLR LG DP+ +K GY Sbjct: 195 SSLRKKLRAALGNDPIQNKVGQGY 218 >gi|254560526|ref|YP_003067621.1| phoP: DNA-binding response regulator in two-component regulatory system with PhoQ [Methylobacterium extorquens DM4] gi|254267804|emb|CAX23651.1| putative phoP: DNA-binding response regulator in two-component regulatory system with PhoQ [Methylobacterium extorquens DM4] Length = 225 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 8/170 (4%) Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 K + V L RA + P+I ++ +D FD+G DD V KP H E++ARV AI Sbjct: 56 KADGVTVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAI 115 Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR ++++ GP+ + + V G L E R+L YLM + G+ V++ ++ Sbjct: 116 LRRAAGHASSQIACGPVTLDTRSGRVFVDGTPIKLTSHEYRLLSYLMHHTGRVVSRAELT 175 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +Y FD + N +E + +LRK KL D + + R LGY ID N Sbjct: 176 EHLYDQDFDR--DSNTIEVFVGRLRK----KLAVDLIQTVRGLGYLIDPN 219 >gi|104782688|ref|YP_609186.1| DNA-binding response regulator [Pseudomonas entomophila L48] gi|95111675|emb|CAK16396.1| putative DNA-binding response regulator [Pseudomonas entomophila L48] Length = 227 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 109/221 (49%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D L+ G A G++++ S + +A+ DV ++ L E L Sbjct: 3 VLLCEDDDLIASGICAGLSAQGLTVDRVASASQARQMLQAAQFDVMILDLGL--PDEDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R + +P++ ++ ++ +D +G DD + KP RE+ AR+ + RR+ Sbjct: 61 KLLRRLRQQGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N E GP+ + G L RRE+ +L+ L+ N G+ ++ Q+ +YG Sbjct: 121 GRAVNVIEHGPLCYDPSSCVATLAGAPVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE VE N + HI LR+KL N + V++ R LGY + Sbjct: 181 FSDE-VESNALNVHIHHLRRKLGNGI----VETVRGLGYRL 216 >gi|163850840|ref|YP_001638883.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218529660|ref|YP_002420476.1| transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240137967|ref|YP_002962439.1| putative phoP: DNA-binding response regulator in two-component regulatory system with PhoQ [Methylobacterium extorquens AM1] gi|163662445|gb|ABY29812.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218521963|gb|ACK82548.1| two component transcriptional regulator, winged helix family [Methylobacterium chloromethanicum CM4] gi|240007936|gb|ACS39162.1| putative phoP: DNA-binding response regulator in two-component regulatory system with PhoQ [Methylobacterium extorquens AM1] Length = 225 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 8/170 (4%) Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 K + V L RA + P+I ++ +D FD+G DD V KP H E++ARV AI Sbjct: 56 KADGVTVLQNWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRAI 115 Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR ++++ GP+ + + V G L E R+L YLM + G+ V++ ++ Sbjct: 116 LRRAAGHASSQIACGPVTLDTRSGRVFVDGAPIKLTSHEYRLLSYLMHHTGRVVSRAELT 175 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +Y FD + N +E + +LRK KL D + + R LGY ID N Sbjct: 176 EHLYDQDFDR--DSNTIEVFVGRLRK----KLAVDLIQTVRGLGYLIDPN 219 >gi|13475293|ref|NP_106857.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14026044|dbj|BAB52643.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 223 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 58/211 (27%), Positives = 105/211 (49%), Gaps = 13/211 (6%) Query: 19 FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGI 78 GD G +++ +LE S A ++ +E ++ G+ + L ++ VP + + Sbjct: 20 LGDSGFAVDVVPTLEQASSAFSCASYEILLLE-LVLPDGDGLDWLKQLRGEGHSVPALIL 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD-- 136 SD L+ + F+ G DD + KP++ E++AR+ A+ RR + T PI VF + Sbjct: 79 SDVDDLEKRIAIFNGGADDFLLKPVYTNELIARMRAVLRR-----STQMTAPIIVFGNLH 133 Query: 137 ----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 GR V G + RRE ILE+L+ G+ V ++Q+ +Y F++ V N +E Sbjct: 134 FDPIGRQVSVAGYPLTVARRELCILEHLLNRAGRIVPRSQLEDHLYS-FNDEVSANALEV 192 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 I +LR+ L + + + R +GY ++ + Sbjct: 193 GIYRLRRYLSSSNATPRIKTVRGIGYILECD 223 >gi|313113436|ref|ZP_07799025.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624163|gb|EFQ07529.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 263 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 90/164 (54%), Gaps = 7/164 (4%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +R H + ++ +S + ++ D+G +D ++KP H E+ ARV ++ RR Sbjct: 98 MQVLRTLRRHDLETCVLILSARSEIADKVEGLDAGANDYLSKPFHLAELEARVRSLTRRK 157 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G + + R V G+ L R+E +LEYL+ ++G+ V++ ++ ++ Sbjct: 158 FIQQDVCLCCGRLSFNTRSRVAAVDGQTLALTRKESGVLEYLLLHQGRPVSQEELIEHVW 217 Query: 179 GLFDEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +V+ N + HIS LRKKLR LG+DP+ ++ GY I Sbjct: 218 ---DGSVDSFSNSIRVHISALRKKLRAALGYDPIRNRIGEGYEI 258 >gi|291548336|emb|CBL21444.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 225 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 10/204 (4%) Query: 22 DGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIG 77 +G+ ++G+ + +E L+ E+ I L G LE+ R R + + P++ Sbjct: 18 EGLRMDGYEADTCFDGDEGLELCLVENYDLILLDLNLPGVDGLEILRQFRESDTSTPVLI 77 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSD 136 +S +Q ++ D G +D + KP H E+ AR+ ++ RR + + + G I + Sbjct: 78 LSARGQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKFIQQDVCLQCGRISFDTR 137 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESHI 194 R + G L R+E +LEY + ++ + ++ ++ I+ D +V N + HI Sbjct: 138 TRKASIDGLPLSLTRKESSLLEYFLLHQNRIISPEEMIEHIW---DGSVNSLSNSIRVHI 194 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGY 218 S LRKKLR LGFDP+ +K GY Sbjct: 195 SSLRKKLRTALGFDPIQNKIGQGY 218 >gi|56696561|ref|YP_166918.1| DNA-binding response regulator CtrA [Ruegeria pomeroyi DSS-3] gi|56678298|gb|AAV94964.1| DNA-binding response regulator CtrA [Ruegeria pomeroyi DSS-3] Length = 238 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 79/151 (52%), Gaps = 4/151 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S ++ + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRMSRI--ETPILILSGVDDTESKIKGFGFGADDYLTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + TG I V D + EV+G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSVIRTGKISVNLDAKTVEVEGQPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 +YG DE E +++ I KLRKKL N G Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSNATG 206 >gi|217966935|ref|YP_002352441.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] gi|217336034|gb|ACK41827.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] Length = 224 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 92/170 (54%), Gaps = 19/170 (11%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 + L + +RA + Q P++ ++ ++ + +SG DD + KP + E+LAR+ A+ RR Sbjct: 62 ISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRRP 121 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAK 170 LKV + +T RVF +G++ L +E ILEYLM N + ++K Sbjct: 122 KNLMPTVLKVKDISLDTVSKRVF--------RGDIEILLTNKEFAILEYLMRNVNRIISK 173 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI S ++G ++ NVVE+HI LRKKL K + +++ R +GY I Sbjct: 174 EQIISHVWG-YESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGYRI 222 >gi|148546876|ref|YP_001266978.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148510934|gb|ABQ77794.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|313497928|gb|ADR59294.1| Winged helix family two component transcriptional regulator [Pseudomonas putida BIRD-1] Length = 227 Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 112/221 (50%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D L+ G A G++++ + + +A+ DV ++ L E L Sbjct: 3 VLLCEDDDLIAAGICAGLTAQGLTVDRVGNAAAARAMLQAAQFDVMILDLGL--PDEDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R + +P++ ++ ++ +D +G DD + KP RE+ AR+ + RR+ Sbjct: 61 KLLRRLREKGETLPVLVLTARDAVTDRVDGLQAGADDYLLKPFDLRELAARLHTLLRRVA 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N E GP+R + + G+ L RRE+ +L+ L+ N G+ ++ Q+ +YG Sbjct: 121 GRAVNVIEHGPLRYDPSSCEATLAGQHVDLSRREQALLQALLQNPGRVLSSEQLKDCVYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE VE N + HI LR+KL N + V++ R LGY + Sbjct: 181 FSDE-VESNALNVHIHHLRRKLGNGI----VETVRGLGYRL 216 >gi|118588829|ref|ZP_01546237.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Stappia aggregata IAM 12614] gi|118438815|gb|EAV45448.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Stappia aggregata IAM 12614] Length = 218 Score = 77.8 bits (190), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 6/157 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + R +QVP+I ++ + ++ DSG DD + KP E+ AR++A+ RR + Sbjct: 63 LKTLRRGGNQVPVIIVTAQDQVAMRIEGLDSGADDYLVKPFDLAELRARLSAVARRYAGA 122 Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N T G I + + E G+ L RE +LE L+ +RG V+K+ I ++Y F Sbjct: 123 PNPETTLGDITLDLTRKSAERAGKPVDLTSREWAVLERLLRHRGGIVSKSDIEESLYA-F 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VE N VE ++S+LRK K+G D V + R LGY Sbjct: 182 GAEVESNTVEVYVSRLRK----KIGADAVTTVRGLGY 214 >gi|218134956|ref|ZP_03463760.1| hypothetical protein BACPEC_02861 [Bacteroides pectinophilus ATCC 43243] gi|217990341|gb|EEC56352.1| hypothetical protein BACPEC_02861 [Bacteroides pectinophilus ATCC 43243] Length = 239 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 90/162 (55%), Gaps = 3/162 (1%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +EL + +R ++ + ++ +S + ++ D+G +D + KP H +E+ AR+ ++ RR Sbjct: 73 MELLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRK 132 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V N+ + G I+ + R + E L R+E ILEYL+ N G+ V++ ++ ++ Sbjct: 133 FVQNDICLKCGEIKFDTIKRKAYAKEEPVLLTRKENGILEYLLINIGRPVSQEELIEHVW 192 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + H+S LRKKL+ KLG+DP+ +K GY I Sbjct: 193 DATADSFS-GAIRVHMSSLRKKLKAKLGYDPIQNKVGEGYKI 233 >gi|323528206|ref|YP_004230358.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385208|gb|ADX57298.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 224 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 4/157 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ R VP+I ++ + S +D F +G DD V KP RE++AR+ A+ RR Sbjct: 63 LARLRRRGDNVPVIMLTAHGSTDDKVDCFSTGADDYVVKPFDARELVARIKALIRRQSGG 122 Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + T G ++ SD R+ L RRE +LE LM +GK V+K + +++ L Sbjct: 123 MSSCLTCGDLQYLSDTREFFHNDARLALRRREHTVLETLMLRKGKTVSKAVLMESVFSLD 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + ++ +I +LRK L N + + R LGY Sbjct: 183 DEP-SADAIDIYIHRLRKHLSNSSA--QITTLRGLGY 216 >gi|41410081|ref|NP_962917.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466224|ref|YP_883789.1| DNA-binding response regulator [Mycobacterium avium 104] gi|254777097|ref|ZP_05218613.1| DNA-binding response regulator [Mycobacterium avium subsp. avium ATCC 25291] gi|41398914|gb|AAS06533.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167511|gb|ABK68408.1| DNA-binding response regulator [Mycobacterium avium 104] Length = 227 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 18/208 (8%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + + + A D + + L+ G ++ + +RA S VP+I ++ S Sbjct: 24 EGFEATVVTDGSAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138 + + G DD V KP RE++AR+ A+ RR ++S+ E+GP+R+ + Sbjct: 84 EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEISDGVLESGPVRMDVERH 143 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 V G+ LP +E +LEYLM N G+ + + Q+ ++G D + ++ H+ Sbjct: 144 VVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 198 Query: 199 KKLRNKLGFDPVD-----SKRFLGYSID 221 K+LR+K+ DP + + R LGY ++ Sbjct: 199 KRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|310829976|ref|YP_003962333.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308741710|gb|ADO39370.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 228 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 105/209 (50%), Gaps = 13/209 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGK-GE 58 + V+ DDR + + ++G + EG F +E L+S D+ ++ L K G+ Sbjct: 6 ILVVEDDRE-INSMLCEMLDENGYAAEGAFTGMEGLSRLRSGDY-DLLILDLMLPYKSGD 63 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 VL+ +R+ S +P+I IS ++Q LD F G DD + KP E+L RV A+ RR Sbjct: 64 AVLQ---ELRSFSSLPVIVISAKDTVQNKLDLFHMGADDYLTKPFDLDEVLVRVEAVLRR 120 Query: 119 LKVSN-NRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S RA + G + V ++ + V G+ L +E ILE LM K +K + Sbjct: 121 CGSSEAQRAPEILQAGKLAVDTESKTASVDGQELVLTAKEYGILELLMRYPHKVFSKANL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR 202 F +I+ + A E+N + H+S LR KL+ Sbjct: 181 FESIWN-EEYACEDNTLNVHMSNLRNKLK 208 >gi|254821074|ref|ZP_05226075.1| DNA-binding response regulator [Mycobacterium intracellulare ATCC 13950] Length = 227 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 18/208 (8%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + + + A D + + L+ G ++ + +RA S VP+I ++ S Sbjct: 24 EGFEATVVTDGSAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138 + + G DD V KP RE++AR+ A+ RR ++S+ E+GP+R+ + Sbjct: 84 EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGEDDSEISDGVLESGPVRMDVERH 143 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 V G+ LP +E +LEYLM N G+ + + Q+ ++G D + ++ H+ Sbjct: 144 VVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 198 Query: 199 KKLRNKLGFDPVD-----SKRFLGYSID 221 K+LR+K+ DP + + R LGY ++ Sbjct: 199 KRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|170782486|ref|YP_001710819.1| putative two component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157055|emb|CAQ02228.1| putative two component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 236 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 88/165 (53%), Gaps = 3/165 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G ++L IR S +I ++ +++ L F GVDD + KP E++ARV A+ Sbjct: 74 GPSGIQLAERIRRWSDAGVIMLTARDAVEDRLRGFGHGVDDYIVKPFALAELVARVGAVL 133 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR + E G + V D GE L E ++L YL A+RG+ ++KTQ+ + Sbjct: 134 RRRGRLASVVEIGDLLVDPDAGLARRGGEPLELTSIEFQLLAYLAAHRGRTLSKTQLLTQ 193 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G +D A + N+VE HIS LRKK+ G + + R LGY ++ Sbjct: 194 VWG-YDHA-DPNLVEVHISALRKKMEAH-GPRLLHTVRGLGYRVE 235 >gi|229592122|ref|YP_002874241.1| two-component system transcriptional regulatory protein PhoP [Pseudomonas fluorescens SBW25] gi|229363988|emb|CAY51531.1| two-component system, transcriptional regulatory protein PhoP, regulator of virulence determinants [Pseudomonas fluorescens SBW25] Length = 225 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 110/219 (50%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + D G +E + E + D++ I+ L G G L Sbjct: 3 LLVVEDEALLRHHLLTRLTDSGHVVEAVANAEEALYQTGQFNHDLAIIDLGLPGMGG--L 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R ++ P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR Sbjct: 61 DLIRQLRTQAKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARMNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+ + + + + + L E RILEYLM + + VAK ++ +Y Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLDEQPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL GF P+D+ R LGY Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLEGPGGFKPIDTVRGLGY 218 >gi|240144071|ref|ZP_04742672.1| transcriptional regulatory protein CutR [Roseburia intestinalis L1-82] gi|257203944|gb|EEV02229.1| transcriptional regulatory protein CutR [Roseburia intestinalis L1-82] Length = 153 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 79/133 (59%), Gaps = 6/133 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149 D+G +D + KP H +E+ AR+ ++ RR V + E+G I+ + R+ +G++ L Sbjct: 18 LDAGANDYMEKPFHLQELEARIRSLTRRKFVQKDVCLESGGIKFDTVRREAYAKGKMISL 77 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRNKLGF 207 R+E ILEYL+ N G+ V++ ++ ++ D +V+ + H+S LRKKL+ +LG+ Sbjct: 78 TRKENGILEYLLLNPGRPVSQEELMEHVW---DASVDSFSGAIRVHMSSLRKKLKAELGY 134 Query: 208 DPVDSKRFLGYSI 220 DP+ +K GY I Sbjct: 135 DPILNKVGEGYKI 147 >gi|296168092|ref|ZP_06850158.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896899|gb|EFG76527.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 227 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 15/165 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKV 121 +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR ++ Sbjct: 67 LRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEI 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S+ E+GP+R+ + V G+ LP +E +LEYLM N G+ + + Q+ ++G Sbjct: 127 SDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-A 185 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221 D + ++ H+ K+LR+K+ DP + + R LGY ++ Sbjct: 186 DYVGDTKTLDVHV----KRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|300857169|ref|YP_003782153.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300437284|gb|ADK17051.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 102/196 (52%), Gaps = 17/196 (8%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+GY G+ +LE F+S+EF + D+ +GE E+ +IIR Sbjct: 21 LEKEGYEVYTSTTGLKALELFDSIEFSLIILDLMLPDI---------QGE---EICKIIR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126 S V + ++ +L+ ++ ++G D+ + KP RE++ARV +++RRL +N Sbjct: 69 DKSDVHIFMVTAKSALEDRIEGLNTGADEYLVKPFSPRELVARVNSLFRRLGANNISVLS 128 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G I+++ D R +V+G+ L E IL L N+GK + + Q+ ++G+ E Sbjct: 129 LDNGNIQIYKDSRIIKVKGQEISLTPNEFDILYVLAINKGKVLTREQLIDRVFGMDFEGF 188 Query: 186 EENVVESHISKLRKKL 201 + V+ HI +RKK+ Sbjct: 189 DR-TVDVHIKNIRKKI 203 >gi|317507256|ref|ZP_07965002.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316254450|gb|EFV13774.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 228 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 108/223 (48%), Gaps = 27/223 (12%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ + DG + E+ ++ A D+ ++ L G G ++ + +RA Sbjct: 21 LRKEGFETVIAGDGPT-------ALTEFDRTGA--DIVLLDLMLPGMGGN--DVCKQLRA 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--- 126 S VP+I ++ S + + G DD V KP RE+ AR+ A+ RR + + + Sbjct: 70 RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLRRGQEAESETSLD 129 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E GPI++ D V G+ LP +E +LEYLM NRG+ + + Q+ ++G D Sbjct: 130 GALEAGPIKLDVDRHLVSVHGKQVTLPLKEFDLLEYLMRNRGRVLTRGQLIDRVWG-ADY 188 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221 + ++ H+ +LR K+ + DP +R LGY ++ Sbjct: 189 VGDTKTLDVHVKRLRSKIED----DPAKPERLVTVRGLGYKLE 227 >gi|170017835|ref|YP_001728754.1| response regulator [Leuconostoc citreum KM20] gi|169804692|gb|ACA83310.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Leuconostoc citreum KM20] Length = 229 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 13/223 (5%) Query: 2 FVLIDDRALVKD---GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 +LI+D A + D G++ F D V G + E+E Q S + I L+ GE Sbjct: 7 ILLIEDDANLADNIVGFLQDFADVNVVTNGLDG-EYEG--QESPYD---LIICDLMLPGE 60 Query: 59 KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ + +R + + P++ ++ SL ++ F+ G DD + KP + E+L RV A+ R Sbjct: 61 NGLEVIKHLRDNDIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLVRVKALLR 120 Query: 118 RLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R V +N G + + + R +V G+ L +E IL YL N+ V + QIF Sbjct: 121 RAGVYSEDNMITVGDVLINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVTRDQIFD 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G+ D NVV +++ LR+KL D + + R +G+ Sbjct: 181 RVWGI-DSDTTINVVNIYLNNLRRKLEAVGQNDLIKTLRNIGF 222 >gi|229032673|ref|ZP_04188636.1| Two-component response regulator vanRB [Bacillus cereus AH1271] gi|228728672|gb|EEL79685.1| Two-component response regulator vanRB [Bacillus cereus AH1271] Length = 247 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 13/165 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV A+ RR + Sbjct: 89 ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRR--AA 146 Query: 123 NNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 AET I F S V G L +E I+ L+ NRGK ++++ + + Sbjct: 147 TKEAETATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNK 206 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G ++ + V+++HI LRK KLG + + + +GY I+ Sbjct: 207 VWG-YEHYGDVRVIDTHIKNLRK----KLGIPYIKTVKGIGYKIE 246 >gi|126737637|ref|ZP_01753367.1| DNA-binding response regulator CtrA [Roseobacter sp. SK209-2-6] gi|126721030|gb|EBA17734.1| DNA-binding response regulator CtrA [Roseobacter sp. SK209-2-6] Length = 239 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 4/153 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRMARI--ETPILILSGADDTDNKIKGFGFGADDYLTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + TG I V D + EV+G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSIINTGKIAVNLDAKTVEVEGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 +YG DE E +++ I KLRKKL G D Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSTATGGD 208 >gi|170720384|ref|YP_001748072.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169758387|gb|ACA71703.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 225 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ G+ G ++ E + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLYTRLGESGHVVQAVADAEEALYQAEQFHFDLAVIDLGL--PGMSGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL +R ++ P++ ++ + Q ++ +G DD + KP E+ AR+ A+ RR Sbjct: 61 ELIGRLRTQAKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+ + + + + + L E RILEYLM + + VAK ++ +Y Sbjct: 121 GFTQSTIAAGPLVLDLNRKQATLDEQPLALTAYEYRILEYLMRHHQQVVAKERLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL GF P+D+ R LGY Sbjct: 181 -GDEERDPNVIEVLVGRLRRKLEGARGFKPIDTVRGLGY 218 >gi|291542560|emb|CBL15670.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] Length = 225 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 74/134 (55%), Gaps = 6/134 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149 D+G +D + KP H E+ AR+ ++ RR NN G + + R G+ L Sbjct: 91 LDAGANDYLTKPFHLEELEARIRSLTRRRFTQNNVVLNCGKVAFDTKARVAVADGQELSL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESHISKLRKKLRNKLGF 207 R+E ILEYL+ N+G+ V++ ++ ++ D +V+ N + HIS LRKKLR LG+ Sbjct: 151 TRKEIGILEYLLLNQGRPVSQEELLDHVW---DNSVDNFSNSIRVHISALRKKLRAALGY 207 Query: 208 DPVDSKRFLGYSID 221 DP+ ++ GY ++ Sbjct: 208 DPIRNRIGEGYVME 221 >gi|256822630|ref|YP_003146593.1| winged helix family two component transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796169|gb|ACV26825.1| two component transcriptional regulator, winged helix family [Kangiella koreensis DSM 16069] Length = 224 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 2/150 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 Q P++ ++ Q +D +G DD + KP E+LAR+ A+ RR + GP Sbjct: 72 QFPVLILTARGHWQDKVDGLAAGADDYLVKPFQTEELLARINALLRRASGYAKPEIVKGP 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I + S ++ +V GEV L E ++LEYLM N K V+KT++ +Y D + NV+ Sbjct: 132 ISLNSLKQEVKVNGEVMDLTAYEYKVLEYLMLNPDKVVSKTELTEHLYAQ-DYDRDSNVL 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E + +LRKK+ P+D+ R GY + Sbjct: 191 EVFVGRLRKKIDPDGTIQPIDTLRGRGYRL 220 >gi|229164006|ref|ZP_04291943.1| Two-component response regulator vanRB [Bacillus cereus R309803] gi|228619389|gb|EEK76278.1| Two-component response regulator vanRB [Bacillus cereus R309803] Length = 216 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 13/165 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV A+ RR + Sbjct: 58 ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRR--AA 115 Query: 123 NNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 AET I F S V G L +E I+ L+ NRGK ++++ + + Sbjct: 116 TKEAETATILHFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNK 175 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G ++ + V+++HI LRK KLG + + + +GY I+ Sbjct: 176 VWG-YEHYGDVRVIDTHIKNLRK----KLGIPYIKTVKGIGYKIE 215 >gi|116251199|ref|YP_767037.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255847|emb|CAK06928.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 223 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H E+LAR+ A+ RR S++ GP+R+ + V G L Sbjct: 91 IDAGADDYVTKPFHVEEVLARIRALIRRAAGHSSSEIICGPVRLDTKSSKATVNGATLKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V++T++ +Y FD + N +E + +LRK K+G D Sbjct: 151 TSHEYRLLSYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KMGVD 204 Query: 209 PVDSKRFLGYSI 220 +++ R LGY I Sbjct: 205 LIETVRGLGYRI 216 >gi|148546459|ref|YP_001266561.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148510517|gb|ABQ77377.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|313497543|gb|ADR58909.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1] Length = 225 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 106/219 (48%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ G+ G +E E + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAEQYHFDLAIIDLGL--PGISGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL +R+ + P++ ++ + Q ++ +G DD + KP E+ AR+ A+ RR Sbjct: 61 ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + L E RILEYLM + + VAK ++ +Y Sbjct: 121 GFIQSTITAGPLVLDLNRKQATLDEHALALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL + GF P+D+ R LGY Sbjct: 181 -GDEERDPNVIEVLVGRLRRKLEGERGFKPIDTVRGLGY 218 >gi|209548520|ref|YP_002280437.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534276|gb|ACI54211.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 223 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H E+LAR+ A+ RR S++ GP+R+ + V G L Sbjct: 91 IDAGADDYVTKPFHVEEVLARIRALIRRAAGHSSSEIICGPVRLDTKSSKATVNGTTLKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V++T++ +Y FD + N +E + +LRK K+G D Sbjct: 151 TSHEYRLLAYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KMGVD 204 Query: 209 PVDSKRFLGYSI 220 +++ R LGY I Sbjct: 205 LIETVRGLGYRI 216 >gi|149201723|ref|ZP_01878697.1| two-component response regulator [Roseovarius sp. TM1035] gi|149144771|gb|EDM32800.1| two-component response regulator [Roseovarius sp. TM1035] Length = 224 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 87/163 (53%), Gaps = 2/163 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE + LP + + + +I +S + + D G DD + KP E+LAR+ A++ Sbjct: 57 GEGLSLLPSLRADNPGIHVIVLSARNGVNDRVAGLDGGADDYLTKPFSIDEMLARIRAVF 116 Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K+++ G + + EV G LPRRE R+L L+ RG+ V + + + Sbjct: 117 RRPAKLAHATIRAGSLVFDLAYEEVEVDGARIDLPRRELRVLAALIKRRGRTVQREALEN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 A++G FD+ ++ N ++SHIS+LR++L + + R +GY Sbjct: 177 AVFG-FDDEIQSNTLDSHISRLRRRLTTAGARIEIHAIRGVGY 218 >gi|929822|emb|CAA62008.1| FeuP [Rhizobium leguminosarum] Length = 223 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H E+LAR+ A+ RR S++ GP+R+ + V G L Sbjct: 91 IDAGADDYVTKPFHVEEVLARIRALIRRAAGHSSSEIICGPVRLDTKSSKATVNGTTLKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V++T++ +Y FD + N +E + +LRK K+G D Sbjct: 151 TSHEYRLLAYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KMGVD 204 Query: 209 PVDSKRFLGYSI 220 +++ R LGY I Sbjct: 205 LIETVRGLGYRI 216 >gi|222148018|ref|YP_002548975.1| two component response regulator [Agrobacterium vitis S4] gi|221735006|gb|ACM35969.1| two component response regulator [Agrobacterium vitis S4] Length = 224 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H E+LAR+ A+ RR +++ GP+R+ + V G+ L Sbjct: 91 IDAGADDYVTKPFHVEEVLARIRALIRRAAGHASSEIACGPVRLDTKSSKVTVSGKALKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V++T++ +Y FD + N +E + +LRK K+G D Sbjct: 151 TSHEFRLLSYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KIGLD 204 Query: 209 PVDSKRFLGYSI 220 +++ R LGY I Sbjct: 205 MIETVRGLGYRI 216 >gi|190573625|ref|YP_001971470.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011547|emb|CAQ45166.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 223 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 89/165 (53%), Gaps = 4/165 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G + + R +R + + +I ++ +L ++ D G DD + KP+ E++AR+ A Sbjct: 57 GDGAGFVAVARALRPN--LAVIMLTAKGTLSDKVEGLDVGADDYLVKPVAIEELMARIRA 114 Query: 115 IYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR + R G + + +V G++ LPRR+ +L+ L +G+ V ++ + Sbjct: 115 VSRRPSAMVTPRLRLGRLEFDFESLQAQVDGQLLALPRRQVLVLQALAMRQGRTVTRSAL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +A+YG FD+ ++ N +++HISKLRK L+ + R +GY Sbjct: 175 EAAVYG-FDDEIQSNALDAHISKLRKALQQAGAGVEIHVIRGVGY 218 >gi|325293887|ref|YP_004279751.1| two component response regulator [Agrobacterium sp. H13-3] gi|325061740|gb|ADY65431.1| two component response regulator [Agrobacterium sp. H13-3] Length = 224 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 87/168 (51%), Gaps = 2/168 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE + + + +A VP++ ++ S+ +D D+G DD + KP E+LAR+ A++ Sbjct: 57 GEGLNLVSSLRKARHSVPILVLTALGSVDHRVDGLDAGADDYLAKPFAIEELLARLRALH 116 Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR +S+ G + + + V G + RRE LE LM + V ++ + Sbjct: 117 RRGPSLSSQYVSFGNLSIDPKSNEVTVAGAIIEFRRREYLALEALMRRPNRIVTRSNLVE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 A+Y L DE +E N +++HIS++RKKL + + R +GY I N Sbjct: 177 AVYNLDDE-IESNALDAHISRIRKKLAQAEATVEIRAVRNIGYLIRAN 223 >gi|163736310|ref|ZP_02143729.1| two component transcriptional regulator, winged helix family protein [Phaeobacter gallaeciensis BS107] gi|163741161|ref|ZP_02148553.1| DNA-binding response regulator CtrA [Phaeobacter gallaeciensis 2.10] gi|161385514|gb|EDQ09891.1| DNA-binding response regulator CtrA [Phaeobacter gallaeciensis 2.10] gi|161390180|gb|EDQ14530.1| two component transcriptional regulator, winged helix family protein [Phaeobacter gallaeciensis BS107] Length = 239 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 4/153 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S + + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRMARI--ETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + TG I V D + EV G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSIINTGKISVNLDAKTVEVGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 +YG DE E +++ I KLRKKL G D Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSTATGGD 208 >gi|167565398|ref|ZP_02358314.1| two component transcriptional regulator, winged helix family protein [Burkholderia oklahomensis EO147] gi|167572502|ref|ZP_02365376.1| two component transcriptional regulator, winged helix family protein [Burkholderia oklahomensis C6786] Length = 223 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 5/165 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 60 LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++R E GP+ S R + GE PL RER +LE L+ G+ + K + I+ Sbjct: 120 LGHEHSRVECGPLAYDSVDRSFRLAGEPLPLTPRERSVLEVLILRNGRAINKETLSEKIF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 GL DE+V + +E ++ +LRKKL G V + R LGY ++ Sbjct: 180 GL-DESVNADAIEIYVHRLRKKLEGS-GVAIV-TLRGLGYLLEAQ 221 >gi|215425719|ref|ZP_03423638.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis T92] Length = 210 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 18/208 (8%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + + + A D + + L+ G ++ + +RA S VP+I ++ S Sbjct: 7 EGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 66 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138 + + G DD V KP RE++AR+ A+ RR ++S+ E+GP+R+ + Sbjct: 67 EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERH 126 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 V G+ LP +E +LEYLM N G+ + + Q+ ++G D + ++ H+ Sbjct: 127 VVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 181 Query: 199 KKLRNKLGFDPVD-----SKRFLGYSID 221 K+LR+K+ DP + + R LGY ++ Sbjct: 182 KRLRSKIEADPANPVHLVTVRGLGYKLE 209 >gi|15839882|ref|NP_334919.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis CDC1551] gi|308231563|ref|ZP_07412927.2| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu001] gi|308370423|ref|ZP_07421449.2| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu003] gi|308371683|ref|ZP_07425819.2| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu004] gi|308372906|ref|ZP_07430350.2| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu005] gi|308374017|ref|ZP_07667694.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu006] gi|308379790|ref|ZP_07487588.2| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu011] gi|308395531|ref|ZP_07669341.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu012] gi|13880018|gb|AAK44733.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis CDC1551] gi|308216807|gb|EFO76206.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu001] gi|308332020|gb|EFP20871.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu003] gi|308335807|gb|EFP24658.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu004] gi|308339412|gb|EFP28263.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu005] gi|308343288|gb|EFP32139.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu006] gi|308363617|gb|EFP52468.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu011] gi|308367307|gb|EFP56158.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu012] gi|323721166|gb|EGB30228.1| two component system sensor protein regX3 [Mycobacterium tuberculosis CDC1551A] Length = 230 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 18/208 (8%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + + + A D + + L+ G ++ + +RA S VP+I ++ S Sbjct: 27 EGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 86 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138 + + G DD V KP RE++AR+ A+ RR ++S+ E+GP+R+ + Sbjct: 87 EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERH 146 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 V G+ LP +E +LEYLM N G+ + + Q+ ++G D + ++ H+ Sbjct: 147 VVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 201 Query: 199 KKLRNKLGFDPVD-----SKRFLGYSID 221 K+LR+K+ DP + + R LGY ++ Sbjct: 202 KRLRSKIEADPANPVHLVTVRGLGYKLE 229 >gi|139438103|ref|ZP_01771656.1| Hypothetical protein COLAER_00644 [Collinsella aerofaciens ATCC 25986] gi|133776300|gb|EBA40120.1| Hypothetical protein COLAER_00644 [Collinsella aerofaciens ATCC 25986] Length = 230 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 6/134 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAI-YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G +D + KP H E+ AR+ ++ RR S+ +R + R V E L Sbjct: 97 LDAGANDYLTKPFHLDELAARIRSLTLRRFTQSDVVLTCRKLRFDTKARIASVDSETLSL 156 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESHISKLRKKLRNKLGF 207 R+E ILEYLM N+G+ V++ ++ ++ D +V N HIS LRKKLR LG+ Sbjct: 157 TRKETGILEYLMLNQGRPVSQEELIEHVW---DSSVNSFSNATRVHISSLRKKLRIALGY 213 Query: 208 DPVDSKRFLGYSID 221 DP+ ++ GY ++ Sbjct: 214 DPIRNRIGEGYVME 227 >gi|229829576|ref|ZP_04455645.1| hypothetical protein GCWU000342_01673 [Shuttleworthia satelles DSM 14600] gi|229791565|gb|EEP27679.1| hypothetical protein GCWU000342_01673 [Shuttleworthia satelles DSM 14600] Length = 235 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 89/172 (51%), Gaps = 2/172 (1%) Query: 48 AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE 107 AI ++ K + L +I A + +P++ ++ + + DSG DD + KP RE Sbjct: 59 AILDVMMPKMDGFTVLRKIRSAQNDIPVLMLTARSEIDDRVQGLDSGADDYLTKPFSTRE 118 Query: 108 ILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 ++ARV +I RR V+ + + G + + G L +E +ILE L+AN G+ Sbjct: 119 LIARVRSITRRRTVATDASMHLGRLTLDQLTCTANAPGGSLHLANKEYQILEMLLANPGQ 178 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ Q I+G F+ VE+NVV +IS LR+KL++ + + R LGY Sbjct: 179 IISPDQFMEKIWG-FESDVEQNVVWVNISNLRRKLKSIDAGIVIKASRGLGY 229 >gi|291523336|emb|CBK81629.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 246 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 7/164 (4%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R +R ++ ++ +S + ++ DSG +D + KP H +E+ ARV ++ RR Sbjct: 80 MEILRELRKENEETKVLILSARSQIADKVEGLDSGANDYMEKPFHLQELEARVRSLTRRK 139 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V N E G +R + R + L R+E ILEYL+ N+G+ V++ ++ ++ Sbjct: 140 FVQKNICLECGKLRFDTRERVAYAEDNPVALTRKENGILEYLLLNQGRPVSQEELIEHVW 199 Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +V+ + H+S LRKKL+ LG+DP+ +K GY I Sbjct: 200 ---DSSVDSFSGSIRVHMSSLRKKLKAGLGYDPIVNKIGEGYKI 240 >gi|158429258|pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From Mycobacterium Tuberculosis Length = 230 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 18/208 (8%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + + + A D + + L+ G ++ + +RA S VP+I ++ S Sbjct: 27 EGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 86 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138 + + G DD V KP RE++AR+ A+ RR ++S+ E+GP+R+ + Sbjct: 87 EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERH 146 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 V G+ LP +E +LEYLM N G+ + + Q+ ++G D + ++ H+ Sbjct: 147 VVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 201 Query: 199 KKLRNKLGFDPVD-----SKRFLGYSID 221 K+LR+K+ DP + + R LGY ++ Sbjct: 202 KRLRSKIEADPANPVHLVTVRGLGYKLE 229 >gi|121636407|ref|YP_976630.1| two component sensory transduction protein RegX3 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|2190436|emb|CAA73956.1| RegX3 [Mycobacterium bovis BCG] gi|121492054|emb|CAL70517.1| Two component sensory transduction protein regX3 (probably luxR-family) [Mycobacterium bovis BCG str. Pasteur 1173P2] Length = 227 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 18/208 (8%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + + + A D + + L+ G ++ + +RA S VP+I ++ S Sbjct: 24 EGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138 + + G DD V KP RE++AR+ A+ RR ++S+ E+GP+R+ + Sbjct: 84 EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERH 143 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 V G+ LP +E +LEYLM N G+ + + Q+ ++G D + ++ H+ Sbjct: 144 VVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 198 Query: 199 KKLRNKLGFDPVD-----SKRFLGYSID 221 K+LR+K+ DP + + R LGY ++ Sbjct: 199 KRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|78062614|ref|YP_372522.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77970499|gb|ABB11878.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 226 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 60 LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++R E GP+ S R + GE L RER +LE L+ G+ + K + I+ Sbjct: 120 LGHEHSRVECGPLSYDSIDRSFHLAGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LRKKL N G V + R LGY ++ Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENT-GIAIV-TLRGLGYLLE 219 >gi|77360226|ref|YP_339801.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas haloplanktis TAC125] gi|76875137|emb|CAI86358.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas haloplanktis TAC125] Length = 224 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 81/149 (54%), Gaps = 2/149 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131 +P++ ++ Q ++ D+G DD + KP H E++AR A+ RR +N GPI Sbjct: 73 IPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALIRRSAGKANPEMTAGPI 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 ++ + + V + L E ++LEYLM N K ++K+++ IY D ++ NV+E Sbjct: 133 KIHTRSQQVWVDDKELSLTAYEYKVLEYLMVNPQKVISKSELTEHIYDQ-DFDLDSNVIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +LRKKL + +PV++ R GY + Sbjct: 192 VFVLRLRKKLDPEGVLNPVETLRGRGYRL 220 >gi|320526762|ref|ZP_08027952.1| response regulator receiver domain protein [Solobacterium moorei F0204] gi|320132730|gb|EFW25270.1| response regulator receiver domain protein [Solobacterium moorei F0204] Length = 226 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/161 (34%), Positives = 88/161 (54%), Gaps = 6/161 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L I + S+ ++ +S LQ +D DSG +D + KP H E+ ARV ++ RR V Sbjct: 63 LHNIRKEDSETAVLILSARGHLQDKIDGLDSGANDYLCKPFHFEELEARVRSLTRRRTVQ 122 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 NN G + + + R +GE PL R+E +LEYL+ ++ + V + ++ ++ Sbjct: 123 NNVILSCGELSLDTKSRTAMARGEKLPLTRKELGLLEYLLLHQERPVPQEELIQHVW--- 179 Query: 182 DEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +V+ N + HIS LRKKLR LG+DP+ ++ GY I Sbjct: 180 DSSVDSFSNSIRVHISALRKKLRAALGYDPIANRIGQGYVI 220 >gi|15607632|ref|NP_215005.1| two component sensory transduction protein RegX3 [Mycobacterium tuberculosis H37Rv] gi|31791671|ref|NP_854164.1| two component sensory transduction protein RegX3 [Mycobacterium bovis AF2122/97] gi|148660258|ref|YP_001281781.1| two component sensory transduction protein RegX3 [Mycobacterium tuberculosis H37Ra] gi|148821690|ref|YP_001286444.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis F11] gi|215402254|ref|ZP_03414435.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis 02_1987] gi|215410013|ref|ZP_03418821.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis 94_M4241A] gi|215444596|ref|ZP_03431348.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis T85] gi|218752126|ref|ZP_03530922.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis GM 1503] gi|219556316|ref|ZP_03535392.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis T17] gi|253797420|ref|YP_003030421.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 1435] gi|254363455|ref|ZP_04979501.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis str. Haarlem] gi|254549440|ref|ZP_05139887.1| two component system sensor protein regX3 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185360|ref|ZP_05762834.1| two component system sensor protein regX3 [Mycobacterium tuberculosis CPHL_A] gi|260199491|ref|ZP_05766982.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T46] gi|260203644|ref|ZP_05771135.1| two component system sensor protein regX3 [Mycobacterium tuberculosis K85] gi|289441874|ref|ZP_06431618.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T46] gi|289446035|ref|ZP_06435779.1| two component system sensor protein regX3 [Mycobacterium tuberculosis CPHL_A] gi|289552742|ref|ZP_06441952.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 605] gi|289568414|ref|ZP_06448641.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T17] gi|289573078|ref|ZP_06453305.1| two component system sensor protein regX3 [Mycobacterium tuberculosis K85] gi|289744198|ref|ZP_06503576.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis 02_1987] gi|289756566|ref|ZP_06515944.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis T85] gi|289760610|ref|ZP_06519988.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis GM 1503] gi|294995998|ref|ZP_06801689.1| two component system sensor protein regX3 [Mycobacterium tuberculosis 210] gi|297632977|ref|ZP_06950757.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 4207] gi|297729952|ref|ZP_06959070.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN R506] gi|298523970|ref|ZP_07011379.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis 94_M4241A] gi|306779340|ref|ZP_07417677.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu002] gi|306802091|ref|ZP_07438759.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu008] gi|306806302|ref|ZP_07442970.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu007] gi|306966500|ref|ZP_07479161.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu009] gi|306970694|ref|ZP_07483355.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu010] gi|313657281|ref|ZP_07814161.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN V2475] gi|1731207|sp|Q11156|REGX3_MYCTU RecName: Full=Sensory transduction protein regX3 gi|38605703|sp|O07130|REGX3_MYCBO RecName: Full=Sensory transduction protein regX3 gi|1449289|emb|CAB00952.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY) [Mycobacterium tuberculosis H37Rv] gi|2190480|emb|CAA73958.1| RegX3 [Mycobacterium tuberculosis] gi|31617257|emb|CAD93364.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY) [Mycobacterium bovis AF2122/97] gi|134148969|gb|EBA41014.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis str. Haarlem] gi|148504410|gb|ABQ72219.1| two component sensory transduction protein RegX3 [Mycobacterium tuberculosis H37Ra] gi|148720217|gb|ABR04842.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis F11] gi|253318923|gb|ACT23526.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 1435] gi|289414793|gb|EFD12033.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T46] gi|289418993|gb|EFD16194.1| two component system sensor protein regX3 [Mycobacterium tuberculosis CPHL_A] gi|289437374|gb|EFD19867.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 605] gi|289537509|gb|EFD42087.1| two component system sensor protein regX3 [Mycobacterium tuberculosis K85] gi|289542168|gb|EFD45816.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T17] gi|289684726|gb|EFD52214.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis 02_1987] gi|289708116|gb|EFD72132.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis GM 1503] gi|289712130|gb|EFD76142.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis T85] gi|298493764|gb|EFI29058.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis 94_M4241A] gi|308327670|gb|EFP16521.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu002] gi|308347183|gb|EFP36034.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu007] gi|308351125|gb|EFP39976.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu008] gi|308355755|gb|EFP44606.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu009] gi|308359814|gb|EFP48665.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu010] gi|326902318|gb|EGE49251.1| two component system sensor protein regX3 [Mycobacterium tuberculosis W-148] gi|328457206|gb|AEB02629.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 4207] Length = 227 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 18/208 (8%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + + + A D + + L+ G ++ + +RA S VP+I ++ S Sbjct: 24 EGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138 + + G DD V KP RE++AR+ A+ RR ++S+ E+GP+R+ + Sbjct: 84 EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERH 143 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 V G+ LP +E +LEYLM N G+ + + Q+ ++G D + ++ H+ Sbjct: 144 VVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 198 Query: 199 KKLRNKLGFDPVD-----SKRFLGYSID 221 K+LR+K+ DP + + R LGY ++ Sbjct: 199 KRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|114797249|ref|YP_759671.1| DNA-binding response regulator CtrA [Hyphomonas neptunium ATCC 15444] gi|114737423|gb|ABI75548.1| DNA-binding response regulator CtrA [Hyphomonas neptunium ATCC 15444] Length = 237 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 97/216 (44%), Gaps = 32/216 (14%) Query: 6 DDRALVK-----------DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI 54 DDRAL + + Y+ G+DGV + EF+ L + D++ E Sbjct: 8 DDRALARSIELMLKAAGFNVYLTDLGEDGVDIG--KVYEFDMILLDLSLPDITGFEVL-- 63 Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 K L + R+ P++ +S P ++ + G DD + KP + E++AR+ A Sbjct: 64 ----KQLRMSRV-----NTPVMILSGNPDIEAKVKTLGYGADDYLTKPFNKDELIARITA 114 Query: 115 IYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 I RR S AE TG I V D + EV GE L +E + E L +G + K Sbjct: 115 IVRR---SKGHAESVIRTGDILVNLDAKTVEVDGERVHLTGKEYAMFELLSLRKGTTLTK 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 + +YG DE E +++ I KLRKKL+ G Sbjct: 172 EMFLNHLYGGLDEP-ELKIIDVFICKLRKKLQQATG 206 >gi|296111541|ref|YP_003621923.1| two-component system regulator [Leuconostoc kimchii IMSNU 11154] gi|295833073|gb|ADG40954.1| two-component system regulator [Leuconostoc kimchii IMSNU 11154] Length = 229 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 13/228 (5%) Query: 2 FVLIDDRALVKD---GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 +LI+D + D G++ F D V G + EFE Q S + I + L+ GE Sbjct: 7 ILLIEDDVNLADNIVGFLQDFADVNVVDNGLDG-EFEG--QESPYD---LIISDLMLPGE 60 Query: 59 KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E+ + +R + + P++ ++ SL ++ F+ G DD + KP + E+L RV A+ R Sbjct: 61 NGFEVIKYLRKNDIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLVRVKALLR 120 Query: 118 RLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R V +N G + + + R +V G+ L +E IL YL N+ V + QIF Sbjct: 121 RAGVYSEDNMIAVGDVMINLENRGVQVHGQQVKLVGKEFDILTYLAQNKNIIVTRDQIFD 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++G+ D NVV +++ LR+KL D + + R +G+ ++ N Sbjct: 181 RVWGI-DSDTTINVVNIYLNNLRRKLEAVGQNDLIKTLRNIGFILEVN 227 >gi|6531667|gb|AAF15533.1|AF196490_3 phosphate regulon response regulator PhoB [Caulobacter crescentus CB15] Length = 230 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 89/168 (52%), Gaps = 6/168 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R +R ++ VP+I ++ + D+G DD V KP E+ ARV A+ R Sbjct: 62 IEVCRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLR 121 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R++ ++++R G I + + G+ L E R+L+YLM + G+ ++ Q+ Sbjct: 122 RIRPGLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 A++G D VE V+ HI +LRK+L DP+ + R GYS+D + Sbjct: 182 AVWG-SDVYVEARTVDVHIGRLRKELNGTTDADPIRTVRSAGYSLDMD 228 >gi|222085311|ref|YP_002543841.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221722759|gb|ACM25915.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 223 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H E+LAR+ A+ RR S++ GP+R+ + V G+ L Sbjct: 91 IDAGADDYVAKPFHVEEVLARIRALIRRAAGHSSSEIICGPVRLDTKSSKASVDGKPLKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM ++G+ V++T++ +Y FD + N +E + +LRK K+G D Sbjct: 151 TSHEYRLLAYLMHHKGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KMGVD 204 Query: 209 PVDSKRFLGYSI 220 +++ R LGY I Sbjct: 205 LIETVRGLGYRI 216 >gi|241203804|ref|YP_002974900.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857694|gb|ACS55361.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 223 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H E+LAR+ A+ RR S++ GP+R+ + V G L Sbjct: 91 IDAGADDYVTKPFHVEEVLARLRALIRRAAGHSSSEIICGPVRLDTKSSKATVNGTTLKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V++T++ +Y FD + N +E + +LRK K+G D Sbjct: 151 TSHEYRLLSYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KMGVD 204 Query: 209 PVDSKRFLGYSI 220 +++ R LGY I Sbjct: 205 LIETVRGLGYRI 216 >gi|190890997|ref|YP_001977539.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190696276|gb|ACE90361.1| two-component response regulator protein [Rhizobium etli CIAT 652] Length = 223 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 8/154 (5%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127 A VP++ ++ + D+G DD V KP H E+LAR+ A+ RR +++ Sbjct: 69 AGRAVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRRAAGHASSEIV 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 GP+R+ + V G L E R+L YLM + G+ V++T++ +Y FD + Sbjct: 129 CGPVRLDTKSSKATVNGTALKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYDQDFDR--D 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N +E + +LRK K+G D +++ R LGY I Sbjct: 187 SNTIEVFVGRLRK----KMGVDLIETVRGLGYRI 216 >gi|300868620|ref|ZP_07113234.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300333379|emb|CBN58426.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 225 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/214 (28%), Positives = 105/214 (49%), Gaps = 16/214 (7%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGK-GEKVLELPRI 66 L + G++ + D+G E +L++ E DV ++ L GK G +L+ R Sbjct: 19 GLKEQGFVVDYCDNG----------DEGYLRAMDNEYDVLVLDIMLPGKDGLAILKSLR- 67 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNR 125 R+ VP+I ++ L L+ + G DD + KP E++AR+ A+ RR+ N Sbjct: 68 -RSGRNVPVILLTARNELDDRLEGLNLGADDYLAKPFFVEELIARIHAVIRRVSGERQNI 126 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 GP+++ R + L RE +LEYLM + G+ + +TQI ++G +D Sbjct: 127 LSLGPLKLDRITRQVTCNQQSVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG-YDFNP 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 N+V+ I ++RKKL G ++S R +GY Sbjct: 186 TTNLVDVCIQRIRKKLERMGGASCIESVRGVGYC 219 >gi|170698062|ref|ZP_02889143.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170137023|gb|EDT05270.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 225 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 109/219 (49%), Gaps = 7/219 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D A + + L + +++ E + + + R D ++ L G G++V Sbjct: 3 LLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R+ R + VP++ ++ + S+ +D F +G DD V KP RE++AR+ A+ RR Sbjct: 63 L--ARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V+ + G + R+ V L RRE ILE LM + K V+K ++ +++ Sbjct: 121 GVATTQLVCGDLVYAFGTREFRCGDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L DE + ++ +I +LRK L L + + R LGY Sbjct: 181 LDDEP-SADAIDIYIHRLRKHL--ALSTAEIITLRGLGY 216 >gi|170742557|ref|YP_001771212.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168196831|gb|ACA18778.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 227 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 8/156 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 RA + P+I ++ ++ FD+G DD V KP H E+LARV AI RR ++++ Sbjct: 68 RAQVKTPVIILTARDRWSDKVNGFDAGADDYVTKPFHMEELLARVRAILRRAAGHASSQI 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 GP+ + + V G L E R+L YLM + G+ V++ ++ +Y FD Sbjct: 128 SAGPVTLDTRSGRVFVNGSPVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYDQDFDR-- 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + N +E + +LRK KL D + + R LGY ID Sbjct: 186 DSNTIEVFVGRLRK----KLAVDLIQTVRGLGYLID 217 >gi|119469337|ref|ZP_01612276.1| response regulator in two-component regulatory system with PhoQ [Alteromonadales bacterium TW-7] gi|119447201|gb|EAW28470.1| response regulator in two-component regulatory system with PhoQ [Alteromonadales bacterium TW-7] Length = 224 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 3/162 (1%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 +EL RA +P++ ++ Q ++ D+G DD + KP H E+ AR A+ RR Sbjct: 60 IELINKARAQGVTIPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELAARCNALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +N GPI++ + + V + L E ++LEYLM N K ++K+++ IY Sbjct: 120 AGKANPEMTAGPIKIHTRSQQVWVDDKELTLTAYEYKVLEYLMVNPQKVISKSELTEHIY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D ++ NV+E + +LRKKL + +PV++ R GY + Sbjct: 180 DQ-DFDLDSNVIEVFVLRLRKKLDPEGTLNPVETLRGRGYRL 220 >gi|315126788|ref|YP_004068791.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas sp. SM9913] gi|315015302|gb|ADT68640.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas sp. SM9913] Length = 224 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 2/149 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131 +P++ ++ Q ++ D+G DD + KP H E++AR A+ RR +N GPI Sbjct: 73 IPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALIRRSAGKANPEMTAGPI 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 ++ + + V + L E ++LEYLM N K ++K+++ IY D ++ NV+E Sbjct: 133 KIHTRSQQVWVNDKELSLTAYEYKVLEYLMVNPQKVISKSELTEHIYDQ-DFDLDSNVIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +LRKKL +PV++ R GY + Sbjct: 192 VFVLRLRKKLDPDGVLNPVETLRGRGYRL 220 >gi|289748982|ref|ZP_06508360.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T92] gi|289689569|gb|EFD56998.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T92] Length = 198 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 88/165 (53%), Gaps = 15/165 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKV 121 +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR ++ Sbjct: 38 LRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEM 97 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S+ E+GP+R+ + V G+ LP +E +LEYLM N G+ + + Q+ ++G Sbjct: 98 SDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-A 156 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221 D + ++ H+ K+LR+K+ DP + + R LGY ++ Sbjct: 157 DYVGDTKTLDVHV----KRLRSKIEADPANPVHLVTVRGLGYKLE 197 >gi|170702017|ref|ZP_02892936.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170133079|gb|EDT01488.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 224 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 60 LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++R E GP+ S R + GE L RER +LE L+ G+ + K + I+ Sbjct: 120 LGHEHSRVECGPLSYDSIDRSFHLAGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LRKKL N G V + R LGY ++ Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENT-GVAIV-TLRGLGYLLE 219 >gi|300172681|ref|YP_003771846.1| two-component response regulator [Leuconostoc gasicomitatum LMG 18811] gi|299887059|emb|CBL91027.1| Two-component response regulator [Leuconostoc gasicomitatum LMG 18811] Length = 229 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 13/223 (5%) Query: 2 FVLIDDRALVKD---GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 +LI+D + D G++ F D V G + EFE Q S + I + L+ GE Sbjct: 7 ILLIEDDVNLADNIVGFLEDFADVNVVNNGLDG-EFEG--QESPYD---LIISDLMLPGE 60 Query: 59 KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E+ + +R + + P++ ++ SL ++ F+ G DD + KP + E+L RV A+ R Sbjct: 61 NGFEVIKYLRKNGIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLVRVKALLR 120 Query: 118 RLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R V +N G + + + R +V G+ L +E IL YL N+ V + QIF Sbjct: 121 RAGVYSEDNMIAVGDVLINLENRGVQVHGQQIKLVGKEFDILTYLAQNKNIIVTRDQIFD 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G+ D NVV +++ LR+KL + D + + R +G+ Sbjct: 181 RVWGI-DSDTTINVVNIYLNNLRRKLESVGQNDLIKTLRNIGF 222 >gi|27379913|ref|NP_771442.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27353066|dbj|BAC50067.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 224 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 2/163 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ + +P++ VP+I ++ L + DSG DD + KP E+LAR+ A+ Sbjct: 57 GDGLALIPKLRARADGVPIIVLTARGELADRIAGLDSGADDYLAKPFAVEELLARLRAVM 116 Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR ++ + G + R+ + G+ F LPRRE +LE L+ G+ V ++ + Sbjct: 117 RRPAGLTPDVIRAGRLAFDVGHREASIDGQPFELPRRELLVLEALIRRIGRTVIRSALEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 A+Y FD+ ++ N +++HIS+LR+KL + R +GY Sbjct: 177 AVYN-FDDEIQSNALDTHISRLRRKLAEADAGIEIHGIRGVGY 218 >gi|261250867|ref|ZP_05943441.1| two-component system response regulator QseB [Vibrio orientalis CIP 102891] gi|260937740|gb|EEX93728.1| two-component system response regulator QseB [Vibrio orientalis CIP 102891] Length = 218 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 96/195 (49%), Gaps = 14/195 (7%) Query: 36 EWL-QSSAREDVSAIEAFLI-------GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTT 87 +WL + S + V ++E F + G+ + L + +A +P+I +S S + Sbjct: 28 DWLTEGSGVKQVLSLETFTLIILDLSLPDGDGITLLKSLRQAKYDLPIIILSARDSNKDI 87 Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEV 146 + DSG D+ + KP E+LAR+ I RR S+ T G + + + EV Sbjct: 88 ILGLDSGADEYIGKPFSFEELLARIRVIVRRQSSSSTHIITKGNFELNLNDYIVKYNDEV 147 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L + E +IL YL++N V+K Q+ I G + E EN VE HI LRKKL N + Sbjct: 148 LKLTKNEFKILSYLVSNNSLVVSKPQLLQIING-WSETSTENSVEVHIHNLRKKLPNNV- 205 Query: 207 FDPVDSKRFLGYSID 221 + + R +GY+I+ Sbjct: 206 ---IKTIRGIGYTIE 217 >gi|313114775|ref|ZP_07800276.1| putative subtilin biosynthesis regulatory protein SpaR [Faecalibacterium cf. prausnitzii KLE1255] gi|310622905|gb|EFQ06359.1| putative subtilin biosynthesis regulatory protein SpaR [Faecalibacterium cf. prausnitzii KLE1255] Length = 226 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 2/147 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE + R IR+ ++VP++ +S L+ G DD ++KP E+ ARVAA Sbjct: 56 GEDGFAVCRRIRSLTEVPILFLSARTDEAAVLEGLGIGADDFLSKPFRVAELRARVAAHL 115 Query: 117 RRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + +R + R V+G V PL R E I EYL + G+ K QI+ Sbjct: 116 RRQSRTPAHRMVRSGVAFDLTARSAAVEGTVLPLTRSEYAICEYLALHAGQTFTKEQIYE 175 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR 202 A++G+ D ++ V HI +R KLR Sbjct: 176 AVFGI-DGTADDTAVTQHIKNIRAKLR 201 >gi|107026470|ref|YP_623981.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692342|ref|YP_837875.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|254248532|ref|ZP_04941852.1| DNA-binding response regulator [Burkholderia cenocepacia PC184] gi|105895844|gb|ABF79008.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116650342|gb|ABK10982.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|124875033|gb|EAY65023.1| DNA-binding response regulator [Burkholderia cenocepacia PC184] Length = 224 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 60 LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++R E GP+ S R + GE L RER +LE L+ G+ + K + I+ Sbjct: 120 LGHEHSRVECGPLSYDSIDRSFHLAGEPLSLTPRERSVLEVLILRNGRAINKDTLSEKIF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LRKKL N G V + R LGY ++ Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENT-GVAIV-TLRGLGYLLE 219 >gi|221196554|ref|ZP_03569601.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2M] gi|221203223|ref|ZP_03576242.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2] gi|221177157|gb|EEE09585.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2] gi|221183108|gb|EEE15508.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2M] Length = 224 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 60 LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++R E GP+ S R + E PL RER +LE L+ G+ + K + I+ Sbjct: 120 LGHEHSRVECGPLAYDSVDRSFRLADEPLPLTPRERSVLEVLILRNGRAINKETLSEKIF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LRKKL N G V + R LGY ++ Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENS-GVAIV-TLRGLGYLLE 219 >gi|187478610|ref|YP_786634.1| two-component response regulator [Bordetella avium 197N] gi|115423196|emb|CAJ49727.1| two-component response regulator [Bordetella avium 197N] Length = 223 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 86/167 (51%), Gaps = 5/167 (2%) Query: 57 GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ LE+ R +R +QVP++ ++ L + D+G DD V KP E+ ARV A+ Sbjct: 56 GQSGLEVLRQLRQEGNQVPVLILTARDGLDDRVAGLDAGADDYVTKPFDLPELAARVRAL 115 Query: 116 -YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + E GP+ + GR+ V G+ L RE +LE LMA G+ + K QI Sbjct: 116 GRRRTGQAQPLIEVGPLVFDTVGREVRVNGQRLSLSVRELSVLEMLMARVGRVITKRQIV 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++ +D EN VE ++ +LRK+L + + R GY +D Sbjct: 176 NSLSA-WDADFSENAVEVYVYRLRKRLEGTGA--SIQTVRGFGYMLD 219 >gi|332533632|ref|ZP_08409492.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas haloplanktis ANT/505] gi|332036913|gb|EGI73373.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas haloplanktis ANT/505] Length = 224 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 2/149 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131 +P++ ++ Q ++ D+G DD + KP H E++AR A+ RR +N GPI Sbjct: 73 IPILILTARDRWQDKVEGLDAGADDYLTKPFHVEELIARCNALIRRSAGKANPEMTAGPI 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 ++ + + V + L E ++LEYLM N K ++K+++ IY D ++ NV+E Sbjct: 133 KIHTRSQQVWVDDKELSLTAYEYKVLEYLMVNPQKVISKSELTEHIYDQ-DFDLDSNVIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +LRKKL +PV++ R GY + Sbjct: 192 VFVLRLRKKLDPDGVLNPVETLRGRGYRL 220 >gi|316935037|ref|YP_004110019.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315602751|gb|ADU45286.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 224 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 6/155 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 P+I ++ L + DSG DD + KP E++AR+ A+ RR +S + G Sbjct: 72 MTPIIVLTARGDLAQRVAGLDSGADDYLGKPFAIAELMARLRAVLRRPSDLSEEILKLG- 130 Query: 131 IRVFSDG--RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 R+ DG R V G LPRRE +LE L+ G+ VA+ + A+YG F++ ++ N Sbjct: 131 -RLCFDGAHRQASVAGVDLNLPRRELLVLEALLRRSGRTVARDALVHAVYG-FEDEIQSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +++HIS+LR+KL + + + R +GY I+ + Sbjct: 189 ALDTHISRLRRKLIDADAGVEIHTIRGIGYLINRS 223 >gi|206563234|ref|YP_002233997.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198039274|emb|CAR55239.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 226 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 60 LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++R E GP+ S R + GE L RER +LE L+ G+ + K + I+ Sbjct: 120 LGHEHSRVECGPLSYDSIDRSFHLAGEPLSLTPRERSVLEVLILRNGRAINKDTLSEKIF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LRKKL N G V + R LGY ++ Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENT-GVAIV-TLRGLGYLLE 219 >gi|220924050|ref|YP_002499352.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219948657|gb|ACL59049.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 225 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 8/156 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 RA + P+I ++ ++ FD+G DD V KP H E+LARV AI RR ++++ Sbjct: 68 RAQVKTPVIILTARDRWSDKVNGFDAGADDYVTKPFHMEELLARVRAILRRAAGHASSQI 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 GP+ + + V G L E R+L YLM + G+ V++ ++ +Y FD Sbjct: 128 SAGPVTLDTRSGRVFVDGSPVKLTSHEYRLLSYLMHHTGRVVSRAELTEHLYDQDFDR-- 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + N +E + +LRK KL D + + R LGY ID Sbjct: 186 DSNTIEVFVGRLRK----KLAVDLIQTVRGLGYLID 217 >gi|160943686|ref|ZP_02090918.1| hypothetical protein FAEPRAM212_01181 [Faecalibacterium prausnitzii M21/2] gi|158445141|gb|EDP22144.1| hypothetical protein FAEPRAM212_01181 [Faecalibacterium prausnitzii M21/2] Length = 220 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 2/147 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE + R IR+ ++VP++ +S L+ G DD ++KP E+ ARVAA Sbjct: 50 GEDGFAVCRRIRSLTEVPILFLSARTDEAAVLEGLGIGADDFLSKPFRVAELRARVAAHL 109 Query: 117 RRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + +R + R V+G V PL R E I EYL + G+ K QI+ Sbjct: 110 RRQSRTPAHRMVRSGVAFDLTARSAAVEGTVLPLTRSEYAICEYLALHAGQTFTKEQIYE 169 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR 202 A++G+ D ++ V HI +R KLR Sbjct: 170 AVFGI-DGTADDTAVTQHIKNIRAKLR 195 >gi|170735656|ref|YP_001776916.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169817844|gb|ACA92426.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 224 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 60 LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++R E GP+ S R + GE L RER +LE L+ G+ + K + I+ Sbjct: 120 LGHEHSRVECGPLSYDSIDRSFHLAGEPLSLTPRERSVLEVLILRNGRAINKDTLSEKIF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LRKKL N G V + R LGY ++ Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENT-GVAIV-TLRGLGYLLE 219 >gi|16124549|ref|NP_419113.1| phosphate regulon response regulator PhoB [Caulobacter crescentus CB15] gi|221233235|ref|YP_002515671.1| phosphate regulon response regulator PhoB [Caulobacter crescentus NA1000] gi|13421435|gb|AAK22281.1| phosphate regulon response regulator PhoB [Caulobacter crescentus CB15] gi|220962407|gb|ACL93763.1| phosphate regulon response regulator PhoB [Caulobacter crescentus NA1000] Length = 230 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 6/168 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R +R ++ VP+I ++ + D+G DD V KP E+ ARV A+ R Sbjct: 62 IEVCRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLR 121 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R++ ++++R G I + + G+ L E R+L+YLM + G+ ++ Q+ Sbjct: 122 RIRPGLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 A++G D VE V+ HI +LRK L DP+ + R GYS+D + Sbjct: 182 AVWG-SDVYVEARTVDVHIGRLRKALNGTTDADPIRTVRSAGYSLDMD 228 >gi|295108877|emb|CBL22830.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 225 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 6/153 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-E 127 + S P++ +S +Q ++ D G +D + KP H E+ AR+ ++ RR + + + Sbjct: 69 SDSTTPVLILSARGQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRKFIQEDICLK 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G I + R V L R+E +LEY + ++G+ ++ ++ I L+D +V Sbjct: 129 CGRIIFDTRTRKASVDDATLSLTRKESALLEYFLLHQGRIISPEEM---IEHLWDGSVNS 185 Query: 188 --NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 N + HIS LRKKLR LGFDP+ +K GY Sbjct: 186 FSNSIRVHISSLRKKLRAALGFDPIQNKIGQGY 218 >gi|171318586|ref|ZP_02907735.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171096240|gb|EDT41149.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 224 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 60 LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++R E GP+ S R + GE L RER +LE L+ G+ + K + I+ Sbjct: 120 LGHEHSRVECGPLSYDSIDRGFHLAGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LRKKL N G V + R LGY ++ Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENT-GVAIV-TLRGLGYLLE 219 >gi|172063171|ref|YP_001810822.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171995688|gb|ACB66606.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 224 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 60 LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++R E GP+ S R + GE L RER +LE L+ G+ + K + I+ Sbjct: 120 LGHEHSRVECGPLSYDSIDRSFHLGGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LRKKL N G V + R LGY ++ Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENT-GVAIV-TLRGLGYLLE 219 >gi|332184568|gb|AEE26822.1| response regulator in two-component regulatory system with PhoQ [Francisella cf. novicida 3523] Length = 229 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + L +I+R + P+I +S S + + SG DD + KP E++ RV +Y+R Sbjct: 64 ISLLKILRKQNVNTPIIILSALDSTENKIQGLKSGSDDYLTKPFSIDELMIRVNILYKRT 123 Query: 120 K----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K +R G I + + G++ L +RE ++L L+ ++ + V+KT I Sbjct: 124 KQITEAQTHRLSCGDIVLDELAHEVRRNGDLILLQQREYKVLHLLLKHKNEVVSKTMILK 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVE HIS+LR KL DP+ + R GY I Sbjct: 184 EVWD-YDFDPQTNVVEVHISRLRNKLTEGGLIDPIKTIRGFGYVI 227 >gi|332716515|ref|YP_004443981.1| two component response regulator [Agrobacterium sp. H13-3] gi|325063200|gb|ADY66890.1| two component response regulator [Agrobacterium sp. H13-3] Length = 244 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 81/146 (55%), Gaps = 2/146 (1%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIR 132 P+I ++ +L ++ + G DD + KP E+LAR+ A+ RR S A+ G + Sbjct: 94 PVIVLTAQGTLADRVNGLNLGADDYLAKPFAVEELLARIRALMRRPAGSVTMTAKLGKLE 153 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + R+ ++GE L RRE ILE L+ +G+ V ++ + A+Y FD+ ++ N ++S Sbjct: 154 FCFETREVRIKGEFIALTRRELLILEALLRRQGRTVLRSVLEEAVYN-FDDEIQSNALDS 212 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218 HIS+LR+KL+ V R +GY Sbjct: 213 HISRLRRKLQAADAGLEVHGIRGVGY 238 >gi|163814718|ref|ZP_02206107.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759] gi|158450353|gb|EDP27348.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759] Length = 225 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 4/163 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRR- 118 LE+ R IR S VP+I ++ ++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 62 LEVLRRIRKESVVPVIMLTARDAVMDKVSGLDAGADDYLTKPFAIEELLARIRVALKRRG 121 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++V +R E + + +D + V GE L RE +L LM N+ + + ++ SA+ Sbjct: 122 TVEVHTHRIEIRGVCMDTDRHEVTVDGESVELTNREFELLRTLMENKDIVMDREKLLSAV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D E N+++ ++ LR K+ ++ G + + R +GY I Sbjct: 182 CG-YDYLGETNIIDVYVRYLRTKIDDRFGVKLITTVRGVGYVI 223 >gi|172059097|ref|YP_001806749.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171991614|gb|ACB62533.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 225 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 109/219 (49%), Gaps = 7/219 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D A + + L + +++ E + + + R D ++ L G G++V Sbjct: 3 LLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R+ R + VP++ ++ + S+ +D F +G DD V KP RE++AR+ A+ RR Sbjct: 63 L--ARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V+ + G + R+ V L RRE ILE LM + K V+K ++ +++ Sbjct: 121 GVATTQLVCGDLVYAFGTREFRCGDAVLALRRREHVILETLMLQQNKTVSKARLMDSVFA 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L DE + ++ +I +LRK L L + + R LGY Sbjct: 181 LDDEP-SADAIDIYIHRLRKHL--ALSTAEIITLRGLGY 216 >gi|115358419|ref|YP_775557.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115283707|gb|ABI89223.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 224 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 60 LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++R E GP+ S R + GE L RER +LE L+ G+ + K + I+ Sbjct: 120 LGHEHSRVECGPLSYDSIDRSFHLGGEPLSLTPRERSVLEVLILRNGRAINKETLSEKIF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LRKKL N G V + R LGY ++ Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENT-GVAIV-TLRGLGYLLE 219 >gi|218508476|ref|ZP_03506354.1| two-component response regulator protein [Rhizobium etli Brasil 5] Length = 199 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H E+LAR+ A+ RR +++ GP+R+ + V G L Sbjct: 67 IDAGADDYVTKPFHVEEVLARIRALIRRAAGHASSEIVCGPVRLDTKSSKATVNGTALKL 126 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V++T++ +Y FD + N +E + +LRK K+G D Sbjct: 127 TSHEYRLLSYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KMGVD 180 Query: 209 PVDSKRFLGYSI 220 +++ R LGY I Sbjct: 181 LIETVRGLGYRI 192 >gi|115525450|ref|YP_782361.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115519397|gb|ABJ07381.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 224 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 6/153 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 P+I ++ L + DSG DD + KP E+LAR+ A+ RR +S + G Sbjct: 72 MTPIIVLTARGDLAERVAGLDSGADDYLGKPFAIAELLARLRAVLRRPSDLSEEILKLG- 130 Query: 131 IRVFSDG--RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 R+ DG R V G LPRRE +LE L+ + VA+ + A+YG FD+ ++ N Sbjct: 131 -RLCFDGAHRQASVAGVNLNLPRRELLVLEALLRRSSRTVARVALDQAVYG-FDDEIQSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++HIS+LR+KL + + + R +GY I+ Sbjct: 189 ALDTHISRLRRKLIDADAGVEIHTIRGIGYLIN 221 >gi|227821352|ref|YP_002825322.1| two-component response regulator protein [Sinorhizobium fredii NGR234] gi|227340351|gb|ACP24569.1| two-component response regulator protein [Sinorhizobium fredii NGR234] Length = 223 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H +E+LAR+ A+ RR +++ GP+R+ + G V G L Sbjct: 91 IDAGADDYVAKPFHVQEVLARIRALIRRAAGHASSEIVCGPVRLDTKGSKATVGGVALKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V++T++ +Y FD + N +E I +LRKK+ N L Sbjct: 151 TSHEFRLLSYLMHHMGQVVSRTELVEHMYDQDFDR--DSNTIEVFIGRLRKKIGNDL--- 205 Query: 209 PVDSKRFLGYSI 220 +++ R LGY + Sbjct: 206 -IETVRGLGYRM 216 >gi|86356926|ref|YP_468818.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86281028|gb|ABC90091.1| two-component response regulator protein [Rhizobium etli CFN 42] Length = 223 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H E+LAR+ A+ RR +++ GP+R+ + V G L Sbjct: 91 IDAGADDYVTKPFHVEEVLARIRALIRRAAGHASSEIICGPVRLDTKSSKATVNGAALKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V++T++ +Y FD + N +E + +LRK K+G D Sbjct: 151 TSHEYRLLAYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KMGVD 204 Query: 209 PVDSKRFLGYSI 220 +++ R LGY I Sbjct: 205 LIETVRGLGYRI 216 >gi|150395854|ref|YP_001326321.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|150027369|gb|ABR59486.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 223 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 73/132 (55%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H E+LAR+ A+ RR +++ GP+R+ + G V G L Sbjct: 91 IDAGADDYVAKPFHVEEVLARIRALIRRAAGHASSEIVCGPVRLDTKGSKATVAGVALKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V++T++ +Y FD + N +E I +LRKK+ N L Sbjct: 151 TSHEFRLLSYLMHHMGQVVSRTELVEHMYDQDFDR--DSNTIEVFIGRLRKKIGNDL--- 205 Query: 209 PVDSKRFLGYSI 220 +++ R LGY + Sbjct: 206 -IETVRGLGYRM 216 >gi|254504173|ref|ZP_05116324.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] gi|222440244|gb|EEE46923.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] Length = 220 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 105/203 (51%), Gaps = 10/203 (4%) Query: 23 GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIRAHSQVPLIGISDY 81 G++ + +LE L R DV ++ L G G +L+ R+ + P++ ++ Sbjct: 21 GIACDLAKTLEEARSLLDVQRYDVIVLDLNLPDGLGTDLLKELRL--KSDRTPVLVLTAE 78 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---TGPIRVFSDGR 138 S+ + +SG DD + KP HRE+ AR+ A+YRR + ++AE G + + R Sbjct: 79 FSVDDRVSTLNSGADDYLVKPFDHRELEARIQALYRREQ--GDKAEELAIGDLTFNATAR 136 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 ++ L RRE +LE + NRGK ++K ++F I+ D V N +E ++++LR Sbjct: 137 VVRLKETPVNLTRREFSLLELFIRNRGKVLSKERLFEGIFSFQDTDVSMNALELYVARLR 196 Query: 199 KKLRNKLGFDPVDSKRFLGYSID 221 KKL ++++R LGY ++ Sbjct: 197 KKLSGSSVV--IETQRGLGYKLE 217 >gi|15964767|ref|NP_385120.1| transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309654|ref|ZP_07589306.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307319451|ref|ZP_07598878.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|15073945|emb|CAC45586.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Sinorhizobium meliloti 1021] gi|306894823|gb|EFN25582.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306899866|gb|EFN30489.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 223 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 73/132 (55%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H E+LAR+ A+ RR +++ GP+R+ + G V G L Sbjct: 91 IDAGADDYVAKPFHVEEVLARIRALIRRAAGHASSEIVCGPVRLDTKGSKATVAGVALKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V++T++ +Y FD + N +E I +LRKK+ N L Sbjct: 151 TSHEFRLLSYLMHHMGQVVSRTELVEHMYDQDFDR--DSNTIEVFIGRLRKKIGNDL--- 205 Query: 209 PVDSKRFLGYSI 220 +++ R LGY + Sbjct: 206 -IETVRGLGYRM 216 >gi|257439219|ref|ZP_05614974.1| transcriptional regulatory protein CutR [Faecalibacterium prausnitzii A2-165] gi|257198352|gb|EEU96636.1| transcriptional regulatory protein CutR [Faecalibacterium prausnitzii A2-165] Length = 225 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 72/131 (54%), Gaps = 6/131 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAI-YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G +D + KP H E+ AR+ ++ R+ N G + + R V G+ L Sbjct: 91 LDAGANDYLAKPFHLAELEARIRSLTLRQFTQQNVLLSCGGLSFDTRSRTAAVNGQTLTL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESHISKLRKKLRNKLGF 207 R+E ILEYLM ++G+ V++ ++ ++ D +V+ N + HIS LRKKLR LG+ Sbjct: 151 TRKETGILEYLMVHQGRPVSQEELIDHVW---DNSVDSFSNSIRVHISALRKKLRAVLGY 207 Query: 208 DPVDSKRFLGY 218 DP+ ++ GY Sbjct: 208 DPIRNRIGEGY 218 >gi|332533011|ref|ZP_08408881.1| response regulator [Pseudoalteromonas haloplanktis ANT/505] gi|332037490|gb|EGI73943.1| response regulator [Pseudoalteromonas haloplanktis ANT/505] Length = 219 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 109/222 (49%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60 +L++D LV G I +G S+E +++ E L S E V G G +V Sbjct: 3 LLLVEDDHLVAQGLIRSLRQEGYSVEHSGTVKHALECLSSGEIELVILDLGLPDGDGSQV 62 Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L + I+A +V P++ ++ S+ + D G DD + KP E+ AR+ RR+ Sbjct: 63 L---KYIKAQKKVIPVVILTARGSIDDKVQGLDMGADDYLAKPFDPAELFARLRVASRRI 119 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ G + + + ++ G+ LPR+E +L+ LM N+G+ +K Q+ + +Y Sbjct: 120 NQTQSSLLRCGDVVMDTSAHTVKLSGQSLTLPRKEYMLLKALMENQGRVQSKQQLENKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E V N +E HI LRKK + D + + R +GY + Sbjct: 180 Q-WGEEVGSNAIEVHIHHLRKKFPS----DFIKTLRGIGYVV 216 >gi|170690127|ref|ZP_02881294.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170144562|gb|EDT12723.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 223 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 83/157 (52%), Gaps = 4/157 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ R VP+I ++ + S +D F++G DD V KP RE++AR+ A+ RR Sbjct: 63 LARLRRRGDMVPVIMLTAHGSTDDKVDCFNAGADDYVVKPFDVRELVARIKALIRRQSGG 122 Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + T G ++ SD R+ E L RRE +LE LM +GK V+K+ + +++ L Sbjct: 123 MSSCLTCGDLQYISDTREFFHNDERLALRRREHTVLETLMLRQGKTVSKSVLMESVFSLD 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + ++ +I +LRK L + + R LGY Sbjct: 183 DEP-SADAIDIYIHRLRKHLARSSA--QIMTLRGLGY 216 >gi|160903356|ref|YP_001568937.1| two component transcriptional regulator [Petrotoga mobilis SJ95] gi|160361000|gb|ABX32614.1| two component transcriptional regulator, winged helix family [Petrotoga mobilis SJ95] Length = 232 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 91/172 (52%), Gaps = 5/172 (2%) Query: 52 FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 ++ G V ELP++ + ++ +I IS + + +SG DD + KP + RE+ AR Sbjct: 54 LMLPDGNAVDELPKVRALNREIGIIIISAKNTDGEKILGIESGADDYITKPFNPREVTAR 113 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 V A+ +RLK S ++ GP+ ++S+ +G+ L +E IL+ L N K + Sbjct: 114 VRALLKRLKKSESKMIFGPMEIYSNNYLVTYKGKNIELTSKEFEILDLLARNSEKVYTRE 173 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +I I+ DE + + V++ HIS +R+K+G + + + R +GY + N Sbjct: 174 EIIDKIW-FGDEFITDRVIDVHIS----MIRSKIGKEWIKTIRNVGYKFNKN 220 >gi|88860809|ref|ZP_01135446.1| probable two-component response regulator transcription regulator protein [Pseudoalteromonas tunicata D2] gi|88817404|gb|EAR27222.1| probable two-component response regulator transcription regulator protein [Pseudoalteromonas tunicata D2] Length = 227 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 9/217 (4%) Query: 13 DGYIALFGDDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 D +A F + G+ EG+ + + +E L+ + D I ++ LE+ + +R Sbjct: 9 DDRVASFLERGLRAEGYFIVRACDGKEGLELAQEGDFQLILLDIMLPSLNGLEVCQALRI 68 Query: 70 HSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSN-NR 125 VP+I ++ Q + G DD V KP + E+LAR+ A+ RR ++ N N Sbjct: 69 KKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTPNEIKNTNI 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E GP+ + E L +E ILE LM N GK +++ +I S ++G+ + + Sbjct: 129 LEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNVWGMEMDPM 188 Query: 186 EENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 NVV+ +I KLRKKL G +++KR +GY ++ Sbjct: 189 -TNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRLN 224 >gi|84500835|ref|ZP_00999070.1| DNA-binding response regulator CtrA [Oceanicola batsensis HTCC2597] gi|84390902|gb|EAQ03320.1| DNA-binding response regulator CtrA [Oceanicola batsensis HTCC2597] Length = 238 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 4/153 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S + + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRVSRI--ETPILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + TG + V D + EV+G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSIIRTGKVSVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 +YG DE E +++ I KLRKKL G D Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSTATGGD 208 >gi|254476592|ref|ZP_05089978.1| two component transcriptional regulator, winged helix family [Ruegeria sp. R11] gi|214030835|gb|EEB71670.1| two component transcriptional regulator, winged helix family [Ruegeria sp. R11] Length = 239 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S + + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRMARI--ETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + TG I V D + EV G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSIINTGKISVNLDAKTVEVGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 +YG DE E +++ I KLRKKL G Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSTATG 206 >gi|254466033|ref|ZP_05079444.1| two component transcriptional regulator, winged helix family [Rhodobacterales bacterium Y4I] gi|206686941|gb|EDZ47423.1| two component transcriptional regulator, winged helix family [Rhodobacterales bacterium Y4I] Length = 239 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRMSRI--ETPILILSGADDTDNKIKGFGFGADDYLTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + +TG I V D + E G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSIIKTGKISVNLDAKTVEADGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 +YG DE E +++ I KLRKKL N G Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSNATG 206 >gi|302382325|ref|YP_003818148.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192953|gb|ADL00525.1| two component transcriptional regulator, winged helix family [Brevundimonas subvibrioides ATCC 15264] Length = 237 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 74/148 (50%), Gaps = 3/148 (2%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R P++ +S ++T + F G DD + KP H E++AR A+ RR Sbjct: 60 LEVLRQLRVGKINTPVMILSGSTEIETKVKTFGGGADDYMTKPFHKDELIARTHAVVRRS 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + TG I V DG+ EV G L +E ++LE L +G + K + +Y Sbjct: 120 KGHAQAIIHTGEIAVNLDGKTVEVHGHRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG 206 G DE E +++ I KLRKKL G Sbjct: 180 GGMDEP-ELKIIDVFICKLRKKLATAAG 206 >gi|254524631|ref|ZP_05136686.1| two-component response regulator [Stenotrophomonas sp. SKA14] gi|219722222|gb|EED40747.1| two-component response regulator [Stenotrophomonas sp. SKA14] Length = 223 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 4/165 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G + R +R + V I ++ +L ++ D G DD + KP+ E++AR+ A Sbjct: 57 GDGAGFVATARSLRPNLAV--IMLTAKGTLSDKVEGLDVGADDYLVKPVAIEELMARIRA 114 Query: 115 IYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR + G + + +V+G+ PLPRR+ +L+ L +G+ V ++ + Sbjct: 115 VSRRPSAMVTPSLRLGRLEFDFESLQAQVEGQPLPLPRRQVLVLQALAMRQGRTVTRSAL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +A+YG FD+ ++ N +++HISKLRK L+ + R +GY Sbjct: 175 EAAVYG-FDDEIQSNALDAHISKLRKALQQAGAGVEIHVIRGVGY 218 >gi|226326076|ref|ZP_03801594.1| hypothetical protein COPCOM_03894 [Coprococcus comes ATCC 27758] gi|225205618|gb|EEG87972.1| hypothetical protein COPCOM_03894 [Coprococcus comes ATCC 27758] Length = 209 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 7/164 (4%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R +R ++ ++ +S + ++ DSG +D + KP H +E+ ARV ++ RR Sbjct: 46 MEILRELRKENEETKVLILSARSQIADKVEGLDSGANDYMEKPFHLQELEARVRSLTRRK 105 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N E G +R + R L R+E ILEYL+ N+G+ V++ ++ ++ Sbjct: 106 FIQKNICLECGKLRFDTRERVAYADDNPVALTRKENGILEYLLLNQGRPVSQEELIEHVW 165 Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +V+ + H+S LRKKL+ LG+DP+ +K GY I Sbjct: 166 ---DSSVDSFSGSIRVHMSSLRKKLKAGLGYDPIVNKIGEGYKI 206 >gi|167035223|ref|YP_001670454.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166861711|gb|ABZ00119.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 241 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 106/219 (48%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ G+ G +E E + D++ ++ L G L Sbjct: 19 LLVVEDEALLRHHLYTRLGESGHVVEAVADAEEALYQAGQYHFDLAIVDLGL--PGISGL 76 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL +R+ + P++ ++ + Q ++ +G DD + KP E+ AR+ A+ RR Sbjct: 77 ELITRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 136 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+ + + + + L E RILEYLM + + VAK ++ +Y Sbjct: 137 GFTQSTIAAGPLVLDLNRKQATLDELPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLYP 196 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL GF P+D+ R LGY Sbjct: 197 -GDEERDPNVIEVLVGRLRRKLEGAHGFKPIDTVRGLGY 234 >gi|134293501|ref|YP_001117237.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134136658|gb|ABO57772.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 224 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 60 LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++R E GP+ S R ++ G L RER +LE L+ G+ + K + I+ Sbjct: 120 LGHEHSRIECGPLAYDSVDRSFQLAGAALSLTPRERSVLEVLILRNGRAINKETLSEKIF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LRKKL N G V + R LGY ++ Sbjct: 180 GL-DESVNADAIEIYVYRLRKKLENT-GVAIV-TLRGLGYLLE 219 >gi|15890352|ref|NP_356024.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|15158564|gb|AAK88809.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 224 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 13/223 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK----G 57 +LI+D + D A G G+ ++ +++ + ++ + + +A L+ + G Sbjct: 3 LLLIEDEKEMADALSATLGKQGIVID--HTMRLGDAMELTRQH---LYDAILLDRRLPDG 57 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E + +P++ RA P+I ++ + + D G DD + KP E+LARV A+ R Sbjct: 58 EGLAFIPKLRRAGVDTPIILLTAMNEPEDRIAGLDGGADDYLGKPFLVGELLARVRAVLR 117 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFS 175 R AE R+ D V P LPRRE +L L +GK V ++ + + Sbjct: 118 R-PSGLAPAEIAAGRIVIDPLHLSVTINSLPFDLPRRELLVLVALAKRKGKSVLRSTLEA 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 A+Y ++E ++ N +++HIS+LRK+L + V + R +GY Sbjct: 177 AVYN-YEEEIQSNALDAHISRLRKRLLDASAGVSVHNIRGIGY 218 >gi|295691207|ref|YP_003594900.1| winged helix family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295433110|gb|ADG12282.1| two component transcriptional regulator, winged helix family [Caulobacter segnis ATCC 21756] Length = 230 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 6/168 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R +R ++ VP+I ++ + D+G DD V KP E+ ARV A+ R Sbjct: 62 IEVCRRLRGRAETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMVELTARVRAVMR 121 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R++ ++++R G I + + G+ L E R+L+YLM + G+ ++ Q+ Sbjct: 122 RIRPGLADDRITVGDIVIDRVAHRVKRNGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 A++G D VE V+ HI +LRK L DP+ + R GYS+D + Sbjct: 182 AVWG-SDVYVEARTVDVHIGRLRKALNGSSDGDPIRTVRSAGYSLDLD 228 >gi|83312342|ref|YP_422606.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82947183|dbj|BAE52047.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 225 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 106/210 (50%), Gaps = 6/210 (2%) Query: 16 IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRAHSQ 72 +A F G+ GF F ++A + +A +A ++ G L++ R RA + Sbjct: 12 LAEFISAGLKSAGFVPDVFGTVADATAAFESAAYQAAILDLGLPDGDGLDIVRAQRAKAA 71 Query: 73 -VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130 P++ ++ + + ++G DD + KP E++AR+ AI RR + + G Sbjct: 72 PCPIMVLTARDRVSDRVSGLNAGADDYLLKPFAMEELIARLRAILRRPGAALSVELSLGN 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + GR+ V G++ +PRRE +LE+L+ GK V+K + +YG FD+ V N V Sbjct: 132 LTFDTAGREVRVDGQLVAMPRREMEMLEHLLRRSGKVVSKRSLEEGLYG-FDDDVTPNSV 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E +S+LRK+L+ V + R +GY + Sbjct: 191 EVLVSRLRKRLQQTGAGVTVHTLRGIGYML 220 >gi|295104695|emb|CBL02239.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 225 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 89/164 (54%), Gaps = 7/164 (4%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +R H + ++ +S + ++ D+G +D ++KP H E+ ARV ++ RR Sbjct: 60 MQVLRSLRQHDLETCVLILSARSEISDKVEGLDAGANDYLSKPFHLAELEARVRSLTRRK 119 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G + + R V + L R+E +LEYL+ ++G+ V++ ++ ++ Sbjct: 120 FIQQDVCLCCGRLSFNTRSRVATVDSQTLALTRKESGVLEYLLLHQGRPVSQEELIEHVW 179 Query: 179 GLFDEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +V+ N + HIS LRKKLR LG+DP+ ++ GY I Sbjct: 180 ---DGSVDSFSNSIRVHISALRKKLRAALGYDPIRNRIGEGYEI 220 >gi|254387744|ref|ZP_05002982.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294817993|ref|ZP_06776635.1| Two component transcriptional regulator, winged helix family [Streptomyces clavuligerus ATCC 27064] gi|326446884|ref|ZP_08221618.1| two component transcriptional regulator, winged helix family protein [Streptomyces clavuligerus ATCC 27064] gi|197701469|gb|EDY47281.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294322808|gb|EFG04943.1| Two component transcriptional regulator, winged helix family [Streptomyces clavuligerus ATCC 27064] Length = 226 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 3/132 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP + ++AR+ A+ RR + E G +RV R E G PL Sbjct: 91 LDTGADDYVTKPFSYIALVARLRALVRRGRRERPPVIEIGDLRVDPATRRCERSGTPVPL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 RE +L YL A RG+ VAKT+I ++G F+ V NVVE ++S LR+K+ G Sbjct: 151 TAREFGVLWYLAAQRGEVVAKTEILDHVWGDFEGDV--NVVEVYVSALRRKIDTPFGRRT 208 Query: 210 VDSKRFLGYSID 221 + + R GY ++ Sbjct: 209 IHTVRGAGYRLE 220 >gi|326387977|ref|ZP_08209581.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326207478|gb|EGD58291.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 218 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 89/162 (54%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 ++L R RA P+I ++ S Q ++ ++G DD V KP+ E+LAR+ A++RR Sbjct: 60 MDLLRYWRARRIACPVIILTARGSWQDKVEGLNAGADDFVVKPVRFEELLARLHAVWRRQ 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ E G +R+ + E++GE L R E R+L + + GK +++++I +Y Sbjct: 120 QGAADAWIEKGALRLNPADKKAELEGEELALSRMEFRLLHLFLRHAGKPLSQSEIMDHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 L D + N VE I +LR+ K+G + +++ R GY + Sbjct: 180 DL-DSERQANAVEVLIGRLRR----KIGSERIETLRGFGYRL 216 >gi|24373664|ref|NP_717707.1| DNA-binding response regulator YgiX, putative [Shewanella oneidensis MR-1] gi|24348011|gb|AAN55151.1|AE015651_10 DNA-binding response regulator YgiX, putative [Shewanella oneidensis MR-1] Length = 219 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 14/223 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL---IGKGE 58 +L++D L+ G G+ ++ +S + + L E SAI L G G+ Sbjct: 3 IMLVEDNELLAQGICLSLAKMGMQVDHLSS--YHQALVGIKNETFSAIVLDLGLPDGNGK 60 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +L+ R +P I ++ T L+ D G DD + KP RE+ AR+ AI RR Sbjct: 61 DLLKAWR--SQGVSIPTIVLTANTDFDTKLECLDVGADDYLGKPFDVRELAARIRAIVRR 118 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +N G + + + R+ + + L RRE ++L L + G+ + + Q+ Sbjct: 119 QFGLDHNSLNIGALSIDLNTREVTFRDQNVSLSRREFQLLLELAQSAGRVLTRNQLEQLT 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 YG +DE V N +E HI LRKKL N+L + + R +GY++ Sbjct: 179 YG-WDE-VGSNSIEVHIHHLRKKLANEL----IKTVRGIGYTL 215 >gi|260438896|ref|ZP_05792712.1| phosphate regulon transcriptional regulatory protein PhoB [Butyrivibrio crossotus DSM 2876] gi|292808545|gb|EFF67750.1| phosphate regulon transcriptional regulatory protein PhoB [Butyrivibrio crossotus DSM 2876] Length = 224 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 15/212 (7%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L+ GY + +DG E+ L+ V + A ++ E +I+R Sbjct: 21 LLGAGYTPVLAEDG-----------EKALEIYNTHHVDMVIADIMMPNLDGYEFTKILRK 69 Query: 70 HSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 +Q +P+I +S F +G+DD + KP+ E+L + AI RRLK++ +R T Sbjct: 70 SNQDIPIIMVSAKELPDDRKKGFKAGIDDYLVKPVDEEELLLHIKAIERRLKIAGDRKIT 129 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + + D V GE LP++E ++L L++N G+ + Q+ I+G D Sbjct: 130 IGSVVLDYDSFTVNVNGEEILLPQKEFKLLYLLLSNPGRIYTRIQLMDEIWGT-DTDTGW 188 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 V HI +LRK+ N F+ V S R LGY Sbjct: 189 ETVTVHIGRLRKRFENIKEFEIV-SVRGLGYK 219 >gi|46201698|ref|ZP_00208213.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 225 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 106/222 (47%), Gaps = 30/222 (13%) Query: 9 ALVKDGYIA-LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 AL G++ +FG+ ++ F S ++ + D G G L++ R Sbjct: 19 ALKSAGFVPDVFGNKADAIAAFESATYQAAILDLGLPD---------GDG---LDIIRAQ 66 Query: 68 RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118 RA S P++ ++ + + ++G DD + KP E++AR+ AI RR Sbjct: 67 RAKSAPCPMMVLTARDGVSDRVSGLNAGADDYLLKPFAMEELIARLRAILRRPGAALSVE 126 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L +SN +T GR+ V G + +PRRE +LE+L+ GK V+K + +Y Sbjct: 127 LSLSNLTFDT-------TGREVRVDGTLISMPRREMEMLEHLLRRAGKVVSKRSLEEGLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G FD+ V N VE +S+LRK+L+ V + R +GY + Sbjct: 180 G-FDDDVTPNSVEVLVSRLRKRLQQTGARLTVHTLRGIGYML 220 >gi|292490612|ref|YP_003526051.1| response regulator receiver [Nitrosococcus halophilus Nc4] gi|291579207|gb|ADE13664.1| response regulator receiver [Nitrosococcus halophilus Nc4] Length = 223 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 31/220 (14%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELP 64 R L + G++ D+GV E L FEE EA ++ G L++ Sbjct: 18 RELTQQGFVVDTADNGVDAE---FLGFEE-----------PYEAVILDLGLPQRSGLDVL 63 Query: 65 RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R R H ++VP++ ++ + ++ F G DD ++KP H E+LAR+ A+ RR S Sbjct: 64 RHWRDHDNRVPVLILTARDAWHEKVEGFKCGADDYLSKPFHTEELLARLQALIRR---SQ 120 Query: 124 NRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 NR + S D E Q G + L E R+L Y M + G+ ++K+++ +Y Sbjct: 121 NRPHQSQLTSHSLTLDEERQCVHKDGHLIELTGTEFRLLRYFMLHPGRILSKSRLTEQVY 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L D + NV+E ++++LRK K+G D + ++R GY Sbjct: 181 AL-DADKDSNVMEVYVNRLRK----KVGSDLIKTRRGQGY 215 >gi|149185450|ref|ZP_01863766.1| DNA-binding response regulator CtrA [Erythrobacter sp. SD-21] gi|148830670|gb|EDL49105.1| DNA-binding response regulator CtrA [Erythrobacter sp. SD-21] Length = 231 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 2/145 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L ++ A Q P++ +S + + + F G DD V KP H E++AR+ A+ RR K Sbjct: 63 LKKLRVAKVQTPVLILSGVAEMDSKIRSFGFGADDYVTKPFHREELIARIHAVVRRSKGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + TG + V D + EV G L +E +LE L +G + K + +YG Sbjct: 123 SQSIIRTGKLAVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYGGM 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG 206 DE E +++ I KLRKKL + G Sbjct: 183 DEP-ELKIIDVFICKLRKKLSHACG 206 >gi|159184556|ref|NP_353994.2| two component response regulator [Agrobacterium tumefaciens str. C58] gi|159139861|gb|AAK86779.2| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 223 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H E+LARV A+ RR +++ GP+R+ + V G L Sbjct: 91 IDAGADDYVTKPFHVEEVLARVRALIRRAAGHASSELVCGPVRLDTKSSKATVNGTTLKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V++T++ +Y FD + N +E + +LRK K+G D Sbjct: 151 TSHEFRLLSYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KIGVD 204 Query: 209 PVDSKRFLGYSI 220 +++ R LGY + Sbjct: 205 LIETIRGLGYRM 216 >gi|255526633|ref|ZP_05393539.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186093|ref|ZP_06854498.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509666|gb|EET86000.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049361|gb|EFG88790.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 227 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 59/197 (29%), Positives = 102/197 (51%), Gaps = 19/197 (9%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+GY G+ +LE F+S+EF + D+ +GE E+ +IIR Sbjct: 21 LEKEGYEVYTSTTGLKALELFDSIEFNLIILDLMLPDI---------QGE---EICKIIR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126 S V + ++ +L+ ++ ++G D+ + KP RE++ARV +++RRL VSNN + Sbjct: 69 NKSDVYIFMVTAKSALEDRIEGLNTGADEYLVKPFSPRELVARVNSLFRRL-VSNNSSIL 127 Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + G + + D R +V+G L E IL L N+GK + + Q+ ++G+ E Sbjct: 128 CFDNGNLEIHKDSRIVKVKGLEVSLTPNEFDILYSLAMNKGKVLTREQLIDRVFGMDFEG 187 Query: 185 VEENVVESHISKLRKKL 201 + V+ HI +RKK+ Sbjct: 188 FDR-TVDVHIKNIRKKI 203 >gi|149919419|ref|ZP_01907900.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] gi|149819725|gb|EDM79150.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] Length = 223 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 67/220 (30%), Positives = 106/220 (48%), Gaps = 13/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGKGEKV 60 +LIDD A + + G +GV LE ++++ L+ A E DV ++ + G Sbjct: 6 LLIDDDARLFELLSGYLGQNGVELE--HAVDGAAGLRVLANESHDVVLLDGMM--PGMDG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LE+ R +RA S +P++ ++ + + G DD + KP RE+LAR+ A+ RR+ Sbjct: 62 LEVLRRLRARSAIPVLMLTARGDEADRVVGLELGADDYIAKPFSSRELLARLRAVLRRMH 121 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +V R + R+ V+GE L E +L L+ G+ V + + Sbjct: 122 PEVGRERLSANGVVALIGTREVRVEGEAASLTGLEFDLLVALLRRAGRVVTRAALLHE-A 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G D V E V+ HISKLRK KLG D + + R +GY Sbjct: 181 GRDDTVVSERTVDVHISKLRK----KLGGDKIKTVRGVGY 216 >gi|224988879|ref|YP_002643566.1| two component sensory transduction protein [Mycobacterium bovis BCG str. Tokyo 172] gi|224771992|dbj|BAH24798.1| two component sensory transduction protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 227 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 18/208 (8%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + + + A D + + L+ G ++ + +RA S VP+I ++ S Sbjct: 24 EGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138 + + G DD V KP RE++AR+ A+ RR ++S+ E+GP+R+ + Sbjct: 84 EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERH 143 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 V G+ LP +E +LEYLM N G+ + + Q+ ++G D + ++ H+ Sbjct: 144 VVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 198 Query: 199 KKLRNKLGFDPVDSKRF-----LGYSID 221 K+LR+K+ DP + LGY ++ Sbjct: 199 KRLRSKIEADPANPVHLVTVCGLGYKLE 226 >gi|254246631|ref|ZP_04939952.1| Response regulator receiver [Burkholderia cenocepacia PC184] gi|124871407|gb|EAY63123.1| Response regulator receiver [Burkholderia cenocepacia PC184] Length = 225 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 7/219 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D A + + L + +++ E + + + R D ++ L G G++V Sbjct: 3 LLLVEDNAELAHWIVNLLRGEDFAVDSVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L R+ R + VP++ ++ + S+ +D F +G DD V KP RE++AR+ A+ RR Sbjct: 63 L--ARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V + G + R+ V L RRE ILE LM + K V+K ++ +++ Sbjct: 121 GVGTTQLVCGDLVYAFGTREFRCGDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L DE + ++ +I +LRK L + + R LGY Sbjct: 181 LDDEP-SADAIDIYIHRLRKHLAGSTA--EIITLRGLGY 216 >gi|94497501|ref|ZP_01304071.1| two component transcriptional regulator, winged helix family protein [Sphingomonas sp. SKA58] gi|94423132|gb|EAT08163.1| two component transcriptional regulator, winged helix family protein [Sphingomonas sp. SKA58] Length = 235 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 2/147 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L ++ A Q P++ +S + + + F G DD V KP H E++AR+ A+ RR K Sbjct: 63 LKKLRAAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSKGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + TG + V D + EV G L +E +LE L +G + K + +YG Sbjct: 123 SQSVIRTGKLSVNLDAKTVEVDGNRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYGGM 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFD 208 DE E +++ I KLRKKL G D Sbjct: 183 DEP-ELKIIDVFICKLRKKLALACGGD 208 >gi|218437945|ref|YP_002376274.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218170673|gb|ACK69406.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 238 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 114/225 (50%), Gaps = 19/225 (8%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 I R L ++ Y+ + DG + +N LE +EW++ S AI +L+ K + Sbjct: 15 IIQRMLNRENYLVDWVQDGAT--AWNYLE-QEWIEYSV-----AIFDWLLPKISGLELCQ 66 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R+ + + +P++ ++ +Q + D+G DD + KP E+LAR+ A+ RR L + Sbjct: 67 RLRQQNCSLPVLILTAKSDIQDMVTGLDAGADDYLIKPFVKAELLARIRALQRRALHIQP 126 Query: 124 NRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + GP+ VF+ + + + + PL E R+LEY M + + + + Q+ + Sbjct: 127 SQLQIGPLTLDYAKSSVFTS--NSQGKPQTIPLTANEFRLLEYFMKHPNQTLTRDQLLAQ 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ D+A NVV + I LR+KL + D +++ GY ++ Sbjct: 185 LWET-DDAPISNVVSARIRLLRRKLADYGCKDLIETVHGFGYRLN 228 >gi|326386598|ref|ZP_08208220.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326208913|gb|EGD59708.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 233 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 2/145 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L ++ A Q P++ +S + + + F G DD V KP H E++AR+ A+ RR K Sbjct: 63 LKKLRVAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSKGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + TG + V D + EV G L +E +LE L +G + K + +YG Sbjct: 123 SQSVIRTGKLSVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYGGM 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG 206 DE E +++ I KLRKKL + G Sbjct: 183 DEP-ELKIIDVFICKLRKKLAHACG 206 >gi|87198328|ref|YP_495585.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87134009|gb|ABD24751.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 233 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL+ R+ A Q P++ +S + + + F G DD V KP H E++AR+ A+ Sbjct: 59 GYDVLKKLRV--AKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELIARIHAVV 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + TG + V D + EV G L +E +LE L +G + K + Sbjct: 117 RRSKGHSQSVIRTGKLSVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 +YG DE E +++ I KLRKKL + G Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLAHACG 206 >gi|159044057|ref|YP_001532851.1| cell cycle transcriptional regulator ctrA [Dinoroseobacter shibae DFL 12] gi|157911817|gb|ABV93250.1| cell cycle transcriptional regulator ctrA [Dinoroseobacter shibae DFL 12] Length = 237 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/151 (34%), Positives = 77/151 (50%), Gaps = 4/151 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S ++ + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQIRLARI--ETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + +TG I V D + EV G L +E +ILE L +G + K + Sbjct: 117 RRSKGHSQSVIKTGEILVNLDAKTVEVDGMQVHLTGKEYQILELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 +YG DE E +++ I KLRKKL G Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSQATG 206 >gi|206561833|ref|YP_002232598.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|198037875|emb|CAR53819.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 225 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 7/219 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D A + + L + +++ E + + + R D ++ L G G++V Sbjct: 3 LLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L R+ R + VP++ ++ + S+ +D F +G DD V KP RE++AR+ A+ RR Sbjct: 63 L--ARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V + G + R+ V L RRE ILE LM + K V+K ++ +++ Sbjct: 121 GVGTTQLVCGDLVYAFGTREFRCGDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L DE + ++ +I +LRK L + + R LGY Sbjct: 181 LDDEP-SADAIDIYIHRLRKHLAGSTA--EIITLRGLGY 216 >gi|107021602|ref|YP_619929.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116688054|ref|YP_833677.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105891791|gb|ABF74956.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116646143|gb|ABK06784.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] Length = 225 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 7/219 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D A + + L + +++ E + + + R D ++ L G G++V Sbjct: 3 LLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L R+ R + VP++ ++ + S+ +D F +G DD V KP RE++AR+ A+ RR Sbjct: 63 L--ARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V + G + R+ V L RRE ILE LM + K V+K ++ +++ Sbjct: 121 GVGTTQLVCGDLVYAFGTREFRCGDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L DE + ++ +I +LRK L + + R LGY Sbjct: 181 LDDEP-SADAIDIYIHRLRKHLAGSTA--EIITLRGLGY 216 >gi|296394042|ref|YP_003658926.1| transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181189|gb|ADG98095.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 228 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 27/223 (12%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ + DG + E+ +S A D+ ++ L G G ++ + +RA Sbjct: 21 LRKEGFETVIAGDGPA-------ALTEFDRSGA--DIVLLDLMLPGMGGN--DVCKQLRA 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--- 126 S VP+I ++ S + + G DD V KP RE+ AR+ A+ RR + +++ Sbjct: 70 RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLRRGQEADSETSAE 129 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E GPI++ D V + LP +E +LEYLM NRG+ + + Q+ ++G D Sbjct: 130 GVLEAGPIKLDVDRHLVSVHSKHVTLPLKEFDLLEYLMRNRGRVLTRGQLIDRVWG-ADY 188 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221 + ++ H+ +LR K+ + DP R LGY ++ Sbjct: 189 VGDTKTLDVHVKRLRSKIED----DPAKPDRLVTVRGLGYKLE 227 >gi|226947464|ref|YP_002802555.1| regulatory protein VanR [Clostridium botulinum A2 str. Kyoto] gi|226842915|gb|ACO85581.1| regulatory protein VanR [Clostridium botulinum A2 str. Kyoto] Length = 233 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 12/164 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125 IR ++ P+I +S S +T L+ + G DD + KP E++ARV + RR L+ S ++ Sbjct: 70 IRKITKAPIIIVSAKTSKKTKLELLEKGADDFICKPFDPDEVVARVNSNLRRYLEFSTDK 129 Query: 126 AETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G I ++ D ++ +V + L RE +LE L+ N K +K IF +I+G Sbjct: 130 EKKGNILIYKDITLNKESKEVKVGQTIVILTAREFAVLELLLNNPNKVYSKANIFESIWG 189 Query: 180 LFDEAV-EENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSI 220 +E + ++N V H+S++R KL N G D +++ +GY + Sbjct: 190 --EEFLGDDNTVNVHVSRMRSKLSRANNNGEDYIETVWAMGYRL 231 >gi|170731404|ref|YP_001763351.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169814646|gb|ACA89229.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 225 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 7/219 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D A + + L + +++ E + + + R D ++ L G G++V Sbjct: 3 LLLVEDNAELAHWIVNLLRGEDFAVDSVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R+ R + VP++ ++ + S+ +D F +G DD V KP RE++AR+ A+ RR Sbjct: 63 L--ARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V + G + R+ V L RRE ILE LM + K V+K ++ +++ Sbjct: 121 GVGTTQLVCGDLVYAFGTREFRCGDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L DE + ++ +I +LRK L + + R LGY Sbjct: 181 LDDEP-SADAIDIYIHRLRKHLAGSTA--EIITLRGLGY 216 >gi|110633248|ref|YP_673456.1| two component transcriptional regulator [Mesorhizobium sp. BNC1] gi|110284232|gb|ABG62291.1| two component transcriptional regulator, winged helix family [Chelativorans sp. BNC1] Length = 222 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 8/160 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L R R ++P++ ++ + D+G DD V KP H E+LARV A+ RR Sbjct: 63 LERWRRDGRKMPVLILTARDRWSDKVAGIDAGADDYVTKPFHMEEVLARVRALIRRAAGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 +++ GP+R+ + ++ G L E R+L YLM ++G V++T++ +Y Sbjct: 123 ASSELYCGPLRLDTKASKADMDGVPLKLTSHEYRMLAYLMHHKGSVVSRTELVEHLYDQD 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + N +E + +LRK KLG D +++ R +GY + Sbjct: 183 FDR--DSNTIEVFVGRLRK----KLGVDLIETVRGMGYRM 216 >gi|296283968|ref|ZP_06861966.1| phosphate regulon response regulator [Citromicrobium bathyomarinum JL354] Length = 229 Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 90/171 (52%), Gaps = 6/171 (3%) Query: 56 KGEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 +G +E+ R +R + VP+I ++ + + ++G DD + KP RE+LARV Sbjct: 58 EGTSGIEVCRRLRRDKGTAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARV 117 Query: 113 AAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 AA+ RR++ ++ E G IR+ E +G L E R+L++ M + G+ ++ Sbjct: 118 AAVMRRIRPALAGETIEVGDIRLDPVAHKVERRGRNLQLGPTEYRLLKFFMESPGRVFSR 177 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 Q+ ++G + +E V+ HI +LRK L + DP+ + R GY+++ Sbjct: 178 GQLLDGVWGTGSD-IELRTVDVHIRRLRKALELEGASDPIRTVRSAGYALE 227 >gi|257459560|ref|ZP_05624669.1| transcriptional regulatory protein QseB [Campylobacter gracilis RM3268] gi|257442985|gb|EEV18119.1| transcriptional regulatory protein QseB [Campylobacter gracilis RM3268] Length = 220 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 67/216 (31%), Positives = 105/216 (48%), Gaps = 18/216 (8%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRI 66 + L KDGY + G +LEF + A+ D ++A + + G E + Sbjct: 18 KCLKKDGYSV-----DCAFCGKEALEFLD----VAKYDAIVLDAMMPVMDG---FEFLKA 65 Query: 67 IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NN 124 RA P++ ++ + + + D G DD + KP RE+LAR+ AI RR + +N Sbjct: 66 ARARGLGTPVLFLTARDAKEDIIAGLDLGADDYMVKPFDFRELLARLRAIIRRKNATADN 125 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 +R+ + GEV L +E RILE LM NRG +++ QI +I+ DEA Sbjct: 126 EIIIRQVRLNLSKKSVVCAGEVVELTGKEYRILELLMLNRGAILSREQIGESIWDFSDEA 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NV++ I +RKKL D +++KR LGY + Sbjct: 186 -SSNVIDVLIKNIRKKLGEH--GDIIETKRGLGYVV 218 >gi|325000981|ref|ZP_08122093.1| two component transcriptional regulator, winged helix family protein [Pseudonocardia sp. P1] Length = 229 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 17/181 (9%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G ++ + +R+ S VP+I ++ S + + G DD V KP RE++ARV Sbjct: 53 LMLPGMSGTDVCKALRSRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARV 112 Query: 113 AAIYRR-------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 A+ RR + N E GP+R+ + V G+ PLP +E +LEYL+ N G Sbjct: 113 RAVLRRGGEATGETESGNGILEAGPVRMDVERHVVSVNGDDVPLPLKEFDLLEYLLRNVG 172 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSI 220 + + + Q+ ++G D + ++ H+ +LR K+ + DP K R LGY Sbjct: 173 RVLTRAQLIDRVWG-ADYVGDTKTLDVHVKRLRSKVED----DPSTPKHLVTVRGLGYKF 227 Query: 221 D 221 D Sbjct: 228 D 228 >gi|326202666|ref|ZP_08192534.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987250|gb|EGD48078.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 223 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 87/163 (53%), Gaps = 4/163 (2%) Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + +R S P++ ++ L+ F +G DD + KPI+ +E++ RV A+ RR K Sbjct: 63 ELTKELRDASYAQPILMVTAKDQLEDMEQGFRAGTDDYMIKPINLKEMILRVNALLRRSK 122 Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++N R G + + G+ F +P +E +L L++N K + +I I+G Sbjct: 123 IANEKRLIVGKTVLDYSQMTIYIGGQEFEIPPKEFYLLFLLLSNPNKIFTRLEILDEIWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + D V+E V+SHI KLR+K N + F+ + + R LGY + Sbjct: 183 M-DSEVDERTVDSHIKKLRRKFENCMDFEII-TIRGLGYKAKY 223 >gi|332715573|ref|YP_004443039.1| two component response regulator [Agrobacterium sp. H13-3] gi|325062258|gb|ADY65948.1| two component response regulator [Agrobacterium sp. H13-3] Length = 224 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 114/222 (51%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK----G 57 +LI+D + D G G+ ++ +++ + ++ AR+ V +A L+ + G Sbjct: 3 LLLIEDEKEMADALSTTLGKQGIVID--HTMRLGDAMEL-ARQHV--YDAILLDRRLPDG 57 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E + +P++ RA P+I ++ + ++ + G DD + KP E+LAR+ A+ R Sbjct: 58 EGLTFIPKLRRAGIDTPIILLTAMNEPEERIEGLNGGADDYLGKPFLVGELLARLRAVLR 117 Query: 118 R-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R ++ ++ G I + + F LPRRE +L L +GK V ++ + +A Sbjct: 118 RPASIAPSQIAAGRIVIDPLHLSVTINSLPFDLPRRELMVLITLAKRKGKSVLRSTLEAA 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y ++E ++ N +++HIS+LRK+L + V + R +GY Sbjct: 178 VYN-YEEEIQSNALDAHISRLRKRLLDASAGVSVHNIRGIGY 218 >gi|296445613|ref|ZP_06887568.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296256858|gb|EFH03930.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 224 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 83/164 (50%), Gaps = 10/164 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VLE R +A +P++ ++ + FD+G DD V KP H E+LAR+ A+ Sbjct: 59 GVSVLEQWR--KAGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEELLARMRALL 116 Query: 117 RRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + + GP+R+ + V G L E R+L YLM + G+ V++ +I Sbjct: 117 RRAAGHATSEIVCGPVRLDTKAGRVVVDGNAVKLTSHEYRLLAYLMHHNGRVVSRGEIVE 176 Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y FD + N VE + +LRK KLG D + + R LGY Sbjct: 177 HLYDQDFDR--DSNTVEVFVGRLRK----KLGVDVIQTVRGLGY 214 >gi|313895068|ref|ZP_07828625.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430] gi|320529740|ref|ZP_08030818.1| response regulator receiver domain protein [Selenomonas artemidis F0399] gi|312975963|gb|EFR41421.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430] gi|320137979|gb|EFW29883.1| response regulator receiver domain protein [Selenomonas artemidis F0399] Length = 228 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 88/164 (53%), Gaps = 5/164 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R S VP+I ++ +++ ++ D G DD + KP E++AR+ RR Sbjct: 64 IEICRRVREISNVPIIMLTARDAVEDRVEGLDIGADDYMTKPFAVPELIARLNNALRRRD 123 Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ ++R + +F + +V GE+ L +RE +LEYL+ N+ + + QI Sbjct: 124 LAEGDPSDRLTVKNLVMFLSRYEVQVDGEIVALTKREYDLLEYLLRNKRTVLTRDQILQE 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD E NVV+ +I LR KL ++ + + R +GY + Sbjct: 184 VWG-FDYTGETNVVDVYIRYLRAKLDDRFHQKYIYTVRGVGYVV 226 >gi|85375673|ref|YP_459735.1| DNA-binding response regulator CtrA [Erythrobacter litoralis HTCC2594] gi|84788756|gb|ABC64938.1| DNA-binding response regulator CtrA [Erythrobacter litoralis HTCC2594] Length = 231 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 2/145 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L ++ A Q P++ +S + + + F G DD V KP H E++AR+ A+ RR K Sbjct: 63 LKKLRVAKVQTPVLILSGIAEMDSKIRSFGFGADDYVTKPFHREELVARIHAVVRRSKGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + TG + V D + EV G L +E +LE L +G + K + +YG Sbjct: 123 SQSIIRTGKLAVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYGGM 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG 206 DE E +++ I KLRKKL + G Sbjct: 183 DEP-ELKIIDVFICKLRKKLSHACG 206 >gi|255261349|ref|ZP_05340691.1| cell cycle transcriptional regulator CtrA [Thalassiobium sp. R2A62] gi|255103684|gb|EET46358.1| cell cycle transcriptional regulator CtrA [Thalassiobium sp. R2A62] Length = 238 Score = 74.7 bits (182), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 4/151 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S + L F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRLARI--ETPILILSGSDDTENKLKGFGYGADDYMTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + +TG + V D + EV G+ L +E +++E L +G + K + Sbjct: 117 RRSKGHSQSIIKTGRVMVNLDAKTVEVGGKTVHLTGKEYQMIELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 +YG DE E +++ I KLRKKL G Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLATATG 206 >gi|126728826|ref|ZP_01744641.1| two component response regulator [Sagittula stellata E-37] gi|126710756|gb|EBA09807.1| two component response regulator [Sagittula stellata E-37] Length = 249 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 4/157 (2%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRA 126 R + P+I ++ + D+G DD + KP E+ AR+ A+ RR + R Sbjct: 94 RRNDGTPVILLTARSETAERVAGLDAGADDYLTKPFEMDELEARLRAMARRKNIEFAARD 153 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + GP+ GR + +PRRE LE L+ RG+ V+K Q+ S +YG+ +A E Sbjct: 154 KLGPLVFDRTGRQLMQDEQALDIPRREIATLECLLERRGRLVSKAQLISHVYGIGSDA-E 212 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ +E H+S+LRK+L G + + R LGY ++ + Sbjct: 213 DSAIEPHVSRLRKRL-EPFGIR-IKTARGLGYMLEVD 247 >gi|218462225|ref|ZP_03502316.1| two-component response regulator protein [Rhizobium etli Kim 5] Length = 223 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H E+LAR+ A+ RR +++ GP+R+ + V G L Sbjct: 91 IDAGADDYVTKPFHVEEVLARIRALIRRAAGHASSEIICGPVRLDTKSSKATVNGTPLKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V++T++ +Y FD + N +E + +LRK K+G D Sbjct: 151 TSHEYRLLAYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KMGVD 204 Query: 209 PVDSKRFLGYSI 220 +++ R LGY I Sbjct: 205 LIETVRGLGYRI 216 >gi|160943091|ref|ZP_02090328.1| hypothetical protein FAEPRAM212_00570 [Faecalibacterium prausnitzii M21/2] gi|158445560|gb|EDP22563.1| hypothetical protein FAEPRAM212_00570 [Faecalibacterium prausnitzii M21/2] Length = 262 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 89/164 (54%), Gaps = 7/164 (4%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +R H + ++ +S + ++ D+G +D ++KP H E+ ARV ++ RR Sbjct: 97 MQVLRSLRQHDLETCVLILSARSEIADKVEGLDAGANDYLSKPFHLAELEARVRSLTRRK 156 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G + + R V + L R+E +LEYL+ ++G+ V++ ++ ++ Sbjct: 157 FIQQDVCLCCGRLSFNTRSRVATVDSQTLALTRKESGVLEYLLLHQGRPVSQEELIEHVW 216 Query: 179 GLFDEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +V+ N + HIS LRKKLR LG+DP+ ++ GY I Sbjct: 217 ---DGSVDSFSNSIRVHISALRKKLRAALGYDPIRNRIGEGYEI 257 >gi|299134457|ref|ZP_07027650.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298591204|gb|EFI51406.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 220 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 109/225 (48%), Gaps = 21/225 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D ++ +G G G +L+ ++ + + D ++ L G G Sbjct: 3 ILIVEDDPVISNGLKVGLGMFGATLDVVSTCADGRAAAALSEFDALVLDVMLPDGSG--- 59 Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+L +RA + P++ ++ + + DSG DD + KP E+ ARV AI RR Sbjct: 60 LDLLTELRAGGDRTPVLMLTALDEIADRIKGLDSGADDYIGKPFDLDELAARVRAICRR- 118 Query: 120 KVSNNRAETGPIRVFSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RA P F+ DP V E PL RRE IL LM++ G+ ++K +I Sbjct: 119 --QTGRAS--PCLTFNGLTLDPAQMTVTVNDETNPLSRREFSILSALMSHPGRVMSKNEI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 S +YG + E +E N VE HI KLR K+G + +++ R +GY Sbjct: 175 ESRLYG-WQEEIESNTVEVHI----HKLRTKVGREKIETIRGIGY 214 >gi|299537140|ref|ZP_07050443.1| response regulator ArlR [Lysinibacillus fusiformis ZC1] gi|298727381|gb|EFI67953.1| response regulator ArlR [Lysinibacillus fusiformis ZC1] Length = 224 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 86/161 (53%), Gaps = 5/161 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR SQVP+I ++ ++ + D+G DD + KP E+LAR+ I RR+ Sbjct: 62 IEICRRIRTQSQVPIILLTARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRVT 121 Query: 121 VSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +E+ +R + + VQG L + E +L+ L+ ++ + + I +++ Sbjct: 122 PEQTNSESLCLRDIEIDVAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +G +D +E NVV+ +I LR KL + D +++ R +GY Sbjct: 182 WG-YDTDIETNVVDVYIRHLRTKLPGAMN-DYIETVRGVGY 220 >gi|326692942|ref|ZP_08229947.1| two-component system regulator [Leuconostoc argentinum KCTC 3773] Length = 229 Score = 74.7 bits (182), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 88/169 (52%), Gaps = 4/169 (2%) Query: 53 LIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L+ GE LE+ + +R + + P++ ++ SL ++ F+ G DD + KP + E+L R Sbjct: 55 LMLPGENGLEVIKHLREKNIETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLLR 114 Query: 112 VAAIYRRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 V A+ RR V +N G + + + R +V G+ L +E IL YL N+ V Sbjct: 115 VKALLRRAGVYSEDNTIAVGDVLINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIVT 174 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + QIF ++G+ D NVV +++ LR+KL D + + R +G+ Sbjct: 175 RDQIFDRVWGI-DSDTTINVVNIYLNNLRRKLEAVGQHDLIKTLRNIGF 222 >gi|30249380|ref|NP_841450.1| response regulator PhoP [Nitrosomonas europaea ATCC 19718] gi|30180699|emb|CAD85320.1| possible phoP; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Nitrosomonas europaea ATCC 19718] Length = 229 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 94/184 (51%), Gaps = 5/184 (2%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGV 95 +L + R D + I+ L GK LE+ + +R S +P++ ++ S Q + + G Sbjct: 38 FLATEYRPDAAIIDIGLPGKSG--LEIIKALRERGSLLPILILTARSSWQDKVQGLEMGA 95 Query: 96 DDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154 DD + KP E+ ARV A+ RR + + + GPI V + V G L E Sbjct: 96 DDYLTKPFQMEELQARVRALLRRAVGIPQTLLKCGPIAVDVTAQSVSVDGANIELTSFEY 155 Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214 R+LE L+ +RG+ ++K + A+Y +E + NV+E I +LR+KL + P+++ R Sbjct: 156 RLLEELVCHRGEILSKESLADALYP-HNEDRDSNVLEVMIGRLRRKLDPEGTLKPIETMR 214 Query: 215 FLGY 218 GY Sbjct: 215 GRGY 218 >gi|269215547|ref|ZP_06159401.1| DNA-binding response regulator DltR [Slackia exigua ATCC 700122] gi|269131034|gb|EEZ62109.1| DNA-binding response regulator DltR [Slackia exigua ATCC 700122] Length = 230 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 64/216 (29%), Positives = 108/216 (50%), Gaps = 14/216 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66 R L ++GY+ DG +G++ SS D+ ++ L K G +V+E R Sbjct: 18 RILNENGYVTDVVHDG--QDGYD-------YASSGIYDIVILDVMLPRKNGCRVVEELR- 67 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125 RA P++ ++ + ++ DSG DD + KP E+LA + A+ RR +V R Sbjct: 68 -RARIDTPVLMLTARSEIPDKIEGLDSGADDYMTKPFSPAELLAHLRALTRRQGQVVFER 126 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E G + + D RD G+ L +E + L +N G+ V+K + S ++G+ AV Sbjct: 127 IEAGDLSLNIDSRDLSCNGKSIALSFKEFELARILFSNPGQIVSKDTLISKVWGVESTAV 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + N VE+++S LRKK+R +D+ R GY ++ Sbjct: 187 DNN-VEAYVSFLRKKIRFLGSGVSIDTIRKAGYRVN 221 >gi|145220688|ref|YP_001131366.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145213174|gb|ABP42578.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] Length = 228 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 16/166 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LK 120 +R+ S VP+I ++ S + + G DD V KP RE++AR+ A+ RR L Sbjct: 67 LRSRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADADDLG 126 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V++ E GP+R+ + V G LP +E +LEYLM N G+ + + Q+ ++G Sbjct: 127 VADGVLEAGPVRMDVERHVVSVNGAPITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG- 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221 D + ++ H+ K+LR+K+ DP + + R LGY ++ Sbjct: 186 ADYVGDTKTLDVHV----KRLRSKIESDPANPVHLVTVRGLGYKLE 227 >gi|126729668|ref|ZP_01745481.1| DNA-binding response regulator CtrA [Sagittula stellata E-37] gi|126709787|gb|EBA08840.1| DNA-binding response regulator CtrA [Sagittula stellata E-37] Length = 238 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 4/153 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ ++ Q+ + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRVARIDT--PILILTGEDDTQSKIKGFGFGADDYMTKPFHRDELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + TG + V D + EV G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSVIRTGKVSVNLDAKTVEVTGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 +YG DE E +++ I KLRKKL G D Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSEATGDD 208 >gi|218246382|ref|YP_002371753.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|218166860|gb|ACK65597.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] Length = 237 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 114/224 (50%), Gaps = 17/224 (7%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 I R L ++ Y+ + DG + +N LE +EW++ S AI +L+ K LEL Sbjct: 15 IIQRMLNRENYLVDWVQDGAT--AWNYLE-QEWIEYSV-----AIFDWLLPKISG-LELC 65 Query: 65 RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVS 122 + +R +P++ ++ +Q + D+G DD ++KP E+LAR+ A+ RR L + Sbjct: 66 QKLRQQGYSLPVLMLTAKSDIQDMVTGLDAGADDYLSKPFIKAELLARIRALQRRALHIQ 125 Query: 123 NNRAETGPIRV---FSDGRDPEVQGEV--FPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N+ + G + + S P QG+ PL E R+LEY M + + + + Q+ + + Sbjct: 126 PNQLQIGLLTLDYAKSSVFTPNAQGQPQNIPLTANEFRLLEYFMKHPNQTLTRDQLLAQL 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D+A NVV + I LR+KL + D +++ GY ++ Sbjct: 186 WET-DDAPISNVVSARIRLLRRKLADYGCKDLIETVHGFGYRLN 228 >gi|167585029|ref|ZP_02377417.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 225 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 107/219 (48%), Gaps = 7/219 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D A + + L + +++ E + + + R D ++ L G G++V Sbjct: 3 LLLVEDNAELAHWIVNLLRGEDFAVDSVGDGERADAVLKTERYDAVLLDMRLPGISGKEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L R+ R + VP++ ++ + S+ +D F +G DD V KP RE++AR+ A+ RR Sbjct: 63 L--GRLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V R G + R+ L RRE ILE LM + K V+K ++ +++ Sbjct: 121 GVGATRLVCGDLVYAFGTREFRCHDAPLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L DE + ++ +I +LRK L L + + R LGY Sbjct: 181 LDDEP-SADAIDIYIHRLRKHL--ALSTAEIITLRGLGY 216 >gi|266623649|ref|ZP_06116584.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] gi|288864541|gb|EFC96839.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] Length = 233 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 79/144 (54%), Gaps = 2/144 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E R IR +SQVP+I ++ + L F+ GVD+ ++KP + ++ARV AI RR Sbjct: 73 ETCRTIRKYSQVPIIMLTARSEERDELQGFNLGVDEYISKPFSPKILVARVEAILRRSNA 132 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 VS++ E G IR+ + G+ L +E +L Y + N+G +++ +I + ++ Sbjct: 133 VSSDLIEIGGIRIDKAAHQVTIDGQNIDLSYKEFELLTYFVENQGIALSREKILNNVWN- 191 Query: 181 FDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR K+ K Sbjct: 192 YDYFGDARTIDTHVKKLRSKMGEK 215 >gi|115350078|ref|YP_771917.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115280066|gb|ABI85583.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 225 Score = 74.7 bits (182), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 108/219 (49%), Gaps = 7/219 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D A + + L + +++ E + + + R D ++ L G G++V Sbjct: 3 LLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R+ R + VP++ ++ + S+ +D F +G DD V KP RE++AR+ A+ RR Sbjct: 63 L--ARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V+ + G + R+ V L RRE ILE LM + K V+K ++ +++ Sbjct: 121 GVATTQLVCGDLVYAFGTREFRCGDAVLALRRREHVILETLMLQQNKTVSKARLMDSVFA 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L DE + ++ +I +LRK L + + R LGY Sbjct: 181 LDDEP-SADAIDIYIHRLRKHLAGST--TEIITLRGLGY 216 >gi|289547930|ref|YP_003472918.1| transcriptional regulator [Thermocrinis albus DSM 14484] gi|289181547|gb|ADC88791.1| two component transcriptional regulator, winged helix family [Thermocrinis albus DSM 14484] Length = 214 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 109/201 (54%), Gaps = 8/201 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D L+ + ++G +++ ++ E ++ L+ S DV ++ + GE+V Sbjct: 4 LLVEDDHLLGESVKEFLKENGCTVDWVWDPREVKDLLEVSIY-DVIILDLMMPHLSGEEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ I + +VP++ ++ L+ F+ G DD + KP E+L R+ A+ RR K Sbjct: 63 LK--EIRKKDQKVPVLVLTAKGRLEDKKVCFNLGADDYLTKPFEPEELLLRLKALVRR-K 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + E G ++V + + +V L R+E +L+YL+ NRG+ V+ ++ + ++G Sbjct: 120 LPSKQVEIGRLKVDLEEEKVWLDSKVLLLSRKEWLLLKYLVENRGRCVSSEELLNYVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKL 201 DE V E VV +HI LRK L Sbjct: 179 -DEPVGEEVVRAHIKNLRKIL 198 >gi|83951898|ref|ZP_00960630.1| DNA-binding response regulator CtrA [Roseovarius nubinhibens ISM] gi|83836904|gb|EAP76201.1| DNA-binding response regulator CtrA [Roseovarius nubinhibens ISM] Length = 233 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 4/153 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S + F G DD + KP H E++AR+ AI Sbjct: 54 GHEVLRQLRLARI--ETPILILSGSDDTDNKIKGFGFGADDYLTKPFHRDELVARIHAII 111 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + TG I V D + +V G+ L +E ++LE L +G + K + Sbjct: 112 RRSKGHSQSVIRTGEINVNLDAKTVDVDGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLN 171 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 +YG DE E +++ I KLRKKL G D Sbjct: 172 HLYGGMDEP-ELKIIDVFICKLRKKLSQATGGD 203 >gi|269123509|ref|YP_003306086.1| two component transcriptional regulator, winged helix family [Streptobacillus moniliformis DSM 12112] gi|268314835|gb|ACZ01209.1| two component transcriptional regulator, winged helix family [Streptobacillus moniliformis DSM 12112] Length = 224 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR S VP+I ++ + + FD G DD + KP + E++ARV A+ RR Sbjct: 62 FEVCKRIREDSDVPIIFLTAKDQITDKVISFDYGADDYITKPFSNEELIARVKALLRRST 121 Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + N + E +R+ + GE+ L ++E +L+YL+ N+G + + I + Sbjct: 122 LKNKKKEDFIFEDLRISYTAHEVYRGGELIQLSKKEFELLDYLVLNKGIVLGRDSILEEV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +G FD+ N+++ +I LR K+ + +KR +G+ Sbjct: 182 WG-FDQIGNNNILDLYIKYLRDKIDKPYLRKFIQTKRGIGF 221 >gi|254437616|ref|ZP_05051110.1| response regulator receiver domain protein [Octadecabacter antarcticus 307] gi|198253062|gb|EDY77376.1| response regulator receiver domain protein [Octadecabacter antarcticus 307] Length = 221 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++L++D + + + G DG +++ + + D+ ++ L G G Sbjct: 3 YLLVEDNLELANAICSRIGLDGHTVDHAARMADAIAFAQTGEYDLILLDIMLPDGDGRSF 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L+ R A + P+I ++ + + D G DD V KP H E+ AR A+ RR Sbjct: 63 LKQHRA--AKNDTPVIVLTARSEVSDRISLLDLGADDYVTKPFDHAELQARCRAVLRRKA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + G + G V+G V L RE R+LE LM +G+ K ++ +Y Sbjct: 121 GASQTTIKVGDVEFDPVGGHLTVKGNVINLRNRELRLLEILMNAKGQVFHKQKLVDRLYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D+ V EN VE ++ +LR+ L + + R LGY +D + Sbjct: 181 -YDDDVSENAVEVYVGRLRRHLEGSAV--QITTLRGLGYRLDHD 221 >gi|241666518|ref|YP_002984602.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861975|gb|ACS59640.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 224 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 16/170 (9%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ + +P+I + +P+I I+ + + ++G DD + KP E+LAR+ A+ Sbjct: 57 GDGLELIPKIRKKGLTLPIIVITAKGEVPDRITGLETGADDYLAKPFVFDELLARLRAVM 116 Query: 117 RRLKVSNNRAETGPIRVFSDGR---DPE-----VQGEVFPLPRRERRILEYLMANRGKRV 168 RR +ET + S GR DP V G +PRRE +LE LM G+ V Sbjct: 117 RR-------SETLRPALISIGRLSFDPTYCDIIVSGLRLEMPRREALVLECLMRRAGRMV 169 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + A++G FD+ ++ N ++SHIS+LR+KL ++ R +GY Sbjct: 170 PRPALMEAVFG-FDDEIQSNALDSHISRLRRKLAASQAGVVINVIRGVGY 218 >gi|218659866|ref|ZP_03515796.1| two-component response regulator protein [Rhizobium etli IE4771] Length = 223 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H E+LAR+ A+ RR +++ GP+R+ V G L Sbjct: 91 IDAGADDYVTKPFHVEEVLARIRALIRRAAGHASSEIICGPVRLDIKSSKATVNGTALKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V++T++ +Y FD + N +E + +LRK K+G D Sbjct: 151 TSHEYRLLAYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KMGVD 204 Query: 209 PVDSKRFLGYSI 220 +++ R LGY I Sbjct: 205 LIETVRGLGYRI 216 >gi|296138387|ref|YP_003645630.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296026521|gb|ADG77291.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 229 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 24/212 (11%) Query: 27 EGFNSLEFEEWLQS-----SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 EGF + + ++ SA D+ ++ L G ++ + +RA S VP+I ++ Sbjct: 24 EGFETTVVTDGAEALRHFDSAGADIVLLDLMLPGMSGT--DVCKQLRARSSVPVIMVTAR 81 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-------VSNNRAETGPIRVF 134 S + + G DD V KP RE++AR+ A+ RR + + E GP+R+ Sbjct: 82 DSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADTAGGEGLDDGVLEGGPVRMD 141 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 + V GE LP +E +LEYL+ N G+ + + Q+ ++G D + ++ H+ Sbjct: 142 VERHVVTVAGEAVTLPLKEFDLLEYLLRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV 200 Query: 195 SKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 K+LR+K+ DP + K R LGY ++ Sbjct: 201 ----KRLRSKIEADPANPKHLVTVRGLGYKLE 228 >gi|325292348|ref|YP_004278212.1| two component response regulator [Agrobacterium sp. H13-3] gi|325060201|gb|ADY63892.1| two component response regulator [Agrobacterium sp. H13-3] Length = 223 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H E+LARV A+ RR +++ GP+++ + V G L Sbjct: 91 IDAGADDYVTKPFHVEEVLARVRALIRRAAGHASSELVCGPVKLDTKSSKATVNGVTLKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V++T++ +Y FD + N +E + +LRK KLG D Sbjct: 151 TSHEFRLLSYLMHHMGEVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KLGVD 204 Query: 209 PVDSKRFLGYSI 220 +++ R LGY + Sbjct: 205 LIETIRGLGYRM 216 >gi|116255736|ref|YP_771569.1| putative two-component response regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115260384|emb|CAK03488.1| putative two-component response regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 224 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 16/170 (9%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ + +P+I + +P+I I+ + + ++G DD + KP E+LAR+ A+ Sbjct: 57 GDGLELIPKIRKKGLTLPIIVITAKGEVPDRITGLETGADDYLAKPFVFDELLARLRAVM 116 Query: 117 RRLKVSNNRAETGPIRVFSDGR---DPE-----VQGEVFPLPRRERRILEYLMANRGKRV 168 RR +ET + S GR DP V G +PRRE +LE LM G+ V Sbjct: 117 RR-------SETLRPALISIGRLSFDPTYCDIIVSGLRLEMPRREALVLECLMRRAGRMV 169 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + A++G FD+ ++ N ++SHIS+LR+KL ++ R +GY Sbjct: 170 PRPALMEAVFG-FDDEIQSNALDSHISRLRRKLAASQAGVVINVIRGVGY 218 >gi|111019061|ref|YP_702033.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|226361154|ref|YP_002778932.1| two-component response regulator RegX3 [Rhodococcus opacus B4] gi|110818591|gb|ABG93875.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|226239639|dbj|BAH49987.1| two-component response regulator RegX3 [Rhodococcus opacus B4] Length = 229 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 88/167 (52%), Gaps = 17/167 (10%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKV 121 +R+ S VP+I ++ S + + G DD V KP RE++AR+ A+ RR L V Sbjct: 67 LRSRSGVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGVDSELDV 126 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + A E GP+R+ + +V GE LP +E +LEYL+ N G+ + + Q+ ++G Sbjct: 127 AQDSAVLEAGPVRMDVERHVVQVNGEAVTLPLKEFDLLEYLLRNSGRVLTRGQLIDRVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 D + ++ H+ K+LR+K+ DP + R LGY ++ Sbjct: 187 -ADYVGDTKTLDVHV----KRLRSKIETDPAKPEHLVTVRGLGYKLE 228 >gi|16332195|ref|NP_442923.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1653824|dbj|BAA18735.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|122893699|gb|ABM67667.1| CcaR [Synechocystis sp. PCC 6803] Length = 234 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 4/156 (2%) Query: 68 RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125 R+HS +P++ ++ ++ + D+G DD V KP+ E+ ARV A+ RR Sbjct: 67 RSHSYLMPILMMTARDTINDKITGLDAGADDYVVKPVDLGELFARVRALLRRGCATCQPV 126 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E GPIR+ + EV L R+E ILE L+ N + ++++ I +I+ L + Sbjct: 127 LEWGPIRLDPSTYEVSYDNEVLSLTRKEYSILELLLRNGRRVLSRSMIIDSIWKL-ESPP 185 Query: 186 EENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 EE+ V+ H+ LR+KL++ L D +++ +GY + Sbjct: 186 EEDTVKVHVRSLRQKLKSAGLSADAIETVHGIGYRL 221 >gi|89893567|ref|YP_517054.1| hypothetical protein DSY0821 [Desulfitobacterium hafniense Y51] gi|89333015|dbj|BAE82610.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 227 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 86/165 (52%), Gaps = 5/165 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +++R +Q+P+I ++ + FD G DD + KP RE+ ARV A+ RRL Sbjct: 62 VCKVLRKETQIPIIMLTAKGEENDRILGFDLGADDYIVKPFSPRELCARVKAVLRRLDGE 121 Query: 123 NNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ F+ R+ V+G+ L +E +L L N G+ + Q+ +++ Sbjct: 122 TSKEHLITFTGFTINQITREIMVEGKEVKLTTKEFDLLLVLAKNPGQIFTRDQLLDSVWD 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223 FD + V++HI++LR K +++GF D + + R +GY ++N Sbjct: 182 -FDYCGDSRTVDTHINRLRSKFDSQVGFSDFIQTVRGVGYKFEYN 225 >gi|167644991|ref|YP_001682654.1| two component transcriptional regulator [Caulobacter sp. K31] gi|167347421|gb|ABZ70156.1| two component transcriptional regulator, winged helix family [Caulobacter sp. K31] Length = 231 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 3/143 (2%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +R A P++ +S + T + F G DD + KP H E++AR+ A+ RR Sbjct: 60 LDVLRTLRVAKVNTPIMILSGSAEIDTKVKTFSGGADDYMTKPFHKDEMIARIHAVVRRS 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + + +TG I V D + EV G L +E ++LE L +G + K + +Y Sbjct: 120 KGHAQSVIKTGDIIVNLDAKTVEVNGNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G DE E +++ I KLRKKL Sbjct: 180 GGMDEP-ELKIIDVFICKLRKKL 201 >gi|291562324|emb|CBL41140.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 225 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 6/131 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAI-YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G +D + KP H E+ AR+ ++ R+ + G + + R V G+ L Sbjct: 91 LDAGANDYLAKPFHLAELEARIRSLTLRQFTQQDVLLSCGGLTFDTRSRTATVNGQTLTL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESHISKLRKKLRNKLGF 207 R+E ILEYLM ++G+ V++ ++ ++ D +V+ N + HIS LRKKLR LG+ Sbjct: 151 TRKETGILEYLMVHQGRPVSQEELMDHVW---DNSVDSFSNSIRVHISALRKKLRAVLGY 207 Query: 208 DPVDSKRFLGY 218 DP+ ++ GY Sbjct: 208 DPIRNRIGEGY 218 >gi|323484985|ref|ZP_08090339.1| hypothetical protein HMPREF9474_02090 [Clostridium symbiosum WAL-14163] gi|323692815|ref|ZP_08107042.1| transcriptional regulatory protein CutR [Clostridium symbiosum WAL-14673] gi|323401727|gb|EGA94071.1| hypothetical protein HMPREF9474_02090 [Clostridium symbiosum WAL-14163] gi|323503129|gb|EGB18964.1| transcriptional regulatory protein CutR [Clostridium symbiosum WAL-14673] Length = 225 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 94/180 (52%), Gaps = 9/180 (5%) Query: 43 REDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101 R D+ ++ L GK G VL R ++V ++ S ++ ++ D+G +D + K Sbjct: 44 RYDLVLLDLNLPGKDGMTVLRTLRQTDRETKVLIL--SARGEVEDKVEGLDAGANDYLAK 101 Query: 102 PIHHREILARVAAI-YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160 P H E+ AR+ ++ R+ + G + + R V G+ L R+E ILEYL Sbjct: 102 PFHLAELEARIRSLTLRQFTQQDVLLICGELTFDTRSRTAAVNGQTLTLTRKETGILEYL 161 Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 M ++G+ V++ ++ ++ D +V+ N + HIS LRKKLR LG+DP+ ++ GY Sbjct: 162 MVHQGRPVSQEELMDHVW---DNSVDSFSNSIRVHISALRKKLRAALGYDPIRNRIGEGY 218 >gi|153855773|ref|ZP_01996774.1| hypothetical protein DORLON_02793 [Dorea longicatena DSM 13814] gi|149751900|gb|EDM61831.1| hypothetical protein DORLON_02793 [Dorea longicatena DSM 13814] Length = 221 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 80/161 (49%), Gaps = 10/161 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +++P I ++ L FD+G DD V KP + +L R+ A+ R NNR Sbjct: 65 IREKAEIPAIFLTARDEETDMLTAFDTGADDYVVKPFSMKVLLKRIEAVIGR----NNRE 120 Query: 127 E---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G I +F D + + L RE ++LEYLM N+G + K I ++GL + Sbjct: 121 KQLACGEIILFPDKKQVYKNEKEIILTAREYQLLEYLMYNQGNVLTKENILEYVWGLDGQ 180 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRF--LGYSIDW 222 V +N V I++LRKK+ G P+ K LGY ++ Sbjct: 181 FVVDNTVSVTINRLRKKIETDAG-SPIYLKNVFGLGYKLEC 220 >gi|86138408|ref|ZP_01056982.1| DNA-binding response regulator CtrA [Roseobacter sp. MED193] gi|85824933|gb|EAQ45134.1| DNA-binding response regulator CtrA [Roseobacter sp. MED193] Length = 239 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 4/153 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRMARI--ETPILILSGADDTDNKIKGFGFGADDYLTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + +TG I V D + EV + L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSIIKTGKIAVNLDAKTVEVDSKTVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 +YG DE E +++ I KLRKKL G D Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSTATGGD 208 >gi|150021392|ref|YP_001306746.1| two component transcriptional regulator [Thermosipho melanesiensis BI429] gi|149793913|gb|ABR31361.1| two component transcriptional regulator, winged helix family [Thermosipho melanesiensis BI429] Length = 218 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 80/148 (54%), Gaps = 5/148 (3%) Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134 +I ++ + L+ F+SG DD + KP E+ AR A+ RR V + G +++ Sbjct: 75 IIMLTALSQKKDKLEGFESGADDYIVKPFDFEELFARTKALARRKGVLDEEINLGELKIN 134 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 R+ + ++ L + E +L YL+ N + V+K +I A++G E EN+VE +I Sbjct: 135 ILKREVTFKDKLINLSKTEFDLLLYLVKNSDRVVSKEEILDAVWGFSYEG-SENIVEVYI 193 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + LRKK+ + D + + R +GY+I+W Sbjct: 194 NYLRKKISS----DLIKTVRGIGYTINW 217 >gi|88859915|ref|ZP_01134554.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas tunicata D2] gi|88817909|gb|EAR27725.1| response regulator in two-component regulatory system with PhoQ [Pseudoalteromonas tunicata D2] Length = 224 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 81/152 (53%), Gaps = 2/152 (1%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAET 128 +++P++ ++ Q ++ D+G DD + KP H E++AR A+ RR +N Sbjct: 70 QAELPILILTARDRWQDKVEGLDAGADDYLTKPFHPEELIARCNALIRRSAGQANPEMIA 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 GPIR+ + + + L E R+LEYLM N K ++K+++ IY D ++ N Sbjct: 130 GPIRINTRSQQVWLNNIEVSLTGYEYRVLEYLMVNPQKVISKSELTEHIYDQ-DFDLDSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+E + +LRKK+ +P+++ R GY + Sbjct: 189 VIEVFVLRLRKKIDPDGTLNPIETLRGRGYRL 220 >gi|303240217|ref|ZP_07326737.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302592308|gb|EFL62036.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 230 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR SQVP+I ++ + + D+G +D + KP E+LAR+ I +R Sbjct: 62 IEVCRRIRRQSQVPIIILTAKDDVSDKVMGLDTGANDYMTKPFAIEELLARMRGILKRYG 121 Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N N G + + D E PL ++E ++L YLM N G + + +I Sbjct: 122 TINVPNDSNVLSAGKLTLDPDKFKVTYDNEDIPLTKKEFQLLMYLMNNEGLLITREKILE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G+ D NV + +I LR K+ +K G + + R +GY + Sbjct: 182 NIWGI-DYMGLTNVTDVYIRYLRTKIDDKYGVKLIHTIRGMGYKFN 226 >gi|114798462|ref|YP_760726.1| phosphate regulon transcriptional regulatory protein PhoB [Hyphomonas neptunium ATCC 15444] gi|114738636|gb|ABI76761.1| phosphate regulon transcriptional regulatory protein PhoB [Hyphomonas neptunium ATCC 15444] Length = 228 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 61 LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R +RA + +P+I ++ + D+G DD V KP E++ARV A+ R Sbjct: 62 IEICRRVRATGVNPNLPIIMLTARGEESDRIRGLDTGADDYVTKPFSTTELMARVRAVLR 121 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R++ + +R G I + E L E R+L+Y M + G+ ++ Q+ Sbjct: 122 RIRPGLKEDRITVGDIEIDRVAHRVSRNNEDIHLGPTEFRLLDYFMQHPGRVFSREQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D VE V+ H+ +LRK LR G DP+ + R GY++ Sbjct: 182 TVWG-SDVYVEARTVDVHVGRLRKALRQSGGEDPIRTVRSAGYAL 225 >gi|254294576|ref|YP_003060599.1| transcriptional regulator [Hirschia baltica ATCC 49814] gi|254043107|gb|ACT59902.1| two component transcriptional regulator, winged helix family [Hirschia baltica ATCC 49814] Length = 233 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 92/198 (46%), Gaps = 21/198 (10%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74 YI G++GV L E++ + + D+S E K L + RI P Sbjct: 28 YITDLGEEGVDLG--KVYEYDLIILDLSLPDISGYEVL------KQLRMSRI-----NTP 74 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGP 130 ++ +S P ++ + G DD + KP + E++AR+ AI RR S AE TG Sbjct: 75 VLILSGNPDIEAKVKTLGYGADDYLTKPFNKDELIARITAIVRR---SKGHAESVIRTGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I V D + EV+ + L +E ++ E L +G + K + +YG DE E ++ Sbjct: 132 ILVNLDAKTVEVKNQRVHLTGKEYQMFELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190 Query: 191 ESHISKLRKKLRNKLGFD 208 + I KLRKKL+ G D Sbjct: 191 DVFICKLRKKLQKATGGD 208 >gi|222149445|ref|YP_002550402.1| two component response regulator [Agrobacterium vitis S4] gi|221736428|gb|ACM37391.1| two component response regulator [Agrobacterium vitis S4] Length = 221 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 4/159 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L RI R+ +VP+I ++ SL + DSG DD + KP E+ AR+ A+ RR + Sbjct: 63 LKRIRRSGRKVPVIILTANASLDGRVAGLDSGADDYLAKPFEMAELEARLRALIRRGHDL 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ + + S R ++GEV L RE +LEYL+ G V K + +++G F Sbjct: 123 ASPEIAVADLVLNSATRQFSLKGEVLSLTPREHSVLEYLILKAGSTVTKAALSQSVFG-F 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + + +E ++ ++RKKL G + + R LGY + Sbjct: 182 DAETDPSAIEIYVHRVRKKLEG--GAVQIATLRGLGYML 218 >gi|91792162|ref|YP_561813.1| response regulator receiver [Shewanella denitrificans OS217] gi|91714164|gb|ABE54090.1| transcriptional regulator [Shewanella denitrificans OS217] Length = 224 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 3/130 (2%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLP 150 SG DD + KP E+ AR+ A+ RR +++ N + S+ + QG+ L Sbjct: 93 SGADDYLGKPFSFDELHARLVALTRRGQLNQINANLTVAEFELDSNKKSVFYQGQAIELT 152 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 + E +ILEYL +N+ + + QI A+ G FD ++ +N +E+H+S +RKK + G PV Sbjct: 153 KNEYKILEYLFSNQEQVLNPEQISEAVVGSFD-SLSKNTIEAHLSSIRKKAKLLGGTLPV 211 Query: 211 DSKRFLGYSI 220 +KR GY + Sbjct: 212 KNKRGFGYYV 221 >gi|254442621|ref|ZP_05056097.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198256929|gb|EDY81237.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 239 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 108/215 (50%), Gaps = 14/215 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66 R L + GY+ +DG +G+ +S DV ++ L G+ G +L+ R Sbjct: 34 RGLKEQGYVVELAEDGE--DGYIH-------ATSQSYDVIVLDIMLPGRDGLSILKSLR- 83 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNR 125 ++ + VP+I ++ L L+ + G DD + KP + E++AR+ A++RR S + Sbjct: 84 -KSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSSGKSLSM 142 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + V R+ GE+ L RE +LEYLM + G+ + +TQI ++G +D Sbjct: 143 MQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG-YDFDP 201 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVV+ + +LRKK+ +++ R GY + Sbjct: 202 STNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRM 236 >gi|254230838|ref|ZP_04924165.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis C] gi|124599897|gb|EAY58907.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis C] Length = 250 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 97/193 (50%), Gaps = 13/193 (6%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + + + A D + + L+ G ++ + +RA S VP+I ++ S Sbjct: 27 EGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 86 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGR 138 + + G DD V KP RE++AR+ A+ RR ++S+ E+GP+R+ + Sbjct: 87 EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERH 146 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 V G+ LP +E +LEYLM N G+ + + Q+ ++G D + ++ H+ Sbjct: 147 VVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV---- 201 Query: 199 KKLRNKLGFDPVD 211 K+LR+K+ DP + Sbjct: 202 KRLRSKIEADPAN 214 >gi|15828317|ref|NP_302580.1| two-component system response regulator [Mycobacterium leprae TN] gi|221230794|ref|YP_002504210.1| putative two-component system response regulator [Mycobacterium leprae Br4923] gi|1731206|sp|P54884|REGX3_MYCLE RecName: Full=Sensory transduction protein regX3 gi|467058|gb|AAA17242.1| phoP [Mycobacterium leprae] gi|13094010|emb|CAC31956.1| probable two-component system response regulator [Mycobacterium leprae] gi|219933901|emb|CAR72538.1| probable two-component system response regulator [Mycobacterium leprae Br4923] Length = 198 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 15/165 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKV 121 +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR ++ Sbjct: 38 LRVRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEI 97 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S+ E+GP+R+ + V G LP +E +LEYLM N G+ + + Q+ ++G+ Sbjct: 98 SDGVLESGPLRMDVERHVVSVNGYAITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGV- 156 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221 D + ++ H+ K+LR+K+ DP + + R LGY ++ Sbjct: 157 DYVGDTKTLDVHV----KRLRSKIEADPANPVHLVTVRGLGYKLE 197 >gi|298245119|ref|ZP_06968925.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297552600|gb|EFH86465.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 246 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 10/171 (5%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 EWL+ R D+ I+ L KG VLE+ R +RA ++ ++D +Q + +SG Sbjct: 39 EWLEQ--RPDLVIIDPML--KGGNVLEMCRDLRAKHDALVLVLTDSKEVQDEVRCLESGA 94 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNR-----AETGPIRVFSDGRDPEVQGEVFPLP 150 DD + KP ++LAR+ A+ RR + + R GP+RV S + V G++ L Sbjct: 95 DDYLRKPFFPAQLLARIRAVSRRARSTLERRPSSVVTVGPLRVDSLHNEVSVHGKLVRLT 154 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E ++L L N QI + ++G +D + ++++HI LR+K+ Sbjct: 155 PTESKLLHLLAINANDVCTANQIVTHVWG-YDGDGDACLIKAHIRHLRQKI 204 >gi|295102156|emb|CBK99701.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 225 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 6/131 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAI-YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G +D + KP H E+ AR+ ++ R+ + G + + R V G+ L Sbjct: 91 LDAGANDYLAKPFHLAELEARIRSLTLRQFTQQDVLLSCGGLSFDTRSRTAAVNGQTLTL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE--NVVESHISKLRKKLRNKLGF 207 R+E ILEYLM ++G+ V++ ++ ++ D +V+ N + HIS LRKKLR LG+ Sbjct: 151 TRKETGILEYLMVHQGRPVSQEELMDHVW---DSSVDSFSNSIRVHISALRKKLRAVLGY 207 Query: 208 DPVDSKRFLGY 218 DP+ ++ GY Sbjct: 208 DPIRNRIGEGY 218 >gi|260462382|ref|ZP_05810590.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259031876|gb|EEW33144.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 221 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 81/155 (52%), Gaps = 8/155 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 R ++P++ ++ + D+G DD V KP H E+LARV A+ RR +++ Sbjct: 68 RGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARVRALIRRAAGHASSEL 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 GP+R+ + +V G L E R+L YLM + G V++T++ +Y FD Sbjct: 128 TCGPLRLDTKASKADVDGVPLKLTSHEFRLLAYLMHHMGDVVSRTELVEHLYDQDFDR-- 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E + +LRK K+G D +++ R +GY + Sbjct: 186 DSNTIEVFVGRLRK----KMGIDMIETVRGMGYRM 216 >gi|114331353|ref|YP_747575.1| two component transcriptional regulator, winged helix family protein [Nitrosomonas eutropha C91] gi|114308367|gb|ABI59610.1| two component transcriptional regulator, winged helix family [Nitrosomonas eutropha C91] Length = 228 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D L+++ G ++ N+ E +L + R + + I+ L GK L Sbjct: 3 ILVIEDEFLLQNQIRQQLEAAGYMVDTCNNGEEGLFLATEYRLNAAIIDIGLSGKSG--L 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +R S +P++ ++ S Q + ++G DD + KP E+ ARV A+ RR Sbjct: 61 DVIKALRQRGSLLPILILTARSSWQDKVRGLETGADDYLTKPFQMEELQARVKALLRRAN 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E GPI V + + G L E R+LE L+ +RG+ ++K + A+Y Sbjct: 121 GIPQTLLECGPIAVDMTAQQVSINGVNIELTSFEYRLLEELVRHRGEVLSKQILADALYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E I +LR+KL P+++ R GY Sbjct: 181 -HDEDRDSNVLEVMIGRLRRKLDPAGTLKPIETMRGRGY 218 >gi|239820932|ref|YP_002948117.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239805785|gb|ACS22851.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 224 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 88/162 (54%), Gaps = 4/162 (2%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +RA S +P++ ++ + +LQ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LDVLRRLRARKSTMPVLMLTAFDTLQDRVRGLDLGADDYLAKPFDLPELEARVRALLRRS 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S E G +R + GR + L RE +LE LM G+ V K Q+ + +YG Sbjct: 120 TNSTPYLEHGLLRFDTVGRRVFYDKKPLDLSPRELAVLELLMMREGRVVGKEQMVNHLYG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE V +N +E ++ +LRKKL LG + + + R +GY +D Sbjct: 180 WGDE-VGDNAIEVNVYRLRKKL-EPLGCE-IRTVRGMGYLMD 218 >gi|210621111|ref|ZP_03292474.1| hypothetical protein CLOHIR_00417 [Clostridium hiranonis DSM 13275] gi|210154932|gb|EEA85938.1| hypothetical protein CLOHIR_00417 [Clostridium hiranonis DSM 13275] Length = 224 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 85/159 (53%), Gaps = 19/159 (11%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVSN 123 P++ ++ +L ++ F +G +D + KP + E++ARV AI R L+ + Sbjct: 72 TPVLILTAKEALDDKVEAFQTGANDYLTKPFYMEELVARVYAILRTNGKLTEKTGLQFKD 131 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 +T RVF + E L ++ +LEY + NRG + K QI+ I+G+ + Sbjct: 132 MYIDTSEKRVF-------IGDEEITLQNKQYNLLEYFVMNRGAILLKEQIYDRIWGIDSD 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 A E +VE ++S LRKKL +K G+D + +KR +GY +D Sbjct: 185 ATIE-IVEVYVSNLRKKL-SKFGYDKYIKTKRKVGYILD 221 >gi|119475918|ref|ZP_01616270.1| response regulator [marine gamma proteobacterium HTCC2143] gi|119450545|gb|EAW31779.1| response regulator [marine gamma proteobacterium HTCC2143] Length = 221 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 84/157 (53%), Gaps = 7/157 (4%) Query: 67 IRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +RA+ V P++ ++ L + D G DD ++KP +E++AR+ A+ RR+ S + Sbjct: 66 LRANKIVTPMLILTARDDLSDKITALDGGADDYLSKPFEIKELMARIRALGRRMNSSISS 125 Query: 126 AET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 T G + + S EV PL RRE +L+ LM N G+ K + + +Y + E Sbjct: 126 VITAGRVSLDSANHHVEVDAIETPLSRREYTVLKALMENVGRIQTKAALENKLYS-WGEE 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + N +E HIS LRKK+ GF + + R +GY+ID Sbjct: 185 ISSNAIEVHISNLRKKMPE--GF--IKTVRGVGYTID 217 >gi|260427756|ref|ZP_05781735.1| cell cycle transcriptional regulator CtrA [Citreicella sp. SE45] gi|260422248|gb|EEX15499.1| cell cycle transcriptional regulator CtrA [Citreicella sp. SE45] Length = 238 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/151 (33%), Positives = 77/151 (50%), Gaps = 4/151 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R ++ P++ +S + + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRLSRINT--PILILSGADDTENKIKGFGFGADDYLTKPFHRDELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + TG I V D + EV G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSVIRTGKISVNLDAKTVEVGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 +YG DE E +++ I KLRKKL G Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSEATG 206 >gi|256397315|ref|YP_003118879.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363541|gb|ACU77038.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 226 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 8/166 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQIRAKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRQAA 121 Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 SDEPDGGALEAGPVRMDVDRHKVTVDGRPVELPLKEFELLEMLLRNSGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221 +G D + ++ H+ +LR K+ G PV + R LGY + Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPGT-PVHLVTVRGLGYKFE 225 >gi|159185258|ref|NP_355482.2| two component response regulator [Agrobacterium tumefaciens str. C58] gi|159140519|gb|AAK88267.2| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 213 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 88/165 (53%), Gaps = 2/165 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE + + + R+ + VP++ ++ ++ +D D+G DD + KP E+LAR+ A++ Sbjct: 46 GEGLNLVASLRRSKNSVPILVLTALGNVDHRVDGLDAGADDYLAKPFAIEELLARLRALH 105 Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR +++ G + + + V G L RRE +LE LM + V ++ + Sbjct: 106 RRGPSLADKYTRFGNLGIDPRSNEVSVAGSSIELRRREYLVLEALMRRPNRIVTRSSLIE 165 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A+Y L DE +E N +++HIS++RKKL + + R +GY + Sbjct: 166 AVYTLDDE-IESNALDAHISRIRKKLAQAEATVEIRAVRNIGYLV 209 >gi|108797641|ref|YP_637838.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119866728|ref|YP_936680.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|126433265|ref|YP_001068956.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|108768060|gb|ABG06782.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119692817|gb|ABL89890.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|126233065|gb|ABN96465.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 228 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 58/209 (27%), Positives = 101/209 (48%), Gaps = 19/209 (9%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + + + A D + + L+ G ++ + +RA S VP+I ++ S Sbjct: 24 EGFETTVVADGPSALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNRAETGPIRVFSDG 137 + + G DD V KP RE++AR+ A+ RR V + E GP+R+ + Sbjct: 84 EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGTDVDDPGVPDGVLEAGPVRMDVER 143 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 V G+ LP +E +LEYLM N G+ + + Q+ ++G D + ++ H+ Sbjct: 144 HVVSVNGQSITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV--- 199 Query: 198 RKKLRNKLGFDPVD-----SKRFLGYSID 221 K+LR+K+ DP + + R LGY ++ Sbjct: 200 -KRLRSKIEADPANPVHLVTVRGLGYKLE 227 >gi|257783900|ref|YP_003179117.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] gi|257472407|gb|ACV50526.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] Length = 226 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 7/163 (4%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+L R +R+ HS+ ++ +S S+ + D+G DD + KP E+ AR+ + RR Sbjct: 60 LDLLRTLRSEHSETKVLILSARSSVSDRIVGLDAGADDYLIKPFAFGELEARIRTLLRRE 119 Query: 120 KVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + T G +R + R V L ++E ILEYLM N G V+ ++ + + Sbjct: 120 YIHGEASLTLGELRFDTTARQVFVGDAQVNLTKKELAILEYLMRNAGAVVSSEELMAHAW 179 Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 D V+ N V HI +RKKLR LG+DP+ +K GY Sbjct: 180 ---DSNVDLFSNSVRVHIFSIRKKLREALGYDPISNKVGEGYC 219 >gi|298491165|ref|YP_003721342.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233083|gb|ADI64219.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 229 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 90/176 (51%), Gaps = 5/176 (2%) Query: 45 DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 DV ++ L GK G +L+ R RA +P+I ++ L L+ + G DD ++KP Sbjct: 46 DVIVLDIMLPGKDGLAILKSLR--RAGRNLPVILLTARNELDDRLEGLNLGADDYLSKPF 103 Query: 104 HHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E++AR+ A+ RR+ N G + + R+ ++ L RE +LEYLM Sbjct: 104 FVEELIARIHAVIRRISGERQNILRVGSLALDRITREVTCNYQLVELTTREFNLLEYLMR 163 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + G+ +TQI ++G +D N+V+ + +LRKK+ G +DS R +GY Sbjct: 164 SPGRVFTRTQILEHVWG-YDFNPNTNLVDVCVQRLRKKIEKVAGDSWIDSVRSVGY 218 >gi|171316878|ref|ZP_02906087.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171097959|gb|EDT42777.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 225 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 7/219 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D A + + L + +++ E + + + R D ++ L G G++V Sbjct: 3 LLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R+ R VP++ ++ + S+ +D F +G DD V KP RE++AR+ A+ RR Sbjct: 63 L--ARLRRRSDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V+ + G + R+ V L RRE ILE LM + K V+K ++ +++ Sbjct: 121 GVATTQLVCGDLVYAFGTREFRCSDAVLALRRREHAILETLMLQQNKTVSKARLMDSVFA 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L D+ + ++ +I +LRK L + + R LGY Sbjct: 181 LDDDP-SADAIDIYIHRLRKHLVGSTA--EIITLRGLGY 216 >gi|78047865|ref|YP_364040.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|121593755|ref|YP_985651.1| two component transcriptional regulator [Acidovorax sp. JS42] gi|78036295|emb|CAJ23986.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|120605835|gb|ABM41575.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 222 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 108/225 (48%), Gaps = 15/225 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D L+ G +A G+S++ + + E + A E A+ L +E Sbjct: 4 LLVEDDELIGKGIVAGLRKHGISVQHVLTAQDAETVH--AEETFHALVLDLGLPDRDGME 61 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +RA Q+P++ ++ +++ L G DD + KP RE+ AR+ A+ RR Sbjct: 62 LLASMRAVEPQLPVLILTARDAIEHRLKGLHDGADDYMVKPFDLRELAARLHALVRR--- 118 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + RA GP+R+ + QGE L RRE +L +L G+ V + + Sbjct: 119 TQGRAAQVISAGPLRLEPESGLAWFQGEAVTLSRREVDLLAHLANADGRWVPPDMLNERL 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 YGL +E + N + HI +R+ KLG + +++ R LGY + W Sbjct: 179 YGLGEE-IGSNALNVHIHNIRR----KLGAEAIETVRGLGYRLGW 218 >gi|158425609|ref|YP_001526901.1| two-component response regulator [Azorhizobium caulinodans ORS 571] gi|158332498|dbj|BAF89983.1| two-component response regulator [Azorhizobium caulinodans ORS 571] Length = 224 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 3/132 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFP 148 D+G DD + KP E++ARV A+ RR ++ S+ +R + R ++ Sbjct: 91 LDAGADDYLAKPFEPVELIARVRAVMRRAQLDQSDGVVTVANLRFCTAARTAYIEDTSLI 150 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 LPRRE +LE L+ G+ V + + +A YG FD+ ++ N +++H+S+LRK+LR Sbjct: 151 LPRRELALLEALIRRVGQVVLRETLENAAYG-FDDEIQSNAIDAHLSRLRKRLREHNCQA 209 Query: 209 PVDSKRFLGYSI 220 + R LGY + Sbjct: 210 QIRPLRGLGYML 221 >gi|126736445|ref|ZP_01752186.1| DNA-binding response regulator CtrA [Roseobacter sp. CCS2] gi|126713983|gb|EBA10853.1| DNA-binding response regulator CtrA [Roseobacter sp. CCS2] Length = 237 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S ++ L F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRLSRIDT--PILILSGDDGTESKLKGFGFGADDYLTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + +TG I V D + EV+G L +E ++LE L +G + K + Sbjct: 117 RRSKGHAQSIIKTGQIAVNLDAKTVEVEGSTVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +YG DE E +++ I KLRKKL Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201 >gi|311106334|ref|YP_003979187.1| transcriptional regulator QseB 2 [Achromobacter xylosoxidans A8] gi|310761023|gb|ADP16472.1| transcriptional regulatory protein QseB 2 [Achromobacter xylosoxidans A8] Length = 222 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 109/229 (47%), Gaps = 21/229 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---E 58 +L++D L+ G +A G+ G +++ A + ++ A ++ G Sbjct: 3 VLLVEDDELIGKGIVA-----GLRAHGIMVQHVCTAVEAEAAQTGNSFNALVLDLGLPDR 57 Query: 59 KVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL ++RA +P++ +S +++ + G DD + KP RE+ AR+ A+ R Sbjct: 58 DGMELLSVVRAIEPCLPVLILSARDAIEHRIAGLHQGADDYMTKPFDLRELAARLHALVR 117 Query: 118 RLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + RA GP+R+ + ++G+ L RRE +L +L + +A + Sbjct: 118 R---TQGRAAQIIAAGPLRLEPESGLAWLEGQAISLSRREVDLLAHLATADARWIAPDLL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +YGL +E V N + HI LR+ KLG + +++ R LGY + W Sbjct: 175 SERLYGLGEE-VSSNALNVHIHNLRR----KLGAEVIETSRGLGYRLGW 218 >gi|315499320|ref|YP_004088124.1| two component transcriptional regulator phob, winged helix family [Asticcacaulis excentricus CB 48] gi|315417332|gb|ADU13973.1| two component transcriptional regulator PhoB, winged helix family [Asticcacaulis excentricus CB 48] Length = 231 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R +RA ++ +P++ ++ + D+G DD V KP E++AR+ A+ R Sbjct: 64 IEVTRRLRAQTETRNLPIVMLTARSEETDRIRGLDTGADDYVIKPFSMVELVARIRAVLR 123 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R++ +S +R G I + + G L E ++L+YLM + + ++ Q+ Sbjct: 124 RIRPGLSEDRVTFGEIVIDRLSHRVQRSGRDVHLGPTEYKLLDYLMQHPKRVFSREQLLD 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++G D VE V+ HI +LRK L +DP+ + R GYS+D Sbjct: 184 AVWG-NDVYVEARTVDVHIGRLRKALNADTDYDPIRTVRSAGYSLD 228 >gi|294011554|ref|YP_003545014.1| OmpR-family two-component system response regulator [Sphingobium japonicum UT26S] gi|307294329|ref|ZP_07574173.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] gi|292674884|dbj|BAI96402.1| OmpR-family two-component system response regulator [Sphingobium japonicum UT26S] gi|306880480|gb|EFN11697.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] Length = 235 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L ++ A Q P++ +S + + + F G DD V KP H E++AR+ A+ RR K Sbjct: 63 LKKLRAAKVQTPVLILSGVAEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSKGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + TG + V D + EV G L +E +LE L +G + K + +YG Sbjct: 123 SQSVIRTGKLAVNLDAKTVEVDGNRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYGGM 182 Query: 182 DEAVEENVVESHISKLRKKL 201 DE E +++ I KLRKKL Sbjct: 183 DEP-ELKIIDVFICKLRKKL 201 >gi|163731900|ref|ZP_02139347.1| transcriptional regulator CtrA [Roseobacter litoralis Och 149] gi|161395354|gb|EDQ19676.1| transcriptional regulator CtrA [Roseobacter litoralis Och 149] Length = 239 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 4/148 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S + + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRLARI--ETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + ETG I V D + V + L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSVIETGLISVNLDAKTVSVDNKTVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203 +YG DE E +++ I KLRKKL N Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSN 203 >gi|311029649|ref|ZP_07707739.1| two component transcriptional regulator, winged helix family protein [Bacillus sp. m3-13] Length = 225 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 103/213 (48%), Gaps = 14/213 (6%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY +DGV E N L S + I+ + K EL + IR Sbjct: 21 LKKEGYTVFEANDGV--EATNIL-------SQRTVHLCIIDVMMPNKNG--WELCKEIRE 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAET 128 +P++ ++ + + F G DD + KP E++ RV A+ RR K+ + N+ Sbjct: 70 LYDLPILMVTAKGESEDKVKGFQQGTDDYIVKPFDTHELIMRVKALLRRYKINTTNKVTI 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + ++ + + E P +E ++L L ++ G+ ++ Q+ I+G E + Sbjct: 130 GNVVIDANSMEVTINHEPIIFPLKEFQLLFKLASHPGQVFSRDQLIEEIWGSDFEGFDRT 189 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V+SHI K+RKKL ++ FD + + R LGY ++ Sbjct: 190 -VDSHIKKIRKKLNQQMAFD-ILTIRGLGYRLE 220 >gi|217976623|ref|YP_002360770.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] gi|217501999|gb|ACK49408.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] Length = 236 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 8/130 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 FD+G DD V KP H E+LAR+ A+ RR +++ GP+ G V+G+ L Sbjct: 91 FDAGADDYVTKPFHIEELLARLRALMRRSAGHASSVFSCGPVSFDERGGKVSVEGQPVKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM ++GK V++ +I +Y FD + N +E + +LRK KLG D Sbjct: 151 TSHEYRLLGYLMHHQGKIVSRAEIVEHLYDQDFDR--DSNTIEVFVGRLRK----KLGVD 204 Query: 209 PVDSKRFLGY 218 + + R LGY Sbjct: 205 VIHTMRGLGY 214 >gi|110679831|ref|YP_682838.1| transcriptional regulator CtrA [Roseobacter denitrificans OCh 114] gi|109455947|gb|ABG32152.1| transcriptional regulator CtrA [Roseobacter denitrificans OCh 114] Length = 239 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 4/148 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S + + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRLARI--ETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + ETG I V D + V + L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSVIETGLISVNLDAKTVSVDNKTVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203 +YG DE E +++ I KLRKKL N Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSN 203 >gi|13476381|ref|NP_107951.1| two-component system, regulatory protein [Mesorhizobium loti MAFF303099] gi|14027142|dbj|BAB54096.1| two-component system, regulatory protein [Mesorhizobium loti MAFF303099] Length = 221 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 8/155 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 R ++P++ ++ + D+G DD V KP H E+LAR+ A+ RR +++ Sbjct: 68 RGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARLRALIRRAAGHASSEL 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 GP+R+ + +V G L E R+L YLM + G+ V++T++ +Y FD Sbjct: 128 TCGPLRLDTKASKADVDGVPLKLTSHEFRLLAYLMHHMGEVVSRTELVEHLYDQDFDR-- 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E + +LRK K+G D +++ R +GY + Sbjct: 186 DSNTIEVFVGRLRK----KMGIDMIETVRGMGYRM 216 >gi|229825510|ref|ZP_04451579.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC 49176] gi|229790073|gb|EEP26187.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC 49176] Length = 223 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 80/144 (55%), Gaps = 2/144 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120 ++ R IR HS VP+I ++ + L F+ GVD+ V+KP + ++ARV AI RR Sbjct: 65 QVCREIRRHSTVPIIMLTAKSDEKDELQGFELGVDEYVSKPFSPKILMARVEAILRRSGA 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 VS++ E G I++ + + G L +E +L Y M N+G +++ +I + ++ Sbjct: 125 VSDDCLEAGGIKIDRASHEVIIDGSPVDLSVKEFELLLYFMTNKGIALSREKILNNVWN- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR K+ +K Sbjct: 184 YDYFGDARTIDTHVKKLRAKMGDK 207 >gi|163797997|ref|ZP_02191938.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [alpha proteobacterium BAL199] gi|159176718|gb|EDP61290.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [alpha proteobacterium BAL199] Length = 223 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 114/227 (50%), Gaps = 12/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D V + +A F G +++ S E + D+ ++ L G G Sbjct: 3 ILLVEDTEDVAEAVVATFTRHGHAIDHAPSCAAAEDALAVQEYDLVILDLMLPDGSG--- 59 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE R +RA + +P++ ++ + + D+G DD + KP RE+ AR A+ RR Sbjct: 60 LETLRALRAARRTMPVLVLTARLDVDDRVAALDNGADDYLMKPFDLRELEARARALIRR- 118 Query: 120 KVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S+ R+ E G + + + GR V G+ L RRE +LE L+ NRG+ ++K ++F Sbjct: 119 -QSDERSGVIEYGNLTLDAAGRTAAVAGQPLALTRREFGLLEALLVNRGRVMSKERLFDR 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ + V N VE +I++LR+KL + + R LGY I+ + Sbjct: 178 LFSFDETEVGINAVELYIARLRRKL--AASQVSIRTLRGLGYQIEKH 222 >gi|114762503|ref|ZP_01441947.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Pelagibaca bermudensis HTCC2601] gi|114544758|gb|EAU47763.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Roseovarius sp. HTCC2601] Length = 219 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 6/149 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPI 131 P+I ++ + +D ++G DD + KP E+ AR+ ++ RR + N T GP+ Sbjct: 73 TPVIILTALDQVSDRIDGLNAGADDYLVKPFDLSELSARIGSVARRYSGNPNPILTHGPL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + R G PL RE + E +A G+ ++K Q+ +Y FD VE N +E Sbjct: 133 DIDLAARSVHRDGRHVPLTAREWALFEAFLARPGQLLSKAQLEEKLYA-FDAEVESNTIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 H+S+LRK KLG ++++R +GY + Sbjct: 192 VHVSRLRK----KLGSATIETERGMGYRL 216 >gi|126172825|ref|YP_001048974.1| two component transcriptional regulator [Shewanella baltica OS155] gi|153002255|ref|YP_001367936.1| two component transcriptional regulator [Shewanella baltica OS185] gi|217974842|ref|YP_002359593.1| winged helix family two component transcriptional regulator [Shewanella baltica OS223] gi|304410933|ref|ZP_07392550.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307304896|ref|ZP_07584646.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|125996030|gb|ABN60105.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS155] gi|151366873|gb|ABS09873.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|217499977|gb|ACK48170.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] gi|304350830|gb|EFM15231.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306912298|gb|EFN42722.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] Length = 224 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 9/150 (6%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----YRRLKVSNNRAET 128 P+I ++ ++ F++G DD + KP H +E+LAR+ A+ + RL S+ + Sbjct: 73 TPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAHGRLNTSSKQLSY 132 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + + +V ++F L E R+L+ + + K ++KTQ+ +Y FD+ E N Sbjct: 133 GGVILDEAEQTVKVADQLFELTAMEFRLLKIFLMSPKKLLSKTQLTDKLYQ-FDDEKESN 191 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VVE +++ LRK KLG ++++R GY Sbjct: 192 VVEVYVTHLRK----KLGKTAIETRRGQGY 217 >gi|315442360|ref|YP_004075239.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|315260663|gb|ADT97404.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 228 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 16/166 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LK 120 +R+ S VP+I ++ S + + G DD V KP RE++AR+ A+ RR + Sbjct: 67 LRSRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADTDDVG 126 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V++ E GP+R+ + V G LP +E +LEYLM N G+ + + Q+ ++G Sbjct: 127 VADGVLEAGPVRMDVERHVVSVNGSPITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG- 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221 D + ++ H+ K+LR+K+ DP + + R LGY ++ Sbjct: 186 ADYVGDTKTLDVHV----KRLRSKIESDPANPVHLVTVRGLGYKLE 227 >gi|291522156|emb|CBK80449.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 226 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 80/145 (55%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR +S+VP+I ++ + L FD GVD+ + KP + ++ARV AI RR V Sbjct: 65 QVCREIRQYSKVPIIMLTAKSDEKDELQGFDLGVDEYITKPFSPKILVARVEAILRRSNV 124 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ E G I + + + G+ L +E +L Y M+N+G +++ +I + ++ Sbjct: 125 LAADDTMEAGGIELNKAAHEVLIDGKSVELSYKEFELLAYFMSNQGVALSRERILNNVWN 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR KL K Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGAK 208 >gi|152977294|ref|YP_001376811.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026046|gb|ABS23816.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 221 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 13/165 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +IIR S VP+I ++ + + + F+ GVDD + KP H+ + RV A+ RR + Sbjct: 63 ICKIIRGQSDVPIIMLTGLQNEENEIKGFELGVDDYITKPFHYAIFIKRVEAVLRR--AA 120 Query: 123 NNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E I F S V G+ L +E I+ L+ NRGK ++++ + + Sbjct: 121 STEVENANILQFHELMLNSTAYAAYVNGDQVELTTKEFEIIYTLLQNRGKVLSRSDLLNK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G ++ + V+++HI LRK KL + + + +GY ID Sbjct: 181 VWG-YEHYGDVRVIDTHIKNLRK----KLCIPYIKTVKGIGYKID 220 >gi|221639032|ref|YP_002525294.1| winged helix family two component transcriptional regulator [Rhodobacter sphaeroides KD131] gi|221159813|gb|ACM00793.1| Two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides KD131] Length = 232 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 4/151 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S + + F G DD + KP H E++AR+ AI Sbjct: 54 GHEVLRQLRLARVDT--PILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAII 111 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + TG I V D + EV+G+ L +E ++LE L +G + K + Sbjct: 112 RRSKGHAQSVIRTGKILVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 171 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 +YG DE E +++ I KLRKKL G Sbjct: 172 HLYGGMDEP-ELKIIDVFICKLRKKLAEATG 201 >gi|149184842|ref|ZP_01863160.1| phosphate regulon response regulator [Erythrobacter sp. SD-21] gi|148832162|gb|EDL50595.1| phosphate regulon response regulator [Erythrobacter sp. SD-21] Length = 239 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 90/171 (52%), Gaps = 6/171 (3%) Query: 56 KGEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 +G +E+ R +R A + VP+I ++ + + ++G DD + KP RE+LARV Sbjct: 68 EGTSGIEVCRRLRRDKATASVPIIMLTAREAEDDRIRGLETGADDYLTKPFSPRELLARV 127 Query: 113 AAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 AA+ RR++ ++ E G + + +G+ L E R+L++ M + G+ ++ Sbjct: 128 AAVMRRIRPVLAGESIEVGDLALDPVAHKVTRRGKTLKLGPTEYRLLKFFMESPGRVFSR 187 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 Q+ ++G + +E V+ HI +LRK + + DPV + R GYS++ Sbjct: 188 NQLLDGVWG-TESDIELRTVDVHIRRLRKAIEIEGAKDPVRTVRSAGYSLE 237 >gi|160876979|ref|YP_001556295.1| two component transcriptional regulator [Shewanella baltica OS195] gi|160862501|gb|ABX51035.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|315269182|gb|ADT96035.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 224 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 9/150 (6%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----YRRLKVSNNRAET 128 P+I ++ ++ F++G DD + KP H +E+LAR+ A+ + RL S+ + Sbjct: 73 TPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAHGRLNTSSKQLSY 132 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + + +V ++F L E R+L+ + + K ++KTQ+ +Y FD+ E N Sbjct: 133 GGVILDEAEQTVKVADQLFELTAMEFRLLKIFLMSPKKLLSKTQLTDKLYQ-FDDEKESN 191 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VVE +++ LRK KLG ++++R GY Sbjct: 192 VVEVYVTHLRK----KLGKTAIETRRGQGY 217 >gi|281491496|ref|YP_003353476.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] gi|281375214|gb|ADA64727.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] Length = 228 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 20/226 (8%) Query: 14 GYIALFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAF--------------LIGKG 57 Y L +D SL + L FE++ S+A + +SA+E F +I K Sbjct: 2 SYHVLIVEDEPSLSDYVKKELIFEDYQVSTAFDGLSALEIFETAKPAIDVVLLDWMIPKL 61 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 + + L R+ + + P+I ++ + + D+G DD + KP E+LAR+ I+R Sbjct: 62 DGLTVLRRMKKIQADTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFR 121 Query: 118 RLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + S+++ E ++V EV G+ L +RE +L Y + +RG V++ I Sbjct: 122 KWSNSSSKVYELDYLKVDLSAHTTEVAGKTVNLTQREFSLLSYFLEHRGIVVSRADILDD 181 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G+ FD +EN V++++ LR K+ +++ R +GY ++ Sbjct: 182 VWGMDFDG--QENTVDAYVRYLRAKIDLPNHKSLIETVRGIGYRLN 225 >gi|116490257|ref|YP_809801.1| DNA-binding response regulator [Oenococcus oeni PSU-1] gi|118586509|ref|ZP_01543953.1| two-component system regulator [Oenococcus oeni ATCC BAA-1163] gi|290889640|ref|ZP_06552729.1| hypothetical protein AWRIB429_0119 [Oenococcus oeni AWRIB429] gi|116090982|gb|ABJ56136.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Oenococcus oeni PSU-1] gi|118433073|gb|EAV39795.1| two-component system regulator [Oenococcus oeni ATCC BAA-1163] gi|290480637|gb|EFD89272.1| hypothetical protein AWRIB429_0119 [Oenococcus oeni AWRIB429] Length = 231 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 3/152 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE- 127 AH + P++ ++ S+ + F+ G DD + KP H E+LARV A+ RR + E Sbjct: 73 AHIETPVLILTAKDSVDDKVKGFEVGADDYLTKPFHREELLARVEALLRRAGIDTEEKEI 132 Query: 128 -TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G +++ R V + L +E IL YL N+ + K QIF ++GL D Sbjct: 133 NIGNLKIHLSNRTVTVGNQNVQLVGKEYDILVYLAKNKNIIITKDQIFDRVWGL-DSDTT 191 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +VV +++ LR+KL + D + + R +G+ Sbjct: 192 TSVVNIYLNNLRRKLESVGKNDLIKTLRNVGF 223 >gi|94310569|ref|YP_583779.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354421|gb|ABF08510.1| DNA-binding response regulator in two-component regulatory system [Cupriavidus metallidurans CH34] Length = 230 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 86/160 (53%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 63 LRRLRQRRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFALNELEARARALIRRSHGH 122 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + A E GP+R S R + GE+ L RER +LE L+ G+ V K + I+G+ Sbjct: 123 DRTALECGPLRYDSVSRAFTLHGELLQLTGRERAVLEVLLMRDGRAVNKAALSEKIFGI- 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE+V + +E ++ +LRKKL G V + R LGY ++ Sbjct: 182 DESVNADAIEIYVYRLRKKLEGS-GVSIV-TLRGLGYLLE 219 >gi|296117363|ref|ZP_06835953.1| two component transcriptional regulator, winged helix family protein [Gluconacetobacter hansenii ATCC 23769] gi|295976129|gb|EFG82917.1| two component transcriptional regulator, winged helix family protein [Gluconacetobacter hansenii ATCC 23769] Length = 256 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 2/157 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123 R A P++ +S S Q + F +G DD V +P E+ AR+ A+ RR K S Sbjct: 65 RCRAARIATPILILSAQDSAQAKVKAFSTGADDYVTRPYDPMELTARMQAVIRRSKGYSE 124 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G +R+ D RD V G L +E ILE L+ +G + K + +YG DE Sbjct: 125 PTLQAGALRLSLDSRDVSVNGRSVHLTGKEYMILELLLLRKGMVLTKDAFLNHLYGGMDE 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E +++ I KLRKKL+ G + + + GY + Sbjct: 185 P-EMKIIDVFICKLRKKLQKAGGENLITTVWGQGYML 220 >gi|306819943|ref|ZP_07453594.1| DNA-binding response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551979|gb|EFM39919.1| DNA-binding response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 224 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 16/183 (8%) Query: 47 SAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106 + I +I K + + L I + +++P+I ++ + + DSG DD + KP + Sbjct: 47 AVILDIMIPKIDGIEVLKTIRKEGNKIPVIMLTAKSEIDDRVVGLDSGADDYLTKPFASK 106 Query: 107 EILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 E+LAR+ A+ RR +KV N +FSD F L +E +++E Sbjct: 107 ELLARLRALTRRGEQLTENIVKVGNISLNRSSFELFSDSGS-------FRLANKEYQMIE 159 Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 LM N+ + + + I+G +D E NVV HIS LRKKL+ + + R +GY Sbjct: 160 MLMVNQNQLIPTEKFMERIWG-YDSEAEINVVWVHISFLRKKLQQLKANIQIKANRNMGY 218 Query: 219 SID 221 S++ Sbjct: 219 SLE 221 >gi|116333023|ref|YP_794550.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116098370|gb|ABJ63519.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 230 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 6/171 (3%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSG 94 E+L S D ++ L GE L+L IR + P++ ++ ++ L F+ G Sbjct: 40 EFLASQGVFDAIILDLML--PGESGLDLLLHIRNQGVKTPVLILTAKDTIADKLRGFNDG 97 Query: 95 VDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152 DD V KP H E+LAR+ A+ +R S++ G + + + G L R Sbjct: 98 ADDYVTKPFHREELLARMKALLKRTGHLNSSDTIALGQLEINTSKHLATFNGAPLTLKGR 157 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 E +L YL+ N G + K QIF+ ++G FD +VVE ++S LRK+L++ Sbjct: 158 EFDLLAYLVGNPGTIITKEQIFNRLWG-FDSETSLSVVEVYMSNLRKELKH 207 >gi|319784560|ref|YP_004144036.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170448|gb|ADV13986.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 221 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 8/155 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 R ++P++ ++ + D+G DD V KP H E+LAR+ A+ RR +++ Sbjct: 68 RGGRKMPVLILTARDRWSDKVSGIDAGADDYVTKPFHIEEVLARLRALIRRAAGHASSEL 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 GP+R+ + +V G L E R+L YLM + G+ V++T++ +Y FD Sbjct: 128 TCGPLRLDTKASKADVGGVPLKLTSHEFRLLAYLMHHMGEVVSRTELVEHLYDQDFDR-- 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E + +LRK K+G D +++ R +GY + Sbjct: 186 DSNTIEVFVGRLRK----KMGIDMIETVRGMGYRM 216 >gi|259416014|ref|ZP_05739934.1| cell cycle transcriptional regulator CtrA [Silicibacter sp. TrichCH4B] gi|259347453|gb|EEW59230.1| cell cycle transcriptional regulator CtrA [Silicibacter sp. TrichCH4B] Length = 239 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S + + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRLSRI--ETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + +TG I V D + +V+G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSIIKTGKISVNLDAKTVDVEGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +YG DE E +++ I KLRKKL Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201 >gi|197104317|ref|YP_002129694.1| cell cycle transcriptional regulator CtrA [Phenylobacterium zucineum HLK1] gi|196477737|gb|ACG77265.1| cell cycle transcriptional regulator CtrA [Phenylobacterium zucineum HLK1] Length = 231 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL R+ + ++ P++ +S ++T + F G DD + KP H E++AR+ A+ Sbjct: 59 GMDVLRTLRVGKINT--PIMILSGTAEIETKVKTFTGGADDYMTKPFHKDELVARIHAVV 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + +TG I V D + EV G L +E ++LE L +G + K + Sbjct: 117 RRSKGHAQSVIKTGDITVNLDAKTVEVNGIRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +YG DE E +++ I KLRKKL Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201 >gi|99081240|ref|YP_613394.1| two component transcriptional regulator [Ruegeria sp. TM1040] gi|99037520|gb|ABF64132.1| two component transcriptional regulator, winged helix family [Ruegeria sp. TM1040] Length = 239 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S + + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRLSRI--ETPILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + +TG I V D + +V+G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSIIKTGKISVNLDAKTVDVEGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +YG DE E +++ I KLRKKL Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201 >gi|330828633|ref|YP_004391585.1| two-component system response regulator [Aeromonas veronii B565] gi|328803769|gb|AEB48968.1| Two-component system response regulator [Aeromonas veronii B565] Length = 228 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 85/159 (53%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ R Q+P++ ++ +L + D+G DD + KP +E+ AR+ A+ RR K Sbjct: 63 LRKLRREGHQLPVLILTARDALDDRVVGLDAGSDDYMVKPFALQELNARLRALVRRSKGQ 122 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 E G I ++ + + QGE L E ++L+ L++ G+ ++K Q+ ++YG + Sbjct: 123 AQAVLEYGDILIYPESQQVTYQGEAVKLTPHEYKLLQELISQSGRVLSKDQLQQSLYG-W 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE E N VE HI LRKK + L + + R +GY I Sbjct: 182 DEGAESNAVEVHIHHLRKKFYSDL----IRNIRGVGYII 216 >gi|15672984|ref|NP_267158.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|12723949|gb|AAK05100.1|AE006334_6 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|326406546|gb|ADZ63617.1| two-component system regulator [Lactococcus lactis subsp. lactis CV56] Length = 228 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 110/226 (48%), Gaps = 20/226 (8%) Query: 14 GYIALFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAF--------------LIGKG 57 Y L +D SL + L FE++ S+A + +SA+E F +I K Sbjct: 2 SYHVLIVEDEPSLSDYVKKELIFEDYQVSTAFDGLSALEIFETAKPAIDVVLLDWMIPKL 61 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 + + L R+ + P+I ++ + + D+G DD + KP E+LAR+ I+R Sbjct: 62 DGLTVLRRMKKIQPDTPIIFLTACDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFR 121 Query: 118 RLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + S+++ E ++V EV G+ L +RE +L Y + +RG V++ I Sbjct: 122 KWSNSSSKVYELDYLKVDLSAHTTEVAGKTVNLTQREFSLLSYFLEHRGIVVSRADILDD 181 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G+ FD +EN V++++ LR K+ +++ R +GY ++ Sbjct: 182 VWGMDFDG--QENTVDAYVRYLRAKIDLPNHKSLIETVRGIGYRLN 225 >gi|331699380|ref|YP_004335619.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954069|gb|AEA27766.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 229 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 28/224 (12%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ A G S EE+ ++ A D+ ++ L G ++ R +R+ Sbjct: 21 LRKEGFTAAVATTGQS-------ALEEFDRNGA--DIVLLDLMLPGMSGT--DVCRSLRS 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--- 126 S VP+I ++ S + + G DD V KP RE++AR+ A+ RR A Sbjct: 70 RSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGEGGAEAEGG 129 Query: 127 ----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 E GP+R+ D V G PLP +E +LEYL+ N G+ + + Q+ ++G D Sbjct: 130 GGVLEAGPVRMDVDRHVVSVGGADVPLPLKEFDLLEYLLRNVGRVLTRGQLIDRVWG-AD 188 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221 + ++ H+ K+LR+K+ DP + + R LGY D Sbjct: 189 YVGDTKTLDVHV----KRLRSKVEVDPSVPRHLITVRGLGYKFD 228 >gi|254522399|ref|ZP_05134454.1| two-component response regulator [Stenotrophomonas sp. SKA14] gi|219719990|gb|EED38515.1| two-component response regulator [Stenotrophomonas sp. SKA14] Length = 224 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 97/206 (47%), Gaps = 22/206 (10%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPR--------IIRAHSQ-VPLIG 77 ++L+ E ++ A A EA L G + VL LP ++R H+ VP+I Sbjct: 18 SALQRERYVVDLANTLALAREAALYGSHDLVLLDRTLPDGDGLGLIPVLRGHNPGVPIIV 77 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG 137 +S L + D G DD + KP E+ AR+ A RR + P+ + Sbjct: 78 LSALGQLPDRIAGLDEGADDYLAKPFALEELFARIRAAGRR----PGGMQVEPVSIGRLL 133 Query: 138 RDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 DP V G+ LPRRE R+L L G+ V + I A+YG FD+ + N ++S Sbjct: 134 FDPASGEATVGGQRLELPRREIRVLAALARRLGRTVLRESIEMAVYG-FDDGIHSNTLDS 192 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218 H+S+LR+KL + + + R +GY Sbjct: 193 HVSRLRRKLADADAGVEIHAIRGVGY 218 >gi|77463175|ref|YP_352679.1| two component transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126462047|ref|YP_001043161.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|332558049|ref|ZP_08412371.1| two component transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|77387593|gb|ABA78778.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides 2.4.1] gi|126103711|gb|ABN76389.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17029] gi|332275761|gb|EGJ21076.1| two component transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 237 Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 15/193 (7%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74 Y G+DG+ L +++ L D+S G +VL R+ R + P Sbjct: 28 YCTDLGEDGIDLAKL--YDYDLILLDLNLPDMS---------GHEVLRQLRLARVDT--P 74 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRV 133 ++ +S + + F G DD + KP H E++AR+ AI RR K + + TG I V Sbjct: 75 ILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSKGHAQSVIRTGKILV 134 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D + EV+G+ L +E ++LE L +G + K + +YG DE E +++ Sbjct: 135 NLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKIIDVF 193 Query: 194 ISKLRKKLRNKLG 206 I KLRKKL G Sbjct: 194 ICKLRKKLAEATG 206 >gi|325288683|ref|YP_004264864.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324964084|gb|ADY54863.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 229 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 4/163 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR+ S P+I I+ L F+ G DD + KP RE+ ARV A+ +R Sbjct: 69 LCREIRSFSDKPVIFITAKGEEYERLMGFELGADDYIVKPFSPREMTARVKAVLKRANPV 128 Query: 123 NNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 TG I++ +GR+ V GE L +E +L +L+ N+GK +++ I ++ Sbjct: 129 QGEELIHTGQIKINVEGREVSVGGEQINLTPKEFDLLVFLINNKGKVLSREHITRKVWD- 187 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D ++ V++HI KLR+KL K G + + + +GY + N Sbjct: 188 YDYFGDQRTVDTHIKKLREKLGEKAG-NEIKTIWGVGYKFEVN 229 >gi|78044944|ref|YP_360245.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77997059|gb|ABB15958.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 228 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 84/152 (55%), Gaps = 6/152 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 +E+ + IR S VP+I ++ + + G DD V KP RE++ARV A+ RR Sbjct: 61 MEIAKEIRKTSLVPIIMLTARGEEIDKILGLEIGADDYVVKPFSPREVVARVKAVLRRSS 120 Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K +++ + G + + + R+ +V GE L E +L YL+ NRGK +++ Q+ + Sbjct: 121 GIPEKEASSVIKQGILEIHPEAREVKVNGEEVVLTPLEFDLLLYLVTNRGKALSREQLLA 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 ++G +D E V++H+++LR+KL+ + Sbjct: 181 NVWG-YDYFGEARTVDTHVTRLREKLQEAASY 211 >gi|18202894|sp|Q9F868|REGX3_MYCS2 RecName: Full=Sensory transduction protein regX3 gi|9964001|gb|AAG09797.1|AF258346_2 response regulator RegX3 [Mycobacterium smegmatis str. MC2 155] Length = 228 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 109/223 (48%), Gaps = 27/223 (12%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ A DG S E+ +S A D+ ++ L G ++ + +RA Sbjct: 21 LRKEGFEATVVGDGPS-------ALAEFERSGA--DIVLLDLMLPGMSGT--DVCKQLRA 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--- 126 S VP+I ++ S + + G DD V KP RE++AR+ A+ RR +++ Sbjct: 70 RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADNDDAGADD 129 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E GP+R+ + V GE LP +E +LEYLM N G+ + + Q+ ++G D Sbjct: 130 GVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADY 188 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221 + ++ H+ K+LR+K+ DP + + R LGY ++ Sbjct: 189 VGDTKTLDVHV----KRLRSKIEEDPANPVHLVTVRGLGYKLE 227 >gi|328948543|ref|YP_004365880.1| transcriptional regulator [Treponema succinifaciens DSM 2489] gi|328448867|gb|AEB14583.1| two component transcriptional regulator, winged helix family [Treponema succinifaciens DSM 2489] Length = 233 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/234 (28%), Positives = 113/234 (48%), Gaps = 34/234 (14%) Query: 3 VLIDDRALVKD---GYIALFGDDGVSLEGFNSLEF---EEWLQSSARE--DVSAIEAFLI 54 ++++D +L++D GY+ L+G+ +LEF L + RE D++ ++ L Sbjct: 5 IIVEDNSLIRDAVSGYL--------KLDGYKTLEFGGVSGVLDAVKRETCDLAILDVMLP 56 Query: 55 -GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G G L + IRA S +PLI ++ S + F+ G DD + KP +E++ RV Sbjct: 57 DGSG---FALAKEIRAASDIPLIFLTAKDSESDRILGFELGADDYICKPFSAKELVLRVH 113 Query: 114 AIYRRL-------KVSNNRAETGPIRVFSD-GRDP-EVQGEVFPLPRRERRILEYLMANR 164 A+ RR ++ ++G VF D GR V G L E +IL YL +N Sbjct: 114 ALLRRTGKSDGGKSAASGEWQSGNSAVFIDEGRHSVSVDGNPIELTSTEWKILLYLASNT 173 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G+ V++ Q+ F E E +++H++ LR+K+G + + R GY Sbjct: 174 GQVVSREQLLGECLNYFFEG-SERTIDTHMA----NLRSKIGQQWISTVRGFGY 222 >gi|126464554|ref|YP_001045667.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|332560699|ref|ZP_08415017.1| two component transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|126106365|gb|ABN78895.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17029] gi|332274497|gb|EGJ19813.1| two component transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 219 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 9/163 (5%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+ R +RA + +P+I ++ + + ++G DD + KP E+ AR+ A+ RR Sbjct: 60 LDFLRGLRARKETMPVIILTARDRVTERIAGLNAGADDYMVKPFDLSELSARIGAVSRRY 119 Query: 120 KVSNN-RAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R GP+ V +D R +GEV L +RE I E L+ G V+KTQ+ + Sbjct: 120 AGNPSPRLALGPLEVDIADRRIDGPEGEV-TLSQREWAIFEALVKRPGSVVSKTQLEETL 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Y FD VE N +E ++S+LRK KLG D ++++R +GY + Sbjct: 179 YA-FDAEVESNTIEVYVSRLRK----KLGRDRIETRRGMGYRL 216 >gi|300023992|ref|YP_003756603.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299525813|gb|ADJ24282.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 232 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 4/151 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL+ R+ + + P++ +S + + G DD + KP H E++AR+ AI Sbjct: 59 GYEVLKTLRVSKVST--PILILSGLAGIDDKVRGLGFGADDYMTKPFHKDELVARIQAIV 116 Query: 117 RRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + ETG +RV D + +V G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHAQSIIETGDLRVNLDTKTVDVNGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 +YG DE E +++ I KLRKKL+ G Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLQTATG 206 >gi|225028678|ref|ZP_03717870.1| hypothetical protein EUBHAL_02957 [Eubacterium hallii DSM 3353] gi|224953988|gb|EEG35197.1| hypothetical protein EUBHAL_02957 [Eubacterium hallii DSM 3353] Length = 225 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 76/133 (57%), Gaps = 6/133 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149 D+G +D + KP H +E+ AR+ ++ RR V + I+ + R+ +G + PL Sbjct: 91 LDAGANDYMEKPFHIQELEARIRSLTRRKFVQKDICLHCKDIKFDTKKREAYAKGILVPL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRNKLGF 207 R+E ILEYL+ N+G+ V++ ++ ++ D +++ + H+S LRKK ++ LG+ Sbjct: 151 TRKENGILEYLLLNQGRPVSQEELIEHVW---DASIDSFSGSIRVHMSSLRKKFKSVLGY 207 Query: 208 DPVDSKRFLGYSI 220 DP+ +K GY + Sbjct: 208 DPIVNKIGEGYKL 220 >gi|118470709|ref|YP_885340.1| DNA-binding response regulator RegX3 [Mycobacterium smegmatis str. MC2 155] gi|118171996|gb|ABK72892.1| DNA-binding response regulator RegX3 [Mycobacterium smegmatis str. MC2 155] Length = 225 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 109/223 (48%), Gaps = 27/223 (12%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ A DG S E+ +S A D+ ++ L G ++ + +RA Sbjct: 18 LRKEGFEATVVGDGPS-------ALAEFERSGA--DIVLLDLMLPGMSGT--DVCKQLRA 66 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--- 126 S VP+I ++ S + + G DD V KP RE++AR+ A+ RR +++ Sbjct: 67 RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADNDDAGADD 126 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E GP+R+ + V GE LP +E +LEYLM N G+ + + Q+ ++G D Sbjct: 127 GVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADY 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221 + ++ H+ K+LR+K+ DP + + R LGY ++ Sbjct: 186 VGDTKTLDVHV----KRLRSKIEEDPANPVHLVTVRGLGYKLE 224 >gi|110680627|ref|YP_683634.1| two-component response regulator, putative [Roseobacter denitrificans OCh 114] gi|109456743|gb|ABG32948.1| two-component response regulator, putative [Roseobacter denitrificans OCh 114] Length = 225 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 9/149 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ + LP +R VP+I ++ L L D G DD V KP+ E++AR A+ Sbjct: 57 GDGMALLP-TLRRDGTVPVIVLTAREQLTDRLSGLDGGADDYVVKPVEMPELVARCRAVL 115 Query: 117 RRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR +R+ T G + + + V G PL RRE +LE+LM G+ A+ Sbjct: 116 RR---PGDRSGTVLNHGDLALDTAALSVTVAGTGVPLGRREVAVLEHLMRAAGRVSARRV 172 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + A+YG FD+ V N +E+ IS+LR+ L Sbjct: 173 LEEAVYG-FDDEVSPNAIEASISRLRRTL 200 >gi|77465102|ref|YP_354605.1| two component transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77389520|gb|ABA80704.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides 2.4.1] Length = 219 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 90/163 (55%), Gaps = 9/163 (5%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+ R +RA + +P+I ++ + + ++G DD + KP E+ AR+ A+ RR Sbjct: 60 LDFLRGLRARKETMPVIILTARDRVTERIAGLNAGADDYMVKPFDLSELSARIGAVSRRY 119 Query: 120 KVSNN-RAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R GP+ V +D R +GEV L +RE I E L+ G V+KTQ+ + Sbjct: 120 AGNPSPRLALGPLEVDIADRRIDGPEGEV-TLSQREWAIFEALVKRPGSVVSKTQLEETL 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Y FD VE N +E ++S+LRK KLG D ++++R +GY + Sbjct: 179 YA-FDAEVESNTIEVYVSRLRK----KLGRDRIETRRGMGYRL 216 >gi|146277940|ref|YP_001168099.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145556181|gb|ABP70794.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17025] Length = 237 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 4/151 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S + + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRLARVDT--PILILSGADDTENKIKGFGFGADDYMTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + TG I V D + EV+G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHAQSIIRTGKILVNLDAKTVEVEGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 +YG DE E +++ I KLRKKL G Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLAEATG 206 >gi|71906069|ref|YP_283656.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] gi|71845690|gb|AAZ45186.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] Length = 223 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 4/162 (2%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ + +RA +SQ+P++ ++ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLKRLRARNSQLPVLILTALDGTGDRVKGLDLGADDYMVKPFELPELEARVRALTRRS 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + G + GR ++QG+ L RE +LE L++ G+ V+K Q+ + G Sbjct: 120 AGTSPTIQCGALTYDQVGRVAQIQGQTLELSAREVGLLEVLLSRMGRLVSKDQLVDHLCG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E ++ +LRKK+ G + + R LGY ++ Sbjct: 180 -WGEEVSHNAIEVYVHRLRKKIEP--GGVKIATVRGLGYCLE 218 >gi|323342772|ref|ZP_08083004.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463884|gb|EFY09078.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 224 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 3/163 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + IR S VP+I ++ S L + G DD + KP + + +LAR+ ++ RR Sbjct: 63 LAKEIRKISAVPIIVVTSRNSTMDELMSMNLGADDFITKPYNLQILLARLQSVLRRAYEK 122 Query: 123 NNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N+ A T V D V+ G+ L + E RIL YL+AN+G V++ + ++ Sbjct: 123 NDNAVTVLRGVELDTPRGMVRYMGQEQELTKNELRILSYLIANKGSIVSRQDLMQYLWNT 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D V++N + +I++LRKKL D +++KR +GY+I N Sbjct: 183 -DWFVDDNTLTVNINRLRKKLEEIGIVDFIETKRGMGYTIHEN 224 >gi|264680342|ref|YP_003280252.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|299532693|ref|ZP_07046081.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|262210858|gb|ACY34956.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|298719328|gb|EFI60297.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 239 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 106/216 (49%), Gaps = 19/216 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +V G D G +++ S E + + DV+ I+ L G L Sbjct: 3 LLLVEDDVMVASGIKLGLSDAGYAVDWVGSAERALEVLAQEAFDVAVIDIGL--PGINGL 60 Query: 62 ELPRIIRAH----SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 EL R +R+ +P++ ++ +LQ + D G DD + KP E+LAR+ A+ R Sbjct: 61 ELTRRLRSSDVESKAMPVLILTARDALQDRVQGLDWGADDYMVKPFELPELLARLRALMR 120 Query: 118 RLKVSNNRAET-GPIRVFSDGR---------DPEVQGEVFP--LPRRERRILEYLMANRG 165 R + + + G I + + GR + E +G++ P L RE +LEYL+ N Sbjct: 121 RSQAATSAVLNFGCIELDTAGRRAGARQLPQEGETEGKLLPIDLGPREWTVLEYLLLNAP 180 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 K +K ++ A+ G +D + N VE ++S+LR KL Sbjct: 181 KPASKEKLLQALTG-WDREITPNAVEVYVSRLRSKL 215 >gi|120401846|ref|YP_951675.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119954664|gb|ABM11669.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 228 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 16/166 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LK 120 +R+ S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 67 LRSRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGSDADDAG 126 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + E GP+R+ + V G+ LP +E +LEYLM N G+ + + Q+ ++G Sbjct: 127 IGDGVLEAGPVRMDVERHVVSVNGQSITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG- 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221 D + ++ H+ K+LR+K+ DP + + R LGY ++ Sbjct: 186 ADYVGDTKTLDVHV----KRLRSKIEADPANPVHLVTVRGLGYKLE 227 >gi|160899673|ref|YP_001565255.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160365257|gb|ABX36870.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 220 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 15/223 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EK 59 +L++D ALV G A G+ L+GF Q+ A S +A ++ G E Sbjct: 4 LLVEDNALVASGVRA-----GLQLQGFGVDTVASAGQADAAIRSSHFDACVLDLGLPDED 58 Query: 60 VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L L R QVP++ ++ ++ ++ +G DD + KP E+ AR+ A+ RR Sbjct: 59 GLSLLARWRGQGLQVPVLVLTARDAVSQRIEGLQTGADDYLVKPFDLHELAARLHALLRR 118 Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S + E G +R+ + QG L RRE +L L+ + G+ ++ Q+ ++ Sbjct: 119 AAGRSVDWIELGEVRINPAAGHIQRQGRTVELSRREWSLLRALLQSPGRILSTEQLRDSL 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 YG + + VE N V H+ LR+ KLG + V++ R GY + Sbjct: 179 YG-YSQDVESNAVNVHVHHLRR----KLGHELVETVRGEGYRL 216 >gi|119489672|ref|ZP_01622431.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119454409|gb|EAW35558.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 226 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 103/202 (50%), Gaps = 18/202 (8%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 RAL ++GY D+G + G+N L + D+ ++ L + +E+ + + Sbjct: 18 RALTREGYAVDVADEGAT--GYN-------LATQHHYDLLILDWML--PHQSGVEMCQQL 66 Query: 68 R-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R ++Q+P++ ++ +L ++ D+G DD + KP RE+LARV A+ RR + A Sbjct: 67 RLKNNQIPILFLTAKDTLNDRVEGLDAGADDYLVKPFELRELLARVRALLRRPPTLESPA 126 Query: 127 ETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +++F+ D E Q G + L +E ++LEY M + G+ + QI+ ++ Sbjct: 127 ANSRLQIFNLELDIENQLAYRNGRIIELSEKECQLLEYFMRHSGQLLTHQQIYQHLWADS 186 Query: 182 DEAVEENVVESHISKLRKKLRN 203 D+ NV+ + I LR+K+ + Sbjct: 187 DQP-SSNVLAAQIRLLRRKIED 207 >gi|325568393|ref|ZP_08144760.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|325158162|gb|EGC70315.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 224 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 77/150 (51%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN-NRAETG 129 Q P++ ++ L+ + F G DD + KP + E+L R+ A+ +R L + N N E Sbjct: 72 QTPVLILTAKDGLEDKVTGFQKGADDYLTKPFYREELLMRIKALLKRSLGLFNENTLEYN 131 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + QGE+ P+ +E +L Y + NR + K QIF I+G FD V Sbjct: 132 GLLCNLGTNEVSYQGELLPIQGKEFELLLYFLQNRNIILTKEQIFDRIWG-FDSETTLTV 190 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++S LRK LR + G D + + R +GY Sbjct: 191 VEVYMSNLRKHLR-QTGIDKEIRTLRNVGY 219 >gi|212716668|ref|ZP_03324796.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM 16992] gi|212660372|gb|EEB20947.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM 16992] Length = 234 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 19/173 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S+VP+I ++ + + + G DD + KP RE+LARV A+ RR ++ Sbjct: 63 LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLRRNQMV 122 Query: 123 NNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + AE+ G I + + V+GE P +E +LEYLM N+G+ + + Q+ Sbjct: 123 ADAAESSDDDIPLICGDISMKIGQHEVMVRGENVFFPLKEFELLEYLMQNKGRVMTRHQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 I+G D + ++ H+ K++R+K+ DP K R LGY ID Sbjct: 183 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 230 >gi|160894924|ref|ZP_02075698.1| hypothetical protein CLOL250_02474 [Clostridium sp. L2-50] gi|156863355|gb|EDO56786.1| hypothetical protein CLOL250_02474 [Clostridium sp. L2-50] Length = 226 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 4/148 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G E+ R IRA S VP+I ++ + L +D G DD V KP E+ A++ + Sbjct: 62 GADGFEICRAIRAKSYVPIIFLTARGREEDRLYGYDLGCDDYVVKPFSMAELQAKIQSFL 121 Query: 117 RRLK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR K N + G I+++ D E GE L +E +L+YLM ++G V + + Sbjct: 122 RRSKGLWTKNQVIQVGDIKMYPDRLLVEAAGEEVRLAPKEYAMLKYLMEHKGMIVTRDDM 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G +D + VV++H+ KLRK L Sbjct: 182 LVRLWG-YDYDGGDRVVDNHVKKLRKAL 208 >gi|326383367|ref|ZP_08205054.1| putative OmpR family two-component response regulator [Gordonia neofelifaecis NRRL B-59395] gi|326197773|gb|EGD54960.1| putative OmpR family two-component response regulator [Gordonia neofelifaecis NRRL B-59395] Length = 224 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 14/216 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R LV +G++ DG++ LQ + E + ++ G E+ R + Sbjct: 18 RTLVAEGWVVDTATDGLT-----------GLQKALSEPFDVVVLDIMMPGRNGYEVVRDL 66 Query: 68 R-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R A P++ ++ D FD G DD + KP ++AR+ A+ RR Sbjct: 67 RRAQVWTPVLMLTAKDGEYDQADAFDFGADDYLTKPYSAVVLVARLRALARRGAPERPAV 126 Query: 127 ETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 T +G+ L RRE +LE+LM N+G+ V KTQI +++ + + Sbjct: 127 MTAGSLSLDPSAHVVKRGDTELSLTRREFALLEFLMRNKGQAVTKTQIVDSVWDV-NYTG 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +ENVVE +IS LRK++ G + + R +GY +D Sbjct: 186 DENVVEVYISYLRKRIDAPFGCKSIQTVRGVGYRLD 221 >gi|146302027|ref|YP_001196618.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146156445|gb|ABQ07299.1| two component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 223 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 100/182 (54%), Gaps = 12/182 (6%) Query: 45 DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D+ ++ L G G ++++L R + H+ P++ +S + + DSG DD + KP Sbjct: 46 DIILMDIMLPGIDGIQLVKLMRFKKIHT--PILILSALSNTDDKVTALDSGADDYLVKPF 103 Query: 104 HHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159 H +E+++RV A+ RR K + N ET G + + D ++ L RE ++L Y Sbjct: 104 HFKELISRVNALTRRTKFNYNEPETLYTCGTLTINPDEHKVTENDKLIDLSPREYKLLLY 163 Query: 160 LMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L+ NR K +++TQI +A++G+ +D NVV+ +IS LR K+ + F + + + +GY Sbjct: 164 LLENRNKVMSRTQILTAVWGINYDNNT--NVVDVYISYLRNKIEHNHKF--IHTIKGIGY 219 Query: 219 SI 220 + Sbjct: 220 ML 221 >gi|33594405|ref|NP_882049.1| response regulator protein [Bordetella pertussis Tohama I] gi|33597124|ref|NP_884767.1| response regulator protein [Bordetella parapertussis 12822] gi|33600968|ref|NP_888528.1| response regulator protein [Bordetella bronchiseptica RB50] gi|5777378|emb|CAB53386.1| transcriptional regulatory protein, putative [Bordetella pertussis] gi|33564480|emb|CAE43793.1| response regulator protein [Bordetella pertussis Tohama I] gi|33566575|emb|CAE37832.1| response regulator protein [Bordetella parapertussis] gi|33575403|emb|CAE32480.1| response regulator protein [Bordetella bronchiseptica RB50] gi|332383816|gb|AEE68663.1| response regulator protein [Bordetella pertussis CS] Length = 223 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 4/152 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETG 129 +QVP++ ++ L + D+G DD V KP E+ ARV A+ RR + + E G Sbjct: 71 NQVPVLILTARDGLDDRVAGLDAGADDYVTKPFDLPELAARVRALGRRRSGQAQPQIEVG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P+ + GR+ G L RE +LE LMA G+ V K QI +++ +D EN Sbjct: 131 PLVFDTVGREVRANGTRLALSVRELSVLEMLMARSGRVVTKRQIVNSLSA-WDADFSENA 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE ++ +LRK+L + + R GY +D Sbjct: 190 VEVYVYRLRKRLEGSGA--SIQTVRGFGYMLD 219 >gi|317498542|ref|ZP_07956836.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894235|gb|EFV16423.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 226 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 92/178 (51%), Gaps = 18/178 (10%) Query: 42 AREDVSAIEAFLIGKGEKVL------------ELPRIIRAHSQVPLIGISDYPSLQTTLD 89 A++ A++ F KG +L E+ + IR S+VP+I ++ Q L Sbjct: 33 AQDGEEAVDTFYSTKGINLLVLDVMMPKMDGWEVVKEIRKVSKVPIIMLTAKDQEQDELL 92 Query: 90 FFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFP 148 F+ GVD+ ++KP + ++ARV AI RR ++ + E G I + G + G+ Sbjct: 93 GFELGVDEYISKPFSPKILVARVEAILRRTVQTEGEQIEAGGIVMDVGGHHVSIDGKSIN 152 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L +E +L+Y M+N+G+ + + I + ++ +D + +++H+ KKLRNKLG Sbjct: 153 LSYKEFELLQYFMSNQGRALTRESILNQVWN-YDYFGDARTIDTHV----KKLRNKLG 205 >gi|312878480|ref|ZP_07738370.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311794740|gb|EFR11179.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 231 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 4/164 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR HS VPLI ++ + + DSG DD V KP E+LAR+ A R+ K Sbjct: 63 IEICRKIRQHSNVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSK 122 Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N E + + + R + ++ L +RE +LEYL+ N+G + + QI + Sbjct: 123 QLNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTREQILENV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G + + NVV+ +I LR K+ + + + R +GY + Sbjct: 183 WG-YSYMGDTNVVDVYIRYLRSKVDDGFKTKLIHTVRGVGYKCE 225 >gi|310658178|ref|YP_003935899.1| DNA-binding response regulator in two-component regulatory system with baes [Clostridium sticklandii DSM 519] gi|308824956|emb|CBH20994.1| DNA-binding response regulator in two-component regulatory system with BaeS [Clostridium sticklandii] Length = 227 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 18/209 (8%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFL--------IGKGEKVLELPRIIRAHSQVPLIGI 78 EG+N+ FE SA +SAI F+ + +G L+L + IR S+VP+I + Sbjct: 24 EGYNTTTFE-----SADGVLSAIREFMPDLLVLDIMMQGLDGLDLCKEIRKISEVPIIFV 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVF 134 S + + G DD + KP RE++ R+ I +R S+ + T + ++ Sbjct: 79 SARSDELDRILGLELGADDYLAKPFSPRELVVRIKTILKRTTKSSEHNDEILKTKDLEIY 138 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 R + G+ PL +E +LE+LM N +++ QI +I+G + + N V+ I Sbjct: 139 VQRRIVKCMGQDIPLTIKEYEVLEFLMKNINLPLSREQIIESIWGYDYDGYDRN-VDDTI 197 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +LRKKL+ + + GY ID N Sbjct: 198 KRLRKKLKTAKSRVVIKTVWGYGYRIDDN 226 >gi|295394466|ref|ZP_06804689.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972645|gb|EFG48497.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 226 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 13/207 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGE 58 +L++D + D L G EG++ + LQ+ A D + L+ G Sbjct: 4 ILLVEDEESISDPLAYLLGK-----EGYDVTVAADGLQALAEFDSHGADLVLLDLMLPGA 58 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R +RA S+VP+I ++ S + + G DD V KP RE+LAR+ A+ RR Sbjct: 59 SGTEVCRQLRAKSKVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVMRR 118 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + E G +R+ + V+G LP +E +LE L+ N G+ + + Q+ Sbjct: 119 NTESSDIDDGVLEAGGVRIDVERHVASVRGSELALPLKEFELLEMLVRNAGRVMTRGQLI 178 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 I+G D + ++ H+ +LR K+ Sbjct: 179 DRIWG-QDYVGDTKTLDVHVKRLRAKI 204 >gi|217077821|ref|YP_002335539.1| response regulator receiver [Thermosipho africanus TCF52B] gi|217037676|gb|ACJ76198.1| response regulator receiver [Thermosipho africanus TCF52B] Length = 217 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 6/147 (4%) Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRV 133 +I ++ + L+ F+SG DD V KP E+ ARV AI RR ++ N+ + + + Sbjct: 75 IIMLTALSEKKNKLEGFESGADDYVVKPFDFEELFARVKAIARRKNITLNDEIKIKDLII 134 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 R+ +G+ L + E +L YL+ N G+ V+K +I A++G+ E EN VE + Sbjct: 135 NISKREVIFKGKPINLSKTEFDLLAYLVKNAGRVVSKEEILDAVWGISYEG-SENTVEVY 193 Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+ LRKKL + D + + R +GY+I Sbjct: 194 INYLRKKLSS----DIIKTVRGIGYTI 216 >gi|77460461|ref|YP_349968.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384464|gb|ABA75977.1| two-component system, transcriptional regulatory protein PhoP [Pseudomonas fluorescens Pf0-1] Length = 225 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 107/219 (48%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLQTRLTESGHVVESVANAEEALYQTGQFNFDLAVIDLGL--PGMSGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R+ + P++ ++ + Q ++ +G DD + KP E+ AR+ A+ RR Sbjct: 61 DLIRQLRSGGKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFTQSTIVAGPLLLDLNRKQATLDEQPLALTAYEYRILEYLMRHHQQVVPKDRLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL GF P+D+ R LGY Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLEGPAGFKPIDTVRGLGY 218 >gi|312878605|ref|ZP_07738465.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311794618|gb|EFR11087.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 231 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 4/164 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR HS VPLI ++ + + DSG DD V KP E+LAR+ A R+ K Sbjct: 63 IEICRKIRQHSNVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSK 122 Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N E + + + R + ++ L +RE +LEYL+ N+G + + QI + Sbjct: 123 QLNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTRDQILENV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G + + NVV+ +I LR K+ + + + R +GY + Sbjct: 183 WG-YSYMGDTNVVDVYIRYLRSKVDDGFKTKLIHTVRGVGYKCE 225 >gi|226305111|ref|YP_002765069.1| two-component response regulator RegX3 [Rhodococcus erythropolis PR4] gi|229490687|ref|ZP_04384525.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|226184226|dbj|BAH32330.1| two-component response regulator RegX3 [Rhodococcus erythropolis PR4] gi|229322507|gb|EEN88290.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 229 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 100/210 (47%), Gaps = 20/210 (9%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + + + A D S + L+ G ++ + +R+ S VP+I ++ S Sbjct: 24 EGFETTIVNDGPSALAEFDRSGADIVLLDLMLPGMSGTDVCKALRSRSGVPVIMVTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNRAETGPIRVFSD 136 + + G DD V KP RE++AR+ A+ RR L N E GP+R+ + Sbjct: 84 EIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGVENEADLASDNGVLEAGPVRMDVE 143 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 +V G LP +E +LEYL+ N G+ + + Q+ ++G D + ++ H+ Sbjct: 144 RHVVQVAGNPVTLPLKEFDLLEYLLRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV-- 200 Query: 197 LRKKLRNKLGFDPVDSK-----RFLGYSID 221 K+LR+K+ DP + R LGY ++ Sbjct: 201 --KRLRSKIESDPAKPEHLVTVRGLGYKLE 228 >gi|167765588|ref|ZP_02437652.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1] gi|167712773|gb|EDS23352.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1] Length = 226 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 81/146 (55%), Gaps = 6/146 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 E+ + IR S+VP+I ++ Q L F+ GVD+ ++KP + ++ARV AI RR ++ Sbjct: 65 EVVKEIRKVSKVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAILRRTVQ 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E G I + G + G+ L +E +L+Y M+N+G+ + + I + ++ Sbjct: 125 TEGEQIEAGGIVMDVGGHHVSIDGKSINLSYKEFELLQYFMSNQGRALTRESILNQVWN- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLG 206 +D + +++H+ KKLRNKLG Sbjct: 184 YDYFGDARTIDTHV----KKLRNKLG 205 >gi|320106273|ref|YP_004181863.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319924794|gb|ADV81869.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 227 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 15/225 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVL 61 +L++D + + + + G++++ + L A D ++ L GK G++VL Sbjct: 4 LLVEDEIRLAENIVDALRETGLAVDHAADGRLGQELALQANYDAIVLDLMLPGKSGQEVL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R A P++ ++ ++ + +SG DD ++KP E+LARV A+ RR Sbjct: 64 RGLR--HAKISTPILILTAQEGKESVIQLLNSGADDYLSKPFDLGELLARVKALIRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDPEVQ------GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + P+ FSD +Q G L E RILEYL+ V+K ++ Sbjct: 119 --GKGTADPVLRFSDVEVDTIQQMVTRKGNRLELSPTEYRILEYLVHRPRAVVSKRELLE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y FD NV+E HIS LR+KL G +++ R GY + Sbjct: 177 HLYD-FDWEHHSNVIEVHISNLRRKLNVTNGGPVIETLRHRGYRL 220 >gi|66046938|ref|YP_236779.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|63257645|gb|AAY38741.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|330897073|gb|EGH28553.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330941394|gb|EGH44220.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 225 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 109/219 (49%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + + D++ I+ L G G L Sbjct: 3 LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGG--L 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +RA + P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR Sbjct: 61 DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL + + F P+++ R +GY Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGY 218 >gi|114569034|ref|YP_755714.1| two component transcriptional regulator [Maricaulis maris MCS10] gi|114339496|gb|ABI64776.1| two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 229 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 6/168 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R +R + VP+I ++ + D+G DD V KP E+ AR+ A+ R Sbjct: 62 IEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLR 121 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R++ ++ + E G I + + L E R+L+YLM + G+ ++ Q+ Sbjct: 122 RIRPGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 A++G D VE V+ H+ +LRK L NK DP+ + R GY+ D N Sbjct: 182 AVWG-SDVYVEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAFDVN 228 >gi|85709585|ref|ZP_01040650.1| DNA-binding response regulator CtrA [Erythrobacter sp. NAP1] gi|85688295|gb|EAQ28299.1| DNA-binding response regulator CtrA [Erythrobacter sp. NAP1] Length = 231 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 2/145 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L ++ A Q P++ +S + + + F G DD V KP H E++AR+ A+ RR K Sbjct: 63 LKKLRVAKVQTPVLILSGIAEMDSKIRSFGFGADDYVTKPFHREELVARIHAVVRRSKGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + TG + V D + EV L +E +LE L +G + K + +YG Sbjct: 123 SQSVIRTGKLAVNLDAKTVEVDSARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYGGM 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG 206 DE E +++ I KLRKKL + G Sbjct: 183 DEP-ELKIIDVFICKLRKKLSHACG 206 >gi|254439177|ref|ZP_05052671.1| response regulator receiver domain protein [Octadecabacter antarcticus 307] gi|198254623|gb|EDY78937.1| response regulator receiver domain protein [Octadecabacter antarcticus 307] Length = 239 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 4/153 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S ++ L F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRLSRI--ETPILILSGEDGTESKLKGFGFGADDYMTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + +TG I V D + EV L +E ++LE L +G + K + Sbjct: 117 RRSKGHAQSVIKTGVIAVNLDAKTVEVDSSPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 +YG DE E +++ I KLRKKL G D Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSEATGGD 208 >gi|194365171|ref|YP_002027781.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347975|gb|ACF51098.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 223 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 87/165 (52%), Gaps = 4/165 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G + R +R + + +I ++ +L ++ D G DD + KP+ E++AR+ A Sbjct: 57 GDGAGFVATARSLRPN--LAVIMLTAKGTLSDKVEGLDVGADDYLVKPVAIEELMARIRA 114 Query: 115 IYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR + G + + +V+G+ LPRR+ +L+ L +G+ V ++ + Sbjct: 115 VSRRPSAMVTPSLRLGRLEFDFESLQAQVEGQPLALPRRQVLVLQALAMRQGRTVTRSAL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +A+YG FD+ ++ N +++HISKLRK L+ + R +GY Sbjct: 175 EAAVYG-FDDEIQSNALDAHISKLRKALQQAGAGVEIHVIRGVGY 218 >gi|254459879|ref|ZP_05073295.1| DNA-binding response regulator CtrA [Rhodobacterales bacterium HTCC2083] gi|206676468|gb|EDZ40955.1| DNA-binding response regulator CtrA [Rhodobacteraceae bacterium HTCC2083] Length = 238 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 4/153 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S ++ + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRLARI--ETPILILSGSDDTESKIKGFGFGADDYLTKPFHRDELIARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + TG I V D + EV+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSIIHTGKIAVNLDAKTVEVENATVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 +YG DE + +++ I KLRKKL G D Sbjct: 177 HLYGGMDEP-KLKIIDVFICKLRKKLCEATGED 208 >gi|16127265|ref|NP_421829.1| cell cycle transcriptional regulator CtrA [Caulobacter crescentus CB15] gi|221236066|ref|YP_002518503.1| cell cycle response regulator CtrA [Caulobacter crescentus NA1000] gi|295690880|ref|YP_003594573.1| winged helix family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|239977105|sp|B8H358|CTRA_CAUCN RecName: Full=Cell cycle transcriptional regulator CtrA; AltName: Full=Response regulator SokA gi|239977106|sp|P0CAW8|CTRA_CAUCR RecName: Full=Cell cycle transcriptional regulator CtrA; AltName: Full=Response regulator SokA gi|1151107|gb|AAA93080.1| cell cycle transcriptional regulator [Caulobacter crescentus CB15] gi|13424677|gb|AAK24997.1| cell cycle transcriptional regulator CtrA [Caulobacter crescentus CB15] gi|220965239|gb|ACL96595.1| cell cycle response regulator ctrA [Caulobacter crescentus NA1000] gi|295432783|gb|ADG11955.1| two component transcriptional regulator, winged helix family [Caulobacter segnis ATCC 21756] Length = 231 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 3/143 (2%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +R A P++ +S + T + F G DD + KP H E++AR+ A+ RR Sbjct: 60 IDVLRTLRVAKINTPIMILSGSSEIDTKVKTFAGGADDYMTKPFHKDEMIARIHAVVRRS 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + + +TG I V D + EV G L +E ++LE L +G + K + +Y Sbjct: 120 KGHAQSVIKTGDIVVNLDAKTVEVNGNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G DE E +++ I KLRKKL Sbjct: 180 GGMDEP-ELKIIDVFICKLRKKL 201 >gi|208779553|ref|ZP_03246898.1| response regulator receiver domain protein [Francisella novicida FTG] gi|208744514|gb|EDZ90813.1| response regulator receiver domain protein [Francisella novicida FTG] Length = 228 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 96/199 (48%), Gaps = 18/199 (9%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL K+G I DG + + F E L D+S I G LE+ R IR Sbjct: 19 ALQKEGLIVNLVSDGEAAQTF----IESGLYDIVVLDIS----MPIKTG---LEVLRNIR 67 Query: 69 AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 +VP+I ++ L+ + D G DD + KP +E++AR+ AI RR+ + ++ Sbjct: 68 NRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRIDTRSGKSV 127 Query: 128 TGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 IR +P + G + P+ ++E +L L+ N G+ V KTQ+ +Y D Sbjct: 128 NEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLEEVYS-TD 186 Query: 183 EAVEENVVESHISKLRKKL 201 + ++ N +E H+ LRKK+ Sbjct: 187 KEMDTNTLEVHMHNLRKKI 205 >gi|289424086|ref|ZP_06425872.1| two-component response regulator [Peptostreptococcus anaerobius 653-L] gi|289155511|gb|EFD04190.1| two-component response regulator [Peptostreptococcus anaerobius 653-L] Length = 229 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 86/153 (56%), Gaps = 7/153 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNNRAETG 129 P++ ++ SL ++ F G +D + KP + E++AR AI R R+K N E Sbjct: 78 TPILILTAKESLDDKMEAFTLGANDYLTKPFYMDELVARTFAILRTNGRIK-DNKYLEFK 136 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 +++ S+ + + E L ++ ++LEY + N+G + K QI+ I+G+ +A E + Sbjct: 137 DLKIDSEKKAVFIHDEEIELQNKQFKLLEYFVLNKGSILLKEQIYDRIWGIDSDATIE-I 195 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 VE ++S LRKKL +K +D + +KR +GY +D Sbjct: 196 VEVYVSNLRKKL-SKFDYDKYIKTKRKVGYILD 227 >gi|114707433|ref|ZP_01440329.1| Response regulator receiver:Transcriptional regulatory protein, C terminal:Sugar transporter superfamily [Fulvimarina pelagi HTCC2506] gi|114536992|gb|EAU40120.1| Response regulator receiver:Transcriptional regulatory protein, C terminal:Sugar transporter superfamily [Fulvimarina pelagi HTCC2506] Length = 219 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 12/182 (6%) Query: 45 DVSAIEAFLIGKGEKVLE----LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100 D +A ++ G V++ L R R +VP++ ++ + D+G DD V Sbjct: 41 DTEPYDAIVLDVGLPVMDGISVLERWRRDQKKVPVLILTARDRWSDKVAGIDAGADDYVT 100 Query: 101 KPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159 KP H E+LARV A+ RR + + E GP+R+ + V G L E R+L+Y Sbjct: 101 KPFHIEEVLARVRALIRRAAGHATSELECGPLRLDTRTARVSVDGTPLKLTSHEYRLLDY 160 Query: 160 LMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 LM ++ V+++++ +Y FD + N +E + +LRK K+G D +++ R GY Sbjct: 161 LMHHQDSVVSRSELIEHLYDQDFDR--DSNTIEVFVGRLRK----KIGIDLIETIRGQGY 214 Query: 219 SI 220 + Sbjct: 215 RL 216 >gi|325521131|gb|EGD00037.1| OmpR family two-component system response regulator [Burkholderia sp. TJI49] Length = 223 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 60 LEVLRRLRARRNPVPVLILTAHGSVEDRVKGLDLGADDYLAKPFELTELEARARALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++ GP+ S R + E PL RER +LE L+ G+ + K + I+ Sbjct: 120 LGHEHSCVACGPLAYDSVDRSFRLADEALPLTPRERSVLEVLILRNGRAINKETLSEKIF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LRKKL N G V + R LGY ++ Sbjct: 180 GL-DESVNPDAIEIYVHRLRKKLENS-GVAIV-TLRGLGYLLE 219 >gi|227509360|ref|ZP_03939409.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227512243|ref|ZP_03942292.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227084521|gb|EEI19833.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227191072|gb|EEI71139.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 230 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 3/152 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRA 126 +H +P++ ++ +L + F+ G DD + KP H E+L RV A+ +R ++N+ Sbjct: 72 SHLSMPVLILTAKDTLDDKVHGFELGADDYLTKPFHREELLMRVKALLKRSGHLGNDNQM 131 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 P V R V+ + L +E +L Y + N + K QIF ++G F+ Sbjct: 132 VVEPFTVDLSNRTVTVRDQQLELNGKEFDLLVYFLQNPDTIITKEQIFDRLWG-FESETA 190 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +VVE ++S LRKK++ P+ + R +GY Sbjct: 191 ISVVEVYMSNLRKKIKTATDLKPIKTLRNVGY 222 >gi|164688787|ref|ZP_02212815.1| hypothetical protein CLOBAR_02434 [Clostridium bartlettii DSM 16795] gi|164602263|gb|EDQ95728.1| hypothetical protein CLOBAR_02434 [Clostridium bartlettii DSM 16795] Length = 231 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 86/157 (54%), Gaps = 14/157 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R SQ+P+I IS + T +D G DD + KP E++AR+ + RR + Sbjct: 62 EILKEVRQFSQIPIIIISAKDMISTKIDLLKLGADDYITKPFDLGEVIARIESNLRRYYI 121 Query: 122 SNNRAETG--PIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 SN+ +++ P+ + D ++ ++ + L +E ILE L+ N+ K +K + Sbjct: 122 SNHVSDSDILPLLKYKDITLDENNKEIKINDCLLYLTAKEYMILELLIKNQNKVFSKANL 181 Query: 174 FSAIYGLFDEAV-EENVVESHISKLRKKLRNKLGFDP 209 + +I+ +E + ++N +++HIS +R KL+ F+P Sbjct: 182 YESIW--HEEYIGDDNAIKTHISNIRSKLKK---FNP 213 >gi|254489830|ref|ZP_05103025.1| response regulator receiver domain protein [Methylophaga thiooxidans DMS010] gi|224464915|gb|EEF81169.1| response regulator receiver domain protein [Methylophaga thiooxydans DMS010] Length = 219 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 10/166 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ VL R I A ++P++ ++ SLQ +D D G DD + KP E+LAR+ Sbjct: 59 GQDVLRAIRKINA--ELPVLILTARSSLQDKVDGLDGGADDYLAKPFDTDELLARLRVFE 116 Query: 117 RRLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RRL S AE G + + + + +V G L RRE +L+ LM N G+ + + Sbjct: 117 RRLS-SLKHAELVVGNVAMDTKAQQVKVNGADLELSRREYMLLKTLMENVGRVQTRDSLE 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +Y DE + N +E HI LRKKL + + + R +GY+I Sbjct: 176 TKLYSWGDE-IASNAIEVHIHHLRKKLPEQF----IRTVRGVGYTI 216 >gi|227524026|ref|ZP_03954075.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227088765|gb|EEI24077.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 230 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 3/152 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRA 126 +H +P++ ++ +L + F+ G DD + KP H E+L RV A+ +R ++N+ Sbjct: 72 SHLSMPVLILTAKDTLDDKVHGFELGADDYLTKPFHREELLMRVKALLKRSGHLGNDNQM 131 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 P V R V+ + L +E +L Y + N + K QIF ++G F+ Sbjct: 132 VVEPFTVDLSNRTVTVRDQQLELNGKEFDLLVYFLQNPDTIITKEQIFDRLWG-FESETA 190 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +VVE ++S LRKK++ P+ + R +GY Sbjct: 191 ISVVEVYMSNLRKKIKTATDLKPIKTLRNVGY 222 >gi|221065046|ref|ZP_03541151.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220710069|gb|EED65437.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 239 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 105/216 (48%), Gaps = 19/216 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +V G D G +++ S E + + DV+ I+ L G L Sbjct: 3 LLLVEDDVMVASGIKLGLSDAGYAVDWVGSAERALEVLAQEAFDVAVIDIGL--PGINGL 60 Query: 62 ELPRIIRAH----SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 EL R +R+ +P++ ++ +LQ + D G DD + KP E+LAR+ A+ R Sbjct: 61 ELTRRLRSSDVESKAMPVLILTARDALQDRVQGLDWGADDYMVKPFELPELLARLRALMR 120 Query: 118 RLKVSNNRAET-GPIRVFSDGR---------DPEVQGEVFP--LPRRERRILEYLMANRG 165 R + + + G I + + GR + E +G + P L RE +LEYL+ N Sbjct: 121 RSQAATSAVLNFGCIELDTAGRRAGARQLPQEGETEGRLLPIDLGPREWTVLEYLLLNAP 180 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 K +K ++ A+ G +D + N VE ++S+LR KL Sbjct: 181 KPASKEKLLQALTG-WDREITPNAVEVYVSRLRSKL 215 >gi|164688154|ref|ZP_02212182.1| hypothetical protein CLOBAR_01799 [Clostridium bartlettii DSM 16795] gi|164602567|gb|EDQ96032.1| hypothetical protein CLOBAR_01799 [Clostridium bartlettii DSM 16795] Length = 223 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 13/156 (8%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ ++ SL + F+ G +D + KP + E++AR+ AI R +N + + Sbjct: 72 TPVLILTAKESLNDKVSAFEIGANDYLTKPFYMEELVARIYAILR----TNGKMQAKNTI 127 Query: 133 VFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 F D R ++ E L ++ +LEYL+ N+G + K QI+ ++G+ D V Sbjct: 128 DFKDLHLDLNKRRVFIKDEEIELQNKQFNLLEYLLLNKGSILLKEQIYDRVWGI-DSDVT 186 Query: 187 ENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 +VE +IS LRKKL +K G+D + +KR +GY D Sbjct: 187 IEIVEVYISHLRKKL-SKYGYDKCIKTKRKVGYMFD 221 >gi|302060525|ref|ZP_07252066.1| transcriptional regulatory protein PhoP, putative [Pseudomonas syringae pv. tomato K40] Length = 225 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 109/219 (49%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + + D++ I+ L G G L Sbjct: 3 LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGG--L 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +RA + P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR Sbjct: 61 DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALGDQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL + + F P+++ R +GY Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGY 218 >gi|221369103|ref|YP_002520199.1| Two component transcriptional regulator, winged helix family precursor [Rhodobacter sphaeroides KD131] gi|221162155|gb|ACM03126.1| Two component transcriptional regulator, winged helix family precursor [Rhodobacter sphaeroides KD131] Length = 219 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+ R +RA + +P+I ++ + + ++G DD + KP E+ AR+ A+ RR Sbjct: 60 LDFLRGLRARKETMPVIILTARDRVTERIAGLNAGADDYMVKPFDLSELSARIGAVSRRY 119 Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + R GP+ + R E G L +RE I E L+ G V+KTQ+ +Y Sbjct: 120 AGNPSPRLALGPLEIDIADRRIEGPGGEVTLSQREWAIFEALVKRPGSVVSKTQLEETLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD VE N +E ++S+LRK KLG D ++++R +GY + Sbjct: 180 A-FDAEVESNTIEVYVSRLRK----KLGRDRIETRRGMGYRL 216 >gi|300741844|ref|ZP_07071865.1| DNA-binding response regulator [Rothia dentocariosa M567] gi|300381029|gb|EFJ77591.1| DNA-binding response regulator [Rothia dentocariosa M567] Length = 231 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 103/211 (48%), Gaps = 13/211 (6%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L ++GY A+F ++G S FE +++ S D+ ++ L GK +E+ IR+ Sbjct: 25 LAQEGYNAVFCENG-------SRAFETFMRHSP--DLVLLDLMLPGKSG--IEVCEQIRS 73 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 S VP+I ++ + + ++G DD + KP H E++AR+ A R + G Sbjct: 74 SSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHLELMARIRARLRPRESRQLVVRVG 133 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + DGR + +G P+ E +L L+ G+ +++ ++ ++G D V +++ Sbjct: 134 DTIMDMDGRTLKYKGAEVPMTPLEFDLLAALVRRPGQAMSRQELLETVWGYSD--VSDSL 191 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V H+ +LR K + + + R +GY + Sbjct: 192 VNVHVQRLRAKFTDIGAEQVIQTVRGVGYKV 222 >gi|330980166|gb|EGH78348.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 225 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 108/219 (49%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + + D++ I+ L G G L Sbjct: 3 LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGG--L 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +RA + P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR Sbjct: 61 DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL + F P+++ R +GY Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDGSVAFKPIETVRGMGY 218 >gi|285017066|ref|YP_003374777.1| two-component system regulatory protein phop [Xanthomonas albilineans GPE PC73] gi|283472284|emb|CBA14790.1| probable two-component system regulatory protein phop [Xanthomonas albilineans] Length = 227 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A +++ A +G +++ E ++ DV I+ L + Sbjct: 3 ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGL--PKMSGM 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + +R + P++ ++ S Q ++ G DD + KP H E+LARV A+ RR Sbjct: 61 ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S E GP+ + + V G L E ++LEYLM + G+ V+K + IY Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVSGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180 Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD + NV+E I +LRKKL P+++ R GY Sbjct: 181 QDFDR--DSNVLEVFIGRLRKKLDPDGELKPIETVRGRGY 218 >gi|119776435|ref|YP_929175.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119768935|gb|ABM01506.1| two component transcriptional regulator, winged helix family [Shewanella amazonensis SB2B] Length = 224 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 12/156 (7%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----E 127 + P++ ++ S + ++ D+G DD + KP H RE+ +R+ A+ RR S +A E Sbjct: 72 EFPILILTARDSWEDKVEGLDAGADDYLTKPFHPRELASRLKALIRR---SAGKASPVIE 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 GP+ + + + + GE L E R+L++LM +RG+ +KT + IY D ++ Sbjct: 129 NGPVTLNTASGEVLLNGERVSLSASEFRLLQFLMMHRGEVQSKTMLTEHIYDQ-DFDLDS 187 Query: 188 NVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSID 221 NV+E I +LRKKL N+LG +++ R GY ++ Sbjct: 188 NVIEVFIRRLRKKLDPDNELGL--IETLRGQGYRLN 221 >gi|291457143|ref|ZP_06596533.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM 20213] gi|291380978|gb|EFE88496.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM 20213] Length = 234 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 19/173 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + + Sbjct: 63 LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQAT 122 Query: 123 NNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + T G I + V+GE P +E +LEYLM N+G+ + + Q+ Sbjct: 123 AQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 I+G D + ++ H+ K++R+K+ DP K R LGY ID Sbjct: 183 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 230 >gi|83859270|ref|ZP_00952791.1| cell cycle transcriptional regulator CtrA [Oceanicaulis alexandrii HTCC2633] gi|83852717|gb|EAP90570.1| cell cycle transcriptional regulator CtrA [Oceanicaulis alexandrii HTCC2633] Length = 233 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 4/153 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL+ R+ A P++ +S + + SG DD + KP H E++AR+ A+ Sbjct: 59 GFDVLKTLRV--AKVDTPILILSGNADIDNKVRGLGSGADDYMTKPFHKEELIARIHAVV 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + +TG I V D + EV G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSIIKTGDIAVNLDAKTVEVNGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 +YG DE E +++ I KLRKKL + D Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLASATSGD 208 >gi|240173231|ref|ZP_04751889.1| two-component regulator receiver domain-containing protein [Mycobacterium kansasii ATCC 12478] Length = 244 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 5/178 (2%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 R D+ ++ L G+ +L +I+A + ++ I+ L L D G DD V KP Sbjct: 70 RPDLVVLDVMLPGR--DGFDLINVIQAWGDISIVLITARDGLPDRLRGLDGGADDYVVKP 127 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+++RV A+ RR + G + + DG G L E R+L++L+ Sbjct: 128 FELAELVSRVGAVLRRRGRLPRVVQVGDLILDVDGGVAARDGHQLELTATELRLLDFLVQ 187 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 RG+ V+ QI +A++G +A + N+V+ H+S LR+KL G + + R LGY + Sbjct: 188 QRGRIVSARQILNAVWGY--DAYDTNLVQVHVSSLRRKLEAH-GPRILHTVRGLGYRL 242 >gi|317179202|dbj|BAJ56990.1| putative transcriptional regulator [Helicobacter pylori F30] Length = 223 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 32/231 (13%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55 M +L+ ++ V G I + G++++GF SLE E+L D+ + ++ Sbjct: 1 MRILLIEKNSVLGGEI----EKGLNVKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 + + RI HS + ++ SD P+ + + F+ G DD + KP +R I A VA I Sbjct: 52 DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEIHAFEQGADDYIAKP--YRSIKALVARI 109 Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RL+ +N E G + + D GR+ EV+G+ F +L +L +R + Sbjct: 110 ETRLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRNQI 162 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+K Q+ AI+ E V NV+E I+++R+K+ LG V++ R GY Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 212 >gi|239622508|ref|ZP_04665539.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133342|ref|YP_004000681.1| response regulator of two-component system [Bifidobacterium longum subsp. longum BBMN68] gi|322688478|ref|YP_004208212.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322690488|ref|YP_004220058.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|239514505|gb|EEQ54372.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517414|emb|CBK71030.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum subsp. longum F8] gi|311772562|gb|ADQ02050.1| Response Regulator of two-component system [Bifidobacterium longum subsp. longum BBMN68] gi|320455344|dbj|BAJ65966.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320459814|dbj|BAJ70434.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 234 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 19/173 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + + Sbjct: 63 LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQAT 122 Query: 123 NNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + T G I + V+GE P +E +LEYLM N+G+ + + Q+ Sbjct: 123 AQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 I+G D + ++ H+ K++R+K+ DP K R LGY ID Sbjct: 183 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 230 >gi|144899128|emb|CAM75992.1| two-component transcriptional regulator FeuP, winged helix family [Magnetospirillum gryphiswaldense MSR-1] Length = 222 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 8/160 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L R A +P++ ++ + F++G DD V KP EI+ R+ A+ RR Sbjct: 63 LSRWREAGRDLPVLILTARGRWSEKMQGFNAGADDYVTKPFEMDEIVYRLRALIRRASGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 S GP+R+ ++G + G+V L +E RIL YLM + GK V++T++ +Y Sbjct: 123 SQPELACGPVRLDTNGGRVSLDGQVLQLTAQEFRILSYLMHHPGKVVSRTELMEHVYDRN 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + NV+E I +LRK K+G + + + R GY + Sbjct: 183 FDS--DSNVLEVMIGRLRK----KIGAEMIQTVRGQGYVL 216 >gi|28868885|ref|NP_791504.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv. tomato str. DC3000] gi|213971922|ref|ZP_03400022.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv. tomato T1] gi|301384491|ref|ZP_07232909.1| transcriptional regulatory protein PhoP, putative [Pseudomonas syringae pv. tomato Max13] gi|302134652|ref|ZP_07260642.1| transcriptional regulatory protein PhoP, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852124|gb|AAO55199.1| transcriptional regulatory protein PhoP, putative [Pseudomonas syringae pv. tomato str. DC3000] gi|213923347|gb|EEB56942.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv. tomato T1] gi|330877107|gb|EGH11256.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966567|gb|EGH66827.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016773|gb|EGH96829.1| transcriptional regulatory protein PhoP, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 225 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 109/219 (49%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + + D++ I+ L G G L Sbjct: 3 LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGG--L 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +RA + P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR Sbjct: 61 DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALGEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL + + F P+++ R +GY Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGY 218 >gi|21233365|ref|NP_639282.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21244740|ref|NP_644322.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|58580046|ref|YP_199062.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|66770328|ref|YP_245090.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|78049672|ref|YP_365847.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84622042|ref|YP_449414.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166713914|ref|ZP_02245121.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|188993525|ref|YP_001905535.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. B100] gi|289666417|ref|ZP_06487998.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669255|ref|ZP_06490330.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|294626708|ref|ZP_06705303.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666629|ref|ZP_06731867.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325923104|ref|ZP_08184797.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325928269|ref|ZP_08189472.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|21110433|gb|AAM38858.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21115200|gb|AAM43164.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|58424640|gb|AAW73677.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|66575660|gb|AAY51070.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|78038102|emb|CAJ25847.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84365982|dbj|BAE67140.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|105872979|gb|ABF74730.1| PhoP [Xanthomonas oryzae pv. oryzae] gi|167735285|emb|CAP53499.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris] gi|292598956|gb|EFF43098.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603596|gb|EFF47009.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325541359|gb|EGD12898.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325546419|gb|EGD17580.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 227 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A +++ A +G +++ E ++ DV I+ L + Sbjct: 3 ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGL--PKMSGM 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + +R + P++ ++ S Q ++ G DD + KP H E+LARV A+ RR Sbjct: 61 ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S E GP+ + + V G L E ++LEYLM + G+ V+K + IY Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180 Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD + NV+E I +LRKKL P+++ R GY Sbjct: 181 QDFDR--DSNVLEVFIGRLRKKLDPDGELKPIETVRGRGY 218 >gi|190572351|ref|YP_001970196.1| putative two-component transcriptional regulator response regulatory protein [Stenotrophomonas maltophilia K279a] gi|194364007|ref|YP_002026617.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|254520920|ref|ZP_05132975.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|99908241|gb|ABF68763.1| PhoP [Stenotrophomonas maltophilia] gi|190010273|emb|CAQ43881.1| putative two-component transcriptional regulator response regulatory protein [Stenotrophomonas maltophilia K279a] gi|194346811|gb|ACF49934.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] gi|219718511|gb|EED37036.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 227 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A +++ A +G +++ E ++ DV I+ L + Sbjct: 3 ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGL--PKMSGM 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + +R + P++ ++ S Q ++ G DD + KP H E+LARV A+ RR Sbjct: 61 ELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S E GP+ + + V G L E ++LEYLM + G+ V+K + IY Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVAGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180 Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD + NV+E I +LRKKL P+++ R GY Sbjct: 181 QDFDR--DSNVLEVFIGRLRKKLDPDGELKPIETVRGRGY 218 >gi|89054996|ref|YP_510447.1| two component transcriptional regulator [Jannaschia sp. CCS1] gi|88864545|gb|ABD55422.1| two component transcriptional regulator, winged helix family [Jannaschia sp. CCS1] Length = 238 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 4/153 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R R + + ++ D P + L F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRHLRTARVDTPILILSGLDDP--ENKLKGFGFGADDYLTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + +TG I V D + +V G L +E ++LE L +G + K + Sbjct: 117 RRSKGHAQSVIDTGRISVNLDAKTVDVAGTPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 +YG DE E +++ I KLRKKL G D Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSEATGGD 208 >gi|254779094|ref|YP_003057199.1| putative two-component response regulator [Helicobacter pylori B38] gi|254001005|emb|CAX28949.1| Putative two-component response regulator [Helicobacter pylori B38] Length = 223 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 32/231 (13%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55 M VL+ ++ V G I + G++++GF SLE E+L D+ + ++ Sbjct: 1 MRVLLIEKNSVLGGEI----EKGLNVKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 + + RI HS + ++ SD P+ + + F+ G DD + KP +R I A VA I Sbjct: 52 DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHVFEQGADDYIAKP--YRSIKALVARI 109 Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RL+ +N E G + + D GR+ EV+G+ F +L +L +R + Sbjct: 110 EARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQI 162 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+K Q+ AI+ E V NV+E I+++R+K+ LG V++ R GY Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 212 >gi|88798651|ref|ZP_01114235.1| Two component Transcriptional regulator, Winged helix family protein [Reinekea sp. MED297] gi|88778751|gb|EAR09942.1| Two component Transcriptional regulator, Winged helix family protein [Reinekea sp. MED297] Length = 224 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 87/163 (53%), Gaps = 7/163 (4%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + + R +RA ++ +P++ +S + ++ +G DD + KP E+LARV + RR Sbjct: 60 MTILRTLRASNKTLPVLILSALSDVDQRVEGLSAGADDYLTKPFAFAELLARVQVLLRRP 119 Query: 120 KVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++ ETG IR+ + VQG RE R+LEYLM + G+ V++T + Sbjct: 120 GADSRQSTVLETGAIRLDLSRQKVWVQGREIAFQPREFRLLEYLMRHAGQVVSRTMLLEN 179 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ FD + NVV+ HIS+LR+KL + + + R GY Sbjct: 180 VWDYHFDP--QTNVVDVHISRLRQKLDHGQETSVIRTVRGAGY 220 >gi|239828010|ref|YP_002950634.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239808303|gb|ACS25368.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 234 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 75/135 (55%), Gaps = 9/135 (6%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-----GPIRVFSDGRDPEVQGEVFP 148 G DD + KP RE++ARV AI RR ++SN ET G +++ D + +GE Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRTQLSNGEMETKEIVIGDLKILPDSYEAYFRGERLE 155 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L +E +L YL ++G+ + + Q+ S+++ +D A + +V+ HIS LR+K+ Sbjct: 156 LTPKEFELLVYLAKHKGRVLTRDQLLSSVWN-YDFAGDTRIVDVHISHLREKIEQDTK-K 213 Query: 209 PVDSK--RFLGYSID 221 P+ K R LGY ++ Sbjct: 214 PIYIKTIRGLGYKLE 228 >gi|332283869|ref|YP_004415780.1| two-component response regulatory protein [Pusillimonas sp. T7-7] gi|330427822|gb|AEC19156.1| two-component response regulatory protein [Pusillimonas sp. T7-7] Length = 224 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 5/167 (2%) Query: 57 GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G L++ +RA QVP++ ++ ++ + D+G DD V KP E+ ARV A Sbjct: 56 GHSGLDILAKLRAEGEQVPVLILTARDGVEDRVAGLDAGADDYVTKPFDLTELAARVRAF 115 Query: 116 -YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + E GP+ + GR+ GE L RE +LE LMA G+ V K QI Sbjct: 116 GRRRTGQAQPFIEAGPLLFDTVGREVRGNGERLSLSVREISVLEMLMARAGRVVTKRQIV 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++ +D EN VE ++ +LRK+L + + R GY +D Sbjct: 176 NSLSA-WDADFSENAVEVYVYRLRKRLEGTGA--SIQTVRGFGYLLD 219 >gi|187777156|ref|ZP_02993629.1| hypothetical protein CLOSPO_00701 [Clostridium sporogenes ATCC 15579] gi|187774084|gb|EDU37886.1| hypothetical protein CLOSPO_00701 [Clostridium sporogenes ATCC 15579] Length = 233 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 54/164 (32%), Positives = 88/164 (53%), Gaps = 12/164 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN-- 123 IR ++ P+I +S S +T L+ + G DD + KP E++ARV + RR L+ S Sbjct: 70 IRKITKAPIIIVSAKTSKKTKLELLEKGADDFICKPFDPDEVVARVNSNLRRYLEFSTDE 129 Query: 124 -NRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 NR+ I + ++ ++ +V V L RE +LE L+ N K +K IF +I+G Sbjct: 130 ENRSNILSYKEITLNTESKEVKVGQVVVTLTAREFAVLELLLTNPNKVYSKANIFESIWG 189 Query: 180 LFDEAV-EENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSI 220 +E + E+N V H+S+LR KL N G D +++ +GY + Sbjct: 190 --EEFLGEDNTVNVHVSRLRNKLSRANNNGEDYIETVWAMGYRL 231 >gi|153813960|ref|ZP_01966628.1| hypothetical protein RUMTOR_00167 [Ruminococcus torques ATCC 27756] gi|317501488|ref|ZP_07959686.1| winged helix family Two component transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|331088040|ref|ZP_08336961.1| hypothetical protein HMPREF1025_00544 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848356|gb|EDK25274.1| hypothetical protein RUMTOR_00167 [Ruminococcus torques ATCC 27756] gi|316897117|gb|EFV19190.1| winged helix family Two component transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|330408996|gb|EGG88455.1| hypothetical protein HMPREF1025_00544 [Lachnospiraceae bacterium 3_1_46FAA] Length = 224 Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 8/169 (4%) Query: 57 GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 GE LE+ + ++ S+ +P+I ++ S + DSG DD V KP E+++R+ Sbjct: 55 GEDGLEILKKLKCSSKTKSIPVIMVTAKGSEYDKVIGLDSGADDYVTKPFGMMELVSRIK 114 Query: 114 AIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A+ RR K S R E + + + V G PL +E +LE LM N G + + Sbjct: 115 AVLRRSKGSQERENPEIQGVHIDVKKHEVTVDGRTVPLTLKEFELLEKLMRNEGIVLTRD 174 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Q+ + I+G +D E V+ HI LR+KL K + + + R +GY I Sbjct: 175 QLLTEIWG-YDFDGETRTVDVHIRTLRQKLGEK--GEIIQTVRGVGYRI 220 >gi|332653992|ref|ZP_08419736.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] gi|332517078|gb|EGJ46683.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] Length = 224 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 97/201 (48%), Gaps = 13/201 (6%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIGISD 80 L +E + + A + S +E L GK + VL E+ R +R S +P+I ++ Sbjct: 22 LRYEGYEVTKAFDGRSGLEQALSGKYDLVLLDIMLPQLSGMEVLRRLRRESDLPVIMLTA 81 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRD 139 S+ + DSG DD + KP E+LAR+ A R+ V T G + + + Sbjct: 82 RDSVIDKVSGLDSGADDYITKPFAIEELLARIRAALRKRAVHTGSILTAGELAMDVERHQ 141 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 V+G+ L ++E +L L+ N+G+ + + + +++G FD E N V+ +I LR Sbjct: 142 VSVRGQSVELTKKEFDLLHQLLENKGRVLTREALLDSVWG-FDFVGETNSVDVYIRFLRS 200 Query: 200 KLRNKLGFDPVDSKRFLGYSI 220 K+ G + + R +GY I Sbjct: 201 KIDEAFGIKLIHTVRGVGYVI 221 >gi|289677021|ref|ZP_06497911.1| two component transcriptional regulator [Pseudomonas syringae pv. syringae FF5] Length = 227 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 9/220 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D L+ G +A G++L+ S + +A+ DV ++ L E + Sbjct: 4 LLCEDDELIASGIVAGLHAQGLNLDRVGSASAAHAILDAAQFDVMILDLGL--PDEDGIS 61 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R+ +P++ ++ + + +G DD + KP RE+ AR+ + RR+ Sbjct: 62 LLRSLRSRGHNIPVLILTARDDVDDRVKGLHAGADDYMVKPFDLRELFARLHTLVRRVAG 121 Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N E G + R+ + G L RRE+ +L L+ N G+ ++ Q+ ++YG Sbjct: 122 RTVNHIEHGILTYDPSTRETWLSGTAIDLSRREQAVLLALLNNPGRVLSLEQLKDSVYGF 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE VE N + HI LR+ KLG +++ R GY + Sbjct: 182 TDE-VESNALNVHIFHLRR----KLGVQIIETVRGSGYRL 216 >gi|46190748|ref|ZP_00121040.2| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum DJO10A] gi|189439936|ref|YP_001955017.1| putative response regulator [Bifidobacterium longum DJO10A] gi|189428371|gb|ACD98519.1| Putative response regulator [Bifidobacterium longum DJO10A] Length = 234 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 19/173 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + + Sbjct: 63 LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQAA 122 Query: 123 NNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + T G I + V+GE P +E +LEYLM N+G+ + + Q+ Sbjct: 123 AQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 I+G D + ++ H+ K++R+K+ DP K R LGY ID Sbjct: 183 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 230 >gi|300312688|ref|YP_003776780.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain-containing protein [Herbaspirillum seropedicae SmR1] gi|300075473|gb|ADJ64872.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 77/141 (54%), Gaps = 4/141 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ H+ VP++ ++ S+ ++ +G DD + KP RE++AR+ + RR + Sbjct: 63 LRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRR-QTP 121 Query: 123 NNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + AE G + S+ R V G LP RE +LE L+ +GK V+KT + ++ L Sbjct: 122 DKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFSL 181 Query: 181 FDEAVEENVVESHISKLRKKL 201 +E + +E +IS+LRKKL Sbjct: 182 SEEP-SADAIEVYISRLRKKL 201 >gi|213691278|ref|YP_002321864.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522739|gb|ACJ51486.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457342|dbj|BAJ67963.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 256 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 19/173 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + + Sbjct: 85 LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQAT 144 Query: 123 NNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + T G I + V+GE P +E +LEYLM N+G+ + + Q+ Sbjct: 145 AQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQL 204 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 I+G D + ++ H+ K++R+K+ DP K R LGY ID Sbjct: 205 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 252 >gi|183982311|ref|YP_001850602.1| two-component regulator receiver domain-containing protein [Mycobacterium marinum M] gi|183175637|gb|ACC40747.1| two-component regulator - receiver domain [Mycobacterium marinum M] Length = 247 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 103/219 (47%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ D G + + E E + R D+ ++ L G+ Sbjct: 29 VLVVEDSETIREMVNEALADVGYHTDTRSDGEGLERVLQGLRPDLVVLDVMLPGR--DGF 86 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +IR + ++ I+ L L D G DD V KP E+++RV A+ RR Sbjct: 87 ALIDVIREWGDIGIVLITARDGLPDRLRGLDGGADDYVVKPFELAELVSRVGAVLRRRGR 146 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + + S+ G L E R+L++L+ RG+ V+ TQI +A++G Sbjct: 147 LPRVVQVGDLMLDSEAGVAARDGHQLDLTATELRLLDFLVQQRGRIVSATQILNAVWGY- 205 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +A + N+V+ H+S LR+KL G V + R +GY + Sbjct: 206 -DAYDANLVQVHVSSLRRKLEAH-GPRIVQTVRGIGYRL 242 >gi|241668018|ref|ZP_04755596.1| response regulator receiver protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876552|ref|ZP_05249262.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842573|gb|EET20987.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 229 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + L +I+R + P+I +S S + + SG DD + KP E++ RV +Y+R Sbjct: 64 ISLLKILRKQNVTTPVIILSALDSTENKIQGLTSGSDDYLTKPFSIDELMVRVNILYKRT 123 Query: 120 K----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K +++ G I + + E+ L +RE ++L L+ ++ + V+KT I Sbjct: 124 KQIAEAQSHKLTCGDIILDELAHEVRRNDELILLQQREYKVLHLLLKHKNEVVSKTMILK 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVE HIS+LR KL DP+ + R GY I Sbjct: 184 EVWD-YDFDPQTNVVEVHISRLRNKLTENGLPDPIKTIRGFGYVI 227 >gi|89255956|ref|YP_513318.1| two-component response regulator [Francisella tularensis subsp. holarctica LVS] gi|115314439|ref|YP_763162.1| two-component response regulator [Francisella tularensis subsp. holarctica OSU18] gi|156501952|ref|YP_001428017.1| two-component response regulator [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954599|ref|ZP_06559220.1| two-component response regulator [Francisella tularensis subsp. holarctica URFT1] gi|295311942|ref|ZP_06802766.1| two-component response regulator [Francisella tularensis subsp. holarctica URFT1] gi|89143787|emb|CAJ78992.1| Two-component response regulator [Francisella tularensis subsp. holarctica LVS] gi|115129338|gb|ABI82525.1| two-component response regulator [Francisella tularensis subsp. holarctica OSU18] gi|156252555|gb|ABU61061.1| Two-component response regulator [Francisella tularensis subsp. holarctica FTNF002-00] Length = 228 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 7/147 (4%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IR +VP+I ++ L+ + D G DD + KP +E++AR+ AI RR+ Sbjct: 60 LEVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRI 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ IR +P + G + P+ ++E +L L+ N G+ V KTQ+ Sbjct: 120 DTRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLL 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 IY D+ ++ N +E H+ LRKK+ Sbjct: 180 EEIYS-TDKEMDTNTLEVHMHNLRKKI 205 >gi|120553228|ref|YP_957579.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120323077|gb|ABM17392.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 227 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 11/165 (6%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L++ R +R ++P+I ++ L L D+G DD + KP E+ AR+ A+ RR Sbjct: 60 LDIVRQVREQGVELPIIILTARSELTEKLQGLDAGADDYLTKPFAMSELKARIRAVTRRR 119 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +VS + G + + D +V E F LPR E +IL YLM + + + ++ Sbjct: 120 SGTRVSG--LKVGRLVLDPDSAQLQVGTETFVLPRSELQILHYLMRHPDQVATRRRLEEQ 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +YG +D+ E N +E H+ LR+ +LG + + R +GY +D Sbjct: 178 LYG-WDQGAESNALEVHVHHLRR----RLGKQAIRTVRGVGYMLD 217 >gi|73541789|ref|YP_296309.1| two component transcriptional regulator [Ralstonia eutropha JMP134] gi|72119202|gb|AAZ61465.1| two component transcriptional regulator, winged helix family [Ralstonia eutropha JMP134] Length = 226 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 81/150 (54%), Gaps = 4/150 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P++ ++ + S++ + D G DD + KP E+ AR A+ RR + + GP+ Sbjct: 73 MPVLILTAHGSVEDRVRGLDLGADDYLAKPFDLSELEARARALIRRSHGHESTQLSCGPL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 S R + GE+ L RRER +LE L+ GK V K+ + I+G+ DE+V + +E Sbjct: 133 HYDSVSRAFTIDGELLQLTRRERSVLEVLLLRNGKAVNKSALSEKIFGI-DESVNPDAIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +I +LRKKL G V + R LGY I+ Sbjct: 192 IYIHRLRKKLDGS-GVAIV-TLRGLGYLIE 219 >gi|56708575|ref|YP_170471.1| two component response regulator [Francisella tularensis subsp. tularensis SCHU S4] gi|110671046|ref|YP_667603.1| two component response regulator [Francisella tularensis subsp. tularensis FSC198] gi|118498024|ref|YP_899074.1| two-component response regulator [Francisella tularensis subsp. novicida U112] gi|134301473|ref|YP_001121441.1| two component response regulator [Francisella tularensis subsp. tularensis WY96-3418] gi|187931193|ref|YP_001891177.1| two component response regulator [Francisella tularensis subsp. mediasiatica FSC147] gi|194323249|ref|ZP_03057033.1| two component response regulator [Francisella tularensis subsp. novicida FTE] gi|224457753|ref|ZP_03666226.1| two component response regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|254371203|ref|ZP_04987205.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254373380|ref|ZP_04988868.1| hypothetical protein FTCG_00968 [Francisella tularensis subsp. novicida GA99-3549] gi|254875432|ref|ZP_05248142.1| two component system response regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|54112897|gb|AAV29082.1| NT02FT1880 [synthetic construct] gi|56605067|emb|CAG46176.1| two component response regulator [Francisella tularensis subsp. tularensis SCHU S4] gi|110321379|emb|CAL09559.1| two component response regulator [Francisella tularensis subsp. tularensis FSC198] gi|118423930|gb|ABK90320.1| two-component response regulator [Francisella novicida U112] gi|134049250|gb|ABO46321.1| two component response regulator [Francisella tularensis subsp. tularensis WY96-3418] gi|151569443|gb|EDN35097.1| hypothetical protein FTBG_00969 [Francisella tularensis subsp. tularensis FSC033] gi|151571106|gb|EDN36760.1| hypothetical protein FTCG_00968 [Francisella novicida GA99-3549] gi|187712102|gb|ACD30399.1| two component response regulator [Francisella tularensis subsp. mediasiatica FSC147] gi|194322613|gb|EDX20093.1| two component response regulator [Francisella tularensis subsp. novicida FTE] gi|254841431|gb|EET19867.1| two component system response regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|282159799|gb|ADA79190.1| two component response regulator [Francisella tularensis subsp. tularensis NE061598] gi|332678746|gb|AEE87875.1| response regulator in two-component regulatory system with PhoQ [Francisella cf. novicida Fx1] Length = 229 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + L +I+R + P+I +S S + ++ SG DD + KP E++ RV +Y+R Sbjct: 64 ISLLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRT 123 Query: 120 K----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K ++ G I + + E+ L +RE ++L L+ ++ + V+KT I Sbjct: 124 KQITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILK 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVE HIS+LR KL DP+ + R GY I Sbjct: 184 EVWD-YDFDPQTNVVEVHISRLRNKLTEGGLSDPIKTIRGFGYVI 227 >gi|326789756|ref|YP_004307577.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326540520|gb|ADZ82379.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 217 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 1/136 (0%) Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +I+ +Q P I ++ SLQ+ + F G DD + KP E+LARV AI RR + ++ Sbjct: 63 VIKQVNQTPTIFLTAKNSLQSRIQGFSLGADDYITKPFEMLELLARVEAILRRTQKASKY 122 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E +++ D G++ +E +LE L+ NR +++ ++ ++G +D Sbjct: 123 FEIRNVKIDFDSHQVFYNGQLVDFTPKEYNLLEVLINNRNIALSRERLLELVWG-YDFEG 181 Query: 186 EENVVESHISKLRKKL 201 + V+ HI KLRKKL Sbjct: 182 DTRTVDVHIQKLRKKL 197 >gi|228912374|ref|ZP_04076064.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 200] gi|228847229|gb|EEM92193.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 200] Length = 214 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 13/166 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ ++IR+ S +P+I ++ Q + FD G+DD + KP ++ RV A+ RR Sbjct: 56 FEVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRR-- 113 Query: 121 VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 SNN++ + V SD V PL +E IL+ L+ N K + + I Sbjct: 114 -SNNQSTDNHFVFRELHVDSDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRENIVE 172 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G ++ A + ++++H+ +RK KL + + + +GY ID Sbjct: 173 KIWG-YEYAGDTRMIDTHMKNIRK----KLDIPYIKTVKGIGYKID 213 >gi|325914534|ref|ZP_08176878.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325539304|gb|EGD10956.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 227 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 5/161 (3%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +EL + +R + P++ ++ S Q ++ G DD + KP H E+LARV A+ RR Sbjct: 60 MELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRA 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S E GP+ + + V G L E ++LEYLM + G+ V+K + IY Sbjct: 120 AGWSKPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIY 179 Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD + NV+E I +LRKKL P+++ R GY Sbjct: 180 QQDFDR--DSNVLEVFIGRLRKKLDPDGELKPIETVRGRGY 218 >gi|208779566|ref|ZP_03246911.1| two component response regulator [Francisella novicida FTG] gi|208744527|gb|EDZ90826.1| two component response regulator [Francisella novicida FTG] Length = 229 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + L +I+R + P+I +S S + ++ SG DD + KP E++ RV +Y+R Sbjct: 64 ISLLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRT 123 Query: 120 K----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K ++ G I + + E+ L +RE ++L L+ ++ + V+KT I Sbjct: 124 KQITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILK 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVE HIS+LR KL DP+ + R GY I Sbjct: 184 EVWD-YDFDPQTNVVEVHISRLRNKLTEGGLSDPIKTIRGFGYVI 227 >gi|260576790|ref|ZP_05844775.1| two component transcriptional regulator, winged helix family [Rhodobacter sp. SW2] gi|259021042|gb|EEW24353.1| two component transcriptional regulator, winged helix family [Rhodobacter sp. SW2] Length = 237 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 15/193 (7%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74 Y G+DG+ L +++ L D+S G +VL R+ R + P Sbjct: 28 YCTDLGEDGIDLAKL--YDYDLILLDLNLPDMS---------GHEVLRQLRLARV--ETP 74 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRV 133 ++ ++ + + F G DD + KP H E++AR+ AI RR K + + TG + V Sbjct: 75 ILILTGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRSKGHAQSVIRTGKVAV 134 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D + +V G+ L +E ++LE L +G + K + +YG DE E +++ Sbjct: 135 NLDAKTVDVDGKTVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKIIDVF 193 Query: 194 ISKLRKKLRNKLG 206 I KLRKKL G Sbjct: 194 ICKLRKKLAEATG 206 >gi|254374844|ref|ZP_04990325.1| two component response regulator [Francisella novicida GA99-3548] gi|151572563|gb|EDN38217.1| two component response regulator [Francisella novicida GA99-3548] Length = 229 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + L +I+R + P+I +S S + ++ SG DD + KP E++ RV +Y+R Sbjct: 64 ISLLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFSIDELIIRVNILYKRT 123 Query: 120 K----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K ++ G I + + E+ L +RE ++L L+ ++ + V+KT I Sbjct: 124 KQITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLLLKHKNEVVSKTMILK 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVE HIS+LR KL DP+ + R GY I Sbjct: 184 EVWD-YDFDPQTNVVEVHISRLRNKLTEGGLSDPIKTIRGFGYVI 227 >gi|118617161|ref|YP_905493.1| two component regulator receiver domain-containing protein [Mycobacterium ulcerans Agy99] gi|118569271|gb|ABL04022.1| two component regulator - receiver domain [Mycobacterium ulcerans Agy99] Length = 247 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 91/187 (48%), Gaps = 6/187 (3%) Query: 34 FEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDS 93 EE LQ R D+ ++ L G+ L +IR + ++ I+ L L D Sbjct: 62 LEEVLQG-LRPDLVVLDVMLPGR--DGFALIDVIREWGDIGIVLITARDGLPDRLRGLDG 118 Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153 G DD KP E+++RV A+ RR + G + + S+ G L E Sbjct: 119 GADDYAVKPFELAELVSRVGAVLRRRGRLPRVVQVGDLMLDSEAGVAARDGHQLDLTATE 178 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 R+L++L+ RG+ V+ TQI +A++G +A + N+V+ H+S LR+KL G V + Sbjct: 179 LRLLDFLVQQRGRIVSATQILNAVWGY--DAYDANLVQVHVSSLRRKLEAH-GPRIVQTV 235 Query: 214 RFLGYSI 220 R +GY + Sbjct: 236 RGIGYRL 242 >gi|227819642|ref|YP_002823613.1| two-component response regulator [Sinorhizobium fredii NGR234] gi|227338641|gb|ACP22860.1| putative two-component response regulator [Sinorhizobium fredii NGR234] Length = 224 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 88/164 (53%), Gaps = 11/164 (6%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+L R +R H+ +P++ I+ S+ + D+G DD + KP HHRE+L+R A+ RR Sbjct: 60 LDLLRWMRQEHAGLPVLVITARGSVDERVQGLDAGADDYLVKPFHHRELLSRCRAMLRR- 118 Query: 120 KVSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A E G +R + +G + LP RER ++E LM G+ V K ++ Sbjct: 119 ---NPHAIQPVLEAGALRFDPATAELTCEGAMIALPPRERSLIEILMREVGRVVPKRRLE 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +A+ + + + N +E +S++RK+L+ +++ R +GY Sbjct: 176 TALSE-YGQELSSNALELAVSRVRKRLQPLDTGVQIETVRGIGY 218 >gi|118587742|ref|ZP_01545152.1| probable transcription regulator protein [Stappia aggregata IAM 12614] gi|118439364|gb|EAV45995.1| probable transcription regulator protein [Stappia aggregata IAM 12614] Length = 237 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 10/133 (7%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRV-FSDGRDPEVQGEVFP 148 D+G DD V KP H E+LARV A+ RR ++N G +R+ GR V G Sbjct: 106 IDAGADDYVAKPFHMEEVLARVRALVRRAAGHASNELTCGAVRLDLRSGR-VTVDGSAVK 164 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGF 207 L E R+L YL+ ++GK +++T++ +Y FD + N VE + +LRK K+G Sbjct: 165 LTSHEYRLLSYLLHHQGKVISRTELTEHLYDQDFDR--DSNTVEVFVGRLRK----KIGS 218 Query: 208 DPVDSKRFLGYSI 220 D +++ R LGY + Sbjct: 219 DMIETIRGLGYRL 231 >gi|296453514|ref|YP_003660657.1| winged helix family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296182945|gb|ADG99826.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. longum JDM301] Length = 256 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 19/173 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + + Sbjct: 85 LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQAT 144 Query: 123 NNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + T G I + V+GE P +E +LEYLM N+G+ + + Q+ Sbjct: 145 AQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQL 204 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 I+G D + ++ H+ K++R+K+ DP K R LGY ID Sbjct: 205 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 252 >gi|254419082|ref|ZP_05032806.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] gi|196185259|gb|EDX80235.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] Length = 233 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R P++ +S ++T + F G DD + KP H E++AR A+ RR Sbjct: 60 LEVLRQLRVGKINTPVMILSGSHEIETKVKTFGGGADDYLTKPFHKDELIARTHAVVRRS 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + TG I V D + EV G L +E ++LE L +G + K + +Y Sbjct: 120 KGHAQAIIHTGEIAVNLDAKTVEVNGHRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G DE E +++ I KLRKKL Sbjct: 180 GGMDEP-ELKIIDVFICKLRKKL 201 >gi|221065578|ref|ZP_03541683.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220710601|gb|EED65969.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 222 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 98/205 (47%), Gaps = 10/205 (4%) Query: 23 GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRA-HSQVPLIGI 78 G+ EG + + +Q+ A A A ++ G ++ LEL +IIRA +P++ + Sbjct: 19 GLRREGIDVVHVTTAMQAEAAVTQEAFHALILDLGLPDKEGLELLKIIRAIEPSMPILIV 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDG 137 S +++ L G DD + KP RE+ RV A+ RR + S+ GP+R+ Sbjct: 79 SARDAIEHRLMGLHQGADDYLIKPFDLRELAVRVHALLRRTQGRSSQWIHAGPLRLEPAT 138 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 + + L RRE ++ +L R + + ++GL +E V N + HI + Sbjct: 139 GQAWLHEQAVQLSRREIDLIAHLANARNSWMRSEVLNERLFGLHEE-VGSNALNVHIHNI 197 Query: 198 RKKLRNKLGFDPVDSKRFLGYSIDW 222 RK KLG + +++ R LGY + W Sbjct: 198 RK----KLGNEAIENSRGLGYRLGW 218 >gi|84516173|ref|ZP_01003533.1| DNA-binding response regulator CtrA [Loktanella vestfoldensis SKA53] gi|84509869|gb|EAQ06326.1| DNA-binding response regulator CtrA [Loktanella vestfoldensis SKA53] Length = 237 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 75/146 (51%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ ++ ++ L F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRLSRIDT--PILILTGDDGTESKLKSFGFGADDYLTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + TG I V D + EV G L +E ++LE L +G + K + Sbjct: 117 RRSKGHAQSIIRTGQIAVNLDAKTVEVAGNTVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +YG DE E +++ I KLRKKL Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201 >gi|312792508|ref|YP_004025431.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179648|gb|ADQ39818.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 231 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 4/164 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR HS VP+I ++ + + DSG DD V KP E+LAR+ A R+ K Sbjct: 63 IEICRKIRQHSNVPIIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSK 122 Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N E + + + R + ++ L +RE +LEYL+ N+G + + QI + Sbjct: 123 QLNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTRDQILENV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G + + NVV+ +I LR K+ + + + R +GY + Sbjct: 183 WG-YSYMGDTNVVDVYIRYLRSKVDDGFKTKLIHTVRGVGYKCE 225 >gi|158422824|ref|YP_001524116.1| response regulator receiver [Azorhizobium caulinodans ORS 571] gi|158329713|dbj|BAF87198.1| response regulator receiver [Azorhizobium caulinodans ORS 571] Length = 233 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 77/144 (53%), Gaps = 3/144 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R A + P++ +S + + + F G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRSLRLAKVKTPILILSGLANTEDKVKGFGFGADDYLTKPFHKDEMVARIHAIVRRSK 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +TG + V D + EV+G L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVIQTGDLIVNLDTKTVEVEGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRN 203 DE E +++ I KLRKKL N Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLAN 203 >gi|84686906|ref|ZP_01014790.1| two component transcriptional regulator, winged helix family protein [Maritimibacter alkaliphilus HTCC2654] gi|84665103|gb|EAQ11583.1| two component transcriptional regulator, winged helix family protein [Rhodobacterales bacterium HTCC2654] Length = 237 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S + L F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRLARI--ETPILILSGNDDTENKLRGFGFGADDYMTKPFHRDELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + +TG + V D + EV G L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSVIQTGRVAVNLDAKSVEVDGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +YG DE E +++ I KLRKKL Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201 >gi|258545772|ref|ZP_05706006.1| DNA-binding response regulator [Cardiobacterium hominis ATCC 15826] gi|258519017|gb|EEV87876.1| DNA-binding response regulator [Cardiobacterium hominis ATCC 15826] Length = 219 Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 7/163 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R IR PLI +S + + G DD KP +RE+++R+ A+ RR Sbjct: 61 FELCRRIRQQWTTPLIFLSARNEEIDRIVGLELGADDYCGKPFSNRELISRIKAVCRR-- 118 Query: 121 VSNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N ET + +D + G L R E R+L +L+A+ G+ + Q+ + ++ Sbjct: 119 --SNETETASVWQHNDSAQTISYHGTTLDLTRYEYRLLRHLLAHPGQTFDRDQLVNTLWD 176 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D ++ V+SHI LR+KLR DP+ ++R GY ++ Sbjct: 177 HPDH-IDNRTVDSHIKTLRQKLRAIAPDADPIRTRRGYGYHLE 218 >gi|302387812|ref|YP_003823634.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302198440|gb|ADL06011.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 223 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E + IR +SQVP+I ++ + L FD GVD+ ++KP + ++ARV AI RR Sbjct: 65 ETCKTIRKYSQVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRRSNA 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V+ + E G I + + G+ L +E +L Y + N+G +++ +I + ++ Sbjct: 125 VTADAVEIGGICIDKAAHQVTIDGKDIDLSYKEFELLAYFLENQGIALSREKILNNVWN- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLG 206 +D + +++H+ KKLRNK+G Sbjct: 184 YDYFGDARTIDTHV----KKLRNKMG 205 >gi|153010575|ref|YP_001371789.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562463|gb|ABS15960.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] Length = 220 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 21/227 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI------G 55 ++++D A+++DG G+S+ GF + + ++ A +A ++ G Sbjct: 3 VLIVEDDAVLRDGLTV-----GLSIGGFTADAVKTCEEAGAALTNHEFDALVLDLMLPDG 57 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G VL+ R P++ ++ + + D+G DD + KP E+ AR+ A+ Sbjct: 58 SGLDVLKSLR--ERQDATPVLLLTARDQVADRIHGLDAGADDYLGKPFDLDEVAARLRAL 115 Query: 116 YRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR +A E +R+ ++ E QGE L RRE IL LM + G+ ++++QI Sbjct: 116 VRR-AAGRPQALIEWRGLRLDPANQNVEHQGEPIRLSRREYSILHALMIHPGRILSRSQI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E VE N VE HI LR KLG + + R +GY + Sbjct: 175 EEKLYG-WQEEVESNAVEVHI----HHLRGKLGPGMIQTVRGIGYRL 216 >gi|227545794|ref|ZP_03975843.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213910|gb|EEI81749.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 256 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 19/173 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + + Sbjct: 85 LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQAT 144 Query: 123 NNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + T G I + V+GE P +E +LEYLM N+G+ + + Q+ Sbjct: 145 AQASGTVDDDIPLVCGDIAMQVGQHQVTVRGEAVFFPLKEFELLEYLMQNKGRVMTRHQL 204 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 I+G D + ++ H+ K++R+K+ DP K R LGY ID Sbjct: 205 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 252 >gi|311747539|ref|ZP_07721324.1| DNA-binding response regulator ArlR [Algoriphagus sp. PR1] gi|126575520|gb|EAZ79830.1| DNA-binding response regulator ArlR [Algoriphagus sp. PR1] Length = 227 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 4/169 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G +LEL + ++ ++ IS SL L D G DD + KP H E+LAR+ A Sbjct: 57 GNGLTLLELIK--SRKMEISILIISAKGSLDDKLSGLDLGADDYLAKPFHLAELLARLKA 114 Query: 115 IYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 IYRR K+ + I + + V ++ L ++E +L + + N+ + V K I Sbjct: 115 IYRRTKMQGFDEVVYNEITIINSQLQVLVNNQLLDLTKKEYDLLLFFLTNKDRVVGKNAI 174 Query: 174 FSAIYGLF-DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G + D+ + V H+ LRKK+ G D + + LGY D Sbjct: 175 AHHLWGDYTDDLSNFDFVYQHVKNLRKKISAAGGRDYIRTVYGLGYKFD 223 >gi|329890527|ref|ZP_08268870.1| cell cycle transcriptional regulator ctrA [Brevundimonas diminuta ATCC 11568] gi|328845828|gb|EGF95392.1| cell cycle transcriptional regulator ctrA [Brevundimonas diminuta ATCC 11568] Length = 233 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 72/148 (48%), Gaps = 3/148 (2%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R P++ +S + T + F G DD + KP H E++AR A+ RR Sbjct: 60 LEVLRQLRNGKINTPVMILSGSHEIDTKVKTFGGGADDYLTKPFHKDELIARTHAVVRRS 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + TG I V D + EV G L +E ++LE L +G + K + +Y Sbjct: 120 KGHAQAIIHTGEIAVNLDAKTVEVNGHRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG 206 G DE E +++ I KLRKKL G Sbjct: 180 GGMDEP-ELKIIDVFICKLRKKLATAAG 206 >gi|217031634|ref|ZP_03437139.1| hypothetical protein HPB128_21g192 [Helicobacter pylori B128] gi|298736656|ref|YP_003729182.1| OmpR family two-component system response regulator [Helicobacter pylori B8] gi|216946834|gb|EEC25430.1| hypothetical protein HPB128_21g192 [Helicobacter pylori B128] gi|298355846|emb|CBI66718.1| two-component system, OmpR family, response regulator [Helicobacter pylori B8] Length = 223 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 32/231 (13%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55 M VL+ ++ V G I + G++++GF SLE E+L D+ + ++ Sbjct: 1 MRVLLIEKNSVLGGEI----EKGLNIKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 + + RI HS + ++ SD P+ + + F+ G DD + KP +R I A VA I Sbjct: 52 DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARI 109 Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RL+ +N E G + + D GR+ EV+G+ F +L +L +R + Sbjct: 110 EARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQI 162 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+K Q+ AI+ E V NV+E I+++R+K+ LG V++ R GY Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 212 >gi|302390526|ref|YP_003826347.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302201154|gb|ADL08724.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 229 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 17/196 (8%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+G+ D GV +L+ +F+ + +VS + R IR Sbjct: 23 LEKEGFAVTCADSGVEALKLLEKRKFDLVVLDIMMPEVSGFDVL------------RRIR 70 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---NNR 125 Q+P+I ++ L + G DD + KP RE+ AR+ A+ RR K S N Sbjct: 71 EKIQIPVIFLTARAEEPDKLLGLELGGDDYITKPFSLRELAARIRAVLRRAKPSEAANTI 130 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E G IR+ + + + G L E RIL LMA+ G V++ +I ++G + E Sbjct: 131 LEYGGIRLDLNEKTASLNGRPLFLTPTEFRILAILMAHPGTIVSRLRILEEVFGGYYEGY 190 Query: 186 EENVVESHISKLRKKL 201 E N +++HIS LRKKL Sbjct: 191 ERN-LDTHISNLRKKL 205 >gi|257867051|ref|ZP_05646704.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873386|ref|ZP_05653039.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257877129|ref|ZP_05656782.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257801107|gb|EEV30037.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257807550|gb|EEV36372.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257811295|gb|EEV40115.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 224 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN-NRAETG 129 Q P++ ++ L+ + F G DD + KP + E+L R+ A+ +R L + N N E Sbjct: 72 QTPVLILTAKDGLEDKVTGFQKGADDYLTKPFYREELLMRIKALLKRSLGLFNENTLEYN 131 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + QG++ P+ +E +L Y + NR + K QIF I+G FD V Sbjct: 132 GLLCNLGTNEVSYQGQLLPIQGKEFELLLYFLQNRNIILTKEQIFDRIWG-FDSETTLTV 190 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++S LRK LR + G D + + R +GY Sbjct: 191 VEVYMSNLRKHLR-QTGIDKEIRTLRNVGY 219 >gi|309811547|ref|ZP_07705327.1| response regulator MprA [Dermacoccus sp. Ellin185] gi|308434490|gb|EFP58342.1| response regulator MprA [Dermacoccus sp. Ellin185] Length = 231 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 6/158 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ ++P++ ++ S+ T+ G DD + KP E++AR+ A+ RR K ++ Sbjct: 70 RLREGGRELPIVFLTARDSVDDTVKGLTVGGDDYITKPFSLEEVVARIRAVLRRTKADDS 129 Query: 125 RAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 T G + + D + G V + E ++L YLM N G+ V+K QI ++ + Sbjct: 130 DGPTVTVGDLELDDDSHEVRRAGRVIDVSPTEFKLLRYLMLNAGRVVSKAQILDHVWD-Y 188 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 D E +VES+IS LR+K+ + G +P + +KR +GY Sbjct: 189 DFRGEAGIVESYISYLRRKI-DVDGLEPLIHTKRGVGY 225 >gi|310828176|ref|YP_003960533.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612] gi|308739910|gb|ADO37570.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612] Length = 231 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 88/186 (47%), Gaps = 16/186 (8%) Query: 27 EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + + EE L + RE + I ++ E+ R IR S VP+I I+ Sbjct: 24 EGFEPVVAYDGEEALAAYRREAPAVILLDVMMPKLDGFEVCRQIREESAVPIIMITARGE 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS-------- 135 + D G DD + KP E++ARV AI RRL +R ++ FS Sbjct: 84 DFEKIMGLDIGADDYIVKPFSGGEVMARVRAILRRL----SRDGGARLQFFSYRGLTIDL 139 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 D V GE PL ++E +L L ANR K ++ + A++G +D + V+SHI Sbjct: 140 DTYTTTVDGEAIPLTKKETELLWTLAANRQKVFSRDNLLDAVWG-YDYYGDNRTVDSHIR 198 Query: 196 KLRKKL 201 +LR KL Sbjct: 199 RLRAKL 204 >gi|167627448|ref|YP_001677948.1| response regulator receiver protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597449|gb|ABZ87447.1| response regulator receiver protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 229 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 6/165 (3%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + L +I+R + +P+I +S S + + SG DD + KP E++ RV +Y+R Sbjct: 64 ISLLKILRKQNVTIPVIILSALDSTENKIQGLTSGSDDYLTKPFSIDELIVRVNILYKRT 123 Query: 120 K----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K +++ G I + + E+ L +RE ++L L+ ++ + V+KT I Sbjct: 124 KQIAEAQSHKLICGDIILDELAHEVRRNDELILLQQREYKVLHLLLKHKNEVVSKTMILK 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVE HIS+LR KL DP+ + R GY I Sbjct: 184 EVWD-YDFDPQTNVVEVHISRLRNKLTENGLPDPIKTIRGFGYVI 227 >gi|300744319|ref|ZP_07073338.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567] gi|311112934|ref|YP_003984156.1| response regulator [Rothia dentocariosa ATCC 17931] gi|300380044|gb|EFJ76608.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567] gi|310944428|gb|ADP40722.1| response regulator [Rothia dentocariosa ATCC 17931] Length = 228 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 18/231 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGE 58 +L++D + D L G EGF + + L + RED + ++ G Sbjct: 4 ILLVEDEEALYDPLSFLLGR-----EGFTPVVVDNGLDAVPAFEREDPDLVLLDVMLPGM 58 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +E+ + IRA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 59 SGMEVCKKIRASSSVPIIMLTAKDSEIDKVLGLELGADDYVTKPYSSRELMARIRAVLRR 118 Query: 119 LKVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + GP+R+ + V GE +P +E +LE L+ N G+ + + Q Sbjct: 119 QSPDHGDEQDQKALAAGPVRMDVERHVVTVDGEEVSMPLKEFELLEILLRNTGRVMTRAQ 178 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221 + ++G D + ++ HI +LR K+ K P V + R LGY + Sbjct: 179 LIERVWG-ADYVGDTKTLDVHIKRLRSKIEPK-ASSPRYVITVRGLGYKFE 227 >gi|293604396|ref|ZP_06686803.1| two component response regulator [Achromobacter piechaudii ATCC 43553] gi|311105155|ref|YP_003978008.1| response regulator 3 [Achromobacter xylosoxidans A8] gi|292817273|gb|EFF76347.1| two component response regulator [Achromobacter piechaudii ATCC 43553] gi|310759844|gb|ADP15293.1| response regulator 3 [Achromobacter xylosoxidans A8] gi|317402710|gb|EFV83258.1| two-component system response regulatory protein [Achromobacter xylosoxidans C54] Length = 223 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 4/152 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKVSNNRAETG 129 +QVP++ ++ ++ + D+G DD V KP E+ ARV A RR + E G Sbjct: 71 NQVPVLILTARDGIEDRVAGLDAGADDYVTKPFELPELAARVRAFGRRRAGQAQPLIEVG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P+ + GR+ G+ L RE +LE LMA G+ V K QI +++ +D EN Sbjct: 131 PLVFDTVGREVRANGQRLSLSVRELSVLEMLMARVGRVVTKRQIVNSLSA-WDADFSENA 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE ++ +LRK+L + + R GY +D Sbjct: 190 VEVYVYRLRKRLEGTGA--SIQTVRGFGYMLD 219 >gi|330960611|gb|EGH60871.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 225 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 108/219 (49%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + + D++ I+ L G G L Sbjct: 3 LLVVEDEALLRHNLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGG--L 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R + P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR Sbjct: 61 DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL + + F P+++ R +GY Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGY 218 >gi|304393343|ref|ZP_07375271.1| cell cycle transcriptional regulator CtrA [Ahrensia sp. R2A130] gi|303294350|gb|EFL88722.1| cell cycle transcriptional regulator CtrA [Ahrensia sp. R2A130] Length = 234 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 9/150 (6%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + + P++ +S ++ + G DD + KP H E++AR+ AI RR Sbjct: 62 EVLRTLRLSKVKTPILILSGLAGIEDKVRGLGFGADDYMTKPFHKDELVARIQAIVRR-- 119 Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S AE TG ++V D + EV G+ L +E ++LE L +G + K + Sbjct: 120 -SKGHAESIITTGDLKVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNH 178 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG 206 +YG DE E +++ I KLRKKL + G Sbjct: 179 LYGGMDEP-ELKIIDVFICKLRKKLASATG 207 >gi|300853644|ref|YP_003778628.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300433759|gb|ADK13526.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 225 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 112/226 (49%), Gaps = 13/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L++D ++ D + + + +++ ++ + +E +S D+ ++ L K Sbjct: 3 LLLVEDEVMLSDALVYILKKNNYAVDAAYDGITGQEMAESEIY-DLIILDRMLPEKNG-- 59 Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ + IR + P++ ++ S++ ++ D+G DD + KP E+LAR+ A+ RR Sbjct: 60 LDILKFIRKKGIETPVLMLTAMDSIENRVEGLDNGADDYLVKPFSKEELLARIRALSRR- 118 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + G I++ S +P E G L +E ++LE L N+ + + K QI Sbjct: 119 --HTDFIQHGSIKLSSLTFNPLRGEIECNGNKTKLTTKESQLLELLARNKNQVLTKDQIL 176 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++GL + N +E + S LRKKLR +++ R +GY + Sbjct: 177 DRVWGLDSDIEMNNNIEVYFSYLRKKLRELKCNVVIETIRGIGYCL 222 >gi|188578983|ref|YP_001915912.1| two-component system regulatory protein (response regulator) required for AvrXa21 activity R2 (raxR2) [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523435|gb|ACD61380.1| two-component system regulatory protein (response regulator) required for AvrXa21 activity R2 (raxR2) [Xanthomonas oryzae pv. oryzae PXO99A] Length = 223 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 5/161 (3%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +EL + +R + P++ ++ S Q ++ G DD + KP H E+LARV A+ RR Sbjct: 56 MELIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRA 115 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S E GP+ + + V G L E ++LEYLM + G+ V+K + IY Sbjct: 116 AGWSKPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIY 175 Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD + NV+E I +LRKKL P+++ R GY Sbjct: 176 QQDFDR--DSNVLEVFIGRLRKKLDPDGELKPIETVRGRGY 214 >gi|85708491|ref|ZP_01039557.1| phosphate regulon response regulator [Erythrobacter sp. NAP1] gi|85690025|gb|EAQ30028.1| phosphate regulon response regulator [Erythrobacter sp. NAP1] Length = 229 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 90/171 (52%), Gaps = 6/171 (3%) Query: 56 KGEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 +G +E+ R +R + VP+I ++ + + ++G DD + KP RE+LARV Sbjct: 58 EGTSGIEVCRRLRRDKETAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARV 117 Query: 113 AAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 AA+ RR++ ++ E G I++ + +G L E R+L++ M + G+ ++ Sbjct: 118 AAVMRRIRPALAGETIEVGDIKLDPVAHKVQRRGRALQLGPTEYRLLKFFMESPGRVFSR 177 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 Q+ ++G + +E V+ HI +LRK + + DP+ + R GY+++ Sbjct: 178 GQLLDGVWGTGSD-IELRTVDVHIRRLRKAIGLEGAKDPIRTVRSAGYALE 227 >gi|47567077|ref|ZP_00237794.1| two-component response regulator vanRB [Bacillus cereus G9241] gi|47556395|gb|EAL14729.1| two-component response regulator vanRB [Bacillus cereus G9241] Length = 221 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV A+ RR Sbjct: 63 ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 122 Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + + + S V G L +E I+ L+ NRGK ++++ + + I+ Sbjct: 123 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIHTLLQNRGKVLSRSDLLNKIW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ + V+++HI LRK KLG + + + +GY I+ Sbjct: 183 G-YEHYGDVRVIDTHIKNLRK----KLGIPYIKTVKGIGYKIE 220 >gi|253989214|ref|YP_003040570.1| DNA-binding transcriptional regulator PhoP [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780664|emb|CAQ83826.1| two-component response regulator phop [Photorhabdus asymbiotica] Length = 222 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 107/222 (48%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L++ D G ++ + + ++ + + D++ ++ L GE L Sbjct: 3 ILIVEDNMLLRHHLTVQLRDTGHLVDAAANAKEADYYLAESEPDIAIVDLGL--PGEDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R R + +P++ ++ S Q + D+G DD V KP H EI+AR+ A+ RR Sbjct: 61 SLIRRWRQKDEKLPILVLTARESWQEKVTVLDAGADDYVTKPFHLEEIIARMQALLRRNN 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + E P R+ ++ + GE L E +I+E LM N K V K + +Y Sbjct: 121 GLVSQIIEFPPFRIDLSRKELTIYGESVKLTAFEYKIVEILMCNSDKIVTKESLMRQLYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E + ++ I +LRKK+++ ++ + + R GY D Sbjct: 181 -DAELREGHSIDVLIGRLRKKIQDVWPYEAIVTVRSQGYRFD 221 >gi|24375965|ref|NP_720008.1| DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24350955|gb|AAN57452.1|AE015880_11 DNA-binding response regulator [Shewanella oneidensis MR-1] Length = 220 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 85/150 (56%), Gaps = 7/150 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131 +P++ ++ + +D +G DD + KP H E+LAR+ A+ RR ++N + + Sbjct: 73 MPVLILTARDAWHERVDGLKAGADDYLGKPFHVEELLARLEALIRRHFGRADNLLQHAGV 132 Query: 132 RVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + D + +GEV L + E R+L YLMAN K V+K+++ IY D+ + NV+ Sbjct: 133 SLDVDKQTATNAEGEVIELTKIEYRLLHYLMANPSKIVSKSELSERIYE-EDQIKDSNVI 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++++LR+ +LG D ++++R GY + Sbjct: 192 EVYVNRLRQ----RLGKDYIETRRGQGYRL 217 >gi|317009049|gb|ADU79629.1| transcriptional regulator [Helicobacter pylori India7] Length = 223 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 32/231 (13%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55 M +L+ ++ V G I + G++++GF SLE E+L DV + ++ Sbjct: 1 MRILLIEKNSVLGGEI----EKGLNVKGFMADVTESLEDGEYLM-----DVRNYDLVMVS 51 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 + + RI HS + ++ SD P+ + + F+ G DD + KP +R I A VA I Sbjct: 52 DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARI 109 Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RL+ +N E G + + D GR+ EV+G+ F +L +L +R + Sbjct: 110 EARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQI 162 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+K Q+ AI+ E V NV+E I+++R+K+ LG V++ R GY Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 212 >gi|15611449|ref|NP_223100.1| putative transcriptional regulator [Helicobacter pylori J99] gi|108562829|ref|YP_627145.1| putative transcriptional regulator [Helicobacter pylori HPAG1] gi|208434350|ref|YP_002266016.1| putative transcriptional regulator [Helicobacter pylori G27] gi|210134599|ref|YP_002301038.1| transcriptional regulator [Helicobacter pylori P12] gi|217033302|ref|ZP_03438733.1| hypothetical protein HP9810_9g55 [Helicobacter pylori 98-10] gi|308184206|ref|YP_003928339.1| transcriptional regulator [Helicobacter pylori SJM180] gi|149242073|pdb|2HQR|A Chain A, Structure Of A Atypical Orphan Response Regulator Protein Revealed A New Phosphorylation-Independent Regulatory Mechanism gi|149242074|pdb|2HQR|B Chain B, Structure Of A Atypical Orphan Response Regulator Protein Revealed A New Phosphorylation-Independent Regulatory Mechanism gi|4154918|gb|AAD05966.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99] gi|107836602|gb|ABF84471.1| putative transcriptional regulator [Helicobacter pylori HPAG1] gi|208432279|gb|ACI27150.1| putative transcriptional regulator [Helicobacter pylori G27] gi|210132567|gb|ACJ07558.1| transcriptional regulator [Helicobacter pylori P12] gi|216944243|gb|EEC23668.1| hypothetical protein HP9810_9g55 [Helicobacter pylori 98-10] gi|261837837|gb|ACX97603.1| transcriptional regulator [Helicobacter pylori 51] gi|297379624|gb|ADI34511.1| transcriptional regulator [Helicobacter pylori v225d] gi|307637100|gb|ADN79550.1| two-component response regulator [Helicobacter pylori 908] gi|308060126|gb|ADO02022.1| transcriptional regulator [Helicobacter pylori SJM180] gi|308061756|gb|ADO03644.1| transcriptional regulator [Helicobacter pylori Cuz20] gi|317012243|gb|ADU82851.1| transcriptional regulator [Helicobacter pylori Lithuania75] gi|317013847|gb|ADU81283.1| transcriptional regulator [Helicobacter pylori Gambia94/24] gi|317177216|dbj|BAJ55005.1| putative transcriptional regulator [Helicobacter pylori F16] gi|317181746|dbj|BAJ59530.1| putative transcriptional regulator [Helicobacter pylori F57] gi|325995691|gb|ADZ51096.1| Two-component response regulator [Helicobacter pylori 2018] gi|325997287|gb|ADZ49495.1| putative transcriptional regulator [Helicobacter pylori 2017] Length = 223 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 32/231 (13%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55 M VL+ ++ V G I + G++++GF SLE E+L D+ + ++ Sbjct: 1 MRVLLIEKNSVLGGEI----EKGLNVKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 + + RI HS + ++ SD P+ + + F+ G DD + KP +R I A VA I Sbjct: 52 DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARI 109 Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RL+ +N E G + + D GR+ EV+G+ F +L +L +R + Sbjct: 110 EARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQI 162 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+K Q+ AI+ E V NV+E I+++R+K+ LG V++ R GY Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 212 >gi|311111737|ref|YP_003982959.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931] gi|310943231|gb|ADP39525.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931] Length = 231 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 103/211 (48%), Gaps = 13/211 (6%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L ++GY A+F ++G S FE +++ S D+ ++ L GK +E+ IR+ Sbjct: 25 LAQEGYNAVFCENG-------SRAFETFMRHSP--DLVLLDLMLPGKSG--IEVCEQIRS 73 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 S VP+I ++ + + ++G DD + KP H E++AR+ A R + G Sbjct: 74 SSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHLELMARIRARLRPRESRQLVVRVG 133 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + DGR + +G P+ E +L L+ G+ +++ ++ ++G D V +++ Sbjct: 134 DTIMDMDGRTLKYKGVEVPMTPLEFDLLAALVRRPGQAMSRQELLETVWGYSD--VSDSL 191 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V H+ +LR K + + + R +GY + Sbjct: 192 VNVHVQRLRAKFTDIGAEQVIQTVRGVGYKV 222 >gi|317481983|ref|ZP_07941008.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916550|gb|EFV37947.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] Length = 296 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 19/173 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + + Sbjct: 125 LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQAT 184 Query: 123 NNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + T G I + V+GE P +E +LEYLM N+G+ + + Q+ Sbjct: 185 AQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQL 244 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 I+G D + ++ H+ K++R+K+ DP K R LGY ID Sbjct: 245 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 292 >gi|163868751|ref|YP_001609968.1| cell cycle transcriptional regulator CtrA [Bartonella tribocorum CIP 105476] gi|161018415|emb|CAK01973.1| cell cycle transcriptional regulator CtrA [Bartonella tribocorum CIP 105476] Length = 233 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 15/188 (7%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74 YI G++G+ L +++ L D+S + K L L +I + P Sbjct: 28 YITDLGEEGIDLGKL--YDYDIILLDLNLPDMSGYDVL------KTLRLAKI-----KTP 74 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRV 133 ++ +S +++ + F SG DD + KP H E++AR+ A+ RR K + + TG + V Sbjct: 75 VLILSGMNAIEDKVRGFGSGADDYMTKPFHKDELIARIHAVVRRSKGHAQSVIVTGDLTV 134 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D + EV G L +E ++LE L +G + K + +YG DE E +++ Sbjct: 135 NLDAKTVEVAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKIIDVF 193 Query: 194 ISKLRKKL 201 I KLRKKL Sbjct: 194 ICKLRKKL 201 >gi|294677200|ref|YP_003577815.1| cell cycle transcriptional regulator CtrA [Rhodobacter capsulatus SB 1003] gi|6467529|gb|AAF13177.1|AF181078_1 response regulator homolog [Rhodobacter capsulatus] gi|294476020|gb|ADE85408.1| cell cycle transcriptional regulator CtrA [Rhodobacter capsulatus SB 1003] Length = 237 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 3/148 (2%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R A P++ ++ + + F G DD + KP H E++AR+ AI RR Sbjct: 60 LEVLRQLRLARVDTPILILTGADDTENKIKGFGFGADDYMTKPFHREELVARIHAIIRRS 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K S + TG I V D + EV G+ L +E ++LE L +G + K + +Y Sbjct: 120 KGHSQSIIRTGKISVNLDAKTVEVGGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG 206 G DE E +++ I KLRKKL G Sbjct: 180 GGMDEP-ELKIIDVFICKLRKKLAEVTG 206 >gi|116511831|ref|YP_809047.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|116107485|gb|ABJ72625.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] Length = 228 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 20/225 (8%) Query: 15 YIALFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAF--------------LIGKGE 58 Y L +D S+ + L FE++ S+A + ++A+E F +I K + Sbjct: 3 YHVLIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFEQAKPAVDVVLLDWMIPKLD 62 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + L R+ + P+I ++ + + D+G DD + KP E+LAR+ I+R+ Sbjct: 63 GLTVLRRMKKIQPNTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRK 122 Query: 119 LKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S ++ E ++V EV G+ L +RE +L Y + +RG V++ I + Sbjct: 123 WSTSCSKVYELDYLKVDLTAHTTEVAGKTVNLTQREFALLSYFLEHRGIVVSRADILDDV 182 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G+ FD +EN V++++ LR K+ +++ R +GY ++ Sbjct: 183 WGMDFDG--QENTVDAYVRYLRAKIDLPNHKSLIETVRGVGYRLN 225 >gi|257876917|ref|ZP_05656570.1| DNA binding response regulator [Enterococcus casseliflavus EC20] gi|257811083|gb|EEV39903.1| DNA binding response regulator [Enterococcus casseliflavus EC20] Length = 230 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 5/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125 IR S+VP+I +S + + G DD + KP +LA++ A+ RR + S+ + Sbjct: 67 IRKKSEVPIIFLSSMDQQMNQIMAMNMGADDYLTKPFDLAFVLAKIQALLRRSYQYSHQQ 126 Query: 126 A---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 A E G + + + QGE PL E RIL L+ +RGK VAK I ++ + Sbjct: 127 ALTFEIGQVTFYPTENVLKKQGEQLPLSPNEARILSLLLQHRGKIVAKETIIEMLWN-SE 185 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ N + ++++LRKKL D + + + GY I+ Sbjct: 186 EFIDNNTLAVNMTRLRKKLSQIELSDLIQTVKNKGYLIE 224 >gi|260589327|ref|ZP_05855240.1| DNA-binding response regulator YycF [Blautia hansenii DSM 20583] gi|260540408|gb|EEX20977.1| DNA-binding response regulator YycF [Blautia hansenii DSM 20583] Length = 222 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 105/219 (47%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++++ AL ++G E + FE+ Q A E + +I G Sbjct: 4 IIVIEDDKVLREALTALLRENGY--EVCQIVRFEKTEQQIAEEKADLVLLDIILPGTNGQ 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ + G DD + KP + +L ++ A++RRLK Sbjct: 62 EILRNLRRISDVPVIMLTSKTGETDEILAMSYGADDYITKPYNPALLLLKIEALFRRLKP 121 Query: 122 SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E VF + + Q L + E I YL+ NRGK V++ ++ ++ Sbjct: 122 QEKQEELEYRGVFLNPLKSTLRYQDREIVLSKNEISIFHYLLKNRGKIVSRDELMDYLWD 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D V++N + +I++LRKKL D ++++R GY Sbjct: 182 CND-FVDDNTLTVNINRLRKKLEEVELTDVIETRRRQGY 219 >gi|225377220|ref|ZP_03754441.1| hypothetical protein ROSEINA2194_02866 [Roseburia inulinivorans DSM 16841] gi|225210924|gb|EEG93278.1| hypothetical protein ROSEINA2194_02866 [Roseburia inulinivorans DSM 16841] Length = 232 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 98/197 (49%), Gaps = 7/197 (3%) Query: 29 FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88 ++ E ++L++ D I ++ K + + L I R + VP++ ++ + + Sbjct: 35 YDGAEALDYLENGGNYD-GVILDIMMPKMDGITVLKTIRRHGNSVPVLLLTAKAEIDDRV 93 Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI---RVFSDGRDPEVQG 144 + DSG DD + KP +E+LAR+ A+ RR ++N G I R PE Sbjct: 94 EGLDSGADDYLPKPFSMKELLARIRAMTRRQTDTTDNVLTFGDIALNRSTYQLTGPE-NP 152 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 E L +E ++LE LM+N G+ + I+G +D E+NVV +IS LRKKL + Sbjct: 153 EGIRLAGKEYQMLEMLMSNPGQVICPDLFMDKIWG-YDSEAEQNVVWVYISYLRKKLTSI 211 Query: 205 LGFDPVDSKRFLGYSID 221 + + R LGYS++ Sbjct: 212 GSQVKIRAARGLGYSLE 228 >gi|190894846|ref|YP_001985139.1| putative two-component response regulator protein [Rhizobium etli CIAT 652] gi|190700507|gb|ACE94589.1| probable two-component response regulator protein [Rhizobium etli CIAT 652] gi|327189023|gb|EGE56209.1| putative two-component response regulator protein [Rhizobium etli CNPAF512] Length = 222 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 4/157 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ ++ S++P+I ++ SL + DSG DD + KP E+ AR+ A+ RR + Sbjct: 63 LKRLRQSGSKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQDR 122 Query: 123 NNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + T +FS G R V GE L RE +LE L+ G V+KT + +++G F Sbjct: 123 ASSEITVGDLLFSGGTRQFFVAGEPLQLTPREYAVLEQLVMKLGTTVSKTALSESVFG-F 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D+ + + +E +I +LRKKL N + + R LGY Sbjct: 182 DDEADPSAIEIYIHRLRKKLENS--SVQIATLRGLGY 216 >gi|300024327|ref|YP_003756938.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299526148|gb|ADJ24617.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 229 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 80/151 (52%), Gaps = 6/151 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 ++P++ +S + +D ++G DD + KP H E+ AR+ A+ RR +++ G Sbjct: 84 KLPVLILSARGTWAEKVDGLNAGADDYITKPFHIPEVAARLKALIRRASGIASPVLSHGG 143 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I + + GE L RE ++L Y M G+ V++ ++ +Y L D + E N + Sbjct: 144 ISLDTTSNRVCQNGESIELTARELKMLTYFMHRIGRIVSQAELVDHLYALED-SRESNTI 202 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E +IS+LR+ KLG D + + R LGY +D Sbjct: 203 EVYISRLRR----KLGADVITTVRGLGYRMD 229 >gi|56962170|ref|YP_173893.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56908405|dbj|BAD62932.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 222 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 2/161 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ ++ P+I ++ + + DSG +D + KP E+LAR+ I+R K + Sbjct: 64 LRRLRKSKETTPVILLTAKGEVSDKVTGLDSGANDYMTKPFFIEELLARIRVIFRE-KTT 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 NN G + + D V+G+ L ++E +L YL+ NR +++ I ++G ++ Sbjct: 123 NNSLHWGELTMNPDTYQVIVKGQELGLTKKEYELLYYLLVNRNIALSRENIIENVWG-YE 181 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + N+V+ I +R+KL + + + + R +GY I N Sbjct: 182 YYGDTNIVDVFIKNIRRKLEDVMDVRMIQTIRGIGYVIKDN 222 >gi|103486056|ref|YP_615617.1| two component transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976133|gb|ABF52284.1| two component transcriptional regulator, winged helix family [Sphingopyxis alaskensis RB2256] Length = 235 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 2/147 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L ++ A Q P++ +S + + + F G DD V KP H E++AR+ A+ RR K Sbjct: 63 LKKLRTAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHRDELVARIHAVVRRSKGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + +TG + V D + EV L +E ++LE L +G + K + +YG Sbjct: 123 SQSVIKTGKLAVNLDTKTVEVDSIRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGM 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFD 208 DE E +++ I KLRKKL G D Sbjct: 183 DEP-ELKIIDVFICKLRKKLALACGGD 208 >gi|62258001|gb|AAX77759.1| unknown protein [synthetic construct] Length = 264 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 65/240 (27%), Positives = 110/240 (45%), Gaps = 31/240 (12%) Query: 6 DDRALVK--DGYIALFGDDGVSLEGFNSLEFEE---------------WLQSSAREDVSA 48 DD+ +++ D L DD + F +FEE +L ++ DV Sbjct: 20 DDKHMLEMSDNPKVLVADDDKKIAQFIKTKFEENGIDTTVAFDGKEALFLINTNNYDVIV 79 Query: 49 IE---AFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 I+ +L G + L +I+R + P+I +S S + ++ SG DD + KP Sbjct: 80 IDWMMPYLDG-----ISLLKILRKQNINTPVIILSALDSTENKIEGLKSGSDDYLTKPFS 134 Query: 105 HREILARVAAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160 E++ RV +Y+R K ++ G I + + E+ L +RE ++L L Sbjct: 135 IDELIIRVNILYKRTKQITEAQTHKLSCGDIVLDELAHEVRRNRELILLQQREYKVLHLL 194 Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ + V+KT I ++ +D + NVVE HIS+LR KL DP+ + R GY I Sbjct: 195 LKHKNEVVSKTMILKEVWD-YDFDPQTNVVEVHISRLRNKLTEGGLSDPIKTIRGFGYVI 253 >gi|294101700|ref|YP_003553558.1| two component transcriptional regulator, winged helix family [Aminobacterium colombiense DSM 12261] gi|293616680|gb|ADE56834.1| two component transcriptional regulator, winged helix family [Aminobacterium colombiense DSM 12261] Length = 226 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 97/192 (50%), Gaps = 6/192 (3%) Query: 19 FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIG 77 F ++G S+E + EE L+ + + I L+ G LE+ +R++ + +P+I Sbjct: 20 FAENGFSVE--RAYTGEEGLEKAKNPECECIVLDLMLPGISGLEVLERLRSNGATLPIII 77 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSD 136 ++ S+ ++ + G DD + KP RE+LARV + RR ++ +N G + + Sbjct: 78 LTAKDSVDEKVEGLNKGADDFLVKPFDFRELLARVRTLLRRTSELQHNLLHCGSMTIDPV 137 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 R+ V + PL RRE ILE L+ + + + +I S ++ + NVV+ HI Sbjct: 138 ARECRVDNTILPLRRREFDILELLLRHENQVFTREKIISQVWQKEYDGT-SNVVDVHIKY 196 Query: 197 LRKKLRNKLGFD 208 LR KLR + G D Sbjct: 197 LRDKLREQ-GLD 207 >gi|73661850|ref|YP_300631.1| response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123643287|sp|Q49ZT8|HSSR_STAS1 RecName: Full=Heme response regulator hssR gi|72494365|dbj|BAE17686.1| response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 224 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 12/198 (6%) Query: 34 FEEWLQSSAREDVSAIEA---------FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84 FE +QSSA +S +E ++GK EL +I++ +P+I ++ +L Sbjct: 26 FETIVQSSAENALSYLETHQVDIAIVDVMMGKMSG-FELCKILKEDFDIPVIMLTARDAL 84 Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQ 143 + +G DD V KP +E++ R+ A+ +R V+ NN G + + + + Sbjct: 85 SDKEQAYLTGTDDYVTKPFEVKELMFRIKAVLKRYNVNINNEVSIGNLTLNQSYLEIQSS 144 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + LP +E ++L L +N + + + I+G FD +E V+ HI +LRK+L Sbjct: 145 SKSMNLPNKEFQLLFLLASNPRQVFNRDALIEKIWG-FDYEGDERTVDVHIKRLRKRLEK 203 Query: 204 KLGFDPVDSKRFLGYSID 221 + + R LGY +D Sbjct: 204 IDASVTIHTVRGLGYKVD 221 >gi|197303422|ref|ZP_03168461.1| hypothetical protein RUMLAC_02144 [Ruminococcus lactaris ATCC 29176] gi|197297420|gb|EDY31981.1| hypothetical protein RUMLAC_02144 [Ruminococcus lactaris ATCC 29176] Length = 220 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 85/155 (54%), Gaps = 6/155 (3%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET- 128 + + ++ +S + ++ D+G +D + KP H +E+ AR+ ++ RR + + + Sbjct: 65 NEETKVLILSARSQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKFIQKDVCLSY 124 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE-- 186 G IR + R+ GE L R+E ILEY++ N+G+ V++ ++ ++ D +V+ Sbjct: 125 GDIRFDTKKREACANGEPVSLTRKENGILEYMLLNQGRPVSQEELIEHVW---DASVDSF 181 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + H+S LR+KL+ L +DP+ +K GY ++ Sbjct: 182 SGSIRVHVSSLRRKLKAVLSYDPIVNKIGEGYRLE 216 >gi|241895300|ref|ZP_04782596.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241871606|gb|EER75357.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 231 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 3/151 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAETGP 130 +P++ ++ + + FD G D+ + KP + E+LAR+ + R V + E G Sbjct: 77 LPILMLTAKGEIADKMQGFDLGADEYITKPFYKEELLARLKTLLRHTGVLGQDGALEVGN 136 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 ++++ D V L RE +L YL+ + G+ V K QIF ++G FD VV Sbjct: 137 VQIYVDQHKVLVDDTEVSLQGREFGLLVYLVQHVGQIVTKDQIFDRLWG-FDSDTSLTVV 195 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++S LRK LR + + R +GY+++ Sbjct: 196 EVYMSNLRKNLRQAEAQVNIKTLRNVGYTLN 226 >gi|229828805|ref|ZP_04454874.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM 14600] gi|229791968|gb|EEP28082.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM 14600] Length = 233 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 3/146 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R IR S+VP++ ++ Q L FD GVD+ ++KP + ++ARV AI RR Sbjct: 71 FDVAREIRETSKVPIVILTAKSDEQDELQGFDIGVDEYISKPFSPKTLVARVQAILRRSG 130 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V E G IR+ V G L +E +L Y M NRG +++ +I ++++ Sbjct: 131 VEEQAKLLEAGGIRLDFVAHTVTVDGREIMLSAKEFELLAYFMENRGIALSREKILNSVW 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR K+ K Sbjct: 191 D-YDYFGDARTIDTHVKKLRAKIGEK 215 >gi|332652879|ref|ZP_08418624.1| transcriptional regulatory protein CutR [Ruminococcaceae bacterium D16] gi|332518025|gb|EGJ47628.1| transcriptional regulatory protein CutR [Ruminococcaceae bacterium D16] Length = 226 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 2/159 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + + + ++ ++ +S S+ + D+G +D + KP E+ AR+ ++ RR V Sbjct: 63 LREVRKVNQELKVLILSARGSVSDKVQGLDNGANDYLAKPFAFEELEARIRSLLRRSFVQ 122 Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N I + + R V GE PL ++E ILEY M + K +++ ++ I+ + Sbjct: 123 ENTVLVWNAISLDTAKRIACVNGEQIPLTKKELSILEYFMLHPTKVISQEELMEHIWNME 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ N V HI+ LRKKL+ L +DP+ ++ GY + Sbjct: 183 IDSFS-NAVRVHIATLRKKLKQALAYDPIVTRIGQGYCL 220 >gi|89091881|ref|ZP_01164836.1| two-component system regulatory protein [Oceanospirillum sp. MED92] gi|89083616|gb|EAR62833.1| two-component system regulatory protein [Oceanospirillum sp. MED92] Length = 229 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 4/149 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 + P+I ++ Q ++ ++G DD + KP H E+ AR+ A+ RR S E GP Sbjct: 72 EFPIIILTARGDWQDKVEGLEAGADDYLVKPFHMEELQARLNALLRRAAGHSKPVLEFGP 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189 I++ + GR E L E R EYL+ N GK ++K+++ +Y FD + NV Sbjct: 132 IKMDTTGRVVYRHNEPVKLTSYEYRTFEYLVLNAGKTISKSELTEHLYHQDFDR--DSNV 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E I +LR+KL P+ + R LGY Sbjct: 190 LEVFIRRLRQKLDPDQDLQPITTVRGLGY 218 >gi|319788127|ref|YP_004147602.1| two component transcriptional regulator, winged helix family [Pseudoxanthomonas suwonensis 11-1] gi|317466639|gb|ADV28371.1| two component transcriptional regulator, winged helix family [Pseudoxanthomonas suwonensis 11-1] Length = 227 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 106/220 (48%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A +++ A +G +++ E ++ DV+ I+ L + Sbjct: 3 ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVAIIDLGL--PKMSGM 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + +R + P++ ++ S Q ++ G DD + KP H E+LAR+ A+ RR Sbjct: 61 ELIKALRDEGKNFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARLNALVRRAA 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S E GP+ + + V G L E ++LEYLM + G+ V+K + IY Sbjct: 121 GWSKPVLECGPVALDLAAQTVTVSGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIYQ 180 Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD + NV+E I +LRKKL + P+++ R GY Sbjct: 181 QDFDR--DSNVLEVFIGRLRKKLDPEGELKPIETVRGRGY 218 >gi|85373907|ref|YP_457969.1| phosphate regulon response regulator [Erythrobacter litoralis HTCC2594] gi|84786990|gb|ABC63172.1| phosphate regulon response regulator [Erythrobacter litoralis HTCC2594] Length = 229 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 89/173 (51%), Gaps = 6/173 (3%) Query: 56 KGEKVLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 +G +E+ R +R + VP+I ++ + + D+G DD + KP RE+LARV Sbjct: 58 EGTSGIEVCRRLRREKETAHVPIIMLTAREAEDDRVRGLDTGADDYMVKPFSPRELLARV 117 Query: 113 AAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 AA+ RR++ ++ + G I + +GE L E R+L++ M + G+ ++ Sbjct: 118 AAVMRRIRPALAGETIQAGDIVLDPVAHKVSRRGETLQLGPTEYRLLKFFMESPGRVFSR 177 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 Q+ ++G + +E V+ HI +LRK + DP+ + R GY+++ N Sbjct: 178 GQLLDGVWGTGSD-IELRTVDVHIRRLRKAIDVPGADDPIRTVRSAGYALETN 229 >gi|71736826|ref|YP_275872.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485923|ref|ZP_05639964.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627099|ref|ZP_06460053.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648110|ref|ZP_06479453.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. aesculi str. 2250] gi|298487951|ref|ZP_07005990.1| DNA-binding response regulator PhoP [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71557379|gb|AAZ36590.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157502|gb|EFH98583.1| DNA-binding response regulator PhoP [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866032|gb|EGH00741.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330986733|gb|EGH84836.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. lachrymans str. M301315] Length = 225 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 108/219 (49%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + + D++ I+ L G G L Sbjct: 3 LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIGG--L 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R + P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR Sbjct: 61 DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL + + F P+++ R +GY Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGY 218 >gi|228990099|ref|ZP_04150071.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM 12442] gi|228769627|gb|EEM18218.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM 12442] Length = 228 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 7/163 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 E+ ++IR+ S +P+I ++ Q + FD G+DD + KP ++ RV A+ RR Sbjct: 70 FEVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSY 129 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + N I V D V PL +E IL+ L+ N+ K + + I ++ Sbjct: 130 DQSTENHLFFKEIHVDCDAYKVYVNEVEIPLTAKEFEILQLLLQNKKKVITRESIVEKVW 189 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ E ++++HI +RK KL + + + +GY ID Sbjct: 190 G-YEYHGETRMIDTHIKNIRK----KLDISYIKTVKGIGYKID 227 >gi|225351103|ref|ZP_03742126.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158559|gb|EEG71801.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 234 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 87/173 (50%), Gaps = 19/173 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S+VP+I ++ + + + G DD + KP RE+LARV A+ RR ++ Sbjct: 63 LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLRRNQMV 122 Query: 123 NNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E+ G I + + V+GE P +E +LEYLM N+G+ + + Q+ Sbjct: 123 ADATESSDDDIPLICGDISMKIGQHEVMVRGENVFFPLKEFELLEYLMQNKGRVMTRHQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 I+G D + ++ H+ K++R+K+ DP K R LGY ID Sbjct: 183 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 230 >gi|256827469|ref|YP_003151428.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256583612|gb|ACU94746.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 225 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 87/167 (52%), Gaps = 7/167 (4%) Query: 45 DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D+ ++ L G G +VLE R R + P++ ++ + L F +G DD + KP Sbjct: 45 DLIVLDLMLPGMNGYEVLEWLRADRVMT--PVLILTALRGIDERLRGFRAGADDFLTKPF 102 Query: 104 HHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161 E+L R+ AI RR V + ++ D +QGE L R+ +LE+L+ Sbjct: 103 AKDELLLRIEAILRRSMNLVEKREFSFKDLVLYPDSHTACIQGEEIELKGRQYDVLEFLV 162 Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 + +G+ ++K+QIF ++G + NVVE ++S +RK+L+ G+D Sbjct: 163 SRQGQLISKSQIFDKVWGFMSDT-STNVVEVYMSAIRKQLK-PYGYD 207 >gi|46201677|ref|ZP_00054581.2| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 234 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 2/145 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L R+ A + P++ +S + SG DD + KP E++AR+ AI RR K Sbjct: 59 LRRLRSARIETPVLILSGLSEPDKKIKGLGSGADDYLTKPFDKGELVARIQAIVRRSKGH 118 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + +TG + V D R V G+ L +E ILE L +G+ + K Q + +YG Sbjct: 119 AQSVIDTGKLSVNLDARTVAVTGDPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYGGI 178 Query: 182 DEAVEENVVESHISKLRKKLRNKLG 206 DE E +++ I KLRKKL G Sbjct: 179 DEP-ELKIIDVFICKLRKKLATATG 202 >gi|163857004|ref|YP_001631302.1| two-component response regulatory protein [Bordetella petrii DSM 12804] gi|163260732|emb|CAP43034.1| two-component response regulatory protein [Bordetella petrii] Length = 223 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 5/167 (2%) Query: 57 GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G L++ R +R +QVP++ ++ L+ + D+G DD V KP E+ ARV A Sbjct: 56 GRSGLDVLRQLRQDGNQVPVLIVTARDGLEDRVAGLDAGADDYVTKPFDLPELAARVRAF 115 Query: 116 -YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + E G + + GR+ G+ L RE +LE LMA G+ V K QI Sbjct: 116 GRRRAGQAQPLIEAGTLTFDTVGREVRANGQRLSLSVRELSVLEMLMARAGRVVTKRQIV 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++ +D EN VE ++ +LRK+L + + R GY +D Sbjct: 176 NSLSA-WDADFSENAVEVYVYRLRKRLEGTGA--SIQTVRGFGYMLD 219 >gi|23464917|ref|NP_695520.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|23325510|gb|AAN24156.1| response regulator of two-component system [Bifidobacterium longum NCC2705] Length = 256 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 54/173 (31%), Positives = 85/173 (49%), Gaps = 19/173 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + + Sbjct: 85 LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQAT 144 Query: 123 NNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + T G I + V+GE P +E +LEYLM N+G+ + + Q+ Sbjct: 145 AQASGTVDDDIPLVCGDIVMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQL 204 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 I+G D + ++ H+ K++R+K+ DP K R LGY ID Sbjct: 205 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 252 >gi|317180700|dbj|BAJ58486.1| putative transcriptional regulator [Helicobacter pylori F32] Length = 223 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 114/231 (49%), Gaps = 32/231 (13%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55 M VL+ ++ V G I + G++++GF SLE E+L D+ + ++ Sbjct: 1 MRVLLIEKNSVLGGEI----EKGLNVKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 + + RI HS + ++ SD P+ + + F+ G DD + KP +R I A +A I Sbjct: 52 DKNALSFVSRIKEKHSSIVILVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALIARI 109 Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RL+ +N E G + + D GR+ EV+G+ F +L +L +R + Sbjct: 110 EARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQI 162 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+K Q+ AI+ E V NV+E I+++R+K+ LG V++ R GY Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 212 >gi|319406896|emb|CBI80531.1| two-component system regulatory protein [Bartonella sp. 1-1C] Length = 222 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 72/132 (54%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H E++AR+ A+ RR + N G + + + ++G++ L Sbjct: 91 IDAGADDYVVKPFHLEEVMARLRALIRRSTGHATNTLSCGEVLLDTKTSRVFIEGQLIKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + K V+KT++ +Y FD+ + N +E I +LRK KLG D Sbjct: 151 TSYEFRLLSYLMHHSDKVVSKTELIEHLYDQDFDK--DSNTIEVFIRRLRK----KLGVD 204 Query: 209 PVDSKRFLGYSI 220 +++ R LGY I Sbjct: 205 SIETVRGLGYRI 216 >gi|332673251|gb|AEE70068.1| DNA-binding response regulator [Helicobacter pylori 83] Length = 223 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 32/231 (13%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55 M VL+ ++ V G I + G++++GF SLE E+L D+ + ++ Sbjct: 1 MRVLLIEKNSVLGGEI----EKGLNVKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 + + RI HS + ++ SD P+ + + F+ G DD + KP +R I A VA I Sbjct: 52 DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARI 109 Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RL+ +N E G + + D GR+ EV+G+ F +L +L +R + Sbjct: 110 EARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQI 162 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+K Q+ AI+ E V NV+E I+++R+K+ LG V++ R GY Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETIRRRGY 212 >gi|331082730|ref|ZP_08331853.1| hypothetical protein HMPREF0992_00777 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400349|gb|EGG79991.1| hypothetical protein HMPREF0992_00777 [Lachnospiraceae bacterium 6_1_63FAA] Length = 222 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 106/219 (48%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++++ AL ++G E + FE+ Q ARE + +I G Sbjct: 4 IIVIEDDKVLREALTALLRENGY--EVCQIVRFEKTEQQIAREKADLVLLDIILPGTNGQ 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S+VP+I ++ + G DD + KP + +L ++ A++RRLK Sbjct: 62 EILRNLRRISEVPVIMLTSKTGETDEILAMSYGADDYITKPYNPALLLLKIEALFRRLKP 121 Query: 122 SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E VF + + Q L + E I YL+ NRGK V++ ++ ++ Sbjct: 122 QEKQEELEYRGVFLNPLKSTLRYQDREIVLSKNEISIFHYLLKNRGKIVSRDELMDYLWE 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D V++N + +I++LRKKL ++++R GY Sbjct: 182 CND-FVDDNTLTVNINRLRKKLEEIELTGVIETRRRQGY 219 >gi|257868021|ref|ZP_05647674.1| DNA binding response regulator [Enterococcus casseliflavus EC30] gi|257874351|ref|ZP_05654004.1| DNA binding response regulator [Enterococcus casseliflavus EC10] gi|257802104|gb|EEV31007.1| DNA binding response regulator [Enterococcus casseliflavus EC30] gi|257808515|gb|EEV37337.1| DNA binding response regulator [Enterococcus casseliflavus EC10] Length = 230 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 5/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125 IR S+VP+I +S + + G DD + KP +LA++ A+ RR + S+ + Sbjct: 67 IRKKSEVPIIFLSSMDQQMNQIMAMNMGADDYLTKPFDLAFVLAKIQALLRRSYQYSHQQ 126 Query: 126 A---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 A E G + + + QGE PL E RIL L+ +RGK VAK I ++ + Sbjct: 127 ALTFEIGQVTFYPTENVLKKQGEQLPLSPNEARILSLLLQHRGKIVAKETIIEMLWN-SE 185 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ N + ++++LRKKL D + + + GY I+ Sbjct: 186 EFIDNNTLAVNMTRLRKKLSQIELSDLIQTVKNKGYLIE 224 >gi|206891181|ref|YP_002249203.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743119|gb|ACI22176.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 227 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 102/202 (50%), Gaps = 16/202 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LID L G+ A + DDG + +W + + D+ ++ L K E Sbjct: 17 LLID--YLKASGFEAFWLDDGARVI--------QWTKENC-PDLIILDVMLPNKDG--FE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR+ S +P+I ++ + + G DD + KP RE++ARV AI+RR+ Sbjct: 64 ICREIRSFSTIPIIMVTARIEEVDRIVGLELGADDYICKPFSPRELIARVKAIFRRMNFK 123 Query: 123 NNRAETGPIRVFSDGRDPE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++A + P + D + + G+ L E R+L+ L++N G+ ++Q+ +Y Sbjct: 124 DDKAISFPSGFYLDENSLKAFLNGQELHLTTVEFRLLKILISNPGRVFTRSQLMDIMYP- 182 Query: 181 FDEAVEENVVESHISKLRKKLR 202 + V + ++SHI KLRKK++ Sbjct: 183 DNRIVSDRTIDSHIKKLRKKIK 204 >gi|56708585|ref|YP_170481.1| two-component response regulator [Francisella tularensis subsp. tularensis SCHU S4] gi|110671056|ref|YP_667613.1| two-component response regulator [Francisella tularensis subsp. tularensis FSC198] gi|118498037|ref|YP_899087.1| two-component response regulator [Francisella tularensis subsp. novicida U112] gi|134301461|ref|YP_001121429.1| two-component response regulator [Francisella tularensis subsp. tularensis WY96-3418] gi|187931186|ref|YP_001891170.1| two-component response regulator [Francisella tularensis subsp. mediasiatica FSC147] gi|194323262|ref|ZP_03057046.1| response regulator receiver domain protein [Francisella tularensis subsp. novicida FTE] gi|224457767|ref|ZP_03666240.1| two-component response regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|254368789|ref|ZP_04984802.1| two-component response regulator [Francisella tularensis subsp. holarctica FSC022] gi|254371214|ref|ZP_04987216.1| two-component response regulator [Francisella tularensis subsp. tularensis FSC033] gi|254373393|ref|ZP_04988881.1| two-component response regulator [Francisella tularensis subsp. novicida GA99-3549] gi|254374856|ref|ZP_04990337.1| hypothetical protein FTDG_01033 [Francisella novicida GA99-3548] gi|254875447|ref|ZP_05248157.1| two component system response regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|56605077|emb|CAG46190.1| Two-component response regulator [Francisella tularensis subsp. tularensis SCHU S4] gi|110321389|emb|CAL09573.1| Two-component response regulator [Francisella tularensis subsp. tularensis FSC198] gi|118423943|gb|ABK90333.1| two-component response regulator [Francisella novicida U112] gi|134049238|gb|ABO46309.1| Two-component response regulator [Francisella tularensis subsp. tularensis WY96-3418] gi|151569454|gb|EDN35108.1| two-component response regulator [Francisella tularensis subsp. tularensis FSC033] gi|151571119|gb|EDN36773.1| two-component response regulator [Francisella novicida GA99-3549] gi|151572575|gb|EDN38229.1| hypothetical protein FTDG_01033 [Francisella novicida GA99-3548] gi|157121710|gb|EDO65880.1| two-component response regulator [Francisella tularensis subsp. holarctica FSC022] gi|187712095|gb|ACD30392.1| two-component response regulator [Francisella tularensis subsp. mediasiatica FSC147] gi|194322626|gb|EDX20106.1| response regulator receiver domain protein [Francisella tularensis subsp. novicida FTE] gi|254841446|gb|EET19882.1| two component system response regulator [Francisella tularensis subsp. tularensis MA00-2987] gi|282159813|gb|ADA79204.1| Two-component response regulator [Francisella tularensis subsp. tularensis NE061598] gi|332678759|gb|AEE87888.1| DNA-binding response regulator [Francisella cf. novicida Fx1] Length = 228 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 78/147 (53%), Gaps = 7/147 (4%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IR +VP+I ++ L+ + D G DD + KP +E++AR+ AI RR+ Sbjct: 60 LEVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRI 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ IR +P + G + P+ ++E +L L+ N G+ V KTQ+ Sbjct: 120 DTRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLL 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 +Y D+ ++ N +E H+ LRKK+ Sbjct: 180 EEVYS-TDKEMDTNTLEVHMHNLRKKI 205 >gi|87121223|ref|ZP_01077113.1| two-component system regulatory protein [Marinomonas sp. MED121] gi|86163380|gb|EAQ64655.1| two-component system regulatory protein [Marinomonas sp. MED121] Length = 221 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 5/164 (3%) Query: 57 GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G L++ + +RA + + P++ ++ + + D+G DD + KP + RE+ AR A+ Sbjct: 56 GMSGLQILKQLRARANETPVLILTARDQMDDRVILLDAGADDYLTKPFNFRELEARCRAL 115 Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + N E G + + D R V+GE+ + RE R+LE + + G+ ++K +I Sbjct: 116 LRRHHGYAANVTEHGNLTINRDARQVMVKGEIQSITNREFRLLEIFLGHLGRVLSKDEIT 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ FDE N +E ++ +LRKKL + + + R LGY Sbjct: 176 EHLFN-FDETPGPNAIELYVGRLRKKLVDS--SLTISTLRGLGY 216 >gi|229175730|ref|ZP_04303236.1| Two-component response regulator vanRB [Bacillus cereus MM3] gi|228607681|gb|EEK64997.1| Two-component response regulator vanRB [Bacillus cereus MM3] Length = 216 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV A+ RR Sbjct: 58 ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 117 Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + + + S V G L +E IL L+ NRGK ++++ + + ++ Sbjct: 118 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEILYTLLQNRGKVLSRSDLLNKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ + V+++HI LRK KLG + + + +GY I+ Sbjct: 178 G-YEHYGDVRVIDTHIKNLRK----KLGIPYIKTVKGIGYKIE 215 >gi|330896968|gb|EGH28534.1| two component transcriptional regulator [Pseudomonas syringae pv. japonica str. M301072PT] gi|330977797|gb|EGH77700.1| two component transcriptional regulator [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 227 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 105/220 (47%), Gaps = 9/220 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D L+ G +A G++L+ S + +A+ DV ++ L E + Sbjct: 4 LLCEDDELIASGIVAGLHAQGLNLDRVGSASAAHAILDAAQFDVMILDLGL--PDEDGIS 61 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R+ +P++ ++ + + +G DD + KP RE+ AR+ + RR+ Sbjct: 62 LLRSLRSRGHNIPVLILTARDDVDDRVKGLHAGADDYMVKPFDLRELFARLHTLVRRVAG 121 Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N E G + R+ + G L RRE+ +L L+ N G+ ++ Q+ ++YG Sbjct: 122 RTVNHIEHGILTYDPSTRETWLSGTAIDLSRREQAVLLALLNNPGRVLSLEQLKDSVYGF 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE VE N + HI LR+ KLG +++ R GY + Sbjct: 182 TDE-VESNALNVHIFHLRR----KLGGQIIETVRGSGYRL 216 >gi|315123018|ref|YP_004065024.1| response regulator [Pseudoalteromonas sp. SM9913] gi|315016778|gb|ADT70115.1| response regulator [Pseudoalteromonas sp. SM9913] Length = 219 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 109/222 (49%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D LV G +G S+E +++ S ++ ++ L G G ++ Sbjct: 3 LLLVEDDHLVAQGLCRSLRQEGYSVEHSATVKHALQCLGSGEIELVILDLGLPDGDGSQI 62 Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L + I+A +V P++ ++ S+ + D G DD + KP E+ AR+ RR+ Sbjct: 63 L---KHIKAQKKVIPVVILTARSSIDDKVQGLDMGADDYLAKPFEPAELFARLRVASRRV 119 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + G + + + + E+ LPR+E +L+ L+ N+G+ +K Q+ + +Y Sbjct: 120 NQAQSSLLQCGDVTMDTSAHSVTLNDELLSLPRKEYMLLKALLENQGRVQSKQQLENKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E V N +E HI LRKK + D + + R +GY + Sbjct: 180 Q-WGEEVGSNTIEVHIHHLRKKFPS----DFIKTLRGIGYVV 216 >gi|260777188|ref|ZP_05886082.1| two-component system response regulator QseB [Vibrio coralliilyticus ATCC BAA-450] gi|260606854|gb|EEX33128.1| two-component system response regulator QseB [Vibrio coralliilyticus ATCC BAA-450] Length = 218 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 6/150 (4%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130 + P++ +S L + + G DD + KP E+LAR+ A+ RR ++++ G Sbjct: 72 KTPVLILSARDELNDRVYGLNHGADDYLVKPFQLEELLARMGALIRRSAGMADDTIVVGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V + V GE L E +IL YL+ N G+ ++KTQI ++G +DE+ N + Sbjct: 132 VSVSVNSHKVAVAGECINLTPNEFKILLYLVTNAGRVLSKTQILQNMHG-WDESAGLNSI 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E HI LRKK+ +++ R +GY I Sbjct: 191 EVHIHNLRKKMPK----GTIENIRGVGYII 216 >gi|315497642|ref|YP_004086446.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] gi|315415654|gb|ADU12295.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] Length = 233 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 3/143 (2%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R P++ +S ++T + G DD + KP H E++AR+ A+ RR Sbjct: 60 LEVLRQLRVGKVNTPVMILSGTSEIETKVKTLGGGADDYMTKPFHKDELIARIHAVVRRS 119 Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + + +TG I V D + EV G L +E +LE L +G + K + +Y Sbjct: 120 KGHAQSVIKTGDIIVNLDAKTVEVAGNRVHLTGKEYEMLELLSLRKGTTLTKEMFLNHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G DE E +++ I KLRKKL Sbjct: 180 GGMDEP-ELKIIDVFICKLRKKL 201 >gi|158530295|gb|ABW71856.1| putative regulator [Streptomyces refuineus subsp. thermotolerans] Length = 273 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 7/147 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L R IR S +P+IG + +L+ L ++G DD V KP H RE++AR+ A+ RR + Sbjct: 69 LTLCRQIRNASDIPMIGFACSAALERVL-ALEAGCDDCVVKPYHSRELVARLGALLRRAR 127 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V + A T G ++++ R V+ R+E +L L A K ++ ++ ++ Sbjct: 128 VLSPPALTVGKLQIYPTLRQVRVENRPIETTRKEFELLHLLAAEPDKLFSRAELLRRVWD 187 Query: 180 LFDEAVE-----ENVVESHISKLRKKL 201 D + E +++H+S LRKKL Sbjct: 188 YDDVSAEVTSLASRTIDTHVSSLRKKL 214 >gi|114707174|ref|ZP_01440072.1| response regulator,controls chromosomal replication initiation protein [Fulvimarina pelagi HTCC2506] gi|114537370|gb|EAU40496.1| response regulator,controls chromosomal replication initiation protein [Fulvimarina pelagi HTCC2506] Length = 230 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 3/147 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G+ L +E +LE L +G + K + +YG Sbjct: 121 GHAQSVINTGDLTVNLDAKTVEVGGQRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG 206 DE E +++ I KLRKKL N G Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLANATG 206 >gi|326383061|ref|ZP_08204750.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326198197|gb|EGD55382.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 229 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 25/205 (12%) Query: 34 FEEWLQSSAREDVSAIEAF--------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85 FE + + E VS E L+ G E+ + IRA S VP+I ++ S Sbjct: 26 FEASIVNDGSEAVSTFERVNPDIVLLDLMLPGVSGTEICKTIRAKSAVPVIMVTARDSEI 85 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-------AETGPIRVFSDGR 138 + + G DD V KP RE++AR+ A+ RR V + E GP+R+ Sbjct: 86 DKVVGLELGADDYVTKPYSARELIARIRAVLRRGGVVADDEDAAIGVVEVGPVRMDVQRH 145 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 V G LP +E +LEYL+ N G+ + ++Q+ ++G D + ++ H+ Sbjct: 146 TVTVAGTEVTLPLKEFDLLEYLLRNSGRVLTRSQLIDRVWG-ADYVGDTKTLDVHV---- 200 Query: 199 KKLRNKLGFDPVDSK-----RFLGY 218 K+LR+K+ DP + R LGY Sbjct: 201 KRLRSKVEPDPSQPRHLITVRGLGY 225 >gi|210633428|ref|ZP_03297776.1| hypothetical protein COLSTE_01689 [Collinsella stercoris DSM 13279] gi|210159152|gb|EEA90123.1| hypothetical protein COLSTE_01689 [Collinsella stercoris DSM 13279] Length = 229 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 12/225 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE--FEEWLQSSAREDVSAIEA-FLIGKGE 58 +L++D L+ D L G S++ ++ + E + S I + +G Sbjct: 5 ILLVEDDPLIVDSLTELLAGSGYSVDTADTQQRAIELAVDSGGAHPYQLILLDVTLRQGN 64 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + A VP+I ++ T+ G DD V KP RE+LAR+AA RR Sbjct: 65 GFAVCAAVKEATPDVPVIFLTASDDEFNTVTGLTMGADDYVAKPFRPRELLARIAATIRR 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + S GPIR+ +D E +G L E R+L N GK + + +I A++ Sbjct: 125 SQPSRRVVSLGPIRIDTDRAYVEREGAELTLSALEYRLLLLFATNPGKLITRDKIRDALW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 +EEN + +I K+LR+K+ DP + + R LGY Sbjct: 185 DSAGTYIEENTLSVYI----KRLRDKIEGDPSRPELIQTVRGLGY 225 >gi|295108701|emb|CBL22654.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 227 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 12/151 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE+VL I+ VP+IG+S ++ + +G DD V KP E+LAR+ I Sbjct: 61 GEQVLAE---IKKTKNVPVIGLSAKEDSKSKIFLLKNGADDYVTKPFDIEELLARIETIL 117 Query: 117 RRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR+ SN+ G + + + G + ++ + PL + E IL+ LM + + K Sbjct: 118 RRIYENQYTSNSLLCCGDLNLDTIGMEATLKKQKLPLTKNEFAILKMLMEHPQQVFTKDM 177 Query: 173 IFSAIYGLFDEAVE--ENVVESHISKLRKKL 201 I+ L++EA+E EN + HIS LRKK+ Sbjct: 178 IYEQ---LWNEALEGSENAINVHISNLRKKI 205 >gi|54112871|gb|AAV29069.1| NT02FT1860 [synthetic construct] Length = 228 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 78/147 (53%), Gaps = 7/147 (4%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IR +VP+I ++ L+ + D G DD + KP +E++AR+ AI RR+ Sbjct: 60 LEVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRI 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ IR +P + G + P+ ++E +L L+ N G+ V KTQ+ Sbjct: 120 DTRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLL 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 +Y D+ ++ N +E H+ LRKK+ Sbjct: 180 EEVYS-TDKEMDTNTLEVHMHNLRKKI 205 >gi|37675773|ref|NP_936169.1| DNA-binding response regulator [Vibrio vulnificus YJ016] gi|37200312|dbj|BAC96139.1| DNA-binding response regulator [Vibrio vulnificus YJ016] Length = 218 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 11/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60 +LI+D L+ + G +++ LE + S+ + ED +A+ L Sbjct: 3 LLLIEDDTLLGQSMVTSLSRHGYTVDW---LEKGSGVTSALKTEDFTAVILDLTLPDIDG 59 Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R IR+ +P++ ++ ++ + D G DD + KP E+LAR+ + RR Sbjct: 60 LDVLRNIRSAGFNLPVVILTARDDIKDRVQGLDRGADDYLGKPFALEELLARLRVVIRRQ 119 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S E G + + + Q V L R E +IL LM N G+ ++K Q+ +++ Sbjct: 120 SGSATEVIEVGELNLSLSDQSIRYQEAVLKLTRNEFKILAALMTNAGRVMSKDQLQQSLH 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +D++ +N +E HI LRKK N P+ + R +GY I+ Sbjct: 180 G-WDDSASDNAIEVHIHNLRKKAPNV----PIKNIRGVGYIIE 217 >gi|148557747|ref|YP_001265329.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148502937|gb|ABQ71191.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 231 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L ++ A Q P++ +S + + + G DD V KP H E++AR+ AI RR K Sbjct: 63 LKKLRGAKVQTPVMILSGIGEMDSKVRALGFGADDYVTKPFHREELVARIHAIVRRSKGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + TG + V D + EV G L +E +LE L +G + K + +YG Sbjct: 123 SQSVIRTGKLAVNLDAKTVEVDGARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYGGM 182 Query: 182 DEAVEENVVESHISKLRKKL 201 DE E +++ I KLRKKL Sbjct: 183 DEP-ELKIIDVFICKLRKKL 201 >gi|209965047|ref|YP_002297962.1| cell cycle transcriptional regulator CtrA [Rhodospirillum centenum SW] gi|209958513|gb|ACI99149.1| cell cycle transcriptional regulator CtrA [Rhodospirillum centenum SW] Length = 234 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L R+ A P++ +S L + G DD + KP RE++AR+ AI RR K Sbjct: 63 LRRLRSARVTTPILILSGLSELDHKIKGLGVGADDYLTKPFDKRELVARLQAIVRRSKGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S++ TG + V D R EV G+ L +E ILE L +G + K + +YG Sbjct: 123 SDSIIRTGKLTVNLDARTVEVDGQPLHLTGKEYGILELLSLRKGTTLTKEMFLNHLYGGM 182 Query: 182 DEAVEENVVESHISKLRKKL 201 DE E +++ + KLRKKL Sbjct: 183 DEP-ELKIIDVFVCKLRKKL 201 >gi|88797980|ref|ZP_01113567.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Reinekea sp. MED297] gi|88779177|gb|EAR10365.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Reinekea sp. MED297] Length = 225 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 85/160 (53%), Gaps = 3/160 (1%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L++ R +RA Q P+I ++ + +D +SG DD + KP E+LARV A+ RR Sbjct: 60 LDVIRELRAAGQDYPIIVLTARGHWRDKVDGLESGADDYLAKPFIFDELLARVKALLRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++++ G + + + V G L E LEYLM ++ K V+KT++ +Y Sbjct: 120 VGMASSTLTIGLYELDTSAKSVRVDGRSVELTSYEYNTLEYLMTHKNKVVSKTELTEHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D + NV+E I +LRKKL +P+ ++R LGY Sbjct: 180 EQ-DYDRDSNVIEVFIRRLRKKLDPDGERNPILTQRGLGY 218 >gi|319796546|ref|YP_004158186.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315599009|gb|ADU40075.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 224 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 +E+ + +RA SQ+P++ ++ S++ + D G DD + KP +E+ ARV A+ RR Sbjct: 61 IEILKRLRARGSQLPVLVLTAADSVEERVKGLDHGADDYMAKPFSLQELEARVRALTRRG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++N GP+ GR + G++ L RE +LE L+ G+ V+K Q+ + Sbjct: 121 MGATSNAIRHGPLVYDQAGRVATIDGKMIELSARELGLLEVLLQRAGRLVSKDQLVDRLC 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E +I +LRKK+ G + + R LGY ++ Sbjct: 181 E-WGEEVSLNAIEVYIHRLRKKIEK--GPVRIATVRGLGYCLE 220 >gi|262200993|ref|YP_003272201.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262084340|gb|ACY20308.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 228 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 86/171 (50%), Gaps = 16/171 (9%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ + +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EICKALRTRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGD 121 Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E GP+R+ + V GE LP +E +LEYL+ N G+ + + Q+ Sbjct: 122 LAEEDLDIGILEAGPVRMDVERHIVAVNGEQITLPLKEFDLLEYLLRNAGRVLTRGQLID 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 ++G D + ++ H+ K+LR+K+ DP + K R LGY ++ Sbjct: 182 RVWG-ADYVGDTKTLDVHV----KRLRSKIEPDPANPKHLITVRGLGYKLE 227 >gi|148556346|ref|YP_001263928.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148501536|gb|ABQ69790.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 220 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 10/162 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R R P++ ++ S + D+G DD + KP E++AR+ A+ RR Sbjct: 63 LDRWRREGKDTPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS-G 121 Query: 123 NNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N +E G +R+ + + GE L +E ++L YL+ ++GK V++T++ IY Sbjct: 122 NASSELIAGDVRLDTRSGKVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQ 181 Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + N +E ++++RK KLG D + + R LGYS+D Sbjct: 182 DFDR--DSNTIEVFVTRIRK----KLGQDVITTIRGLGYSLD 217 >gi|15889704|ref|NP_355385.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|15157614|gb|AAK88170.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 234 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G+ L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG 206 DE E +++ I KLRKKL N G Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLANAAG 206 >gi|302187207|ref|ZP_07263880.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae 642] gi|330974381|gb|EGH74447.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 225 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 108/219 (49%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + + D++ I+ L G G L Sbjct: 3 LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGG--L 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R + P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR Sbjct: 61 DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL + + F P+++ R +GY Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGY 218 >gi|160878177|ref|YP_001557145.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426843|gb|ABX40406.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 228 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 99/213 (46%), Gaps = 17/213 (7%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 +GY +DG S L+ + + D+ + ++ G +E+ R IR SQ Sbjct: 24 EGYTVDIANDGRS-----------GLEKALKSDIDLVLLDVMLPGLSGIEVCRRIRMESQ 72 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128 VP+I ++ + + D G DD + KP E+LAR+ R S+ A+ Sbjct: 73 VPIIMLTAKDDVTDKVAGLDMGADDYMTKPFAIEELLARIRVALSRHSKSSAEAKQDVLT 132 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G +++ E L ++E +LEYLM N+ + + Q+ + ++ ++ + Sbjct: 133 HGELKLNLTSHSANYGEEDLTLTKKEYELLEYLMRNKNIALTREQLLNNVWD-YEYFGDT 191 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVV+ +I LR+K+ +K G + + R +GY I Sbjct: 192 NVVDVYIRYLRQKIDDKYGVHLISTVRGVGYII 224 >gi|15966471|ref|NP_386824.1| response regulator,controls chromosomal replication initiation protein [Sinorhizobium meliloti 1021] gi|307300492|ref|ZP_07580272.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307318357|ref|ZP_07597792.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|9858148|gb|AAG01017.1|AF288464_1 response regulator CtrA [Sinorhizobium meliloti] gi|15075742|emb|CAC47297.1| Cell cycle transcriptional regulator CtrA, autoregulated, response regulator [Sinorhizobium meliloti 1021] gi|306896039|gb|EFN26790.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306904658|gb|EFN35242.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 233 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G+ L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG 206 DE E +++ I KLRKKL N G Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLANAAG 206 >gi|330718114|ref|ZP_08312714.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537] Length = 228 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 3/132 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAETG 129 + P++ ++ SL ++ F+ G DD + KP + E+L RV A+ RR V +N E G Sbjct: 75 ETPVLILTAKSSLDDKIEGFNVGADDYLTKPFYREELLVRVKALLRRSGVFSEDNTIEVG 134 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + + R +V G+ L +E IL YL N+ + + QIF ++G+ D NV Sbjct: 135 DVLINLENRGVQVHGQPVKLVGKEFDILTYLAQNKNIIITREQIFDRVWGI-DSDTTINV 193 Query: 190 VESHISKLRKKL 201 V +++ LR+KL Sbjct: 194 VNIYLNNLRRKL 205 >gi|221201787|ref|ZP_03574824.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2M] gi|221207708|ref|ZP_03580716.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2] gi|221214547|ref|ZP_03587517.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD1] gi|221165437|gb|EED97913.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD1] gi|221172554|gb|EEE04993.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2] gi|221178207|gb|EEE10617.1| DNA-binding response regulator TctD [Burkholderia multivorans CGD2M] Length = 225 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 5/202 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D A + + L + +++ E + + + R D ++ L G G++V Sbjct: 3 LLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L R+ R + VP++ ++ + S+ +D F +G DD V KP RE++AR+ A+ RR Sbjct: 63 L--ARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V + + G + R+ L RRE ILE LM + K V+K ++ +++ Sbjct: 121 GVGSTQLVCGDLVYAFGTREFRCGDAPLMLRRREHAILETLMLQQNKTVSKARLMDSVFA 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 L DE + ++ +I +LRK L Sbjct: 181 LDDEP-SADAIDIYIHRLRKHL 201 >gi|62261777|gb|AAX78015.1| unknown protein [synthetic construct] Length = 263 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 78/147 (53%), Gaps = 7/147 (4%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IR +VP+I ++ L+ + D G DD + KP +E++AR+ AI RR+ Sbjct: 86 LEVLRNIRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRI 145 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ IR +P + G + P+ ++E +L L+ N G+ V KTQ+ Sbjct: 146 DTRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLL 205 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 +Y D+ ++ N +E H+ LRKK+ Sbjct: 206 EEVYST-DKEMDTNTLEVHMHNLRKKI 231 >gi|325293784|ref|YP_004279648.1| cell cycle transcriptional regulator ctrA [Agrobacterium sp. H13-3] gi|325061637|gb|ADY65328.1| cell cycle transcriptional regulator ctrA [Agrobacterium sp. H13-3] Length = 234 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G+ L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG 206 DE E +++ I KLRKKL N G Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLANAAG 206 >gi|153811804|ref|ZP_01964472.1| hypothetical protein RUMOBE_02197 [Ruminococcus obeum ATCC 29174] gi|149832207|gb|EDM87292.1| hypothetical protein RUMOBE_02197 [Ruminococcus obeum ATCC 29174] Length = 227 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 102/208 (49%), Gaps = 15/208 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 +++DD + D + +G ++ ++ E +L+ + ++ ++ L G GE+ Sbjct: 5 ILIVDDDMAINDMLVKYLRKNGYITYSAYSGTEALLFLEKQ-KVNLIILDLMLPGLSGEQ 63 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 VL I+ VP+IG+S ++ + +G DD V KP E+LAR+ I RR+ Sbjct: 64 VLAE---IKKTKNVPVIGLSAKEDSKSKIFLLKNGADDYVTKPFDIEELLARIETILRRI 120 Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 SN+ G + + + G + ++ + PL + E IL+ LM + + K I+ Sbjct: 121 YENQYTSNSLLCCGDLNLDTIGMEATLKNQKLPLTKNEFAILKMLMEHPQQVFTKDMIYE 180 Query: 176 AIYGLFDEAVE--ENVVESHISKLRKKL 201 L++E +E EN + HIS LRKK+ Sbjct: 181 Q---LWNETLEGTENAINVHISNLRKKI 205 >gi|260431669|ref|ZP_05785640.1| transcriptional regulatory protein TctD [Silicibacter lacuscaerulensis ITI-1157] gi|260415497|gb|EEX08756.1| transcriptional regulatory protein TctD [Silicibacter lacuscaerulensis ITI-1157] Length = 222 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 5/169 (2%) Query: 57 GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G LE+ R +RA P+I ++ L + DSG DD + KP E+ AR+ A+ Sbjct: 56 GTDGLEVLRAMRARGDGTPVILLTARSELSDRVKGLDSGADDYLVKPFEMDELEARIRAL 115 Query: 116 YRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + +T G + R +G +PRRE +LE L+ G+ V+K Q+ Sbjct: 116 SRRKNLDFGAVQTIGALAFDRATRQVLAEGAPLDIPRRETAVLECLLDRAGRIVSKAQLT 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +YG+ + V++ +E H+S+LRK+L G + + R LGY ++ Sbjct: 176 DHVYGVGAD-VDDTAIEPHVSRLRKRLAAH-GV-VIKTARGLGYMLETT 221 >gi|239818155|ref|YP_002947065.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239804732|gb|ACS21799.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 223 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 +E+ + +RA SQ+P++ ++ S++ + D G DD + KP +E+ ARV A+ RR Sbjct: 61 IEILKRLRARGSQLPVLVLTAADSVEERVKGLDHGADDYMAKPFSLQELEARVRALTRRG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++N GP+ GR + G++ L RE +LE L+ G+ V+K Q+ + Sbjct: 121 MGATSNTIRHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E +I +LRKK+ G + + R LGY ++ Sbjct: 181 E-WGEEVSLNAIEVYIHRLRKKIEK--GPVRIATVRGLGYCLE 220 >gi|170756456|ref|YP_001779877.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra] gi|169121668|gb|ACA45504.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra] Length = 233 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 12/164 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125 IR ++ P+I +S S +T L+ + G DD + KP E++ARV + RR L+ S + Sbjct: 70 IRKITKAPIIIVSAKTSKKTKLELLEKGADDFICKPFDPDEVVARVNSNLRRYLEFSTDE 129 Query: 126 AETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I + D ++ +V + L RE +LE L+ N K +K IF +I+G Sbjct: 130 EKKNNILSYKDITLNKESKEVKVAQTIVILTAREFAVLELLLNNPNKVYSKANIFESIWG 189 Query: 180 LFDEAV-EENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSI 220 +E + ++N V H+S+LR KL N G D +++ +GY + Sbjct: 190 --EEFLGDDNTVNVHVSRLRSKLSKANNNGEDYIETVWAMGYRL 231 >gi|150397803|ref|YP_001328270.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|150029318|gb|ABR61435.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 233 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G+ L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVISTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG 206 DE E +++ I KLRKKL N G Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLANAAG 206 >gi|255292688|dbj|BAH89795.1| two component response regulator [uncultured bacterium] Length = 219 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 78/149 (52%), Gaps = 6/149 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPI 131 P+I ++ + ++ ++G DD + KP E+ AR+ ++ RR + N T GP+ Sbjct: 73 TPVIILTALDQVSDRIEGLNAGADDYLVKPFDLSELSARIGSVARRYSGNPNPILTHGPL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + R G PL RE + E +A G+ ++K Q+ +Y FD VE N +E Sbjct: 133 DIDLAARSVHRDGRHVPLTAREWALFEAFLARPGQLLSKAQLEEKLYA-FDAEVESNTIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 H+S+LRKKL + + ++++R +GY + Sbjct: 192 VHVSRLRKKLGSAI----IETERGMGYRL 216 >gi|83649045|ref|YP_437480.1| response regulator [Hahella chejuensis KCTC 2396] gi|83637088|gb|ABC33055.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 228 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 4/154 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 + P++ ++ Q + ++G DD + KP H E++AR+ A+ RR S+ + GP Sbjct: 72 EFPILILTARGHWQDKVSGLEAGADDYLVKPFHVAELMARLGALLRRSSGFSSPVIQAGP 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189 + + + + ++ G L E LEYL+ G+ V+KT++ +Y FD + NV Sbjct: 132 MTLDTRAKLVQIDGSALELTAYEYNTLEYLVHRAGQAVSKTELTEHLYAQDFDR--DSNV 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +E I +LRKKL P+ + R GY +W+ Sbjct: 190 IEVFIGRLRKKLDPDGVNKPITTLRGQGYRFNWS 223 >gi|75760136|ref|ZP_00740196.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218900181|ref|YP_002448592.1| DNA-binding response regulator [Bacillus cereus G9842] gi|74492373|gb|EAO55529.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218540655|gb|ACK93049.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 221 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 84/163 (51%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV A+ RR Sbjct: 63 ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 122 Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + + + S V G L +E I+ L+ NRGK ++++ + + ++ Sbjct: 123 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ + V+++HI LRK KLG + + + +GY I+ Sbjct: 183 G-YEHYGDVRVIDTHIKNLRK----KLGITYIKTVKGIGYKIE 220 >gi|15645657|ref|NP_207833.1| response regulator [Helicobacter pylori 26695] gi|2314190|gb|AAD08088.1| response regulator [Helicobacter pylori 26695] Length = 223 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 32/231 (13%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55 M VL+ ++ V G I + G++++GF SLE E+L D+ + ++ Sbjct: 1 MRVLLIEKNSVLGGEI----EKGLNVKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 + + RI HS + ++ SD P+ + + F+ G DD + KP +R I A VA I Sbjct: 52 DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARI 109 Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RL+ +N E G + + D GR+ EV+G+ F +L +L +R + Sbjct: 110 EARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQI 162 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+K Q+ AI+ E V NV+E I+++R+K+ LG V++ R GY Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISMVETVRRRGY 212 >gi|228903532|ref|ZP_04067655.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 4222] gi|228910870|ref|ZP_04074679.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 200] gi|228968144|ref|ZP_04129148.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar sotto str. T04001] gi|228791579|gb|EEM39177.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar sotto str. T04001] gi|228848821|gb|EEM93666.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 200] gi|228856108|gb|EEN00645.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 4222] Length = 216 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 84/163 (51%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV A+ RR Sbjct: 58 ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 117 Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + + + S V G L +E I+ L+ NRGK ++++ + + ++ Sbjct: 118 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ + V+++HI LRK KLG + + + +GY I+ Sbjct: 178 G-YEHYGDVRVIDTHIKNLRK----KLGITYIKTVKGIGYKIE 215 >gi|166032814|ref|ZP_02235643.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC 27755] gi|166027171|gb|EDR45928.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC 27755] Length = 235 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 24/214 (11%) Query: 3 VLIDD----RALVKD-----GYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAF 52 +++DD R LVKD GY L DG+ ++E F A +D++ I Sbjct: 17 LVVDDESRMRKLVKDFLEREGYQVLEAGDGLEAMEAF-----------YAEKDIALIILD 65 Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 ++ + R IR S+VP+I ++ + L FD GVD+ ++KP + ++ARV Sbjct: 66 VMMPKMDGWQTCREIRQSSKVPIIMLTARGDERDELQGFDLGVDEYISKPFSPKILVARV 125 Query: 113 AAIYRRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 A+ RR V ++ E G I V +V G+ L +E +L Y + N+G +++ Sbjct: 126 NALLRRSNVLDADEHVEAGGIVVDKAAHQVQVDGKDVELSYKEFELLSYFLENQGIALSR 185 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 +I + ++ +D + +++H+ KLR KL K Sbjct: 186 EKILNNVWN-YDYFGDARTIDTHVKKLRSKLGEK 218 >gi|110802452|ref|YP_698343.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682953|gb|ABG86323.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 229 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 8/141 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR P+I IS +++ ++ G DD ++KP E+LARV A+ RR K++N+ Sbjct: 70 IRKIKNTPIIVISAKTTMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKITNSSE 129 Query: 127 ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 I+ + R+ +V+GE L +E +ILE L+ N K K +F ++ Sbjct: 130 GVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETVWE-- 187 Query: 182 DEAV-EENVVESHISKLRKKL 201 +E + ++N + HIS LR K+ Sbjct: 188 EEFLGDDNTINVHISNLRNKI 208 >gi|319791109|ref|YP_004152749.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315593572|gb|ADU34638.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 234 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 77/133 (57%), Gaps = 3/133 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128 S++P++ ++D ++ +SG DD ++KP+ E+ ARV A+ RR + + +E Sbjct: 72 SRLPILFVTDSRDEADMVEALNSGADDFMDKPVRAGELEARVTALLRRSYPAKHESELVF 131 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 GP + R +VQG++ L RE + +L N G+ +++ + A++GL EA+ + Sbjct: 132 GPYHFYPPSRVLKVQGKLVELKNREYELALFLFQNLGRLLSREHLHEAVWGLGVEALSRS 191 Query: 189 VVESHISKLRKKL 201 +++H+S+LR KL Sbjct: 192 -LDTHVSRLRTKL 203 >gi|161523212|ref|YP_001578224.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189348931|ref|YP_001944559.1| signal transduction response regulator [Burkholderia multivorans ATCC 17616] gi|160340641|gb|ABX13727.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189332953|dbj|BAG42023.1| signal transduction response regulator [Burkholderia multivorans ATCC 17616] Length = 225 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 5/202 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D A + + L + +++ E + + + R D ++ L G G++V Sbjct: 3 LLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L R+ R + VP++ ++ + S+ +D F +G DD V KP RE++AR+ A+ RR Sbjct: 63 L--ARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V + + G + R+ L RRE ILE LM + K V+K ++ +++ Sbjct: 121 GVGSTQLVCGDLVYAFGTREFRCGDAPLVLRRREHAILETLMLQQNKTVSKARLMDSVFA 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 L DE + ++ +I +LRK L Sbjct: 181 LDDEP-SADAIDIYIHRLRKHL 201 >gi|283458744|ref|YP_003363383.1| response regulator [Rothia mucilaginosa DY-18] gi|283134798|dbj|BAI65563.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 228 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 14/208 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGE 58 ++++D + D L G EGF ++ + L + RE + ++ G Sbjct: 5 ILIVEDEEALSDPLAFLLGR-----EGFQTIVVDNGLDALPVFDREGADLVLLDVMLPGM 59 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 60 SGMEVCRKLREVSSVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLRR 119 Query: 119 LKVSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + A + GP+R+ D V GE +P +E +LE L+ N G+ + + Q+ Sbjct: 120 RSAETDSATESVLQGGPVRMDIDRHVVTVNGEEISMPLKEFELLEILLRNVGRVMTRGQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G D + ++ HI +LR K+ Sbjct: 180 IERVWG-ADYVGDTKTLDVHIKRLRSKI 206 >gi|15675198|ref|NP_269372.1| putative response regulator [Streptococcus pyogenes M1 GAS] gi|71910761|ref|YP_282311.1| transcriptional regulatory protein [Streptococcus pyogenes MGAS5005] gi|13622364|gb|AAK34093.1| putative response regulator [Streptococcus pyogenes M1 GAS] gi|71853543|gb|AAZ51566.1| transcriptional regulatory protein [Streptococcus pyogenes MGAS5005] Length = 224 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 2/153 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGP 130 ++P++ ++ L F+ G DD + KP + E+ R+ A+ +R K ++ G Sbjct: 72 KIPVLIMTAKEGLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTGKFADKNISFGN 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V ++ +V+G+V L +E +L YL+ N+ + KTQIF ++G FD +VV Sbjct: 132 LVVDLARKEVKVEGKVVELLGKEFDLLVYLLQNQNVILPKTQIFDRLWG-FDSDTTISVV 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E +ISK+RKKL+ + + + R +GY + N Sbjct: 191 EVYISKIRKKLKGTCFVNRLQTLRSVGYILKNN 223 >gi|307709530|ref|ZP_07645985.1| response regulator [Streptococcus mitis SK564] gi|307619723|gb|EFN98844.1| response regulator [Streptococcus mitis SK564] Length = 218 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 109/225 (48%), Gaps = 18/225 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++G D G E + + +E L+ + +V+ + + LE Sbjct: 4 LIVEDEEMIREGVSDYLTDCG--YETIEAADGQEALEKFSSYEVALVLLDIQMPKLNGLE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 62 VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRY--- 118 Query: 123 NNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +TG I + D + + GE P+ +E IL+YL+ N G+ + ++QI A Sbjct: 119 ---YDTGRIFSYKDAKVDFESYSASLAGEEVPINAKELEILDYLVKNEGRALTRSQIIDA 175 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ DE + V++ +I K+LR KL D + + R +GY ++ Sbjct: 176 VWKATDEVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216 >gi|18309930|ref|NP_561864.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18144608|dbj|BAB80654.1| two-component response regulator [Clostridium perfringens str. 13] Length = 229 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 8/141 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR P+I IS +++ ++ G DD ++KP E+LARV A+ RR K++N+ Sbjct: 70 IRKIKNTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKITNSSK 129 Query: 127 ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 I+ + R+ +V+GE L +E +ILE L+ N K K +F ++ Sbjct: 130 GVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETVWE-- 187 Query: 182 DEAV-EENVVESHISKLRKKL 201 +E + ++N + HIS LR K+ Sbjct: 188 EEFLGDDNTINVHISNLRNKI 208 >gi|255327693|ref|ZP_05368759.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] gi|255295367|gb|EET74718.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] Length = 227 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 14/208 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGE 58 ++++D + D L G EGF ++ + L + RE + ++ G Sbjct: 4 ILIVEDEEALSDPLAFLLGR-----EGFQTIVVDNGLDALPVFDREGADLVLLDVMLPGM 58 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 59 SGMEVCRKLREVSSVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLRR 118 Query: 119 LKVSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + A + GP+R+ D V GE +P +E +LE L+ N G+ + + Q+ Sbjct: 119 RSAETDSATESVLQGGPVRMDIDRHVVTVNGEEISMPLKEFELLEILLRNVGRVMTRGQL 178 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G D + ++ HI +LR K+ Sbjct: 179 IERVWG-ADYVGDTKTLDVHIKRLRSKI 205 >gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] gi|254040570|gb|ACT57366.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] Length = 236 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 21/196 (10%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74 Y+ G+DG+ L F EF+ + D+ E + L + +I P Sbjct: 28 YVTDLGEDGIELCKF--YEFDAIILDLGLTDIPGFEVL------RALRVAKI-----STP 74 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGP 130 + +S S++ + SG DD ++KP + E++AR+ AI RR S A+ TG Sbjct: 75 VCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAIVRR---SRGHAQSLIVTGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V D + EVQG L +E +++E L + + K + +Y DE E ++ Sbjct: 132 LSVNLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP-EVKII 190 Query: 191 ESHISKLRKKLRNKLG 206 + I KLRKKL N G Sbjct: 191 DVFICKLRKKLSNAAG 206 >gi|167839173|ref|ZP_02465950.1| DNA-binding response regulator TctD [Burkholderia thailandensis MSMB43] Length = 223 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 60 LEVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L + R E GP+ S R + + L RER +LE L+ G+ + K + I+ Sbjct: 120 LGHEHGRVECGPLAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LRKKL G V + R LGY ++ Sbjct: 180 GL-DESVNADAIEIYVHRLRKKLEGS-GVAIV-TLRGLGYLLE 219 >gi|110798796|ref|YP_695638.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168206916|ref|ZP_02632921.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168209543|ref|ZP_02635168.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168213967|ref|ZP_02639592.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|168215963|ref|ZP_02641588.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|110673443|gb|ABG82430.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|170661678|gb|EDT14361.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170712327|gb|EDT24509.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170714590|gb|EDT26772.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|182381636|gb|EDT79115.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 229 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 8/141 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR P+I IS +++ ++ G DD ++KP E+LARV A+ RR K++N+ Sbjct: 70 IRKIKNTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKITNSSE 129 Query: 127 ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 I+ + R+ +V+GE L +E +ILE L+ N K K +F ++ Sbjct: 130 GVETIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETVWE-- 187 Query: 182 DEAV-EENVVESHISKLRKKL 201 +E + ++N + HIS LR K+ Sbjct: 188 EEFLGDDNTINVHISNLRNKI 208 >gi|307293225|ref|ZP_07573071.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] gi|306881291|gb|EFN12507.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] Length = 221 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 83/150 (55%), Gaps = 8/150 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIR 132 P++ ++ S + D+G DD + KP E++AR+ A+ RR +++ G +R Sbjct: 74 PVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRASGNASSELTAGDVR 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVE 191 + + ++GE L +E ++L YL+ ++GK V++T++ IY FD + N +E Sbjct: 134 LDTRSGKVTLKGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQDFDR--DSNTIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++++RK KLG D + + R LGYS+D Sbjct: 192 VFVTRIRK----KLGADVITTIRGLGYSLD 217 >gi|195978046|ref|YP_002123290.1| TCS transcriptional regulatory protein ciaR [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225868625|ref|YP_002744573.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225870423|ref|YP_002746370.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|195974751|gb|ACG62277.1| TCS transcriptional regulatory protein ciaR [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225699827|emb|CAW93666.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|225701901|emb|CAW99401.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 224 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 86/153 (56%), Gaps = 2/153 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130 ++P++ ++ S+ F+ G DD + KP + E+ R+ A+ +R+ N+++ + G Sbjct: 72 KIPVLIMTAKESIDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRVGKFNDKSLKFGN 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V + ++ +V G+ L +E +L Y++ N+ + K+QIF I+G FD +VV Sbjct: 132 LTVDTTRKEVQVNGQAIELLGKELDLLIYILQNQNVILPKSQIFDRIWG-FDSDTTISVV 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E ++SK+RKKL+ + + + R +GY + N Sbjct: 191 EVYVSKIRKKLKGTDFVNHLQTLRSVGYILKAN 223 >gi|294012297|ref|YP_003545757.1| OmpR-family two-component system response regulator PhoP [Sphingobium japonicum UT26S] gi|292675627|dbj|BAI97145.1| OmpR-family two-component system response regulator PhoP [Sphingobium japonicum UT26S] Length = 221 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 83/150 (55%), Gaps = 8/150 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIR 132 P++ ++ S + D+G DD + KP E++AR+ A+ RR +++ G +R Sbjct: 74 PVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRASGNASSELTAGDVR 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVE 191 + + ++GE L +E ++L YL+ ++GK V++T++ IY FD + N +E Sbjct: 134 LDTRSGKVTLKGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQDFDR--DSNTIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++++RK KLG D + + R LGYS+D Sbjct: 192 VFVTRIRK----KLGADVITTIRGLGYSLD 217 >gi|257054346|ref|YP_003132178.1| response regulator with CheY-like receiver domain-containing protein and winged-helix DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256584218|gb|ACU95351.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 229 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 102/214 (47%), Gaps = 24/214 (11%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ A DG EE+ ++ A D+ ++ L G ++ R +R Sbjct: 21 LRKEGFTAAIATDG-------QQALEEFDRNGA--DIVLLDLMLPGMSGT--DVCRELRQ 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET- 128 S VP+I ++ S + + G DD V KP RE++ARV A+ RR S+ ++ Sbjct: 70 RSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGDSSGDSQQE 129 Query: 129 ------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 GP+R+ + V G PLP +E +LEYL+ N G+ + + Q+ ++G D Sbjct: 130 QTVLIGGPVRMDVERHVVTVNGTEVPLPLKEFDLLEYLLRNVGRVLTRNQLIDRVWG-AD 188 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + ++ H+ +LR K+ + G S R+L Sbjct: 189 YVGDTKTLDVHVKRLRSKIEPEPG-----SPRYL 217 >gi|194397670|ref|YP_002037262.1| VncR response regulator TCS10 [Streptococcus pneumoniae G54] gi|194357337|gb|ACF55785.1| VncR response regulator TCS10 [Streptococcus pneumoniae G54] Length = 218 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 109/225 (48%), Gaps = 18/225 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++G D G E + + +E L+ + +V+ + + LE Sbjct: 4 LIVEDEEMIREGVSDYLTDCG--YETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGLE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 62 VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRY--- 118 Query: 123 NNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +TG I + D + + G+ P+ +E IL+YL+ N G+ + ++QI A Sbjct: 119 ---YDTGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDA 175 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ DE + V++ +I KLRK KL D + + R +GY ++ Sbjct: 176 VWKATDEVPFDRVIDVYIQKLRK----KLDLDCILTVRNVGYKLE 216 >gi|300024709|ref|YP_003757320.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299526530|gb|ADJ24999.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 225 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 5/156 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRA 126 A +VP++ ++ + ++ D+G DD + KP E+LARV A+ RR R Sbjct: 69 AGRRVPVLFLTALGGVDDRVEGLDAGGDDYLVKPFAFSELLARVNALARRPHTIGEETRL 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 + G + + R G+ L RE R+LE LM NRG+ V +T + ++ FD Sbjct: 129 KVGDLEIDLVSRKVTRGGDTIDLQPREFRLLEVLMRNRGRVVTRTMLLERVWSFHFDP-- 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +VVE+HIS+LR K+ + + + R GY+++ Sbjct: 187 KTSVVETHISRLRAKIDKPYDTELIHTIRGCGYTVN 222 >gi|237798950|ref|ZP_04587411.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021804|gb|EGI01861.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 225 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 107/219 (48%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + + D++ I+ L G G L Sbjct: 3 LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGLPGIGG--L 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R + P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR Sbjct: 61 DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL + F P+++ R +GY Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDGSVAFKPIETVRGMGY 218 >gi|160940480|ref|ZP_02087825.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC BAA-613] gi|158437060|gb|EDP14827.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC BAA-613] Length = 226 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 76/144 (52%), Gaps = 2/144 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +SQVP+I ++ + L F GVD+ ++KP + ++ARV AI RR V Sbjct: 65 EVLRTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVEAILRRTNV 124 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S + G I + + G+ L +E +L Y + N+G +++ +I + ++ Sbjct: 125 ASTDSVNVGGICIDKAAHQVTIDGQEIDLSFKEFELLTYFVENQGIALSREKILNNVWN- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR K+ K Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGEK 207 >gi|260888709|ref|ZP_05899972.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC 35185] gi|330839889|ref|YP_004414469.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] gi|260861578|gb|EEX76078.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC 35185] gi|329747653|gb|AEC01010.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] Length = 254 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 88/166 (53%), Gaps = 7/166 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R S VP+I ++ ++ ++ D G DD + KP +E+LARV A R K Sbjct: 88 LEVCRRVREISDVPIIMLTAKDDVEDKVNGLDIGADDYITKPFAIQELLARVRAAIRVHK 147 Query: 121 V--SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + NR E + ++ + V+G++ L ++E +LEY++ N+ + + QI Sbjct: 148 ANEAGNRDERVLAVKDLVLYPGRYEVRVKGDLVELTKKEYSLLEYMLRNKPNVLTRDQIL 207 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D + NVV+ +I LR K+ + + + R +GY+I Sbjct: 208 QEVWG-YDYVGDTNVVDVYIRYLRAKIDERFDDKYIYTVRGVGYAI 252 >gi|332308857|ref|YP_004436707.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332176186|gb|AEE25439.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 224 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 75/134 (55%), Gaps = 5/134 (3%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 +G DD + KP E+ R+ + R L + N++ E GP + + + G L Sbjct: 93 NGADDYLTKPFSFEELHVRLLCLMNRGSLNIKNSKIEHGPFSLDIHFKQLKCGGFDVKLT 152 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-P 209 E +I+E L +N+GK ++ ++ + G +D AV +N +E+H+S RKK+++ LGF+ P Sbjct: 153 PNEYKIIECLFSNQGKVLSSEKLSEYLAGQYD-AVAKNSIEAHLSTARKKVKS-LGFELP 210 Query: 210 VDSKRFLGYSIDWN 223 + +KR GY ++ N Sbjct: 211 IQTKRGFGYFVEQN 224 >gi|322411860|gb|EFY02768.1| Transcriptional regulatory protein ciaR [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 224 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 80/148 (54%), Gaps = 2/148 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGP 130 ++P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K ++ G Sbjct: 72 KIPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTGKFTDKNLAFGN 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V ++ +V G+ L +E +L YL+ N+ + KTQIF ++G FD +VV Sbjct: 132 VVVDLGKKEVQVDGQPIELLGKEFDLLVYLLQNQNVILPKTQIFDRLWG-FDSDTTISVV 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E ++SK+RKKL+ D + + R +GY Sbjct: 191 EVYVSKIRKKLKGTDLVDKLQTLRSVGY 218 >gi|126702209|gb|ABO26808.1| PmrA [Legionella feeleii] Length = 222 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 14/158 (8%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 ++ P+I ++ S++ + D+G DD + KP E+ ARV A+ RR S RA+ Sbjct: 71 NRTPVIILTARESVEDRVKGLDAGADDYMTKPFDLNELSARVRALVRR---SQGRAD-AV 126 Query: 131 IRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 ++ + DP V + +PRRE +L+ L+ N G+ +++ Q+ +IYG +DE V Sbjct: 127 LQYRNITLDPAAHSVYVDDVIVNVPRREFSLLQKLLENSGQVLSREQLMQSIYG-WDEDV 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + N +E HI LRKKL + + R +GY ++ N Sbjct: 186 DSNALEVHIHNLRKKLNANF----IRTIRGVGYMVEKN 219 >gi|225374986|ref|ZP_03752207.1| hypothetical protein ROSEINA2194_00609 [Roseburia inulinivorans DSM 16841] gi|225213176|gb|EEG95530.1| hypothetical protein ROSEINA2194_00609 [Roseburia inulinivorans DSM 16841] Length = 237 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123 IR S+VP++ +S + + G DD + KP + + A++ A+ RR K+++ Sbjct: 80 IRKTSKVPIVFLSSADDNMNIVMAMNMGGDDFIAKPFDLQVLTAKLQAVLRRSYGSKLTS 139 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E G + + + V GE L + E IL+ LM +GK V++ +I ++G DE Sbjct: 140 HSIECGEVVLNLNDTSVAVCGEKIDLTKNEFLILKTLMEKQGKVVSREEIMERLWG-NDE 198 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V++N + +I+++RKKL D + +KR LGY + Sbjct: 199 FVDDNTLTVNITRIRKKLEAAGVDDFITTKRGLGYLV 235 >gi|182627315|ref|ZP_02954997.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|177907260|gb|EDT70003.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 229 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 8/142 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR P+I IS +++ ++ G DD ++KP E+LARV A+ RR K++N+ Sbjct: 70 IRKIKNTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKITNSSE 129 Query: 127 ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 I+ + R+ +V GE L +E +ILE L+ N K K +F ++ Sbjct: 130 GVETIKYKNLILEPRSREVKVNGEEIQLTSKEFKILELLVCNPKKVFTKANLFETVWK-- 187 Query: 182 DEAV-EENVVESHISKLRKKLR 202 +E + ++N + HIS LR K+ Sbjct: 188 EEFLGDDNTINVHISNLRNKIN 209 >gi|332184581|gb|AEE26835.1| DNA-binding response regulator [Francisella cf. novicida 3523] Length = 228 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 7/147 (4%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R +VP+I ++ L+ + D G DD + KP +E++AR+ AI RR+ Sbjct: 60 LEVLRNVRNRGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRI 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ IR +P + G + P+ ++E +L L+ N G+ V KTQ+ Sbjct: 120 DTRSGKSVNEEIRFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLL 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 +Y D+ ++ N +E H+ LRKK+ Sbjct: 180 EEVYS-TDKEMDTNTLEVHMHNLRKKI 205 >gi|320323415|gb|EFW79503.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. glycinea str. B076] gi|320327611|gb|EFW83623.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. glycinea str. race 4] Length = 225 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 108/219 (49%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + + D++ I+ L G G L Sbjct: 3 LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIGG--L 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R + P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR Sbjct: 61 DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTIMAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL + + F P+++ R +GY Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGY 218 >gi|229000557|ref|ZP_04160100.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17] gi|229003857|ref|ZP_04161665.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4] gi|228757365|gb|EEM06602.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4] gi|228759200|gb|EEM08203.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17] Length = 228 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 7/163 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 E+ ++IR+ S +P+I ++ Q + FD G+DD + KP ++ RV A+ RR Sbjct: 70 FEVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSY 129 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + N I V D + PL +E IL+ L+ N+ K + + I ++ Sbjct: 130 DQSTENHLFFKEIHVDCDAYKVYINELEIPLTAKEFEILQLLLQNKKKVITRESIVEKVW 189 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ E ++++HI +RK KL + + + +GY ID Sbjct: 190 G-YEYHGETRMIDTHIKNIRK----KLDISYIKTVKGIGYKID 227 >gi|237678811|emb|CAQ57538.1| two-component response regulator [Bradyrhizobium elkanii] gi|298113008|gb|ADI58611.1| TtsI [Bradyrhizobium elkanii] Length = 229 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 12/165 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ R +P I +S L + F++G DD + KP+ E++AR+ AI RR Sbjct: 63 LKQLRREGRSMPAIMMSSLNDLGRRIAIFNAGADDFLPKPVSTEELIARMRAILRR---- 118 Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + T P+ F + R V G + + RRE ILE+L+ G+ V + + + Sbjct: 119 -STQMTAPLVTFGNLHFDPIARQVAVGGRILKIARREVCILEHLLNRAGRTVPRASLEDS 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +Y FD+ V N +E I +LR L + + R +GY+++ Sbjct: 178 LYA-FDDEVSTNALEVGIYRLRTHLSQSGATLRIKTARGVGYTLE 221 >gi|227823287|ref|YP_002827259.1| two component response regulator [Sinorhizobium fredii NGR234] gi|227342288|gb|ACP26506.1| two component response regulator [Sinorhizobium fredii NGR234] Length = 233 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G+ L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSIIATGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG 206 DE E +++ I KLRKKL N G Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLANAAG 206 >gi|146283048|ref|YP_001173201.1| two-component response regulator [Pseudomonas stutzeri A1501] gi|145571253|gb|ABP80359.1| probable two-component response regulator [Pseudomonas stutzeri A1501] Length = 225 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 112/223 (50%), Gaps = 10/223 (4%) Query: 1 MFVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59 M VL+ +D AL+ G +A G+ ++ + E L +A DV ++ L E Sbjct: 1 MHVLLAEDDALIASGIVAGLNAQGLIVDHAATAAAAEALLRAAHFDVLILDLGL--PDED 58 Query: 60 VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L L R +R ++P++ ++ ++ + +G DD + KP RE+ AR+ + RR Sbjct: 59 GLALLRRLRQQGLELPVLVLTARDAVSDRVTGLQAGADDYLLKPFDLRELAARLHTLMRR 118 Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + S N E G + + + G + L RRE+ +L+ L+ N+G+ ++ Q+ A+ Sbjct: 119 MSGRSVNLIEHGRLSYDPSRCEARLDGRLVDLSRREQALLQALLNNQGRVLSSEQLKDAV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 YG D+ VE N + HI LR+ KLG V++ R LGY + Sbjct: 179 YGFADD-VESNALNVHIHHLRR----KLGSGIVETVRGLGYRL 216 >gi|301167935|emb|CBW27520.1| two-component system response regulator [Bacteriovorax marinus SJ] Length = 225 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 3/125 (2%) Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSD 136 +S ++T ++ + G DD + KP+ RE+LARV RL K + + + G R+ D Sbjct: 82 LSSITKVETKVEGLELGADDYIIKPVLSRELLARVKNRINRLEKEAPSVYQYGSTRLSVD 141 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 + E+ GEV + E +IL L N GK V+K + +++G+ D ++ + ++SH+S Sbjct: 142 SQRLEIHGEVVDITPTEYKILHCLWKNVGKMVSKNDLSQSVWGVSD--IDAHTIDSHVSN 199 Query: 197 LRKKL 201 LRKKL Sbjct: 200 LRKKL 204 >gi|207091870|ref|ZP_03239657.1| putative transcriptional regulator [Helicobacter pylori HPKX_438_AG0C1] Length = 212 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 28/211 (13%) Query: 21 DDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPL 75 + G++++GF SLE E+L D+ + ++ + + RI HS + + Sbjct: 6 EKGLNVKGFMADVTESLEDGEYLM-----DIRNYDLVMVSDKNALSFVSRIKEKHSSIVV 60 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVF 134 + SD P+ + + F+ G DD + KP +R I A VA I RL+ +N E G + + Sbjct: 61 LVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARIEARLRFWGSNVIEIGDLTIS 118 Query: 135 SD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 D GR+ EV+G+ F +L +L +R + V+K Q+ AI+ E V Sbjct: 119 PDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQIVSKEQLLDAIWEE-PEMVTP 170 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 NV+E I+++R+K+ LG V++ R GY Sbjct: 171 NVIEVAINQIRQKMDKPLGISTVETVRRRGY 201 >gi|332185405|ref|ZP_08387153.1| response regulator [Sphingomonas sp. S17] gi|332014383|gb|EGI56440.1| response regulator [Sphingomonas sp. S17] Length = 226 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 84/162 (51%), Gaps = 10/162 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R + P++ ++ S + D+G DD V KP E++AR+ A+ RR Sbjct: 63 LDRWRKEGKTTPVLVLTARDSWSDKVAGLDAGADDYVAKPFQTEELIARLRALIRRAS-G 121 Query: 123 NNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N +E V D R +V GE L +E ++L YL+ ++GK V++T++ IY Sbjct: 122 NASSELTAGDVRLDTRSGKVTRAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQ 181 Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + N +E ++++RK KLG D + + R LGYS+D Sbjct: 182 DFDR--DSNTIEVFVTRIRK----KLGQDVITTIRGLGYSLD 217 >gi|154503112|ref|ZP_02040172.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149] gi|153796106|gb|EDN78526.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149] Length = 231 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 78/145 (53%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR HS+VP+I ++ + L FD GVD+ ++KP + ++ARV AI RR + Sbjct: 71 QVCREIRMHSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRRTQG 130 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S N E + D V + P L +E +L Y + N+G +++ +I + ++ Sbjct: 131 SGNTDEISAGGIVVDKAAHTVMSDGSPVDLSFKEFELLTYFIENQGIALSREKILNNVWN 190 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR KL +K Sbjct: 191 -YDYFGDARTIDTHVKKLRSKLGDK 214 >gi|58579495|ref|YP_197707.1| hypothetical protein ERWE_CDS_08310 [Ehrlichia ruminantium str. Welgevonden] gi|58617548|ref|YP_196747.1| hypothetical protein ERGA_CDS_08210 [Ehrlichia ruminantium str. Gardel] gi|58417160|emb|CAI28273.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel] gi|58418121|emb|CAI27325.1| Unknown [Ehrlichia ruminantium str. Welgevonden] Length = 283 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130 +VP++ +S S+ + G DD V KP H E+LAR+ AI RR + + G Sbjct: 91 KVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAIVRRTRGHPESIVRVGN 150 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I + D + E GE+ L ++E ++E L + G + K S +Y DE ++ ++ Sbjct: 151 IAINLDHKCVECNGEIVHLTKKEYGMIELLSSRLGTVLTKEMFLSHLYRELDEPSDDKII 210 Query: 191 ESHISKLRKKLR 202 + + KLRKKL+ Sbjct: 211 DVFMCKLRKKLK 222 >gi|229020274|ref|ZP_04177043.1| Two-component response regulator vanRB [Bacillus cereus AH1273] gi|229026498|ref|ZP_04182853.1| Two-component response regulator vanRB [Bacillus cereus AH1272] gi|228734806|gb|EEL85446.1| Two-component response regulator vanRB [Bacillus cereus AH1272] gi|228741027|gb|EEL91256.1| Two-component response regulator vanRB [Bacillus cereus AH1273] Length = 216 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 83/163 (50%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +I+R S VP+I ++ + ++ + F+ GVDD + KP H+ + RV A+ RR Sbjct: 58 ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGVDDYITKPFHYTVFIKRVEAVLRRTTTK 117 Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + S V G L +E I+ L+ NRGK ++++ + + ++ Sbjct: 118 ETETATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ + V+++HI LRK KLG + + + +GY I+ Sbjct: 178 G-YEHYGDVRVIDTHIKNLRK----KLGIPYIKTVKGIGYKIE 215 >gi|295399496|ref|ZP_06809478.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312109946|ref|YP_003988262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978962|gb|EFG54558.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215047|gb|ADP73651.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 235 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 10/136 (7%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET------GPIRVFSDGRDPEVQGEVF 147 G DD + KP RE++ARV AI RR + SN E G +++F D + GE Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRTQFSNGETEAIDKIVIGDLKIFPDQYEAYFGGERL 155 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L +E +L YL ++G+ + + Q+ SA++ +D A + +V+ HIS LR+K+ Sbjct: 156 ELTPKEFELLLYLAKHKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLREKIEQDTK- 213 Query: 208 DP--VDSKRFLGYSID 221 P + + R LGY ++ Sbjct: 214 KPLYIKTIRGLGYKLE 229 >gi|320157931|ref|YP_004190309.1| DNA-binding response regulator [Vibrio vulnificus MO6-24/O] gi|319933243|gb|ADV88106.1| DNA-binding response regulator [Vibrio vulnificus MO6-24/O] Length = 218 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 11/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60 +LI+D L+ + G +++ LE + S+ + ED +A+ L Sbjct: 3 LLLIEDDTLLGQSMVTSLSRHGYTVDW---LEKGSGVTSALKTEDFTAVILDLTLPDIDG 59 Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R IR+ +P++ ++ ++ + D G DD + KP E+LAR+ + RR Sbjct: 60 LDVLRNIRSAGFNLPVVILTARDDIKDRVQGLDRGADDYLGKPFALEELLARLRVVIRRQ 119 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S E G + + + Q V L R E +IL LM N G+ ++K Q+ +++ Sbjct: 120 SGSATEVIEVGELSLSLSEQSIRYQEAVLKLTRNEFKILAALMTNAGRVMSKDQLQQSLH 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +D++ +N +E HI LRKK N P+ + R +GY I+ Sbjct: 180 G-WDDSASDNAIEVHIHNLRKKAPNV----PIKNIRGVGYIIE 217 >gi|300933784|ref|ZP_07149040.1| two-component system response regulator TcsR8 [Corynebacterium resistens DSM 45100] Length = 230 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 9/172 (5%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L + A +D+ + L+ G E+ R +R S VP+I ++ S + + G DD Sbjct: 38 LDTFAAQDIDIVLLDLMLPGMSGTEVCRQLRQTSSVPVIMVTARDSEIDKVVGLELGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR---DPE-----VQGEVFPL 149 V KP RE++AR+ A+ RR + + E ++ + R D E V GE P+ Sbjct: 98 YVTKPYSARELIARIRAVLRRGGETEHVEEADEGQILREDRVMMDVERHIVTVDGEPVPM 157 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 P +E +LEYLM N G+ + + Q+ ++G+ D + ++ HI +LR K+ Sbjct: 158 PLKEFDLLEYLMRNSGRVLTRGQLIDRVWGV-DYVGDTKTLDVHIKRLRSKI 208 >gi|194366239|ref|YP_002028849.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194349043|gb|ACF52166.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 224 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 75/154 (48%), Gaps = 16/154 (10%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 VP+I +S L + D G DD + KP E+ AR+ + + R + Sbjct: 73 VPIIVLSALGQLPDRIAGLDEGADDYLAKPFALEELFARI-------RAAGRRPSGMQVE 125 Query: 133 VFSDGR---DP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + S GR DP V G+ LPRRE R+L L G+ V + I A+YG FD+ Sbjct: 126 LVSIGRLVFDPASGEASVGGQRLELPRREIRVLTALARRLGRTVLRESIEMAVYG-FDDG 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + N ++SH+S+LR+KL + + + R +GY Sbjct: 185 IHSNTLDSHVSRLRRKLADADARVEIHAIRGVGY 218 >gi|69244158|ref|ZP_00602694.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257880948|ref|ZP_05660601.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257884605|ref|ZP_05664258.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257892530|ref|ZP_05672183.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|258616213|ref|ZP_05713983.1| putative response regulator CiaR [Enterococcus faecium DO] gi|293560618|ref|ZP_06677106.1| transcriptional regulatory protein CiaR [Enterococcus faecium E1162] gi|293569893|ref|ZP_06680980.1| transcriptional regulatory protein CiaR [Enterococcus faecium E1071] gi|294614504|ref|ZP_06694417.1| transcriptional regulatory protein CiaR [Enterococcus faecium E1636] gi|294617772|ref|ZP_06697386.1| transcriptional regulatory protein CiaR [Enterococcus faecium E1679] gi|294621682|ref|ZP_06700846.1| transcriptional regulatory protein CiaR [Enterococcus faecium U0317] gi|314939067|ref|ZP_07846330.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314943555|ref|ZP_07850318.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314948812|ref|ZP_07852183.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|314952199|ref|ZP_07855216.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314993264|ref|ZP_07858639.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314994826|ref|ZP_07859957.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|68196615|gb|EAN11041.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257816606|gb|EEV43934.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257820443|gb|EEV47591.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257828909|gb|EEV55516.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|291587641|gb|EFF19518.1| transcriptional regulatory protein CiaR [Enterococcus faecium E1071] gi|291592622|gb|EFF24218.1| transcriptional regulatory protein CiaR [Enterococcus faecium E1636] gi|291595946|gb|EFF27225.1| transcriptional regulatory protein CiaR [Enterococcus faecium E1679] gi|291598691|gb|EFF29744.1| transcriptional regulatory protein CiaR [Enterococcus faecium U0317] gi|291605441|gb|EFF34887.1| transcriptional regulatory protein CiaR [Enterococcus faecium E1162] gi|313590937|gb|EFR69782.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313592245|gb|EFR71090.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313595664|gb|EFR74509.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313597753|gb|EFR76598.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313641619|gb|EFS06199.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|313644755|gb|EFS09335.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 224 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 5/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I + Q P++ ++ SL+ ++ F+ G DD + KP + E++ RV A+ +R Sbjct: 63 LAKIRKEKIQTPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSLGL 122 Query: 123 NNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + D + EV + +V P+ +E +L Y + N+G + K QIF I+G Sbjct: 123 FDENVLKYKDISCDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 FD V+E ++S LRK LR+ G D + + R +GY Sbjct: 182 FDSDTTITVIEVYMSNLRKHLRST-GLDKEIKTLRNVGY 219 >gi|255523314|ref|ZP_05390284.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188247|ref|ZP_06856639.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255512968|gb|EET89238.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047373|gb|EFG86815.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 232 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 21/221 (9%) Query: 10 LVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 LVK+G+ + LF D LE FN+ E + + ++ L +IR Sbjct: 23 LVKEGFEVELFNDGLSVLEAFNTKEPDMLILDIMMPEMDG------------FSLCSLIR 70 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VS 122 S +P+I +S + + G DD + KP E++AR+ +I+RR++ + Sbjct: 71 QKSCIPIIIVSAKDTEPDKIAGLTLGCDDYLTKPFSPMELIARIKSIFRRIELDKKQHIE 130 Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N+ T G I V D ++ G L E + YL+ N+ + V+++++ ++G F Sbjct: 131 DNKVITIGDISVNLDIKEIHYHGNNIGLTGMEFSFIYYLITNKNRAVSRSELLDKVWG-F 189 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + VE + + ++RKKL N +D+ G+ I + Sbjct: 190 ENDVETRATDDMVKRIRKKLLNAGSSLKIDTVWGFGFKIQF 230 >gi|168202297|ref|ZP_02629867.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169298694|gb|EDS80773.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 229 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 8/141 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR P+I IS +++ ++ G DD ++KP E+LARV A+ RR K++N+ Sbjct: 70 IRKIKNTPIIVISAKTAMEDKINVLKLGADDFISKPFDVNEVLARVEALLRRSKITNSSE 129 Query: 127 ETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 I+ + R+ +V+GE L +E +ILE L+ N K K +F ++ Sbjct: 130 GVEKIKYKNLILEPRSREVKVKGEEIQLTSKEFKILELLVCNPKKVFTKANLFETVWE-- 187 Query: 182 DEAV-EENVVESHISKLRKKL 201 +E + ++N + HIS LR K+ Sbjct: 188 EEFLGDDNTINVHISNLRNKI 208 >gi|291519845|emb|CBK75066.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 224 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 82/157 (52%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123 IR SQVP++ +S + + G DD ++KP + + A++ AI RR +S Sbjct: 67 IRKISQVPVVFLSSADDNMNIVMAMNMGADDFISKPFDLQVLTAKLQAILRRSYGESISV 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 ++ + G I + D + G+ L + E IL+ LM GK V++ I ++G DE Sbjct: 127 HKLQVGNISLNLDDTTATIDGDKLDLTKNEYLILKALMERPGKVVSRESIMERLWGA-DE 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V++N + +++++RKK+ D + +KR LGY + Sbjct: 186 FVDDNTLTVNVTRIRKKIEAAGVPDFITTKRGLGYIV 222 >gi|229170768|ref|ZP_04298394.1| Two-component response regulator vanRB [Bacillus cereus AH621] gi|228612717|gb|EEK69916.1| Two-component response regulator vanRB [Bacillus cereus AH621] Length = 214 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 21/170 (12%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ ++IR+ S +P+I ++ Q + FD G+DD + KP ++ RV A+ RR Sbjct: 56 FEVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRR-- 113 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKT 171 SNN++ T VF R+ V G+ + PL +E IL+ L+ N K + + Sbjct: 114 -SNNQS-TDNHFVF---RELHVDGDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRE 168 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I I+G ++ A + ++++H+ +RK KL + + + +GY ID Sbjct: 169 NIVEKIWG-YEYAGDTRMIDTHMKNIRK----KLDIPYIKTVKGIGYKID 213 >gi|333029328|ref|ZP_08457389.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] gi|332739925|gb|EGJ70407.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] Length = 222 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 23/217 (10%) Query: 8 RALVKDGY---IALFGDDGVS--LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + L ++GY IA G+DG+S LE L +W+ + ++ Sbjct: 18 QGLEEEGYNVTIAHNGEDGLSMVLEKCPDLVLLDWMLPQMQG----------------ID 61 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R+IR Q P++ ++ ++ T++ +G +D + KP E+LAR+ +R +V Sbjct: 62 VCRLIRQADQSTPILFLTAKDTINETIEGLQAGANDYIKKPFSFAELLARIEVHFREKEV 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ + G I + GE PL +RE +LE+L+AN+G+ ++ I I+ + Sbjct: 122 LKNQLKLGNILLNKSTYQVIKSGEEIPLTQREFELLEFLIANKGEVCSRQLIIEKIWNI- 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D + V++ I+ +RKKL + + R +GY Sbjct: 181 DFDYDTGVIDVFINAIRKKLSMDKDEGYIKTIRGVGY 217 >gi|288960015|ref|YP_003450355.1| DNA-binding two-component response regulator [Azospirillum sp. B510] gi|288912323|dbj|BAI73811.1| DNA-binding two-component response regulator [Azospirillum sp. B510] Length = 219 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 79/157 (50%), Gaps = 10/157 (6%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 RA VP++ ++ + + D+G DD + KP E+LARV A+ RR K + AE Sbjct: 68 RAGISVPVLILTARGAWTEKVQGIDAGADDYLAKPFSMEELLARVRALIRRAK-GHASAE 126 Query: 128 TGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 V D R V GE L E R+L YLM +G+ V++T++ +Y FD Sbjct: 127 ITCGGVVLDTRTGRVTVDGEPIELTAFEYRVLSYLMHRKGQVVSRTELTEHVYAQDFDR- 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + N +E + +LR+ KLG D + + R LGY D Sbjct: 186 -DSNTIEVFVGRLRR----KLGVDVIKTVRGLGYRAD 217 >gi|149187001|ref|ZP_01865309.1| two-component response regulator [Erythrobacter sp. SD-21] gi|148829390|gb|EDL47833.1| two-component response regulator [Erythrobacter sp. SD-21] Length = 226 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 8/150 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIR 132 P++ ++ S + D+G DD + KP E++AR+ A+ RR + + T G +R Sbjct: 74 PVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRASGNTSSELTAGEVR 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVE 191 + + ++GE L +E ++L YLM ++GK V++T++ IY FD + N +E Sbjct: 134 LDTRSGRVTLKGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYDQDFDR--DSNTIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++++RK KLG + + + R LGYS+D Sbjct: 192 VFVTRIRK----KLGAEVITTIRGLGYSLD 217 >gi|293603882|ref|ZP_06686297.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] gi|292817719|gb|EFF76785.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] Length = 234 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 81/151 (53%), Gaps = 8/151 (5%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129 S+ P++ ++ ++ + D+G DD + KP RE+ AR A+ RR + + G Sbjct: 71 SKTPVLALTARIDIEDRVHALDTGADDYLAKPFDFRELEARCRALLRRPIAQATGVQRFG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + S R + G+ LP+RE +LE L+A + V+KT+I + ++ FD+ N Sbjct: 131 DLVIDSAARHVSLAGQRIDLPKREYSLLEILLAGMNRAVSKTEIANKLFA-FDDEAAPNA 189 Query: 190 VESHISKLRKKLRNKLGFDP--VDSKRFLGY 218 +E +I++LR+KL P ++++R GY Sbjct: 190 IEVYIARLRRKLEGS----PLRIETQRGTGY 216 >gi|261839252|gb|ACX99017.1| putative transcriptional regulator [Helicobacter pylori 52] Length = 223 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 32/231 (13%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55 M VL+ ++ V G I + G++++GF SLE E+L D+ + ++ Sbjct: 1 MRVLLIEKNSVLGGEI----EKGLNVKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 + + RI HS + ++ SD P+ + + F+ G DD + KP +R I A VA I Sbjct: 52 DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARI 109 Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RL+ +N E G + + D GR+ EV+G+ F +L +L +R + Sbjct: 110 EARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPF-------EVLIHLARHRDQI 162 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+K Q+ AI+ E V NV+E I+++R+K+ LG V++ R GY Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 212 >gi|116253499|ref|YP_769337.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|209550655|ref|YP_002282572.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|241206026|ref|YP_002977122.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115258147|emb|CAK09248.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|209536411|gb|ACI56346.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|240859916|gb|ACS57583.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 233 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G+ L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG 206 DE E +++ I KLRKKL N G Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLANAAG 206 >gi|83644677|ref|YP_433112.1| response regulator [Hahella chejuensis KCTC 2396] gi|83632720|gb|ABC28687.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 223 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 108/223 (48%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D +++ + GD G ++ E WL S D+ ++ L G ++ Sbjct: 3 LLVIEDAEILRQSLVIGLGDAGYVVDAAADGEEGLWLASEQGYDLIILDIMLPHMNGFEL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRL 119 L+ R + A S V ++ D ++ + SG DD + KP E+LAR+ A+ RR Sbjct: 63 LDRLRTLGADSLVLMLTARD--EVEDRVLGLRSGADDYLVKPFDFDELLARIEALLRRRA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++N E G + + + V G LP RE +LE L NR + V++ +I IY Sbjct: 121 GCASNLLEIGELTINLHSKQVSVSGVPVSLPPREYALLECLALNRHRVVSRQEIEHKIY- 179 Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D+ +E NVV+S IS LRK + +K + ++R GY I Sbjct: 180 --DDKIEPMSNVVDSAISSLRKMIDHKDRPSFILTRRGHGYQI 220 >gi|291561456|emb|CBL40255.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 226 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 5/162 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR +SQVP+I ++ + L F+ GVD+ + KP + ++AR+ AI RR Sbjct: 65 ETCKTIRRYSQVPIIMLTARSEERDELLGFELGVDEYITKPFSPKILVARIEAILRRGSG 124 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ E IRV D + V G L +E +L Y M N+G +++ +I + ++ Sbjct: 125 TSTGEILEADGIRVDKDAHEVTVDGRPVDLSNKEFELLTYFMENKGIALSREKILNNVWN 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + +++H+ KLR KL K D + + +GY ++ Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGPK--GDNIKTVWGMGYKLE 223 >gi|291166732|gb|EFE28778.1| DNA-binding response regulator [Filifactor alocis ATCC 35896] Length = 228 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 106/208 (50%), Gaps = 10/208 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD ++D + +G + F N+ + E+LQ++ +V + ++ +G Sbjct: 4 ILIVDDEKRIRDLIVMYLKKEGYEVTDFDNADKAYEFLQNN---EVDLLVLDIMMRGMNG 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 L+L + +R S+VP+I +S + + G DD + KP RE++ R+ I RR Sbjct: 61 LDLCKKVRMTSEVPIIFVSARSEELDRILGLELGADDYLAKPFSVRELVVRIKNILRRTN 120 Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K +N +++F + R +V E L +E +L+YL+ N+G +++ +I Sbjct: 121 AVVQKKEDNVLSVEDLKIFIEQRIVKVGEEEVALTTKEYEVLKYLVENKGYPLSRDKIIQ 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203 I+G + + N V+ I +LRKKL++ Sbjct: 181 NIWGYEYDGYDRN-VDDTIKRLRKKLKD 207 >gi|222086833|ref|YP_002545367.1| two-component response regulator protein controls chromosomal replication initiation [Agrobacterium radiobacter K84] gi|221724281|gb|ACM27437.1| two-component response regulator protein controls chromosomal replication initiation [Agrobacterium radiobacter K84] Length = 233 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G+ L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG 206 DE E +++ I KLRKKL N G Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLANAAG 206 >gi|154486694|ref|ZP_02028101.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis L2-32] gi|154084557|gb|EDN83602.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis L2-32] Length = 234 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S+VP+I ++ + + + G DD + KP RE+LAR+ A+ RR ++ Sbjct: 63 LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLRRNQMV 122 Query: 123 NNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 E G I + + V+GE P +E +LEYLM N+G+ + + Q+ Sbjct: 123 AESGEAADDDIPLVCGDISMRIGQHEVTVRGENVFFPLKEFELLEYLMQNKGRVMTRHQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 I+G D + ++ H+ ++R K+ G + + R LGY ID Sbjct: 183 IDRIWG-SDYVGDTKTLDVHVKRVRAKIEEDPGHPKYLTTVRGLGYKID 230 >gi|85373556|ref|YP_457618.1| two-component response regulator [Erythrobacter litoralis HTCC2594] gi|84786639|gb|ABC62821.1| two-component response regulator [Erythrobacter litoralis HTCC2594] Length = 225 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 8/150 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIR 132 P++ ++ S + D+G DD + KP E++AR+ A+ RR + + T G +R Sbjct: 74 PVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRASGNTSSELTAGDVR 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVE 191 + + ++GE L +E ++L YLM ++GK V++T++ IY FD + N +E Sbjct: 134 LDTRSGRVSLKGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYDQDFDR--DSNTIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++++RK KLG + + + R LGYS+D Sbjct: 192 VFVTRIRK----KLGAEVITTIRGLGYSLD 217 >gi|83309728|ref|YP_419992.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82944569|dbj|BAE49433.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 238 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 2/145 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L R+ A P++ +S + SG DD + KP E++AR+ AI RR K Sbjct: 63 LRRLRSARIDTPVLILSGLSEPDKKIKGLGSGADDYLTKPFDKGELVARIQAIVRRSKGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + +TG + V D R V G+ L +E ILE L +G+ + K Q + +YG Sbjct: 123 AQSVIDTGKLSVNLDARTVAVTGDPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYGGI 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG 206 DE E +++ I KLRKKL G Sbjct: 183 DEP-ELKIIDVFICKLRKKLATATG 206 >gi|229104138|ref|ZP_04234811.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28] gi|228679273|gb|EEL33477.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28] Length = 214 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 21/170 (12%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ ++IR+ S +P+I ++ Q + FD G+DD + KP ++ RV A+ RR Sbjct: 56 FEVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRR-- 113 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKT 171 SNN++ T VF R+ V G+ + PL +E IL+ L+ N K + + Sbjct: 114 -SNNQS-TDNHFVF---RELHVDGDAYKVYVNRVDVPLTTKEFEILQLLLQNEKKVLTRE 168 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I I+G ++ A + ++++H+ +RK KL + + + +GY ID Sbjct: 169 NIVEKIWG-YEYAGDTRMIDTHMKNIRK----KLDIPYIKTVKGIGYKID 213 >gi|86358932|ref|YP_470824.1| two-component response regulator protein controls chromosomal replication initiation [Rhizobium etli CFN 42] gi|190893160|ref|YP_001979702.1| two-component response regulator protein controls chromosomal replication initiation [Rhizobium etli CIAT 652] gi|218682349|ref|ZP_03529950.1| two-component response regulator protein controls chromosomal replication initiation [Rhizobium etli CIAT 894] gi|86283034|gb|ABC92097.1| two-component response regulator protein controls chromosomal replication initiation [Rhizobium etli CFN 42] gi|190698439|gb|ACE92524.1| two-component response regulator protein controls chromosomal replication initiation [Rhizobium etli CIAT 652] Length = 233 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 3/147 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G+ L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG 206 DE E +++ I KLRKKL N G Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLANAAG 206 >gi|328956092|ref|YP_004373425.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] gi|328456416|gb|AEB07610.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] Length = 221 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 90/167 (53%), Gaps = 3/167 (1%) Query: 57 GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ +E+ R +R ++ + ++ +S S+ ++ DSG +D + KP E+ AR+ A+ Sbjct: 56 GKDGIEILRELRESARDIKVLILSARSSVADRVNGLDSGANDYLIKPFAFEELEARIRAL 115 Query: 116 -YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +R + + G +R+ + GR V L R+E +LE+L+ +RG+ V++ + Sbjct: 116 THRSFTQAASVLRCGDLRLDTIGRTLRVGSREIALTRKELAVLEHLLLHRGEVVSQEDLL 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+ D NVV H++ LRKKLR ++G D V ++ GY ID Sbjct: 176 DHIWD-RDANTFSNVVRVHVASLRKKLRAEVGDDVVKTRIGEGYYID 221 >gi|153005959|ref|YP_001380284.1| two component transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152029532|gb|ABS27300.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. Fw109-5] Length = 233 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 98/204 (48%), Gaps = 7/204 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++DD A V+ A G G L +L E L +S DV ++ + G+ V Sbjct: 7 LVLVVDDEAQVRRFLRAALGSRGFRLVEAETLREAEQLATSHNPDVYLLD-LTLPDGDGV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R ++ P+I +S + ++ D+G DD + KP E+LAR+ R + Sbjct: 66 -DLARRLREWTRAPIIVLSARGREEDKVNALDAGADDYLTKPFGVNELLARLRVALRHAQ 124 Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S + E GP+R+ R+ V+G L E R+L L + G + QI + Sbjct: 125 ASPAQPAVLEAGPLRIDLARREVTVEGREVRLTPTEYRLLALLARHAGMVLTHRQILREV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G A E + V H+++LRKK+ Sbjct: 185 WG--PNATEAHYVRVHMAELRKKI 206 >gi|83717906|ref|YP_439918.1| DNA-binding response regulator TctD [Burkholderia thailandensis E264] gi|83651731|gb|ABC35795.1| DNA-binding response regulator TctD [Burkholderia thailandensis E264] Length = 267 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 104 LEVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRS 163 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L + R E GP+ S R + + L RER +LE L+ G+ + K + I+ Sbjct: 164 LGHDHVRVECGPLEFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIF 223 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LRKKL G V + R LGY ++ Sbjct: 224 GL-DESVNADAIEIYVHRLRKKLEGS-GVAIV-TLRGLGYLLE 263 >gi|85706269|ref|ZP_01037363.1| two component response regulator [Roseovarius sp. 217] gi|85669042|gb|EAQ23909.1| two component response regulator [Roseovarius sp. 217] Length = 219 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 83/158 (52%), Gaps = 7/158 (4%) Query: 65 RIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 + +RA +V P+I ++ + ++ ++G DD + KP E+ AR+ ++ RR + Sbjct: 64 KALRARGEVTPVIILTALDQVSDRIEGLNAGADDYLVKPFDLAELSARIGSVARRYSGNP 123 Query: 124 NRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N T GP+ + R G+ L RE + E +A G+ ++K Q+ +Y +D Sbjct: 124 NPIVTHGPLDIDLAARSVHRGGKPVQLTAREWALFEAFLARPGQLLSKAQLEDKLYA-YD 182 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 VE N +E H+S+LRK KLG V+++R LGY + Sbjct: 183 AEVESNTIEVHVSRLRK----KLGAGIVETERGLGYRL 216 >gi|172041120|ref|YP_001800834.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171852424|emb|CAQ05400.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 227 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/207 (29%), Positives = 102/207 (49%), Gaps = 18/207 (8%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIGISD 80 LE E + S A + + A+E F + + +L E+ R IRA S VP+I ++ Sbjct: 21 LEREGYDVSIAEDGLKAVEMFELHGADIILLDLMLPGLPGTEVCRAIRAKSMVPIIMLTA 80 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-----SNNRAETGPIRVFS 135 + + + G DD V KP RE+LAR+ A+ RR + S+N E G +RV Sbjct: 81 KDTEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRGQAQGSEGSSNVLEAGGVRVDV 140 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 D V+GE LP +E +LE L+ N G+ + + Q+ ++G D + ++ H+ Sbjct: 141 DRYVVTVRGEDMQLPLKEFELLEMLVRNAGRVMTREQLIDRVWG-SDYVGDTKTLDVHVK 199 Query: 196 KLRKKL-RNKLGFDPVDSKRFLGYSID 221 +LR K+ N + + + R LGY + Sbjct: 200 RLRTKIEENPSKPELLVTLRGLGYKFN 226 >gi|119025295|ref|YP_909140.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118764879|dbj|BAF39058.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 235 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 11/169 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S+VP+I ++ + + + G DD + KP RE+LAR+ A+ RR ++ Sbjct: 64 LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLRRNQMV 123 Query: 123 NNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 E G I + + V+GE P +E +LEYLM N+G+ + + Q+ Sbjct: 124 AESGEAADDDIPLVCGDISMRIGQHEVTVRGENVFFPLKEFELLEYLMQNKGRVMTRHQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 I+G D + ++ H+ ++R K+ G + + R LGY ID Sbjct: 184 IDRIWG-SDYVGDTKTLDVHVKRVRAKIEEDPGHPKYLTTVRGLGYKID 231 >gi|240142372|ref|YP_002966882.1| two component transcriptional regulator, winged helix family [Methylobacterium extorquens AM1] gi|240012316|gb|ACS43541.1| two component transcriptional regulator, winged helix family [Methylobacterium extorquens AM1] Length = 231 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 2/139 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A P++ +S ++ + +G DD V KP H E++AR+ AI RR K T Sbjct: 69 AKVGTPVLILSGMGGIEDKVKGLGNGADDYVVKPFHKDELIARINAIVRRSKGHAQSVVT 128 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + V D + EV G L +E ++LE L+ +G + K + +YG DE E Sbjct: 129 VGDLTVNLDAKTVEVSGHKVYLTGKEYQMLELLVLRQGTTLTKEMFLNHLYGGMDEP-EL 187 Query: 188 NVVESHISKLRKKLRNKLG 206 +++ I KLRKKL N G Sbjct: 188 KIIDVFICKLRKKLANASG 206 >gi|258510063|ref|YP_003183497.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476789|gb|ACV57108.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 224 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 2/163 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R VP++ ++ + G DD + KP E++ARV A+ RR ++ Sbjct: 62 ELTRWLREERDVPILLLTALGETSHKVRGLRLGADDYLVKPFAPEELVARVEALLRRYRI 121 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + A + +R+ SD + E GE LP +E ++L L A+ G+ +++ ++ ++G Sbjct: 122 RADGALDLAVLRLLSDTYEVEANGERMALPPKEFQLLFTLAASAGRTLSRDKLIEEVWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D A +E V+ HI +LR K + + + R LGY ++ N Sbjct: 181 YDYAGDERTVDVHIKRLRVKFPEDVYPFRIRTVRGLGYRLEVN 223 >gi|289548094|ref|YP_003473082.1| transcriptional regulator [Thermocrinis albus DSM 14484] gi|289181711|gb|ADC88955.1| two component transcriptional regulator, winged helix family [Thermocrinis albus DSM 14484] Length = 226 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 104/217 (47%), Gaps = 21/217 (9%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQ---SSAREDVS-----AIEAFLIGKGEKVLELP 64 D Y+ +G+ EGF EW+Q ++ R V I ++ K + +++ Sbjct: 10 DLYLGQMMVEGLRHEGFTV----EWVQDGFTALRRVVEENYDLVILDIMLPKFDG-MKVC 64 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR +P+I ++ ++ ++ +G DD + KP +E+ AR+ A+ RR + Sbjct: 65 RKIRETKDIPVIMVTARSQIEDKVEGLSAGADDYITKPFSFKELSARIQAVLRRYRKKEG 124 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 G +R+ + +G+ L RRE +L+ L N + V++ +I++ ++G E Sbjct: 125 VIMVGDLRIDPSAVEVTYRGQKIHLTRREFELLKLLAENANRVVSREEIYAKVWGYSHEE 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDP---VDSKRFLGY 218 N+V+ +I K LRNKLG P + + R GY Sbjct: 185 -GSNIVDVYI----KNLRNKLGDKPPRLIQTVRGYGY 216 >gi|170748757|ref|YP_001755017.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170655279|gb|ACB24334.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 231 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R IRA + +P+I ++ + +G DD + KP E+LAR+ A+ R Sbjct: 60 IELCRRIRARRETERLPVIMLTARGEEGDRVRGLGTGADDYIVKPFSVPELLARIRALLR 119 Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R K ++ +R G + + G GE L E R+LE+LM G+ ++ Q+ Sbjct: 120 RAKPAHVSDRLAAGDLELDRTGHRVRRGGEELHLGPTEFRLLEFLMLAPGRVFSREQLLD 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ H+ +LRK L DP+ + R GY+ D Sbjct: 180 GVWG-HDVYIDERTVDVHVGRLRKALNGPRQADPIRTVRGSGYAFD 224 >gi|206974313|ref|ZP_03235230.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217958161|ref|YP_002336705.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222094323|ref|YP_002528382.1| response regulator [Bacillus cereus Q1] gi|206747553|gb|EDZ58943.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217064677|gb|ACJ78927.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221238380|gb|ACM11090.1| probable response regulator [Bacillus cereus Q1] Length = 223 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 11/162 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + RI + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR S Sbjct: 62 IQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR---S 118 Query: 123 NNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N IR +F +D +V G+ L ++ +LEYL+ N GK + + QIF + Sbjct: 119 GNLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +G FD +VE ++ LRKKL G+ + + R +GY Sbjct: 179 WG-FDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218 >gi|313890176|ref|ZP_07823811.1| putative response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026] gi|313121537|gb|EFR44641.1| putative response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026] Length = 224 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 2/134 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K + N G +RV D +V G L Sbjct: 91 FELGADDYLTKPFYLEELKMRIQALLKRTGKFNENSITFGNLRVDLDRNAVKVNGSAVEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L YL+ N+ + K+QIF I+G FD +VVE ++SK+RKKL++ Sbjct: 151 LGKEYDLLIYLLQNQNVILPKSQIFDRIWG-FDSDTTISVVEVYVSKIRKKLKDTDFATN 209 Query: 210 VDSKRFLGYSIDWN 223 + + R +GY + N Sbjct: 210 LQTLRSVGYILKAN 223 >gi|90022993|ref|YP_528820.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89952593|gb|ABD82608.1| response regulator receiver [Saccharophagus degradans 2-40] Length = 225 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 80/163 (49%), Gaps = 9/163 (5%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ + +RA + P++ ++ Q +D ++G DD + KP H E+ AR A+ RR Sbjct: 60 IEVVKTLRARGRNFPILILTARGHWQDKVDGLEAGADDYLVKPFHTEELRARANALIRR- 118 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S +A GPI + + + + G L E LEYL N GK ++KT + Sbjct: 119 --SAGKAAPEMVFGPININTANKSVSLNGAAVELTSFEYNTLEYLALNAGKPISKTVLTE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y D + NV+E I +LRKKL P+ + R LGY Sbjct: 177 HLYHQ-DFERDSNVIEVFIGRLRKKLDPDGDLKPIKTVRGLGY 218 >gi|323485737|ref|ZP_08091073.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum WAL-14163] gi|323693077|ref|ZP_08107296.1| DNA-binding response regulator ResD [Clostridium symbiosum WAL-14673] gi|323400917|gb|EGA93279.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum WAL-14163] gi|323502831|gb|EGB18674.1| DNA-binding response regulator ResD [Clostridium symbiosum WAL-14673] Length = 225 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 76/144 (52%), Gaps = 2/144 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R IR +SQVP+I ++ Q L F GVD+ ++KP + ++ARV AI RR Sbjct: 65 EVCRTIRKYSQVPIIMLTARGEEQDELQGFSLGVDEYISKPFSPKILVARVEAILRRSST 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +S + G I + V G+ L +E ++ Y N+G +++ +I + ++ Sbjct: 125 MSQEVIDVGGIHIDKSAHQVLVDGKNVDLSYKEFELITYFAENQGIALSREKILNNVWN- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR KL +K Sbjct: 184 YDYFGDARTIDTHVKKLRSKLGDK 207 >gi|163759086|ref|ZP_02166172.1| probable transcription regulator protein [Hoeflea phototrophica DFL-43] gi|162283490|gb|EDQ33775.1| probable transcription regulator protein [Hoeflea phototrophica DFL-43] Length = 228 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H E+LAR+ A+ RR +++ GP+R+ + V G L Sbjct: 91 IDAGADDYVTKPFHVEEVLARIRALIRRASGHASSEIVCGPVRLDTAASKASVDGTTLKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + + V++T++ +Y FD + N +E + +LRK K+G + Sbjct: 151 TSHEFRLLSYLMHHMDQVVSRTELVEHMYDQDFDR--DSNTIEVFVGRLRK----KIGVE 204 Query: 209 PVDSKRFLGYSI 220 +++ R LGY + Sbjct: 205 LIETVRGLGYRM 216 >gi|229099979|ref|ZP_04230899.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29] gi|228683407|gb|EEL37365.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29] Length = 214 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 21/170 (12%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ ++IR+ S +P+I ++ Q + FD G+DD + KP ++ RV A+ RR Sbjct: 56 FEVAKMIRSQSNIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRR-- 113 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKT 171 SNN++ T VF R+ V G+ + PL +E IL+ L+ N K + + Sbjct: 114 -SNNQS-TDNHFVF---RELHVNGDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRE 168 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I I+G ++ A + ++++H+ +RK KL + + + +GY ID Sbjct: 169 NIVEKIWG-YEYAGDTRMIDTHMKNIRK----KLDIPYIKTVKGIGYKID 213 >gi|30023068|ref|NP_834699.1| two-component response regulator VanRB [Bacillus cereus ATCC 14579] gi|30265077|ref|NP_847454.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42784219|ref|NP_981466.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47530583|ref|YP_021932.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49480366|ref|YP_039053.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140496|ref|YP_086334.1| response regulator [Bacillus cereus E33L] gi|65317022|ref|ZP_00389981.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118480119|ref|YP_897270.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|165870904|ref|ZP_02215556.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634910|ref|ZP_02393228.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167639953|ref|ZP_02398221.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685986|ref|ZP_02877209.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170707061|ref|ZP_02897518.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177652353|ref|ZP_02934856.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567210|ref|ZP_03020125.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033021|ref|ZP_03100434.1| DNA-binding response regulator [Bacillus cereus W] gi|196040431|ref|ZP_03107731.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196047515|ref|ZP_03114725.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206970050|ref|ZP_03231003.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206978207|ref|ZP_03239087.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|218234504|ref|YP_002369838.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218906232|ref|YP_002454066.1| DNA-binding response regulator [Bacillus cereus AH820] gi|222098485|ref|YP_002532543.1| response regulator [Bacillus cereus Q1] gi|225867018|ref|YP_002752396.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227817807|ref|YP_002817816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229601053|ref|YP_002869274.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687368|ref|ZP_05151225.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725381|ref|ZP_05187164.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254733723|ref|ZP_05191439.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254740561|ref|ZP_05198252.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254753177|ref|ZP_05205213.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761520|ref|ZP_05213541.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|270000517|ref|YP_003329022.1| DNA-binding response regulator [Bacillus cereus AH187] gi|296505470|ref|YP_003667170.1| two-component response regulator VanRB [Bacillus thuringiensis BMB171] gi|301056524|ref|YP_003794735.1| response regulator [Bacillus anthracis CI] gi|29898628|gb|AAP11900.1| Two-component response regulator vanRB [Bacillus cereus ATCC 14579] gi|30259754|gb|AAP28940.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42740150|gb|AAS44074.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47505731|gb|AAT34407.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49331922|gb|AAT62568.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973965|gb|AAU15515.1| response regulator [Bacillus cereus E33L] gi|118419344|gb|ABK87763.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|164713413|gb|EDR18938.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167512034|gb|EDR87412.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167529660|gb|EDR92409.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170128164|gb|EDS97034.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670450|gb|EDT21190.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082359|gb|EDT67425.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561714|gb|EDV15684.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994450|gb|EDX58405.1| DNA-binding response regulator [Bacillus cereus W] gi|196021629|gb|EDX60326.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028563|gb|EDX67170.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|206734627|gb|EDZ51796.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206743566|gb|EDZ54993.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217067588|gb|ACJ81838.1| DNA-binding response regulator [Bacillus cereus AH187] gi|218162461|gb|ACK62453.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218536647|gb|ACK89045.1| DNA-binding response regulator [Bacillus cereus AH820] gi|221242544|gb|ACM15254.1| response regulator [Bacillus cereus Q1] gi|225786171|gb|ACO26388.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227003747|gb|ACP13490.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229265461|gb|ACQ47098.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|296326522|gb|ADH09450.1| two-component response regulator VanRB [Bacillus thuringiensis BMB171] gi|300378693|gb|ADK07597.1| response regulator [Bacillus cereus biovar anthracis str. CI] gi|324328974|gb|ADY24234.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] gi|326942852|gb|AEA18748.1| two-component response regulator VanRB [Bacillus thuringiensis serovar chinensis CT-43] Length = 221 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 84/163 (51%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV A+ RR Sbjct: 63 ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 122 Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + + + S V G L +E I+ L+ NRGK ++++ + + ++ Sbjct: 123 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ + V+++HI LRK KLG + + + +GY I+ Sbjct: 183 G-YEHYGDVRVIDTHIKNLRK----KLGIPYIKTVKGIGYKIE 220 >gi|226309940|ref|YP_002769834.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092888|dbj|BAH41330.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 224 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L R +R P++ ++ S+++ ++ D+G DD + KP E+ ARV A+ RR Sbjct: 60 LSLVRTLRTKGIMTPVLFLTAKDSVESRVEGLDAGADDYLVKPFAAEELTARVRALLRRQ 119 Query: 120 KVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N E GP+ + + D V E L +E +L+Y + NR + + + QIF + Sbjct: 120 GKQNTEGELAYGPLSLKINEYDGFVDDEPMKLTTKEYELLKYFLQNREQILTRQQIFDRV 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +G+ EA VV+ ++ LRKKL GF + + R +GY Sbjct: 180 WGIDSEA-NYGVVDLYVHYLRKKLGAYEGF--IRTIRNVGY 217 >gi|187779416|ref|ZP_02995889.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC 15579] gi|187773041|gb|EDU36843.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC 15579] Length = 221 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 98/199 (49%), Gaps = 19/199 (9%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQ 85 +L A + + A+E F G + ++ LP+I IR S VP+I ++ + Sbjct: 27 YLVEVATDGLIAVEMFREGNFDLIILDVMLPKIDGFVVCEIIRKESSVPIIMLTALGEEE 86 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEV 142 + F+ VDD + KP ++ RV A+ RR L+ +N+ I ++ V Sbjct: 87 DEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANGLEENNSTLTFEEITIYPSNYKTLV 146 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 G+ L +E +ILE L++N G+ ++ + + I+G +D + V+++HI K LR Sbjct: 147 NGKEIELTYKEFQILEILISNVGRVFSRESLLNQIWG-YDYFGDTRVIDTHI----KNLR 201 Query: 203 NKLGFDPVDSKRFLGYSID 221 KL D + + R +GY I+ Sbjct: 202 QKLNIDYIKTIRGVGYKIE 220 >gi|262089655|gb|ACY24751.1| two-component response regulator [uncultured organism] Length = 222 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 2/131 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 P++ I+ + + D G DD + KP RE+ AR+ A+ RR +++ E G Sbjct: 72 NAPILVITARSEIDDKVSLLDLGADDYLVKPFDLRELEARLRALLRRSGGQASSSIEVGN 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + V G+ L RRE R+LE L+++ GK V K ++ + ++ FDE+V N + Sbjct: 132 LALDLAALNASVDGKALELGRREFRLLEILVSHVGKVVPKERLMNQLFN-FDESVSINAL 190 Query: 191 ESHISKLRKKL 201 E HIS+LRKKL Sbjct: 191 ELHISRLRKKL 201 >gi|315586395|gb|ADU40776.1| DNA-binding response regulator [Helicobacter pylori 35A] Length = 229 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 32/231 (13%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55 M VL+ ++ V G I + G++++GF SLE E+L D+ + ++ Sbjct: 7 MRVLLIEKNSVLGGEI----EKGLNVKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 57 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 + + RI HS + ++ SD P+ + + F+ G DD + KP +R I A VA I Sbjct: 58 DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARI 115 Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RL+ S+N E G + + D GR+ V+G+ F +L +L +R + Sbjct: 116 EARLRFWSSNVIEIGDLTISPDEEKIIYKGREVGVKGKPF-------EVLTHLARHRDQI 168 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+K Q+ AI+ E V NV+E I+++R+K+ LG V++ R GY Sbjct: 169 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 218 >gi|260431923|ref|ZP_05785894.1| DNA-binding response regulator [Silicibacter lacuscaerulensis ITI-1157] gi|260415751|gb|EEX09010.1| DNA-binding response regulator [Silicibacter lacuscaerulensis ITI-1157] Length = 223 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 108/222 (48%), Gaps = 4/222 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + +G +A G GV + S+E ++ D ++ L G + Sbjct: 4 LMIEDAEDLAEGVVAHLGRSGVVCDLATSIEAARDFRAVQFYDAILLDINLP-DGSGLGF 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L I ++P++ ++ +++ + D G DD + KP RE+ AR+ A+ RR Sbjct: 63 LDEIRGGGDRIPVLMLTALTAVEDRVAALDKGADDYLGKPFDQRELEARLRALVRRDADR 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + GP+ R + G+ L RE +L+ L+ + G+ ++K +++ ++YG Sbjct: 123 KSEQITLGPLVYAPKDRSATLGGKRLNLTAREAAVLDALIRHEGQFLSKARLYDSLYGFE 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D V N +E +I++LRKK G + ++R +GY I + Sbjct: 183 DADVGVNAIELYIARLRKKFSGS-GV-AITTQRGVGYRIGLH 222 >gi|15603950|ref|NP_220465.1| transcriptional activator protein CZCR (czcR) [Rickettsia prowazekii str. Madrid E] gi|3860641|emb|CAA14542.1| TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR (czcR) [Rickettsia prowazekii] gi|292571668|gb|ADE29583.1| Transcriptional activator protein CzcR [Rickettsia prowazekii Rp22] Length = 237 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 77/163 (47%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A + P++ +S + F SG DD + KP E++AR+ AI RR S Sbjct: 63 LLRLRAAKIKTPILILSSLTDTDQKITSFSSGADDYLTKPFVREELIARIKAIVRR---S 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + I V D R EV G+ L +E ILE L+ RG + K + +Y Sbjct: 120 KGHAASIFRFDKISVNLDTRSVEVDGKKLHLTNKEYSILELLILRRGTILTKEMFLNHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 DE E +++ I KLRKKL + G D +D+ GY + Sbjct: 180 STVDEP-EMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYML 221 >gi|254488127|ref|ZP_05101332.1| transcriptional regulator CtrA [Roseobacter sp. GAI101] gi|214044996|gb|EEB85634.1| transcriptional regulator CtrA [Roseobacter sp. GAI101] Length = 239 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 4/151 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S ++ + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRLSRI--ETPILILSGADDTESKIKGFGFGADDYLTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + +TG + V D + V + L +E ++ E L +G + K + Sbjct: 117 RRYKGHSQSVIQTGQVSVNLDAKTVTVDDKTVHLTGKEYQMFELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 +YG DE E +++ I KLRKKL G Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSTATG 206 >gi|218439703|ref|YP_002378032.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218172431|gb|ACK71164.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 799 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 5/154 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPI 131 P++ ++ + D+G DD + KP + +E+LARV A+ RR +S+ + GP+ Sbjct: 73 TPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGGLSSTPLLQWGPL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + +GE+ L +E ILE + NR + +++ + ++ FDEA EN V Sbjct: 133 NLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLWS-FDEAPTENAVR 191 Query: 192 SHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223 + I LR+KL+ K G P +++ LGY ++ N Sbjct: 192 TQIKSLRQKLK-KAGASPNLIETVYGLGYRLNKN 224 >gi|114569220|ref|YP_755900.1| transcription regulator CtrA [Maricaulis maris MCS10] gi|114339682|gb|ABI64962.1| cell cycle transcriptional regulator CtrA / two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 231 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL+ R+ A P++ ++ + + G DD + KP H E++AR+ AI Sbjct: 59 GFDVLKTLRV--AKVDTPILILTGNADIDNKVRGLGCGADDYMTKPFHKDEMVARIHAIV 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + +TG I V D + EV+G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSIIKTGSIGVNLDAKTVEVEGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +YG DE E +++ I KLRKKL Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201 >gi|197301269|ref|ZP_03166355.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC 29176] gi|197299658|gb|EDY34172.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC 29176] Length = 225 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 104/198 (52%), Gaps = 15/198 (7%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 LV++GY L +DGV +++ F +EE +D+S + ++ ++ R IR Sbjct: 23 LVREGYNVLEAEDGVEAMDIF----YEE-------KDISLLILDVMMPRMDGWQVCREIR 71 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRA 126 S+VP+I ++ + L FD GVD+ ++KP + ++ARV AI RR S+ + Sbjct: 72 ESSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVNAILRRTLGSDAGDVM 131 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 E G I + ++ G+ L +E +L Y + NRG +++ +I + ++ +D + Sbjct: 132 EAGGITIDKAAHIVKIDGKPIELSYKEFELLTYFVENRGIALSREKILNNVWN-YDYFGD 190 Query: 187 ENVVESHISKLRKKLRNK 204 +++H+ KLR KL +K Sbjct: 191 ARTIDTHVKKLRSKLGDK 208 >gi|167627435|ref|YP_001677935.1| response regulator receiver protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241668005|ref|ZP_04755583.1| response regulator receiver protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876539|ref|ZP_05249249.1| two-component system response regulator [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|167597436|gb|ABZ87434.1| response regulator receiver protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|254842560|gb|EET20974.1| two-component system response regulator [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 228 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 78/147 (53%), Gaps = 7/147 (4%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R +VP+I ++ L+ + D G DD + KP +E++AR+ AI RR+ Sbjct: 60 LEVLRNVRNKGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRI 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ I+ +P + G + P+ ++E +L L+ N G+ V KTQ+ Sbjct: 120 DTRSGKSTKEEIKFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLL 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 +Y D+ ++ N +E H+ LRKK+ Sbjct: 180 EEVYS-TDKEMDTNTLEVHMHNLRKKI 205 >gi|325663532|ref|ZP_08151942.1| hypothetical protein HMPREF0490_02683 [Lachnospiraceae bacterium 4_1_37FAA] gi|331087057|ref|ZP_08336131.1| hypothetical protein HMPREF0987_02434 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470431|gb|EGC73662.1| hypothetical protein HMPREF0490_02683 [Lachnospiraceae bacterium 4_1_37FAA] gi|330409337|gb|EGG88784.1| hypothetical protein HMPREF0987_02434 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 224 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 3/164 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE L IRA P++ ++ + F G DD + KP E+ ARV A Sbjct: 56 GEDGFSLCGRIRAEVDCPILFLTAKTEDAALVQGFGLGADDYIKKPFSIAELRARVNAHL 115 Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR RA G +R ++ V+ ++ PL + E I E+L + G+ +K Q++ Sbjct: 116 RREGRQPVRAMARGGVRFDMQAKEAMVEEQILPLTKGEYEICEHLALHAGQVFSKEQLYE 175 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 A++G FD + + HI +R KL+ K G P+++ +GY Sbjct: 176 AVFG-FDAEGDPGTIAEHIKNIRAKLK-KYGKSPIETVWGMGYK 217 >gi|190890639|ref|YP_001977181.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190695918|gb|ACE90003.1| putative two-component response regulator protein [Rhizobium etli CIAT 652] Length = 225 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 2/153 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AE 127 A +Q P++ ++ ++ + D+G DD + KP H+ E+ AR+ A+ RR V++ E Sbjct: 69 AGAQTPVLVLTARGAIDERIAGLDAGADDYLAKPFHNGELTARIRALSRRSPVTSMPILE 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 +++ R G L E+ +LE LM N GK VAKT+I A + F + Sbjct: 129 FAALKLDVASRQVTCAGHDVALAPSEKGLLELLMRNGGKVVAKTKIEHA-FSEFGDERSS 187 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N VE +S+LRKKL +++ R +GY + Sbjct: 188 NAVELAVSRLRKKLEGHKTRLSIETIRGVGYMM 220 >gi|150388383|ref|YP_001318432.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948245|gb|ABR46773.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 236 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 103/214 (48%), Gaps = 21/214 (9%) Query: 11 VKDGYIALFGDD-GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-------- 61 +KD I L DD +S LE E ++ S + + A E FL K + VL Sbjct: 1 MKDKKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGL 60 Query: 62 ---ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++ + IR S P+I ++ L+ + G DD V KP E+LAR+ A+ RR Sbjct: 61 DGYQVCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRR 120 Query: 119 LKVSN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 ++ + NR E + D + ++ +PRRE ++L+YLM + + Sbjct: 121 IEQDHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKR 180 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 ++ I+G +D E+ V++ +I +LRK+L++K Sbjct: 181 EELIEGIWG-WDFEGEDRVIDLYIKRLRKRLKSK 213 >gi|153853122|ref|ZP_01994531.1| hypothetical protein DORLON_00516 [Dorea longicatena DSM 13814] gi|149753908|gb|EDM63839.1| hypothetical protein DORLON_00516 [Dorea longicatena DSM 13814] Length = 227 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 87/161 (54%), Gaps = 6/161 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + +++ + ++ +S + ++ D+G +D + KP H +E+ AR+ ++ RR V Sbjct: 65 LKELRQSNEETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKFVQ 124 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E+G I + R+ + L R+E+ ILEYL+ N G+ V++ ++ ++ Sbjct: 125 KDVCLESGDIMFDTIKREAYAKETKISLTRKEKGILEYLLLNLGRPVSQEELMEHVW--- 181 Query: 182 DEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +V+ + H+S LR+KL+ LG+D + +K GY I Sbjct: 182 DASVDSFSGAIRVHMSSLRRKLKAVLGYDAIMNKVGEGYKI 222 >gi|60117371|gb|AAX14447.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of Drosophila mojavensis] Length = 221 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 2/167 (1%) Query: 37 WLQSSA-REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 W+ S+ D+ ++ L G + L R+ A +VP++ +S ++ G Sbjct: 5 WVSSNGDYYDLVILDIHLPGDIDGYDILLRLRSAKIKVPVLILSCISAVNHKAKGLGYGA 64 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154 DD + KP H E+LAR+ AI RR K + + G I + D R EV+G+ L +E Sbjct: 65 DDYLTKPFHKSELLARIKAIVRRTKGHPESVIKIGNININFDHRIVEVKGKTVHLTNKEY 124 Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++E L +G + K + +Y DE + +V+ + KLRKKL Sbjct: 125 SMIELLALRKGTVLTKEMFLNHLYNGLDEPSDNKIVDVFMCKLRKKL 171 >gi|329896136|ref|ZP_08271349.1| two component transcriptional regulator, winged helix family [gamma proteobacterium IMCC3088] gi|328921955|gb|EGG29320.1| two component transcriptional regulator, winged helix family [gamma proteobacterium IMCC3088] Length = 214 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121 L I + + P++ ++ + + D+G DD + KP E+ AR+ + RRL Sbjct: 58 LASIRQKKHRFPILILTARGEVDDKVKGLDAGADDYMAKPFDFLELCARLRVLERRLGTA 117 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + + + + EV G+ LPRRE +L+ LM N+G+ V + Q+ S +Y Sbjct: 118 STSTISISNVVLHINTHQVEVGGKDLDLPRREYMLLKCLMENQGRVVTRDQLESRLYHWG 177 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE + N +E H+ LRKKL + + + R LGY++ Sbjct: 178 DE-ISSNALEVHVHHLRKKLPDAF----IKTIRGLGYTV 211 >gi|229137374|ref|ZP_04265986.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|228646073|gb|EEL02295.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 229 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 11/162 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + RI + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR S Sbjct: 68 IQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR---S 124 Query: 123 NNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N IR +F +D +V G+ L ++ +LEYL+ N GK + + QIF + Sbjct: 125 GNLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +G FD +VE ++ LRKKL G+ + + R +GY Sbjct: 185 WG-FDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224 >gi|163839170|ref|YP_001623575.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952646|gb|ABY22161.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 231 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 10/164 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ E+ R +RA S P+I ++ S + + G DD V KP RE++ARV A+ Sbjct: 57 GQSGTEVCRQLRARSSAPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVL 116 Query: 117 RRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR ++ + GP+R+ + V GE LP +E +LE L+ N G+ + + Q Sbjct: 117 RRQGEPEELMTTTVQAGPVRMDIERHVVSVNGEQVSLPLKEFELLEMLLRNSGRVLTRGQ 176 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + ++G D + ++ H+ K+LR+K+ DP S R+L Sbjct: 177 LIDRVWG-SDYVGDTKTLDVHV----KRLRSKIEPDP-SSPRYL 214 >gi|15836991|ref|NP_297679.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c] gi|28199554|ref|NP_779868.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|71274658|ref|ZP_00650946.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71899630|ref|ZP_00681784.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|71901814|ref|ZP_00683880.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|170730925|ref|YP_001776358.1| response regulator receiver protein [Xylella fastidiosa M12] gi|182682290|ref|YP_001830450.1| two component transcriptional regulator [Xylella fastidiosa M23] gi|9105223|gb|AAF83199.1|AE003890_8 two-component system, regulatory protein [Xylella fastidiosa 9a5c] gi|28057669|gb|AAO29517.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|71164390|gb|EAO14104.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71728413|gb|EAO30578.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|71730582|gb|EAO32659.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|167965718|gb|ACA12728.1| response regulator receiver protein [Xylella fastidiosa M12] gi|182632400|gb|ACB93176.1| two component transcriptional regulator, winged helix family [Xylella fastidiosa M23] gi|307578567|gb|ADN62536.1| two component transcriptional regulator [Xylella fastidiosa subsp. fastidiosa GB514] Length = 227 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 4/149 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 + P++ ++ S Q+ ++ G DD + KP H E+LARV A+ RR S E G Sbjct: 72 KFPVLILTARSSWQSKVEGLKQGADDYLVKPFHVEELLARVNALLRRAAGWSKPTLECGS 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189 + + + V G L E ++LEYLM + G+ V+K + IY FD + NV Sbjct: 132 VALDLAAQTVSVNGTNVDLTSYEYKVLEYLMVHAGELVSKADLTEHIYQQDFDR--DSNV 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E I +LRKKL P+++ R GY Sbjct: 190 LEVFIGRLRKKLDADGDLKPIETVRGRGY 218 >gi|312959545|ref|ZP_07774062.1| DNA-binding response regulator [Pseudomonas fluorescens WH6] gi|311286262|gb|EFQ64826.1| DNA-binding response regulator [Pseudomonas fluorescens WH6] Length = 223 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 76/140 (54%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + Sbjct: 63 LARLRARGKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLG 122 Query: 123 NNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R +T + V+ D R V GE+ L RE+ +LE L+A G+ ++K Q+ S ++GL Sbjct: 123 GERQQTCGVLVYDLDTRRFTVGGELMTLTSREQAVLEALIARPGRVMSKEQLASQVFGL- 181 Query: 182 DEAVEENVVESHISKLRKKL 201 DE + +E ++ +LRKKL Sbjct: 182 DEEASPDAIEIYVHRLRKKL 201 >gi|306825660|ref|ZP_07458999.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432021|gb|EFM34998.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 218 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 109/225 (48%), Gaps = 18/225 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++G D G E + + EE L+ + +V+ + + LE Sbjct: 4 LIVEDEEMIREGISDYLADCG--YETIQAADGEEALEQFSSYEVALVLLDIQMPKLNGLE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 62 VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRY--- 118 Query: 123 NNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +TG I + D + + G+ + +E IL+YL+ N G+ + ++QI A Sbjct: 119 ---YDTGRIFSYKDTKVDFESYSASIAGQEIAINAKELEILDYLVKNEGRALTRSQIIDA 175 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + DE + V++ +I K+LR KL D + + R +GY ++ Sbjct: 176 VWKVTDEVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216 >gi|188588874|ref|YP_001919596.1| two-component response regulator [Clostridium botulinum E3 str. Alaska E43] gi|188499155|gb|ACD52291.1| two-component response regulator [Clostridium botulinum E3 str. Alaska E43] Length = 228 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 79/152 (51%), Gaps = 4/152 (2%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ K ++ + IR S +P+I ++ L + FD G DD + KP E+LAR+ Sbjct: 57 LLTKNLNGMDFLKWIRKQSNIPMIVVTSNNCLFDKVLAFDIGADDYILKPFKVEELLARI 116 Query: 113 AAIYRRLKVSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 AI RR + +++++T I S + ++G + LP +E +L +L+ N K Sbjct: 117 KAIIRRCSIESDKSDTISISDLSVNLSTYEVFLKGNIINLPPKEFELLVFLLKNTNKVFT 176 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + ++ I+G +++ + V+ HI +LR+K Sbjct: 177 RKELLDEIWGNHNKS-DCRTVDVHIKRLREKF 207 >gi|325261572|ref|ZP_08128310.1| response regulator DrrA [Clostridium sp. D5] gi|324033026|gb|EGB94303.1| response regulator DrrA [Clostridium sp. D5] Length = 233 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 23/215 (10%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68 L GY+A DG LEG + +++ D+ ++ L G V E+ IR Sbjct: 30 LTDAGYVAHVAGDG--LEGITAFRQKQY-------DLVLLDLMLPKIDGYAVCEM---IR 77 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 S VP++ ++ L FD DD + KP + +L RV A+ RR + + E Sbjct: 78 KESNVPVLMLTALDEEDDQLKGFDVLADDYITKPFSVKLVLKRVEALLRRTREDHCEDEN 137 Query: 129 GPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + S DP V GE PL + E +L LM N+G+ + ++ ++G +D Sbjct: 138 ALLCHGSIQLDPVSLRVYVSGEDVPLTKLEFDLLHLLMKNKGRVFTRDELLDLVWG-YDF 196 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 A + V HI LR+ KLG D +++ R +GY Sbjct: 197 AGYDKAVNIHIMNLRR----KLGADCIETIRGVGY 227 >gi|308176319|ref|YP_003915725.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743782|emb|CBT74754.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 226 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 25/218 (11%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L ++G+ DDG+ EFE R + L+ G+ E+ R IR Sbjct: 21 LEREGFEVRIADDGLK----AVTEFE-------RHGADLVLLDLMLPGQPGTEVIRQIRL 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVSNNR 125 +SQVP+I ++ S + + G DD V KP RE+LAR+ A+ RR ++ +N Sbjct: 70 NSQVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRQGEGEELISNV 129 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 GP+R+ + V+ +P +E +LE L+ N G+ + + Q+ ++G D Sbjct: 130 VTAGPVRMDVERHVVSVENTEVSMPLKEFELLEMLLRNAGRVLTRGQLIDRVWG-SDYVG 188 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGY 218 + ++ H+ K+LR+K+ DP +R LGY Sbjct: 189 DTKTLDVHV----KRLRSKIEADPAVPERLVTVRGLGY 222 >gi|307244376|ref|ZP_07526489.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492277|gb|EFM64317.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 224 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 86/152 (56%), Gaps = 5/152 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR-AETGP 130 P++ ++ +L ++ F G +D + KP + E++ARV AI R K+ + + E Sbjct: 72 TPILILTAKEALDDKVEAFTLGANDYLTKPFYMDELVARVYAILRTNGKIKDKKYLEFKD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 +R+ S+ + E L ++ ++LEY + N+G + K QI+ I+G+ +A E +V Sbjct: 132 LRIDSEKNSVYINDEEIELQNKQFKLLEYFVLNKGSILLKEQIYDRIWGIDSDATIE-IV 190 Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 E ++S LRKKL +K +D + +KR +GY +D Sbjct: 191 EVYVSNLRKKL-SKYDYDKYIKTKRKVGYILD 221 >gi|291548407|emb|CBL21515.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 246 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 8/224 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIGK-GE 58 M ++D +++ + G EGF + E + ++ + E + ++ L G+ G Sbjct: 23 MIYCVEDERNIRELLVYTLETTGFEAEGFETGAELDTAMKKNMPELI-LLDIMLPGEDGY 81 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +L+ + +P+I ++ + + + G DD + KP E +ARV A+ RR Sbjct: 82 NILKRLKSDTRTRDIPVIMVTAKEAEFDKVKGLEGGADDYITKPFGMMEFVARVKAVLRR 141 Query: 119 LKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E +RV + QGEV L R+E +LEYLM N+G +++ QI Sbjct: 142 CARQSEERELHCKGLRVNVSRHEVSYQGEVKELTRKEFELLEYLMENKGLVMSRNQILCH 201 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D E V+ H+ LR+KL + +++ R +GY I Sbjct: 202 VWG-YDFDGETRTVDVHVRTLRQKLGE--AGNLIETVRGVGYRI 242 >gi|228917667|ref|ZP_04081208.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228923764|ref|ZP_04087042.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228930063|ref|ZP_04093073.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936917|ref|ZP_04099666.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228942200|ref|ZP_04104740.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228948764|ref|ZP_04111041.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228955296|ref|ZP_04117304.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961275|ref|ZP_04122894.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228975129|ref|ZP_04135688.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981768|ref|ZP_04142063.1| Two-component response regulator vanRB [Bacillus thuringiensis Bt407] gi|228988285|ref|ZP_04148380.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229049720|ref|ZP_04194277.1| Two-component response regulator vanRB [Bacillus cereus AH676] gi|229072518|ref|ZP_04205720.1| Two-component response regulator vanRB [Bacillus cereus F65185] gi|229082277|ref|ZP_04214740.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2] gi|229112476|ref|ZP_04242013.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15] gi|229124573|ref|ZP_04253758.1| Two-component response regulator vanRB [Bacillus cereus 95/8201] gi|229130288|ref|ZP_04259247.1| Two-component response regulator vanRB [Bacillus cereus BDRD-Cer4] gi|229142354|ref|ZP_04270873.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST26] gi|229147580|ref|ZP_04275925.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST24] gi|229153223|ref|ZP_04281402.1| Two-component response regulator vanRB [Bacillus cereus m1550] gi|229158637|ref|ZP_04286695.1| Two-component response regulator vanRB [Bacillus cereus ATCC 4342] gi|229181325|ref|ZP_04308655.1| Two-component response regulator vanRB [Bacillus cereus 172560W] gi|229187280|ref|ZP_04314425.1| Two-component response regulator vanRB [Bacillus cereus BGSC 6E1] gi|229193313|ref|ZP_04320263.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876] gi|229199181|ref|ZP_04325862.1| Two-component response regulator vanRB [Bacillus cereus m1293] gi|228584287|gb|EEK42424.1| Two-component response regulator vanRB [Bacillus cereus m1293] gi|228590114|gb|EEK47983.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876] gi|228596290|gb|EEK53965.1| Two-component response regulator vanRB [Bacillus cereus BGSC 6E1] gi|228602218|gb|EEK59709.1| Two-component response regulator vanRB [Bacillus cereus 172560W] gi|228624621|gb|EEK81390.1| Two-component response regulator vanRB [Bacillus cereus ATCC 4342] gi|228630322|gb|EEK86972.1| Two-component response regulator vanRB [Bacillus cereus m1550] gi|228635870|gb|EEK92355.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST24] gi|228641124|gb|EEK97436.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST26] gi|228653221|gb|EEL09100.1| Two-component response regulator vanRB [Bacillus cereus BDRD-Cer4] gi|228658913|gb|EEL14568.1| Two-component response regulator vanRB [Bacillus cereus 95/8201] gi|228670856|gb|EEL26163.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15] gi|228700709|gb|EEL53232.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2] gi|228710494|gb|EEL62467.1| Two-component response regulator vanRB [Bacillus cereus F65185] gi|228722633|gb|EEL74021.1| Two-component response regulator vanRB [Bacillus cereus AH676] gi|228771457|gb|EEM19928.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228777880|gb|EEM26152.1| Two-component response regulator vanRB [Bacillus thuringiensis Bt407] gi|228784650|gb|EEM32670.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228798396|gb|EEM45390.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804429|gb|EEM51040.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228810896|gb|EEM57240.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228817534|gb|EEM63619.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228822746|gb|EEM68629.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829562|gb|EEM75189.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228835893|gb|EEM81256.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228841904|gb|EEM87010.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 216 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 84/163 (51%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV A+ RR Sbjct: 58 ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 117 Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + + + S V G L +E I+ L+ NRGK ++++ + + ++ Sbjct: 118 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ + V+++HI LRK KLG + + + +GY I+ Sbjct: 178 G-YEHYGDVRVIDTHIKNLRK----KLGIPYIKTVKGIGYKIE 215 >gi|39934984|ref|NP_947260.1| two-component transcriptional regulator FeuP [Rhodopseudomonas palustris CGA009] gi|192290518|ref|YP_001991123.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|39648835|emb|CAE27356.1| two-component transcriptional regulator FeuP, winged helix family [Rhodopseudomonas palustris CGA009] gi|192284267|gb|ACF00648.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] Length = 224 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 10/164 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VLE R R +P++ ++ + FD+G DD V KP H E+LAR+ A+ Sbjct: 59 GISVLEAWR--RNSRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALL 116 Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + + GP+ + + V G L E R+L YLM + G+ V++T++ Sbjct: 117 RRSAGHAQSELTCGPVVLDTRTGRVSVSGNPVKLTSHEYRLLAYLMHHSGRVVSRTELVE 176 Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y FD + N +E + ++RK KLG D + + R LGY Sbjct: 177 HLYDQDFDR--DSNTIEVFVGRIRK----KLGVDIIQTVRGLGY 214 >gi|154247416|ref|YP_001418374.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161501|gb|ABS68717.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 233 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 3/144 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R A + P++ +S + + + F G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRALRVAKVKTPILILSGLANTEDKVKGFGFGADDYLTKPFHKDEMVARIHAIVRRSK 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +TG + V D + EV+ L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVIQTGDLVVNLDTKTVEVENNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRN 203 DE E +++ I KLRKKL N Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLAN 203 >gi|145294521|ref|YP_001137342.1| hypothetical protein cgR_0476 [Corynebacterium glutamicum R] gi|140844441|dbj|BAF53440.1| hypothetical protein [Corynebacterium glutamicum R] Length = 232 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 14/191 (7%) Query: 27 EGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF+++ + L +R ++ + L+ G ++ + +R+ S VP+I ++ S Sbjct: 24 EGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGTDVCKELRSVSTVPVIMVTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP----------IRV 133 + + G DD V KP RE++AR+ A+ RR V+ AE P +R+ Sbjct: 84 EIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGVTETEAEELPLDDQILEGGRVRM 143 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D V GE +P +E +LEYL+ N G+ + + Q+ I+G D + ++ H Sbjct: 144 DVDSHTVTVDGEPVSMPLKEFDLLEYLLRNAGRVLTRGQLIDRIWG-ADYVGDTKTLDVH 202 Query: 194 ISKLRKKLRNK 204 + +LR K+ + Sbjct: 203 VKRLRSKIEEE 213 >gi|254454488|ref|ZP_05067925.1| DNA-binding response regulator CtrA [Octadecabacter antarcticus 238] gi|198268894|gb|EDY93164.1| DNA-binding response regulator CtrA [Octadecabacter antarcticus 238] Length = 246 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S ++ L F G DD + KP H E++AR+ AI Sbjct: 41 GHEVLRQLRLSRI--ETPILILSGEDGTESKLKGFGFGADDYMTKPFHREELVARIHAII 98 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + +TG I V D + EV L +E ++LE L +G + K + Sbjct: 99 RRSKGHAQSIIKTGVIAVNLDAKTVEVDSSPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 158 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 +YG DE E +++ I KLRKKL G Sbjct: 159 HLYGGMDEP-ELKIIDVFICKLRKKLTEATG 188 >gi|89069237|ref|ZP_01156604.1| two-component system, regulatory protein [Oceanicola granulosus HTCC2516] gi|89045235|gb|EAR51302.1| two-component system, regulatory protein [Oceanicola granulosus HTCC2516] Length = 223 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 107/222 (48%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 ++++D V A G G++ + + E +++L + DV ++ L G G Sbjct: 3 ILIVEDSEDVAAAITAALGRAGMACDRAAGAREAQDYLAAET-YDVVVLDIHLPDGDGRT 61 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L R RA S+ P++ ++ + + ++ D+G DD + KP RE+ ARV + RR Sbjct: 62 ILSDLR--RAGSRTPVLMLTAELEVSSRVNALDAGADDYLVKPFDLRELEARVRVLGRRG 119 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R G + R + G L RRE +L L+A R + +AK QI ++ Sbjct: 120 DSAGSARISVGDLEFDQAARTVRIAGAAVALTRREVSLLGLLVARRDRIIAKEQILERLF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + DE V N VE ++++LRKKL + + R LGY + Sbjct: 180 SM-DEDVGLNTVELYVARLRKKL--AASSVSIVTHRGLGYQL 218 >gi|319936946|ref|ZP_08011356.1| DNA-binding response regulator [Coprobacillus sp. 29_1] gi|319807882|gb|EFW04461.1| DNA-binding response regulator [Coprobacillus sp. 29_1] Length = 219 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 74/140 (52%), Gaps = 1/140 (0%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ ++IR S +P++ IS + L ++ G DD ++KP + A+ A+ +RL Sbjct: 60 EVCKLIRQKSDIPILFISALSEDENKLKGYELGADDFISKPFTPSLLYAKCNALLKRLNK 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N + G I + D + V L +E IL Y + N+ K +++ Q+ ++G + Sbjct: 120 GNESLDVGMIHIDEDTHEVFVNDVEIQLSHKEYLILIYFIENKRKILSRDQLLDHVWG-Y 178 Query: 182 DEAVEENVVESHISKLRKKL 201 D ++ +V++++ KLRKKL Sbjct: 179 DYYGDQRIVDTYVKKLRKKL 198 >gi|296281989|ref|ZP_06859987.1| DNA-binding response regulator CtrA [Citromicrobium bathyomarinum JL354] Length = 231 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 71/142 (50%), Gaps = 2/142 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L ++ A Q P++ +S + + + F G DD V KP H E++AR+ A+ RR K Sbjct: 63 LKKLRVAKVQTPVLILSGISEMDSKVRSFGFGADDYVTKPFHREELVARIHAVVRRSKGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + TG + V D + EV L +E +LE L +G + K + +YG Sbjct: 123 SQSVIRTGKLAVNLDAKTVEVDSARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYGGM 182 Query: 182 DEAVEENVVESHISKLRKKLRN 203 DE E +++ I KLRKKL + Sbjct: 183 DEP-ELKIIDVFICKLRKKLSH 203 >gi|157963325|ref|YP_001503359.1| two component transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157848325|gb|ABV88824.1| two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 224 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 12/222 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D L+ + + G + + + ++L D ++ L G G ++ Sbjct: 3 LLLVEDNTLLVEELVKQLKQAGYVTDSTDKVSEADYLIKETNYDCVILDIGLPDGNGLEL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE R H+ P+I ++ ++ F+SG DD + KP H +E+L R+ A+ +R Sbjct: 63 LESWREQGIHT--PVIMLTARSQWHEKVEGFNSGADDYLGKPFHTQELLVRIQALIQRAH 120 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N+ T +G+ GE F L E R+L+ + + K ++K Q+ Sbjct: 121 GKANTPNKQLTYAGVALDEGQQSVTVGEQTFELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y FD+ E NVVE +++ LRK KLG ++++R GY Sbjct: 181 LYQ-FDDEKESNVVEVYVTHLRK----KLGKTAIETRRGQGY 217 >gi|57239513|ref|YP_180649.1| hypothetical protein Erum7860 [Ehrlichia ruminantium str. Welgevonden] gi|57161592|emb|CAH58520.1| putative response regulator component of a two-component regulatory system [Ehrlichia ruminantium str. Welgevonden] Length = 267 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130 +VP++ +S S+ + G DD V KP H E+LAR+ AI RR + + G Sbjct: 75 KVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAIVRRTRGHPESIVRVGN 134 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I + D + E GE+ L ++E ++E L + G + K S +Y DE ++ ++ Sbjct: 135 IAINLDHKCVECNGEIVHLTKKEYGMIELLSSRLGTVLTKEMFLSHLYRELDEPSDDKII 194 Query: 191 ESHISKLRKKLR 202 + + KLRKKL+ Sbjct: 195 DVFMCKLRKKLK 206 >gi|197103973|ref|YP_002129350.1| phosphate regulon response regulator PhoB [Phenylobacterium zucineum HLK1] gi|196477393|gb|ACG76921.1| phosphate regulon response regulator PhoB [Phenylobacterium zucineum HLK1] Length = 230 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 3/152 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 VP+I ++ + D+G DD V KP E+ AR+ A+ RRL+ ++ +R G Sbjct: 77 NVPIIMLTARGEETDRIRGLDTGADDYVVKPFAMSELAARIRAVLRRLRPGLAEDRVRCG 136 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I + + G L E R+L++ M + G+ ++ Q+ A++G D VE Sbjct: 137 DIIIDRVAHRVKRNGAEVHLGPTEFRLLDHFMQHPGRVFSREQLLDAVWG-SDVYVEART 195 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V+ HI +LRK L DP+ + R GYS+D Sbjct: 196 VDVHIGRLRKALNAADAGDPIRTVRSAGYSLD 227 >gi|28572226|ref|NP_789006.1| two component system response regulator [Tropheryma whipplei TW08/27] gi|28410357|emb|CAD66743.1| putative two component system response regulator [Tropheryma whipplei TW08/27] Length = 227 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 3/156 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ A + P+I +S S + + G DD V KP EILARVAAI RR K+ + Sbjct: 68 RLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKIDDV 127 Query: 125 RAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 A G + + + + ++G + L E ++L Y M N + ++K+QI ++ +D Sbjct: 128 DATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD-YD 186 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + ++VES+IS +R+KL + +KR GY Sbjct: 187 FDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGY 222 >gi|15895992|ref|NP_349341.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15025771|gb|AAK80681.1|AE007771_1 Response regulator (CheY-like receiver domain and HTH-type DNA-binding) [Clostridium acetobutylicum ATCC 824] gi|325510145|gb|ADZ21781.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding) [Clostridium acetobutylicum EA 2018] Length = 225 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 9/152 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE+VL I Q+P+I +S L T L G DD + KP ++ E++ R+ A+ Sbjct: 60 GEQVLTK---INEQFQIPIICVSAKDDLDTKLGMIRDGADDYITKPFNNEELIVRIGAVL 116 Query: 117 RRLKV-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR+ NR + + S+ + E L +E +ILE L++N K K Sbjct: 117 RRMNKGTSIDKTNRFTFKDLVLDSENHIVTINNEPIELTVKEYKILELLISNPKKVFTKQ 176 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 IF +++ + ++E VV H+S LR KL++ Sbjct: 177 NIFESVWS-EEYILDERVVTVHVSNLRNKLKH 207 >gi|312888723|ref|ZP_07748290.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311298826|gb|EFQ75928.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 225 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 87/173 (50%), Gaps = 18/173 (10%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G+G VL+ R + V +I S S+ + + G DD + KP H E+ AR+AA Sbjct: 57 GEGFAVLDFLRTAMRNEAVLII--SARNSIDDKIKGLNIGADDYLTKPFHLAELKARLAA 114 Query: 115 IYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 IYRR K SN + + VF++ GR V L R+E +L Y +AN+GK V Sbjct: 115 IYRR-KTSN----SSNLLVFNEITIDLLGRSVYVNDTTLILTRKEYDMLLYFIANKGKVV 169 Query: 169 AKTQIFSAIYGLFDEA-VEEN--VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +K + ++G DE + +N + +HI LRKK+ + D + S +GY Sbjct: 170 SKNALAEHLWG--DEMDMHDNFDFIYTHIKNLRKKMLDLNAHDYLKSVYGIGY 220 >gi|2598275|emb|CAA73687.1| FeuP protein [Brucella suis 1330] Length = 229 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 8/155 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126 R+ +P++ ++ + D+G DD + KP H E+LAR+ A+ RR +++ Sbjct: 68 RSGRTIPVLMLTARDRWSDKVAGIDAGADDYITKPFHIEEVLARLRALIRRAAGHASSEF 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 GP+ + + + G V L E R+L Y+M N + V++T++ +Y FD Sbjct: 128 VCGPLHLDTKTSKASIDGVVLKLTSHEYRLLSYMMNNMDEVVSRTELVEHLYDQDFDR-- 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E + +LRK K+G D +++ R +GY + Sbjct: 186 DSNTIEVFVGRLRK----KMGVDLIETVRGMGYRM 216 >gi|70726491|ref|YP_253405.1| hypothetical protein SH1490 [Staphylococcus haemolyticus JCSC1435] gi|123660200|sp|Q4L6C6|ARLR_STAHJ RecName: Full=Response regulator ArlR gi|68447215|dbj|BAE04799.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 219 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 2/160 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R P+I I+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 61 LEICRRVRQEQSTPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLRR-Q 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + I++ D + + GE + E +L L NR + + + QI ++G Sbjct: 120 PQKDIIDINGIKIDVDAFNVTINGEQLDFTKTEYDLLYLLATNRNRVLQREQILDHVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 179 YDSEVETNVVDVYIRYLRNKLKPYGKDKTIETVRGVGYVI 218 >gi|68171373|ref|ZP_00544767.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Ehrlichia chaffeensis str. Sapulpa] gi|88658273|ref|YP_507798.1| DNA-binding response regulator [Ehrlichia chaffeensis str. Arkansas] gi|67772423|gb|AAY79413.1| transcriptional activator protein [Ehrlichia chaffeensis] gi|67999198|gb|EAM85854.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Ehrlichia chaffeensis str. Sapulpa] gi|88599730|gb|ABD45199.1| DNA-binding response regulator [Ehrlichia chaffeensis str. Arkansas] Length = 265 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130 +VP++ +S S+ + G DD V KP H E+LAR+ AI RR + + G Sbjct: 75 KVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAIVRRTRGHPESIVRVGN 134 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I + D + E GE+ L ++E ++E L + G + K S +Y DE ++ ++ Sbjct: 135 IAINLDHKCVECNGEIVHLTKKEYGMIELLSSRLGTVLTKEMFLSHLYRELDEPSDDKII 194 Query: 191 ESHISKLRKKLR 202 + + KLRKKL+ Sbjct: 195 DVFMCKLRKKLK 206 >gi|331270877|ref|YP_004385588.1| DNA-binding response regulator [Clostridium botulinum BKT015925] gi|329127269|gb|AEB77213.1| DNA-binding response regulator [Clostridium botulinum BKT015925] Length = 231 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 9/144 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP++ ++ Y + +G DD V KP H E+L +V A+ RR ++ + Sbjct: 71 IRKKSFVPILFLTAYSQESDKTIGYSAGADDYVTKPFSHSELLLKVKALLRRYQIYQPQT 130 Query: 127 ETGPIRVFSDGR--DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ G D E Q G+ PL E +ILE L+ NR + + I+++++ Sbjct: 131 KIQSSKIVIQGLTVDIETQTVLCDGKHIPLTHTEYKILELLITNRKRIFSINHIYNSVWQ 190 Query: 180 LFDEAVEENVVESHISKLRKKLRN 203 D+ V ++ V HI LRKK+ N Sbjct: 191 --DDIVADSAVMVHIKNLRKKIEN 212 >gi|326204762|ref|ZP_08194617.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325985133|gb|EGD45974.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 223 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 107/212 (50%), Gaps = 15/212 (7%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K GY +DG LE ++ +E ++ + + + ++ EL + +R Sbjct: 20 VLAKHGYSYYVANDG--LEAWDIIE---------KQYIDLVISDIMMPNMDGYELVKSLR 68 Query: 69 AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 + +P++ I+ + + + F G DD + KP++ E++ RV A+ RR ++ N R Sbjct: 69 DNGYNMPVLMITAKDTFEDMKNGFRVGTDDYMIKPVNVNEMILRVNALLRRAQIVNERKL 128 Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + D ++GE +P++E IL L++N K K Q+ I+G+ D + Sbjct: 129 IFGDMELSYDELSVNIKGEYMLIPQKEFYILYKLLSNPNKAFTKQQLMDEIWGM-DTESD 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + ++ HIS+LR++ ++ F+ + + R LGY Sbjct: 188 PHTLDVHISRLRERFKDNNQFE-IKTIRGLGY 218 >gi|222107155|ref|YP_002547946.1| two component response regulator [Agrobacterium vitis S4] gi|221738334|gb|ACM39230.1| two component response regulator [Agrobacterium vitis S4] Length = 220 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 19/162 (11%) Query: 67 IRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN- 124 +R H V P+I ++ + + ++ +SG DD + KP + E+ AR++A+ RR N Sbjct: 66 LREHGDVTPIIILTAHDQISDRIEGLNSGADDYLVKPFNLDELTARISAVARRYAAKPNP 125 Query: 125 -----RAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E P R +DG D L RE +L+ L+A G V+K++I A+Y Sbjct: 126 IIRIGTLEINPAERRIADGADS------ISLSSREWAVLDALLARPGAVVSKSRIEEALY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F +E N VE ++S+LRK K+G D + + R +GYSI Sbjct: 180 A-FGSEIESNTVEVYVSRLRK----KIGKDRLLTVRGVGYSI 216 >gi|167625511|ref|YP_001675805.1| two component transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167355533|gb|ABZ78146.1| two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 224 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 12/222 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D L+ + I G + + + ++L D ++ L G G ++ Sbjct: 3 LLLVEDNTLLVEELIKQLKQAGYVTDTTDKVSEADYLIKETNYDCVILDIGLPDGNGLEL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE R H+ P+I ++ ++ F+SG DD + KP H +E+L R+ A+ +R Sbjct: 63 LETWREQGIHT--PVIMLTARSQWHEKVEGFNSGADDYLGKPFHTQELLVRIQALIQRAH 120 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N+ T +G+ GE + L E R+L+ + + K ++K Q+ Sbjct: 121 GKANTPNKQLTYAGVALDEGQQSVTVGEQTYELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y FD+ E NVVE +++ LRK KLG ++++R GY Sbjct: 181 LYQ-FDDEKESNVVEVYVTHLRK----KLGKTAIETRRGQGY 217 >gi|145594981|ref|YP_001159278.1| response regulator receiver [Salinispora tropica CNB-440] gi|145304318|gb|ABP54900.1| response regulator receiver [Salinispora tropica CNB-440] Length = 334 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 6/142 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+IR+ S+VP++ I+ S + +SG DD V KP ILAR++A+ RR + + Sbjct: 170 RMIRSISEVPVVVITARRSETDIIHLLNSGADDYVTKPFSGEHILARISAVLRRYRSGTD 229 Query: 125 RA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R GP+ + R + G L RRE +L YL G+ V++ ++ + ++ Sbjct: 230 REGPGAITVGPLVIGRKERRVTMHGNPLKLTRREYDVLTYLAERVGQVVSRRELMTEVWR 289 Query: 180 LFDEAVEENVVESHISKLRKKL 201 EE ++ HIS LR+KL Sbjct: 290 QARIG-EEQTIDVHISWLRRKL 310 >gi|205372167|ref|ZP_03224982.1| two component transcriptional regulator [Bacillus coahuilensis m4-4] Length = 225 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 7/163 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R IR +P++ ++ + + F G DD ++KP E++ RV A+ RR K+ Sbjct: 62 ELCREIRDLYDLPILMVTAKGESEDKIKGFQQGTDDYISKPFDPHELIMRVKALLRRYKI 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL--PRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N + V D + EV + P+ P +E ++L L ++ G+ ++ Q+ I+G Sbjct: 122 -NTHEKVTIANVVIDAKSVEVTIDQEPIAFPLKEFQLLHKLASHPGQVFSREQLIEEIWG 180 Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + V+SHI K+RKKL + FD V + R LGY ++ Sbjct: 181 SDFDGF--DRTVDSHIKKIRKKLSQQTAFDIV-TIRGLGYRLE 220 >gi|148998276|ref|ZP_01825745.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP11-BS70] gi|149010780|ref|ZP_01832151.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP19-BS75] gi|168485715|ref|ZP_02710223.1| VncR, response regulator [Streptococcus pneumoniae CDC1087-00] gi|168576498|ref|ZP_02722372.1| VncR, response regulator [Streptococcus pneumoniae MLV-016] gi|307067219|ref|YP_003876185.1| CheY-like receiver/winged-helix DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307126802|ref|YP_003878833.1| VncR, response regulator [Streptococcus pneumoniae 670-6B] gi|147755919|gb|EDK62963.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP11-BS70] gi|147765261|gb|EDK72190.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP19-BS75] gi|183571082|gb|EDT91610.1| VncR, response regulator [Streptococcus pneumoniae CDC1087-00] gi|183577727|gb|EDT98255.1| VncR, response regulator [Streptococcus pneumoniae MLV-016] gi|301793794|emb|CBW36185.1| two-component system, response regulator [Streptococcus pneumoniae INV104] gi|306408756|gb|ADM84183.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pneumoniae AP200] gi|306483864|gb|ADM90733.1| VncR, response regulator [Streptococcus pneumoniae 670-6B] Length = 218 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 109/225 (48%), Gaps = 18/225 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++G D G E + + +E L+ + +V+ + + LE Sbjct: 4 LIVEDEEMIREGVSDYLTDCG--YETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGLE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 62 VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRY--- 118 Query: 123 NNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +TG I + D + + G+ P+ +E IL+YL+ N G+ + ++QI A Sbjct: 119 ---YDTGRIFSYKDTKVDFESYSASIAGQEVPINAKELEILDYLVKNEGRALTRSQIIDA 175 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ DE + V++ +I K+LR KL D + + R +GY ++ Sbjct: 176 VWKATDEVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216 >gi|186472785|ref|YP_001860127.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184195117|gb|ACC73081.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 237 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 5/202 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D + + D +L+ E + L S R DV ++ L G+ V Sbjct: 15 LLLIEDNPTLSHWLARMLEQDAFALDTVQDGEAADQLLSMNRYDVVLLDLNLPRLSGKNV 74 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R+ + P++ ++ S+ ++ +G DD + KP RE++ARV + RR Sbjct: 75 LR--RLRQRGDATPVMILTASGSIDEKVELLGAGADDYLVKPFEVRELIARVKVMIRRQS 132 Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S N G + D R ++G + RER +LE L+ GK V+K + +I+ Sbjct: 133 ASTANEVSCGDLAFDIDTRQFTLKGVPLNVTPRERSVLETLILRMGKTVSKAALMDSIFT 192 Query: 180 LFDEAVEENVVESHISKLRKKL 201 D+ E+ +E ++S+LRKKL Sbjct: 193 -HDDQPSEDALEIYVSRLRKKL 213 >gi|326314873|ref|YP_004232545.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371709|gb|ADX43978.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 237 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 7/175 (4%) Query: 48 AIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106 A +A +G G VL R RA + P++ ++ + + D+G DD + KP Sbjct: 58 AAQASPVGSGLAVL---RAARARGDRTPVLVLTARDRTEERIAGLDAGADDYLGKPFDLA 114 Query: 107 EILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 E+ AR+ A+ RR + +++R G + + R + G+ F LP RE +L LM G+ Sbjct: 115 EVEARLRALVRRTQGTDDRTSAGTLVLDRRARRFTLHGQPFELPAREFEVLWELMTPPGR 174 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V+K + + FD+ + +N +E+ IS+LRKKL+ + + R LGY ++ Sbjct: 175 VVSKRSLSDKLSD-FDDMLGDNALEAFISRLRKKLQGSGA--GIRTLRGLGYMLE 226 >gi|56551153|ref|YP_161992.1| winged helix family two component transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] gi|241761507|ref|ZP_04759595.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753198|ref|YP_003226091.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56542727|gb|AAV88881.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ZM4] gi|241374414|gb|EER63911.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552561|gb|ACV75507.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 225 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 87/161 (54%), Gaps = 8/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L R + ++P++ ++ S + D+G DD + KP E++AR+ A+ RR Sbjct: 63 LDRWRKEGREMPVLVLTARDSWSDKVAGLDAGADDYLTKPFQTEELIARLRALIRRASGN 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 +++ G +R+ + + GE L +E ++L YLM ++GK V++T++ IY Sbjct: 123 ASSELTAGDVRLDTRSGKVTLAGEPVKLTAQEYKLLSYLMHHKGKVVSRTEMIEHIYDQD 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + N +E ++++RK KLG D + + R LGY+++ Sbjct: 183 FDR--DSNTIEVFVTRIRK----KLGQDVITTIRGLGYALN 217 >gi|114562306|ref|YP_749819.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114333599|gb|ABI70981.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 219 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 105/220 (47%), Gaps = 14/220 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI---GKGEK 59 +L++D L+ G + G+ ++ S + + + ED SAI L G G Sbjct: 4 LLVEDNKLLAQGIVMSLAKSGIQVDHLAS--YNQAQIALENEDFSAIILDLSLPDGNGAD 61 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L+ R + +P+I ++ T L D G DD ++KP RE++AR+ AI RR Sbjct: 62 LLKQWR--KNGISLPIIVLTANTDFDTRLMCLDIGADDYLSKPFDVRELIARLKAIIRRQ 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + NN+ G + + + + E+ L RRE ++L + G+ + + Q+ Y Sbjct: 120 HGLDNNQFSYGALNIDFARCEVHFRDELVSLSRREYQLLLEFAQSAGRVLTRNQLEQLTY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G +DE V N +E HI LRKK +L + + R +GY Sbjct: 180 G-WDE-VGSNSIEVHIHHLRKKTATEL----IKTVRGIGY 213 >gi|299134363|ref|ZP_07027556.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298591110|gb|EFI51312.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 233 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 4/148 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL+ R+ + + P++ +S ++ + G DD + KP H E++AR+ AI Sbjct: 59 GYEVLKQLRVSKI--KTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIV 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + +TG + V D + EV G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHAQSVIQTGDLIVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203 +YG DE E +++ I KLRKKL N Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLAN 203 >gi|297159980|gb|ADI09692.1| two component transcriptional regulator, winged helix family protein [Streptomyces bingchenggensis BCW-1] Length = 250 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 4/147 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ RI+R SQVP++ ++ + + L D G DD + KP RE+ ARV A+ RR + Sbjct: 62 LDVCRILRTDSQVPILLLTARATEEDMLLGLDLGADDYMTKPYSPRELTARVRALLRRSR 121 Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 G + + + + + GE+ L +E IL L A G+ + QI + Sbjct: 122 AITGEPTLIRAGALEIDTACFEVRLAGELIALTGKEFAILALLAAEPGRAFTRAQIIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 +G F++ V E V++H+ LR+KL + Sbjct: 182 FG-FEQNVLERTVDAHVMNLRRKLEQR 207 >gi|73667430|ref|YP_303446.1| response regulator receiver: C terminal [Ehrlichia canis str. Jake] gi|72394571|gb|AAZ68848.1| Response regulator receiver: C terminal [Ehrlichia canis str. Jake] Length = 266 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130 +VP++ +S S+ + G DD V KP H E+LAR+ AI RR + + G Sbjct: 75 KVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAIVRRTRGHPESIVRVGN 134 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I + D + E GE+ L ++E ++E L + G + K S +Y DE ++ ++ Sbjct: 135 IAINLDHKCVECNGEIVHLTKKEYGMIELLSSRLGTVLTKEMFLSHLYRELDEPSDDKII 194 Query: 191 ESHISKLRKKLR 202 + + KLRKKL+ Sbjct: 195 DVFMCKLRKKLK 206 >gi|284992967|ref|YP_003411521.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066212|gb|ADB77150.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 226 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 14/169 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R+ S VP+I ++ + + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQLRSRSSVPIIMLTAKDAEVDKVVGLELGADDYVTKPYSARELVARIRAVLRRRGD 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + E GP+R+ + V GE LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 VEALVESALEAGPVRMDVERHVVSVDGEPVALPLKEFDLLELLLRNAGRVLTRVQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 +G D + ++ H+ K+LR K+ DP + K R LGY ++ Sbjct: 182 WG-SDYVGDTKTLDVHV----KRLRAKIEPDPANPKYLVTVRGLGYKLE 225 >gi|86751020|ref|YP_487516.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|91978137|ref|YP_570796.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|86574048|gb|ABD08605.1| two component transcriptional regulator, winged helix family / cell cycle transcriptional regulator CtrA [Rhodopseudomonas palustris HaA2] gi|91684593|gb|ABE40895.1| cell cycle transcriptional regulator CtrA [Rhodopseudomonas palustris BisB5] Length = 233 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 + P++ +S ++ + G DD + KP H E++AR+ AI RR K + + +TG Sbjct: 72 KTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSKGHAQSVIQTGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V D + EV G+ L +E ++LE L +G + K + +YG DE E ++ Sbjct: 132 LVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190 Query: 191 ESHISKLRKKLRN 203 + I KLRKKL N Sbjct: 191 DVFICKLRKKLAN 203 >gi|323127354|gb|ADX24651.1| transcriptional regulatory protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 224 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 2/148 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGP 130 ++P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K ++ G Sbjct: 72 KIPVLIMTAKESLDDKGQGFELGADDYLTKPFYLEELKMRIQALLKRTGKFTDKNLAFGN 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V ++ +V G L +E +L YL+ N+ + KTQIF ++G FD +VV Sbjct: 132 VVVDLGQKEVQVDGRPIELLGKEFDLLVYLLQNQNVILPKTQIFDRLWG-FDSDTTISVV 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E ++SK+RKKL+ D + + R +GY Sbjct: 191 EVYVSKIRKKLKGTDFVDKLQTLRSVGY 218 >gi|238762221|ref|ZP_04623193.1| Two-component response regulator of virulence determinant [Yersinia kristensenii ATCC 33638] gi|238699568|gb|EEP92313.1| Two-component response regulator of virulence determinant [Yersinia kristensenii ATCC 33638] Length = 223 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 114/224 (50%), Gaps = 7/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G ++ ++ E + +LQ A D++ I+ L GE L Sbjct: 4 LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHA-PDIAIIDLGL--PGEDGL 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L R R+H + +P++ ++ S Q + ++G DD V KP H E++AR+ A+ RR + Sbjct: 61 SLIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNI 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ E P ++ R+ V + L E I+E L+ N GK V+K + +Y Sbjct: 121 GLASQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E E + ++ + +LRKK++ K + + + R GY D N Sbjct: 181 -DAELRESHTIDVLMGRLRKKMQAKHEGEVITTIRGQGYRFDAN 223 >gi|167578439|ref|ZP_02371313.1| DNA-binding response regulator TctD [Burkholderia thailandensis TXDOH] gi|167616577|ref|ZP_02385208.1| DNA-binding response regulator TctD [Burkholderia thailandensis Bt4] gi|257143082|ref|ZP_05591344.1| DNA-binding response regulator TctD [Burkholderia thailandensis E264] Length = 223 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/163 (33%), Positives = 87/163 (53%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 60 LEVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L + R E GP+ S R + + L RER +LE L+ G+ + K + I+ Sbjct: 120 LGHDHVRVECGPLEFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LRKKL G V + R LGY ++ Sbjct: 180 GL-DESVNADAIEIYVHRLRKKLEGS-GVAIV-TLRGLGYLLE 219 >gi|152988150|ref|YP_001350819.1| DNA-binding response regulator [Pseudomonas aeruginosa PA7] gi|150963308|gb|ABR85333.1| DNA-binding response regulator [Pseudomonas aeruginosa PA7] Length = 221 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 13/166 (7%) Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +R Q+ P++ ++ + + DSG DD + KP E+ ARV A+ RR Sbjct: 60 LDILRNLRHQGQLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRR- 118 Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + RA G +R+ + G+ L RE +L L+ N GK +++ Q+ Sbjct: 119 --TTGRALPQLVHGALRLDPATHQVTLAGQAVELAPREYALLRLLLENSGKVLSRNQLEQ 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++YG + VE N +E H+ LR+KL N+L + + R +GY ID Sbjct: 177 SLYG-WSGDVESNAIEVHVHHLRRKLGNQL----IRTVRGIGYGID 217 >gi|329120052|ref|ZP_08248722.1| two component response regulator [Neisseria bacilliformis ATCC BAA-1200] gi|327463583|gb|EGF09901.1| two component response regulator [Neisseria bacilliformis ATCC BAA-1200] Length = 220 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 12/153 (7%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG-- 129 +P++ ++ +L L + G DD + KP E+ AR+ + RR + RA++G Sbjct: 72 NLPVLILTARDALPDRLAGLNGGADDYLCKPFALEELAARLNVLVRRHR---GRADSGLK 128 Query: 130 --PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 + + + + + GE L RE R+LE L++N V++ QI +YG +D+ V+ Sbjct: 129 FGRLTLDTAAQTASLGGEPLDLTAREWRLLEMLVSNPKHIVSRAQIEDKLYG-WDQEVDS 187 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N VE HI LRK K+G + +KR LGY + Sbjct: 188 NAVEVHIHHLRK----KIGASVIKTKRGLGYQL 216 >gi|319403885|emb|CBI77471.1| two-component system regulatory protein [Bartonella rochalimae ATCC BAA-1498] Length = 222 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 8/131 (6%) Query: 92 DSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 D+G DD V KP H E++AR+ A+ RR + N G + + + + G++ L Sbjct: 92 DAGADDYVVKPFHLEEVMARLRALIRRSTGHATNTLSCGEVLLDTKTSRVFIDGQLIKLT 151 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209 E R+L YLM + K V+KT++ +Y FD+ + N +E + +LRK KLG D Sbjct: 152 SYEFRLLSYLMHHSDKVVSKTELIEHLYDQDFDK--DSNTIEVFVRRLRK----KLGVDS 205 Query: 210 VDSKRFLGYSI 220 +++ R LGY I Sbjct: 206 IETVRGLGYRI 216 >gi|291302794|ref|YP_003514072.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572014|gb|ADD44979.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 230 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 14/149 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ R++R+ SQVP++ ++ T L G DD + KP RE+ ARV A+ RR Sbjct: 65 MDVCRVLRSDSQVPILVLTARDDEDTLLQGLQLGADDYMTKPFSPRELAARVRALLRR-- 122 Query: 121 VSNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 +R E+GP VF GR V GE + RE +L L A G+ ++ Sbjct: 123 ---SRPESGPPTVFQVGRLTVDTGRVRVSVDGEPVSVTAREFAVLAALAAEPGRVFSRLD 179 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I +G FD V V++HI+ LR+K+ Sbjct: 180 IVHRAFG-FDSHVSPRTVDAHIANLRRKI 207 >gi|92118832|ref|YP_578561.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91801726|gb|ABE64101.1| cell cycle transcriptional regulator CtrA [Nitrobacter hamburgensis X14] Length = 233 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 + P++ +S ++ + G DD + KP H E++AR+ AI RR K + + +TG Sbjct: 72 KTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSKGHAQSVIQTGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V D + EV G+ L +E ++LE L +G + K + +YG DE E ++ Sbjct: 132 LVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190 Query: 191 ESHISKLRKKLRN 203 + I KLRKKL N Sbjct: 191 DVFICKLRKKLAN 203 >gi|39934702|ref|NP_946978.1| two-component cell cycle transcriptional regulatorCtrA [Rhodopseudomonas palustris CGA009] gi|192290218|ref|YP_001990823.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|316935200|ref|YP_004110182.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|39648552|emb|CAE27073.1| two-component cell cycle transcriptional regulator ctrA, winged helix family [Rhodopseudomonas palustris CGA009] gi|192283967|gb|ACF00348.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|315602914|gb|ADU45449.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 233 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 + P++ +S ++ + G DD + KP H E++AR+ AI RR K + + +TG Sbjct: 72 KTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSKGHAQSVIQTGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V D + EV G+ L +E ++LE L +G + K + +YG DE E ++ Sbjct: 132 LVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190 Query: 191 ESHISKLRKKLRN 203 + I KLRKKL N Sbjct: 191 DVFICKLRKKLAN 203 >gi|209886225|ref|YP_002290082.1| cell cycle transcriptional regulator CtrA [Oligotropha carboxidovorans OM5] gi|209874421|gb|ACI94217.1| cell cycle transcriptional regulator CtrA [Oligotropha carboxidovorans OM5] Length = 233 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 4/148 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL+ R+ + + P++ +S ++ + G DD + KP H E++AR+ AI Sbjct: 59 GYEVLKQLRVSKI--KTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIV 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + +TG + V D + EV G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHAQSVIQTGDLIVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203 +YG DE E +++ I KLRKKL N Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLAN 203 >gi|134103391|ref|YP_001109052.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291004390|ref|ZP_06562363.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916014|emb|CAM06127.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 226 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 17/207 (8%) Query: 27 EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + +E L+ R + L+ G ++ + +R S VP+I ++ S Sbjct: 24 EGFTAAVATTGQEALEEFDRNGADIVLLDLMLPGMSGTDVCKQLRQRSAVPVIMVTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR----AETGPIRVFSDGRD 139 + + G DD V KP RE++ARV A+ RR + + E GP+R+ + Sbjct: 84 EIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGEAEDMLPQVLEAGPVRMDVERHV 143 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 V GE LP +E +LEYL+ N G+ + + Q+ ++G D + ++ H+ K Sbjct: 144 VTVSGEEVSLPLKEFDLLEYLLRNVGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV----K 198 Query: 200 KLRNKLGFDPVDSK-----RFLGYSID 221 +LR+KL DP + + R LGY + Sbjct: 199 RLRSKLEPDPAEPRYLVTVRGLGYKFE 225 >gi|28493014|ref|NP_787175.1| two-component system response regulator [Tropheryma whipplei str. Twist] gi|28476054|gb|AAO44144.1| two-component system response regulator [Tropheryma whipplei str. Twist] Length = 251 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 3/156 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ A + P+I +S S + + G DD V KP EILARVAAI RR K+ + Sbjct: 92 RLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKIDDV 151 Query: 125 RAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 A G + + + + ++G + L E ++L Y M N + ++K+QI ++ +D Sbjct: 152 DATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD-YD 210 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + ++VES+IS +R+KL + +KR GY Sbjct: 211 FDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGY 246 >gi|188527213|ref|YP_001909900.1| putative transcriptional regulator [Helicobacter pylori Shi470] gi|188143453|gb|ACD47870.1| putative transcriptional regulator [Helicobacter pylori Shi470] gi|308063265|gb|ADO05152.1| putative transcriptional regulator [Helicobacter pylori Sat464] Length = 223 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/231 (29%), Positives = 113/231 (48%), Gaps = 32/231 (13%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55 M VL+ ++ V G I + G++ +GF SLE E+L D+ + ++ Sbjct: 1 MRVLLIEKNSVLGGEI----EKGLNAKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 + + RI HS + ++ SD P+ + + F+ G DD + KP +R I A VA I Sbjct: 52 DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARI 109 Query: 116 YRRLKV-SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RL+ +N E G + ++ GR+ EV+G+ F +L +L +R + Sbjct: 110 EARLRFWGSNVIEIGDLIISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQI 162 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+K Q+ AI+ E V NV+E I+++R+K+ LG V++ R GY Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 212 >gi|149203784|ref|ZP_01880753.1| two-component response regulator [Roseovarius sp. TM1035] gi|149142901|gb|EDM30943.1| two-component response regulator [Roseovarius sp. TM1035] Length = 223 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L + +R A + P++ ++ S+ + ++G DD + KP E+ ARVAA+ RR Sbjct: 60 LTLVKTLRGAGNHTPVLFLTSLGSVDERVSGLNAGADDYLVKPFAFGELSARVAALARRP 119 Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 GP+ + R +G+ L RE ILE+LM +G+ +T + AI Sbjct: 120 HALEQETVLRAGPLEMDLIARKVTREGQEIDLLPREFAILEHLMRRKGRVQTRTMLLEAI 179 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + FD NVVE+HIS+LR K+ + + + R GY ID Sbjct: 180 WDISFDPMT--NVVETHISRLRAKVDKPFTTELIKTVRGAGYRID 222 >gi|134279196|ref|ZP_01765909.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 305] gi|134249615|gb|EBA49696.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 305] Length = 252 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 78/143 (54%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L++ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 89 LDVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRS 148 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L + R E GP+ S R + + L RER +LE L+ G+ + K + I+ Sbjct: 149 LGHEHGRVECGPLAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIF 208 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 GL DE+V + VE ++ +LRKKL Sbjct: 209 GL-DESVNADAVEIYVHRLRKKL 230 >gi|42520575|ref|NP_966490.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410314|gb|AAS14424.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of Drosophila melanogaster] Length = 256 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 1/140 (0%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A +VP++ +S ++ G DD + KP H E+LAR+ AI RR K Sbjct: 67 LLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAIVRRTKGH 126 Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G I + D R EV+G+ L +E ++E L +G + K + +Y Sbjct: 127 PESVIKIGNININFDHRVVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFLNHLYNGL 186 Query: 182 DEAVEENVVESHISKLRKKL 201 DE + +V+ + KLRKKL Sbjct: 187 DEPSDNKIVDVFMCKLRKKL 206 >gi|319408928|emb|CBI82585.1| cell cycle transcriptional regulator CtrA [Bartonella schoenbuchensis R1] Length = 233 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 15/188 (7%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74 YI G++GV L +++ L D+S + + L L +I + P Sbjct: 28 YITDLGEEGVDLGKL--YDYDIILLDLNLPDMSGYDVL------RTLRLAKI-----KTP 74 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRV 133 ++ +S S++ + F G DD + KP H E++AR+ A+ RR K + + TG + V Sbjct: 75 VLILSGMSSIEDKVRGFGFGADDYMTKPFHKEELIARIHAVVRRSKGHAQSVIVTGDLTV 134 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D + E+ G L +E ++LE L +G + K + +YG DE E +++ Sbjct: 135 NLDNKTVEIAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKIIDVF 193 Query: 194 ISKLRKKL 201 I KLRKKL Sbjct: 194 ICKLRKKL 201 >gi|331005798|ref|ZP_08329157.1| Two-component system regulatory protein [gamma proteobacterium IMCC1989] gi|330420435|gb|EGG94742.1| Two-component system regulatory protein [gamma proteobacterium IMCC1989] Length = 251 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 88/166 (53%), Gaps = 5/166 (3%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +EL + +R H + P++ ++ S Q + ++G DD + KP H+ E+LAR+ A+ RR Sbjct: 60 IELIKQLRQHKKDFPVLILTARDSWQDKVIGLEAGADDYLAKPFHNEELLARLNALTRRS 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K +++ G I + + + + + L + E LEYL N+ + ++KT++ +Y Sbjct: 120 KGLASPEIHIGEILINTAKKLVSINNQDITLTQYEYNTLEYLALNKARVISKTELTEHLY 179 Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 FD ++ NV+E I +LRKKL P+ + R GY + N Sbjct: 180 DQDFD--LDSNVIEVLIGRLRKKLDPNNIHKPIVTHRGQGYRLTEN 223 >gi|325661991|ref|ZP_08150610.1| hypothetical protein HMPREF0490_01348 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471654|gb|EGC74873.1| hypothetical protein HMPREF0490_01348 [Lachnospiraceae bacterium 4_1_37FAA] Length = 224 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 92/171 (53%), Gaps = 2/171 (1%) Query: 52 FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 ++ K + + L I + S++P++ ++ + ++ D+G +D + KP H +E+LAR Sbjct: 52 IMMPKKDGLTVLKEIRKKGSKIPVLLLTAKGEVDDKVEGLDAGANDYLTKPFHAKELLAR 111 Query: 112 VAAIYR-RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + A+ R +++ +++ + G + + + L +E +++E+LM+N G ++ Sbjct: 112 LRAMTRVQMESEDSQLKAGNVTLDRATFELTTPKGSIRLANKEYQMMEFLMSNPGHLISS 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + F I+G +D E NVV ++S LRKKL + + + R GYS++ Sbjct: 172 ERFFEKIWG-YDSEAELNVVWVYLSNLRKKLSSLDADIQIRATRNAGYSLE 221 >gi|304393592|ref|ZP_07375520.1| two component transcriptional regulator [Ahrensia sp. R2A130] gi|303294599|gb|EFL88971.1| two component transcriptional regulator [Ahrensia sp. R2A130] Length = 216 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 12/167 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VLE R R +P++ ++ + D+G DD V KP H E+LAR+ A+ Sbjct: 59 GISVLEKWR--RGGRSMPVLLLTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARLRALI 116 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR ++ AE +V D R V G L E R+L YLM ++G+ V++T++ Sbjct: 117 RR-AAGHSSAEIEIGKVLLDTRQSRVFMDGTPVKLTSHEFRLLSYLMHHKGEIVSRTELI 175 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y FD+ + N +E + +LRKKL + D +++ R LGY + Sbjct: 176 EHLYDQDFDK--DSNTIEVFVGRLRKKLHS----DVIETVRGLGYRV 216 >gi|239637826|ref|ZP_04678788.1| response regulator protein [Staphylococcus warneri L37603] gi|239596584|gb|EEQ79119.1| response regulator protein [Staphylococcus warneri L37603] Length = 221 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 82/158 (51%), Gaps = 6/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S VP+I IS + G DD + KP + +A+V A+ RR L VSN Sbjct: 66 IRKISNVPIIFISSRTDNMDQIMAIQMGGDDFIEKPFNLSLTVAKVQALLRRTYDLAVSN 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N ++ +D QGE+ L E +I++ L N GK V +T + + + Sbjct: 126 NELNVKGCQLIADEAKLMFQGELTQLSLTELQIIKLLFQNEGKFVNRTALIEKCWE-SEN 184 Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 +++N + ++++LRKKL N++G D +++K+ +GY + Sbjct: 185 YIDDNTLAVNMTRLRKKL-NQIGLTDFIETKKNVGYRV 221 >gi|227874456|ref|ZP_03992632.1| response regulator [Oribacterium sinus F0268] gi|227839684|gb|EEJ50138.1| response regulator [Oribacterium sinus F0268] Length = 224 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 74/141 (52%), Gaps = 2/141 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 + IR HS+VP+I ++ L FD G D+ ++KP + ++ARV A+ RR V Sbjct: 68 KTIREHSKVPVIMLTARSEENDELKGFDYGADEYISKPFSPKILVARVEALLRRSGVQKE 127 Query: 125 R-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E G I + V G+ L +E +L+Y + N+G +++ +I + ++ +D Sbjct: 128 ELLEVGGIVIDEAAHSVTVDGKPIELSFKEYELLQYFVENKGIALSREKILNNVWN-YDY 186 Query: 184 AVEENVVESHISKLRKKLRNK 204 + +++H+ KLR KL +K Sbjct: 187 FGDARTIDTHVKKLRAKLMDK 207 >gi|294085303|ref|YP_003552063.1| response regulator protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664878|gb|ADE39979.1| response regulator protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 221 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 1/134 (0%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R + P++ ++ + Q + D+G DD + KP E+ ARV A+ RR + +N + Sbjct: 68 RDNVTTPVLILTARDTTQERIIGLDTGADDYLVKPFEMDELDARVRALLRRQRNNNQHEQ 127 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + G +G+ LPRRE I E L G+ V+K + +YG+ + V E Sbjct: 128 IGKLVFDRRGHSVSFEGKDLGLPRREISIFECLFDRSGRFVSKANLLDYVYGIGAD-VNE 186 Query: 188 NVVESHISKLRKKL 201 +V+E ++S+LRK+L Sbjct: 187 SVIEVYVSRLRKRL 200 >gi|49187888|ref|YP_031141.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49181815|gb|AAT57191.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] Length = 221 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 84/163 (51%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV A+ RR Sbjct: 63 ICKIMRGQSDVPIIMLTGSHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 122 Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + + + S V G L +E I+ L+ NRGK ++++ + + ++ Sbjct: 123 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ + V+++HI LRK KLG + + + +GY I+ Sbjct: 183 G-YEHYGDVRVIDTHIKNLRK----KLGIPYIKTVKGIGYKIE 220 >gi|306823610|ref|ZP_07456985.1| response regulator [Bifidobacterium dentium ATCC 27679] gi|309802985|ref|ZP_07697086.1| sensory transduction protein RegX3 [Bifidobacterium dentium JCVIHMP022] gi|304553317|gb|EFM41229.1| response regulator [Bifidobacterium dentium ATCC 27679] gi|308220452|gb|EFO76763.1| sensory transduction protein RegX3 [Bifidobacterium dentium JCVIHMP022] Length = 234 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 19/173 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L R IR S+VP+I ++ + + + G DD V KP RE+LARV A+ RR ++ Sbjct: 63 LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARVRAVLRRNQMV 122 Query: 122 --SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S++ ++ G I + + V+GE P +E +LEYLM N+G+ + + Q+ Sbjct: 123 AESDSASDDDIPLVCGDISMKIGQHEVSVRGENVFFPLKEFELLEYLMQNKGRVMTRHQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 I+G D + ++ H+ K++R+K+ DP K R LGY ID Sbjct: 183 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 230 >gi|228899749|ref|ZP_04063996.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 4222] gi|228859863|gb|EEN04276.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 4222] Length = 214 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 21/170 (12%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ ++IR+ S +P+I ++ Q + FD G+DD + KP ++ RV A+ RR Sbjct: 56 FEVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRR-- 113 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKT 171 SNN++ T VF R+ V G+ + PL +E IL+ L+ N K + + Sbjct: 114 -SNNQS-TDNHFVF---RELHVDGDAYKVYVNKVEVPLTTKEFEILQLLLRNEKKVLTRD 168 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I I+G ++ A + ++++H+ +RK KL + + + +GY ID Sbjct: 169 NIVEKIWG-YEYAGDTRMIDTHMKNIRK----KLDIPYIKTVKGIGYKID 213 >gi|90425706|ref|YP_534076.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90107720|gb|ABD89757.1| two component transcriptional regulator, winged helix family / cell cycle transcriptional regulator CtrA [Rhodopseudomonas palustris BisB18] Length = 233 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 + P++ +S ++ + G DD + KP H E++AR+ AI RR K + + +TG Sbjct: 72 KTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSKGHAQSVIQTGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V D + EV G+ L +E ++LE L +G + K + +YG DE E ++ Sbjct: 132 LVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190 Query: 191 ESHISKLRKKLRN 203 + I KLRKKL N Sbjct: 191 DVFICKLRKKLAN 203 >gi|75761320|ref|ZP_00741297.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491192|gb|EAO54431.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 228 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 21/170 (12%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ ++IR+ S +P+I ++ Q + FD G+DD + KP ++ RV A+ RR Sbjct: 70 FEVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRR-- 127 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKT 171 SNN++ T VF R+ V G+ + PL +E IL+ L+ N K + + Sbjct: 128 -SNNQS-TDNHFVF---RELHVDGDAYKVYVNKVEVPLTTKEFEILQLLLRNEKKVLTRD 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I I+G ++ A + ++++H+ +RK KL + + + +GY ID Sbjct: 183 NIVEKIWG-YEYAGDTRMIDTHMKNIRK----KLDIPYIKTVKGIGYKID 227 >gi|116669289|ref|YP_830222.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116609398|gb|ABK02122.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 226 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 14/174 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ E+ R +R S VP+I ++ + + + G DD V KP RE++ARV A+ Sbjct: 57 GQSGTEVCRQLRQRSSVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVL 116 Query: 117 RRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR ++ N + GP+R+ + V GE LP +E +LE L+ N G+ + + Q Sbjct: 117 RRQGEPEELITNTVQAGPVRMDVERHVVSVDGEQVSLPLKEFELLEMLLRNSGRVLTRGQ 176 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 + ++G D + ++ H+ K+LR+K+ DP + R LGY + Sbjct: 177 LIDRVWG-SDYVGDTKTLDVHV----KRLRSKIEPDPSAPRYLVTVRGLGYKFE 225 >gi|320532510|ref|ZP_08033327.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135272|gb|EFW27403.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 243 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 28/220 (12%) Query: 23 GVSLEGFNSLEFE------EWLQSSARED-VSAIEAFLIGKGEKVLELPRI--------I 67 G+ +GF +E E E ++S R V I+ L+ L LPR+ I Sbjct: 26 GLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLD-----LMLPRLDGTEVCTRI 80 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R S VP+I ++ + + + G DD V KP +RE+LAR+ A+ RR + + E Sbjct: 81 RRSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKAVLRRSRDTGPELE 140 Query: 128 ----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 GP+R+ + + V GEV +P RE +LE + N G+ + ++QI ++G + Sbjct: 141 PVLVAGPVRMDVERHEVRVDGEVVAIPLREFELLELFLRNPGRVLTRSQIIERLWG-PEY 199 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGYSID 221 + ++ H+ +LR ++ PV + R LGY +D Sbjct: 200 GGDTKTLDVHVKRLRGRIEAD-ASKPVLITTVRGLGYRLD 238 >gi|268611303|ref|ZP_06145030.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 228 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 82/168 (48%), Gaps = 12/168 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 E+ R +R S VP+I S + + FD G DD + KP +E+L+RV A+ RR Sbjct: 63 FEICRQLRKVSDVPVIFASARTAEDDRIRSFDIGGDDYLPKPYSMKELLSRVNALIRRAY 122 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + G I + + R GE L +RE +L YL NR + K ++ S ++ Sbjct: 123 GQTEDKQLSFGGIVINTATRTVTRNGEKVMLAQREFDLLVYLCRNRNTAIPKEKLLSEVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221 G F E VE + + HI LR+KL + DP K LGY ++ Sbjct: 183 GAFSE-VEPSTLTVHIRWLREKLED----DPASPKYIKTVWRLGYMLE 225 >gi|166032244|ref|ZP_02235073.1| hypothetical protein DORFOR_01947 [Dorea formicigenerans ATCC 27755] gi|226325641|ref|ZP_03801159.1| hypothetical protein COPCOM_03454 [Coprococcus comes ATCC 27758] gi|166027967|gb|EDR46724.1| hypothetical protein DORFOR_01947 [Dorea formicigenerans ATCC 27755] gi|225205765|gb|EEG88119.1| hypothetical protein COPCOM_03454 [Coprococcus comes ATCC 27758] Length = 224 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 5/159 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 L+ R++RA LI ++ ++ +D+G DD + KP ++++V A+ RRL Sbjct: 61 LDFGRMVRAGGDTYLIYLTALDQEIDIVNGYDTGADDYITKPFSLMALVSKVNALMRRLS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 KV +G I V E L ++E +L YL N G+ V+K I ++ Sbjct: 121 KVQAQIMSSGEITVHMKTMQVYKGDEPVTLSKKEFSLLLYLWENAGQIVSKESILEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + V++N V +IS +L+NKLG + + + R LGY Sbjct: 181 IDGQFVDDNTVTVNIS----RLKNKLGTEEIANVRGLGY 215 >gi|152998159|ref|YP_001342994.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150839083|gb|ABR73059.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 223 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 80/148 (54%), Gaps = 4/148 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G ++L+ R + HS P+I ++ ++ ++ D G DD + KP+ E+ AR A+ Sbjct: 59 GNQILQTLR--KKHSNTPVIVLTARDGIKDRIELLDLGADDYMTKPVDFGELEARCRALL 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + + N E G + + V G + L +RE R+LE +++ G+ ++K + Sbjct: 117 RRSQGQAQNTIEYGNVSLNLQACSVTVDGNLIDLKQREFRLLEVFISHTGRVLSKEALIE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203 IY F+E +V+E ++++LRK L++ Sbjct: 177 HIYN-FNENPNSSVIEIYVARLRKSLQD 203 >gi|85713634|ref|ZP_01044624.1| Transcriptional regulatory protein [Nitrobacter sp. Nb-311A] gi|85699538|gb|EAQ37405.1| Transcriptional regulatory protein [Nitrobacter sp. Nb-311A] Length = 233 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 + P++ +S ++ + G DD + KP H E++AR+ AI RR K + + +TG Sbjct: 72 KTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSKGHAQSVIQTGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V D + EV G+ L +E ++LE L +G + K + +YG DE E ++ Sbjct: 132 LVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190 Query: 191 ESHISKLRKKLRN 203 + I KLRKKL N Sbjct: 191 DVFICKLRKKLAN 203 >gi|186685384|ref|YP_001868580.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467836|gb|ACC83637.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 227 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 17/171 (9%) Query: 57 GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ L + +++R + P+I ++ L L + G DD + KP E+ AR+ A+ Sbjct: 56 GKDGLSILKLLRGQGRNAPVILLTARNELDDRLAGLNLGADDYIAKPFFVEELAARIHAV 115 Query: 116 YRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR VSN N GPIR+ R+ + L RE +LEYLM + G+ +TQI Sbjct: 116 VRR-SVSNRQNILSVGPIRLDRITREVTCDRQAIELTSREFNLLEYLMRSPGRVFTRTQI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD------SKRFLGY 218 ++G +D NVV+ I ++RKK+ DP+D S R +GY Sbjct: 175 LEHVWG-YDFNPNTNVVDVCIQRIRKKI------DPIDEPVWIESIRGVGY 218 >gi|222149588|ref|YP_002550545.1| two component response regulator [Agrobacterium vitis S4] gi|221736570|gb|ACM37533.1| two component response regulator [Agrobacterium vitis S4] Length = 233 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 9/150 (6%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + + P++ +S ++ + G DD + KP H E++AR+ AI RR Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRR-- 118 Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S A+ TG + V D + EV G+ L +E ++LE L +G + K + Sbjct: 119 -SKGHAQSIIITGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNH 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG 206 +YG DE E +++ I KLRKKL N G Sbjct: 178 LYGGMDEP-ELKIIDVFICKLRKKLANAAG 206 >gi|27377311|ref|NP_768840.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27350454|dbj|BAC47465.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 233 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 + P++ +S ++ + G DD + KP H E++AR+ AI RR K + + +TG Sbjct: 72 KTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSKGHAQSVIQTGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V D + EV G+ L +E ++LE L +G + K + +YG DE E ++ Sbjct: 132 LVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190 Query: 191 ESHISKLRKKLRN 203 + I KLRKKL N Sbjct: 191 DVFICKLRKKLAN 203 >gi|58696682|ref|ZP_00372233.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of Drosophila simulans] gi|225630493|ref|YP_002727284.1| two component transcriptional regulator [Wolbachia sp. wRi] gi|58537144|gb|EAL60252.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of Drosophila simulans] gi|225592474|gb|ACN95493.1| two component transcriptional regulator [Wolbachia sp. wRi] Length = 256 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 1/140 (0%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A +VP++ +S ++ G DD + KP H E+LAR+ AI RR K Sbjct: 67 LLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAIVRRTKGH 126 Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G I + D R EV+G+ L +E ++E L +G + K + +Y Sbjct: 127 PESVIKIGNININFDHRIVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFLNHLYNGL 186 Query: 182 DEAVEENVVESHISKLRKKL 201 DE + +V+ + KLRKKL Sbjct: 187 DEPSDNKIVDVFMCKLRKKL 206 >gi|329849938|ref|ZP_08264784.1| cell cycle transcriptional regulator ctrA [Asticcacaulis biprosthecum C19] gi|328841849|gb|EGF91419.1| cell cycle transcriptional regulator ctrA [Asticcacaulis biprosthecum C19] Length = 233 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 71/143 (49%), Gaps = 3/143 (2%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R P++ +S + T + G DD + KP H E++AR+ A+ RR Sbjct: 60 LEVLRQLRVGKVNTPVMILSGTSEIDTKVKTLGGGADDYMTKPFHKDELIARIHAVVRRS 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + + TG I V D + EV G L +E +LE L +G + K + +Y Sbjct: 120 KGHAQSIIRTGDIVVNLDAKTVEVSGNRVHLTGKEYEMLELLSLRKGTTLTKEMFLNHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G DE E +++ I KLRKKL Sbjct: 180 GGMDEP-ELKIIDVFICKLRKKL 201 >gi|300854728|ref|YP_003779712.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300434843|gb|ADK14610.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 228 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 85/164 (51%), Gaps = 5/164 (3%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+++L+ R + P++ ++ SL+ ++ F G DD ++KP H E+ R+ A+ Sbjct: 58 GDEILKSLR--KNGVSTPILLLTAKDSLEDKINGFKIGADDYISKPFHIEELKVRIEALL 115 Query: 117 RR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR ++ N + G +++ R+ + E L + ++EYL+ N+G + K QIF Sbjct: 116 RRSGALINENILKCGNLKIDIKIRELSINNEKVNLQAKLFDLMEYLINNKGTILTKEQIF 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G F+ N+VE ++ KLRK L + + R +GY Sbjct: 176 DRVWG-FESDTAINIVEVYMHKLRKTLVEHGCDGEIKTVRGIGY 218 >gi|289642155|ref|ZP_06474306.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289508001|gb|EFD28949.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 226 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 8/166 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRALRQRSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRGE 121 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R E GP+R+ + V G PLP +E +LE + N G+ + + Q+ + Sbjct: 122 IDERVTATLEAGPVRMDVERHVVTVAGASVPLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + G +P + + R LGY + Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRTKIEGEPG-NPRHLVTVRGLGYKFE 225 >gi|296268488|ref|YP_003651120.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091275|gb|ADG87227.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 229 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 14/195 (7%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 E L+ RE + L+ G E+ R +R S+VP+I ++ S + + G Sbjct: 36 EALEVFDREGADLVLLDLMLPGLPGTEVCRSLRQRSKVPVIMLTAKDSEIDKIVGLELGA 95 Query: 96 DDVVNKPIHHREILARVAAIYRRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPR 151 DD V KP RE++AR+ A+ RR + S++ GP+R+ D V+GE LP Sbjct: 96 DDYVTKPFSSRELVARIRAVLRRRGDAEEPSSSVLAAGPVRMDVDRHVVTVRGEKVQLPL 155 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 +E +LE L+ N G+ + + Q+ ++G D + ++ HI K+LR K+ DP Sbjct: 156 KEFELLEVLLRNAGRVLTRGQLIDRVWG-ADYVGDTKTLDVHI----KRLRAKIEPDPSK 210 Query: 212 SK-----RFLGYSID 221 + R LGY + Sbjct: 211 PRYILTVRGLGYKFE 225 >gi|257898553|ref|ZP_05678206.1| transcriptional regulator [Enterococcus faecium Com15] gi|257836465|gb|EEV61539.1| transcriptional regulator [Enterococcus faecium Com15] Length = 224 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 5/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ + Q P++ ++ SL+ ++ F+ G DD + KP + E++ RV A+ +R Sbjct: 63 LAKLRKEKIQTPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSLGL 122 Query: 123 NNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + D + EV + +V P+ +E +L Y + N+G + K QIF I+G Sbjct: 123 FDENILKYKDISCDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 FD VVE ++S LRK LR+ G D + + R +GY Sbjct: 182 FDSDTTITVVEVYMSNLRKHLRST-GLDKEIKTLRNVGY 219 >gi|75674723|ref|YP_317144.1| transcriptional regulatory protein [Nitrobacter winogradskyi Nb-255] gi|74419593|gb|ABA03792.1| cell cycle transcriptional regulator CtrA [Nitrobacter winogradskyi Nb-255] Length = 233 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 + P++ +S ++ + G DD + KP H E++AR+ AI RR K + + +TG Sbjct: 72 KTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSKGHAQSVIQTGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V D + EV G+ L +E ++LE L +G + K + +YG DE E ++ Sbjct: 132 LVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190 Query: 191 ESHISKLRKKLRN 203 + I KLRKKL N Sbjct: 191 DVFICKLRKKLAN 203 >gi|148257763|ref|YP_001242348.1| cell cycle transcriptional regulator CtrA [Bradyrhizobium sp. BTAi1] gi|146409936|gb|ABQ38442.1| cell cycle transcriptional regulator CtrA [Bradyrhizobium sp. BTAi1] Length = 233 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 + P++ +S ++ + G DD + KP H E++AR+ AI RR K + + +TG Sbjct: 72 KTPILILSGLAGIEDKVKGLGFGADDYMTKPFHKDELIARIHAIVRRSKGHAQSVIQTGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V D + EV G+ L +E ++LE L +G + K + +YG DE E ++ Sbjct: 132 LVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190 Query: 191 ESHISKLRKKLRN 203 + I KLRKKL N Sbjct: 191 DVFICKLRKKLAN 203 >gi|322834357|ref|YP_004214384.1| transcriptional regulator [Rahnella sp. Y9602] gi|321169558|gb|ADW75257.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 228 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 11/205 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGE 58 +LI+D ++ DG A G++ GF F + L A D + +A ++ G Sbjct: 3 ILLIEDDKMIGDGIKA-----GLAKLGFTLDWFTDGLTGKAALDSAPYDAVILDLSLPGM 57 Query: 59 KVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IY 116 ++L R R A P++ ++ +L+ + +G DD + KP E+ AR+ A I Sbjct: 58 DGMQLLREWRKAGRDTPVLILTARDALEQRVGGLQAGADDYLCKPFALVEVAARLQALIR 117 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR V + G + R + GE L RE +LE + N+G+ +A+T I Sbjct: 118 RRHGVITPKVTHGAVEFDPAARSVTLNGEAVTLTPREVTVLELFLRNKGRVLARTLIQEK 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 +Y DE V N VE HI LR KL Sbjct: 178 LYSWEDE-VSSNAVEVHIHHLRSKL 201 >gi|226949267|ref|YP_002804358.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226844404|gb|ACO87070.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 221 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 19/199 (9%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQ 85 +L A + + A+E F G + ++ LP+I IR S VP+I ++ + Sbjct: 27 YLVEVATDGLIAVEMFRRGNFDLIILDVMLPKIDGFVVCEIIRKESSVPIIMLTALGEEE 86 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEV 142 + F+ VDD + KP ++ RV A+ RR L+ +N+ I ++ V Sbjct: 87 DEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANGLEENNSTLTFEEITIYPSNYKTLV 146 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + L +E +ILE LM+N G+ ++ + + I+G +D + V+++HI K LR Sbjct: 147 NNKEIELTYKEFQILEILMSNVGRVFSRESLLNQIWG-YDYFGDTRVIDTHI----KNLR 201 Query: 203 NKLGFDPVDSKRFLGYSID 221 KL D + + R +GY I+ Sbjct: 202 QKLNIDYIKTIRGVGYKIE 220 >gi|83944020|ref|ZP_00956477.1| response regulator protein [Sulfitobacter sp. EE-36] gi|83845267|gb|EAP83147.1| response regulator protein [Sulfitobacter sp. EE-36] Length = 223 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 84/163 (51%), Gaps = 6/163 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ R P+I ++ + D+G DD + KP E+ AR+ A+ RR + Sbjct: 63 LSRLRRRGDGTPVILLTARAETSERVAGLDAGADDYLTKPFEMDELEARLRAMARRKNLE 122 Query: 123 -NNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R GP+ VF ++GE PR+E LE L+ RG+ V+K+Q+ + +YG Sbjct: 123 FAARDAIGPL-VFDRTNRQLLEGEQPLAFPRKELATLECLLERRGRIVSKSQLITHVYG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 A E++ +E H+S+LRK+L G + + R LGY ++ + Sbjct: 181 TGAAQEDSAIEPHVSRLRKRL-EPFGIR-IKAARGLGYMLEVD 221 >gi|115526264|ref|YP_783175.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520211|gb|ABJ08195.1| cell cycle transcriptional regulator CtrA / two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 233 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 + P++ +S ++ + G DD + KP H E++AR+ AI RR K + + +TG Sbjct: 72 KTPILILSGLAGIEDKVKGLGVGADDYMTKPFHKDELVARIHAIVRRSKGHAQSVIQTGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V D + EV G+ L +E ++LE L +G + K + +YG DE E ++ Sbjct: 132 LVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190 Query: 191 ESHISKLRKKLRN 203 + I KLRKKL N Sbjct: 191 DVFICKLRKKLAN 203 >gi|293570434|ref|ZP_06681489.1| transcriptional regulatory protein CiaR [Enterococcus faecium E980] gi|291609380|gb|EFF38647.1| transcriptional regulatory protein CiaR [Enterococcus faecium E980] Length = 224 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 5/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ + Q P++ ++ SL+ ++ F+ G DD + KP + E++ RV A+ +R Sbjct: 63 LAKLRKEKIQTPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSLGL 122 Query: 123 NNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + D + EV + +V P+ +E +L Y + N+G + K QIF I+G Sbjct: 123 FDENILKYKDISCDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 FD VVE ++S LRK LR+ G D + + R +GY Sbjct: 182 FDSDTTITVVEVYMSNLRKHLRST-GLDKEIKTLRNVGY 219 >gi|146338575|ref|YP_001203623.1| two-component cell cycle transcriptional regulator ctrA [Bradyrhizobium sp. ORS278] gi|146191381|emb|CAL75386.1| Two-component cell cycle transcriptional regulator ctrA [Bradyrhizobium sp. ORS278] Length = 233 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 + P++ +S ++ + G DD + KP H E++AR+ AI RR K + + +TG Sbjct: 72 KTPILILSGLAGIEDKVKGLGFGADDYMTKPFHKDELIARIHAIVRRSKGHAQSVIQTGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V D + EV G+ L +E ++LE L +G + K + +YG DE E ++ Sbjct: 132 LVVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190 Query: 191 ESHISKLRKKLRN 203 + I KLRKKL N Sbjct: 191 DVFICKLRKKLAN 203 >gi|19551649|ref|NP_599651.1| two-component system, response regulators [Corynebacterium glutamicum ATCC 13032] gi|62389304|ref|YP_224706.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|21323169|dbj|BAB97797.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41324638|emb|CAF19120.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 232 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 14/191 (7%) Query: 27 EGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF+++ + L +R ++ + L+ G ++ + +R+ S VP+I ++ S Sbjct: 24 EGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGTDVCKELRSVSTVPVIMVTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP----------IRV 133 + + G DD V KP RE++AR+ A+ RR V+ AE P +R+ Sbjct: 84 EIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGVTETEAEELPLDDQILEGGRVRM 143 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D V GE +P +E +LEYL+ N G+ + + Q+ I+G D + ++ H Sbjct: 144 DVDSHTVTVGGEPVSMPLKEFDLLEYLLRNAGRVLTRGQLIDRIWG-ADYVGDTKTLDVH 202 Query: 194 ISKLRKKLRNK 204 + +LR K+ + Sbjct: 203 VKRLRSKIEEE 213 >gi|153852896|ref|ZP_01994333.1| hypothetical protein DORLON_00315 [Dorea longicatena DSM 13814] gi|149754538|gb|EDM64469.1| hypothetical protein DORLON_00315 [Dorea longicatena DSM 13814] Length = 224 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 101/203 (49%), Gaps = 13/203 (6%) Query: 28 GFNSLEFEE---WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ---VPLIGISDY 81 GF + FE+ +L++ A E + ++ GE +EL R ++A + +P+I ++ Sbjct: 23 GFQARGFEDGSSFLEALALETPELVLLDIMLPGEDGMELLRKLKASKKTKDIPVIMVTAK 82 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VSNNRAETGPIRVFSDG 137 + + D+G DD V KP E+++R+ A+ RR S + E G IR+ Sbjct: 83 GAEYDKVKGLDAGADDYVTKPFGMMELISRIKAVLRRSAKGSVSSEDTFEIGEIRLDPKK 142 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 + V GEV L +E +L+ LM N + + Q+ I+G +D E V+ H+ L Sbjct: 143 HEVTVHGEVVNLTLKEYELLKRLMKNSNIVLTRDQLLEDIWG-YDFDGETRTVDVHVRTL 201 Query: 198 RKKLRNKLGFDPVDSKRFLGYSI 220 R+KL + + +++ R +GY + Sbjct: 202 RQKLGD--AGEQIETVRGVGYRM 222 >gi|255327015|ref|ZP_05368091.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] gi|255296232|gb|EET75573.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] Length = 233 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 106/212 (50%), Gaps = 15/212 (7%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L ++G+ A+F ++G S FE +++S+ D+ ++ L G +E+ + IR Sbjct: 26 LAQEGFNAVFCENG-------SRAFETFMRSTP--DLVLLDLML--PGMNGIEVCQQIRR 74 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 S VP+I ++ + + ++G DD + KP H E+LAR+ R + G Sbjct: 75 SSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRLRPRESRQLVVSIG 134 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I + DGR + P+ E +L L+ + G+ +++ ++ ++G D V +++ Sbjct: 135 DIVMDMDGRTVKYHSTEVPMTPLEFDLLAALVRHPGQALSRQELLDMVWGYTD--VSDSL 192 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 V H+ +LR K ++LG D + + R +GY I Sbjct: 193 VNVHVQRLRAKF-DELGADRFIQTVRGVGYKI 223 >gi|330504167|ref|YP_004381036.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] gi|328918453|gb|AEB59284.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] Length = 225 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 107/219 (48%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ A ++G ++ + E + S D++ ++ L G + Sbjct: 3 LLVVEDEALLRHHLFARLSENGHVVDAVRTAEEALYRAESFNHDLALVDLGLPGMSG--I 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R+ + P++ ++ + Q ++ G DD V KP E+ AR+ A+ RR Sbjct: 61 DLIRQLRSQDKSFPILILTARGNWQDKVEGLSCGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + E G + + + V + L E RILEYLM + + VAK ++ +Y Sbjct: 121 GFTKSTIEAGSLVLDLHRKQATVDEQSLQLTAYEYRILEYLMLHHQQVVAKERLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D+ + NV+E + +LR+KL LG +++ R GY Sbjct: 181 -GDDDRDPNVIEVLVGRLRRKLEAVLGGKSIETVRGQGY 218 >gi|222153107|ref|YP_002562284.1| response regulator protein [Streptococcus uberis 0140J] gi|222113920|emb|CAR42131.1| response regulator protein [Streptococcus uberis 0140J] Length = 224 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/134 (34%), Positives = 72/134 (53%), Gaps = 2/134 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K +NN G I+V +D V E L Sbjct: 91 FELGADDYLTKPFYLEELKMRIQALLKRSGKFNNNLIRYGNIQVDTDRNMVTVNQENIEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + K+QIF I+G FD +VVE +ISK+RKKL++ Sbjct: 151 LGKEYELLIYFLQNQNVILPKSQIFDRIWG-FDSDTTISVVEVYISKIRKKLKSTDFATN 209 Query: 210 VDSKRFLGYSIDWN 223 + + R +GY + N Sbjct: 210 LQTLRSVGYILKSN 223 >gi|270307586|ref|YP_003329644.1| DNA-binding response regulator, two-component system, OmpR family [Dehalococcoides sp. VS] gi|270153478|gb|ACZ61316.1| DNA-binding response regulator, two-component system, OmpR family [Dehalococcoides sp. VS] Length = 256 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 18/198 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY +DG+ G L + + ++ L G EL R+IR Sbjct: 49 LAKEGYTLECAEDGLKALGTYRL---------FKPSLVILDVML--PGIDGFELCRLIRT 97 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET- 128 S VP++ ++ S ++ ++G DD ++KP RE+LAR+ A+ RR + N++ ET Sbjct: 98 ESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQTQNSQTETT 157 Query: 129 -----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 G + +F + G +E + +++ NR + ++ Q+ ++G +D Sbjct: 158 GGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLEKVWG-YDY 216 Query: 184 AVEENVVESHISKLRKKL 201 V+ HIS LR+K+ Sbjct: 217 PGWTRTVDVHISWLRQKI 234 >gi|12002210|gb|AAG43239.1|AF123314_2 putative response regulator rr [Corynebacterium glutamicum] Length = 232 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 14/191 (7%) Query: 27 EGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF+++ + L +R ++ + L+ G ++ + +R+ S VP+I ++ S Sbjct: 24 EGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGTDVCKELRSVSTVPVIMVTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP----------IRV 133 + + G DD V KP RE++AR+ A+ RR V+ AE P +R+ Sbjct: 84 EIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGVTETEAEELPLDDEILEGGRVRM 143 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D V GE +P +E +LEYL+ N G+ + + Q+ I+G D + ++ H Sbjct: 144 DVDSHTVTVGGEPVSMPLKEFDLLEYLLRNAGRVLTRGQLIDRIWG-ADYVGDTKTLDVH 202 Query: 194 ISKLRKKLRNK 204 + +LR K+ + Sbjct: 203 VKRLRSKIEEE 213 >gi|257887434|ref|ZP_05667087.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257823488|gb|EEV50420.1| transcriptional regulator [Enterococcus faecium 1,141,733] Length = 224 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 5/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ + Q P++ ++ SL+ ++ F+ G DD + KP + E++ RV A+ +R Sbjct: 63 LAKLRKEKIQTPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSLGL 122 Query: 123 NNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + D + EV + +V P+ +E +L Y + N+G + K QIF I+G Sbjct: 123 FDENILKYKDISCDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 FD VVE ++S LRK LR+ G D + + R +GY Sbjct: 182 FDSDTTITVVEVYMSNLRKHLRST-GLDKEIKTLRNVGY 219 >gi|68537004|ref|YP_251709.1| two-component system response regulator TcsR8 [Corynebacterium jeikeium K411] gi|260579348|ref|ZP_05847230.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|68264603|emb|CAI38091.1| two-component system response regulator TcsR8 [Corynebacterium jeikeium K411] gi|258602477|gb|EEW15772.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 230 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 97/204 (47%), Gaps = 10/204 (4%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQT 86 E F + + L + A ED+ I L+ G E+ R +R S VP+I ++ S Sbjct: 27 EVFMAPDGPTALDTFAAEDIDIILLDLMLPGMSGTEVCRQLRQTSSVPVIMVTARDSEID 86 Query: 87 TLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR---DPE-- 141 + + G DD V KP RE++AR+ A+ RR A V + R D E Sbjct: 87 KVVGLELGADDYVTKPYFARELIARIRAVLRRGGEVEVEAPDDDGLVLQEDRVMMDVERH 146 Query: 142 ---VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 V G+ P+P +E +LEYLM N G+ + + Q+ ++G D + ++ HI +LR Sbjct: 147 IVTVDGQKVPMPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHIKRLR 205 Query: 199 KKL-RNKLGFDPVDSKRFLGYSID 221 K+ RN + + + R LGY + Sbjct: 206 SKIERNPSRPEILVTVRGLGYKFE 229 >gi|229119327|ref|ZP_04248628.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3] gi|228664089|gb|EEL19629.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3] Length = 214 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 13/166 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ ++IR+ S +P+I ++ Q + FD G+DD + KP ++ RV A+ RR Sbjct: 56 FEVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRR-- 113 Query: 121 VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 SNN++ + V D V PL +E IL+ L+ N K + + I Sbjct: 114 -SNNQSTDNHFVFKELHVDGDAYKVYVNRVDVPLTTKEFEILQLLLQNEKKVLTRENIVE 172 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G ++ A + ++++H+ +RK KL + + + +GY ID Sbjct: 173 KIWG-YEYAGDTRMIDTHMKNIRK----KLDIPYIKTVKGIGYKID 213 >gi|269120932|ref|YP_003309109.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] gi|268614810|gb|ACZ09178.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] Length = 223 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 11/164 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR S+VP+I ++ + + D G DD + KP + E++AR+ A+ RR K Sbjct: 62 IEVCKRIREFSEVPIIMLTAKDEISDKVVGLDYGADDYMTKPFSNEELIARIKALIRRTK 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIF 174 NN+ E V+ D + EVF L +RE +L+YL+ N+G +++ +I Sbjct: 122 KRNNQEEF----VYEDLKINYSTYEVFRGETLISLSKREFELLDYLVLNKGIVLSRDKIL 177 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G F+ +N+++ +I LR K+ + + R LG+ Sbjct: 178 ENVWG-FEYIGNDNILDLYIKYLRDKIDKPYERKFIQTVRGLGF 220 >gi|218893871|ref|YP_002442740.1| PmrA: two-component regulator system response regulator PmrA [Pseudomonas aeruginosa LESB58] gi|218774099|emb|CAW29915.1| PmrA: two-component regulator system response regulator PmrA [Pseudomonas aeruginosa LESB58] Length = 221 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 71/135 (52%), Gaps = 12/135 (8%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146 DSG DD + KP + E+ ARV A+ RR + RA G +R+ + G+ Sbjct: 91 LDSGADDYLTKPFYLDELQARVRALTRR---TTGRALPQLVHGELRLDPATHQVTLSGQA 147 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L RE +L L+ N GK +++ Q+ ++YG + VE N +E H+ LR+KL N+L Sbjct: 148 VELAPREYALLRLLLENSGKVLSRNQLEQSLYG-WSGDVESNAIEVHVHHLRRKLGNQL- 205 Query: 207 FDPVDSKRFLGYSID 221 + + R +GY ID Sbjct: 206 ---IRTVRGIGYGID 217 >gi|325663524|ref|ZP_08151934.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium 4_1_37FAA] gi|331087049|ref|ZP_08336123.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470423|gb|EGC73654.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium 4_1_37FAA] gi|330409329|gb|EGG88776.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 225 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 80/145 (55%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R HS+VP+I ++ + L F+ GVD+ ++KP + ++ARV AI RR V Sbjct: 65 QVCREVRMHSKVPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVEAILRRTNV 124 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + G I V + ++ G L +E +L Y + N+G +++ +I + ++ Sbjct: 125 FAADEVVDAGGISVDKAAHEVKIDGVPIDLSYKEFELLAYFIENQGIALSREKILNNVWN 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR KL +K Sbjct: 185 -YDYFGDARTIDTHVKKLRNKLGDK 208 >gi|254483612|ref|ZP_05096835.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] gi|214036121|gb|EEB76805.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] Length = 222 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 70/219 (31%), Positives = 106/219 (48%), Gaps = 19/219 (8%) Query: 16 IALFGDD---GVSLEGFNSLEFE--EWLQSS--AREDVSAIEAFLIGKGEKVLELP---- 64 I L DD G SLE LE +WL+S R + A L+ + E+P Sbjct: 7 ILLVEDDVQLGESLEAALRLEHYAVDWLRSGEPVRATIGATPYDLMILDLGLPEVPGIQV 66 Query: 65 -RIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121 R RA +P++ ++ +L +D DSG DD + KP E+ ARV + RR + Sbjct: 67 LRQTRADKHDIPVLLLTARNTLDDKVDGLDSGADDYLTKPFEIDELFARVRTLLRRRGEG 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + E I + R +GE+ L RE ILE L+ N G+ V++ ++ IY + Sbjct: 127 RSQQLEARGITIDPVDRLVIFEGEMLDLTAREYAILEILIRNAGRFVSRPRLEEGIYS-W 185 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E V N VE +IS+LRK + G D +++ R +GY I Sbjct: 186 GEEVGSNTVEVYISRLRK----RFGSDCIETMRGVGYRI 220 >gi|111220435|ref|YP_711229.1| two-component regulatory system response regulator [Frankia alni ACN14a] gi|111147967|emb|CAJ59633.1| response regulator in two-component regulatory system with PhoR, regulation of Pi uptake (OmpR family) [Frankia alni ACN14a] Length = 226 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 8/166 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRTLRTRSSVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRSE 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ + V G + LP +E +LE + N G+ + + Q+ + Sbjct: 122 TEEVAEATLEAGPVRMDVERHVVTVDGSMVTLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + G +P + + R LGY + Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRTKIEREPG-NPRHLVTVRGLGYKFE 225 >gi|94498224|ref|ZP_01304785.1| two-component response regulator [Sphingomonas sp. SKA58] gi|94422354|gb|EAT07394.1| two-component response regulator [Sphingomonas sp. SKA58] Length = 221 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 83/150 (55%), Gaps = 8/150 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIR 132 P++ ++ S + D+G DD + KP E++AR+ A+ RR +++ G +R Sbjct: 74 PVLVLTARDSWSDKVAGLDAGADDYLAKPFQSEELIARLRALIRRASGNASSELTAGDVR 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVE 191 + + ++G+ L +E ++L YL+ ++GK V++T++ IY FD + N +E Sbjct: 134 LDTRSGKVTLKGDPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQDFDR--DSNTIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++++RK KLG D + + R LGYS+D Sbjct: 192 VFVTRIRK----KLGADVITTIRGLGYSLD 217 >gi|27367654|ref|NP_763181.1| DNA-binding response regulator [Vibrio vulnificus CMCP6] gi|27359226|gb|AAO08171.1| DNA-binding response regulator [Vibrio vulnificus CMCP6] Length = 218 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 11/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60 +LI+D L+ + G +++ LE + S+ + ED +A+ L Sbjct: 3 LLLIEDDTLLGQSMVTSLSRHGYTVDW---LEKGSGVTSALKTEDFTAVILDLTLPDIDG 59 Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R IR+ +P++ ++ ++ + D G DD + KP E+LAR+ + RR Sbjct: 60 LDVLRNIRSAGFSLPVVILTARDDIKDRVQGLDRGADDYLGKPFALEELLARLRVVIRRQ 119 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S E G + + + Q V L R E +IL LM N G+ ++K Q+ +++ Sbjct: 120 SGSATEVIEVGELSLSLSEQSIRYQEVVLKLTRNEFKILAALMTNAGRVMSKDQLQQSLH 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +D++ +N +E HI LRKK N P+ + R +GY I+ Sbjct: 180 G-WDDSASDNAIEVHIHNLRKKAPNV----PIKNIRGVGYIIE 217 >gi|19746167|ref|NP_607303.1| response regulator [Streptococcus pyogenes MGAS8232] gi|21910410|ref|NP_664678.1| putative DNA-binding response regulator [Streptococcus pyogenes MGAS315] gi|28895986|ref|NP_802336.1| response regulator [Streptococcus pyogenes SSI-1] gi|50914283|ref|YP_060255.1| CiaR [Streptococcus pyogenes MGAS10394] gi|56807753|ref|ZP_00365614.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pyogenes M49 591] gi|71903585|ref|YP_280388.1| transcriptional regulatory protein [Streptococcus pyogenes MGAS6180] gi|94988681|ref|YP_596782.1| transcriptional regulatory protein [Streptococcus pyogenes MGAS9429] gi|94990571|ref|YP_598671.1| transcriptional regulatory protein ciaR [Streptococcus pyogenes MGAS10270] gi|94992504|ref|YP_600603.1| transcriptional regulatory protein ciaR [Streptococcus pyogenes MGAS2096] gi|94994493|ref|YP_602591.1| CiaR family transcriptional regulator [Streptococcus pyogenes MGAS10750] gi|139473693|ref|YP_001128409.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|209559503|ref|YP_002285975.1| Transcriptional regulatory protein ciaR [Streptococcus pyogenes NZ131] gi|306827286|ref|ZP_07460573.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782] gi|19748346|gb|AAL97802.1| putative response regulator [Streptococcus pyogenes MGAS8232] gi|21904608|gb|AAM79481.1| putative DNA-binding response regulator [Streptococcus pyogenes MGAS315] gi|28811236|dbj|BAC64169.1| putative response regulator [Streptococcus pyogenes SSI-1] gi|50903357|gb|AAT87072.1| CiaR [Streptococcus pyogenes MGAS10394] gi|71802680|gb|AAX72033.1| transcriptional regulatory protein [Streptococcus pyogenes MGAS6180] gi|94542189|gb|ABF32238.1| transcriptional regulatory protein [Streptococcus pyogenes MGAS9429] gi|94544079|gb|ABF34127.1| Transcriptional regulatory protein ciaR [Streptococcus pyogenes MGAS10270] gi|94546012|gb|ABF36059.1| Transcriptional regulatory protein ciaR [Streptococcus pyogenes MGAS2096] gi|94548001|gb|ABF38047.1| Transcriptional regulatory protein ciaR [Streptococcus pyogenes MGAS10750] gi|134271940|emb|CAM30178.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|209540704|gb|ACI61280.1| Transcriptional regulatory protein ciaR [Streptococcus pyogenes NZ131] gi|304430433|gb|EFM33455.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782] Length = 224 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 2/153 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGP 130 ++P++ ++ L F+ G DD + KP + E+ R+ A+ +R K ++ G Sbjct: 72 KIPVLIMTAKEGLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTGKFADKNISFGN 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V ++ +V+G+V L +E +L YL+ N+ + KTQIF ++G FD +VV Sbjct: 132 LVVDLARKEVKVEGKVVELLGKEFDLLVYLLQNQNVILPKTQIFDRLWG-FDSDTTISVV 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E +ISK+RKKL+ + + + R +GY + N Sbjct: 191 EVYISKIRKKLKGTRFVNRLQTLRSVGYILKNN 223 >gi|295094577|emb|CBK83668.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 239 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 13/145 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125 +R SQVP+I S S ++ D G DD + KP +E+++R+ +I RR V +N+ Sbjct: 74 LRHTSQVPIIFASARTSEDDKVNGLDMGGDDYIAKPYSLKELMSRIRSILRRTYGVDDNK 133 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPR---------RERRILEYLMANRGKRVAKTQIFSA 176 +E + + +DG + E+ + R +E +L Y+ NRG+ + K QI SA Sbjct: 134 SEM--LTLNTDGNEIEINRHARTVNRNKSNVDMKPKEFDLLVYMAENRGRVLTKEQIMSA 191 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++GL+ + VE + V H+ LR+KL Sbjct: 192 VWGLYSD-VEPSTVAVHVRWLREKL 215 >gi|257064017|ref|YP_003143689.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256791670|gb|ACV22340.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 228 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 83/155 (53%), Gaps = 2/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126 RA+ P++ ++ ++ + DSG DD + KP E+LA + A+ RR +V + Sbjct: 68 RANLDTPVLLLTARDAIPDKITGLDSGADDYMTKPFSPAELLAHLRALTRRQGQVVFEKL 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 E G + + + D + L +E I LM+N G+ ++K Q+ S ++G+ + + Sbjct: 128 EAGDLSLNLESHDLSSGQKTINLSFKEYEIANILMSNAGQIISKEQLISKVWGV-ESTAD 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +N VE++IS LRKKL+ +D+ R +GY ++ Sbjct: 187 DNNVEAYISFLRKKLKFLGSSVSIDTVRRVGYKLN 221 >gi|85708091|ref|ZP_01039157.1| two-component response regulator [Erythrobacter sp. NAP1] gi|85689625|gb|EAQ29628.1| two-component response regulator [Erythrobacter sp. NAP1] Length = 225 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 8/150 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIR 132 P++ ++ S + D+G DD + KP E++AR+ A+ RR + + T G +R Sbjct: 74 PVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRASGNTSSELTAGGVR 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVE 191 + + + GE L +E ++L YLM ++GK V++T++ IY FD + N +E Sbjct: 134 LDTRSGRVTLDGEPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYDQDFDR--DSNTIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++++RK KLG + + + R LGYS+D Sbjct: 192 VFVTRIRK----KLGAEVITTIRGLGYSLD 217 >gi|323704591|ref|ZP_08116169.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323536053|gb|EGB25826.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 222 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 98/198 (49%), Gaps = 16/198 (8%) Query: 10 LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+ + ALF +DG + F + F+ L D+S G VL + IR Sbjct: 21 LEKNNFDALFAEDGSTGINMFKNNSFDIVLLDVMLPDMS---------GWNVL---KTIR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRA 126 S++P++ I+ L F+ G DD V KP RE++AR+ AI R K S+N Sbjct: 69 ESSKIPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVIARIKAILSRSKWAESDNSI 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 I + +D R +V G+ L +E +L L N GK +++ + + ++G ++ + Sbjct: 129 SFSGITIDTDSRVVKVDGKKIDLTPKEFDLLSLLAQNMGKALSREKCLNIVWG-YEFFGD 187 Query: 187 ENVVESHISKLRKKLRNK 204 V++HI +LR+KL +K Sbjct: 188 LRTVDTHIKQLREKLGDK 205 >gi|223983544|ref|ZP_03633727.1| hypothetical protein HOLDEFILI_01008 [Holdemania filiformis DSM 12042] gi|223964472|gb|EEF68801.1| hypothetical protein HOLDEFILI_01008 [Holdemania filiformis DSM 12042] Length = 237 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 2/153 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLKVSNNRAETGP 130 Q ++ +S S+ + D G DD + KP H E+LAR+ + RR + G Sbjct: 81 QQKVLILSARGSVGDKVKGLDLGADDYLVKPFHFEELLARIRNLTGRRFIRQDVVVCRGS 140 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 +R+ + V+ + L +E +ILE L + GKR++ I S ++G DE + N Sbjct: 141 LRIDTGSHQVYVRDQRLKLTAKETQILETLALHEGKRLSAETIISQVWG-EDEDLFSNAF 199 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + H+S LR+KL G D ++ +R LGY + N Sbjct: 200 KVHLSSLRRKLAAASGEDWIECQRGLGYCLKEN 232 >gi|149203840|ref|ZP_01880809.1| two component transcriptional regulator, winged helix family protein [Roseovarius sp. TM1035] gi|149142957|gb|EDM30999.1| two component transcriptional regulator, winged helix family protein [Roseovarius sp. TM1035] Length = 238 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S ++ + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRLARIAT--PILILSGADDTESKIKGFGFGADDYLTKPFHRDELVARIHAII 116 Query: 117 RRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + TG I V D + + G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSVIRTGKINVNLDAKTVDAGGKPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +YG DE E +++ I KLRKKL Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201 >gi|326387920|ref|ZP_08209526.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326207966|gb|EGD58777.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 225 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 83/151 (54%), Gaps = 10/151 (6%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGPI 131 P++ ++ S + D+G DD + KP E++AR+ A+ RR N+ AE G + Sbjct: 74 PVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRR-STGNSSAELIAGDV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190 R+ + + GE L +E ++L YL+ ++GK V++T++ IY FD + N + Sbjct: 133 RLDTRSGRVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQDFDR--DSNTI 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++++RK KLG D + + R LGYS++ Sbjct: 191 EVFVTRIRK----KLGPDVITTIRGLGYSLN 217 >gi|293553530|ref|ZP_06674158.1| transcriptional regulatory protein CiaR [Enterococcus faecium E1039] gi|291602407|gb|EFF32631.1| transcriptional regulatory protein CiaR [Enterococcus faecium E1039] Length = 224 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 5/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I + Q P++ ++ SL+ ++ F+ G DD + KP + E++ RV A+ +R Sbjct: 63 LAKIRKEKIQTPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSLGL 122 Query: 123 NNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + D + EV + +V P+ +E +L Y + N+G + K QIF I+G Sbjct: 123 FDENVLKYKDISYDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 FD V+E ++S LRK LR+ G D + + R +GY Sbjct: 182 FDSDTTITVIEVYMSNLRKHLRST-GLDKEIKTLRNVGY 219 >gi|87200082|ref|YP_497339.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135763|gb|ABD26505.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 225 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 83/152 (54%), Gaps = 8/152 (5%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGP 130 + P++ ++ S + D+G DD + KP E++AR+ A+ RR S++ G Sbjct: 72 KFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRASGNSSSELTAGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189 +R+ + + GE L +E ++L YL+ ++GK V++T++ IY FD + N Sbjct: 132 VRLDTRSGRVTLNGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQDFDR--DSNT 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E ++++RK KLG D + + R LGYS+D Sbjct: 190 IEVFVTRIRK----KLGPDVITTIRGLGYSLD 217 >gi|159040344|ref|YP_001539597.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157919179|gb|ABW00607.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 229 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 6/142 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+IR+ S+VP++ I+ S + +SG DD V KP ILAR++A+ RR + + Sbjct: 65 RMIRSISEVPVVVITARRSETDIIHLLNSGADDYVTKPFSGEHILARISAVLRRYRSGTD 124 Query: 125 RA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + R + G+ L RRE +L YL G+ V++ ++ + ++ Sbjct: 125 QEGPGTITVGPLVIGRKERRVTMDGKPLKLTRREYDVLTYLAERAGQVVSRRELMTEVWR 184 Query: 180 LFDEAVEENVVESHISKLRKKL 201 EE ++ HIS LR+KL Sbjct: 185 QARIG-EEQTIDVHISWLRRKL 205 >gi|251782466|ref|YP_002996768.1| putative response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391095|dbj|BAH81554.1| putative response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 224 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 79/148 (53%), Gaps = 2/148 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGP 130 ++P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K ++ G Sbjct: 72 KIPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRTGKFTDKNLAFGN 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V ++ +V G L +E +L YL+ N+ + KTQIF ++G FD +VV Sbjct: 132 VVVDLGQKEVQVDGRPIELLGKEFDLLVYLLQNQNVILPKTQIFDRLWG-FDSDTTISVV 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E ++SK+RKKL+ D + + R +GY Sbjct: 191 EVYVSKIRKKLKGTDFVDKLQTLRSVGY 218 >gi|149204695|ref|ZP_01881659.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseovarius sp. TM1035] gi|149141804|gb|EDM29856.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseovarius sp. TM1035] Length = 225 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 8/164 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L +R +VP+I ++ L L D G DD V KP+ E++AR A+ RR Sbjct: 60 LRLLPTLRQGGRVPVIVLTARDQLADRLAGLDGGADDYVVKPVEMPELVARARAVLRR-- 117 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +R++T G + + + R V L RRE +LE+LM N G+ ++ + A Sbjct: 118 -PGDRSDTTLRLGALSLDTAARSVSVNDAPIILGRRELGVLEHLMRNAGRVASRKVLEEA 176 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 IY + DE V N +E+ +S+LR+ L P+ + R +G+ + Sbjct: 177 IYTIDDE-VTPNALEAAVSRLRRALETAGCPVPIVNVRGVGWML 219 >gi|125624324|ref|YP_001032807.1| two-component system regulator llrE [Lactococcus lactis subsp. cremoris MG1363] gi|7669466|gb|AAF66142.1| putative response regulator [Lactococcus lactis subsp. cremoris MG1363] gi|124493132|emb|CAL98096.1| two-component system regulator llrE [Lactococcus lactis subsp. cremoris MG1363] gi|300071107|gb|ADJ60507.1| two-component system regulator llrE [Lactococcus lactis subsp. cremoris NZ9000] Length = 228 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 108/225 (48%), Gaps = 20/225 (8%) Query: 15 YIALFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAF--------------LIGKGE 58 Y L +D S+ + L FE++ S+A + ++A+E F +I K + Sbjct: 3 YHVLIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFEQAKPAVDVVLLDWMIPKLD 62 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + L R+ + P+I ++ + + D+G DD + KP E+LAR+ I+R+ Sbjct: 63 GLTVLRRMKKIQPNTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRK 122 Query: 119 LKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S ++ E ++V EV G+ L +RE +L Y + +RG V++ I + Sbjct: 123 WSTSRSKVYELDYLKVDLTAHTTEVAGKTVNLTQREFALLSYFLEHRGIVVSRADILDDV 182 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G+ FD +EN V++++ LR + +++ R +GY ++ Sbjct: 183 WGMDFDG--QENTVDAYVRYLRATIDLPNHKSLIETVRGVGYRLN 225 >gi|328545642|ref|YP_004305751.1| Two component transcriptional regulator, winged helix family [polymorphum gilvum SL003B-26A1] gi|326415382|gb|ADZ72445.1| Two component transcriptional regulator, winged helix family [Polymorphum gilvum SL003B-26A1] Length = 219 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 7/156 (4%) Query: 67 IRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +RA V P+I ++ + ++ ++G DD + KP E+ AR+ ++ RR + N Sbjct: 66 LRARGDVTPVIILTALDQVSDRIEGLNAGADDYLVKPFDLAELSARIGSVARRYSGNPNP 125 Query: 126 AET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 T G + + R G PL RE + E +A G+ ++K Q+ +Y FD Sbjct: 126 ILTHGALDIDLAARSVHRDGRPVPLTAREWALFEAFLARPGQLLSKAQLEEKLYA-FDAE 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 VE N +E H+S+LRK KLG ++++R +GY + Sbjct: 185 VESNTIEVHVSRLRK----KLGTSVIETERGMGYRL 216 >gi|254469487|ref|ZP_05082892.1| DNA-binding response regulator [Pseudovibrio sp. JE062] gi|211961322|gb|EEA96517.1| DNA-binding response regulator [Pseudovibrio sp. JE062] Length = 222 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 9/168 (5%) Query: 57 GEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ LE R +R + VP++ +S + + +D + G DD + KP E+LAR A+ Sbjct: 56 GQDGLEFLRAVRDDKADVPILILSARETTKNRIDGLNLGADDYLTKPFDMEELLARCRAL 115 Query: 116 YRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR V R + G + + D + G L R+L L+ RG+ V+K+ + Sbjct: 116 VRR-SVGRTRMLLQHGALTLDLDQKKACYNGAEVVLQPLAFRLLTILLERRGRVVSKSDL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +YG ++E E NV+E ++S++R+K +KL + + R +GY +D Sbjct: 175 MEKLYG-WEENAESNVLEVYVSQIRRKTTSKL----IRTIRGVGYIVD 217 >gi|148550755|ref|YP_001260194.1| cell cycle transcriptional regulator CtrA [Sphingomonas wittichii RW1] gi|148503174|gb|ABQ71427.1| cell cycle transcriptional regulator CtrA [Sphingomonas wittichii RW1] Length = 233 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 8/148 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ + P++ +S L + + F G D+ + KP H E++AR+ A+ RR S Sbjct: 63 LKKLRMGRVETPVLILSGISELDSKVRAFAMGADEYLTKPFHKVELVARINAVVRR---S 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 AE+ G I V DG+ EV G L +E +LE L +G + K + +Y Sbjct: 120 KGHAESVIRIGKIAVNLDGKVAEVDGARIHLTGKEYAMLELLALRQGSTLTKEMFLNHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG 206 G DE E +++ I KLRKKL G Sbjct: 180 GGIDEP-ELKIIDVFICKLRKKLTLACG 206 >gi|121535649|ref|ZP_01667454.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121305753|gb|EAX46690.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 224 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 81/147 (55%), Gaps = 10/147 (6%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ + +RA +P++ ++ S+ ++ ++G DD + KP E+LAR+ A+ RR Sbjct: 60 LEIIKRVRATGHTMPILLLTARDSVADRVNGLETGADDYLTKPFAIPELLARIKALLRR- 118 Query: 120 KVSNNRAETGPIR---VFSDG--RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S N + G I V DG RD V+G+ L +E +LE+LM N+ + + + QIF Sbjct: 119 --SGNLGKDGKISYGGVVIDGKLRDGFVEGQALGLTAKEYELLEFLMLNKEQILTREQIF 176 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++G F +VV+ +I LRKKL Sbjct: 177 DRVWG-FASETTISVVDLYIHYLRKKL 202 >gi|16119399|ref|NP_396105.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|15161927|gb|AAK90546.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 224 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 100/225 (44%), Gaps = 17/225 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + D G+ L+ L A D+ I+ L G+ Sbjct: 3 LLLIEDDPEMTDALKVALSQHGIVLDAVGDLATAREAIIMADYDIVLIDRQL-PDGDGST 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + RA S I IS S + + G DD + KP E++AR++A+ RR Sbjct: 62 FLADLRRAGSNTRSIIISALRSTDERISGLNDGADDYLPKPFEIPELVARMSAVLRRAPT 121 Query: 122 SNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 TGP V S G D V G L RRE I+E L+ NRG+ V ++ + Sbjct: 122 ------TGPF-VLSAGNVTYDRVSCDVHVNGIRLALTRRELLIIETLLRNRGRTVLRSSL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y FD+ ++ N +ES++S+LR+KL + + R +GY Sbjct: 175 EGQVYS-FDDEIQSNSLESNMSRLRRKLGEAEADIVIKNIRGIGY 218 >gi|304321358|ref|YP_003855001.1| two-component transcriptional regulator [Parvularcula bermudensis HTCC2503] gi|303300260|gb|ADM09859.1| two-component transcriptional regulator [Parvularcula bermudensis HTCC2503] Length = 230 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 6/147 (4%) Query: 57 GEKVLELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G VL+ R+ + ++ + L G+ D + L F G DD + KP H E++AR+ AI Sbjct: 59 GFDVLKSLRVAKVNTPILILTGLGDTENKVRGLGF---GADDYMTKPFHKDELVARIHAI 115 Query: 116 YRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR K S + TG + V D + EV G+ L +E ++LE L +G + K Sbjct: 116 VRRSKGHSQSVITTGALTVNLDAKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFL 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 + +YG DE E +++ I KLRKKL Sbjct: 176 NHLYGGMDEP-ELKIIDVFICKLRKKL 201 >gi|53716767|ref|YP_105784.1| DNA-binding response regulator TctD [Burkholderia mallei ATCC 23344] gi|167722921|ref|ZP_02406157.1| DNA-binding response regulator TctD [Burkholderia pseudomallei DM98] gi|167741901|ref|ZP_02414675.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 14] gi|167819082|ref|ZP_02450762.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 91] gi|167827467|ref|ZP_02458938.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 9] gi|167848936|ref|ZP_02474444.1| DNA-binding response regulator TctD [Burkholderia pseudomallei B7210] gi|167897542|ref|ZP_02484944.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 7894] gi|167905895|ref|ZP_02493100.1| DNA-binding response regulator TctD [Burkholderia pseudomallei NCTC 13177] gi|167914202|ref|ZP_02501293.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 112] gi|167922113|ref|ZP_02509204.1| DNA-binding response regulator TctD [Burkholderia pseudomallei BCC215] gi|254179157|ref|ZP_04885809.1| DNA-binding response regulator TctD [Burkholderia mallei ATCC 10399] gi|254189737|ref|ZP_04896246.1| DNA-binding response regulator TctD [Burkholderia pseudomallei Pasteur 52237] gi|254193179|ref|ZP_04899614.1| DNA-binding response regulator TctD [Burkholderia pseudomallei S13] gi|254356588|ref|ZP_04972863.1| DNA-binding response regulator TctD [Burkholderia mallei 2002721280] gi|52422737|gb|AAU46307.1| DNA-binding response regulator TctD [Burkholderia mallei ATCC 23344] gi|148025615|gb|EDK83738.1| DNA-binding response regulator TctD [Burkholderia mallei 2002721280] gi|157937414|gb|EDO93084.1| DNA-binding response regulator TctD [Burkholderia pseudomallei Pasteur 52237] gi|160694484|gb|EDP84494.1| DNA-binding response regulator TctD [Burkholderia mallei ATCC 10399] gi|169649933|gb|EDS82626.1| DNA-binding response regulator TctD [Burkholderia pseudomallei S13] Length = 223 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L++ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 60 LDVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L + R E GP+ S R + + L RER +LE L+ G+ + K + I+ Sbjct: 120 LGHEHGRVECGPLAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LRKKL G V + R LGY ++ Sbjct: 180 GL-DESVNADAIEIYVHRLRKKLEGS-GVAIV-TLRGLGYLLE 219 >gi|153812201|ref|ZP_01964869.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174] gi|149831608|gb|EDM86695.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174] Length = 227 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 78/145 (53%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IR +S+VP+I ++ + L FD GVD+ ++KP + ++ARV AI RR Sbjct: 65 EVCREIRKNSKVPIIMLTARGDERDELLGFDLGVDEYISKPFSPKILVARVEAILRRTGQ 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N+ G I + V G+ L +E +L Y + N+G +++ +I ++++ Sbjct: 125 DAGNDVLSAGGIVIDKSAHQASVDGKPMELSFKEFELLTYFLENQGIALSREKILNSVWN 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR K+ +K Sbjct: 185 -YDYFGDARTIDTHVKKLRSKMGDK 208 >gi|257870932|ref|ZP_05650585.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257805096|gb|EEV33918.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 224 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 6/156 (3%) Query: 67 IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN- 123 +R H+ Q P++ ++ L+ + F G DD + KP + E+L R A+ +R L + N Sbjct: 66 LRQHTVQTPVLILTAKDGLEDKVAGFQKGADDYLTKPFYREELLMRCKALLKRSLGLFNE 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N+ + + + ++ P+ +E +L Y + NRG + K QIF I+G FD Sbjct: 126 NQVVYKGLTCNLSTNEVTIDEKLLPIQGKEFALLVYFLQNRGIILTKEQIFDRIWG-FDS 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VVE +IS LRK LR+ G D + + R +GY Sbjct: 185 ETTITVVEVYISNLRKHLRDT-GIDKEIRTLRNVGY 219 >gi|171741317|ref|ZP_02917124.1| hypothetical protein BIFDEN_00396 [Bifidobacterium dentium ATCC 27678] gi|283455323|ref|YP_003359887.1| response regulator protein Vicr [Bifidobacterium dentium Bd1] gi|171276931|gb|EDT44592.1| hypothetical protein BIFDEN_00396 [Bifidobacterium dentium ATCC 27678] gi|283101957|gb|ADB09063.1| Response regulator protein VicR [Bifidobacterium dentium Bd1] Length = 234 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/173 (31%), Positives = 89/173 (51%), Gaps = 19/173 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L R IR S+VP+I ++ + + + G DD V KP RE+LARV A+ RR ++ Sbjct: 63 LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARVRAVLRRNQMV 122 Query: 122 --SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S++ ++ G I + + V+GE P +E +LEYLM N+G+ + + Q+ Sbjct: 123 AESDSASDDDIPLVCGDISMKIGQHEVSVRGENVFFPLKEFELLEYLMQNKGRVMTRHQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 I+G D + ++ H+ K++R+K+ DP K R LGY ID Sbjct: 183 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPKYLTTVRGLGYKID 230 >gi|144900258|emb|CAM77122.1| two-component cell cycle transcriptional regulator ctrA, winged helix family [Magnetospirillum gryphiswaldense MSR-1] Length = 233 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 3/149 (2%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +RA + P++ +S + G DD + KP E++AR+ AI RR K Sbjct: 61 EVLRRLRASRIETPVLILSGLTEPDKKIKGLGFGADDYLTKPFDKGELVARIQAIVRRSK 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +TG + V D R +V GE L +E ILE L +G+ + K Q + +YG Sbjct: 121 GHAQSVIKTGKLSVNLDQRTVDVGGEPLHLTAKEYGILELLSLRKGQTLTKEQFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD 208 DE E +++ I KLRKKL G D Sbjct: 181 GIDEP-ELKIIDVFICKLRKKLSTATGGD 208 >gi|124382081|ref|YP_001023940.1| DNA-binding response regulator TctD [Burkholderia mallei NCTC 10229] gi|126445475|ref|YP_001062036.1| transcriptional regulatory protein TctD [Burkholderia pseudomallei 668] gi|126446503|ref|YP_001078685.1| DNA-binding response regulator TctD [Burkholderia mallei NCTC 10247] gi|126457411|ref|YP_001074988.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 1106a] gi|217418642|ref|ZP_03450149.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 576] gi|226195063|ref|ZP_03790654.1| DNA-binding response regulator TctD [Burkholderia pseudomallei Pakistan 9] gi|237510327|ref|ZP_04523042.1| DNA-binding response regulator TctD [Burkholderia pseudomallei MSHR346] gi|238563076|ref|ZP_00439448.2| DNA-binding response regulator TctD [Burkholderia mallei GB8 horse 4] gi|242313060|ref|ZP_04812077.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 1106b] gi|251766834|ref|ZP_02265115.2| DNA-binding response regulator TctD [Burkholderia mallei PRL-20] gi|254183073|ref|ZP_04889665.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 1655] gi|254200597|ref|ZP_04906962.1| DNA-binding response regulator TctD [Burkholderia mallei FMH] gi|254204618|ref|ZP_04910971.1| DNA-binding response regulator TctD [Burkholderia mallei JHU] gi|254264953|ref|ZP_04955818.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 1710a] gi|254300010|ref|ZP_04967456.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 406e] gi|124290101|gb|ABM99370.1| DNA-binding response regulator TctD [Burkholderia mallei NCTC 10229] gi|126224966|gb|ABN88471.1| transcriptional regulatory protein TctD [Burkholderia pseudomallei 668] gi|126231179|gb|ABN94592.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 1106a] gi|126239357|gb|ABO02469.1| DNA-binding response regulator TctD [Burkholderia mallei NCTC 10247] gi|147748209|gb|EDK55284.1| DNA-binding response regulator TctD [Burkholderia mallei FMH] gi|147754204|gb|EDK61268.1| DNA-binding response regulator TctD [Burkholderia mallei JHU] gi|157809872|gb|EDO87042.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 406e] gi|184213606|gb|EDU10649.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 1655] gi|217397946|gb|EEC37961.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 576] gi|225932868|gb|EEH28864.1| DNA-binding response regulator TctD [Burkholderia pseudomallei Pakistan 9] gi|235002532|gb|EEP51956.1| DNA-binding response regulator TctD [Burkholderia pseudomallei MSHR346] gi|238521412|gb|EEP84864.1| DNA-binding response regulator TctD [Burkholderia mallei GB8 horse 4] gi|242136299|gb|EES22702.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 1106b] gi|243064584|gb|EES46770.1| DNA-binding response regulator TctD [Burkholderia mallei PRL-20] gi|254215955|gb|EET05340.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 1710a] Length = 252 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L++ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 89 LDVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRS 148 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L + R E GP+ S R + + L RER +LE L+ G+ + K + I+ Sbjct: 149 LGHEHGRVECGPLAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIF 208 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 GL DE+V + +E ++ +LRKKL Sbjct: 209 GL-DESVNADAIEIYVHRLRKKL 230 >gi|84498453|ref|ZP_00997223.1| response regulator receiver [Janibacter sp. HTCC2649] gi|84381196|gb|EAP97080.1| response regulator receiver [Janibacter sp. HTCC2649] Length = 226 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 14/178 (7%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G +++ R +R S VP+I ++ S + + G DD V KP RE+LAR+ Sbjct: 53 LMLPGLSGVDVCRALRQRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARI 112 Query: 113 AAIYRRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RRL ++ E GP+R+ + V G LP +E +LE L+ N G+ + Sbjct: 113 KAVLRRLSEPEELLPTTLEAGPVRMDVERHVVTVGGAATQLPLKEFELLEMLLRNTGRVL 172 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 + Q+ ++G D + ++ H+ K+LR K+ DP K R LGY + Sbjct: 173 TRMQLIDRVWG-SDYVGDTKTLDVHV----KRLRAKVEPDPAAPKHIVTVRGLGYKFE 225 >gi|284035840|ref|YP_003385770.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283815133|gb|ADB36971.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 223 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 3/162 (1%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 EL R IR + +VP++ ++ L + F SG DD + KP RE+L RV A+ RR Sbjct: 60 FELCRYIRQQTNEVPVLLLTALDGLNDKAEGFGSGADDYLCKPFEFRELLWRVQALTRRH 119 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R + + + D R G+ PL E +LEYLM NRG+ V++ I ++ Sbjct: 120 YRERQRVLQVADLVLDPDARQVIRGGKHIPLTSHEYALLEYLMRNRGQVVSRVDIAERVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + A NV++ ++ LRKK+ + + +GY + Sbjct: 180 EV-NLATSTNVIDVYMGYLRKKVDRDFASKLLHTVVGMGYVL 220 >gi|58584853|ref|YP_198426.1| response regulator [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419169|gb|AAW71184.1| Response regulator consisting of a CheY-like receiver domain and wHTH-type DNA-binding domain [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 256 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 9/196 (4%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKVLELPRI 66 AL DG+ F D S + +N+ + S+ D+ ++ L G + L R+ Sbjct: 18 NALTSDGH---FCDVVTSAQDYNN----NMVSSNGDHYDLVILDIHLPGDIDGYDILLRL 70 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNR 125 A +VP++ +S ++ G DD + KP H E+LAR+ AI RR K + Sbjct: 71 RSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAIVRRTKGHPESV 130 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G I + D R EV+G+ L +E ++E L +G + K +Y DE Sbjct: 131 IKIGNININFDHRVVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFLDHLYNGLDEPS 190 Query: 186 EENVVESHISKLRKKL 201 + +V+ + KLRKKL Sbjct: 191 DNKIVDVFMCKLRKKL 206 >gi|269958512|ref|YP_003328299.1| putative response regulator [Anaplasma centrale str. Israel] gi|269848341|gb|ACZ48985.1| putative response regulator [Anaplasma centrale str. Israel] Length = 294 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130 +VP++ +S S+ + G DD + KP H E+LAR+ AI RR + + G Sbjct: 77 KVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAIVRRTRGHPESIVRVGN 136 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I + D + E GE+ L ++E ++E L + G + K S +Y DE ++ ++ Sbjct: 137 ISINLDHKCVECNGEIIHLTKKEYGMIELLSSRLGTVLTKEMFLSHLYRELDEPSDDKII 196 Query: 191 ESHISKLRKKLR 202 + + KLRKKL+ Sbjct: 197 DVFMCKLRKKLK 208 >gi|82751956|ref|YP_417697.1| two-component response regulator [Staphylococcus aureus RF122] gi|123549423|sp|Q2YZ24|HSSR_STAAB RecName: Full=Heme response regulator hssR gi|82657487|emb|CAI81929.1| two-component response regulator [Staphylococcus aureus RF122] Length = 224 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 95/186 (51%), Gaps = 6/186 (3%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L R D++ I+ + G +L ++ +P+I ++ +L F SG DD Sbjct: 40 LLEKQRVDIAVIDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156 V KP +E++ R+ A+ RR +++N T G + + + +V + LP +E ++ Sbjct: 98 YVTKPFEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 157 Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 L +++A R K++ + QI I+G +D +E V+ HI +LR++L+ +++ R Sbjct: 158 L-FMLATRPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLKKLNATLTIETVRG 215 Query: 216 LGYSID 221 GY ++ Sbjct: 216 QGYKVE 221 >gi|325525528|gb|EGD03325.1| signal transduction response regulator [Burkholderia sp. TJI49] Length = 196 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 4/157 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ R + VP++ ++ + S+ +D F +G DD V KP RE++AR+ A+ RR V Sbjct: 34 LARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRQAGV 93 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + R+ L RRE ILE LM + K V+K ++ +++ L Sbjct: 94 GATQLACGDLVYAFGTREFRCGDAPLALRRREHAILETLMLQQNKTVSKARLMDSVFALD 153 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + ++ +I +LRK L + + R LGY Sbjct: 154 DEP-SADAIDIYIHRLRKHLAASTA--EIITLRGLGY 187 >gi|317010679|gb|ADU84426.1| OmpR family two-component system response regulator [Helicobacter pylori SouthAfrica7] Length = 223 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 32/231 (13%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55 M +L+ ++ V G I + G++++GF SLE E+L D+ + ++ Sbjct: 1 MRILLIEKNSVLGGEI----EKGLNIKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 + + RI H + ++ SD P+ + + F+ G DD + KP +R I A VA I Sbjct: 52 DKNALSFVSRIKEKHPSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARI 109 Query: 116 YRRLKV-SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RL+ +N E G + + D GR+ EV+G+ F +L +L +R + Sbjct: 110 EARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQI 162 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+K Q+ AI+ E V NV+E I+++R+K+ LG V++ R GY Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 212 >gi|209963810|ref|YP_002296725.1| two component response transcriptional regulator [Rhodospirillum centenum SW] gi|209957276|gb|ACI97912.1| two component response transcriptional regulator [Rhodospirillum centenum SW] Length = 219 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 81/151 (53%), Gaps = 8/151 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPI 131 P++ ++ + Q ++ D+G DD + KP E+LAR+ A+ RR + GP+ Sbjct: 73 TPVLILTARGTWQEKVEGIDAGADDYLAKPFRMEELLARLRALIRRAGGHAAADLRCGPV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190 + + V G + L E ++L+YLM ++G+ V++T++ +Y FD + N + Sbjct: 133 LLDTRTGRVSVDGRLVSLTAHELKVLDYLMHHQGRVVSRTELTEHVYAQDFDR--DSNTI 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E + +LR+ KLG D + ++R LGY +D Sbjct: 191 EVFVGRLRR----KLGVDVIRTERGLGYRMD 217 >gi|167957496|ref|ZP_02544570.1| two component transcriptional regulator, winged helix family protein [candidate division TM7 single-cell isolate TM7c] Length = 224 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 2/150 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPI 131 P I ++ + D+G DD + KP E+LAR+ AI RR K + + G + Sbjct: 75 TPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRRPKKAQPTILKVGKL 134 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + R E + L +E +L+YLM + G+ ++K QI ++ FD + N VE Sbjct: 135 HIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHVWN-FDADILPNTVE 193 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++I LRKK+ K + + R +GY ++ Sbjct: 194 AYIKALRKKIDEKYKVKYIKTVRGIGYRLE 223 >gi|149021563|ref|ZP_01835618.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP23-BS72] gi|147930259|gb|EDK81244.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP23-BS72] Length = 218 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 52/219 (23%), Positives = 106/219 (48%), Gaps = 6/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++G D G E + + +E L+ + +V+ + + LE Sbjct: 4 LIVEDEEMIREGVSDYLTDCG--YETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGLE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR SQVP++ ++ + + + F S D + KP + RV AI++R + Sbjct: 62 VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYDT 121 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +V + + G+ P+ +E IL+YL+ N G+ + ++QI A++ D Sbjct: 122 GRIFSYKATKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKATD 181 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E + V++ +I K+LR KL D + + R +GY ++ Sbjct: 182 EVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216 >gi|84502373|ref|ZP_01000509.1| transcriptional activator protein czcR [Oceanicola batsensis HTCC2597] gi|84389185|gb|EAQ01982.1| transcriptional activator protein czcR [Oceanicola batsensis HTCC2597] Length = 237 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 7/104 (6%) Query: 102 PIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRIL 157 P+ E+ +R+ +I RR S+ A + G + F DGRDPEV G V L RRE I Sbjct: 103 PVKAVELRSRINSITRR---SHGHAAESIQVGEVTAFFDGRDPEVSGGVVKLSRREHAIF 159 Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + L+ N G+ V+K I+ A+YG+ ++ + V++ +I K+RKK+ Sbjct: 160 QQLVLNAGRVVSKGAIYDAVYGMAEDQPFDKVIDVYICKIRKKI 203 >gi|16803100|ref|NP_464585.1| hypothetical protein lmo1060 [Listeria monocytogenes EGD-e] gi|47096149|ref|ZP_00233749.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes str. 1/2a F6854] gi|224500297|ref|ZP_03668646.1| hypothetical protein LmonF1_11754 [Listeria monocytogenes Finland 1988] gi|224502626|ref|ZP_03670933.1| hypothetical protein LmonFR_08914 [Listeria monocytogenes FSL R2-561] gi|254828437|ref|ZP_05233124.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes FSL N3-165] gi|254830171|ref|ZP_05234826.1| hypothetical protein Lmon1_02380 [Listeria monocytogenes 10403S] gi|254898767|ref|ZP_05258691.1| hypothetical protein LmonJ_03090 [Listeria monocytogenes J0161] gi|254911744|ref|ZP_05261756.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes J2818] gi|254936070|ref|ZP_05267767.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes F6900] gi|284801392|ref|YP_003413257.1| hypothetical protein LM5578_1143 [Listeria monocytogenes 08-5578] gi|284994534|ref|YP_003416302.1| hypothetical protein LM5923_1097 [Listeria monocytogenes 08-5923] gi|16410462|emb|CAC99138.1| lmo1060 [Listeria monocytogenes EGD-e] gi|47015498|gb|EAL06431.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes str. 1/2a F6854] gi|258600833|gb|EEW14158.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes FSL N3-165] gi|258608660|gb|EEW21268.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes F6900] gi|284056954|gb|ADB67895.1| hypothetical protein LM5578_1143 [Listeria monocytogenes 08-5578] gi|284060001|gb|ADB70940.1| hypothetical protein LM5923_1097 [Listeria monocytogenes 08-5923] gi|293589695|gb|EFF98029.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes J2818] Length = 220 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 8/162 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +IR+ S P++ ++ L FD G DD + KP + +L RV + RR+ S Sbjct: 63 LTELIRSTSTTPILMMTALSEEDDELKGFDLGADDYIQKPFSYLVLLKRVQVLLRRVNQS 122 Query: 123 NNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G I V ++ + GE L ++E IL L+ N+ K + + I S + Sbjct: 123 ETKKQILRCGNISVDTETFEVISAGETIELTKKEFDILVLLIKNQKKVITREMILSQAWD 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F V+ +++ +H+ LRKKL + + + R GY +D Sbjct: 183 -FAAIVDTSIINTHMKNLRKKLHT----EKIQTIRGAGYKMD 219 >gi|188591029|ref|YP_001795629.1| DNA-binding response regulator creb [Cupriavidus taiwanensis LMG 19424] gi|170937923|emb|CAP62907.1| response regulator, CheY family [Cupriavidus taiwanensis LMG 19424] Length = 231 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 8/165 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S P+I ++ + + G DD V KP RE+ ARV AI RR + Sbjct: 67 EVCRTLRTFSDAPVIFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRAILRRARG 126 Query: 122 SNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A+ G F+ DG G L R E +L +L+A+ G+ ++ Q+ A++ Sbjct: 127 GGATAKPGEAAGFTHDKDGARLAYHGHWLALTRYEYLLLAWLVAHPGRIYSRAQLMDAVW 186 Query: 179 -GLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSI 220 G D + V++HI LR KLR + G + + + R +GYS+ Sbjct: 187 AGALD--TSDRTVDTHIKTLRAKLREVSAEGAERIRTHRGMGYSL 229 >gi|168179958|ref|ZP_02614622.1| two-component response regulator [Clostridium botulinum NCTC 2916] gi|182669104|gb|EDT81080.1| two-component response regulator [Clostridium botulinum NCTC 2916] Length = 230 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 6/139 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123 IR S +P+I ++ S ++ D G DD + KP RE+++RV AI RR SN Sbjct: 67 IRKTSNIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAIIRR--TSNDCD 124 Query: 124 -NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N ++ I + + E G+ L + E ++L+Y M N K ++K QI +++ + Sbjct: 125 FNIIQSKDIFFYINEMKIEKHGKEIFLSKTELKLLQYFMKNYQKILSKEQIIESLWNIDG 184 Query: 183 EAVEENVVESHISKLRKKL 201 E + EN V +I ++R+K+ Sbjct: 185 EFINENTVAVNIRRIREKI 203 >gi|15900511|ref|NP_345115.1| DNA-binding response regulator VncR [Streptococcus pneumoniae TIGR4] gi|15902572|ref|NP_358122.1| VncR, response regulator [Streptococcus pneumoniae R6] gi|111657296|ref|ZP_01408060.1| hypothetical protein SpneT_02001494 [Streptococcus pneumoniae TIGR4] gi|116516514|ref|YP_816026.1| DNA-binding response regulator VncR [Streptococcus pneumoniae D39] gi|148983983|ref|ZP_01817302.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP3-BS71] gi|148988968|ref|ZP_01820368.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP6-BS73] gi|148992289|ref|ZP_01822012.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP9-BS68] gi|149002281|ref|ZP_01827223.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP14-BS69] gi|149005712|ref|ZP_01829451.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP18-BS74] gi|168482836|ref|ZP_02707788.1| VncR, response regulator [Streptococcus pneumoniae CDC1873-00] gi|168488288|ref|ZP_02712487.1| VncR, response regulator [Streptococcus pneumoniae SP195] gi|168490511|ref|ZP_02714654.1| VncR, response regulator [Streptococcus pneumoniae CDC0288-04] gi|168492763|ref|ZP_02716906.1| VncR, response regulator [Streptococcus pneumoniae CDC3059-06] gi|169833674|ref|YP_001694082.1| VncR, response regulator [Streptococcus pneumoniae Hungary19A-6] gi|182683534|ref|YP_001835281.1| DNA-binding response regulator VncR [Streptococcus pneumoniae CGSP14] gi|221231426|ref|YP_002510578.1| two-component system, response regulator [Streptococcus pneumoniae ATCC 700669] gi|225854136|ref|YP_002735648.1| VncR, response regulator [Streptococcus pneumoniae JJA] gi|225856303|ref|YP_002737814.1| VncR, response regulator [Streptococcus pneumoniae P1031] gi|225858438|ref|YP_002739948.1| VncR, response regulator [Streptococcus pneumoniae 70585] gi|237650128|ref|ZP_04524380.1| VncR, response regulator [Streptococcus pneumoniae CCRI 1974] gi|237821659|ref|ZP_04597504.1| VncR, response regulator [Streptococcus pneumoniae CCRI 1974M2] gi|303253928|ref|ZP_07340049.1| two-component system, response regulator [Streptococcus pneumoniae BS455] gi|303260094|ref|ZP_07346067.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP-BS293] gi|303261278|ref|ZP_07347226.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP14-BS292] gi|303263943|ref|ZP_07349864.1| DNA-binding response regulator VncR [Streptococcus pneumoniae BS397] gi|303265934|ref|ZP_07351830.1| DNA-binding response regulator VncR [Streptococcus pneumoniae BS457] gi|303268316|ref|ZP_07354113.1| DNA-binding response regulator VncR [Streptococcus pneumoniae BS458] gi|4583523|gb|AAD25108.1|AF140356_1 VncR [Streptococcus pneumoniae] gi|5830544|emb|CAB54582.1| response regulator [Streptococcus pneumoniae] gi|14972078|gb|AAK74755.1| DNA-binding response regulator VncR [Streptococcus pneumoniae TIGR4] gi|15458102|gb|AAK99332.1| VncR, response regulator [Streptococcus pneumoniae R6] gi|116077090|gb|ABJ54810.1| DNA-binding response regulator VncR [Streptococcus pneumoniae D39] gi|147759596|gb|EDK66587.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP14-BS69] gi|147762652|gb|EDK69612.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP18-BS74] gi|147924130|gb|EDK75242.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP3-BS71] gi|147925465|gb|EDK76542.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP6-BS73] gi|147928915|gb|EDK79927.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP9-BS68] gi|168996176|gb|ACA36788.1| VncR, response regulator [Streptococcus pneumoniae Hungary19A-6] gi|172043603|gb|EDT51649.1| VncR, response regulator [Streptococcus pneumoniae CDC1873-00] gi|182628868|gb|ACB89816.1| DNA-binding response regulator VncR [Streptococcus pneumoniae CGSP14] gi|183572926|gb|EDT93454.1| VncR, response regulator [Streptococcus pneumoniae SP195] gi|183574934|gb|EDT95462.1| VncR, response regulator [Streptococcus pneumoniae CDC0288-04] gi|183577048|gb|EDT97576.1| VncR, response regulator [Streptococcus pneumoniae CDC3059-06] gi|220673886|emb|CAR68392.1| two-component system, response regulator [Streptococcus pneumoniae ATCC 700669] gi|225720424|gb|ACO16278.1| VncR, response regulator [Streptococcus pneumoniae 70585] gi|225723575|gb|ACO19428.1| VncR, response regulator [Streptococcus pneumoniae JJA] gi|225725840|gb|ACO21692.1| VncR, response regulator [Streptococcus pneumoniae P1031] gi|301799650|emb|CBW32209.1| two-component system, response regulator [Streptococcus pneumoniae OXC141] gi|301801472|emb|CBW34164.1| two-component system, response regulator [Streptococcus pneumoniae INV200] gi|302599104|gb|EFL66129.1| two-component system, response regulator [Streptococcus pneumoniae BS455] gi|302637412|gb|EFL67899.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP14-BS292] gi|302638789|gb|EFL69251.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP-BS293] gi|302642154|gb|EFL72504.1| DNA-binding response regulator VncR [Streptococcus pneumoniae BS458] gi|302644518|gb|EFL74769.1| DNA-binding response regulator VncR [Streptococcus pneumoniae BS457] gi|302646348|gb|EFL76574.1| DNA-binding response regulator VncR [Streptococcus pneumoniae BS397] gi|332074410|gb|EGI84886.1| response regulator [Streptococcus pneumoniae GA17570] gi|332076436|gb|EGI86899.1| response regulator [Streptococcus pneumoniae GA41301] gi|332077033|gb|EGI87495.1| response regulator [Streptococcus pneumoniae GA17545] gi|332202480|gb|EGJ16549.1| response regulator [Streptococcus pneumoniae GA41317] gi|332203763|gb|EGJ17830.1| response regulator [Streptococcus pneumoniae GA47368] Length = 218 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 109/225 (48%), Gaps = 18/225 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++G D G E + + +E L+ + +V+ + + LE Sbjct: 4 LIVEDEEMIREGVSDYLTDCG--YETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGLE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 62 VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRY--- 118 Query: 123 NNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +TG I + D + + G+ P+ +E IL+YL+ N G+ + ++QI A Sbjct: 119 ---YDTGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDA 175 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ DE + V++ +I K+LR KL D + + R +GY ++ Sbjct: 176 VWKATDEVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216 >gi|256751773|ref|ZP_05492646.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|326391351|ref|ZP_08212890.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|256749301|gb|EEU62332.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|325992614|gb|EGD51067.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 224 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 104/216 (48%), Gaps = 18/216 (8%) Query: 10 LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L +GY L ++G + LE FN+ +D+S I ++ L + IR Sbjct: 21 LENNGYEVLVAENGKIGLEYFNN-----------NKDISIILLDIMLPDISGWSLLKTIR 69 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNR 125 S+VP++ I+ L F+ G DD V KP +E++ARV AI R + + Sbjct: 70 EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTYGASEEDGK 129 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E I + R+ V GE L +E +L+ L+ N+GK V++ + + ++G +D Sbjct: 130 TEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG-YDFYG 188 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V++HI +LR+KL K + + +GY +D Sbjct: 189 DLRTVDTHIKQLREKLGEKRKL--IKTVWGIGYKLD 222 >gi|260462544|ref|ZP_05810751.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259031740|gb|EEW33009.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 219 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 8/167 (4%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 GKG + L+ R R + P+I ++ L + +SG DD + KP H E+ AR+AA Sbjct: 57 GKGLEFLKTLR--RKGADTPVIILTARDQLSDRIAGLNSGADDYLVKPFHLGELSARLAA 114 Query: 115 IYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR + N G + + R V G L RE +LE + G + K QI Sbjct: 115 VARRYAGNPNPLVRLGLLEIDQAARRVVVNGAEAMLTSREWAVLEQFLRRPGMTIGKNQI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A+Y F +E N VE ++S+LRK K+G + + R LGY + Sbjct: 175 EDALYA-FGAEIESNTVEVYVSRLRK----KIGRGALTTVRGLGYRL 216 >gi|284028988|ref|YP_003378919.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808281|gb|ADB30120.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 225 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 13/168 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ R +R VP+I +S + + + G DD V KP RE+LAR+ A+ RR Sbjct: 62 EVCRALRTRGNVPVIIVSAKDTEVDKVVGLELGADDYVTKPYSPRELLARIKAVLRRGQD 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++ + E GP+R+ + V G LP +E +LE L+ N G+ + + Q+ I+ Sbjct: 122 VELLPDTLEAGPVRMDVERHVVTVSGTEIRLPLKEFELLEMLLRNTGRVLTRGQLIDRIW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221 G D + ++ H+ K+LR+KL DP + + R LGY + Sbjct: 182 G-ADYVGDTKTLDVHV----KRLRSKLEKDPSNPAHLVTVRGLGYKFE 224 >gi|313891608|ref|ZP_07825215.1| putative response regulator ArlR [Dialister microaerophilus UPII 345-E] gi|313119886|gb|EFR43071.1| putative response regulator ArlR [Dialister microaerophilus UPII 345-E] Length = 226 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 86/158 (54%), Gaps = 5/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VS 122 +RA S +P++ IS ++ + F+SGVDD + KP +E++AR+ A+ RR K V Sbjct: 68 VRAVSSLPIVVISADADVERKVQLFESGVDDYLVKPYATKELIARIRALLRRHKEPQIVV 127 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + + ++ + + + V L ++E +L +L+ N+ + + + +I ++G ++ Sbjct: 128 DPSFNIQDLYIYPERHEVRIGENVIELTKKEFDLLLFLVKNKNRVLKRDEIMKKVWG-YE 186 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A + N+V+ +I +R K+ K G V + R +GY + Sbjct: 187 YAGKTNIVDVYIRYIRSKIDEKFGKKYVHTVRGIGYVV 224 >gi|153940791|ref|YP_001390392.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936687|gb|ABS42185.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318479|gb|ADF98856.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 228 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 100/197 (50%), Gaps = 18/197 (9%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+GY G+ S+E F S++ + + D+S GE E+ RIIR Sbjct: 21 LEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLMLPDIS---------GE---EVCRIIR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126 S V + ++ +L ++ + G D+ + KP RE+ ARV A++RRL N+ + Sbjct: 69 QSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTYNSTSNL 128 Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + G + + D R +V G+ + E IL L++N+GK +++ Q+ + I+G+ D Sbjct: 129 IFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIFGI-DFN 187 Query: 185 VEENVVESHISKLRKKL 201 + ++ HI +RKK+ Sbjct: 188 GYDRTIDVHIKNIRKKI 204 >gi|332187122|ref|ZP_08388862.1| response regulator [Sphingomonas sp. S17] gi|332012822|gb|EGI54887.1| response regulator [Sphingomonas sp. S17] Length = 235 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L R+ A P++ +S + + + F G DD V KP H E++AR+ A+ RR K Sbjct: 63 LKRLRVARVSTPVLILSGINEMDSKVRSFGFGADDYVTKPFHREELIARIHAVVRRSKGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + TG + V D + EV+ L +E +LE L +G + K + +YG Sbjct: 123 SQSIIRTGKLAVNLDAKTVEVENARVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYGGM 182 Query: 182 DEAVEENVVESHISKLRKKL 201 DE E +++ I KLRKKL Sbjct: 183 DEP-ELKIIDVFICKLRKKL 201 >gi|226312392|ref|YP_002772286.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095340|dbj|BAH43782.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 231 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 2/161 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RL 119 +EL R IR VP+I I+ + + DSG +D + KP E+ AR+ + R R Sbjct: 70 IELCRRIRETKDVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRE 129 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N G +R+ + R + E L RE +L Y++ N+ + V++ QI +A++G Sbjct: 130 SKANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWG 189 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD N+V+ +I LR K+ + + + R +GY++ Sbjct: 190 -FDFMGNTNIVDVYIRYLRNKIESDPSVKLIHTVRGIGYTL 229 >gi|299534067|ref|ZP_07047419.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|298717976|gb|EFI58981.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 209 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 36 EWLQSSAREDVS----AIEAFLIGKGEKVLELPRIIRA----HSQVPLIGISDYPSLQTT 87 +W+Q A+ D + + L+ G L+ +++R P++ + ++ Sbjct: 18 DWVQDGAQADTALHGHQYDLVLLDLGLPKLDGLQVLRQLRARKDATPVLVATARDAVHDR 77 Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEV 146 + D+G DD V KP E+LAR+ A+ RR + E G + + + R+ V G+ Sbjct: 78 IAGLDAGADDYVIKPYDMDELLARIRALTRRAAGHLDAVYEHGGVMLNPNTREASVNGQP 137 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L RE +L+ L+A G +++ QI +YG DE V N VE +I LRK KLG Sbjct: 138 VTLSGREWAVLQALLARPGATLSRQQIEDKLYGWGDE-VSSNAVEVYIHGLRK----KLG 192 Query: 207 FDPVDSKRFLGYSI 220 V + R LGY + Sbjct: 193 AAAVLNVRGLGYMV 206 >gi|116332987|ref|YP_794514.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116098334|gb|ABJ63483.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 233 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 4/163 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR H ++P+I ++ L + D+G DD + KP E+LAR+ I RR Sbjct: 64 MEVLRRIRKHDELPVIMMTARDYLGDKVTGLDNGADDYITKPFEIEELLARIRVIQRRTA 123 Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +T G + + + R + G+ L +RE +L +LM + G+ + ++ + Sbjct: 124 HQSGLDQTYHLGDLTLVTKTRQVDRAGDTIQLTQREYDLLLFLMQHPGQVFTRDELLDNV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G+ D ++NVV+ +I LR K+ + R +GYS+ Sbjct: 184 WGV-DFLGQQNVVDVYIGYLRNKIDVAAAPHLFHTVRGVGYSL 225 >gi|194015722|ref|ZP_03054338.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|194013126|gb|EDW22692.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 228 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 74/145 (51%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ + IR SQ+P++ ++ + + + G DD + KP RE+ AR+ RR Sbjct: 65 EVCQRIRQTSQIPILFLTARSYEEDRIRGLEIGADDYIMKPFSLRELAARIETTLRRIRG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L + +R + G I + DGR + E L RRE +L +L+ N+G+ ++ Q++ ++ Sbjct: 125 LSLKRSRIQFGDIEIDQDGRQVYIHQEPINLTRREFDLLMFLLLNQGQVFSREQLYQKLW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203 + V++HI LR KL+ Sbjct: 185 ESHSTSGSLRTVDTHIKTLRLKLKG 209 >gi|229544295|ref|ZP_04433354.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229325434|gb|EEN91110.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 227 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 7/191 (3%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 E LQS+ ED I L+ LE+ R +R + P+I I+ S+ + D G Sbjct: 36 EGLQSALEEDWDVILLDLMLPKLNGLEVCRRLRQEKETPVIMITARDSIMDRVSGLDHGA 95 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPL 149 DD + KP E+LAR+ AI+RR++ + + F D R + G+ L Sbjct: 96 DDYIVKPFAIEELLARLRAIFRRMEYAEPKKAALTTYKFRDLVLEKESRLVKKAGKTIEL 155 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +RE +L L+ N+ + + + + ++G ++ VE NVV+ +I LR K+ + Sbjct: 156 TKREYDLLLTLLENKNIVMTREALLNKVWG-YETEVETNVVDVYIRYLRNKIDTEGEDSY 214 Query: 210 VDSKRFLGYSI 220 + + R GY + Sbjct: 215 IQTVRGTGYVM 225 >gi|228474789|ref|ZP_04059520.1| transcriptional regulatory protein [Staphylococcus hominis SK119] gi|314935741|ref|ZP_07843093.1| DNA-binding response regulator [Staphylococcus hominis subsp. hominis C80] gi|228271452|gb|EEK12820.1| transcriptional regulatory protein [Staphylococcus hominis SK119] gi|313656306|gb|EFS20046.1| DNA-binding response regulator [Staphylococcus hominis subsp. hominis C80] Length = 224 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 90/180 (50%), Gaps = 4/180 (2%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 R D++ ++ + G EL ++++ Q+P+I ++ +L F SG DD V KP Sbjct: 45 RVDIAVVDIMMTGMDG--FELCQLLKDRYQLPVIMLTARDALSDKERAFVSGTDDYVTKP 102 Query: 103 IHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161 +E+L R+ A+ RR ++ + N+ E G + + + + V + LP +E ++L L Sbjct: 103 FEIKELLFRIRAVLRRYQINTQNKIEIGNVILNDEFMEVSVASKKMNLPTKEFQLLFLLC 162 Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + I I+G FD +E V+ HI +LR +L+ + + R GY ++ Sbjct: 163 THPRQIYTRESIIEKIWG-FDYTGDERTVDVHIKRLRTRLKKLEATIEIQTVRGQGYKVN 221 >gi|225631101|ref|ZP_03787828.1| two component transcriptional regulator [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591203|gb|EEH12358.1| two component transcriptional regulator [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 256 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 1/140 (0%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A +VP++ +S ++ G DD + KP H E+LAR+ AI RR K Sbjct: 67 LLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAIVRRTKGH 126 Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G I + D R EV+G+ L +E ++E L +G + K + +Y Sbjct: 127 PESVIKIGNININFDHRIVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFLNHLYNGL 186 Query: 182 DEAVEENVVESHISKLRKKL 201 DE +V+ + KLRKKL Sbjct: 187 DEPSNNKIVDVFMCKLRKKL 206 >gi|222150338|ref|YP_002559491.1| hypothetical protein MCCL_0088 [Macrococcus caseolyticus JCSC5402] gi|222119460|dbj|BAH16795.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 223 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 100/205 (48%), Gaps = 15/205 (7%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIE--------AFLIGKGEKVLELPRIIRAHSQVPLIGI 78 EGF F+ ++ S+ E ++ ++ ++ G +L I+ Q+P+I + Sbjct: 20 EGFLRHSFQVYVASNGDEAINLLDNESIDLCIVDIMMPGIDGFQLCEQIKQDYQLPVIML 79 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR 138 + +L F +G DD V KP E++ R AI +R + + + E G + + +D Sbjct: 80 TARDALGDKRIAFQAGSDDYVTKPFEIEEVIFRAQAILKRYEKAVEKVEFGKLIIDADSY 139 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 + ++ E LPR+E +L YL+ + K + Q+ I+G +D +E V+ H+ ++R Sbjct: 140 EVTMEDESLYLPRKEFELLYYLVRHYPKVATREQLIEEIWG-YDFDGDERTVDVHVKRIR 198 Query: 199 KKLRNKLGFDP---VDSKRFLGYSI 220 K+L FD + + R +GY + Sbjct: 199 KRLD---AFDSGVEIQTVRGVGYKV 220 >gi|83746136|ref|ZP_00943190.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551] gi|207722061|ref|YP_002252499.1| response regulator protein [Ralstonia solanacearum MolK2] gi|207741825|ref|YP_002258217.1| response regulator protein [Ralstonia solanacearum IPO1609] gi|83727102|gb|EAP74226.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551] gi|206587235|emb|CAQ17819.1| response regulator protein [Ralstonia solanacearum MolK2] gi|206593209|emb|CAQ60136.1| response regulator protein [Ralstonia solanacearum IPO1609] Length = 224 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 4/149 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETG 129 S VP++ ++ + + +G DD + KP RE++AR+ + RR +N + G Sbjct: 71 SAVPVMILTASGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNTPANAVELQCG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + R + G LP RE +LE LM G+ V+K + + ++GL D+A E Sbjct: 131 DLSYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFGLEDDASPE-A 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E +I +LRKKL + + + R LGY Sbjct: 190 IEIYIHRLRKKLEHSAA--TIVTLRGLGY 216 >gi|331088816|ref|ZP_08337726.1| hypothetical protein HMPREF1025_01309 [Lachnospiraceae bacterium 3_1_46FAA] gi|330407339|gb|EGG86842.1| hypothetical protein HMPREF1025_01309 [Lachnospiraceae bacterium 3_1_46FAA] Length = 226 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 7/164 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R +R + ++ +S + ++ D+G +D + KP H +E+ ARV ++ RR Sbjct: 60 MEILRELRKEDEETKVLILSARSQIADKIEGLDAGANDYMEKPFHLQELEARVRSLTRRK 119 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N E IR R + L R+E ILEYL+ N+G+ V++ ++ ++ Sbjct: 120 FIQKNVCLECNGIRFDIRERVAYAEENPVALTRKENGILEYLLLNQGRPVSQEELIEHVW 179 Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +V+ + H+S LR+KL+ LG+DP+ ++ GY I Sbjct: 180 ---DSSVDSFSGSIRVHMSSLRRKLKAGLGYDPIVNRIGEGYKI 220 >gi|126702213|gb|ABO26810.1| PmrA [Tatlockia micdadei] Length = 222 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 14/158 (8%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 + P+I ++ +++ + DSG DD + KP E+ ARV A+ RR S RA++ Sbjct: 71 NTTPVIILTARETVEDRIKGLDSGADDYMTKPFDLNELSARVRALVRR---SQGRADS-V 126 Query: 131 IRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 ++ + DP V + +PRRE +L+ L+ N G+ +++ Q+ +IYG +DE V Sbjct: 127 LQYRNVTLDPAAHSVYVDDVMINVPRREFALLQKLLENSGQVLSREQLMQSIYG-WDEDV 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + N +E HI LRKKL + + R +GY + N Sbjct: 186 DSNALEVHIHNLRKKLNANF----IRTIRGVGYMAEKN 219 >gi|293365004|ref|ZP_06611721.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|306829124|ref|ZP_07462314.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|307703252|ref|ZP_07640198.1| response regulator [Streptococcus oralis ATCC 35037] gi|291316454|gb|EFE56890.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|304428210|gb|EFM31300.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|307623327|gb|EFO02318.1| response regulator [Streptococcus oralis ATCC 35037] Length = 218 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 106/219 (48%), Gaps = 6/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++G D G E + + EE L+ + +V+ + + LE Sbjct: 4 LIVEDEEMIREGISDYLTDCG--YETIQAADGEEALEQFSSYEVALVLLDIQMPKLNGLE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR SQVP++ ++ + + + F S D + KP + RV AI++R + Sbjct: 62 VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYDT 121 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +V + + GE + +E IL+YL+ N G+ + ++QI A++ + D Sbjct: 122 GRIFSYKNTKVDFESYSASLAGEEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKVTD 181 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E + V++ +I K+LR KL D + + R +GY ++ Sbjct: 182 EVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216 >gi|126726434|ref|ZP_01742275.1| DNA-binding response regulator CtrA [Rhodobacterales bacterium HTCC2150] gi|126704297|gb|EBA03389.1| DNA-binding response regulator CtrA [Rhodobacterales bacterium HTCC2150] Length = 237 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ A + P++ +S + + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRL--AKVETPILILSGSDDTENKIKGFGFGADDYMTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + TG I V D + E + L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSIIHTGGIAVNLDAKTVEAHNKPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +YG DE E +++ I KLRKKL Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201 >gi|328542574|ref|YP_004302683.1| Two-component transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326412320|gb|ADZ69383.1| Two-component transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 228 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ + + P++ +S ++ + G DD + KP H E++AR+ AI Sbjct: 57 GYEVLRTLRVSKV--KTPILILSGLAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIV 114 Query: 117 RRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + TG +RV D + EV G+ L +E ++LE L +G + K + Sbjct: 115 RRSKGHAQSVIVTGDLRVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 174 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +YG DE E +++ I KLRKKL Sbjct: 175 HLYGGMDEP-ELKIIDVFICKLRKKL 199 >gi|228995903|ref|ZP_04155561.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229003520|ref|ZP_04161338.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228757758|gb|EEM06985.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228763875|gb|EEM12764.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 223 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 5/161 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + RI + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR Sbjct: 62 IQRIRNDKIETPVLFLTAKDSLEDRVKGLDFGGDDYLIKPFQAPELKARIRALLRRSGNL 121 Query: 123 NNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + I +F +D +V GE L ++ +LEYL+ N GK + + QIF ++G Sbjct: 122 TTKQTINYRGIELFGKDKDIQVDGEAIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 FD +VE ++ LRKKL G+ + + R +GY + Sbjct: 181 FDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYML 220 >gi|323439955|gb|EGA97670.1| two-component response regulator [Staphylococcus aureus O11] Length = 224 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 95/186 (51%), Gaps = 6/186 (3%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L R D++ ++ + G +L ++ +P+I ++ +L F SG DD Sbjct: 40 LLEKQRVDIAVVDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156 V KP +E++ R+ A+ RR +++N T G + + + +V + LP +E ++ Sbjct: 98 YVTKPFEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 157 Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 L +++A R K++ + QI I+G +D +E V+ HI +LR++L+ +++ R Sbjct: 158 L-FMLATRPKQIFTREQIIEKIWG-YDYGGDERTVDVHIKRLRQRLKKLNATLTIETVRG 215 Query: 216 LGYSID 221 GY ++ Sbjct: 216 QGYKVE 221 >gi|225860601|ref|YP_002742110.1| VncR, response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|298230065|ref|ZP_06963746.1| VncR, response regulator [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255464|ref|ZP_06979050.1| VncR, response regulator [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502394|ref|YP_003724334.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|225728327|gb|ACO24178.1| VncR, response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|298237989|gb|ADI69120.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|327390338|gb|EGE88679.1| response regulator [Streptococcus pneumoniae GA04375] Length = 218 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 109/225 (48%), Gaps = 18/225 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++G D G E + + +E L+ + +V+ + + LE Sbjct: 4 LIVEDEEMIREGVSDYLTDCG--YETIEAADGQEALEQFSSYEVALVLLDIQMPKLNGLE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 62 VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRY--- 118 Query: 123 NNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +TG I + D + + G+ P+ +E IL+YL+ N G+ + ++QI A Sbjct: 119 ---YDTGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDA 175 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ DE + V++ +I K+LR KL D + + R +GY ++ Sbjct: 176 VWKATDEVPFDRVIDVYI----KELRKKLDLDCIFTVRNVGYKLE 216 >gi|264680102|ref|YP_003280011.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|262210617|gb|ACY34715.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] Length = 209 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 14/194 (7%) Query: 36 EWLQSSAREDVS----AIEAFLIGKGEKVLELPRIIRA----HSQVPLIGISDYPSLQTT 87 +W+Q A+ D + + L+ G L+ +++R P++ + ++ Sbjct: 18 DWVQDGAQADTALYGHQYDLVLLDLGLPKLDGLQVLRQLRARKDATPVLVATARDAVHDR 77 Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEV 146 + D+G DD V KP E+LAR+ A+ RR + E G + + + R+ V G+ Sbjct: 78 IAGLDAGADDYVIKPYDMDELLARIRALTRRAAGHLDAVYEHGGVMLNPNTREASVNGQP 137 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L RE +L+ L+A G +++ QI +YG DE V N VE +I LRK KLG Sbjct: 138 VTLSGREWAVLQALLARPGATLSRQQIEDKLYGWGDE-VSSNAVEVYIHGLRK----KLG 192 Query: 207 FDPVDSKRFLGYSI 220 V + R LGY + Sbjct: 193 AAAVLNVRGLGYMV 206 >gi|163854400|ref|YP_001628698.1| two-component response regulator [Bordetella petrii DSM 12804] gi|163258128|emb|CAP40427.1| two-component response regulator [Bordetella petrii] Length = 220 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 12/185 (6%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100 DV A +A ++ G VL+ ++R A +P++ ++ S + D+G DD + Sbjct: 41 DVEAFDAVVLDLGLPVLDGLTVLRRWRAAGRNMPVLILTARDSWHEKVAGIDAGADDYLA 100 Query: 101 KPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159 KP H E+LARV A+ RR V ++ GP+ + + + G L E ++L Sbjct: 101 KPFHMEELLARVRALIRRNSVHASAEWRCGPLMLDTRQARVTLDGAPITLTSHEFKVLAM 160 Query: 160 LMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 LM + G+ V++ Q+ +Y FD + N ++ I +LRKKL D +++ R LGY Sbjct: 161 LMQHAGEVVSRQQLVEHLYAQDFDR--DSNTIDVFIGRLRKKLPP----DTIETVRGLGY 214 Query: 219 SIDWN 223 + N Sbjct: 215 RLAGN 219 >gi|154502659|ref|ZP_02039719.1| hypothetical protein RUMGNA_00472 [Ruminococcus gnavus ATCC 29149] gi|153796542|gb|EDN78962.1| hypothetical protein RUMGNA_00472 [Ruminococcus gnavus ATCC 29149] Length = 246 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 7/164 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R +R + ++ +S + ++ D+G +D + KP H +E+ ARV ++ RR Sbjct: 80 MEILRELRKEDEETKVLILSARSQIADKIEGLDAGANDYMEKPFHLQELEARVRSLTRRK 139 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N E IR R + L R+E ILEYL+ N+G+ V++ ++ ++ Sbjct: 140 FIQKNVCLECNGIRFDIRERVAYAEENPVALTRKENGILEYLLLNQGRPVSQEELIEHVW 199 Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +V+ + H+S LR+KL+ LG+DP+ ++ GY I Sbjct: 200 ---DSSVDSFSGSIRVHMSSLRRKLKAGLGYDPIVNRIGEGYKI 240 >gi|163850257|ref|YP_001638300.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218528815|ref|YP_002419631.1| transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240137328|ref|YP_002961797.1| Cell cycle transcriptional regulator ctrA (Response regulator sokA) [Methylobacterium extorquens AM1] gi|254559507|ref|YP_003066602.1| cell cycle transcriptional regulator ctrA [Methylobacterium extorquens DM4] gi|163661862|gb|ABY29229.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218521118|gb|ACK81703.1| two component transcriptional regulator, winged helix family [Methylobacterium chloromethanicum CM4] gi|240007294|gb|ACS38520.1| Cell cycle transcriptional regulator ctrA (Response regulator sokA) [Methylobacterium extorquens AM1] gi|254266785|emb|CAX22584.1| Cell cycle transcriptional regulator ctrA (Response regulator sokA) [Methylobacterium extorquens DM4] Length = 233 Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 3/144 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R A + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVSGSRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRN 203 DE E +++ I KLRKKL N Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLAN 203 >gi|218509328|ref|ZP_03507206.1| putative two-component response regulator protein [Rhizobium etli Brasil 5] Length = 218 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 78/151 (51%), Gaps = 2/151 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-E 127 A +Q P++ ++ ++ + D+G DD + KP H+ E+ AR+ A+ RR V++ E Sbjct: 69 AGAQTPVLVLTARGAIDERIAGLDAGADDYLAKPFHNGELTARIRALIRRSPVTSMPILE 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 +++ R G L E+ +LE LM N GK VAK++I A + F + Sbjct: 129 FAALKLDVASRQVTCAGHDVALAPSEKGLLELLMRNGGKVVAKSKIEHA-FSEFGDERSS 187 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 N VE +S+LRKKL +++ R +GY Sbjct: 188 NAVELAVSRLRKKLEGHKTRLSIETIRGVGY 218 >gi|15890951|ref|NP_356623.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|15159265|gb|AAK89408.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 217 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE + L + + P+I ++ + + + ++G DD V KP E+ AR+ A+ Sbjct: 57 GEGITLLQSLRKRDDATPVIILTAHDQVSDRIAGLNAGADDYVVKPFDLNELSARMLAVS 116 Query: 117 RRLKVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + + P I + R+ V G L RE +LE L+ + G V+K Q+ Sbjct: 117 RRYEGRSAPVIRLPGIEINQVARNITVDGTAQTLSAREWAVLEKLVEHPGAVVSKAQLHD 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y F +E N VE +IS+LRK K+G D V++ R +GY+I Sbjct: 177 TLYE-FGAEIESNTVEVYISRLRK----KIGHDRVETVRGVGYTI 216 >gi|134291387|ref|YP_001115156.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134576|gb|ABO58901.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 241 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 22/212 (10%) Query: 22 DGVSLEGFN-----SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLI 76 DG++ EGF +L+ +S D+ ++ + G V + + R VP++ Sbjct: 18 DGLAKEGFAVDWCATLDLATRAFASTPYDLVLLD-LGMPDGNGVTFVKALRRGGHTVPVL 76 Query: 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAET 128 I+ SL + DSG DD + KP RE+ AR A+ RR L V+N +T Sbjct: 77 IITARSSLDDRVIGLDSGGDDYLVKPFELRELTARCRALLRRPGACLGTTLAVANLELDT 136 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 GR+ V G V P+P RE +LE LM G V K + ++Y L E V N Sbjct: 137 A-------GREVRVAGRVVPVPPRELGLLECLMRRVGHVVTKGALEDSLYALEAE-VTPN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E+ +S+LR++L + + +GY + Sbjct: 189 ALEAVVSRLRRRLAAAHAQVALHTAHGIGYML 220 >gi|288818001|ref|YP_003432348.1| two-component response regulator [Hydrogenobacter thermophilus TK-6] gi|288787400|dbj|BAI69147.1| two-component response regulator [Hydrogenobacter thermophilus TK-6] Length = 216 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I + + P++ ++ L F +G DD + KP +E+L R+ A+YRR Sbjct: 63 LLKIRQGDKKTPVLVLTAKSRLDDKEKCFLAGADDYITKPFEPKELLLRLKALYRRKLGG 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N G + V + V G+V L R++ IL+ L+ NRG+ V+ +I + ++G D Sbjct: 123 NVIVNLGGVEVDLERELVSVDGKVINLTRKDWLILKCLVENRGRFVSSEEILNYVWG--D 180 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V + VV +HI LRK L GF + + + GY I+ Sbjct: 181 APVGDEVVRAHIKNLRKLLPE--GF--ITTMKGRGYKIE 215 >gi|328544198|ref|YP_004304307.1| Two component transcriptional regulator, winged helix family [polymorphum gilvum SL003B-26A1] gi|326413941|gb|ADZ71004.1| Two component transcriptional regulator, winged helix family [Polymorphum gilvum SL003B-26A1] Length = 219 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 7/156 (4%) Query: 67 IRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +RA V P++ ++ + ++ ++G DD + KP E+ AR+ ++ RR + N Sbjct: 66 LRARGDVTPVMILTALDQVSDRIEGLNAGADDYLVKPFDLAELSARIGSVARRYSGNPNP 125 Query: 126 AET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 T GP+ + R G+ L RE + E ++ G+ ++KTQ+ +Y FD Sbjct: 126 IVTHGPLEIDLAARSIRRDGKPVQLTAREWALFEAFVSRPGQLLSKTQLEEKLYA-FDAE 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 VE N +E H+S+LRK KLG ++++R LGY + Sbjct: 185 VESNTIEVHVSRLRK----KLGPQVIETERGLGYRL 216 >gi|90417639|ref|ZP_01225551.1| two-component response regulator, heavy metal response [Aurantimonas manganoxydans SI85-9A1] gi|90337311|gb|EAS50962.1| two-component response regulator, heavy metal response [Aurantimonas manganoxydans SI85-9A1] Length = 225 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 86/165 (52%), Gaps = 6/165 (3%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L + R +R+ + P+I ++ L ++ ++G DD + KP E++AR+ A+ RR Sbjct: 60 LSIVRALRSSGRDTPVIFLTSVSGLDDRVEGLEAGADDYLVKPFAFSELMARLNALARRS 119 Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + A + G + + R +G+ L RE R+LEY+M NRG+ + +T + + Sbjct: 120 PMRREEAVLKVGDLEMNLIARTVRREGQSVDLQPREFRLLEYMMRNRGRVLTRTMLLERV 179 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + FD NVVE+H+S+LR K+ + + + R GY ++ Sbjct: 180 WDFHFDP--RTNVVETHVSRLRGKVDRPFSTEMIKTIRGSGYVLN 222 >gi|308751601|gb|ADO45084.1| two component transcriptional regulator, winged helix family [Hydrogenobacter thermophilus TK-6] Length = 224 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I + + P++ ++ L F +G DD + KP +E+L R+ A+YRR Sbjct: 71 LLKIRQGDKKTPVLVLTAKSRLDDKEKCFLAGADDYITKPFEPKELLLRLKALYRRKLGG 130 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N G + V + V G+V L R++ IL+ L+ NRG+ V+ +I + ++G D Sbjct: 131 NVIVNLGGVEVDLERELVSVDGKVINLTRKDWLILKCLVENRGRFVSSEEILNYVWG--D 188 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V + VV +HI LRK L GF + + + GY I+ Sbjct: 189 APVGDEVVRAHIKNLRKLLPE--GF--ITTMKGRGYKIE 223 >gi|229056343|ref|ZP_04195761.1| Two-component response regulator [Bacillus cereus AH603] gi|228721011|gb|EEL72553.1| Two-component response regulator [Bacillus cereus AH603] Length = 228 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 7/151 (4%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAET 128 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR L Sbjct: 76 ETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRSGSLTTKQTICYK 135 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD Sbjct: 136 G-IELFGKDKDAQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVA 193 Query: 189 VVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +VE ++ LRKKL G+ + + R +GY Sbjct: 194 IVEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 223 >gi|167040839|ref|YP_001663824.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|300914874|ref|ZP_07132190.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307723892|ref|YP_003903643.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|166855079|gb|ABY93488.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|300889809|gb|EFK84955.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307580953|gb|ADN54352.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] Length = 224 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 18/216 (8%) Query: 10 LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L +GY L ++G + LE FN+ +D+S I ++ L + IR Sbjct: 21 LENNGYEVLVAENGKIGLEYFNN-----------NKDISIILLDIMLPDISGWSLLKTIR 69 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NR 125 S+VP++ I+ L F+ G DD V KP +E++ARV AI R ++ + Sbjct: 70 EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTYGASEEEGK 129 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E I + R+ V GE L +E +L+ L+ N+GK V++ + + ++G +D Sbjct: 130 TEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG-YDFYG 188 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V++HI +LR+KL K + + +GY +D Sbjct: 189 DLRTVDTHIKQLREKLGEKRKL--IKTVWGIGYKLD 222 >gi|329847724|ref|ZP_08262752.1| phosphate regulon transcriptional regulatory protein PhoB [Asticcacaulis biprosthecum C19] gi|328842787|gb|EGF92356.1| phosphate regulon transcriptional regulatory protein PhoB [Asticcacaulis biprosthecum C19] Length = 229 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R +R+ S +P++ ++ + D+G DD V KP E LAR+ A+ R Sbjct: 62 IEVCRRLRSASPTRNLPIVMLTARSEESDRIRGLDTGADDYVVKPFSMVEFLARIRAVLR 121 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R++ +S+++ E G I V + G L E ++L++ M + ++ Q+ Sbjct: 122 RIRPGLSDDKVEFGEISVDRLSHRVQRCGRDIHLGPTEYKLLDHFMQYPKRVFSREQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++G D VE V+ HI +LRK L +DP+ + R GYS+D Sbjct: 182 AVWG-NDVYVEARTVDVHIGRLRKALNKGDEYDPIRTVRSAGYSLD 226 >gi|320540374|ref|ZP_08040024.1| putative DNA-binding response regulator in two-component regulatory system with PhoQ [Serratia symbiotica str. Tucson] gi|320029305|gb|EFW11334.1| putative DNA-binding response regulator in two-component regulatory system with PhoQ [Serratia symbiotica str. Tucson] Length = 223 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 98/191 (51%), Gaps = 6/191 (3%) Query: 33 EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFF 91 E + +LQ A D++ ++ L+ GE L L R RAH ++P++G++ S Q + Sbjct: 35 EADYFLQEHA-PDIAIVD--LVLPGEDGLSLIRRWRAHQMKLPILGLTARESWQDKVAVL 91 Query: 92 DSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 ++G DD V KP H E++AR+ A+ RR +++ P ++ R+ V + L Sbjct: 92 EAGADDYVTKPFHLEEVIARIQALMRRNSGLASQIIVLPPFQIDLSRRELSVNEQNIKLT 151 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 E I+E L+ N GK V+K + +Y E E + ++ + +LRKK++ + D + Sbjct: 152 AFEYTIIETLIRNAGKVVSKDSLMLQLYP-DAELRESHTIDVLMGRLRKKVQAEYPQDVI 210 Query: 211 DSKRFLGYSID 221 + R GY D Sbjct: 211 TTVRGQGYRFD 221 >gi|296134131|ref|YP_003641378.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032709|gb|ADG83477.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 224 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 80/158 (50%), Gaps = 7/158 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR SQVP+I ++ L FD G D+ + KP + + AR+ A+ RR V Sbjct: 66 VCREIRKSSQVPIIMLTARGEESDELFGFDLGADEYIAKPFSLKILAARIQALLRR--VQ 123 Query: 123 NNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 NNR + + GR V GE L +E +L YL N G+ +++ QI +A++ Sbjct: 124 NNRTVRSFDGLEIDEQGRYVYVDGEPVDLSPKEFELLLYLTENAGRALSREQILNAVWD- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +D + V++HI KLR KL K + + R LGY Sbjct: 183 YDYFGDVRTVDTHIKKLRLKLGEKSYL--IQTVRGLGY 218 >gi|332204624|gb|EGJ18689.1| response regulator [Streptococcus pneumoniae GA47901] Length = 218 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 18/225 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++G D G E + + +E L + +V+ + + LE Sbjct: 4 LIVEDEEMIREGVSDYLTDCG--YETIEAADGQEALDQFSSYEVALVLLDIQMPKLNGLE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 62 VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRY--- 118 Query: 123 NNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +TG I + D + + G+ P+ +E IL+YL+ N G+ + ++QI A Sbjct: 119 ---YDTGRIFSYKDTKVDFESYSASIAGQEVPINAKELEILDYLVKNEGRALTRSQIIDA 175 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ DE + V++ +I K+LR KL D + + R +GY ++ Sbjct: 176 VWKATDEVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216 >gi|311029174|ref|ZP_07707264.1| two component transcriptional regulator, winged helix family protein [Bacillus sp. m3-13] Length = 225 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 98/210 (46%), Gaps = 8/210 (3%) Query: 16 IALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 +A F + + EGFN S + E L + +ED I L+ G +E+ R IRA + Sbjct: 13 LARFIELELQYEGFNVATSYDGREGLDLALKEDWDIILLDLMLPGLSGMEVCRRIRAAKE 72 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128 P+I ++ S+ + DSG DD ++KP E+LAR+ A++RR++ A Sbjct: 73 TPIIMLTARDSVMDKVSGLDSGADDYMSKPFAIEELLARIRALFRRMEGKKEEAHNILSF 132 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 ++V D R E L +RE +L M N + + + + ++ L A E N Sbjct: 133 RELKVDLDARTVTRMEEQIELTKREFDLLVVFMTNINRVLTRELLLDKVWELGSYA-ETN 191 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VV+ ++ LR K+ + + R GY Sbjct: 192 VVDVYVRYLRNKIDKPSEESYIQTVRGTGY 221 >gi|169824596|ref|YP_001692207.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|302380339|ref|ZP_07268809.1| response regulator receiver domain protein [Finegoldia magna ACS-171-V-Col3] gi|303235188|ref|ZP_07321807.1| response regulator receiver domain protein [Finegoldia magna BVS033A4] gi|167831401|dbj|BAG08317.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|302311829|gb|EFK93840.1| response regulator receiver domain protein [Finegoldia magna ACS-171-V-Col3] gi|302493675|gb|EFL53462.1| response regulator receiver domain protein [Finegoldia magna BVS033A4] Length = 229 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 113/233 (48%), Gaps = 21/233 (9%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KG 57 + V+ D++ +VK I L D+ L+ +N + E ++ + I+ FL+ +G Sbjct: 4 IMVVDDEKDIVKAIEIYLKTDNYNVLKAYNGFDALELMEKNK------IDLFLVDIMMEG 57 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LEL + IR S P+I +S L + + G DD + KP E+LAR+ + R Sbjct: 58 MDGLELTQKIREVSNAPIIILSAKSELNDKVMGLNLGADDYITKPFDAVELLARIKSCLR 117 Query: 118 RLKVSNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 RL++S +++ G +FS GR + + GE L E I+ L+ N+G Sbjct: 118 RLELSKDKSLNG--NIFSAGRLTINDDKKEVLIDGEEIKLTPYEYGIILLLLKNKGIVFT 175 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +I+ ++ V++ +V HIS+LR+K+ N D + S +GY I+ Sbjct: 176 SEEIYENVWEAPPYDVKK-IVSVHISRLREKVEINPRRPDLIKSVYGMGYKIE 227 >gi|89096575|ref|ZP_01169467.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088590|gb|EAR67699.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 226 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 3/144 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE R IR S VP+I ++ + FD G DD V KP R +LARV A++RR + Sbjct: 61 LETCRKIREFSNVPIIMLTARTDNLDMIKGFDCGADDYVTKPFDERVLLARVNALFRRQQ 120 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + E G ++ D + +G+ L +E +LE LM + + + Q+ + + Sbjct: 121 IQHGAKEVIRGDFKLDMDSYTLKYKGKAVSLTLKEFLLLETLMKHPERVYTRDQLLAVAW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLR 202 + + + E V+SH+ LR+KL+ Sbjct: 181 DI-NASTEIRTVDSHVRNLREKLK 203 >gi|300854912|ref|YP_003779896.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300435027|gb|ADK14794.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 85/163 (52%), Gaps = 4/163 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R +S+VP+I ++ + + D G DD + KP E+LAR+ ++ + Sbjct: 63 MEVLRRLRQNSEVPVIMLTAKDEIMDKVMGLDIGADDYITKPFAIEELLARIRVTFKHKR 122 Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V+ +++ E G +++ EV L + E +L+YLM N+ +++ I + Sbjct: 123 VTPDKSGIIEIGKLKLNVSKYLTTYDDEVVELTKTEFDLLKYLMVNKNIVLSRENILEKV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D + NVV+ +I LR K+ ++ + + R +GY + Sbjct: 183 WG-YDYTGDTNVVDVYIRYLRSKIDDRFNHKFIYTVRGVGYQL 224 >gi|225377290|ref|ZP_03754511.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM 16841] gi|225210821|gb|EEG93175.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM 16841] Length = 223 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 32/212 (15%) Query: 34 FEEWLQSSAREDVSA---IEAFLIGKGEK----VLE--LPRI--------IRAHSQVPLI 76 + +LQ + E A +EA + GE+ VL+ LP+I IR S VP+I Sbjct: 17 LQNFLQEAGYEVAVANDGVEALSLFAGERYDLIVLDIMLPKIDGYGVCELIRKQSDVPII 76 Query: 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-------G 129 ++ + + D VDD + KP +L ++AA+ RR SN + G Sbjct: 77 MLTALSGEEDQIKGLDLQVDDYITKPFSMPVLLRKIAAVLRR---SNRETDEKYQIITYG 133 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + D V G F L ++E IL L+ ++G+ + + + ++ +D +E V Sbjct: 134 NLLLNCDSYTATVDGANFELTQKEFEILRELLTHQGRILTRQNLLDKLWR-YDFYGDERV 192 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V++HI LRK KLG D + + R +GY +D Sbjct: 193 VDTHIKNLRK----KLGIDFIQTIRGVGYKVD 220 >gi|222475446|ref|YP_002563863.1| transcriptional activator protein (czcR) [Anaplasma marginale str. Florida] gi|222419584|gb|ACM49607.1| transcriptional activator protein (czcR) [Anaplasma marginale str. Florida] Length = 292 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130 +VP++ +S S+ + G DD + KP H E+LAR+ AI RR + + G Sbjct: 77 KVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAIVRRTRGHPESIVRVGN 136 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I + D + E GE+ L ++E ++E L + G + K S +Y DE ++ ++ Sbjct: 137 ISINLDHKCVECNGEIIHLTKKEYGMIELLSSRLGTVLTKEMFLSHLYRELDEPSDDKII 196 Query: 191 ESHISKLRKKLR 202 + + KLRKKL+ Sbjct: 197 DVFMCKLRKKLK 208 >gi|188580015|ref|YP_001923460.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179343513|gb|ACB78925.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 233 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 3/144 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R A + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVSGSRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRN 203 DE E +++ I KLRKKL N Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLAN 203 >gi|313107372|ref|ZP_07793563.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|310880065|gb|EFQ38659.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 226 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D L+ G +A G++++ S + L AR DV ++ L + + + Sbjct: 3 VLLTEDDDLIASGIVAGLNAQGLTVDRVASAADTQALLQVARFDVLVLDLGLPDE-DGLR 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 L R+ + +P++ ++ ++ + +G DD + KP RE+ AR+ + RR Sbjct: 62 LLQRLRQQGVDLPVLVLTARDAVTDRVAGLQTGADDYLLKPFDLRELGARLHTLQRRSAG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N E G + R+ + G L RRE+ +L+ L+ NRG+ ++ Q+ ++YG Sbjct: 122 RCVNVIEHGRLSYDPSTRETWLDGRPVELSRREQALLQALLNNRGRILSGEQLKDSVYGF 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE VE N + HI LR+KL N + V + R LGY + Sbjct: 182 GDE-VESNALNVHIHHLRRKLGNAI----VQTVRGLGYRL 216 >gi|268608799|ref|ZP_06142526.1| DNA-binding response regulator [Ruminococcus flavefaciens FD-1] Length = 225 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 78/156 (50%), Gaps = 3/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125 +R S P+I IS ++T L+ G DD + KP E++ R+ + RR++ + + Sbjct: 68 LRKISDTPVIVISAKSMMETKLEVLRLGADDYIIKPFDINEVIVRIEVVLRRVQTTKEKD 127 Query: 126 -AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E+G +++ E +G+ L +E +LE M N K K +++ +++ Sbjct: 128 VLESGGLKLILTENRAEYEGKPVQLTAKEMSLLELFMKNPKKTYTKAELYESVWNDV-YY 186 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E+N + H+S LR KL+ G + +++ +GY + Sbjct: 187 YEDNTINVHVSNLRNKLKKVSGREHIETVWGIGYRL 222 >gi|312141110|ref|YP_004008446.1| two component system response regulator [Rhodococcus equi 103S] gi|311890449|emb|CBH49767.1| two component system response regulator [Rhodococcus equi 103S] Length = 226 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 21/169 (12%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR ++N A Sbjct: 64 LRAKSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR--GADNEA 121 Query: 127 ET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 T GP+R+ + V G+ LP +E +LEYL+ N G+ + + Q+ + Sbjct: 122 ATDVDDGVLAAGPVRMDVERHLVHVNGDPVTLPLKEFDLLEYLLRNSGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 +G D + ++ H+ +LR K+ DP K R LGY ++ Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEG----DPGKPKHLVTVRGLGYKLE 225 >gi|291550471|emb|CBL26733.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 229 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 108/214 (50%), Gaps = 22/214 (10%) Query: 2 FVLIDD----RALVKD-----GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52 +++DD R LVKD GY+ L DG +E + L +E+ +D++ I Sbjct: 6 ILVVDDESRMRKLVKDFLTREGYMVLEAGDG--MEAMD-LFYED-------KDIALIILD 55 Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 ++ ++ R +R S+VP+I ++ + L F+ GVD+ ++KP + ++ARV Sbjct: 56 VMMPKMDGWQVCREVRETSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARV 115 Query: 113 AAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 AI RR V N+ E G I + ++ G L +E +L Y + N+G +++ Sbjct: 116 NAILRRTLGAVGNDSLEAGGITIDKSAHIVKIDGTPVELSYKEFELLTYFIENQGIALSR 175 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 +I + ++ +D + +++H+ KLR KL +K Sbjct: 176 EKILNNVWN-YDYFGDARTIDTHVKKLRSKLGDK 208 >gi|302875105|ref|YP_003843738.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307690270|ref|ZP_07632716.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577962|gb|ADL51974.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 224 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 3/151 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127 + +P++ I+ S + F G DD + KPI+ E++ RVAA+ RR K VS ++ + Sbjct: 70 SQYNMPILMITARESYEDKEKGFLFGADDYMVKPINLNEMVLRVAALLRRSKIVSEHKLQ 129 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G I + D + V+ LP++E +L L++ K + Q+ I+G+ D ++E Sbjct: 130 IGDIVLNYDTLSITTKDTVYELPKKEFYLLFKLLSYPKKIFTRQQLMDEIWGM-DVDIDE 188 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+SHI KLRKK + F + + R LGY Sbjct: 189 RTVDSHIKKLRKKFEHIDEFKII-TIRGLGY 218 >gi|16520025|ref|NP_444145.1| transcription regulator of late flavonoid-inducible functions TtsI [Sinorhizobium fredii NGR234] gi|2500753|sp|P55701|Y4XI_RHISN RecName: Full=Probable transcriptional regulatory protein y4xI gi|2182717|gb|AAB91932.1| transcription regulator of late flavonoid-inducible functions TtsI [Sinorhizobium fredii NGR234] Length = 226 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 7/208 (3%) Query: 19 FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIRAHS-QVPLI 76 GD G +++ +LE SA ++ +E L G G L+ R +R+ VP + Sbjct: 18 LGDGGFAVDVVGTLEQASSAFFSASYEILLLELVLPDGDG---LDWLRQLRSDGYSVPAV 74 Query: 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFS 135 +S L+ + F+SG DD + KP+ E++AR+ A+ RR +++ E G + Sbjct: 75 IMSRLDDLEKRISVFNSGADDFLRKPVSTDELIARMRALLRRSTQITCPIIEFGNLHFDP 134 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 GR V G + RRE ILE+L+ G+ V + ++ +Y F++ V N +E+ I Sbjct: 135 IGRQVSVDGHPLMIARRELCILEHLLNRAGRIVPRARLEDQLYS-FNDEVSGNALEAGIY 193 Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +LR L + + R +GY+++ Sbjct: 194 RLRGYLSRSGATLRIRTVRGIGYTLELT 221 >gi|88854568|ref|ZP_01129235.1| two component transcriptional regulator, winged helix family protein [marine actinobacterium PHSC20C1] gi|88816376|gb|EAR26231.1| two component transcriptional regulator, winged helix family protein [marine actinobacterium PHSC20C1] Length = 241 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 2/160 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI + VP++ ++ ++T ++ D+G DD + KP H E+LARV A+ RR + Sbjct: 73 RIRELDTNVPILMLTALDGMRTKVEGLDAGADDYLVKPFHLVELLARVRALLRRSPQAQA 132 Query: 125 RAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 T + + + R E G L +E +LEYLM N G+ V+ T++ + E Sbjct: 133 PVLTVRGVALDASTRTAERDGRRIQLTAKEFAVLEYLMRNAGRIVSSTELIDHAWDSNYE 192 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 NVV+++I LR+KL D ++++R GY I+ + Sbjct: 193 GF-SNVVQTYIRYLRQKLTAGGEPDVIETRRGSGYVIEQS 231 >gi|254995251|ref|ZP_05277441.1| transcriptional activator protein (czcR) [Anaplasma marginale str. Mississippi] gi|255003432|ref|ZP_05278396.1| transcriptional activator protein (czcR) [Anaplasma marginale str. Puerto Rico] gi|255004551|ref|ZP_05279352.1| transcriptional activator protein (czcR) [Anaplasma marginale str. Virginia] Length = 292 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130 +VP++ +S S+ + G DD + KP H E+LAR+ AI RR + + G Sbjct: 77 KVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAIVRRTRGHPESIVRVGN 136 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I + D + E GE+ L ++E ++E L + G + K S +Y DE ++ ++ Sbjct: 137 ISINLDHKCVECNGEIIHLTKKEYGMIELLSSRLGTVLTKEMFLSHLYRELDEPSDDKII 196 Query: 191 ESHISKLRKKLR 202 + + KLRKKL+ Sbjct: 197 DVFMCKLRKKLK 208 >gi|254787196|ref|YP_003074625.1| BaeR family transcriptional regulator [Teredinibacter turnerae T7901] gi|237684514|gb|ACR11778.1| transcriptional regulatory protein BaeR [Teredinibacter turnerae T7901] Length = 232 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 17/216 (7%) Query: 16 IALFGDDGVSLEGF------NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 +AL D + GF N LE E WL S+ D+ ++ L GK L++ R +R Sbjct: 14 LALLMRDYLLAAGFHCEIIGNGLEVERWL-STNTADIILLDLMLPGKNG--LDICRELRT 70 Query: 70 HSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +Q +P+I ++ L + G DD V KP REI+ARV A+ RR++ + Sbjct: 71 QAQFKTLPIIMVTAKVEEIDRLLGLELGADDYVCKPFSPREIVARVKAVLRRVQQPQEQL 130 Query: 127 E---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + +++ + + + G + L E + + L +G+ ++ I IY + Sbjct: 131 QDSASQAVQLHENSQQVSISGSMIELTTIEFCLFKLLYTEQGRIFSRQYIMDNIYSDY-R 189 Query: 184 AVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGY 218 V + V+SHI KLRKK++ G + + S GY Sbjct: 190 VVSDRTVDSHIKKLRKKMQEADPGLELIHSVYGAGY 225 >gi|229011982|ref|ZP_04169162.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048] gi|229060400|ref|ZP_04197766.1| Two-component response regulator vanRB [Bacillus cereus AH603] gi|229133551|ref|ZP_04262378.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196] gi|229167559|ref|ZP_04295297.1| Two-component response regulator vanRB [Bacillus cereus AH621] gi|228616121|gb|EEK73208.1| Two-component response regulator vanRB [Bacillus cereus AH621] gi|228649951|gb|EEL05959.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196] gi|228718990|gb|EEL70607.1| Two-component response regulator vanRB [Bacillus cereus AH603] gi|228749396|gb|EEL99241.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048] Length = 214 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 7/163 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 E+ ++IR+ S VP+I ++ + + FD G+DD + KP ++ RV A+ RR Sbjct: 56 FEVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSY 115 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K NN +R+ D V L +E IL+ L N K + + I ++ Sbjct: 116 DKNVNNHLVFKEVRIDVDAYRVYVNDVEILLTTKEFEILQLLFQNERKVLTRENIVEKVW 175 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +D E ++++HI LRK KL + + + +GY ID Sbjct: 176 G-YDYFGETRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 213 >gi|291550513|emb|CBL26775.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 224 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 8/169 (4%) Query: 57 GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 GE LE+ + ++ S+ +P+I ++ S + DSG DD V KP E+++R+ Sbjct: 55 GEDGLEILKKLKNSSKTKDIPVIMVTAKGSEYDKVVGLDSGADDYVTKPFGMMELISRIK 114 Query: 114 AIYRRLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A+ RR ++ + G I + + + +V GE L +E +LE LM N+G + + Sbjct: 115 AVLRRSGKQQDKTKLSVGGISLDTKKHEVKVDGEQVVLTLKEFELLEKLMRNQGIVLTRD 174 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Q+ + I+G +D E V+ HI LR+KL + V + R +GY I Sbjct: 175 QLLTEIWG-YDFDGETRTVDVHIRTLRQKLGEQGSL--VKTVRGVGYRI 220 >gi|56417080|ref|YP_154154.1| transcriptional activator protein [Anaplasma marginale str. St. Maries] gi|56388312|gb|AAV86899.1| transcriptional activator protein [Anaplasma marginale str. St. Maries] Length = 290 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 1/132 (0%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130 +VP++ +S S+ + G DD + KP H E+LAR+ AI RR + + G Sbjct: 75 KVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAIVRRTRGHPESIVRVGN 134 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I + D + E GE+ L ++E ++E L + G + K S +Y DE ++ ++ Sbjct: 135 ISINLDHKCVECNGEIIHLTKKEYGMIELLSSRLGTVLTKEMFLSHLYRELDEPSDDKII 194 Query: 191 ESHISKLRKKLR 202 + + KLRKKL+ Sbjct: 195 DVFMCKLRKKLK 206 >gi|24372213|ref|NP_716255.1| DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24346128|gb|AAN53700.1|AE015509_5 DNA-binding response regulator [Shewanella oneidensis MR-1] Length = 224 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 79/150 (52%), Gaps = 9/150 (6%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----YRRLKVSNNRAET 128 P+I ++ ++ F++G DD + KP H +E+LAR+ A+ + RL N + Sbjct: 73 TPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAHGRLNNPNKQLSY 132 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + + V +++ L E R+L+ + + K ++K Q+ +Y FD+ E N Sbjct: 133 GGVTLDEAEQTVSVGEQLYELTAMEFRLLKIFLMSPKKLLSKAQLTDKLYQ-FDDEKESN 191 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VVE +++ LRK KLG ++++R GY Sbjct: 192 VVEVYVTHLRK----KLGKTAIETRRGQGY 217 >gi|37526697|ref|NP_930041.1| DNA-binding transcriptional regulator PhoP [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786129|emb|CAE15181.1| Two-component response regulator PhoP [Photorhabdus luminescens subsp. laumondii TTO1] Length = 222 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 105/222 (47%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L++ D G ++ + + ++ + D++ ++ L GE L Sbjct: 3 ILIVEDNMLLRHHLTVQLRDTGHLVDAAANAKEADYYLVESEPDIAIVDLGL--PGEDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R R + +P++ ++ S Q + D+G DD V KP H EI+AR+ A+ RR Sbjct: 61 SLIRRWRQKDEKLPILVLTARESWQEKVTVLDAGADDYVTKPFHLEEIIARMQALLRRNN 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + E P ++ ++ V GE L E RI+E LM N K V K + +Y Sbjct: 121 GLVSQIIEFPPFKIDLSRKEFTVYGESVKLTAFEYRIIEILMCNSDKVVTKESLMRQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E + ++ I +LRKK+ + ++ + + R GY D Sbjct: 181 -DAELREGHSIDVLIGRLRKKILDIWPYEAIVTVRGQGYRFD 221 >gi|311104579|ref|YP_003977432.1| transcriptional regulator TctD 2 [Achromobacter xylosoxidans A8] gi|310759268|gb|ADP14717.1| transcriptional regulatory protein TctD 2 [Achromobacter xylosoxidans A8] Length = 235 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 8/151 (5%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETG 129 S+ P++ ++ ++ + D+G DD + KP RE+ AR A+ RR + G Sbjct: 71 SKTPVLALTARIDIEDRVHALDTGADDYLAKPFDFRELEARCRALLRRPSAQAAGVLRFG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + S R + G+ LP+RE +LE L+A + V+KT+I ++ FD+ N Sbjct: 131 ELVIDSAARQVTLAGQRIELPKREYSLLEILLAGMNRAVSKTEIAHKLFA-FDDDAAPNA 189 Query: 190 VESHISKLRKKLRNKLGFDP--VDSKRFLGY 218 +E +I++LR+KL P ++++R GY Sbjct: 190 IEVYIARLRRKLEGS----PLRIETQRGTGY 216 >gi|260424729|ref|ZP_05733084.2| DNA-binding response regulator PhoP [Dialister invisus DSM 15470] gi|260402973|gb|EEW96520.1| DNA-binding response regulator PhoP [Dialister invisus DSM 15470] Length = 209 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 90/166 (54%), Gaps = 8/166 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+K+LE +R S +P+I +S S+ ++ ++G DD + KP +E++AR+ + Sbjct: 44 GDKILEN---VREISTIPIIYLSSDGSVDRKVEVLNAGADDYLTKPYATKELIARIRSTL 100 Query: 117 RRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR + V++ G + ++ D + V EV L ++E +L +L N+ + + + + Sbjct: 101 RRHEEPKIVADPSFNIGDLAIYPDRHEVRVGDEVVDLTKKEFDLLLFLAKNKNRVLKREE 160 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + ++G + A + N+V+ ++ LR K+ K+G + + R +GY Sbjct: 161 VLEKVWG-YGYAGKTNIVDVYVRYLRSKIDEKVGKKYIHTVRGIGY 205 >gi|257889529|ref|ZP_05669182.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|260559821|ref|ZP_05832000.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|257825889|gb|EEV52515.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|260074045|gb|EEW62368.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] Length = 224 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 5/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I + Q P++ ++ SL+ ++ F+ G DD + KP + E++ RV A+ +R Sbjct: 63 LAKIRKEKIQPPVLILTAKDSLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSLGL 122 Query: 123 NNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + D + EV + +V P+ +E +L Y + N+G + K QIF I+G Sbjct: 123 FDENVLKYKDISCDLKSNEVLYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 FD V+E ++S LRK LR+ G D + + R +GY Sbjct: 182 FDSDTTITVIEVYMSNLRKHLRST-GLDKEIKTLRNVGY 219 >gi|154505942|ref|ZP_02042680.1| hypothetical protein RUMGNA_03484 [Ruminococcus gnavus ATCC 29149] gi|153793960|gb|EDN76380.1| hypothetical protein RUMGNA_03484 [Ruminococcus gnavus ATCC 29149] Length = 217 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 79/144 (54%), Gaps = 3/144 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + L + ++ + ++P I ++ + L FD G DD V KP R +L R+ + +R K Sbjct: 59 INLYQELQKNGRIPAIFLTAKDDEKDMLKAFDIGADDYVVKPFSIRVLLKRIEVVLKR-K 117 Query: 121 VSNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N G + ++SD + V + E+F L +E ++LEYL+ N+ + + K I I+G Sbjct: 118 SNENTFMCGQVILYSDRKQVFVGETEIF-LTVKEYQLLEYLIMNQNQVLTKEMIMENIWG 176 Query: 180 LFDEAVEENVVESHISKLRKKLRN 203 + E ++ N + IS+L+KKL + Sbjct: 177 IDSEFIDSNTISVMISRLKKKLND 200 >gi|325570595|ref|ZP_08146321.1| response regulator [Enterococcus casseliflavus ATCC 12755] gi|325156441|gb|EGC68621.1| response regulator [Enterococcus casseliflavus ATCC 12755] Length = 230 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 5/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125 IR S+VP+I +S + + G DD + KP +LA++ A+ RR + S+ + Sbjct: 67 IRKISEVPIIFLSSMDQQMNQIMAMNMGADDYLTKPFDLAFVLAKIQALLRRSYQYSHQQ 126 Query: 126 AET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 A T G + + + QGE PL E RIL L+ +RGK VAK I ++ + Sbjct: 127 ALTFNIGQVTFYPTENVLKNQGEQLPLSPNEARILSLLLQHRGKIVAKETIIEMLWH-SE 185 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ N + ++++LRKKL D + + + GY I+ Sbjct: 186 EFIDNNTLAVNMTRLRKKLSQIELSDLIQTVKNKGYLIE 224 >gi|255505528|ref|ZP_05346649.3| DNA-binding response regulator ResD [Bryantella formatexigens DSM 14469] gi|255267413|gb|EET60618.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM 14469] Length = 251 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 111/221 (50%), Gaps = 12/221 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEK 59 ++++D A +++ + + D G+NS+ + E L R+ + I A ++ Sbjct: 31 LVVEDNADMRELFCTVLAD-----HGYNSIPAADGAEALDIMDRQYIDLIVADIMMPNMD 85 Query: 60 VLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +L + +R A+ +P++ ++ F +G DD + KP++ E++ RV A+ RR Sbjct: 86 GYQLTKALRDANYTLPVLMVTAKDQFIDLQQGFRTGADDYMIKPVNVNELVLRVEALLRR 145 Query: 119 LKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++S+ + T G + D + G+ LP++E +L L++ K + Q+ I Sbjct: 146 ARISSEKKITIGSTVLDYDALTVTIHGKETLLPQKEFYLLYKLLSYPNKIFTRQQLMDEI 205 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +G+F E +E V +HI++LR K + F+ V + R LGY Sbjct: 206 WGMFSET-DERTVNTHINRLRDKFSDCSDFEIV-TVRGLGY 244 >gi|148379025|ref|YP_001253566.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153933944|ref|YP_001383407.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937242|ref|YP_001386955.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|170757255|ref|YP_001780669.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|170760535|ref|YP_001786430.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|226948311|ref|YP_002803402.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|148288509|emb|CAL82588.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152929988|gb|ABS35488.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933156|gb|ABS38655.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|169122467|gb|ACA46303.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169407524|gb|ACA55935.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|226841225|gb|ACO83891.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 228 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 100/197 (50%), Gaps = 18/197 (9%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+GY G+ S+E F S++ + + D+S GE E+ RIIR Sbjct: 21 LEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLMLPDIS---------GE---EVCRIIR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126 S V + ++ +L ++ + G D+ + KP RE+ ARV A++RRL N+ + Sbjct: 69 QSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTYNSTSNL 128 Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + G + + D R +V G+ + E IL L++N+GK +++ Q+ + I+G+ D Sbjct: 129 IFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIFGI-DFN 187 Query: 185 VEENVVESHISKLRKKL 201 + ++ HI +RKK+ Sbjct: 188 GYDRTIDVHIKNIRKKI 204 >gi|296444660|ref|ZP_06886624.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296257928|gb|EFH04991.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 233 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 9/147 (6%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R A + P++ +S ++ + G DD + KP H E++AR+ AI RR Sbjct: 61 EVLRTLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRR-- 118 Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S A+ TG + V D + EV G L +E ++LE L +G + K + Sbjct: 119 -SKGHAQSVIITGDLVVNLDQKTVEVSGSRVHLTGKEYQMLELLSLRKGTTLTKEMFLNH 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203 +YG DE E +++ I KLRKKL N Sbjct: 178 LYGGMDEP-ELKIIDVFICKLRKKLAN 203 >gi|72163309|ref|YP_290966.1| response regulator receiver [Thermobifida fusca YX] gi|71917041|gb|AAZ56943.1| response regulator receiver [Thermobifida fusca YX] Length = 230 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 14/169 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRTLRQKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRTA 121 Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + E GP+R+ + V+GE LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 DDTVLPSVLEAGPVRMDVERHVVTVRGENVQLPLKEFELLEVLLRNAGRVLTRPQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221 +G D + ++ HI K+LR K+ DP + + R LGY + Sbjct: 182 WG-ADYVGDTKTLDVHI----KRLRAKIETDPSKPQHIITVRGLGYKFE 225 >gi|329122103|ref|ZP_08250711.1| DNA-binding response regulator [Dialister micraerophilus DSM 19965] gi|327466910|gb|EGF12426.1| DNA-binding response regulator [Dialister micraerophilus DSM 19965] Length = 226 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 86/158 (54%), Gaps = 5/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VS 122 +RA S +P++ IS ++ + F+SGVDD + KP +E++AR+ A+ RR K V Sbjct: 68 VRAVSSLPIVVISSDADVEKKVQLFESGVDDYLVKPYATKELVARIHALLRRHKEPQIVV 127 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + + ++ + + + V L ++E +L +L+ N+ + + + +I ++G ++ Sbjct: 128 DPSFNIQDLYIYPERHEVRIGENVIELTKKEFDLLLFLVKNKNRVLKRDEIMKKVWG-YE 186 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N+V+ +I +R K+ K G V + R +GY + Sbjct: 187 YSGKTNIVDVYIRYIRSKIDEKFGKKYVHTVRGIGYVV 224 >gi|228953050|ref|ZP_04115111.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229079910|ref|ZP_04212442.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2] gi|228703494|gb|EEL55948.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2] gi|228806668|gb|EEM53226.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 214 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 20/215 (9%) Query: 10 LVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L+ Y + DG+ + FN F+ L +++ E+ ++IR Sbjct: 16 LMTQHYTVIVASDGLEGMTQFNKQSFDLILLDVMMPNLNG------------FEVSKMIR 63 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRA 126 + S VP+I ++ + + FD G+DD + KP ++ RV A+ RR K NN Sbjct: 64 SQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNVNNHL 123 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 +R+ D V L +E IL+ L N K + + I ++G +D E Sbjct: 124 IFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YDYFGE 182 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++++HI LRK KL + + + +GY ID Sbjct: 183 TRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 213 >gi|152988285|ref|YP_001348119.1| two-component response regulator [Pseudomonas aeruginosa PA7] gi|150963443|gb|ABR85468.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 226 Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 7/219 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D L+ G +A G++++ S + L AR DV ++ L + + + Sbjct: 4 LLTEDDDLIASGIVAGLNAQGLTVDRVASAADTQALLQVARFDVLVLDLGLPDE-DGLRL 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ + +P++ ++ ++ + +G DD + KP RE+ AR+ + RR Sbjct: 63 LQRLRQQGFDLPVLVLTARDAVTDRVAGLQAGADDYLLKPFDLRELGARLHTLQRRSAGR 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N E G + R+ + G L RRE+ +L+ L+ NRG+ ++ Q+ ++YG Sbjct: 123 CVNVIEHGRLSYDPSTRETWLDGRPIELSRREQALLQALLNNRGRILSGEQLKDSVYGFG 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE VE N + HI LR+KL N + V + R LGY + Sbjct: 183 DE-VESNALNVHIHHLRRKLGNAI----VQTVRGLGYRL 216 >gi|260754024|ref|YP_003226917.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553387|gb|ACV76333.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 234 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL+ R A + P+I +S +++ + G DD + KP H E++AR+ A+ Sbjct: 59 GYEVLKTLRT--AQVKTPIIVLSGIAEMESKVRALGFGADDYLTKPFHQEELIARIQAVV 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + S + +TG + V D + E+ + L +E ILE L +G + K + Sbjct: 117 RRSQGHSQSIIKTGHLTVNLDSKTVEIDNKPVHLTGKEYAILELLSLRKGTTITKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +YG DE E +++ + KLRKKL Sbjct: 177 HLYGGMDEP-ELKIIDVFVCKLRKKL 201 >gi|51473272|ref|YP_067029.1| transcriptional activator protein CzcR [Rickettsia typhi str. Wilmington] gi|51459584|gb|AAU03547.1| transcriptional activator protein CzcR [Rickettsia typhi str. Wilmington] Length = 237 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A + P++ +S + F SG DD + KP E++AR+ AI RR S Sbjct: 63 LLRLRAAKIKTPILILSSLTDTDQKITSFSSGADDYLTKPFVREELIARIKAIVRR---S 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + + V D R EV G+ L +E ILE L+ RG + K + +Y Sbjct: 120 KGHAASVFRFDKVSVNLDTRSVEVDGKKIHLTNKEYSILELLIIRRGTILTKEMFLNHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 DE E +++ I KLRKKL + G D +D+ GY + Sbjct: 180 SSVDEP-EMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYML 221 >gi|323137579|ref|ZP_08072656.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] gi|322397205|gb|EFX99729.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] Length = 233 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 3/144 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R A + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRTLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVIATGDLIVNLDQKTVEVGGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRN 203 DE E +++ I KLRKKL N Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLAN 203 >gi|316934907|ref|YP_004109889.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315602621|gb|ADU45156.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 224 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 10/164 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VLE R R +P++ ++ + FD+G DD V KP H E+LAR+ A+ Sbjct: 59 GISVLEAWR--RNSRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALL 116 Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + + GP+ + + G L E R+L YLM + G+ V++T++ Sbjct: 117 RRSAGHAQSELSCGPVVLDTRTGRVSANGNPVKLTSHEYRLLAYLMHHSGRVVSRTELVE 176 Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y FD + N +E + ++RK KLG D + + R LGY Sbjct: 177 HLYDQDFDR--DSNTIEVFVGRIRK----KLGVDIIQTVRGLGY 214 >gi|85702768|ref|ZP_01033872.1| DNA-binding response regulator CtrA [Roseovarius sp. 217] gi|85671696|gb|EAQ26553.1| DNA-binding response regulator CtrA [Roseovarius sp. 217] Length = 238 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S + + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRLARVAT--PILILSGAGDTDSKIRGFGFGADDYLTKPFHRDELVARIHAII 116 Query: 117 RRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + TG + V D + + G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSVIRTGMVNVNLDAKTVDAGGKAVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +YG DE E +++ I KLRKKL Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201 >gi|317502228|ref|ZP_07960401.1| two-component system response regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|316896343|gb|EFV18441.1| two-component system response regulator [Lachnospiraceae bacterium 8_1_57FAA] Length = 221 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 5/205 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 +F+L DD+ L K IAL D+ + LE + Q + D+ ++ L G G Sbjct: 4 IFLLEDDKILSKGISIALKKDEHTVTAVYGYLEALQQYQKQ-KYDLFLLDINLPDGNG-- 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE + IR S+ P++ ++ + + L+ F G DD ++KP + +V A+ +R Sbjct: 61 -LEFCKKIRETSETPVLFLTANDTEEDMLEGFGVGCDDYISKPFSIEVLRKKVLAVLKRT 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R + + + + ++G+ L E ++L YLM NRG+ V K + ++ Sbjct: 120 GIGKFRMKYRDLELDKEKCVVLMKGQEIHLTSTEYKLLLYLMENRGRVVTKAMLLEQLWD 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 + V++N V +I +LR+KL ++ Sbjct: 180 IDGNFVDDNTVRVNIKRLRQKLHDE 204 >gi|253573996|ref|ZP_04851338.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846473|gb|EES74479.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 221 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 3/157 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121 L R IR+ P++ ++ ++ G DD + KP E+ AR+AA + R + Sbjct: 64 LCRQIRSKVDCPILFLTAKSMENDLVEGLSIGADDYIVKPFGAGELRARIAAHLRRESRE 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + G++ VQ PL + E I E+L NRG+ +K QI+ +++G F Sbjct: 124 RRSVLCIGEVHFNLSGKEMRVQDTFIPLTKSEYAICEFLALNRGQVFSKDQIYESVFG-F 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D E + + H+ +R KL N++ +P+++ +GY Sbjct: 183 DGESEASTIVEHVKNIRAKL-NQMNVNPIETVWGIGY 218 >gi|229097240|ref|ZP_04228202.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29] gi|229103326|ref|ZP_04234009.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28] gi|229116236|ref|ZP_04245626.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3] gi|228667068|gb|EEL22520.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3] gi|228680165|gb|EEL34359.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28] gi|228686051|gb|EEL39967.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29] Length = 214 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 20/215 (9%) Query: 10 LVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L+ Y + DG+ + FN+ F+ L +++ E+ ++IR Sbjct: 16 LMTQHYTVVVASDGLEGMTQFNNQSFDLILLDVMMPNLNG------------FEVSKMIR 63 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRA 126 + S VP+I ++ + + FD G+DD + KP ++ RV A+ RR K NN Sbjct: 64 SQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNVNNHL 123 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 +R+ D V L +E IL+ L N K + + I ++G +D E Sbjct: 124 IFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YDYFGE 182 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++++HI LRK KL + + + +GY ID Sbjct: 183 TRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 213 >gi|317126039|ref|YP_004100151.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590127|gb|ADU49424.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 227 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 14/175 (8%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G +++ R +R S VP+I ++ S + + G DD V KP RE+LARV Sbjct: 53 LMLPGLSGIDVCRALRQRSSVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARV 112 Query: 113 AAIYRRLKVSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RRL + E GP+R+ + V G LP +E +LE L+ N G+ + Sbjct: 113 KAVLRRLAEPEDLLPPTIEAGPVRMDVERHTVTVNGAPTSLPLKEFELLEMLLRNSGRVL 172 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 + Q+ ++G D + ++ H+ K+LR K+ DP + + R LGY Sbjct: 173 TRMQLIDRVWG-SDYVGDTKTLDVHV----KRLRAKVEPDPARPVHIVTVRGLGY 222 >gi|298292563|ref|YP_003694502.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296929074|gb|ADH89883.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 233 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 69/136 (50%), Gaps = 2/136 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127 A + P++ +S ++ + G DD + KP H E++AR+ AI RR K + + Sbjct: 69 AKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSKGHAQSVIT 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 TG + V D + EV G L +E ++LE L +G + K + +YG DE E Sbjct: 129 TGDLVVNLDTKTVEVAGNRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-EL 187 Query: 188 NVVESHISKLRKKLRN 203 +++ I KLRKKL N Sbjct: 188 KIIDVFICKLRKKLAN 203 >gi|292558419|gb|ADE31420.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus suis GZ1] Length = 242 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ + SL+ F+ G DD + KP + E+ R+ A+ +R K + N G + Sbjct: 92 TPVLITTAKESLEDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLTYGDV 151 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V V GE L +E +L Y + N+ + KTQIF I+G FD +VVE Sbjct: 152 TVDLSTNSTTVNGEEVELLGKEFDLLVYFLQNQNVILPKTQIFDRIWG-FDSDTTISVVE 210 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + + R +GY Sbjct: 211 VYVSKIRKKLKGTTFGENLQTLRSVGY 237 >gi|296132738|ref|YP_003639985.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296031316|gb|ADG82084.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 230 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 11/149 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR HS+VP+I ++ + + G DD + KP + RE++AR+ A+ RR Sbjct: 61 LEVCRQIRMHSRVPIIMLTAKDEDMDKILGLEMGADDYITKPFNPREVVARIKAVLRR-- 118 Query: 121 VSNNRAETGPIRVFS-DGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 VS+ ++G +V +G + + QG P +E +L L +N G+ + Q Sbjct: 119 VSDISTDSGKQQVLKYNGLEINIMDFTVKLQGREIPFTPKELELLWLLASNPGRVYTREQ 178 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + ++G +D + V++HI ++RKK+ Sbjct: 179 LLEKVWG-YDYFGDSRTVDTHIKRIRKKI 206 >gi|295093683|emb|CBK82774.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 222 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 12/214 (5%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 LVK+GY DG + + +E E + AI +I + + L + A Sbjct: 20 LVKEGYNVDACYDGQA--ALDYMEAENY--------DGAIMDIMIPNKDGITVLREMRNA 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128 QVP++ ++ Q + D+G D + KP E++AR+ + R V+ N Sbjct: 70 GIQVPVLFLTAKTETQDIVRGLDAGASDYMTKPFEFSELMARLRVMLRTQNPVNENVITC 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + V + R G+V L RE ILEYL NR V + QI I+ + D+ V N Sbjct: 130 GSLVVDMNNRQAIRDGKVIDLTVREYAILEYLARNRNVVVTREQIRVNIWNI-DDDVNSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 V++ +I LR+K+ + + + R +GY ++ Sbjct: 189 VIDVYIRYLRRKIDDNYEEKLIHTIRGVGYKLEC 222 >gi|220923532|ref|YP_002498834.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219948139|gb|ACL58531.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 233 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 4/148 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ A + P++ +S ++ + G DD + KP H E++AR+ AI Sbjct: 59 GYEVLRSLRV--AKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIV 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + TG + V D + EV G L +E ++LE L +G + K + Sbjct: 117 RRSKGHAQSVITTGDLIVNLDQKTVEVSGARVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203 +YG DE E +++ I KLRKKL N Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLAN 203 >gi|94968685|ref|YP_590733.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550735|gb|ABF40659.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 230 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 12/170 (7%) Query: 61 LELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L LP++ +R H + P++ ++ L+ + D G DD + KP E+ ARV Sbjct: 52 LNLPKLDGFGVLQQVRDHKRCPILVLTGRTRLEDRVRVLDGGADDCLLKPFSFAELSARV 111 Query: 113 AAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A+ RR + + + + + R G L +E +LEYLM N G+RV +T Sbjct: 112 RALLRRGVSAAQFKLRVADLELDRVQRTVARSGRRIELTSKEFALLEYLMRNAGRRVTRT 171 Query: 172 QIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++ L FD NVV+ +++ LR+K+ ++ + + R +GY I Sbjct: 172 MIIEHVWNLKFDTGT--NVVDVYVNYLRRKVDSEFPTKLIGTVRGVGYEI 219 >gi|302333994|gb|ADL24187.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JKD6159] Length = 224 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 96/186 (51%), Gaps = 6/186 (3%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L R D++ ++ + G +L ++ +P+I ++ +L F SG DD Sbjct: 40 LLEKQRVDIAVVDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156 V KP +E++ R+ A+ RR +++N +T G + + + +V + LP +E ++ Sbjct: 98 YVTKPFEVKELIFRIRAVLRRYNINSNSEKTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 157 Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 L +++A R K++ + QI I+G +D +E V+ HI +LR++L+ +++ R Sbjct: 158 L-FMLAARPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLKKLNATLTIETVRG 215 Query: 216 LGYSID 221 GY ++ Sbjct: 216 QGYKVE 221 >gi|254501704|ref|ZP_05113855.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] gi|222437775|gb|EEE44454.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] Length = 222 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H E+LARV A+ RR ++N G +R+ V G L Sbjct: 91 IDAGADDYVAKPFHMEEVLARVRALVRRAAGHASNELTCGNVRLDLRAGRVTVDGSPIKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YL+ ++GK +++T++ +Y FD + N VE + +LRK K+G + Sbjct: 151 TSHEYRLLSYLLHHQGKVISRTELTEHLYDQDFDR--DSNTVEVFVGRLRK----KIGAE 204 Query: 209 PVDSKRFLGYSI 220 +++ R LGY + Sbjct: 205 MIETIRGLGYRL 216 >gi|255527459|ref|ZP_05394330.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186052|ref|ZP_06854457.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255508839|gb|EET85208.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049320|gb|EFG88749.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 232 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 11/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125 IR ++ P+I +S S +T L+ + G DD + KP E++ARV + RR L+ S Sbjct: 70 IREITKAPIIVVSAKTSKKTKLELLEKGADDFICKPFDPDEVVARVKSNLRRYLEFSTGG 129 Query: 126 AETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I V+ D ++ +V + L RE ILE L+ N K +K+ IF +I+ Sbjct: 130 EKKNNILVYKDISLNIESKEVKVGQTLITLTAREFDILELLLKNPSKVYSKSNIFESIWE 189 Query: 180 LFDEAV-EENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +E + E N + H+S+LR KL N G D +++ +GY + Sbjct: 190 --EEFLGEYNTINVHVSRLRTKLCNAGDGKDYIETVWGMGYRL 230 >gi|170695630|ref|ZP_02886773.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170139429|gb|EDT07614.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 219 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 6/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L RI A + VP++ ++ ++ + ++G DD + KP E+ AR A+ RR + Sbjct: 63 LKRIRDAGNDVPVLVLTARGTVVDRVSGLEAGADDYLGKPFDLTELTARCRALLRRAQGR 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S G + V + ++ G PL RE IL L+ N+G +++++ ++YG + Sbjct: 123 SVELICYGDLTVNPAAQTAQLAGTRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG-W 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +E N +E HIS LR+KL KL + + R +GY ++ Sbjct: 182 QQEIESNAIEVHISNLRRKLGAKL----IRTVRNIGYVVE 217 >gi|124005018|ref|ZP_01689861.1| two-component system response regulator [Microscilla marina ATCC 23134] gi|123989696|gb|EAY29242.1| two-component system response regulator [Microscilla marina ATCC 23134] Length = 225 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 2/150 (1%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-G 129 SQ ++ IS SL L D G DD + KP H E+ AR+ +I RR N Sbjct: 71 SQAGVLIISAKNSLDDKLAGLDLGADDYITKPFHLAELNARIKSILRRRNFEGNHEVIFQ 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEEN 188 IRV +D + V G++ L ++E+ +L Y ++N+ + + K I ++G D A + Sbjct: 131 EIRVNTDKFETLVNGQLVVLTQKEQELLLYFISNKNRVLTKESIAEHLWGDHMDMADSFD 190 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +HI LR+K+ K G + + + +GY Sbjct: 191 FIYTHIKNLRRKIAQKGGKNYLQTVYGIGY 220 >gi|87199648|ref|YP_496905.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135329|gb|ABD26071.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 227 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 101/227 (44%), Gaps = 33/227 (14%) Query: 8 RALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66 R L ++G + L D LE SL F+ L D+ E R+ Sbjct: 18 RGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPDMDGFEV-----------CARL 66 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 S +P+I ++ + + G DD + KP E+LAR+ AI RR+ S Sbjct: 67 REQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMAPSQGG- 125 Query: 127 ETGPIRVFSDGR--------DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +V DGR DP G L +E +L LM + G +++T+I Sbjct: 126 -----KVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A++G+ D+ + N+VE ++S+LR+KL + LG V++ R GY + Sbjct: 181 LRAVWGMEDDPL-TNIVEVYLSRLRRKL-HALGPPVVENVRGFGYRL 225 >gi|15597675|ref|NP_251169.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107101924|ref|ZP_01365842.1| hypothetical protein PaerPA_01002970 [Pseudomonas aeruginosa PACS2] gi|116050423|ref|YP_790758.1| two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218891541|ref|YP_002440408.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254235479|ref|ZP_04928802.1| hypothetical protein PACG_01395 [Pseudomonas aeruginosa C3719] gi|254240911|ref|ZP_04934233.1| hypothetical protein PA2G_01589 [Pseudomonas aeruginosa 2192] gi|296389103|ref|ZP_06878578.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|9948530|gb|AAG05867.1|AE004675_8 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115585644|gb|ABJ11659.1| probable two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126167410|gb|EAZ52921.1| hypothetical protein PACG_01395 [Pseudomonas aeruginosa C3719] gi|126194289|gb|EAZ58352.1| hypothetical protein PA2G_01589 [Pseudomonas aeruginosa 2192] gi|218771767|emb|CAW27544.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] Length = 226 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D L+ G +A G++++ S + L AR DV ++ L + + + Sbjct: 3 VLLTEDDDLIASGIVAGLNAQGLTVDRVASAADTQALLQVARFDVLVLDLGLPDE-DGLR 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 L R+ + +P++ ++ ++ + +G DD + KP RE+ AR+ + RR Sbjct: 62 LLQRLRQQGVDLPVLVLTARDAVTDRVAGLQAGADDYLLKPFDLRELGARLHTLQRRSAG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N E G + R+ + G L RRE+ +L+ L+ NRG+ ++ Q+ ++YG Sbjct: 122 RCVNVIEHGRLSYDPSTRETWLDGRPVELSRREQALLQALLNNRGRILSGEQLKDSVYGF 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE VE N + HI LR+KL N + V + R LGY + Sbjct: 182 GDE-VESNALNVHIHHLRRKLGNAI----VQTVRGLGYRL 216 >gi|170742091|ref|YP_001770746.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168196365|gb|ACA18312.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 233 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 4/148 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ A + P++ +S ++ + G DD + KP H E++AR+ AI Sbjct: 59 GYEVLRSLRV--AKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIV 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + TG + V D + EV G L +E ++LE L +G + K + Sbjct: 117 RRSKGHAQSVITTGDLIVNLDQKTVEVSGARVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203 +YG DE E +++ I KLRKKL N Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLAN 203 >gi|152998792|ref|YP_001364473.1| two component transcriptional regulator [Shewanella baltica OS185] gi|151363410|gb|ABS06410.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] Length = 219 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 83/150 (55%), Gaps = 7/150 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131 +P++ ++ + +D +G DD + KP H E+LAR+ + RR ++N + I Sbjct: 73 MPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHFGRADNVLQHAGI 132 Query: 132 RVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + D + V GEV L + E R+L YLM N K V+K+++ IY D+ + NV+ Sbjct: 133 SLDVDKQAVTNVDGEVIELTKIEYRLLHYLMVNPSKIVSKSELSERIYE-EDQIKDSNVI 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++++LR+ +LG D ++++R GY + Sbjct: 192 EVYVNRLRQ----RLGKDYIETRRGQGYRL 217 >gi|325674080|ref|ZP_08153770.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325555345|gb|EGD25017.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 229 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 21/169 (12%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR ++N A Sbjct: 67 LRAKSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR--GADNEA 124 Query: 127 ET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 T GP+R+ + V G+ LP +E +LEYL+ N G+ + + Q+ + Sbjct: 125 ATDVDDGVLAAGPVRMDVERHLVHVNGDPVTLPLKEFDLLEYLLRNSGRVLTRGQLIDRV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 +G D + ++ H+ +LR K+ DP K R LGY ++ Sbjct: 185 WG-ADYVGDTKTLDVHVKRLRAKIEG----DPGKPKHLVTVRGLGYKLE 228 >gi|210616623|ref|ZP_03291153.1| hypothetical protein CLONEX_03374 [Clostridium nexile DSM 1787] gi|210149733|gb|EEA80742.1| hypothetical protein CLONEX_03374 [Clostridium nexile DSM 1787] Length = 220 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 10/164 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +R SQVP+I ++ + FD DD + KP R +L R+ AI+RR Sbjct: 61 FDVCREVREMSQVPIIILTALDEEDAEVKCFDLKADDYIVKPYSVRVVLKRIEAIFRRAN 120 Query: 121 VSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V N + E + ++ R V G+ L R E I++YL+ N+GK + ++ S Sbjct: 121 VGNQQEENCLVYENLKLDLASRTVYVNGKEVFLTRIEFDIVKYLIRNQGKVCTRYELLSE 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + E V HI LRKK G + + R +GY I Sbjct: 181 VWEC-EYCTGEREVNFHIMNLRKK-----GIQGIQTVRGIGYKI 218 >gi|170694237|ref|ZP_02885392.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170140977|gb|EDT09150.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 219 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 6/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L RI A + VP++ ++ ++ + ++G DD + KP E+ AR A+ RR + Sbjct: 63 LKRIRDAGNDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELTARCRALLRRAQGR 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S G + V + +V G PL RE IL L+ N+G +++++ ++YG + Sbjct: 123 SVEVIRYGDLTVNPAAQTAQVAGTRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG-W 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +E N +E HIS LR+KL +L + + R +GY ++ Sbjct: 182 QQEIESNAIEVHISNLRRKLGARL----IRTVRNIGYVVE 217 >gi|229070198|ref|ZP_04203454.1| Two-component response regulator vanRB [Bacillus cereus F65185] gi|228712922|gb|EEL64841.1| Two-component response regulator vanRB [Bacillus cereus F65185] Length = 221 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 20/215 (9%) Query: 10 LVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L+ Y + DG+ + FN F+ L +++ E+ ++IR Sbjct: 23 LMTQHYTVIVASDGLEGMTQFNKQSFDLILLDVMMPNLNG------------FEVSKMIR 70 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRA 126 + S VP+I ++ + + FD G+DD + KP ++ RV A+ RR K NN Sbjct: 71 SQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNVNNHL 130 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 +R+ D V L +E IL+ L N K + + I ++G +D E Sbjct: 131 IFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YDYFGE 189 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++++HI LRK KL + + + +GY ID Sbjct: 190 TRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 220 >gi|229194886|ref|ZP_04321669.1| Two-component response regulator [Bacillus cereus m1293] gi|228588590|gb|EEK46625.1| Two-component response regulator [Bacillus cereus m1293] Length = 229 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 5/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + RI + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR Sbjct: 68 IQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSL 127 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G Sbjct: 128 TTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVWG- 186 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 FD +VE ++ LRKKL G+ + + R +GY Sbjct: 187 FDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224 >gi|119897270|ref|YP_932483.1| transcriptional regulator [Azoarcus sp. BH72] gi|119669683|emb|CAL93596.1| probable transcriptional regulatory protein [Azoarcus sp. BH72] Length = 223 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 73/142 (51%), Gaps = 10/142 (7%) Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R +R+ Q P+I IS +L+ + D G DD V KP EI AR+ A+ RR Sbjct: 61 ELVRRLRSRRQTTPVIFISARQALEDRIHGLDLGADDYVVKPAEISEITARMRAVLRRGP 120 Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GPI + +DGR + G+ PL RE ILE L+A G+ VAK ++ + G Sbjct: 121 YRIGDEMRFGPIMLDADGRLASLNGQALPLTGREWEILEALVAADGRTVAKDRLQADSGG 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 N E +IS+LR +L Sbjct: 181 --------NAAEVYISRLRPRL 194 >gi|58580811|ref|YP_199827.1| response regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425405|gb|AAW74442.1| response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Xanthomonas oryzae pv. oryzae KACC10331] Length = 249 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 6/132 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149 D G DD + KP E+LAR A+ RR A + G +R+ G G L Sbjct: 108 LDVGADDYLGKPFDTNELLARTRALLRRSAGRTQPALQAGALRLDPAGMSVRWHGRDLDL 167 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 RRE +L LM RG+ + + +I +YG +DE V N V+ H+ +LR+KL + Sbjct: 168 TRREFALLWLLMEQRGRPIGRERIQQHLYG-WDEDVASNAVDVHVHQLRRKLSAAV---- 222 Query: 210 VDSKRFLGYSID 221 + + R +GY++D Sbjct: 223 IRTIRGIGYALD 234 >gi|76817820|ref|YP_337428.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 1710b] gi|76582293|gb|ABA51767.1| DNA-binding response regulator TctD [Burkholderia pseudomallei 1710b] Length = 287 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 78/143 (54%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L++ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 124 LDVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRS 183 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L + R E GP+ S R + + L RER +LE L+ G+ + K + I+ Sbjct: 184 LGHEHGRVECGPLAFDSVDRSFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIF 243 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 GL DE+V + +E ++ +LRKKL Sbjct: 244 GL-DESVNADAIEIYVHRLRKKL 265 >gi|239947000|ref|ZP_04698753.1| transcriptional activator protein CzcR [Rickettsia endosymbiont of Ixodes scapularis] gi|239921276|gb|EER21300.1| transcriptional activator protein CzcR [Rickettsia endosymbiont of Ixodes scapularis] Length = 237 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A + P++ +S + F SG DD + KP E++AR+ AI RR S Sbjct: 63 LLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRR---S 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + + V D R EV G+ L +E ILE L+ RG + K + +Y Sbjct: 120 KGHAASVFRFDKVSVNLDARSVEVNGKKVHLTNKEYAILELLILRRGTILTKEMFLNYLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 DE E +++ I KLRKKL + G D +D+ GY + Sbjct: 180 SSVDEP-EMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYML 221 >gi|228989703|ref|ZP_04149685.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228770037|gb|EEM18619.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 223 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 5/161 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + RI + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR Sbjct: 62 IQRIRNDKIETPVLFLTAKDSLEDRVKGLDFGGDDYLIKPFQAPELKARIRALLRRSGNL 121 Query: 123 NNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + I +F +D +V GE L ++ +LEYL+ N GK + + QIF ++G Sbjct: 122 TTKQTINYRGIELFGKDKDIQVGGEAIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 FD +VE ++ LRKKL G+ + + R +GY + Sbjct: 181 FDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGYML 220 >gi|218660659|ref|ZP_03516589.1| probable two-component response regulator protein [Rhizobium etli IE4771] Length = 60 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 29/56 (51%), Positives = 44/56 (78%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK 56 M V++D+R LVKDGY +LFG +G+ GF+ EF +W+Q++A D++A+EAFLIG+ Sbjct: 1 MIVVVDERELVKDGYTSLFGREGIPSTGFDPSEFGDWVQTAADSDIAAVEAFLIGQ 56 >gi|212633628|ref|YP_002310153.1| transcriptional regulatory protein [Shewanella piezotolerans WP3] gi|212555112|gb|ACJ27566.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 224 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 12/222 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D L+ + + G + + + ++L D ++ L G G ++ Sbjct: 3 LLLVEDNTLLVEELLKQLKQAGYVTDTTDKISEADYLIKETNYDCVILDIGLPDGNGLEL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE R H+ P+I ++ ++ F+SG DD + KP H +E+L R+ A+ +R Sbjct: 63 LERWREQGIHT--PVIMLTARSQWHEKVEGFNSGADDYLGKPFHTQELLVRIQALIQRAH 120 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + + + + V F L E R+L+ + + K ++K Q+ Sbjct: 121 GKANTPNKQLTYAGVALDESQQSVTVADNTFELTAMEFRLLKIFLMSPKKLLSKAQLTDK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y FD+ E NVVE +++ LRK KLG ++++R GY Sbjct: 181 LYQ-FDDEKESNVVEVYVTHLRK----KLGKTAIETRRGQGY 217 >gi|163814531|ref|ZP_02205920.1| hypothetical protein COPEUT_00682 [Coprococcus eutactus ATCC 27759] gi|158450166|gb|EDP27161.1| hypothetical protein COPEUT_00682 [Coprococcus eutactus ATCC 27759] Length = 239 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 79/145 (54%), Gaps = 13/145 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125 +R SQVP+I S S ++ D G DD + KP +E+++R+ +I RR V +N+ Sbjct: 74 LRHTSQVPIIFASVRTSEDDKVNGLDMGGDDYIAKPYSLKELMSRIRSILRRTYGVDDNK 133 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPR---------RERRILEYLMANRGKRVAKTQIFSA 176 +E + + +DG + E+ + R +E +L Y+ NRG+ + K QI SA Sbjct: 134 SEM--LTLNTDGNEIEINRYARTVSRNKSNVDMKPKEFDLLVYMAENRGRVLTKEQIMSA 191 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++GL+ + VE + V H+ LR+KL Sbjct: 192 VWGLYSD-VEPSTVAVHVRWLREKL 215 >gi|15599970|ref|NP_253464.1| PmrA: two-component regulator system response regulator PmrA [Pseudomonas aeruginosa PAO1] gi|116052923|ref|YP_793240.1| two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|296391604|ref|ZP_06881079.1| two-component response regulator [Pseudomonas aeruginosa PAb1] gi|9951041|gb|AAG08162.1|AE004891_4 PmrA: two-component regulator system response regulator PmrA [Pseudomonas aeruginosa PAO1] gi|115588144|gb|ABJ14159.1| two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 221 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 12/135 (8%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146 DSG DD + KP E+ ARV A+ RR + RA G +R+ + G+ Sbjct: 91 LDSGADDYLTKPFDLDELQARVRALTRR---TTGRALPQLVHGELRLDPATHQVTLSGQA 147 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L RE +L L+ N GK +++ Q+ ++YG + VE N +E H+ LR+KL N+L Sbjct: 148 VELAPREYALLRLLLENSGKVLSRNQLEQSLYG-WSGDVESNAIEVHVHHLRRKLGNQL- 205 Query: 207 FDPVDSKRFLGYSID 221 + + R +GY ID Sbjct: 206 ---IRTVRGIGYGID 217 >gi|260221887|emb|CBA30899.1| Transcriptional regulatory protein tctD [Curvibacter putative symbiont of Hydra magnipapillata] Length = 224 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ + +RA S +P++ ++ S+ + D G DD + KP +E+ ARV A+ RR Sbjct: 61 LEVLKKLRARGSSLPVLILTAADSVDERVKGLDYGADDYMAKPFSLQELEARVRALIRRG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + +++ + GP+ GR + G++ L RE +LE L+ G+ V+K Q+ + Sbjct: 121 MGATSSSIKHGPLTYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E +I +LRKK+ G + + R LGY ++ Sbjct: 181 E-WGEEVSNNAIEVYIHRLRKKIEK--GPIRIATVRGLGYCLE 220 >gi|298695623|gb|ADI98845.1| two-component response regulator [Staphylococcus aureus subsp. aureus ED133] gi|323443678|gb|EGB01291.1| two-component response regulator [Staphylococcus aureus O46] Length = 224 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 95/186 (51%), Gaps = 6/186 (3%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L R D++ ++ + G +L ++ +P+I ++ +L F SG DD Sbjct: 40 LLEKQRVDIAVVDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156 V KP +E++ R+ A+ RR +++N T G + + + +V + LP +E ++ Sbjct: 98 YVTKPFEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 157 Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 L +++A R K++ + QI I+G +D +E V+ HI +LR++L+ +++ R Sbjct: 158 L-FMLATRPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLKKLNATLTIETVRG 215 Query: 216 LGYSID 221 GY ++ Sbjct: 216 QGYKVE 221 >gi|225573433|ref|ZP_03782188.1| hypothetical protein RUMHYD_01625 [Blautia hydrogenotrophica DSM 10507] gi|225039184|gb|EEG49430.1| hypothetical protein RUMHYD_01625 [Blautia hydrogenotrophica DSM 10507] Length = 228 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 3/163 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE E R IR + P++ ++ L G DD + KP E+ AR+AA Sbjct: 56 GEDGFETCRRIRGLADCPIVFLTAKTEEADILTGLGIGGDDYLTKPFRLGELRARIAAHL 115 Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR ++ NR + R QG + L + E I EYL + G+ +K QI+ Sbjct: 116 RREQRIPQNRVRRAGLDFDLGERAVYRQGNLVRLTKGEYGICEYLALHAGQTFSKEQIYE 175 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 A++G ++ +E+ V H+ +R KL+ K G P+++ +GY Sbjct: 176 AVFG-WEGTSDESAVTEHVKNIRAKLK-KEGVSPIETVWGIGY 216 >gi|49081882|gb|AAT50341.1| PA2479 [synthetic construct] Length = 227 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 108/220 (49%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D L+ G +A G++++ S + L AR DV ++ L + + + Sbjct: 3 VLLTEDDDLIASGIVAGLNAQGLTVDRVASAADTQALLQVARFDVLVLDLGLPDE-DGLR 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 L R+ + +P++ ++ ++ + +G DD + KP RE+ AR+ + RR Sbjct: 62 LLQRLRQQGVDLPVLVLTARDAVTDRVAGLQAGADDYLLKPFDLRELGARLHTLQRRSAG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N E G + R+ + G L RRE+ +L+ L+ NRG+ ++ Q+ ++YG Sbjct: 122 RCVNVIEHGRLSYDPSTRETWLDGRPVELSRREQALLQALLNNRGRILSGEQLKDSVYGF 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE VE N + HI LR+KL N + V + R LGY + Sbjct: 182 GDE-VESNALNVHIHHLRRKLGNAI----VQTVRGLGYRL 216 >gi|330889414|gb|EGH22075.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. mori str. 301020] Length = 225 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 107/219 (48%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + + + D++ I+ L G G L Sbjct: 3 LLVVEDEALLRHHLRTRLTEAGHVVEAVANAGEALYQVTQFNHDLAVIDLGLPGIGG--L 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R + P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR Sbjct: 61 DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL + + F P+++ R +GY Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGY 218 >gi|283457730|ref|YP_003362317.1| response regulator [Rothia mucilaginosa DY-18] gi|283133732|dbj|BAI64497.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 233 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 105/212 (49%), Gaps = 15/212 (7%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L ++G+ A+F ++G FE +++S+ D+ ++ L G +E+ + IR Sbjct: 26 LAQEGFNAVFCENGAR-------AFETFMRSTP--DLVLLDLML--PGMNGIEVCQQIRR 74 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 S VP+I ++ + + ++G DD + KP H E+LAR+ R + G Sbjct: 75 SSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRLRPRESRQLVVSIG 134 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I + DGR + P+ E +L L+ + G+ +++ ++ ++G D V +++ Sbjct: 135 DIVMDMDGRTVKYHSTEVPMTPLEFDLLAALVRHPGQALSRQELLDMVWGYTD--VSDSL 192 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 V H+ +LR K ++LG D + + R +GY I Sbjct: 193 VNVHVQRLRAKF-DELGADRFIQTVRGVGYKI 223 >gi|229015889|ref|ZP_04172855.1| Two-component response regulator [Bacillus cereus AH1273] gi|229022109|ref|ZP_04178662.1| Two-component response regulator [Bacillus cereus AH1272] gi|228739199|gb|EEL89642.1| Two-component response regulator [Bacillus cereus AH1272] gi|228745402|gb|EEL95438.1| Two-component response regulator [Bacillus cereus AH1273] Length = 229 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 77 ETPVLFLTAKDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 136 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 137 GIELFGKDKDAQVDGQAIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 195 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 196 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224 >gi|71907507|ref|YP_285094.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] gi|71847128|gb|AAZ46624.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] Length = 229 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D AL+ DG G ++ N + L ++ D+ ++ L G G +V Sbjct: 3 ILLVEDDALLADGLARALRHSGYIVDTANDGLSADSLLANEAYDLVILDIGLPGLDGCEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 L+ R R Q P++ +S +++ + D G DD V KP+ E+ ARV A I RRL Sbjct: 63 LQRLRTRR--QQTPVLVLSARLAVEERVRLLDLGADDYVVKPVTQAELEARVRALIRRRL 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ G +R+ + G+ + L RE LE+L + V+K Q+ A+Y Sbjct: 121 GEASPEVVLGSLRLDTVGKRAWLNDTALELNAREWAALEFLAGRVNRIVSKEQLIQALYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + N +E +S+LR KL + G + + R LGY ++ Sbjct: 181 WQDE-ITPNAIEKLVSRLRVKL-EEAGI-TIRTVRGLGYYLE 219 >gi|170755155|ref|YP_001781532.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169120367|gb|ACA44203.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 221 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 103/217 (47%), Gaps = 21/217 (9%) Query: 9 ALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 L + GY+ DG +++E F F+ + + I+ F++ + II Sbjct: 21 VLKESGYLVEVATDGLIAVEMFRRWNFDLIILDVM---LPKIDGFVVCE---------II 68 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNN 124 R S VP+I ++ + + F+ VDD + KP ++ RV A+ RR L+ +N+ Sbjct: 69 RKESSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANGLEENNS 128 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 I ++ V + L +E +ILE L++N G+ ++ + + I+G +D Sbjct: 129 TLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNAGRVFSRESLLNQIWG-YDYF 187 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V+++HI K LR KL D + + R +GY I+ Sbjct: 188 GDTRVIDTHI----KNLRQKLNIDYIKTIRGVGYKIE 220 >gi|150378031|ref|YP_001314626.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032578|gb|ABR64693.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 222 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 9/168 (5%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G +L+ R R ++P+I ++ + + + ++G DD + KP+ E+ AR+ A Sbjct: 57 GSGLDILKALRARR--DEMPVIIMTAHDQVSDRIAGLNAGADDYLVKPVDLGELQARIHA 114 Query: 115 IYRRLKVSNNRAET-GPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + RR T G + V+ R Q GE L RE +L+ L+A + V+K+Q Sbjct: 115 VARRYGTHKLPDLTIGGVAVYPSERRISAQDGEEVLLSSREWAVLDRLIARKRAIVSKSQ 174 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I A+Y F VE N VE ++S+LR+ KLG D +++ R +GY I Sbjct: 175 IEEALYA-FGAEVESNTVEVYVSRLRR----KLGKDAIETVRGVGYRI 217 >gi|257094853|ref|YP_003168494.1| winged helix family two component transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047377|gb|ACV36565.1| two component transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 219 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 6/153 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127 A P + ++ L + DSG DD + KP E+ AR+ A+ RR + +R Sbjct: 68 ARDSTPALMLTARDLLSDRVQGLDSGADDYLVKPFAPEELSARLRAVCRRSAGGAASRLS 127 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + V R + G+ L RE ILE L+ G+ V K + + G F+ + Sbjct: 128 FGRVEVDLTARSAWLAGQRIELTGREWSILEALVLRAGRIVPKADLERLVLG-FEAELAS 186 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N +E H+S LR+ KLGFD V++ R LGY I Sbjct: 187 NAIEVHVSGLRR----KLGFDLVETVRGLGYRI 215 >gi|94311320|ref|YP_584530.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|254241470|ref|ZP_04934792.1| hypothetical protein PA2G_02165 [Pseudomonas aeruginosa 2192] gi|24461541|gb|AAN62112.1|AF440523_19 putative response-regulator ArmR [Pseudomonas aeruginosa] gi|93355172|gb|ABF09261.1| ArmR, DNA-binding response regulator (QseB) [Cupriavidus metallidurans CH34] gi|126194848|gb|EAZ58911.1| hypothetical protein PA2G_02165 [Pseudomonas aeruginosa 2192] Length = 222 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 13/167 (7%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +EL +RA Q+P++ ++ +++ L G DD + KP RE+ AR+ A+ RR Sbjct: 60 MELLASMRAVEPQLPVLILTARDAIEHRLKGLHEGADDYMIKPFDLRELAARLHALVRR- 118 Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + RA GP+R+ + QGE L RRE +L +L G+ V + Sbjct: 119 --TQGRAAQVISAGPLRLEPESGLAWFQGEPVSLSRREVDLLAHLANADGRWVPPDMLNE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +YGL +E + N + HI +R+ KLG + +++ R LGY + W Sbjct: 177 RLYGLGEE-IGSNALNVHIHNIRR----KLGAEAIETVRGLGYRLGW 218 >gi|309792219|ref|ZP_07686691.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308225760|gb|EFO79516.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 226 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 29/177 (16%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 ++ R IR +S VP+I +S LQ + G DD + KP E+LARV A+ RR Sbjct: 61 DICRQIRRNSDVPIIFLSGRSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRRRNS 120 Query: 119 -LKVSNNRAETG-----PIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 L +++R G P+ +FSDGR E+ PL E R+L YLM N G+ + Sbjct: 121 DLLSTSSRLSHGDLTLDPVEHKAIFSDGRTIELT----PL---EFRLLYYLMKNAGRILN 173 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221 +QI S ++G +D E N+V +I ++LR K+ DP V + R LGY + Sbjct: 174 VSQILSKVWG-YDYEGESNLVAVYI----RRLRTKIERDPEHPTYVITVRNLGYKFE 225 >gi|160934265|ref|ZP_02081652.1| hypothetical protein CLOLEP_03136 [Clostridium leptum DSM 753] gi|156866938|gb|EDO60310.1| hypothetical protein CLOLEP_03136 [Clostridium leptum DSM 753] Length = 223 Score = 68.6 bits (166), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 10/160 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I IS + + G DD ++KP ++A++ A+ RR + + Sbjct: 67 IRKASKVPIIFISSASDNMNIVMAMNMGADDFISKPFDQSVLIAKIQALLRR---AYDFG 123 Query: 127 ETGPI-----RVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ET PI + + G + V Q +V L + E RIL LM N+GK V++ ++ ++ Sbjct: 124 ETLPILEHHGAMLNTGDNTLVYQDQVISLTKNEYRILFTLMKNKGKVVSREKLMEQLWET 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V++N + +I++LRKKL + V +K +GY I Sbjct: 184 -DSFVDDNTLTVNITRLRKKLESAGLTQFVTTKFGIGYLI 222 >gi|309389720|gb|ADO77600.1| two component transcriptional regulator, winged helix family [Halanaerobium praevalens DSM 2228] Length = 229 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 83/163 (50%), Gaps = 4/163 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ IR S +P+I ++ L+ + D G DD + KP E+LAR+ A RR + Sbjct: 62 MEVCSQIREFSDIPIIMLTAKSELEDKVKGLDIGADDYLTKPFEIEELLARIRAHLRRDE 121 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + N +T + V D + GE L ++E +L YL+ N G V++ ++ + + Sbjct: 122 GNLENENILKTADVEVKLDAHIVKRAGEEIELTKKEYDLLVYLIRNEGIVVSRDKLLNNV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D E N+V+ +I LR K+ + + + R +GY + Sbjct: 182 WG-YDYTGETNIVDVYIRYLRSKIDDPFSQKIIHTVRGVGYVL 223 >gi|293400684|ref|ZP_06644829.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305710|gb|EFE46954.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 226 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 4/132 (3%) Query: 91 FDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 FD GVDD V KP RE+LARV A + R+ K E G +R+ R+ ++ E+ L Sbjct: 92 FDQGVDDYVTKPFSPRELLARVNAHMKRQSKRMEKDLEIGELRINLKRREALLKDELLTL 151 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 ++E +LEY ++N+ +++ I + I+G FD + +V+ H+ KLR KL+ Sbjct: 152 TKKEFDLLEYFVSNKNIVLSRDAILNDIWG-FDYDGDTRIVDVHVFKLRTKLQG--SNVH 208 Query: 210 VDSKRFLGYSID 221 + S R +GY ++ Sbjct: 209 IKSSRGVGYLLE 220 >gi|27376954|ref|NP_768483.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|12620551|gb|AAG60827.1|AF322012_132 ID284 [Bradyrhizobium japonicum] gi|27350096|dbj|BAC47108.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 229 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 12/171 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ + L ++ R +P + +S L + F++G DD + KP+ E++AR+ AI Sbjct: 57 GDSLDWLKQLRREGRSMPAMMMSSLNDLSRRIATFNAGADDFLPKPVSIDELIARMRAIL 116 Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR + T P+ F + R V G + + RRE ILE+L+ G+ V + Sbjct: 117 RR-----STQMTAPVVTFGNLHFDPIARQVSVGGRILRIARREVCILEHLLNRAGRTVPR 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++Y FD+ V N +E I +LR L + + R +GY+++ Sbjct: 172 ASLEDSLYA-FDDEVSTNALEVGIYRLRAHLNQAGATLRIKTARGVGYTLE 221 >gi|291287141|ref|YP_003503957.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290884301|gb|ADD68001.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 223 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 92/179 (51%), Gaps = 5/179 (2%) Query: 45 DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D+ ++ L G KG + L++ R + +S VP+I IS + Q ++ + G DD + KP Sbjct: 47 DIILLDLMLPGLKGMQFLQIVRNNKKYSGVPIIIISAKNTEQDIINGLEMGADDYLTKPF 106 Query: 104 HHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 + ++A++ AI RR ++ I + ++ V GE L +E +L+ L+ Sbjct: 107 SIKILIAKINAILRRNPAIKSKVISINGINIDTNNYVVTVDGEEISLTNKEYELLQLLLK 166 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + QI +A++G ++ V V++H+S LRKKL + F + S +GY D Sbjct: 167 HPKRVFTRNQILNAVWG-YESDVYTRTVDTHVSSLRKKLGTRGSF--IKSVPKIGYRAD 222 >gi|184201520|ref|YP_001855727.1| two-component response regulator RegX3 [Kocuria rhizophila DC2201] gi|183581750|dbj|BAG30221.1| two-component response regulator RegX3 [Kocuria rhizophila DC2201] Length = 226 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 110/232 (47%), Gaps = 22/232 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGE 58 ++++D + D L G EGF+ + +++ A D + + L+ G+ Sbjct: 4 ILMVEDEESLSDPLAYLLGR-----EGFDVTVVADGIRAVAEFDRAGADLVLLDLMLPGQ 58 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ + IR S VP+I ++ + + + G DD V KP RE++AR+ A+ RR Sbjct: 59 SGTEVCKQIRQRSNVPIIMLTAKDAEIDKVLGLELGADDYVTKPYSSRELVARIRAVLRR 118 Query: 119 L----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + GP+R+ + V GE +P +E +LE L+ N G+ + + Q+ Sbjct: 119 RAEPEELITSTVAAGPVRMDVERHVVHVDGEAVAMPLKEFELLEMLLRNAGRVLTRGQLI 178 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221 ++G D + ++ H+ K+LR+K+ DP + + R LGY + Sbjct: 179 DRVWG-SDYVGDTKTLDVHV----KRLRSKVEPDPSAPQHIVTVRGLGYKFE 225 >gi|300785477|ref|YP_003765768.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794991|gb|ADJ45366.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 226 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 13/193 (6%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL G+ DG LEG E +++ R D+ ++ L G+ EL R+IR Sbjct: 25 ALADAGFSVRSRPDGAELEG-------ELVRT--RPDLVVLDVLLPGRDG--FELLRVIR 73 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 S ++ ++ ++ L G DD V KP E++ARV A+ RR + E Sbjct: 74 RTSAAGVVMLTARDGVEDRLRGLGEGADDYVVKPFVLAELVARVTAVLRRTGRTRPAVEV 133 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + +G L E ++L Y +R + V+KTQ+ +A++G D A N Sbjct: 134 GDLVIDVEGGRARYGDADVELTSTEWKVLLYFAQHRDRVVSKTQVLTAVWGYGDSA--PN 191 Query: 189 VVESHISKLRKKL 201 +VE ++S LR+KL Sbjct: 192 LVEVNVSTLRRKL 204 >gi|223043244|ref|ZP_03613291.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] gi|222443455|gb|EEE49553.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] Length = 219 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 2/160 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR P+I I+ + D G DD + KP E+LAR+ AI RR + Sbjct: 61 LEICRQIRQEQSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-Q 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + I + D V G L + E +L L NR + + QI ++G Sbjct: 120 PQKNVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F+ VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 179 FNSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218 >gi|56552283|ref|YP_163122.1| winged helix family two component transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] gi|241761659|ref|ZP_04759746.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56543857|gb|AAV90011.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ZM4] gi|241373967|gb|EER63500.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 234 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL+ R A + P+I +S +++ + G DD + KP H E++AR+ A+ Sbjct: 59 GYEVLKTLRT--AQVKTPIIVLSGIAEMESKVRALGFGADDYLTKPFHQEELIARIQAVV 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + S + +TG + V D + E+ + L +E ILE L +G + K + Sbjct: 117 RRSQGHSQSIIKTGRLTVNLDSKTVEIDNKPVHLTGKEYAILELLSLRKGTTITKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +YG DE E +++ + KLRKKL Sbjct: 177 HLYGGMDEP-ELKIIDVFVCKLRKKL 201 >gi|238789085|ref|ZP_04632874.1| Two-component response regulator of virulence determinant [Yersinia frederiksenii ATCC 33641] gi|238722849|gb|EEQ14500.1| Two-component response regulator of virulence determinant [Yersinia frederiksenii ATCC 33641] Length = 223 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 109/223 (48%), Gaps = 5/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ + G ++ + ++ D++ I+ L GE L Sbjct: 4 LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 L R R+H + +P++ ++ S Q + ++G DD V KP H E++AR+ A+ RR + Sbjct: 62 LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMRRNIG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ + P ++ R+ V + L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVIDFPPFQIDLSRRELSVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E E + ++ + +LRKKL+ + + + + R GY D N Sbjct: 181 DAELRESHTIDVLMGRLRKKLQAEHEGEVITTIRGQGYRFDAN 223 >gi|91978862|ref|YP_571521.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91685318|gb|ABE41620.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB5] Length = 221 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 102/214 (47%), Gaps = 16/214 (7%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L + GYIA DG E W + + + I + + + + L R Sbjct: 18 RGLTEAGYIAECVADGE----------EAWFRGDTEDYAAIILDLGLPRLDGLTILKRWR 67 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 + P++ ++ S +D D+G DD + KP E+LAR+ +I RR + Sbjct: 68 EGGRRTPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSAGHASSVV 127 Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 T G + + V+G+ PL E R+ YL+ +RG+ V++ ++ +IYG D+A + Sbjct: 128 TIGDVTLDERQMQVTVRGQPAPLSPLEYRLASYLVLHRGRVVSQFELSESIYGQ-DDAHD 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N +E + ++RK KLG + ++++R GY + Sbjct: 187 SNAIEVLVGRVRK----KLGPELIETRRGFGYIV 216 >gi|312887240|ref|ZP_07746844.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311300552|gb|EFQ77617.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 225 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 4/168 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G +L+ + H+ ++ IS SL L D G DD + KP H E+ ARV A Sbjct: 57 GSGMNILKYLK--ENHNPDGVLIISAKNSLDDKLAGLDLGADDYLVKPFHLSELKARVTA 114 Query: 115 IYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 I RR S + T I + ++ +V ++ R+E +L Y AN+GK V+K I Sbjct: 115 IIRRKTFSGSNVLTFNEISIDLLAKEVKVNNQLVKFTRKEYALLLYFFANKGKVVSKNAI 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D A + + SH+ +RKKL D + + +GY + Sbjct: 175 AEHLWGDTADMADNFDFIYSHLKNVRKKLEEAGAKDYIKASYGMGYKL 222 >gi|255527744|ref|ZP_05394598.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187583|ref|ZP_06855977.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255508560|gb|EET84946.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047540|gb|EFG86980.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 231 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 11/169 (6%) Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R IR A ++P+I ++ + G DD + KP E+LAR+ A+ RR Sbjct: 63 EVCRRIRNDEATKKIPIIMLTVKKEENDKVRGLKLGADDYITKPFGINELLARIDAVLRR 122 Query: 119 L------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S+N + G I + +D + + +G V L RE ++L+ L N+G V++ Sbjct: 123 SDMISASNTSDNIMQIGDIEIDTDKYEVKKKGTVIELTLREFKLLQTLAKNKGNLVSREV 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + S ++G + + ++ HI KLRKKL + F +++ R LGY I Sbjct: 183 LLSEVWGCGNLG-DSRTLDVHIRKLRKKLEDNDKFPKYIETVRGLGYMI 230 >gi|255505684|ref|ZP_05347547.3| DNA-binding response regulator DltR [Bryantella formatexigens DSM 14469] gi|255266531|gb|EET59736.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM 14469] Length = 248 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 22/219 (10%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRII 67 +L K+GY DG+S LE L S R DV ++ L G G +VL+ R Sbjct: 38 SLKKEGYQTDCASDGIS-----GLE----LALSDRYDVILLDLMLPGLGGYQVLKQLR-- 86 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R ++ +I +S L+ + D G DD + KP +E+ AR+ A+ RR R E Sbjct: 87 REKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAVTRR-HGEVVRDE 145 Query: 128 TG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 IR F+ L +E +++EYLM N + +++++I I+G + Sbjct: 146 LVFQDLYLNIRTFT--LSSSATSHTLTLGSKEFQLMEYLMRNPKQVISRSRITEKIWG-Y 202 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D VE N V+ +IS LRKKL++ + + R +GY++ Sbjct: 203 DSEVEYNNVDVYISFLRKKLKHTGAHVEIRAVRGIGYTL 241 >gi|325282380|ref|YP_004254921.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324314189|gb|ADY25304.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 229 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 87/169 (51%), Gaps = 6/169 (3%) Query: 57 GEKVLELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 GE L L R +R+HS++ P++ ++ + ++ ++G DD + KP E++ARV Sbjct: 55 GESGLGLLRRLRSHSELRRLPVLMLTARAAEAERVEGLETGADDYLTKPFGAAELVARVR 114 Query: 114 AIYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ RR + + GP+ + D + G+ L RRE +L +L N G+ ++T+ Sbjct: 115 ALLRRTQPEQPQQLSNGPLHIDLAAADARLNGQRLSLTRREFDLLTFLTQNAGRVYSRTE 174 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + ++G D E V+ H+++LR L + G +++ R GY + Sbjct: 175 LLDRVWG-ADFLGGERTVDQHVTQLRSHLGDAPGAPTFLETVRGRGYRM 222 >gi|225628688|ref|ZP_03786722.1| two component response regulator [Brucella ceti str. Cudo] gi|256158058|ref|ZP_05455976.1| DNA-binding response regulator [Brucella ceti M490/95/1] gi|256252987|ref|ZP_05458523.1| DNA-binding response regulator [Brucella ceti B1/94] gi|260167009|ref|ZP_05753820.1| two component response regulator [Brucella sp. F5/99] gi|261220080|ref|ZP_05934361.1| two component transcriptional regulator [Brucella ceti B1/94] gi|261756397|ref|ZP_06000106.1| response regulator receiver [Brucella sp. F5/99] gi|265996572|ref|ZP_06109129.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|225616534|gb|EEH13582.1| two component response regulator [Brucella ceti str. Cudo] gi|260918664|gb|EEX85317.1| two component transcriptional regulator [Brucella ceti B1/94] gi|261736381|gb|EEY24377.1| response regulator receiver [Brucella sp. F5/99] gi|262550869|gb|EEZ07030.1| two component transcriptional regulator [Brucella ceti M490/95/1] Length = 225 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +LI+D ++ +G ++ + L+ SAR D+ ++ L G+G Sbjct: 3 IILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHNYMESARYDLVLLDLMLPDGQG--- 59 Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R +R P+I ++ + + ++G DD + KP E+ AR+ A+ RR Sbjct: 60 LSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRY 119 Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N E G +++ + G L RE +LE + + G+ ++K Q+ +Y Sbjct: 120 SGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD VE N +E H+S+LRK KLG +++ R +GY + Sbjct: 180 S-FDTEVESNTMEVHVSRLRK----KLGHAIIETVRGIGYRL 216 >gi|170725025|ref|YP_001759051.1| two component transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169810372|gb|ACA84956.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 224 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 9/151 (5%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128 P+I ++ ++ F++G DD + KP H +E+L R+ A+ +R N Sbjct: 72 HTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHTQELLVRINALIQRAHGKANSPSKELS 131 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 I + D + VQ E F L E R+L+ + + K ++K Q+ +Y FD+ E Sbjct: 132 YAGITLDEDQQSVMVQEEKFELTAMEFRLLKIFIMSPKKLLSKAQLTDKLYQ-FDDEKES 190 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 NVVE +++ LRK KLG ++++R GY Sbjct: 191 NVVEVYVTHLRK----KLGKTSIETRRGQGY 217 >gi|116695189|ref|YP_840765.1| response regulator [Ralstonia eutropha H16] gi|113529688|emb|CAJ96035.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 224 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 8/154 (5%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127 A VP++ ++ S ++ D+G DD + KP E+LAR+ A+ RR + + Sbjct: 69 AQVGVPVLILTARDSWTEKVEGIDAGADDYLAKPFRMEELLARIRALIRRAHGMPAPELQ 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 GP+R+ V G L E R+L+YLM + G V+KT + IY FD + Sbjct: 129 CGPVRMNPRAGKVTVDGTPVALTSHEFRVLDYLMHHPGAIVSKTALTEHIYAQDFDR--D 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N +E + +LR+ KLG D +++ R GY + Sbjct: 187 SNTIEVFVGRLRR----KLGVDVIETVRGQGYRM 216 >gi|228901257|ref|ZP_04065454.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 4222] gi|228921393|ref|ZP_04084716.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228939836|ref|ZP_04102413.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228965658|ref|ZP_04126739.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar sotto str. T04001] gi|228972725|ref|ZP_04133324.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979309|ref|ZP_04139646.1| Two-component response regulator vanRB [Bacillus thuringiensis Bt407] gi|229045415|ref|ZP_04192076.1| Two-component response regulator vanRB [Bacillus cereus AH676] gi|229110168|ref|ZP_04239744.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15] gi|229150932|ref|ZP_04279143.1| Two-component response regulator vanRB [Bacillus cereus m1550] gi|229190816|ref|ZP_04317809.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876] gi|228592686|gb|EEK50512.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876] gi|228632492|gb|EEK89110.1| Two-component response regulator vanRB [Bacillus cereus m1550] gi|228673360|gb|EEL28628.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15] gi|228724953|gb|EEL76249.1| Two-component response regulator vanRB [Bacillus cereus AH676] gi|228780417|gb|EEM28647.1| Two-component response regulator vanRB [Bacillus thuringiensis Bt407] gi|228786940|gb|EEM34920.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794066|gb|EEM41588.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar sotto str. T04001] gi|228819767|gb|EEM65815.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228838166|gb|EEM83484.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228858375|gb|EEN02838.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 4222] Length = 214 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 7/163 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 E+ ++IR+ S VP+I ++ + + FD G+DD + KP ++ RV A+ RR Sbjct: 56 FEVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSY 115 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K NN +R+ D V L +E IL+ L N K + + I ++ Sbjct: 116 DKNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVW 175 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +D E ++++HI LRK KL + + + +GY ID Sbjct: 176 G-YDYFGETRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 213 >gi|225848555|ref|YP_002728718.1| transcriptional activator protein IrlR [Sulfurihydrogenibium azorense Az-Fu1] gi|225644100|gb|ACN99150.1| transcriptional activator protein IrlR [Sulfurihydrogenibium azorense Az-Fu1] Length = 222 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 3/160 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L +I + + P+I ++ ++ ++ D+G DD + KP E+LAR+ A+ RR K + Sbjct: 63 LIKIRNSSIKTPVIVLTAKDEVKDKIELLDAGADDYITKPFDFDELLARIRAVVRRDKDI 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ G + + + G + L +E +L Y + NRGK + K + +A+Y L Sbjct: 123 KSSVISIGDLEIDLSKSTVKKSGNLIKLSSKEYLLLRYFIFNRGKILTKDNLINAVYDLS 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E + N +E IS+LR K+ ++ + S R LGY D Sbjct: 183 FE-LNSNALEVLISRLRSKIEDE-NHKYIKSIRGLGYIFD 220 >gi|163749364|ref|ZP_02156613.1| DNA-binding response regulator [Shewanella benthica KT99] gi|161331083|gb|EDQ02009.1| DNA-binding response regulator [Shewanella benthica KT99] Length = 224 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 83/154 (53%), Gaps = 17/154 (11%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P+I ++ ++ F++G DD + KP H +E+LAR+ A+ +R ++ +A P + Sbjct: 73 TPVIMLTARSQWHEKVEGFNAGADDYLGKPFHTQELLARIHALIQR---AHGKASL-PTK 128 Query: 133 VFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 S + + V+G+ F L E R+L+ + + K ++K+Q+ +Y FD+ Sbjct: 129 ELSFSGVVLDENQQSVSVEGKSFELTAMEFRLLKIFLMSPKKLLSKSQLSDKLYQ-FDDE 187 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E NVVE +++ LRK KLG ++++R GY Sbjct: 188 KESNVVEVYVTHLRK----KLGKTTIETRRGQGY 217 >gi|330719832|gb|EGG98328.1| Two-component system regulatory protein [gamma proteobacterium IMCC2047] Length = 227 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 90/162 (55%), Gaps = 3/162 (1%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +EL R +RA+ + +P++ ++ + Q ++ ++G DD + KP H E+LAR+ A+ RR Sbjct: 60 IELIRQLRANDRSMPVLILTARDNWQDKVEGLEAGADDYLAKPFHMEELLARLNALIRRA 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++ + G +++ + + + L E ++LEYLM N K ++KT++ IY Sbjct: 120 AGKADSTIKIGYLQLDIRTQQVLAREQQVSLTAYEYKVLEYLMLNPQKVISKTELTEHIY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + NV+E I +LRKKL +P+++ R GY + Sbjct: 180 AQ-DYDRDSNVIEVFIGRLRKKLDPDNLHNPIETLRGRGYRL 220 >gi|271962512|ref|YP_003336708.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505687|gb|ACZ83965.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 229 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 14/169 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRSLRQRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRQGD 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + GP+R+ D V+G+ LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 VEELESAVLAAGPVRMDVDRHIVAVRGQQVQLPLKEFELLEVLLRNAGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 +G D + ++ H+ +LR K+ + DP + + R LGY D Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKVES----DPSNPRCILTVRGLGYKFD 225 >gi|53712868|ref|YP_098860.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|60681087|ref|YP_211231.1| putative two-component response regulator [Bacteroides fragilis NCTC 9343] gi|253563148|ref|ZP_04840605.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|265762967|ref|ZP_06091535.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_16] gi|52215733|dbj|BAD48326.1| two-component system response regulator [Bacteroides fragilis YCH46] gi|60492521|emb|CAH07292.1| putative two-component response regulator [Bacteroides fragilis NCTC 9343] gi|251946924|gb|EES87206.1| two-component system response regulator [Bacteroides sp. 3_2_5] gi|263255575|gb|EEZ26921.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_16] gi|301162575|emb|CBW22122.1| putative two-component response regulator [Bacteroides fragilis 638R] Length = 229 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 81/153 (52%), Gaps = 12/153 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G K+ L + + +QVP+I I+ + T+ F+ G DD ++KP RE++ARV A+ Sbjct: 61 GFKMANLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVL 120 Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 RR S+ E P ++ + + GE PL ++E IL L+ N+G+ + Sbjct: 121 RRTATSD--TEKAPEQLCYQSLVIDITKKKVSIDGEEVPLTKKEFEILFLLLQNKGRVFS 178 Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201 + I S I+ DE V + ++ +I++LRKK+ Sbjct: 179 REDILSRIWS--DEVYVLDRTIDVNITRLRKKI 209 >gi|312144080|ref|YP_003995526.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] gi|311904731|gb|ADQ15172.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] Length = 229 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ IR S +P+I ++ L+ + D+G DD + KP E+LAR+ A+ RR K Sbjct: 62 IEVCNKIREFSDLPIIMLTAKSELEDKVAGLDTGADDYLTKPFEIEELLARIRALLRRDK 121 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S N I V D + G+ L ++E +L YL+ N G V++ ++ + + Sbjct: 122 GTIESANILNISDIEVNLDAHQVKRAGQKIELTKKEYDLLVYLIKNEGIVVSRDKLLNNV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +G ++ E N+V+ +I LR K+ + + R +GY Sbjct: 182 WG-YNYTGETNIVDVYIRYLRSKIDEPFEEKLIHTVRGVGY 221 >gi|304406669|ref|ZP_07388324.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344202|gb|EFM10041.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 242 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 90/159 (56%), Gaps = 7/159 (4%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SNN 124 R ++ VP++ ++ + + D+G DD + KP +E+++R+ AI+RR++ SN+ Sbjct: 71 RQNNAVPIVMLTALQDVTDKISGLDNGADDYMTKPFSPQELISRIQAIFRRVQALPGSND 130 Query: 125 RA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 E G ++V+ + R+ ++G++ L +E +L +L +RGK +++ Q+ ++ + Sbjct: 131 TVVYEYGRLKVYPEQREVRIEGKLIELTPKEFELLVFLCRHRGKVLSRQQLLHGVWD-YH 189 Query: 183 EAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + +V+ HIS LR K+ +N + + + R +GY + Sbjct: 190 FLGDTRIVDVHISHLRDKIEKNARTPEYIITVRNVGYKL 228 >gi|303240446|ref|ZP_07326963.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302592011|gb|EFL61742.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 232 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 20/201 (9%) Query: 10 LVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 LVK+GY + F D LE FN + + ++ L IR Sbjct: 24 LVKEGYEVETFNDGRKILEAFNKRPADMLIIDIMMPELDG------------FSLCSSIR 71 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNR 125 S VP+I +S + + G DD + KP E++AR+ +I+RR+ K+ N + Sbjct: 72 EKSNVPVIIVSAKDTETDKIAGLTLGSDDYLTKPFSPMELIARIKSIFRRIEMDKIKNEK 131 Query: 126 AET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + + + SD + E+ + L E +L YL N+ K V+++++ ++G FD Sbjct: 132 VQKIKIADVVINSDKKQAEINDKNIGLTNMEFALLYYLAVNKNKAVSRSELLDKVWG-FD 190 Query: 183 EAVEENVVESHISKLRKKLRN 203 VE + I ++RKKL + Sbjct: 191 NEVETRATDDMIKRVRKKLTD 211 >gi|304317383|ref|YP_003852528.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778885|gb|ADL69444.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 222 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 98/198 (49%), Gaps = 16/198 (8%) Query: 10 LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+ + A F +DG ++ F + F+ L D+S G VL + IR Sbjct: 21 LEKNNFDAFFAEDGNTGIDMFKNNSFDIVLLDVMLPDMS---------GWNVL---KTIR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRA 126 S++P++ I+ L F+ G DD V KP RE++AR+ AI R K S+N Sbjct: 69 ESSKIPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVVARIKAILSRSKWAESDNLI 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 I + +D R +V G+ L +E +L L N GK +++ + + ++G ++ + Sbjct: 129 SFSGITIDTDSRVVKVDGKKIDLTPKEFDLLSLLAQNMGKALSREKCLNVVWG-YEFFGD 187 Query: 187 ENVVESHISKLRKKLRNK 204 V++HI +LR+KL +K Sbjct: 188 LRTVDTHIKQLREKLGDK 205 >gi|103486293|ref|YP_615854.1| two component transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976370|gb|ABF52521.1| two component transcriptional regulator, winged helix family [Sphingopyxis alaskensis RB2256] Length = 221 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L R R P++ ++ S + D+G DD + KP E++AR+ A+ RR Sbjct: 63 LDRWRREKRNFPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRASGN 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 +++ G +R+ + + GE L +E ++L YL+ ++GK V++T++ IY Sbjct: 123 ASSELTAGDVRLDTRSGRVTLAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQD 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + N +E ++++RK KLG D + + R LGY +D Sbjct: 183 FDR--DSNTIEVFVTRIRK----KLGADIITTIRGLGYQLD 217 >gi|330990821|ref|ZP_08314777.1| Transcriptional regulatory protein qseB [Gluconacetobacter sp. SXCC-1] gi|329762261|gb|EGG78749.1| Transcriptional regulatory protein qseB [Gluconacetobacter sp. SXCC-1] Length = 223 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 10/205 (4%) Query: 20 GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIRAHSQVPLIGI 78 G DG +++ F +LE ++ D ++ L G G +L R R S + ++ Sbjct: 21 GLDGHAVDWFTTLEDARAAMATVDYDFMLLDLGLPDGSGRDLLREVR--RTSSDIAILIT 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSD 136 + + + G DD + KP E++AR+AA+ RR A G I + + Sbjct: 79 TAEDQISDRIAGLSEGADDYIVKPYDLNELVARIAAVARRYASPRRHAHCRVGEITIDRE 138 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 R GE L RE I+E L + G+ ++ QI +A+Y L D V+ N VE IS+ Sbjct: 139 NRSVSRDGERLDLTAREWSIMELLSRSPGRIYSRQQIDTALYAL-DRDVDSNTVEVFISR 197 Query: 197 LRKKLRNKLGFDPVDSKRFLGYSID 221 LR+K+ N + + + R GY +D Sbjct: 198 LRRKVGNTV----IRTIRGRGYCLD 218 >gi|317404886|gb|EFV85256.1| winged helix family Two component Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 221 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 56/220 (25%), Positives = 103/220 (46%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + A G G ++ SL + ++ ++ + G+ V Sbjct: 3 ILLVEDDASIASAIQAGLGLQGFVVDAVGSLRQADLAVGTSHASACVLD-LCLPDGDGVT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +P++ ++ S+ + +G DD V KP E+ AR+ A+ RR Sbjct: 62 LLAKWRARRQDLPVLVLTARSSIAQRVAALRAGADDYVLKPFDLDELAARLQALIRRAAG 121 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S +R + G + ++ + + G L RRE +L+ L+ + G+ + Q+ ++YG Sbjct: 122 HSADRIDHGRLTLYLSRGEVLLDGARVTLQRRELALLKTLLQHPGQILTMDQLRDSLYG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD+ VE N V HI KLR+ KLG +++ R GY + Sbjct: 181 FDDRVESNAVNVHIHKLRR----KLGAGLIETVRGWGYRL 216 >gi|313888836|ref|ZP_07822497.1| putative response regulator ArlR [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845205|gb|EFR32605.1| putative response regulator ArlR [Peptoniphilus harei ACS-146-V-Sch2b] Length = 222 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 85/170 (50%), Gaps = 18/170 (10%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ ++ R S +P+I +S + + G DD + KP + A++ + ++ Sbjct: 63 LEIIKLTRQTSSIPIIVLSAIDLESYIISAINLGADDYLTKPFSLGILEAKIKRAFEKIV 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF-------PLPRRERRILEYLMANRGKRVAKTQI 173 S + P + DG D +F L R E +IL YL+ N+ + +AK + Sbjct: 123 SS----DLNPYK--KDGLDFNFNKNIFYVDNKNIDLTRTETKILYYLIKNKSQVIAKELL 176 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 F ++G+ DE +++N + +IS++R KL+ +DP+++ +GY WN Sbjct: 177 FDFVWGIDDEYIDQNTLSVNISRIRNKLK---PYDPIETVFGVGYK--WN 221 >gi|229161599|ref|ZP_04289579.1| Two-component response regulator vanRB [Bacillus cereus R309803] gi|228621844|gb|EEK78690.1| Two-component response regulator vanRB [Bacillus cereus R309803] Length = 214 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 7/163 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 E+ ++IR+ S VP+I ++ + + FD G+DD + KP ++ RV A+ RR Sbjct: 56 FEVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSY 115 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K NN +R+ D V L +E IL+ L N K + + I ++ Sbjct: 116 DKNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVW 175 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +D E ++++HI LRK KL + + + +GY ID Sbjct: 176 G-YDYFGETRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 213 >gi|319949621|ref|ZP_08023661.1| two-component response regulator RegX3 [Dietzia cinnamea P4] gi|319436708|gb|EFV91788.1| two-component response regulator RegX3 [Dietzia cinnamea P4] Length = 229 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 24/219 (10%) Query: 10 LVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+G+ + + GD +LE F S E + L+ G ++ + +R Sbjct: 21 LRKEGFEVGVAGDGPSALESFES------------EGADIVLLDLMLPGMSGTDVCKRLR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126 S VP+I ++ S + + G DD V KP RE++AR+ A+ RR + Sbjct: 69 MTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGAEAEAEPVE 128 Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 E+GP+R+ + V+G LP +E +LEYL+ N G+ + + Q+ ++G Sbjct: 129 EIGVLESGPVRMDIERHTVMVRGAAVTLPLKEFDLLEYLLRNSGRVLTRGQLIDRVWG-S 187 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGY 218 D + ++ H+ +LR K+ G PV + R LGY Sbjct: 188 DYVGDTKTLDVHVKRLRSKIETDPG-KPVHLVTVRGLGY 225 >gi|210617395|ref|ZP_03291559.1| hypothetical protein CLONEX_03781 [Clostridium nexile DSM 1787] gi|210149325|gb|EEA80334.1| hypothetical protein CLONEX_03781 [Clostridium nexile DSM 1787] Length = 246 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 7/164 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R +R + ++ +S + ++ D+G +D + KP H +E+ ARV ++ RR Sbjct: 80 MEILRELRKEDEETKVLILSARSQIADKIEGLDAGANDYMEKPFHLQELEARVRSLTRRK 139 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N E IR R + L R+E ILEYL+ N+G+ V++ ++ ++ Sbjct: 140 FIQKNVCLECNGIRFDIRERVAYAEENPVALTRKENGILEYLLLNQGRPVSQEELIEHVW 199 Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +V + H+S LR+KL+ LG+DP+ ++ GY I Sbjct: 200 ---DSSVNSFSGSIRVHMSSLRRKLKAGLGYDPIVNRIGEGYKI 240 >gi|170751941|ref|YP_001758201.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658463|gb|ACB27518.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 233 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 3/144 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R A + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVGGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRN 203 DE E +++ I KLRKKL N Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLAN 203 >gi|308068988|ref|YP_003870593.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305858267|gb|ADM70055.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 222 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 7/195 (3%) Query: 31 SLEFE--EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88 ++E+E + L+S+ E+ I L+ G +E+ R IR Q P+I ++ + + Sbjct: 29 TVEYEGRKGLESALSEEWDIILLDLMLPGINGIEVCRRIRKTKQTPIIMLTARDGVMDKV 88 Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGE 145 DSG DD + KP E+LAR+ ++ RR ++ S G + + S+ R + Sbjct: 89 MGLDSGADDYIPKPFAIEELLARMRSLLRRSGFVEDSKQITYNGLV-LDSEARILTKDQQ 147 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 + L +RE +L LM N G+ + + ++ I+G +D VE NVV+ +I LR K+ Sbjct: 148 IIELTKREFDLLSILMHNIGRVMTRERLLELIWG-YDSEVETNVVDVYIRYLRSKIDEPG 206 Query: 206 GFDPVDSKRFLGYSI 220 + + R LGY I Sbjct: 207 EASFIQTLRGLGYVI 221 >gi|300689759|ref|YP_003750754.1| response regulator, cheY family [Ralstonia solanacearum PSI07] gi|299076819|emb|CBJ49429.1| putative response regulator, CheY family [Ralstonia solanacearum PSI07] Length = 224 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 4/147 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPI 131 VP++ ++ + + +G DD + KP RE++AR+ + RR +N + G + Sbjct: 73 VPVMILTASGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNTPANAVELQCGDL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 S R + G LP RE +LE LM G+ V+K + + ++GL D+A E +E Sbjct: 133 SYHSGSRTFALAGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFGLEDDASPE-AIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 +I +LRKKL + + + R LGY Sbjct: 192 IYIHRLRKKLEHSAA--TIVTLRGLGY 216 >gi|121601947|ref|YP_989297.1| cell cycle transcriptional regulator CtrA [Bartonella bacilliformis KC583] gi|120614124|gb|ABM44725.1| cell cycle transcriptional regulator CtrA [Bartonella bacilliformis KC583] Length = 233 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL R+ A + P++ +S S++ + F G DD + KP H E++AR+ A+ Sbjct: 59 GYDVLRTLRL--AKIKTPVLILSGMASIEDKVRGFGFGADDYMTKPFHKDELIARIHAVV 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + TG + V D + EV G L +E ++LE L +G + K + Sbjct: 117 RRSKGHAQSVIVTGDLIVNLDTKTVEVAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +YG DE E +++ I KLRKKL Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201 >gi|300022650|ref|YP_003755261.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299524471|gb|ADJ22940.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 223 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 10/166 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +LE R R+ ++P+I ++ + D+G DD + KP H E+LARV A Sbjct: 59 GISILEQWR--RSDRKMPVILLTARDRWSDKVTGMDAGADDYLAKPFHMEELLARVRAQI 116 Query: 117 RRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + E GPIR+ + G L E R+L YLM + G+ V++T++ Sbjct: 117 RRASGHVKSEIECGPIRLDTKSARVTCDGLPVKLTSHEFRLLAYLMHHNGRVVSRTELVE 176 Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y FD + N +E I +LRKK+ D + + R LGY + Sbjct: 177 HLYDQDFDR--DSNTIEVFIGRLRKKIPG----DVIQTVRGLGYRM 216 >gi|107103873|ref|ZP_01367791.1| hypothetical protein PaerPA_01004944 [Pseudomonas aeruginosa PACS2] gi|254238491|ref|ZP_04931814.1| PmrA: two-component regulator system response regulator PmrA [Pseudomonas aeruginosa C3719] gi|254244323|ref|ZP_04937645.1| PmrA: two-component regulator system response regulator PmrA [Pseudomonas aeruginosa 2192] gi|313109760|ref|ZP_07795699.1| two-component response regulator [Pseudomonas aeruginosa 39016] gi|126170422|gb|EAZ55933.1| PmrA: two-component regulator system response regulator PmrA [Pseudomonas aeruginosa C3719] gi|126197701|gb|EAZ61764.1| PmrA: two-component regulator system response regulator PmrA [Pseudomonas aeruginosa 2192] gi|310882201|gb|EFQ40795.1| two-component response regulator [Pseudomonas aeruginosa 39016] Length = 221 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 46/135 (34%), Positives = 70/135 (51%), Gaps = 12/135 (8%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146 DSG DD + KP E+ ARV A+ RR + RA G +R+ + G+ Sbjct: 91 LDSGADDYLTKPFDLDELQARVRALTRR---TTGRALPQLVHGELRLDPATHQVTLSGQA 147 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L RE +L L+ N GK +++ Q+ ++YG + VE N +E H+ LR+KL N+L Sbjct: 148 VELAPREYALLRLLLENSGKVLSRNQLEQSLYG-WSGDVESNAIEVHVHHLRRKLGNQL- 205 Query: 207 FDPVDSKRFLGYSID 221 + + R +GY ID Sbjct: 206 ---IRTVRGIGYGID 217 >gi|22125688|ref|NP_669111.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis KIM 10] gi|108807885|ref|YP_651801.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis Antiqua] gi|108812159|ref|YP_647926.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis Nepal516] gi|149366402|ref|ZP_01888436.1| response regulator protein [Yersinia pestis CA88-4125] gi|165925538|ref|ZP_02221370.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Orientalis str. F1991016] gi|165938457|ref|ZP_02227014.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Orientalis str. IP275] gi|166008412|ref|ZP_02229310.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Antiqua str. E1979001] gi|166210640|ref|ZP_02236675.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Antiqua str. B42003004] gi|167401723|ref|ZP_02307214.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421718|ref|ZP_02313471.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426336|ref|ZP_02318089.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469318|ref|ZP_02334022.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Yersinia pestis FV-1] gi|218928770|ref|YP_002346645.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis CO92] gi|229841621|ref|ZP_04461779.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843738|ref|ZP_04463881.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Yersinia pestis biovar Orientalis str. India 195] gi|229902480|ref|ZP_04517599.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Yersinia pestis Nepal516] gi|270490340|ref|ZP_06207414.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294504168|ref|YP_003568230.1| response regulator protein [Yersinia pestis Z176003] gi|21958603|gb|AAM85362.1|AE013782_3 transcriptional regulatory protein [Yersinia pestis KIM 10] gi|1621018|emb|CAA70004.1| PhoP protein [Yersinia pestis] gi|108775807|gb|ABG18326.1| response regulator protein [Yersinia pestis Nepal516] gi|108779798|gb|ABG13856.1| response regulator protein [Yersinia pestis Antiqua] gi|115347381|emb|CAL20279.1| response regulator protein [Yersinia pestis CO92] gi|149290776|gb|EDM40851.1| response regulator protein [Yersinia pestis CA88-4125] gi|165913572|gb|EDR32192.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Orientalis str. IP275] gi|165922647|gb|EDR39798.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Orientalis str. F1991016] gi|165992794|gb|EDR45095.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Antiqua str. E1979001] gi|166207820|gb|EDR52300.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Antiqua str. B42003004] gi|166960203|gb|EDR56224.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048828|gb|EDR60236.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054691|gb|EDR64495.1| transcriptional regulatory protein PhoP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680526|gb|EEO76623.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Yersinia pestis Nepal516] gi|229689346|gb|EEO81409.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Yersinia pestis biovar Orientalis str. India 195] gi|229694084|gb|EEO84132.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Yersinia pestis biovar Orientalis str. PEXU2] gi|262362285|gb|ACY59006.1| response regulator protein [Yersinia pestis D106004] gi|262366219|gb|ACY62776.1| response regulator protein [Yersinia pestis D182038] gi|270338844|gb|EFA49621.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294354627|gb|ADE64968.1| response regulator protein [Yersinia pestis Z176003] gi|320014777|gb|ADV98348.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 223 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 113/224 (50%), Gaps = 7/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G ++ ++ E + +LQ A D++ I+ L GE L Sbjct: 4 LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHA-PDIAIIDLGL--PGEDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L R R+H + +P++ ++ S Q + ++G DD V KP H E++AR+ A+ RR + Sbjct: 61 SLIRRWRSHQENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNI 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ E P ++ R+ V + L E I+E L+ N GK V+K + +Y Sbjct: 121 GLASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E E + ++ + +LRKKL + + + + R GY D N Sbjct: 181 -DAELRESHTIDVLMGRLRKKLLAEHQGEVITTIRSQGYRFDVN 223 >gi|331088794|ref|ZP_08337704.1| hypothetical protein HMPREF1025_01287 [Lachnospiraceae bacterium 3_1_46FAA] gi|330407317|gb|EGG86820.1| hypothetical protein HMPREF1025_01287 [Lachnospiraceae bacterium 3_1_46FAA] Length = 226 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 5/205 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 +F+L DD+ L K IAL D+ + LE + Q + D+ ++ L G G Sbjct: 9 IFLLEDDKILSKGISIALKKDEHTVTAVYGYLEALQQYQKQ-KYDLFLLDINLPDGNG-- 65 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE + IR S+ P++ ++ + + L+ F G DD ++KP + +V A+ +R Sbjct: 66 -LEFCKKIRETSETPVLFLTANDTEEDMLEGFGVGCDDYISKPFSIEVLRKKVLAVLKRT 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R + + + + ++G+ L E ++L YLM NRG+ V K + ++ Sbjct: 125 GIGKFRMKYRDLELDKEKCVVLMKGQEIHLTSTEYKLLLYLMENRGRVVTKAMLLEQLWD 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 + V++N V +I +LR+KL ++ Sbjct: 185 IDGNFVDDNTVRVNIKRLRQKLHDE 209 >gi|153008899|ref|YP_001370114.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|223635103|sp|A6WZ81|CTRA_OCHA4 RecName: Full=Cell cycle response regulator CtrA gi|151560787|gb|ABS14285.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] Length = 232 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 3/142 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G+ L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 DE E +++ I KLRKKL Sbjct: 181 GMDEP-ELKIIDVFICKLRKKL 201 >gi|52144737|ref|YP_082091.1| response regulator [Bacillus cereus E33L] gi|51978206|gb|AAU19756.1| probable response regulator [Bacillus cereus E33L] Length = 229 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 77 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 136 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 137 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 195 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE +I LRKKL G+ + + R +GY Sbjct: 196 VEVYIHHLRKKL-EPFGYQKDIQTVRGIGY 224 >gi|56479487|ref|YP_161076.1| two component response regulator [Aromatoleum aromaticum EbN1] gi|56315530|emb|CAI10175.1| Two component response regulator [Aromatoleum aromaticum EbN1] Length = 220 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 95/183 (51%), Gaps = 14/183 (7%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100 DV ++A ++ G +++ +++ A +P++ ++ + + D+G DD + Sbjct: 41 DVEPLDAVVLDLGLPLMDGITVLKKWRAAGRTMPVLILTARDNWHEKVAGIDAGADDYLT 100 Query: 101 KPIHHREILARVAAIYRRLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 KP H E+LAR+ A+ RR + AE GP+ + + V G+ L E R+L+ Sbjct: 101 KPFHMEELLARLRALIRRAG-GHASAELACGPVLLDTRAGRVSVNGDAVNLTSHELRVLD 159 Query: 159 YLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217 YLM ++G+ V+++ + IY FD + N +E I +LRKKL + +++ R LG Sbjct: 160 YLMHHQGEIVSRSDLTEHIYAQDFDR--DSNTIEVFIGRLRKKLPAGM----IETVRGLG 213 Query: 218 YSI 220 Y + Sbjct: 214 YRM 216 >gi|226948577|ref|YP_002803668.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226841560|gb|ACO84226.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 230 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 6/139 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123 IR S +P+I ++ S ++ D G DD + KP RE+++RV AI RR SN Sbjct: 67 IRKTSNIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAIIRR--TSNDCD 124 Query: 124 -NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N ++ I + + E G+ L + E ++L+Y M N K ++K QI ++ + Sbjct: 125 FNIIQSKDIVFYINEMKIEKHGKEIFLSKTELKLLQYFMKNYQKILSKEQIIENLWNIDG 184 Query: 183 EAVEENVVESHISKLRKKL 201 E + EN V +I ++R+K+ Sbjct: 185 EFINENTVAVNIRRIREKI 203 >gi|206971770|ref|ZP_03232719.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134] gi|218897743|ref|YP_002446154.1| transcriptional regulatory protein ResD [Bacillus cereus G9842] gi|229179004|ref|ZP_04306361.1| Two-component response regulator vanRB [Bacillus cereus 172560W] gi|206733155|gb|EDZ50328.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134] gi|218541190|gb|ACK93584.1| transcriptional regulatory protein ResD [Bacillus cereus G9842] gi|228604372|gb|EEK61836.1| Two-component response regulator vanRB [Bacillus cereus 172560W] gi|326940485|gb|AEA16381.1| two-component response regulator VanRB [Bacillus thuringiensis serovar chinensis CT-43] Length = 221 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 20/215 (9%) Query: 10 LVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L+ Y + DG+ + FN F+ L +++ E+ ++IR Sbjct: 23 LMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNG------------FEVSKMIR 70 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRA 126 + S VP+I ++ + + FD G+DD + KP ++ RV A+ RR K NN Sbjct: 71 SQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNVNNHL 130 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 +R+ D V L +E IL+ L N K + + I ++G +D E Sbjct: 131 IFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YDYFGE 189 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++++HI LRK KL + + + +GY ID Sbjct: 190 TRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 220 >gi|294630055|ref|ZP_06708615.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] gi|292833388|gb|EFF91737.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] Length = 226 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 10/159 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 +G D + ++ H+ +LR K+ G + RFL Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG-----APRFL 214 >gi|28209933|ref|NP_780877.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28202368|gb|AAO34814.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 238 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 65/141 (46%), Gaps = 7/141 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +P+I IS P + G DD + KP E+LARV + RR V +++ Sbjct: 75 IRKFKTMPIIVISAKPGQDIKIKVLKLGADDFICKPFDTNEVLARVESQLRRYTVFSSKN 134 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + I + D + V+GE L RE ILE LM+N+ K K +F + Sbjct: 135 KEKNILTYKDLSLNKETLEVAVKGEYISLTAREFTILELLMSNQKKVFTKANLFEHAWNE 194 Query: 181 FDEAVEENVVESHISKLRKKL 201 D + N V HIS +R KL Sbjct: 195 -DFFCDHNTVNVHISNIRSKL 214 >gi|125973317|ref|YP_001037227.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256006166|ref|ZP_05431082.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281417519|ref|ZP_06248539.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125713542|gb|ABN52034.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255989869|gb|EEU00035.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281408921|gb|EFB39179.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316940451|gb|ADU74485.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 225 Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 3/150 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGP 130 P++ ++ S++ ++ DSG DD + KP E+LAR+ A+ RR N G Sbjct: 73 TPVLILTAKDSVKNRVEGLDSGADDYLTKPFSKSELLARIRALGRRQSEIFVNEEINIGN 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + +V G+ L +E +ILE L+ N+ V+K Q+ ++G F +E N + Sbjct: 133 MSFNCMKGEIKVNGQTIKLTSKESQILEILIKNKNIVVSKEQLLEKVWG-FQTDIELNNI 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++S LRKKL +++ R GY + Sbjct: 192 EVYLSYLRKKLSKLDCGIVIETIRARGYCL 221 >gi|319406806|emb|CBI80439.1| cell cycle transcriptional regulator CtrA [Bartonella sp. 1-1C] Length = 233 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 21/191 (10%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74 YI G++G+ L +++ L D+S E + L L +I + P Sbjct: 28 YITDLGEEGIDLGKL--YDYDIILLDLNLPDMSGYEVL------RTLRLEKI-----KTP 74 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGP 130 ++ +S ++ + F G DD + KP H E++AR+ A+ RR S A+ TG Sbjct: 75 VLILSGMGGIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRR---SKGHAQSVIITGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V D + E+ G L +E ++LE L +G + K + +YG DE E ++ Sbjct: 132 LTVNLDAKTVEIAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190 Query: 191 ESHISKLRKKL 201 + I KLRKKL Sbjct: 191 DVFICKLRKKL 201 >gi|117918698|ref|YP_867890.1| two component transcriptional regulator [Shewanella sp. ANA-3] gi|117611030|gb|ABK46484.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 220 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 85/150 (56%), Gaps = 7/150 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131 +P++ ++ + +D +G DD + KP H E+LAR+ A+ RR ++N + + Sbjct: 73 MPVLILTARDAWHERVDGLKAGADDYLGKPFHVEELLARLEALIRRHFGRADNLLQHAGV 132 Query: 132 RVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + D + +G+V L + E R+L YLMAN K V+K+++ IY ++ + NV+ Sbjct: 133 SLDVDKQAVTNAEGDVIELTKIEYRLLHYLMANPTKIVSKSELSERIYE-EEQIKDSNVI 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E +I++LR+ +LG D ++++R GY + Sbjct: 192 EVYINRLRQ----RLGKDYIETRRGQGYRL 217 >gi|307265327|ref|ZP_07546884.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919611|gb|EFN49828.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 225 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 17/216 (7%) Query: 10 LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L +GY L ++G LE FN+ +D+S I ++ L + IR Sbjct: 21 LENNGYEVLVAENGKAGLEYFNN----------NNKDISIILLDIMLPDISGWSLLKTIR 70 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNR 125 S+VP++ I+ L F+ G DD V KP +E++ARV AI R + + Sbjct: 71 EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTYGASEEDGK 130 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E I + R+ V GE L +E +L+ L+ N+GK V++ + + ++G +D Sbjct: 131 TEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG-YDFYG 189 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V++HI +LR+KL K + + +GY +D Sbjct: 190 DLRTVDTHIKQLREKLGEKRKL--IKTVWGIGYKLD 223 >gi|196046810|ref|ZP_03114032.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196022345|gb|EDX61030.1| DNA-binding response regulator [Bacillus cereus 03BB108] Length = 223 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 71 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 131 EIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 189 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218 >gi|53721734|ref|YP_110719.1| response regulator protein [Burkholderia pseudomallei K96243] gi|52212148|emb|CAH38165.1| response regulator protein [Burkholderia pseudomallei K96243] Length = 223 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L++ R +RA + VP++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 60 LDVLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L + R E GP+ S R + + L RER +LE L+ G+ + K + I+ Sbjct: 120 LGHEHGRVECGPLAFDSVDRIFRLNNDALALTPRERSVLEVLILRNGRAINKETLSEKIF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL DE+V + +E ++ +LRKKL G V + R LGY ++ Sbjct: 180 GL-DESVNADAIEIYVHRLRKKLEGS-GVAIV-TLRGLGYLLE 219 >gi|89069529|ref|ZP_01156873.1| DNA-binding response regulator CtrA [Oceanicola granulosus HTCC2516] gi|89044864|gb|EAR50954.1| DNA-binding response regulator CtrA [Oceanicola granulosus HTCC2516] Length = 238 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 3/143 (2%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R A + P++ ++ ++ L F G DD + KP H E++AR+ AI RR Sbjct: 60 LEVLRQLRLARIETPILVLTGDDGTESKLRSFGFGADDYLTKPFHREELVARIHAIIRRS 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + + +TG I V D + EV G L +E ++ E L +G + K + +Y Sbjct: 120 KGHAQSIIKTGRILVNLDAKTVEVDGVPVHLTGKEYQMFELLSLRKGTTLTKEMFLNHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G DE E +++ I KLRKKL Sbjct: 180 GGMDEP-ELKIIDVFICKLRKKL 201 >gi|291037441|ref|ZP_06568405.1| two component response regulator KdpE [Gluconacetobacter xylinus NBRC 3288] Length = 223 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 10/205 (4%) Query: 20 GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIRAHSQVPLIGI 78 G DG +++ F +LE ++ D ++ L G G +L R R S + ++ Sbjct: 21 GLDGHAVDWFTTLEDARAAMATVDYDFILLDLGLPDGSGRDLLREVR--RTSSDIAILIT 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSD 136 + + + G DD + KP E++AR+AA+ RR +A G I + + Sbjct: 79 TAEDQISDRIAGLSEGADDYIVKPYDLNELVARIAAVARRYASPRRQAHCRVGEITIDRE 138 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 R GE L RE I+E L + G+ ++ QI + +Y L D V+ N VE IS+ Sbjct: 139 NRSVSRDGERLDLTAREWSIMELLSRSPGRIYSRQQIDTVLYAL-DREVDSNTVEVFISR 197 Query: 197 LRKKLRNKLGFDPVDSKRFLGYSID 221 LR+KL N + + + R GY +D Sbjct: 198 LRRKLGNNV----IRTIRGRGYCLD 218 >gi|170745397|ref|YP_001766854.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658998|gb|ACB28052.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 233 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 3/144 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R A + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRSLRVAKVKTPILILSGMAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVITTGDLIVNLDQKTVEVGGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRN 203 DE E +++ I KLRKKL N Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLAN 203 >gi|120600316|ref|YP_964890.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|146291755|ref|YP_001182179.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|120560409|gb|ABM26336.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] gi|145563445|gb|ABP74380.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] gi|319424991|gb|ADV53065.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 224 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 79/150 (52%), Gaps = 9/150 (6%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----YRRLKVSNNRAET 128 P+I ++ ++ F++G DD + KP H +E+LAR+ A+ + RL + + Sbjct: 73 TPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAHGRLNTPSKQLTY 132 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + + +V ++ L E R+L+ + + K ++K Q+ +Y FD+ E N Sbjct: 133 GGVTLDETEQTVKVADHLYELTAMEFRLLKIFLMSPKKLLSKAQLTDKLYQ-FDDEKESN 191 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VVE +++ LRK KLG ++++R GY Sbjct: 192 VVEVYVTHLRK----KLGKTAIETRRGQGY 217 >gi|88811133|ref|ZP_01126389.1| DNA-binding response regulator [Nitrococcus mobilis Nb-231] gi|88791672|gb|EAR22783.1| DNA-binding response regulator [Nitrococcus mobilis Nb-231] Length = 224 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 15/165 (9%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R RA +P++ ++ + +D F +G DD + KP H E+LARV A+ RR Sbjct: 60 LEMLRGWRAAGNPIPVLILTARDAWYERVDGFKAGADDYLGKPFHTEELLARVGALLRR- 118 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQI 173 ++ + +GP++ D E Q + P L E R+L Y M N + ++K ++ Sbjct: 119 --AHRQQPSGPLQSAGLVLDEEEQKVILPDQQPVRLTATEFRLLRYFMLNPQRLLSKARL 176 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y D + NV+E ++++LR+ KLG D ++++R GY Sbjct: 177 TEHVYA-EDGDPDSNVLEVYVNRLRR----KLGSDYIETRRGQGY 216 >gi|75763337|ref|ZP_00743078.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228908456|ref|ZP_04072299.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 200] gi|74489174|gb|EAO52649.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228851247|gb|EEM96058.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 200] Length = 228 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 20/215 (9%) Query: 10 LVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L+ Y + DG+ + FN F+ L +++ E+ ++IR Sbjct: 30 LMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNG------------FEVSKMIR 77 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRA 126 + S VP+I ++ + + FD G+DD + KP ++ RV A+ RR K NN Sbjct: 78 SQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNVNNHL 137 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 +R+ D V L +E IL+ L N K + + I ++G +D E Sbjct: 138 IFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YDYFGE 196 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++++HI LRK KL + + + +GY ID Sbjct: 197 TRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 227 >gi|237786475|ref|YP_002907180.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237759387|gb|ACR18637.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 228 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 88/173 (50%), Gaps = 8/173 (4%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L+ ++ ++S + L+ G E+ + +R S VP+I ++ + + + G DD Sbjct: 38 LREFSQHEISIVLLDLMLPGMSGTEVCKKLRQSSTVPIIMVTARDTEMDKIVGLELGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNR-------AETGPIRVFSDGRDPEVQGEVFPLP 150 V KP RE++AR+ A+ RR + ++ E G +R+ + V G+ +P Sbjct: 98 YVTKPYSARELIARIRAVLRRGRGTSGPDQFDDEILEVGNVRMDVERHSVWVDGKEISMP 157 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 +E +LEYLM N G+ + + Q+ ++GL D + ++ H+ +LR K+ + Sbjct: 158 LKEFDLLEYLMRNEGRVLTRGQLIDRVWGL-DYVGDTKTLDVHVKRLRSKVED 209 >gi|17989359|ref|NP_541992.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|62317173|ref|YP_223026.1| two component response regulator [Brucella abortus bv. 1 str. 9-941] gi|83269154|ref|YP_418445.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|148557916|ref|YP_001257276.1| DNA-binding response regulator [Brucella ovis ATCC 25840] gi|189022433|ref|YP_001932174.1| Response regulator receiver [Brucella abortus S19] gi|225686080|ref|YP_002734052.1| DNA-binding response regulator [Brucella melitensis ATCC 23457] gi|237816732|ref|ZP_04595724.1| two component response regulator [Brucella abortus str. 2308 A] gi|254691342|ref|ZP_05154596.1| DNA-binding response regulator [Brucella abortus bv. 6 str. 870] gi|254698453|ref|ZP_05160281.1| DNA-binding response regulator [Brucella abortus bv. 2 str. 86/8/59] gi|254699520|ref|ZP_05161348.1| DNA-binding response regulator [Brucella suis bv. 5 str. 513] gi|254706226|ref|ZP_05168054.1| DNA-binding response regulator [Brucella pinnipedialis M163/99/10] gi|254711480|ref|ZP_05173291.1| DNA-binding response regulator [Brucella pinnipedialis B2/94] gi|254731901|ref|ZP_05190479.1| DNA-binding response regulator [Brucella abortus bv. 4 str. 292] gi|256015015|ref|YP_003105024.1| two component response regulator [Brucella microti CCM 4915] gi|256029890|ref|ZP_05443504.1| DNA-binding response regulator [Brucella pinnipedialis M292/94/1] gi|256043150|ref|ZP_05446091.1| DNA-binding response regulator [Brucella melitensis bv. 1 str. Rev.1] gi|256111861|ref|ZP_05452826.1| DNA-binding response regulator [Brucella melitensis bv. 3 str. Ether] gi|256256527|ref|ZP_05462063.1| DNA-binding response regulator [Brucella abortus bv. 9 str. C68] gi|256262794|ref|ZP_05465326.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9] gi|260544408|ref|ZP_05820229.1| response regulator receiver [Brucella abortus NCTC 8038] gi|260564371|ref|ZP_05834856.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M] gi|260756952|ref|ZP_05869300.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260759674|ref|ZP_05872022.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260762916|ref|ZP_05875248.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260882765|ref|ZP_05894379.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261313668|ref|ZP_05952865.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261319091|ref|ZP_05958288.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261749975|ref|ZP_05993684.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|265986906|ref|ZP_06099463.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265989580|ref|ZP_06102137.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265993318|ref|ZP_06105875.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|294853244|ref|ZP_06793916.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|297249884|ref|ZP_06933585.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] gi|306840921|ref|ZP_07473664.1| DNA-binding response regulator [Brucella sp. BO2] gi|17985230|gb|AAL54256.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|62197366|gb|AAX75665.1| two component response regulator [Brucella abortus bv. 1 str. 9-941] gi|82939428|emb|CAJ12388.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Brucella melitensis biovar Abortus 2308] gi|148369201|gb|ABQ62073.1| DNA-binding response regulator [Brucella ovis ATCC 25840] gi|189021007|gb|ACD73728.1| Response regulator receiver [Brucella abortus S19] gi|225642185|gb|ACO02098.1| DNA-binding response regulator [Brucella melitensis ATCC 23457] gi|237787545|gb|EEP61761.1| two component response regulator [Brucella abortus str. 2308 A] gi|255997675|gb|ACU49362.1| two component response regulator [Brucella microti CCM 4915] gi|260097679|gb|EEW81553.1| response regulator receiver [Brucella abortus NCTC 8038] gi|260152014|gb|EEW87107.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M] gi|260669992|gb|EEX56932.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260673337|gb|EEX60158.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260677060|gb|EEX63881.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872293|gb|EEX79362.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261298314|gb|EEY01811.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261302694|gb|EEY06191.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261739728|gb|EEY27654.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262764188|gb|EEZ10220.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263000249|gb|EEZ12939.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263092602|gb|EEZ16837.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9] gi|264659103|gb|EEZ29364.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|294818899|gb|EFG35899.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|297173753|gb|EFH33117.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] gi|306289073|gb|EFM60333.1| DNA-binding response regulator [Brucella sp. BO2] gi|326410408|gb|ADZ67472.1| Response regulator receiver [Brucella melitensis M28] gi|326553701|gb|ADZ88340.1| Response regulator receiver [Brucella melitensis M5-90] Length = 225 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +LI+D ++ +G ++ + L+ SAR D+ ++ L G+G Sbjct: 3 IILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARYDLVLLDLMLPDGQG--- 59 Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R +R P+I ++ + + ++G DD + KP E+ AR+ A+ RR Sbjct: 60 LSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRY 119 Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N E G +++ + G L RE +LE + + G+ ++K Q+ +Y Sbjct: 120 SGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD VE N +E H+S+LRK KLG +++ R +GY + Sbjct: 180 S-FDTEVESNTMEVHVSRLRK----KLGHAIIETVRGIGYRL 216 >gi|152974618|ref|YP_001374135.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023370|gb|ABS21140.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 220 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 94/215 (43%), Gaps = 20/215 (9%) Query: 10 LVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L+ YI DG+ ++ FN F+ L +++ E+ IIR Sbjct: 22 LITQQYIVTVASDGLEGMKQFNKHPFDLILLDVMMPNLNG------------FEVANIIR 69 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRA 126 S +P+I ++ Q + FD G+DD + KP + RV A+ RR + ++N Sbjct: 70 NQSNIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVFIRRVEAVLRRSYGERTDNHL 129 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 I V D V L +E IL+ L+ N+ K + + I ++G ++ E Sbjct: 130 SFKEIHVDCDTYKVYVNKVEISLTAKEFEILQLLLKNKRKVITRENIVERVWG-YEPYGE 188 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++++HI +RKKL + + + +GY ID Sbjct: 189 TRIIDTHIKNIRKKLNTPY----IKTVKGIGYKID 219 >gi|220911625|ref|YP_002486934.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219858503|gb|ACL38845.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 226 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 10/164 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ E+ R +R S VP+I ++ S + + G DD V KP RE++ARV A+ Sbjct: 57 GQSGTEVCRQLRQRSTVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVL 116 Query: 117 RRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR ++ ++ + GP+R+ + V GE LP +E +LE L+ N G+ + + Q Sbjct: 117 RRQGEPEELISSTVQAGPVRMDIERHVVSVDGEQVLLPLKEFELLEMLLRNSGRVLTRGQ 176 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + ++G D + ++ H+ K+LR K+ DP + RFL Sbjct: 177 LIDRVWG-SDYVGDTKTLDVHV----KRLRGKIEPDP-SAPRFL 214 >gi|49474504|ref|YP_032546.1| cell cycle transcriptional regulator ctra [Bartonella quintana str. Toulouse] gi|49240008|emb|CAF26423.1| Cell cycle transcriptional regulator ctra [Bartonella quintana str. Toulouse] Length = 233 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL R+ A + P++ +S +++ + F G DD + KP H E++AR+ A+ Sbjct: 59 GYDVLRTLRL--AKIKTPVLILSGMNAIEDKVRGFGFGADDYMTKPFHKDELIARIHAVV 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + TG + V D + EV G L +E ++LE L +G + K + Sbjct: 117 RRSKGHAQSIIVTGDLTVNLDAKTVEVAGRPVHLTSKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +YG DE E +++ I KLRKKL Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201 >gi|206900228|ref|YP_002251690.1| response regulator ArlR [Dictyoglomus thermophilum H-6-12] gi|206739331|gb|ACI18389.1| response regulator ArlR [Dictyoglomus thermophilum H-6-12] Length = 220 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 105/195 (53%), Gaps = 12/195 (6%) Query: 27 EGFNSL-EFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSL 84 +G+++L E EE+ + DV ++ L G G++V + R+ + + +I ++ + Sbjct: 32 DGYDALIEAEEF-----KPDVVILDIMLPGLSGKEVAK--RLRDKYPDLGIIMLTALGDV 84 Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG 144 + ++ F+ G DD V KP E+LAR+ A+ RR + + I ++ D V G Sbjct: 85 KDKVEAFNLGADDYVVKPFSIEELLARIQAVARRKERKEEVISSEGIELYVDQHRVIVDG 144 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 + L + E +L LM N ++K +I S+I+G +D+ EN+VE +I+ LRKKL +K Sbjct: 145 KEVDLSKTEFSLLYLLMKNENIVLSKEKILSSIWGDYDDE-RENLVEVYINYLRKKLGDK 203 Query: 205 LGFDPVDSKRFLGYS 219 + + + R +GYS Sbjct: 204 GKY--IKTIRGIGYS 216 >gi|148258428|ref|YP_001243013.1| two-component response regulator [Bradyrhizobium sp. BTAi1] gi|146410601|gb|ABQ39107.1| Two-component response regulator [Bradyrhizobium sp. BTAi1] Length = 229 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 6/131 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS---DGRDPEVQGEVF 147 D G DD V KP E++AR A+ RRL + +R I S R V G Sbjct: 97 LDEGADDYVAKPFEPIELVARARAVLRRLYL--DRGAVVSIANLSYDIVNRAVGVDGNPI 154 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 +PRRE ILE L+ G+ V + + SA YG F++ ++ N +E+H+S+LR++LR Sbjct: 155 VVPRRELAILEALVRRSGRVVLRETLESAAYG-FEDEIQSNAIEAHVSRLRRRLREANCK 213 Query: 208 DPVDSKRFLGY 218 + R LGY Sbjct: 214 ATIRPVRGLGY 224 >gi|229173377|ref|ZP_04300921.1| Two-component response regulator vanRB [Bacillus cereus MM3] gi|228610071|gb|EEK67349.1| Two-component response regulator vanRB [Bacillus cereus MM3] Length = 214 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 7/163 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 E+ ++IR+ S +P+I ++ + + FD G+DD + KP ++ RV A+ RR Sbjct: 56 FEVAKMIRSQSNIPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSY 115 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K NN +R+ D V L +E IL+ L N K + + I ++ Sbjct: 116 DKNVNNHLVFKEVRIDVDAYRVYVTDVEILLTTKEFEILQLLFQNERKVLTRENIVEKVW 175 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +D E ++++HI LRK KL + + + +GY ID Sbjct: 176 G-YDYFGETRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 213 >gi|85715363|ref|ZP_01046345.1| two component transcriptional regulatory protein [Nitrobacter sp. Nb-311A] gi|85697784|gb|EAQ35659.1| two component transcriptional regulatory protein [Nitrobacter sp. Nb-311A] Length = 223 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 10/164 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VLE R R +P++ ++ + FD+G DD V KP H EILAR+ A+ Sbjct: 59 GISVLEAWR--RGGRTMPVLILTARDRWSDKVQGFDAGADDYVTKPFHLEEILARMRALL 116 Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + + GP+ + + V G + E R+L YLM + G+ V++T++ Sbjct: 117 RRSTGHAQSELTCGPVTLDTRTGRVSVGGNPIKMTSHEYRLLAYLMHHTGRVVSRTELVE 176 Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y FD + N +E + ++RK KL D + + R LGY Sbjct: 177 HLYDQDFDR--DSNTIEVFVGRIRK----KLDVDIIQTVRGLGY 214 >gi|146291464|ref|YP_001181888.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|145563154|gb|ABP74089.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] Length = 219 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 83/150 (55%), Gaps = 7/150 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131 +P++ ++ + +D +G DD + KP H E+LAR+ + RR ++N + + Sbjct: 73 MPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHFGRADNVLQHAGV 132 Query: 132 RVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + D + V GEV L + E R+L YLM N K V+K+++ IY D+ + NV+ Sbjct: 133 SLDVDKQAVTNVDGEVIELTKIEYRLLHYLMVNPSKIVSKSELSERIYE-EDQIKDSNVI 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++++LR+ +LG D ++++R GY + Sbjct: 192 EVYVNRLRQ----RLGKDYIETRRGQGYRL 217 >gi|168184947|ref|ZP_02619611.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237795402|ref|YP_002862954.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672001|gb|EDT83962.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263740|gb|ACQ54773.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 221 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 19/199 (9%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQ 85 +L A + + A+E F G + ++ LP+I IR S VP+I ++ + Sbjct: 27 YLVEEATDGLMAVEMFREGNFDLIILDVMLPKIDGFVVCEIIRKESSVPIIMLTALGEEE 86 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEV 142 + F+ VDD + KP ++ RV A+ RR L+ +N+ I ++ V Sbjct: 87 DEMRGFELKVDDYITKPFSINLLIKRVEAVLRRANGLEENNSTLTFEEITIYLSNYKTLV 146 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + L +E +ILE L++N G+ ++ + + I+G +D + V+++HI K LR Sbjct: 147 NNKEIELTYKEFQILEILISNVGRVFSRESLLNQIWG-YDYFGDTRVIDTHI----KNLR 201 Query: 203 NKLGFDPVDSKRFLGYSID 221 KL D + + R +GY I+ Sbjct: 202 QKLSIDYIKTIRGVGYKIE 220 >gi|116872456|ref|YP_849237.1| CheY family two-component response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741334|emb|CAK20456.1| two-component response regulator, CheY family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 220 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 78/162 (48%), Gaps = 8/162 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 L +IR+ S P++ ++ L FD G DD + KP + +L RV + RR Sbjct: 63 LTELIRSTSSAPILMMTALSEESDELKGFDLGADDYIQKPFSYLVLLKRVQVLLRRSNQK 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +V + G I V ++ + GE L ++E IL L+ N+ K + + I S ++ Sbjct: 123 EVDKKKLRCGNISVNTETFEVVSAGETIELTKKEFDILVLLIRNQKKVITREMILSQVWD 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F V+ +++ +H+ LRKKL + + + R GY +D Sbjct: 183 -FAAIVDTSIINTHMKNLRKKLHT----EKIRTIRGAGYKMD 219 >gi|331268770|ref|YP_004395262.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329125320|gb|AEB75265.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 229 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 51/148 (34%), Positives = 72/148 (48%), Gaps = 9/148 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IR ++P+I IS + L+ F G DD V KP E+ AR+ A RR Sbjct: 64 ELIKKIRKTKKLPIIVISAKLDKEIKLELFKLGADDYVTKPFDIDELSARIDANLRRYID 123 Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 NN + V D ++ V G+ L RE ILE L+ + K +K +F Sbjct: 124 FNNSSNGEKDIVHKDIILNKEAKEVLVSGQELSLTSREFNILELLLTHPKKVFSKANLFE 183 Query: 176 AIYGLFDEAV-EENVVESHISKLRKKLR 202 +++G DE + +EN V HIS LR KL Sbjct: 184 SVWG--DEYLGDENTVNVHISNLRNKLN 209 >gi|153941052|ref|YP_001391293.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936948|gb|ABS42446.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319325|gb|ADF99702.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 221 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 19/199 (9%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQ 85 +L A + + A+E F G + ++ LP+I IR S VP+I ++ + Sbjct: 27 YLVEVATDGLIAVEMFRRGNFDLIILDVMLPKIDGFVVCEIIRKESSVPIIMLTALGEEE 86 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEV 142 + F+ VDD + KP ++ RV A+ RR L+ +N+ I ++ V Sbjct: 87 DEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANGLEENNSTLTFEEITIYPSNYKTLV 146 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + L +E +ILE L++N G+ ++ + + I+G +D + V+++HI K LR Sbjct: 147 NNKEIELTYKEFQILEILISNAGRVFSRESLLNQIWG-YDYFGDTRVIDTHI----KNLR 201 Query: 203 NKLGFDPVDSKRFLGYSID 221 KL D + + R +GY I+ Sbjct: 202 QKLNIDYIKTIRGVGYKIE 220 >gi|217971454|ref|YP_002356205.1| winged helix family two component transcriptional regulator [Shewanella baltica OS223] gi|217496589|gb|ACK44782.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] Length = 219 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 83/150 (55%), Gaps = 7/150 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131 +P++ ++ + +D +G DD + KP H E+LAR+ + RR ++N + + Sbjct: 73 MPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHFGRADNVLQHAGV 132 Query: 132 RVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + D + V GEV L + E R+L YLM N K V+K+++ IY D+ + NV+ Sbjct: 133 SLDVDKQAVTNVDGEVIELTKIEYRLLHYLMVNPSKIVSKSELSERIYE-EDQIKDSNVI 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++++LR+ +LG D ++++R GY + Sbjct: 192 EVYVNRLRQ----RLGKDYIETRRGQGYRL 217 >gi|126725701|ref|ZP_01741543.1| DNA-binding response regulator [Rhodobacterales bacterium HTCC2150] gi|126704905|gb|EBA03996.1| DNA-binding response regulator [Rhodobacterales bacterium HTCC2150] Length = 222 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 F+L++D A + F DG +++ +SL + D+ ++ L G G Sbjct: 3 FLLVEDNAQLARAVCDRFAIDGHAIDHASSLADAIAFVDTTHYDLILLDIMLPDGDGRDF 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 L R RA ++ P+I ++ + + D G DD V KP E+ AR A+ RR Sbjct: 63 LSRHR--RAKNKTPVIVLTARSQVSDRISLLDLGADDYVTKPFDFAELEARCRAVLRRQG 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V+ NR E + + S + L RE R++E A G+ +K + ++ Sbjct: 121 GVAQNRIEFAGVVLDSLEATLSAKNGTQNLRNREFRLVEIFFAAPGQIFSKNHLMDRLFS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 L D+ V EN +E ++ +LRKKL +++ R LGY + Sbjct: 181 LSDD-VSENAIEVYVGRLRKKLDGTGA--QIETVRSLGYRL 218 >gi|229095219|ref|ZP_04226211.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229101326|ref|ZP_04232070.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|229114167|ref|ZP_04243588.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228669187|gb|EEL24608.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228682031|gb|EEL36164.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228688078|gb|EEL41964.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 228 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 77/150 (51%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 76 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 135 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V+G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 136 GIELFGKDKDVQVEGQDIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 194 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 195 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 223 >gi|227536221|ref|ZP_03966270.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300772180|ref|ZP_07082050.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|227243924|gb|EEI93939.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|300760483|gb|EFK57309.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 225 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 11/206 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D A + D + ++G +++ S E + DV ++ L G ++ Sbjct: 4 LLVEDDARISDFIVKGLEENGFNVQLCVSAEEAREVVFEHSFDVIIMDVML--PGIDGIQ 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L ++IR + P++ +S + + DSG DD + KP H +E+++R+ A+ RR K Sbjct: 62 LTKMIRYKKNLTPILMLSALNEAEDKIAALDSGADDFLVKPFHFKELISRINALTRRTKY 121 Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V +N +++ D GE L +E ++L YL N K V++T + +A Sbjct: 122 QKQEVLSNSLVIQNLKIDRDKYAVYQDGEKIELSPKEFKLLLYLAENTDKVVSRTMVLNA 181 Query: 177 IYGL-FDEAVEENVVESHISKLRKKL 201 ++G+ FD NVV+ +IS LR K+ Sbjct: 182 VWGINFDN--NTNVVDVYISYLRNKI 205 >gi|167758316|ref|ZP_02430443.1| hypothetical protein CLOSCI_00655 [Clostridium scindens ATCC 35704] gi|167664213|gb|EDS08343.1| hypothetical protein CLOSCI_00655 [Clostridium scindens ATCC 35704] Length = 225 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 3/163 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ L R IR P++ ++ ++ G DD + KP E+ ARVAA Sbjct: 62 GQDGFSLCRDIRDQVDCPILFLTAKVQEADIMEGLGIGGDDYITKPFGIGELRARVAAHL 121 Query: 117 RRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + N G ++ + +G+ L + E I EYL N G+ +K +I+ Sbjct: 122 RREGREKKNAVSVGDVQFLLQAKQAVYEGKALELTKSEYAICEYLALNHGQVFSKDRIYE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G +D + + + HI +R K + K GF P+++ +GY Sbjct: 182 HVFG-YDGEGDSSAITEHIKNIRGKCQ-KAGFAPIETVWGIGY 222 >gi|126172493|ref|YP_001048642.1| two component transcriptional regulator [Shewanella baltica OS155] gi|160873368|ref|YP_001552684.1| two component transcriptional regulator [Shewanella baltica OS195] gi|304411806|ref|ZP_07393418.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307306140|ref|ZP_07585885.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|125995698|gb|ABN59773.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS155] gi|160858890|gb|ABX47424.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|304349994|gb|EFM14400.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306911013|gb|EFN41440.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|315265596|gb|ADT92449.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 219 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 83/150 (55%), Gaps = 7/150 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131 +P++ ++ + +D +G DD + KP H E+LAR+ + RR ++N + + Sbjct: 73 MPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHFGRADNVLQHAGV 132 Query: 132 RVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + D + V GEV L + E R+L YLM N K V+K+++ IY D+ + NV+ Sbjct: 133 SLDVDKQAVTNVDGEVIELTKIEYRLLHYLMVNPSKIVSKSELSERIYE-EDQIKDSNVI 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++++LR+ +LG D ++++R GY + Sbjct: 192 EVYVNRLRQ----RLGKDYIETRRGQGYRL 217 >gi|124265269|ref|YP_001019273.1| two component transcriptional regulator [Methylibium petroleiphilum PM1] gi|124258044|gb|ABM93038.1| two component transcriptional regulator, winged helix family [Methylibium petroleiphilum PM1] Length = 223 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA V P++ ++ S++ + D G DD + KP +E+ ARV A+ RR Sbjct: 60 LEVLRKMRARGTVTPVLILTAADSVEQRVKGLDLGADDYMAKPFALQELEARVRALTRRG 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++ + GP+ + GR + ++ L RE +LE L+ G+ V+K Q+ + Sbjct: 120 LGTASAIIKHGPLSFDATGRVAYLNDQMIELSARELSLLEVLLQRAGRLVSKDQLVERLC 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE V N +E +I +LRKK+ G + + R LGY ++ Sbjct: 180 EWGDE-VSNNAIEVYIHRLRKKIEQ--GPVRIATVRGLGYCLE 219 >gi|229065319|ref|ZP_04200598.1| Two-component response regulator vanRB [Bacillus cereus AH603] gi|228715969|gb|EEL67706.1| Two-component response regulator vanRB [Bacillus cereus AH603] Length = 221 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 7/162 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ ++IR+ S VP+I ++ Q + FD G+DD + KP ++ RV A+ RR Sbjct: 64 EVAKMIRSQSNVPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSND 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K +N +RV D V L +E IL+ L+ N K + + I ++G Sbjct: 124 KSLDNHFVFKELRVDVDAYKVYVNEVEISLTTKEFEILQLLLQNERKVLLRESIVEKVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D E ++++HI +RK KL + + + +GY ID Sbjct: 184 -YDYIGESRIIDTHIKNIRK----KLDIPYIKTIKGIGYKID 220 >gi|163816600|ref|ZP_02207964.1| hypothetical protein COPEUT_02791 [Coprococcus eutactus ATCC 27759] gi|158448300|gb|EDP25295.1| hypothetical protein COPEUT_02791 [Coprococcus eutactus ATCC 27759] Length = 232 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 87/160 (54%), Gaps = 5/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + IR S VP+I ++ S + G DD + KP + +L R+AA+ +R++ S Sbjct: 75 LVKEIRKESDVPIIMVTSRTSEMDEVLSMSYGADDYITKPYNPTILLLRIAAVLKRMEGS 134 Query: 123 NNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N A V FS G + E+ L + E I + L+ANR K V++ +I + ++ Sbjct: 135 QNTASYRDAEVNFSKGTISKGDQEMV-LTKNEMIIFQLLLANREKIVSRDEIMTDLWD-N 192 Query: 182 DEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 DE V +N + +IS+LR KL + LG+ D +++++ GY + Sbjct: 193 DEFVNDNALTVNISRLRGKLAD-LGYDDAIETRKKQGYRL 231 >gi|71906819|ref|YP_284406.1| two component transcriptional regulator [Dechloromonas aromatica RCB] gi|71846440|gb|AAZ45936.1| two component transcriptional regulator, winged helix family [Dechloromonas aromatica RCB] Length = 221 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 106/222 (47%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ + G +++ + E E D++ I+ L G L Sbjct: 3 ILLVEDDTMLAESICEGLEKGGFTVDRLGAAEPAESALGLTHYDLAIIDIGL--PGMSGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 EL R +R QVP++ ++ L + D G DD + KP E+LAR+ A+ RR L Sbjct: 61 ELIRRVRLRGLQVPVLILTARDGLDDRISGLDLGADDYMVKPFQLPELLARMRALIRRSL 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ G IR+ R GE+ L RE IL+ LM V K ++ ++ Sbjct: 121 SAASSELAAGGIRLDLARRVATAHGEIMDLTGREWEILQQLMLASPNVVGKQKMAESLSE 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + N VE +IS+LR+KL+ G + + + R +GY +D Sbjct: 181 -WENEISANAVEIYISRLRQKLQG-CGIE-IRTIRGIGYRLD 219 >gi|260430574|ref|ZP_05784547.1| transcriptional activator protein CopR [Citreicella sp. SE45] gi|260418603|gb|EEX11860.1| transcriptional activator protein CopR [Citreicella sp. SE45] Length = 225 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 22/230 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLE----GFNSLEFEEWLQSSAREDVSAIEAFLIG-K 56 +L +D A + D +A ++G S+E G ++L + + D++ ++ L G Sbjct: 3 ILLAEDDAKIADYIVAGLSENGHSVEHVSDGRDALSYCLYNDC----DLAILDRMLPGMD 58 Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL+ R + +P++ ++ + ++ +G DD + KP H E++AR+ AI Sbjct: 59 GLSVLKALRA--SQKTLPVLFLTALGQVDDRVEGLAAGGDDYLTKPFHFSELVARIDAIV 116 Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR + + P+ D R QG V L +E ILE LM N G+ V + Sbjct: 117 RR----KSEKKVEPVLTVHDLTLDLLSRTATRQGNVIELHAKEFSILEILMRNAGRVVTR 172 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 T + ++ F+ VVE+H+S+LR K+ + + R GYS+ Sbjct: 173 TLLLERVWN-FNFEPNTTVVETHMSRLRAKVDRPFDTPLIHTIRNTGYSM 221 >gi|91790516|ref|YP_551468.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91699741|gb|ABE46570.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 223 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ + +RA S +P++ ++ S++ + D G DD + KP +E+ ARV A+ RR Sbjct: 61 LEVLKRLRARGSALPVLILTAADSVEERVKGLDYGADDYMAKPFSLQELEARVRALIRRG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + +++ + GP+ GR + G++ L RE +LE L+ G+ V+K Q+ + Sbjct: 121 MGGASSTIKHGPLVYDQAGRVATIDGQMLELSARELGLLEVLLQRAGRLVSKDQLVERLC 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E +I +LRKK+ G + + R LGY ++ Sbjct: 181 E-WGEEVSNNAIEVYIHRLRKKIEK--GPIRIATVRGLGYCLE 220 >gi|228951062|ref|ZP_04113180.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068257|ref|ZP_04201560.1| Two-component response regulator [Bacillus cereus F65185] gi|229077882|ref|ZP_04210493.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|229143295|ref|ZP_04271726.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|229148910|ref|ZP_04277155.1| Two-component response regulator [Bacillus cereus m1550] gi|229177100|ref|ZP_04304489.1| Two-component response regulator [Bacillus cereus 172560W] gi|229188777|ref|ZP_04315812.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228594678|gb|EEK52462.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228606281|gb|EEK63713.1| Two-component response regulator [Bacillus cereus 172560W] gi|228634450|gb|EEK91034.1| Two-component response regulator [Bacillus cereus m1550] gi|228640102|gb|EEK96501.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228705400|gb|EEL57775.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228714718|gb|EEL66590.1| Two-component response regulator [Bacillus cereus F65185] gi|228808579|gb|EEM55080.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 228 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 76 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 135 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 136 GIELFGKDKDVQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 194 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 195 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 223 >gi|227524667|ref|ZP_03954716.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227088151|gb|EEI23463.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 228 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 101/203 (49%), Gaps = 13/203 (6%) Query: 27 EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+++ L LQ++ E+ I L+ +E+ R +R P+I ++ S Sbjct: 24 EGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNGMEVARRLREKKNTPIIMMTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP-------IRVFSD 136 + + FD G DD + KP E+LAR+ A+ RR+++ N++ ++ + + + Sbjct: 84 VIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQIENDQQKSSKKSVTFKDLTIEKE 143 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 R EV L +RE +L LM N +A+ + + ++G +D VE NVV+ +I Sbjct: 144 SRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLLTKVWG-YDSEVETNVVDVYIRY 202 Query: 197 LRKKLRNKLGFDP-VDSKRFLGY 218 LR K+ N+ G + + + R GY Sbjct: 203 LRNKI-NRPGENSYIQTVRGTGY 224 >gi|260776888|ref|ZP_05885782.1| two component response regulator [Vibrio coralliilyticus ATCC BAA-450] gi|260606554|gb|EEX32828.1| two component response regulator [Vibrio coralliilyticus ATCC BAA-450] Length = 223 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 8/163 (4%) Query: 65 RIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R++R SQV P++ ++ S+ + ++G DD + KP E+ ARV A+ RR VS Sbjct: 64 RVLR-QSQVHSPILILTAKDSIGDRVAGLEAGADDYMVKPFAFEELNARVKALARRQPVS 122 Query: 123 NNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GP+ + R G L RE +ILE LM N+G+ V +T + ++G Sbjct: 123 QASTQLTAGPLTLDKLSRKVTHSGTEVDLLPREYQILELLMVNQGELVTRTMLLEQVWGF 182 Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 FD ++V++H+S+LR K+ + + + R GY + + Sbjct: 183 QFDP--NTSLVQTHVSRLRNKVDKAFNTELIKTVRGAGYVLSF 223 >gi|239832477|ref|ZP_04680806.1| response regulator CTRA [Ochrobactrum intermedium LMG 3301] gi|239824744|gb|EEQ96312.1| response regulator CTRA [Ochrobactrum intermedium LMG 3301] Length = 232 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 3/142 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G+ L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 DE E +++ I KLRKKL Sbjct: 181 GMDEP-ELKIIDVFICKLRKKL 201 >gi|229817830|ref|ZP_04448112.1| hypothetical protein BIFANG_03114 [Bifidobacterium angulatum DSM 20098] gi|229784811|gb|EEP20925.1| hypothetical protein BIFANG_03114 [Bifidobacterium angulatum DSM 20098] Length = 220 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 15/212 (7%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L +DG+ + D ++ G + F+ L ++ G EL R I Sbjct: 19 RVLGRDGHEVVRAADPTAVPGMDLSRFDLVLCD------------VMMPGLDGFELVRQI 66 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R P++ ++ + + + + G DD V KP E+ A+VAA RR + ++ A Sbjct: 67 RPDFDGPIVFLTARVAEEDAVAGYGLGADDYVRKPFGAAELRAKVAAHLRRERRPHSHAL 126 Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + G +R+ R V GE PL E I EYL + G+ +++ QI A+ G ++ V+ Sbjct: 127 SFGEVRIDLGARGLAVGGEAVPLTPTEYAICEYLARHPGQVMSRAQIREAVLG-WESDVD 185 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + +S+ R+KL ++ G DP+ + +GY Sbjct: 186 DAAISMQVSRARRKL-SEAGADPIATVWGMGY 216 >gi|17986706|ref|NP_539340.1| response regulator CTRA [Brucella melitensis bv. 1 str. 16M] gi|23502462|ref|NP_698589.1| cell cycle transcriptional regulator CtrA [Brucella suis 1330] gi|62290479|ref|YP_222272.1| cell cycle transcriptional regulator CtrA [Brucella abortus bv. 1 str. 9-941] gi|82700402|ref|YP_414976.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|148559147|ref|YP_001259466.1| cell cycle transcriptional regulator CtrA [Brucella ovis ATCC 25840] gi|161619539|ref|YP_001593426.1| hypothetical protein BCAN_A1634 [Brucella canis ATCC 23365] gi|163843848|ref|YP_001628252.1| hypothetical protein BSUIS_A1654 [Brucella suis ATCC 23445] gi|189024706|ref|YP_001935474.1| transcriptional regulator [Brucella abortus S19] gi|225628033|ref|ZP_03786069.1| response regulator CTRA [Brucella ceti str. Cudo] gi|225853072|ref|YP_002733305.1| hypothetical protein BMEA_A1651 [Brucella melitensis ATCC 23457] gi|237815987|ref|ZP_04594984.1| response regulator CTRA [Brucella abortus str. 2308 A] gi|254689779|ref|ZP_05153033.1| hypothetical protein Babob68_06309 [Brucella abortus bv. 6 str. 870] gi|254694268|ref|ZP_05156096.1| hypothetical protein Babob3T_06319 [Brucella abortus bv. 3 str. Tulya] gi|254697923|ref|ZP_05159751.1| hypothetical protein Babob28_09480 [Brucella abortus bv. 2 str. 86/8/59] gi|254702316|ref|ZP_05164144.1| hypothetical protein Bsuib55_15851 [Brucella suis bv. 5 str. 513] gi|254704844|ref|ZP_05166672.1| hypothetical protein Bsuib36_13179 [Brucella suis bv. 3 str. 686] gi|254708258|ref|ZP_05170086.1| hypothetical protein BpinM_15199 [Brucella pinnipedialis M163/99/10] gi|254710630|ref|ZP_05172441.1| hypothetical protein BpinB_10241 [Brucella pinnipedialis B2/94] gi|254714814|ref|ZP_05176625.1| hypothetical protein BcetM6_16039 [Brucella ceti M644/93/1] gi|254717874|ref|ZP_05179685.1| hypothetical protein BcetM_16006 [Brucella ceti M13/05/1] gi|254719624|ref|ZP_05181435.1| hypothetical protein Bru83_08785 [Brucella sp. 83/13] gi|254730813|ref|ZP_05189391.1| hypothetical protein Babob42_06339 [Brucella abortus bv. 4 str. 292] gi|256032123|ref|ZP_05445737.1| hypothetical protein BpinM2_16008 [Brucella pinnipedialis M292/94/1] gi|256045215|ref|ZP_05448113.1| hypothetical protein Bmelb1R_12041 [Brucella melitensis bv. 1 str. Rev.1] gi|256061645|ref|ZP_05451784.1| hypothetical protein Bneo5_14960 [Brucella neotomae 5K33] gi|256114167|ref|ZP_05454921.1| hypothetical protein Bmelb3E_15257 [Brucella melitensis bv. 3 str. Ether] gi|256160319|ref|ZP_05458013.1| hypothetical protein BcetM4_15036 [Brucella ceti M490/95/1] gi|256255524|ref|ZP_05461060.1| hypothetical protein BcetB_14813 [Brucella ceti B1/94] gi|256258031|ref|ZP_05463567.1| hypothetical protein Babob9C_11923 [Brucella abortus bv. 9 str. C68] gi|256263445|ref|ZP_05465977.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|256370012|ref|YP_003107523.1| cell cycle transcriptional regulator CtrA [Brucella microti CCM 4915] gi|260169258|ref|ZP_05756069.1| cell cycle transcriptional regulator CtrA [Brucella sp. F5/99] gi|260547010|ref|ZP_05822749.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260565187|ref|ZP_05835671.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260565914|ref|ZP_05836384.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260755311|ref|ZP_05867659.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260758532|ref|ZP_05870880.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260762356|ref|ZP_05874699.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884328|ref|ZP_05895942.1| response regulator CtrA [Brucella abortus bv. 9 str. C68] gi|261214576|ref|ZP_05928857.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261219720|ref|ZP_05934001.1| response regulator CtrA [Brucella ceti M13/05/1] gi|261222734|ref|ZP_05937015.1| response regulator CtrA [Brucella ceti B1/94] gi|261315759|ref|ZP_05954956.1| response regulator CtrA [Brucella pinnipedialis M163/99/10] gi|261318202|ref|ZP_05957399.1| response regulator CtrA [Brucella pinnipedialis B2/94] gi|261322609|ref|ZP_05961806.1| response regulator CtrA [Brucella ceti M644/93/1] gi|261325655|ref|ZP_05964852.1| response regulator CtrA [Brucella neotomae 5K33] gi|261752882|ref|ZP_05996591.1| response regulator CtrA [Brucella suis bv. 5 str. 513] gi|261755541|ref|ZP_05999250.1| response regulator CtrA [Brucella suis bv. 3 str. 686] gi|261758771|ref|ZP_06002480.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|265984635|ref|ZP_06097370.1| response regulator CtrA [Brucella sp. 83/13] gi|265989235|ref|ZP_06101792.1| response regulator CtrA [Brucella pinnipedialis M292/94/1] gi|265991648|ref|ZP_06104205.1| response regulator CtrA [Brucella melitensis bv. 1 str. Rev.1] gi|265995486|ref|ZP_06108043.1| response regulator CtrA [Brucella melitensis bv. 3 str. Ether] gi|265998696|ref|ZP_06111253.1| response regulator CtrA [Brucella ceti M490/95/1] gi|294852911|ref|ZP_06793584.1| cell cycle response regulator ctrA [Brucella sp. NVSL 07-0026] gi|297248862|ref|ZP_06932580.1| cell cycle response regulator ctrA [Brucella abortus bv. 5 str. B3196] gi|306837741|ref|ZP_07470609.1| response regulator CTRA [Brucella sp. NF 2653] gi|306843047|ref|ZP_07475672.1| response regulator CTRA [Brucella sp. BO2] gi|306844599|ref|ZP_07477186.1| response regulator CTRA [Brucella sp. BO1] gi|81325649|sp|Q9ZHS1|CTRA_BRUAB RecName: Full=Cell cycle response regulator CtrA gi|81752222|sp|Q8FZ93|CTRA_BRUSU RecName: Full=Cell cycle response regulator CtrA gi|81832695|sp|Q7CNV1|CTRA_BRUME RecName: Full=Cell cycle response regulator CtrA gi|123547126|sp|Q2YQA4|CTRA_BRUA2 RecName: Full=Cell cycle response regulator CtrA gi|223635099|sp|B2S753|CTRA_BRUA1 RecName: Full=Cell cycle response regulator CtrA gi|223635100|sp|A9M708|CTRA_BRUC2 RecName: Full=Cell cycle response regulator CtrA gi|223635101|sp|A5VRW9|CTRA_BRUO2 RecName: Full=Cell cycle response regulator CtrA gi|223635102|sp|B0CI76|CTRA_BRUSI RecName: Full=Cell cycle response regulator CtrA gi|19223933|gb|AAL86376.1|AF411570_1 response regulator CtrA [Brucella abortus] gi|2952543|gb|AAC69920.1| response regulator CtrA [Brucella abortus] gi|17982329|gb|AAL51604.1| response regulator ctra [Brucella melitensis bv. 1 str. 16M] gi|23348453|gb|AAN30504.1| cell cycle transcriptional regulator CtrA [Brucella suis 1330] gi|62196611|gb|AAX74911.1| CtrA, cell cycle transcriptional regulator CtrA [Brucella abortus bv. 1 str. 9-941] gi|82616503|emb|CAJ11570.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Brucella melitensis biovar Abortus 2308] gi|148370404|gb|ABQ60383.1| cell cycle transcriptional regulator CtrA [Brucella ovis ATCC 25840] gi|161336350|gb|ABX62655.1| Hypothetical protein BCAN_A1634 [Brucella canis ATCC 23365] gi|163674571|gb|ABY38682.1| Hypothetical protein BSUIS_A1654 [Brucella suis ATCC 23445] gi|189020278|gb|ACD73000.1| Transcriptional regulatory protein [Brucella abortus S19] gi|225617196|gb|EEH14242.1| response regulator CTRA [Brucella ceti str. Cudo] gi|225641437|gb|ACO01351.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|237789285|gb|EEP63496.1| response regulator CTRA [Brucella abortus str. 2308 A] gi|256000175|gb|ACU48574.1| cell cycle transcriptional regulator CtrA [Brucella microti CCM 4915] gi|260096060|gb|EEW79937.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260151255|gb|EEW86349.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260155432|gb|EEW90512.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260668850|gb|EEX55790.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260672788|gb|EEX59609.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675419|gb|EEX62240.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260873856|gb|EEX80925.1| response regulator CtrA [Brucella abortus bv. 9 str. C68] gi|260916183|gb|EEX83044.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260921318|gb|EEX87971.1| response regulator CtrA [Brucella ceti B1/94] gi|260924809|gb|EEX91377.1| response regulator CtrA [Brucella ceti M13/05/1] gi|261295299|gb|EEX98795.1| response regulator CtrA [Brucella ceti M644/93/1] gi|261297425|gb|EEY00922.1| response regulator CtrA [Brucella pinnipedialis B2/94] gi|261301635|gb|EEY05132.1| response regulator CtrA [Brucella neotomae 5K33] gi|261304785|gb|EEY08282.1| response regulator CtrA [Brucella pinnipedialis M163/99/10] gi|261738755|gb|EEY26751.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|261742635|gb|EEY30561.1| response regulator CtrA [Brucella suis bv. 5 str. 513] gi|261745294|gb|EEY33220.1| response regulator CtrA [Brucella suis bv. 3 str. 686] gi|262553320|gb|EEZ09154.1| response regulator CtrA [Brucella ceti M490/95/1] gi|262766599|gb|EEZ12388.1| response regulator CtrA [Brucella melitensis bv. 3 str. Ether] gi|263002432|gb|EEZ15007.1| response regulator CtrA [Brucella melitensis bv. 1 str. Rev.1] gi|263093453|gb|EEZ17503.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|264661432|gb|EEZ31693.1| response regulator CtrA [Brucella pinnipedialis M292/94/1] gi|264663227|gb|EEZ33488.1| response regulator CtrA [Brucella sp. 83/13] gi|294821500|gb|EFG38499.1| cell cycle response regulator ctrA [Brucella sp. NVSL 07-0026] gi|297176031|gb|EFH35378.1| cell cycle response regulator ctrA [Brucella abortus bv. 5 str. B3196] gi|306275043|gb|EFM56806.1| response regulator CTRA [Brucella sp. BO1] gi|306286777|gb|EFM58323.1| response regulator CTRA [Brucella sp. BO2] gi|306407197|gb|EFM63408.1| response regulator CTRA [Brucella sp. NF 2653] gi|326409615|gb|ADZ66680.1| Transcriptional regulatory protein [Brucella melitensis M28] gi|326539318|gb|ADZ87533.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 232 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 3/142 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G+ L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 DE E +++ I KLRKKL Sbjct: 181 GMDEP-ELKIIDVFICKLRKKL 201 >gi|319790209|ref|YP_004151842.1| two component transcriptional regulator, winged helix family [Thermovibrio ammonificans HB-1] gi|317114711|gb|ADU97201.1| two component transcriptional regulator, winged helix family [Thermovibrio ammonificans HB-1] Length = 212 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 11/147 (7%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133 P++ ++ + + DSG DD + KP +E+LAR+ A+ RR + R G R Sbjct: 76 PILMLTALSEEEEKVKGLDSGADDYLTKPFGIKELLARIRALLRRSERGFTRE--GEFRF 133 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 +G V+G L R+E+ IL+ L+ NRGK V+K +I + ++ E V + VV+ H Sbjct: 134 TDEG--VVVEGREVKLTRKEKEILKVLVENRGKAVSKEEIVAKVWK--GEQVNKRVVDVH 189 Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + K LR+KLG D + + +GY + Sbjct: 190 V----KHLRDKLG-DRIKTVWGVGYKV 211 >gi|297588589|ref|ZP_06947232.1| response regulator [Finegoldia magna ATCC 53516] gi|297573962|gb|EFH92683.1| response regulator [Finegoldia magna ATCC 53516] Length = 229 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 66/233 (28%), Positives = 112/233 (48%), Gaps = 21/233 (9%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KG 57 + V+ D++ +VK I L D+ L+ +N + E ++ + I+ FL+ +G Sbjct: 4 IMVVDDEKDIVKAIEIYLKTDNYNVLKAYNGYDALELMEKNK------IDLFLVDIMMEG 57 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LEL + IR S P+I +S L + + G DD + KP E+LAR+ + R Sbjct: 58 MDGLELTQKIREVSNAPIIILSAKSELNDKVMGLNLGADDYITKPFDAVELLARIKSCLR 117 Query: 118 RLKVSNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 RL++S + + G VFS GR + + GE L E I+ L+ N+G Sbjct: 118 RLELSKDNSLNG--NVFSAGRLTINDDKKEVLIDGEEIKLTPYEYGIILLLLKNKGIVFT 175 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +I+ ++ V++ +V HIS+LR+K+ N D + S +GY I+ Sbjct: 176 SEEIYENVWEAPPYDVKK-IVSVHISRLREKVEINPRRPDLIKSVYGMGYKIE 227 >gi|254519596|ref|ZP_05131652.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] gi|226913345|gb|EEH98546.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] Length = 226 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 85/160 (53%), Gaps = 7/160 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S +P+I ++ S L + G DD + KP + + +LAR+++I RR + Sbjct: 65 ICREIRKRSSIPIIVVTSRDSEVDELMSMNLGADDFITKPYNTQILLARISSIIRR-AYN 123 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N+ +E G I S + E + L + E RIL L+ N+ K V++ +I +++ Sbjct: 124 NSDSEVLEYRGLIHNLSTS-EAEFDNKRIELSKNESRILYVLIKNKEKIVSRNEIIESLW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE V++N + +I++LRKKL D + +KR GY Sbjct: 183 Q-SDEFVDDNTLTVNINRLRKKLEEIGAIDYLKTKRGQGY 221 >gi|29830515|ref|NP_825149.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|290959412|ref|YP_003490594.1| phosphate two component system response regulator [Streptomyces scabiei 87.22] gi|29607627|dbj|BAC71684.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] gi|260648938|emb|CBG72052.1| phosphate two component system response regulator [Streptomyces scabiei 87.22] Length = 223 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 59 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 179 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 206 >gi|85704878|ref|ZP_01035979.1| two-component response regulator [Roseovarius sp. 217] gi|85670696|gb|EAQ25556.1| two-component response regulator [Roseovarius sp. 217] Length = 223 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 6/165 (3%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L + +R A + P++ ++ S+ + ++G DD + KP E+ ARVAA+ RR Sbjct: 60 LTLVKTLRGAGNHTPVLFLTSLGSVDERVSGLNAGADDYLVKPFAFGELSARVAALARRP 119 Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + GP+ + R + L RE ILE+LM +G+ +T + AI Sbjct: 120 HALDQETMLRAGPLEMDLIARKVTRERHEIDLLPREFAILEHLMRRKGRVQTRTMLLEAI 179 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + FD NVVE+HIS+LR K+ D + + R GY ID Sbjct: 180 WDISFDPMT--NVVETHISRLRAKVDRPFATDLIKTVRGAGYRID 222 >gi|47567150|ref|ZP_00237866.1| DNA-binding response regulator CiaR [Bacillus cereus G9241] gi|47556206|gb|EAL14541.1| DNA-binding response regulator CiaR [Bacillus cereus G9241] Length = 223 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 71 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 131 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 189 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218 >gi|238749640|ref|ZP_04611145.1| Two-component response regulator of virulence determinant [Yersinia rohdei ATCC 43380] gi|238712295|gb|EEQ04508.1| Two-component response regulator of virulence determinant [Yersinia rohdei ATCC 43380] Length = 223 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 109/223 (48%), Gaps = 5/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ + G ++ + ++ D++ I+ L GE L Sbjct: 4 LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 L R R+H + +P++ ++ S Q + ++G DD V KP H E++AR+ A+ RR + Sbjct: 62 LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMRRNIG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ + P ++ R+ V + L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVIDFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E E + ++ + +LRKKL+ + + + + R GY D N Sbjct: 181 DAELRESHTIDVLMGRLRKKLQAEHEGEVITTIRGQGYRFDTN 223 >gi|297200596|ref|ZP_06917993.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297147681|gb|EDY53756.2| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 226 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209 >gi|319898471|ref|YP_004158564.1| cell cycle transcriptional regulator CtrA [Bartonella clarridgeiae 73] gi|319402435|emb|CBI75976.1| cell cycle transcriptional regulator CtrA [Bartonella clarridgeiae 73] Length = 233 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 21/191 (10%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74 YI G++G+ L +++ L D+S + + L L +I + P Sbjct: 28 YITDLGEEGIDLGKL--YDYDIILLDLNLPDISGYDVL------RTLRLEKI-----KTP 74 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGP 130 ++ +S ++ + F G DD + KP H E++AR+ A+ RR S A+ TG Sbjct: 75 VLILSGMGGIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRR---SKGHAQSVIITGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V D + EV G L +E ++LE L +G + K + +YG DE E ++ Sbjct: 132 LTVNLDAKTVEVAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190 Query: 191 ESHISKLRKKL 201 + I KLRKKL Sbjct: 191 DVFICKLRKKL 201 >gi|240850928|ref|YP_002972328.1| cell cycle transcriptional regulator CtrA [Bartonella grahamii as4aup] gi|240268051|gb|ACS51639.1| cell cycle transcriptional regulator CtrA [Bartonella grahamii as4aup] Length = 233 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL R+ A + P++ +S +++ + F G DD + KP H E++AR+ A+ Sbjct: 59 GYDVLRTLRL--AKIKTPVLILSGMNAIEDKVRGFGFGADDYMTKPFHKDELIARIHAVV 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + TG + V D + EV G L +E ++LE L +G + K + Sbjct: 117 RRSKGHAQSVIVTGDLTVNLDAKTVEVAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +YG DE E +++ I KLRKKL Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201 >gi|229588980|ref|YP_002871099.1| two component system, response regulator [Pseudomonas fluorescens SBW25] gi|229360846|emb|CAY47704.1| two component system, response regulator [Pseudomonas fluorescens SBW25] Length = 223 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + Sbjct: 63 LARLRARGKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLG 122 Query: 123 NNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + V+ D R V GE+ L RE+ +LE L+A G+ ++K Q+ S ++GL Sbjct: 123 GERQQACGVLVYDLDTRRFTVGGELMTLTSREQAVLEALIARPGRVMSKEQLASQVFGL- 181 Query: 182 DEAVEENVVESHISKLRKKL 201 DE + +E ++ +LRKKL Sbjct: 182 DEEASPDAIEIYVHRLRKKL 201 >gi|237794328|ref|YP_002861880.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|229261381|gb|ACQ52414.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 228 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 99/197 (50%), Gaps = 18/197 (9%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+GY G+ +E F S++ + + D+S GE E+ RIIR Sbjct: 21 LEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLMLPDIS---------GE---EVCRIIR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126 S V + ++ +L ++ + G D+ + KP RE+ ARV A++RRL N+ + Sbjct: 69 QSSDVHIFMLTAKGTLNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTYNSTSNL 128 Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + G + + D R +V G+ + E IL L++N+GK +++ Q+ + I+G+ E Sbjct: 129 IFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIFGIDFEG 188 Query: 185 VEENVVESHISKLRKKL 201 + ++ HI +RKK+ Sbjct: 189 YDR-TIDVHIKNIRKKI 204 >gi|225388781|ref|ZP_03758505.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme DSM 15981] gi|225045163|gb|EEG55409.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme DSM 15981] Length = 225 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 75/144 (52%), Gaps = 2/144 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ + IR +SQVP+I ++ + L F GVD+ ++KP + ++ARV AI RR Sbjct: 65 EVLKTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRRSNM 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 VS + G I + + G L +E +L Y + N+G +++ +I + ++ Sbjct: 125 VSTDTLNVGGICIDKAAHQVTIDGSEIELSYKEFELLTYFVENQGLALSREKILNNVWN- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR K+ K Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGEK 207 >gi|242280512|ref|YP_002992641.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242123406|gb|ACS81102.1| two component transcriptional regulator, winged helix family [Desulfovibrio salexigens DSM 2638] Length = 232 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 80/148 (54%), Gaps = 7/148 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ LE+ R +R HS VP+I ++ + + G DD ++KP + RE+LAR+ A+ Sbjct: 60 GKDGLEVLRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVL 119 Query: 117 RRLK-VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR K NN +G I V + E++G+ L E ++L+ LM N G+ + + Sbjct: 120 RRAKGPENNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTR 179 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLR 198 + ++++G A + + ++ HISKLR Sbjct: 180 DDLMTSVWGKDFNAFDRS-IDVHISKLR 206 >gi|163816027|ref|ZP_02207397.1| hypothetical protein COPEUT_02207 [Coprococcus eutactus ATCC 27759] gi|158448837|gb|EDP25832.1| hypothetical protein COPEUT_02207 [Coprococcus eutactus ATCC 27759] Length = 222 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 3/164 (1%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ + IRA++Q VP++ ++ Q + D+G D + KP E LAR+ + R Sbjct: 60 MEVLKTIRANNQQVPVLFLTAKGETQDIVRGLDAGASDYMTKPFEFPEFLARLRVMLRTQ 119 Query: 120 KVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V N N G + V + G L RE ILEYL NR V + QI + I+ Sbjct: 120 GVVNENVIACGSLVVDMNNHKAVRDGRNIDLTVREYAILEYLARNRNIVVTREQIRANIW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + D+ V NVV+ +I LR+K+ +K + + R +GY ++ Sbjct: 180 NI-DDDVNSNVVDVYIRYLRRKIDDKYDDKLIQTIRGVGYKLEC 222 >gi|212636326|ref|YP_002312851.1| DNA-binding response regulator [Shewanella piezotolerans WP3] gi|212557810|gb|ACJ30264.1| DNA-binding response regulator [Shewanella piezotolerans WP3] Length = 233 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 82/155 (52%), Gaps = 12/155 (7%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----E 127 + P++ ++ S Q ++ D+G DD + KP H E++AR+ A+ RR S +A Sbjct: 72 EFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR---SAGKASPVIN 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 GP + + + GE+ L E ++LEY M + G+ +KT + IY D ++ Sbjct: 129 NGPFSLNTSSLELTKNGELISLSGSEYKLLEYFMLHIGEVKSKTVLTEHIYDQ-DFDLDS 187 Query: 188 NVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220 NV+E I +LRKKL N+LG +++ R GY + Sbjct: 188 NVIEVFIRRLRKKLDADNQLGL--IETLRGQGYRL 220 >gi|90419036|ref|ZP_01226947.1| two component repsonse/transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90337116|gb|EAS50821.1| two component repsonse/transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 231 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 3/142 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G+ L +E +LE L +G + K + +YG Sbjct: 121 GHAQSVINTGDLTVNLDAKTVEVNGQRVHLTGKEYAMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 DE E +++ I KLRKKL Sbjct: 181 GMDEP-ELKIIDVFICKLRKKL 201 >gi|229018018|ref|ZP_04174894.1| Two-component response regulator vanRB [Bacillus cereus AH1273] gi|229026943|ref|ZP_04183264.1| Two-component response regulator vanRB [Bacillus cereus AH1272] gi|228734357|gb|EEL85030.1| Two-component response regulator vanRB [Bacillus cereus AH1272] gi|228743287|gb|EEL93411.1| Two-component response regulator vanRB [Bacillus cereus AH1273] Length = 214 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 7/163 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 E+ ++IR+ S VP+I ++ + + FD G+DD + KP ++ RV A+ RR Sbjct: 56 FEVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSY 115 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K NN +R+ D V L +E IL+ L N K + + I ++ Sbjct: 116 DKNVNNYLVFKEVRIDVDAYRVYVNDIEILLTTKEFEILQLLFQNERKVLTRENIVEKVW 175 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +D E ++++HI LRK KL + + + +GY ID Sbjct: 176 G-YDYFGETRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 213 >gi|307728697|ref|YP_003905921.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307583232|gb|ADN56630.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 224 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 93/190 (48%), Gaps = 22/190 (11%) Query: 39 QSSAREDVSAIEAFLIG--KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 ++ R DV A +G + + + L I RA +P++ ++ ++ + D G D Sbjct: 37 EAELRSDVYAAAVLDLGLPRKDGIEVLSSIRRAGITLPVLVLTARDTVPDRVRGLDIGAD 96 Query: 97 DVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFP 148 D V KP+ +E+ AR+ A+ RR L+V N E V+ + E Sbjct: 97 DYVVKPVDLQELAARLRALVRRAHGVSQETLRVQNVALEPATRSVYRN-------EEPVT 149 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L RE +L+ LM N G+ +++ Q+ AIYG + + +E N VE HI +LR KLG D Sbjct: 150 LSSREFDLLQTLMLNAGRVLSREQLEQAIYG-WGQEIESNAVEVHI----HRLRTKLGSD 204 Query: 209 PVDSKRFLGY 218 + + R +GY Sbjct: 205 LIKTVRGVGY 214 >gi|262038592|ref|ZP_06011961.1| response regulator MprA [Leptotrichia goodfellowii F0264] gi|261747461|gb|EEY34931.1| response regulator MprA [Leptotrichia goodfellowii F0264] Length = 224 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 79/147 (53%), Gaps = 10/147 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR SQVP+I ++ + + FD G DD + KP + E+LAR+ A+ RR K Sbjct: 62 MEVCKRIREGSQVPIIMLTAKDEISDKIVGFDYGADDYMTKPFSNEELLARIKALLRRTK 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIF 174 + + I F D + EVF L +RE +L++L+ N+G +++ +I Sbjct: 122 KT---VDHKGIFEFEDLKINYSTYEVFRGETLISLSKREFELLDFLVLNKGIVLSRDKIL 178 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++G FD +N+++ +I LR K+ Sbjct: 179 EEVWG-FDYIGNDNILDLYIKYLRDKV 204 >gi|182677341|ref|YP_001831487.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633224|gb|ACB93998.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 233 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 3/144 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R A + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRTLRVAKVKTPILILSGLAGIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + E+ G L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVIMTGDLIVNLDQKTVEICGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRN 203 DE E +++ I KLRKKL N Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLAN 203 >gi|123442021|ref|YP_001006004.1| DNA-binding transcriptional regulator PhoP [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332162074|ref|YP_004298651.1| DNA-binding transcriptional regulator PhoP [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122088982|emb|CAL11793.1| response regulator protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318606122|emb|CBY27620.1| transcriptional regulatory protein PhoP [Yersinia enterocolitica subsp. palearctica Y11] gi|325666304|gb|ADZ42948.1| DNA-binding transcriptional regulator PhoP [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860072|emb|CBX70398.1| transcriptional regulatory protein phoP [Yersinia enterocolitica W22703] Length = 223 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 108/223 (48%), Gaps = 5/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ + G ++ + ++ D++ I+ L GE L Sbjct: 4 LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 L R R+H + +P++ ++ S Q + ++G DD V KP H E++AR+ A+ RR + Sbjct: 62 LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMRRNIG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ E P ++ R+ V + L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQIIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E E + ++ + +LRKKL + + + + R GY D N Sbjct: 181 DAELRESHTIDVLMGRLRKKLLAEHEGEVITTIRGQGYRFDAN 223 >gi|91680588|emb|CAJ45044.1| PhoP protein [Streptomyces natalensis] Length = 223 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 59 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 119 PEEVAPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 179 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 206 >gi|119470711|ref|ZP_01613379.1| response regulator [Alteromonadales bacterium TW-7] gi|119446181|gb|EAW27459.1| response regulator [Alteromonadales bacterium TW-7] Length = 219 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 109/222 (49%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D LV G +G S+E +++ S ++ ++ L G G ++ Sbjct: 3 LLLVEDDHLVAQGLCRSLRQEGYSVEHSATVKHALQCLGSGEIELVILDLGLPDGDGSQI 62 Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L + I+A +V P++ ++ S++ + D G +D + KP E+ AR+ RR+ Sbjct: 63 L---KHIKAQKKVIPVVILTARSSIEDKVQGLDMGAEDYLAKPFEPAELFARLRVASRRV 119 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + G + + + + + LPR+E +L+ L+ N+G+ +K Q+ + +Y Sbjct: 120 NQAQSSLLQCGEVTMDTSAHSVTLNDGLLSLPRKEYMLLKALLENQGRVQSKQQLENKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E V N +E HI LRKK + D + + R +GY + Sbjct: 180 Q-WGEEVGSNTIEVHIHHLRKKFPS----DFIKTLRGIGYVV 216 >gi|228983771|ref|ZP_04143968.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775966|gb|EEM24335.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 229 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 5/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + RI + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR Sbjct: 68 IQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSL 127 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G Sbjct: 128 TTKQTIRYKGIELFGKDKDVQVDGQGMKLTLKQYELLEYLIQNSGKILMREQIFDRVWG- 186 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 FD +VE ++ LRKKL G+ + + R +GY Sbjct: 187 FDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224 >gi|229171355|ref|ZP_04298940.1| Two-component response regulator [Bacillus cereus MM3] gi|228612059|gb|EEK69296.1| Two-component response regulator [Bacillus cereus MM3] Length = 229 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 77 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 136 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 137 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 195 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 196 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224 >gi|118476259|ref|YP_893410.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|118415484|gb|ABK83903.1| response regulator [Bacillus thuringiensis str. Al Hakam] Length = 232 Score = 67.8 bits (164), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 80 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 139 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 140 GIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 198 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 199 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 227 >gi|225027370|ref|ZP_03716562.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353] gi|224955313|gb|EEG36522.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353] Length = 225 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 9/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +SQVP+I ++ L+ FD GVD+ ++KP + ++ARV AI RR SNN + Sbjct: 70 IRQYSQVPIIMLTAKGEESDELNGFDLGVDEYISKPFSPKILVARVEAILRR---SNNLS 126 Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G I + + + G+ L +E +L Y + N+G +++ +I + ++ + Sbjct: 127 TGEVLKAGGIELDIAAHEVRIDGKEITLSFKEFELLNYFVVNQGVALSREKILNNVWN-Y 185 Query: 182 DEAVEENVVESHISKLRKKLRNK 204 D + +++H+ KLR KL K Sbjct: 186 DYFGDARTIDTHVKKLRSKLGEK 208 >gi|34580940|ref|ZP_00142420.1| transcriptional activator protein czcR [Rickettsia sibirica 246] gi|28262325|gb|EAA25829.1| transcriptional activator protein czcR [Rickettsia sibirica 246] Length = 237 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A + P++ +S + F SG DD + KP E++AR+ AI RR S Sbjct: 63 LLRLRAAKIKTPILILSSLTDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRR---S 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + + V D R EV G+ L +E ILE L+ RG + K + +Y Sbjct: 120 KGHAASVFRFDKVSVNLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 DE E +++ I KLRKKL + G D +D+ GY + Sbjct: 180 SSVDEP-EMKIIDVFICKLRKKLSDAACGRDYIDTVWGRGYML 221 >gi|45441575|ref|NP_993114.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis biovar Microtus str. 91001] gi|51596756|ref|YP_070947.1| DNA-binding transcriptional regulator PhoP [Yersinia pseudotuberculosis IP 32953] gi|145599096|ref|YP_001163172.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis Pestoides F] gi|153948628|ref|YP_001400585.1| PhoP family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|162418657|ref|YP_001607237.1| DNA-binding transcriptional regulator PhoP [Yersinia pestis Angola] gi|186895824|ref|YP_001872936.1| DNA-binding transcriptional regulator PhoP [Yersinia pseudotuberculosis PB1/+] gi|229894482|ref|ZP_04509664.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Yersinia pestis Pestoides A] gi|14133539|gb|AAK54056.1|AF333124_1 regulator protein PhoP [Yersinia pseudotuberculosis] gi|14133543|gb|AAK54058.1|AF333125_1 regulator protein PhoP [Yersinia pseudotuberculosis] gi|45436436|gb|AAS61991.1| response regulator protein [Yersinia pestis biovar Microtus str. 91001] gi|51590038|emb|CAH21672.1| response regulator protein [Yersinia pseudotuberculosis IP 32953] gi|145210792|gb|ABP40199.1| response regulator protein [Yersinia pestis Pestoides F] gi|152960123|gb|ABS47584.1| transcriptional regulatory protein PhoP [Yersinia pseudotuberculosis IP 31758] gi|162351472|gb|ABX85420.1| transcriptional regulatory protein PhoP [Yersinia pestis Angola] gi|186698850|gb|ACC89479.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] gi|229703501|gb|EEO90518.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Yersinia pestis Pestoides A] Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 108/223 (48%), Gaps = 5/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ + G ++ + ++ D++ I+ L GE L Sbjct: 4 LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 L R R+H + +P++ ++ S Q + ++G DD V KP H E++AR+ A+ RR + Sbjct: 62 LIRRWRSHQENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ E P ++ R+ V + L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E E + ++ + +LRKKL + + + + R GY D N Sbjct: 181 DAELRESHTIDVLMGRLRKKLLAEHQGEVITTIRGQGYRFDVN 223 >gi|206968423|ref|ZP_03229379.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218232940|ref|YP_002365368.1| DNA-binding response regulator [Bacillus cereus B4264] gi|206737343|gb|EDZ54490.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218160897|gb|ACK60889.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 71 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 131 GIELFGKDKDVQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 189 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218 >gi|221195264|ref|ZP_03568320.1| DNA-binding response regulator [Atopobium rimae ATCC 49626] gi|221185167|gb|EEE17558.1| DNA-binding response regulator [Atopobium rimae ATCC 49626] Length = 257 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 84/169 (49%), Gaps = 21/169 (12%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L+L R +R HS+ ++ +S S+ + D+G DD + KP E+ AR+ + RR Sbjct: 88 LDLLRTLRREHSETKVLILSARSSVADRIVGLDAGADDYLVKPFAFGELEARIRNLLRRE 147 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L R +T +VF+ +D EV L ++E ILEYLM G V+ Sbjct: 148 YTHGETSLVSGELRLDTASRQVFA--KDSEVN-----LTKKETAILEYLMRRAGTVVSSE 200 Query: 172 QIFSAIYGLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ S + D V+ N V HI +RKKLR LG+DP+ +K GY Sbjct: 201 ELLSHAW---DSNVDPFSNSVRVHIFSVRKKLREVLGYDPISNKVGEGY 246 >gi|310816018|ref|YP_003963982.1| cell cycle transcriptional regulator CtrA [Ketogulonicigenium vulgare Y25] gi|308754753|gb|ADO42682.1| cell cycle transcriptional regulator CtrA [Ketogulonicigenium vulgare Y25] Length = 238 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 4/153 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL R+ R + P++ +S + L F G DD + KP E++AR+ AI Sbjct: 59 GHDVLRQLRLARVDT--PILILSGSDDTDSKLKGFGFGADDYMTKPFQREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + TG I V D + +V+G L +E ++LE L +G + K + Sbjct: 117 RRSKGHAQSVINTGRIAVNLDTKTVDVEGAPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 +YG DE E +++ I KLRKKL G D Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSVATGGD 208 >gi|49484576|ref|YP_041800.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257423843|ref|ZP_05600272.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257426526|ref|ZP_05602928.1| response regulator protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431808|ref|ZP_05608171.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257434768|ref|ZP_05610819.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|282902273|ref|ZP_06310166.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus C160] gi|282906702|ref|ZP_06314550.1| heme response regulator hssR [Staphylococcus aureus subsp. aureus Btn1260] gi|282909678|ref|ZP_06317487.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911924|ref|ZP_06319720.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282915220|ref|ZP_06322997.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus M899] gi|282920944|ref|ZP_06328662.1| two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus C427] gi|282925850|ref|ZP_06333498.1| two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus C101] gi|283959142|ref|ZP_06376583.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus A017934/97] gi|293497616|ref|ZP_06665470.1| two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus 58-424] gi|293511195|ref|ZP_06669891.1| two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus M809] gi|293549803|ref|ZP_06672475.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus M1015] gi|295428942|ref|ZP_06821566.1| two-component system response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus EMRSA16] gi|81696435|sp|Q6GE73|HSSR_STAAR RecName: Full=Heme response regulator hssR gi|49242705|emb|CAG41429.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257272861|gb|EEV04963.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257276157|gb|EEV07608.1| response regulator protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257282687|gb|EEV12819.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257285364|gb|EEV15480.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|282312679|gb|EFB43083.1| two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus C101] gi|282315359|gb|EFB45743.1| two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus C427] gi|282320941|gb|EFB51275.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus M899] gi|282323620|gb|EFB53936.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282326252|gb|EFB56556.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329601|gb|EFB59122.1| heme response regulator hssR [Staphylococcus aureus subsp. aureus Btn1260] gi|282596732|gb|EFC01691.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus C160] gi|283788734|gb|EFC27561.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus A017934/97] gi|290918850|gb|EFD95926.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus M1015] gi|291096547|gb|EFE26805.1| two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus 58-424] gi|291465821|gb|EFF08351.1| two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus M809] gi|295127291|gb|EFG56933.1| two-component system response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus EMRSA16] gi|315193627|gb|EFU24023.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS00] Length = 224 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 95/186 (51%), Gaps = 6/186 (3%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L R D++ ++ + G +L ++ +P+I ++ +L F SG DD Sbjct: 40 LLEKQRVDIAVVDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156 V KP +E++ R+ A+ RR +++N T G + + + +V + LP +E ++ Sbjct: 98 YVTKPFEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 157 Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 L +++A R K++ + QI I+G +D +E V+ HI +LR++L+ +++ R Sbjct: 158 L-FMLAARPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLKKLNATLTIETVRG 215 Query: 216 LGYSID 221 GY ++ Sbjct: 216 QGYKVE 221 >gi|311278058|ref|YP_003940289.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308747253|gb|ADO47005.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 219 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 103/221 (46%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D L+ DG A G +L+ F E + +A D ++ L G L Sbjct: 3 ILLVEDDKLIGDGLRAGLVKMGFTLDWFTRGEEGKAALLAAPYDAVILDLTL--PGIDGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R RA Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 61 DILRAWRAQGRQEPVLILTARDALAQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N + G + + D G PL +E +LE LM N G+ + + I +Y Sbjct: 121 GQATNALQHGKVTLNPDSLTATFDGAPLPLKPKEFALLELLMRNAGRVLPRKLIEEKLYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D+ V N VE H+ LR+ KLG D + + +GY++ Sbjct: 181 -WDDDVSSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|301052222|ref|YP_003790433.1| putative response regulator [Bacillus anthracis CI] gi|300374391|gb|ADK03295.1| probable response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 71 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 131 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 189 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218 >gi|270293142|ref|ZP_06199353.1| DNA-binding response regulator VncR [Streptococcus sp. M143] gi|270279121|gb|EFA24967.1| DNA-binding response regulator VncR [Streptococcus sp. M143] Length = 218 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/219 (23%), Positives = 106/219 (48%), Gaps = 6/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++G D G E + + +E L+ + +V+ + + LE Sbjct: 4 LIVEDEEMIREGISDYLTDCG--YETIEAADGQEALEKFSSYEVALVLLDIQMPKLNGLE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR SQVP++ ++ + + + F S D + KP + RV AI++R + Sbjct: 62 VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYDT 121 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +V + + GE + +E IL+YL+ N G+ + ++QI A++ + D Sbjct: 122 GRVFSYKDTKVDFESYSASLAGEEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKVTD 181 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E + V++ +I K+LR KL D + + R +GY ++ Sbjct: 182 EVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216 >gi|229182901|ref|ZP_04310134.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228600525|gb|EEK58112.1| Two-component response regulator [Bacillus cereus BGSC 6E1] Length = 229 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 77 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 136 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 137 GIELFGKDKDVQVNGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 195 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 196 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224 >gi|255306708|ref|ZP_05350879.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 85/153 (55%), Gaps = 7/153 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNNRAETG 129 P++ ++ +L ++ F G +D + KP + E++ARV AI R ++K N E Sbjct: 72 TPVLILTAKETLDDKVEAFTIGANDYLTKPFYMEELVARVYAILRTNGKIK-ERNGLEFK 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + + + ++ E L ++ +LEY + N+G + K QI+ I+G+ +A E + Sbjct: 131 SLYLDTLEKRVYIEKEEIKLQNKQFNLLEYFVLNKGSILLKEQIYDRIWGIDSDATIE-I 189 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 VE ++S LRKKL +K G+D + +KR +GY D Sbjct: 190 VEVYVSNLRKKL-SKYGYDKYIKTKRKVGYIFD 221 >gi|153010000|ref|YP_001371215.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151561888|gb|ABS15386.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] Length = 230 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 8/155 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 R+ +P++ ++ + D+G DD V KP H E+LAR+ A+ RR +++ Sbjct: 68 RSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAGHASSEL 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 GP+ + + V G L E R+L YLM + + V++T++ +Y FD Sbjct: 128 VCGPLYLDTKTSKASVNGVALKLTSHEYRLLSYLMHHMDEVVSRTELIEHLYDQDFDR-- 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E + +LRK K+G D +++ R +GY I Sbjct: 186 DSNTIEVFVGRLRK----KMGVDLIETVRGMGYRI 216 >gi|49480164|ref|YP_034830.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331720|gb|AAT62366.1| probable response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 71 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 131 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 189 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218 >gi|163939206|ref|YP_001644090.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861403|gb|ABY42462.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 63 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 122 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE PL +E +L +L + G+ ++ Q+ ++ Sbjct: 123 KQEQQEEIQFGPILINEKSRRVETNGETIPLTVKEFDLLYFLCQHNGQVFSREQLLEKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204 >gi|65317995|ref|ZP_00390954.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|228913258|ref|ZP_04076894.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228931999|ref|ZP_04094891.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944325|ref|ZP_04106698.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815227|gb|EEM61475.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827582|gb|EEM73324.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228846397|gb|EEM91413.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 229 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 77 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 136 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 137 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 195 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 196 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224 >gi|298290736|ref|YP_003692675.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296927247|gb|ADH88056.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 233 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 10/164 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VLE R R ++P++ ++ + FD+G DD V KP H E+LAR+ A+ Sbjct: 59 GLSVLEAWR--REGRKMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARIRALL 116 Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + + GP+ + + V G L E R+L YLM + G+ V++T++ Sbjct: 117 RRSAGHAASELTCGPVMLDTRSGRVTVDGRQVKLTSHEHRLLAYLMHHSGRVVSRTELVE 176 Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y FD + N +E + +LRKKL ++ + + R LGY Sbjct: 177 HLYDQDFDR--DSNTIEVFVGRLRKKLDVEV----IQTVRGLGY 214 >gi|289577955|ref|YP_003476582.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289527668|gb|ADD02020.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 102/215 (47%), Gaps = 17/215 (7%) Query: 10 LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L +GY L ++G + LE FN+ D+S I ++ L + IR Sbjct: 21 LENNGYEVLVAENGKIGLEYFNN-----------NNDISIILLDIMLPDISGWSLLKTIR 69 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRA 126 S+VP++ I+ L F+ G DD V KP +E++ARV AI R + + Sbjct: 70 EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAILARTSGESEVEKT 129 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 E I + R V GE L +E +L+ L+ N+GK V++ + + ++G +D + Sbjct: 130 EYEGISINVSSRQVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG-YDFYGD 188 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V++HI +LR+KL K + + +GY +D Sbjct: 189 LRTVDTHIKQLREKLGEKRKL--IKTVWGIGYKLD 221 >gi|291298109|ref|YP_003509387.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567329|gb|ADD40294.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 226 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ S + + G DD + KP RE++AR+ A+ RR Sbjct: 62 EVCRELRTTSNVPIIMVTARDSEVDKVVGLEIGADDYITKPYSPRELVARIRAVLRRNAE 121 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E+GP+R+ D V G PLP +E +LE + N G+ + + Q+ + Sbjct: 122 PTDPMVTVLESGPVRMDVDRHVVSVGGAEIPLPLKEFELLEMFLRNSGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ + G Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRSKIETEPG 209 >gi|92116986|ref|YP_576715.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799880|gb|ABE62255.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 10/164 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VLE R R +P++ ++ + FD+G DD V KP H EILAR+ A+ Sbjct: 59 GISVLEAWR--RNDRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARIRALL 116 Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + + GP+ + + V G + E R+L YLM + G+ V++T++ Sbjct: 117 RRSTGHAQSELSCGPVTLDTRTGRVSVSGNPVKMTSHEYRLLAYLMHHTGRVVSRTELVE 176 Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y FD + N +E + ++RK KL D + + R LGY Sbjct: 177 HLYDQDFDR--DSNTIEVFVGRIRK----KLDVDIIQTVRGLGY 214 >gi|30260728|ref|NP_843105.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525845|ref|YP_017194.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183566|ref|YP_026818.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165871773|ref|ZP_02216417.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635679|ref|ZP_02393990.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640647|ref|ZP_02398908.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688512|ref|ZP_02879719.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708249|ref|ZP_02898695.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177653779|ref|ZP_02935880.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568234|ref|ZP_03021143.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196035780|ref|ZP_03103183.1| DNA-binding response regulator [Bacillus cereus W] gi|196041341|ref|ZP_03108635.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227816558|ref|YP_002816567.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229600912|ref|YP_002865173.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684351|ref|ZP_05148211.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722153|ref|ZP_05183942.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254738815|ref|ZP_05196518.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743799|ref|ZP_05201483.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254755039|ref|ZP_05207073.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254762227|ref|ZP_05214071.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30254096|gb|AAP24591.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47500993|gb|AAT29669.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177493|gb|AAT52869.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712498|gb|EDR18031.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511362|gb|EDR86747.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528938|gb|EDR91694.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126905|gb|EDS95786.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667537|gb|EDT18293.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172081171|gb|EDT66247.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560726|gb|EDV14702.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195991747|gb|EDX55712.1| DNA-binding response regulator [Bacillus cereus W] gi|196027826|gb|EDX66439.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227006713|gb|ACP16456.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229265320|gb|ACQ46957.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 71 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 131 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 189 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218 >gi|225862542|ref|YP_002747920.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225787819|gb|ACO28036.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 71 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 131 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 189 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218 >gi|17548109|ref|NP_521511.1| response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430416|emb|CAD16889.1| probable response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 224 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 4/147 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPI 131 VP++ ++ + + +G DD + KP RE++AR+ + RR +N + G + Sbjct: 73 VPVMILTAAGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNTPANAVELQCGDL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + R + G LP RE +LE LM G+ V+K + + ++GL D+A E +E Sbjct: 133 SYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFGLEDDASPE-AIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 +I +LRKKL + + + R LGY Sbjct: 192 IYIHRLRKKLEHSAA--TIVTLRGLGY 216 >gi|324324610|gb|ADY19870.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 71 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 131 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 189 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218 >gi|311064941|ref|YP_003971667.1| two-component response regulator [Bifidobacterium bifidum PRL2010] gi|310867261|gb|ADP36630.1| Two-component response regulator [Bifidobacterium bifidum PRL2010] Length = 228 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 13/167 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + + Sbjct: 63 LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQGA 122 Query: 123 NNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G I + V+GE P +E +LEYLM N+G+ + + Q+ I+G Sbjct: 123 VDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQLIDRIWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221 D + ++ H+ K++R+K+ DP + + R LGY ID Sbjct: 183 -SDYVGDTKTLDVHV----KRVRSKIEEDPAHPQYLTTVRGLGYKID 224 >gi|218901766|ref|YP_002449600.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218539476|gb|ACK91874.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 71 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 131 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 189 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218 >gi|270296301|ref|ZP_06202501.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273705|gb|EFA19567.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 225 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 6/152 (3%) Query: 55 GKGEKVL-ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G G +L EL R+ R+ S ++ IS SL +D + G DD + KP H E+ ARV Sbjct: 57 GSGLDLLRELKRLHRSDS---VLIISAKDSLDDKVDGLELGADDYLTKPFHLAELNARVK 113 Query: 114 AIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ RR + + T G + ++ D R E+ G+ L R+E +L Y + N G+ + K Sbjct: 114 SLIRRRQAKGDVTVTLGNLLLYPDKRQVEINGKPLQLNRKEFDLLYYFVVNPGRVINKMS 173 Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRN 203 + +++G D+A + + S + LRKKL+ Sbjct: 174 LAESVWGDNIDQADSLDFIYSQVKNLRKKLKQ 205 >gi|228925760|ref|ZP_04088844.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229120222|ref|ZP_04249473.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228663263|gb|EEL18852.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228833775|gb|EEM79328.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 229 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 77 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 136 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 137 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 195 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 196 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224 >gi|187930667|ref|YP_001901154.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12J] gi|241664859|ref|YP_002983219.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12D] gi|309780335|ref|ZP_07675086.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] gi|187727557|gb|ACD28722.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|240866886|gb|ACS64547.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12D] gi|308921038|gb|EFP66684.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] Length = 226 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 6/164 (3%) Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ VL+ R+ + VP++ ++ + + +G DD + KP RE++AR+ + Sbjct: 58 SGQGVLQ--RLRGRRNPVPVLILTASGGIDDKVACLGAGADDYLVKPFEIRELIARIQVL 115 Query: 116 YRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + + G + + R + G+ LP RE +LE LM G+ V+K + Sbjct: 116 VRRSTPDQSVELQCGDLTYHTGSRTFNLAGQPLVLPAREHTVLEILMLKLGRTVSKPALV 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + ++G+ DEA E +E +I +LRKKL + + + R LGY Sbjct: 176 NGVFGMDDEASPE-AIEIYIHRLRKKLEHSAA--TIVTLRGLGY 216 >gi|227510515|ref|ZP_03940564.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227513524|ref|ZP_03943573.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227083397|gb|EEI18709.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227190167|gb|EEI70234.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 228 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 92/185 (49%), Gaps = 11/185 (5%) Query: 27 EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+++ L LQ++ E+ I L+ +E+ R +R P+I ++ S Sbjct: 24 EGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNGMEVARRLREKKNTPIIMMTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP-------IRVFSD 136 + + FD G DD + KP E+LAR+ A+ RR+++ N++ ++ + + + Sbjct: 84 VIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQIENDQQKSSKKSVTFKDLTIEKE 143 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 R EV L +RE +L LM N +A+ + + ++G +D VE NVV+ +I Sbjct: 144 SRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLLTKVWG-YDSEVETNVVDVYIRY 202 Query: 197 LRKKL 201 LR K+ Sbjct: 203 LRNKI 207 >gi|169350865|ref|ZP_02867803.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552] gi|169292451|gb|EDS74584.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552] Length = 216 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R Q P+I ++ + ++ G DD + KP E+LAR+ A+ RR+ Sbjct: 59 IEVCRQLRLKKQTPIIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRVS 118 Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N + + G I + + + E L E +L L+ N G V K I + ++ Sbjct: 119 NQNKSLKYKYGEIEIDVINHHVKFKDETITLTTTEFDLLSLLVQNGGNIVTKNDILNKVW 178 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +++ V NVVE +I + LRNKL +++ R +GY + Sbjct: 179 G-YEKNVSTNVVEVYI----RYLRNKLAGINIETIRGIGYRL 215 >gi|163814202|ref|ZP_02205594.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759] gi|158450651|gb|EDP27646.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759] Length = 235 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 3/140 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124 IR SQVP+I ++ + L F+ GVD+ + KP + ++ARVAAI RR S Sbjct: 80 IRKFSQVPVIMLTAKADERDELQGFNLGVDEYITKPFSPKILVARVAAILRRTSDAASEE 139 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 R G I + + G+ L +E +L+Y + NRG +++ +I + ++ +D Sbjct: 140 RLSAGGIDMDLSAHIVTIDGKPVELSFKEFELLQYFIVNRGVALSREKILNNVWN-YDYY 198 Query: 185 VEENVVESHISKLRKKLRNK 204 + +++H+ KLR K+ K Sbjct: 199 GDARTIDTHVKKLRSKMGAK 218 >gi|126699294|ref|YP_001088191.1| two-component response regulator [Clostridium difficile 630] gi|254975324|ref|ZP_05271796.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255092715|ref|ZP_05322193.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255100819|ref|ZP_05329796.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255314453|ref|ZP_05356036.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255517130|ref|ZP_05384806.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255650235|ref|ZP_05397137.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260683353|ref|YP_003214638.1| two-component response regulator [Clostridium difficile CD196] gi|260686948|ref|YP_003218081.1| two-component response regulator [Clostridium difficile R20291] gi|306520214|ref|ZP_07406561.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|115250731|emb|CAJ68555.1| Two-component response regulator [Clostridium difficile] gi|260209516|emb|CBA63087.1| two-component response regulator [Clostridium difficile CD196] gi|260212964|emb|CBE04255.1| two-component response regulator [Clostridium difficile R20291] Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 85/152 (55%), Gaps = 7/152 (4%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNNRAETGP 130 P++ ++ +L ++ F G +D + KP + E++ARV AI R ++K N E Sbjct: 73 PVLILTAKETLDDKVEAFTIGANDYLTKPFYMEELVARVYAILRTNGKIK-ERNGLEFKS 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + ++ E L ++ +LEY + N+G + K QI+ I+G+ +A E +V Sbjct: 132 LYLDTLEKRVYIEKEEIKLQNKQFNLLEYFVLNKGSILLKEQIYDRIWGIDSDATIE-IV 190 Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 E ++S LRKKL +K G+D + +KR +GY D Sbjct: 191 EVYVSNLRKKL-SKYGYDKYIKTKRKVGYIFD 221 >gi|319403800|emb|CBI77384.1| cell cycle transcriptional regulator CtrA [Bartonella rochalimae ATCC BAA-1498] Length = 233 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 21/191 (10%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74 YI G++G+ L +++ L D+S E + L L +I + P Sbjct: 28 YITDLGEEGIDLGKL--YDYDIILLDLNLPDMSGYEVL------RTLRLEKI-----KTP 74 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGP 130 ++ +S ++ + F G DD + KP H E++AR+ A+ RR S A+ TG Sbjct: 75 VLILSGMGGIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRR---SKGHAQSVIITGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V D + E+ G L +E ++LE L +G + K + +YG DE E ++ Sbjct: 132 LTVNLDAKTVEIAGRPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKII 190 Query: 191 ESHISKLRKKL 201 + I KLRKKL Sbjct: 191 DVFICKLRKKL 201 >gi|307944614|ref|ZP_07659954.1| cell cycle transcriptional regulator CtrA [Roseibium sp. TrichSKD4] gi|307772363|gb|EFO31584.1| cell cycle transcriptional regulator CtrA [Roseibium sp. TrichSKD4] Length = 230 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ + + P++ +S ++ + G DD + KP H E++AR+ AI Sbjct: 59 GYEVLRTLRVSKV--KTPILILSGNAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIV 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + TG ++V D + EV G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHAQSVIVTGDLKVNLDTKTVEVSGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +YG DE E +++ I KLRKKL Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201 >gi|229818366|ref|ZP_04448647.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM 20098] gi|229784236|gb|EEP20350.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM 20098] Length = 233 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 10/168 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + + Sbjct: 63 LCRRIREQSRVPIIMLTAKSTEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQSA 122 Query: 123 NNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G I + V+GE P +E +LEYLM N+G+ + + Q+ Sbjct: 123 QQQGSADDDVPLTCGDIVMRVGQHQVIVRGESVFFPLKEFELLEYLMQNKGRVLTRHQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 I+G D + ++ H+ ++R K+ + + + R LGY ID Sbjct: 183 DRIWG-ADYVGDTKTLDVHVKRVRAKIEEEPSHPKYLSTVRGLGYKID 229 >gi|42779713|ref|NP_976960.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42735630|gb|AAS39568.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 71 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 131 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 189 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218 >gi|56460749|ref|YP_156030.1| response regulator [Idiomarina loihiensis L2TR] gi|56179759|gb|AAV82481.1| Response regulator (CheY, wHTH domains) [Idiomarina loihiensis L2TR] Length = 221 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 11/220 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG--KGEK 59 +L++D + +G I G +E +L E S+ + D + F +G G Sbjct: 3 LLLLEDDKTLAEGIIKGLNRMGYMVELAMNLSQAE---SALKTDQFELAIFDLGLPDGNA 59 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 V + ++ +A VP++ ++ + + T + + G +D V KP RE+ ARV R+ Sbjct: 60 VSLIKKLRKAGQPVPIVVLTAWDDVDTKVLALNEGANDYVVKPFELRELEARVRVQVRKA 119 Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N+ G + V + Q ++ L R E +L+ L + GK V+K Q+ +A Y Sbjct: 120 NLQLNDVINCGDLSVDIASQQCRFQRKLINLTRLEWILLKQLALHVGKIVSKEQLETACY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G +D E N +E HI LRKKL L + + R LGY Sbjct: 180 G-WDSDNESNSLEVHIHHLRKKLNPSL----ITTIRGLGY 214 >gi|167037940|ref|YP_001665518.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116355|ref|YP_004186514.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856774|gb|ABY95182.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929446|gb|ADV80131.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 224 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 105/216 (48%), Gaps = 18/216 (8%) Query: 10 LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L +GY L ++G + LE FN+ +D+S I ++ L + IR Sbjct: 21 LENNGYEVLVAENGKIGLEYFNN-----------NKDISIILLDIMLPDISGWSLLKTIR 69 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NR 125 S+VP++ I+ L F+ G DD V KP +E++ARV AI R ++ + Sbjct: 70 EKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTYGASEEEGK 129 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E I + R+ V GE L +E +L+ L+ N+GK V++ + + ++G +D Sbjct: 130 TEYEGISINVSFREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG-YDFYG 188 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V++HI +LR+KL K + + +GY +D Sbjct: 189 DLRTVDTHIKQLREKLGEKRKL--IKTVWGIGYKLD 222 >gi|134291674|ref|YP_001115443.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134863|gb|ABO59188.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 220 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 18/172 (10%) Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G ++L R R H+ P++ ++ ++ + +G DD + KP E++AR A+ Sbjct: 58 SGVELLAWLRKRRDHT--PVLVMTARDTVADRVSGLSAGADDYLGKPFDLTELVARCRAL 115 Query: 116 YRRLKV-SNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVA 169 RR + S + E G + V DP + E L RE +L L++N+G+ ++ Sbjct: 116 VRRSQGRSTDTIEYGDLSV-----DPALMTATRGAERIALTSRECALLVELLSNQGRPLS 170 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + Q+ ++YG ++E +E N +E H+S LRK KLG D + + R +GY ++ Sbjct: 171 RAQLQDSLYG-WNEEIESNAIEVHVSNLRK----KLGADLIRTIRGVGYVVE 217 >gi|331002395|ref|ZP_08325913.1| hypothetical protein HMPREF0491_00775 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410211|gb|EGG89645.1| hypothetical protein HMPREF0491_00775 [Lachnospiraceae oral taxon 107 str. F0167] Length = 220 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 10/168 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL+ R A S+V ++ D +L + D G +D + KP H RE+ AR+ + Sbjct: 59 GLEVLKTIREDNAESKVIILSARD--TLNDKVLGLDLGANDYLVKPFHFRELEARIRVLL 116 Query: 117 RRLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R +N+ R E+ I ++ + + GE+ PL +E I EYL N+G ++ ++ Sbjct: 117 RNNYSTNDDTIRIESQDITLYLSKKQVQKGGEIIPLTPKEYSIFEYLCINKGNLISTGEL 176 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + V++ HI+ +RK KLG D + + R +GY+I+ Sbjct: 177 LEHNIDM-NANDASTVIKVHIAAIRK----KLGSDVIKTNRGMGYTIN 219 >gi|291445797|ref|ZP_06585187.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348744|gb|EFE75648.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R+ S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 59 EVCRQLRSRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 179 WGA-DYVGDTKTLDVHVKRLRAKIEPDPG 206 >gi|238758418|ref|ZP_04619595.1| Two-component response regulator of virulence determinant [Yersinia aldovae ATCC 35236] gi|238703322|gb|EEP95862.1| Two-component response regulator of virulence determinant [Yersinia aldovae ATCC 35236] Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 113/224 (50%), Gaps = 7/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G ++ ++ E + +LQ A D++ I+ L GE L Sbjct: 4 LVVEDNALLRHHLTVQMREMGHQVDAAEDTKEADYFLQEHA-PDIAIIDLGL--PGEDGL 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L R R+H + +P++ ++ S Q + ++G DD V KP H E++AR+ A+ RR + Sbjct: 61 SLIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNI 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ E P ++ R+ V + L E I+E L+ N GK V+K + +Y Sbjct: 121 GLASQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E E + ++ + +LRKKL + + + + R GY D N Sbjct: 181 -DAELRESHTIDVLMGRLRKKLLAEHEGEVITTIRGQGYRFDAN 223 >gi|255655706|ref|ZP_05401115.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296451712|ref|ZP_06893444.1| DNA-binding response regulator [Clostridium difficile NAP08] gi|296878956|ref|ZP_06902955.1| DNA-binding response regulator [Clostridium difficile NAP07] gi|296259475|gb|EFH06338.1| DNA-binding response regulator [Clostridium difficile NAP08] gi|296430069|gb|EFH15917.1| DNA-binding response regulator [Clostridium difficile NAP07] Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 85/153 (55%), Gaps = 7/153 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNNRAETG 129 P++ ++ +L ++ F G +D + KP + E++ARV AI R ++K N E Sbjct: 72 TPVLILTAKETLDDKVEAFTIGANDYLTKPFYMEELVARVYAILRTNGKIK-ERNGLEFK 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + + + ++ E L ++ +LEY + N+G + K QI+ I+G+ +A E + Sbjct: 131 SLYLDTLEKRVYIEKEEIKLQNKQFNLLEYFVLNKGSILLKEQIYDRIWGIDSDATIE-I 189 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 VE ++S LRKKL +K G+D + +KR +GY D Sbjct: 190 VEVYVSNLRKKL-SKYGYDKYIKTKRKVGYIFD 221 >gi|218662767|ref|ZP_03518697.1| probable two-component response regulator protein [Rhizobium etli IE4771] Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 111/227 (48%), Gaps = 21/227 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL---IGKGE 58 +LI+D + + A G G+ + +++ + ++ + + AI L + GE Sbjct: 3 ILLIEDEKELAEALTAALGKHGIVTD--HTVHLADAVELTRQNPYDAI--LLDRRLPDGE 58 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + +P + R P+I ++ + + ++ D G DD + KP E++AR+ A+ RR Sbjct: 59 GLRFIPELRRTGKDTPIIVLTALNAPKERVEGLDLGADDYLGKPFLVEELMARLRAVLRR 118 Query: 119 ------LKVSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 LK++ R P+ + + G P LPRRE +L L + K V ++ Sbjct: 119 PPSLSELKITAGRMVIDPLHLSVTVGDTP------LDLPRRELLVLAALARRKEKTVLRS 172 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +A+Y ++E ++ N +++HIS+LRK+L + + + R +GY Sbjct: 173 TLEAAVYN-YEEEIQSNALDAHISRLRKRLADAGAEVSIHNIRGVGY 218 >gi|166033420|ref|ZP_02236249.1| hypothetical protein DORFOR_03146 [Dorea formicigenerans ATCC 27755] gi|166026605|gb|EDR45362.1| hypothetical protein DORFOR_03146 [Dorea formicigenerans ATCC 27755] Length = 228 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 87/161 (54%), Gaps = 6/161 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + +++ + ++ +S + ++ D+G +D + KP H +E+ AR+ ++ RR V Sbjct: 65 LKELRQSNEETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRKFVQ 124 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E+G I+ + R+ + L R+E+ ILEYL+ N G+ V++ ++ ++ Sbjct: 125 KDVCLESGDIKFDTIKREAYAKEIKISLTRKEKGILEYLLLNLGRPVSQEELMEHVW--- 181 Query: 182 DEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +V+ + H+S LR+KL+ LG D + +K GY I Sbjct: 182 DASVDSFSGAIRVHMSSLRRKLKAVLGHDVIMNKVGEGYKI 222 >gi|15925351|ref|NP_372885.1| two component response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|15927941|ref|NP_375474.1| hypothetical protein SA2151 [Staphylococcus aureus subsp. aureus N315] gi|21284011|ref|NP_647099.1| hypothetical protein MW2282 [Staphylococcus aureus subsp. aureus MW2] gi|49487144|ref|YP_044365.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|87161981|ref|YP_494943.1| response regulator protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196283|ref|YP_501105.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268798|ref|YP_001247741.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394868|ref|YP_001317543.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156980676|ref|YP_001442935.1| hypothetical protein SAHV_2345 [Staphylococcus aureus subsp. aureus Mu3] gi|161510555|ref|YP_001576214.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142609|ref|ZP_03567102.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314701|ref|ZP_04837914.1| response regulator protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255007137|ref|ZP_05145738.2| response regulator protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794703|ref|ZP_05643682.1| response regulator receiver [Staphylococcus aureus A9781] gi|258407383|ref|ZP_05680526.1| two-component system response regulator receiver [Staphylococcus aureus A9763] gi|258422289|ref|ZP_05685201.1| response regulator protein [Staphylococcus aureus A9719] gi|258439681|ref|ZP_05690427.1| two component response regulator [Staphylococcus aureus A9299] gi|258442762|ref|ZP_05691322.1| heme response regulator hssR [Staphylococcus aureus A8115] gi|258446538|ref|ZP_05694693.1| two component response regulator [Staphylococcus aureus A6300] gi|258450345|ref|ZP_05698437.1| two component transcriptional regulator [Staphylococcus aureus A6224] gi|258451333|ref|ZP_05699366.1| response regulator receiver [Staphylococcus aureus A5948] gi|258455279|ref|ZP_05703239.1| two component transcriptional regulator [Staphylococcus aureus A5937] gi|262048779|ref|ZP_06021660.1| hypothetical protein SAD30_0626 [Staphylococcus aureus D30] gi|262051514|ref|ZP_06023735.1| hypothetical protein SA930_1282 [Staphylococcus aureus 930918-3] gi|269203993|ref|YP_003283262.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ED98] gi|282893807|ref|ZP_06302039.1| heme response regulator hssR [Staphylococcus aureus A8117] gi|282917713|ref|ZP_06325464.1| two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus D139] gi|282920347|ref|ZP_06328070.1| two-component system, OmpR family, response regulator [Staphylococcus aureus A9765] gi|282926915|ref|ZP_06334542.1| two-component system, OmpR family, response regulator [Staphylococcus aureus A10102] gi|283767450|ref|ZP_06340365.1| two-component system OmpR family response regulator [Staphylococcus aureus subsp. aureus H19] gi|284025384|ref|ZP_06379782.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 132] gi|294848904|ref|ZP_06789649.1| two-component system [Staphylococcus aureus A9754] gi|295405048|ref|ZP_06814861.1| two-component system [Staphylococcus aureus A8819] gi|296275447|ref|ZP_06857954.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MR1] gi|297244105|ref|ZP_06927995.1| two-component system [Staphylococcus aureus A8796] gi|81696274|sp|Q6G6V9|HSSR_STAAS RecName: Full=Heme response regulator hssR gi|81704182|sp|Q7A039|HSSR_STAAW RecName: Full=Heme response regulator hssR gi|81705166|sp|Q7A3X1|HSSR_STAAN RecName: Full=Heme response regulator hssR gi|81781023|sp|Q99RR6|HSSR_STAAM RecName: Full=Heme response regulator hssR gi|122538783|sp|Q2FVQ9|HSSR_STAA8 RecName: Full=Heme response regulator hssR gi|123484649|sp|Q2FED5|HSSR_STAA3 RecName: Full=Heme response regulator hssR gi|187609569|sp|A7X5Y5|HSSR_STAA1 RecName: Full=Heme response regulator hssR gi|187609570|sp|A6U488|HSSR_STAA2 RecName: Full=Heme response regulator hssR gi|187609571|sp|A5IVE2|HSSR_STAA9 RecName: Full=Heme response regulator hssR gi|187609573|sp|A8Z552|HSSR_STAAT RecName: Full=Heme response regulator hssR gi|13702312|dbj|BAB43453.1| SA2151 [Staphylococcus aureus subsp. aureus N315] gi|14248135|dbj|BAB58523.1| similar to two component response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|21205454|dbj|BAB96147.1| MW2282 [Staphylococcus aureus subsp. aureus MW2] gi|49245587|emb|CAG44065.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|87127955|gb|ABD22469.1| response regulator protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203841|gb|ABD31651.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741867|gb|ABQ50165.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149947320|gb|ABR53256.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156722811|dbj|BAF79228.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160369364|gb|ABX30335.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257788675|gb|EEV27015.1| response regulator receiver [Staphylococcus aureus A9781] gi|257840895|gb|EEV65346.1| two-component system response regulator receiver [Staphylococcus aureus A9763] gi|257841720|gb|EEV66157.1| response regulator protein [Staphylococcus aureus A9719] gi|257847457|gb|EEV71459.1| two component response regulator [Staphylococcus aureus A9299] gi|257851883|gb|EEV75817.1| heme response regulator hssR [Staphylococcus aureus A8115] gi|257854606|gb|EEV77554.1| two component response regulator [Staphylococcus aureus A6300] gi|257856437|gb|EEV79346.1| two component transcriptional regulator [Staphylococcus aureus A6224] gi|257861125|gb|EEV83940.1| response regulator receiver [Staphylococcus aureus A5948] gi|257862490|gb|EEV85258.1| two component transcriptional regulator [Staphylococcus aureus A5937] gi|259160498|gb|EEW45521.1| hypothetical protein SA930_1282 [Staphylococcus aureus 930918-3] gi|259163037|gb|EEW47598.1| hypothetical protein SAD30_0626 [Staphylococcus aureus D30] gi|262076283|gb|ACY12256.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ED98] gi|269941947|emb|CBI50358.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus TW20] gi|282318468|gb|EFB48827.1| two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus D139] gi|282591366|gb|EFB96439.1| two-component system, OmpR family, response regulator [Staphylococcus aureus A10102] gi|282594293|gb|EFB99279.1| two-component system, OmpR family, response regulator [Staphylococcus aureus A9765] gi|282763865|gb|EFC03993.1| heme response regulator hssR [Staphylococcus aureus A8117] gi|283461329|gb|EFC08413.1| two-component system OmpR family response regulator [Staphylococcus aureus subsp. aureus H19] gi|285818024|gb|ADC38511.1| Two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus 04-02981] gi|294824283|gb|EFG40707.1| two-component system [Staphylococcus aureus A9754] gi|294969993|gb|EFG46011.1| two-component system [Staphylococcus aureus A8819] gi|297178883|gb|EFH38128.1| two-component system [Staphylococcus aureus A8796] gi|302752233|gb|ADL66410.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|312830708|emb|CBX35550.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128716|gb|EFT84717.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315197445|gb|EFU27782.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp. aureus CGS01] gi|329315049|gb|AEB89462.1| Heme response regulator hssR [Staphylococcus aureus subsp. aureus T0131] gi|329723627|gb|EGG60156.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus 21172] gi|329726694|gb|EGG63155.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus 21189] gi|329730100|gb|EGG66490.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus 21193] Length = 224 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 95/186 (51%), Gaps = 6/186 (3%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L R D++ ++ + G +L ++ +P+I ++ +L F SG DD Sbjct: 40 LLEKQRVDIAVVDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156 V KP +E++ R+ A+ RR +++N T G + + + +V + LP +E ++ Sbjct: 98 YVTKPFEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 157 Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 L +++A R K++ + QI I+G +D +E V+ HI +LR++L+ +++ R Sbjct: 158 L-FMLAARPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLKKLNATLTIETVRG 215 Query: 216 LGYSID 221 GY ++ Sbjct: 216 QGYKVE 221 >gi|322389246|ref|ZP_08062806.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321143990|gb|EFX39408.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 251 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R KV+ N G + Sbjct: 98 TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKVNENTLNYGNL 157 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 +V V G+ L +E +L Y + N+ + KTQIF ++G FD +VVE Sbjct: 158 KVNLSTNSTYVDGKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVE 216 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + + R +GY Sbjct: 217 VYVSKIRKKLKGTDFVESLQTLRSVGY 243 >gi|229010688|ref|ZP_04167886.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229057028|ref|ZP_04196422.1| Two-component response regulator [Bacillus cereus AH603] gi|229132193|ref|ZP_04261050.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229166232|ref|ZP_04293991.1| Two-component response regulator [Bacillus cereus AH621] gi|228617177|gb|EEK74243.1| Two-component response regulator [Bacillus cereus AH621] gi|228651241|gb|EEL07219.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228720305|gb|EEL71881.1| Two-component response regulator [Bacillus cereus AH603] gi|228750582|gb|EEM00410.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 218 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 58 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE PL +E +L +L + G+ ++ Q+ ++ Sbjct: 118 KQEQQEEIQFGPILINEKSRRVETNGETIPLTVKEFDLLYFLCQHNGQVFSREQLLEKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199 >gi|254388535|ref|ZP_05003769.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197702256|gb|EDY48068.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 59 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 179 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 206 >gi|84622740|ref|YP_450112.1| hypothetical protein XOO_1083 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366680|dbj|BAE67838.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 232 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 6/131 (4%) Query: 92 DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLP 150 D G DD + KP E+LAR A+ RR A + G +R+ G G L Sbjct: 92 DVGADDYLGKPFDTNELLARTRALLRRSAGRTQPALQAGALRLDPAGMSVRWHGRDLDLT 151 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 RRE +L LM RG+ + + +I +YG +DE V N V+ H+ +LR+KL + + Sbjct: 152 RREFALLWLLMEQRGRPIGRERIQQHLYG-WDEDVASNAVDVHVHQLRRKLSAAV----I 206 Query: 211 DSKRFLGYSID 221 + R +GY++D Sbjct: 207 RTIRGIGYALD 217 >gi|299065128|emb|CBJ36292.1| putative response regulator, CheY family [Ralstonia solanacearum CMR15] Length = 224 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 4/147 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPI 131 VP++ ++ + + +G DD + KP RE++AR+ + RR +N + G + Sbjct: 73 VPVMILTAAGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNTPANAVELQCGDL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + R + G LP RE +LE LM G+ V+K + + ++GL D+A E +E Sbjct: 133 SYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFGLEDDASPE-AIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 +I +LRKKL + + + R LGY Sbjct: 192 IYIHRLRKKLEHSAA--TIVTLRGLGY 216 >gi|295094962|emb|CBK84053.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 220 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 5/158 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + IR S VP+I ++ S + G DD + KP + +L R+AA+ +R++ S Sbjct: 63 LVKEIRKESDVPIIMVTSRTSEMDEVLSMSYGADDYITKPYNPTILLLRIAAVLKRMEGS 122 Query: 123 NNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N A V FS G + E+ L + E I + L+ANR K V++ +I + ++ Sbjct: 123 QNTASYRDAEVNFSKGTISKGDQEMV-LTKNEMIIFQLLLANREKIVSRDEIMTDLWD-N 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 DE V +N + +IS+LR KL + LG+ D +++++ GY Sbjct: 181 DEFVNDNALTVNISRLRGKLAD-LGYDDAIETRKKQGY 217 >gi|257440389|ref|ZP_05616144.1| subtilin biosynthesis regulatory protein SpaR [Faecalibacterium prausnitzii A2-165] gi|257197138|gb|EEU95422.1| subtilin biosynthesis regulatory protein SpaR [Faecalibacterium prausnitzii A2-165] Length = 226 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 2/147 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE + R IR + P++ ++ + L+ G DD + KP E+ ARVAA Sbjct: 56 GEDGFAVCRRIRGLTDAPILFLTARTDEASVLEGLGIGADDYLAKPFRVAELRARVAAHL 115 Query: 117 RRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + +R G + R+ V PL R E I EYL + G+ K QI+ Sbjct: 116 RRQNRTPVHRLVRGGVSFDLSAREAAVGETPLPLTRSEYAICEYLALHAGQTFTKEQIYE 175 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR 202 A++G+ D ++ V HI +R KLR Sbjct: 176 AVFGI-DGTADDTAVTQHIKNIRSKLR 201 >gi|229089633|ref|ZP_04220895.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228693663|gb|EEL47364.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 229 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 77 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 136 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 137 GIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 195 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 196 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224 >gi|254524029|ref|ZP_05136084.1| transcriptional regulatory protein KdpE [Stenotrophomonas sp. SKA14] gi|219721620|gb|EED40145.1| transcriptional regulatory protein KdpE [Stenotrophomonas sp. SKA14] Length = 237 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 27/192 (14%) Query: 35 EEWLQSSAREDVSAIEAFLIG----KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDF 90 +E LQ +A ED+ + IG +G +VLE +R SQVP+I ++ + Sbjct: 46 QEGLQLAASEDMDLV-ILDIGLPDMEGHEVLEQ---LRQWSQVPVIMLTVRAGEAEKVRA 101 Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEV 142 D+G +D V KP +E++ARV A+ R V ++ G VF DG R+ + Sbjct: 102 LDTGANDYVTKPFGTQELMARVRALLRTRSVPSD----GTPPVFDDGHLHVDLVRREVAL 157 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK-LRKKL 201 GE L R+E +L L+ N G+ V + QI I+G + ++H + L KL Sbjct: 158 DGEPVALTRKEYALLSLLLRNAGRVVTQPQILQEIWGPTHQQ------DTHYLRILVGKL 211 Query: 202 RNKLGFDPVDSK 213 R+KLG +DS+ Sbjct: 212 RHKLGDSALDSR 223 >gi|162147251|ref|YP_001601712.1| two-component response regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785828|emb|CAP55399.1| Two-component response regulator [Gluconacetobacter diazotrophicus PAl 5] Length = 226 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 88/189 (46%), Gaps = 8/189 (4%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGV 95 +L S D+ ++ L G G L L IRA + P++ +S + + +G Sbjct: 38 FLAVSENFDLIILDRMLPG-GIDGLRLLETIRAQNNSTPVLLLSALADVDDRVQGLKAGG 96 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRR 152 DD V KP E+LARV A+ RR + N R + + R G L R Sbjct: 97 DDYVTKPFAFSELLARVEALSRRGRSDNAPLTRLNVADLEIDLLSRSSAAAGSRIDLQPR 156 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 E R+LEYLM N G+ V +T + ++ FD + NV++ H+S+LR+K+ + Sbjct: 157 EFRLLEYLMRNAGQVVTRTMLLEGVWDYHFDP--QTNVIDVHVSRLRQKVDKPFDTPLIH 214 Query: 212 SKRFLGYSI 220 + R GY + Sbjct: 215 TIRNAGYML 223 >gi|163940379|ref|YP_001645263.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862576|gb|ABY43635.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 221 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 7/163 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 E+ ++IR+ S VP+I ++ + + FD G+DD + KP ++ RV A+ RR Sbjct: 63 FEVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSY 122 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K NN +R+ D V L +E IL+ L N K + + I ++ Sbjct: 123 DKNVNNHLVFKEVRIDVDAYRVYVNDVEILLTIKEFEILQLLFQNERKVLTRENIVEKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +D E ++++HI LRK KL + + + +GY ID Sbjct: 183 G-YDYFGETRIIDTHIKNLRK----KLAIPYIKTIKGIGYKID 220 >gi|113968585|ref|YP_732378.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|114049267|ref|YP_739817.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|113883269|gb|ABI37321.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] gi|113890709|gb|ABI44760.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 220 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 85/150 (56%), Gaps = 7/150 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131 +P++ ++ + +D +G DD + KP H E+LAR+ A+ RR ++N + + Sbjct: 73 MPVLILTARDAWHERVDGLKAGADDYLGKPFHVEELLARLEALIRRHFGRADNLLQHAGV 132 Query: 132 RVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + D + +G+V L + E R+L YLMAN K V+K+++ IY ++ + NV+ Sbjct: 133 SLDVDKQAVTNAEGDVIELTKIEYRLLHYLMANPTKIVSKSELSERIYE-EEQIKDSNVI 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++++LR+ +LG D ++++R GY + Sbjct: 192 EVYVNRLRQ----RLGKDYIETRRGQGYRL 217 >gi|94314049|ref|YP_587258.1| OmpR/winged helix family two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357901|gb|ABF11989.1| two component transcriptional regulator, OmpR/winged helix family [Cupriavidus metallidurans CH34] Length = 223 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +A + VP++ ++ S ++ D+G DD + KP E+LAR+ A+ RR Sbjct: 63 LKRWRQAGNGVPVLILTARDSWVEKVEGIDAGADDYLTKPFRAEELLARIRALIRRSTGH 122 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + GP+ + V G L E ++L+YLM ++G V+KT + IY Sbjct: 123 TSPVLVCGPVTLAPATGQVSVDGSPIVLTAHEYKVLDYLMHHQGVIVSKTTLTEHIYA-Q 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E + +LR+ KLG D +++ R LGY + Sbjct: 182 DHDRDSNTIEVFVGRLRR----KLGVDVIETVRGLGYRL 216 >gi|251780726|ref|ZP_04823646.1| two-component response regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085041|gb|EES50931.1| two-component response regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 228 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ K ++ + IR S +P+I ++ L + FD G DD + KP E+LAR+ Sbjct: 57 LLTKNLNGMDFLKWIRKQSNIPMIVVTSNNCLFDKVLAFDIGADDYILKPFKVEELLARM 116 Query: 113 AAIYRRLKVSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 AI RR + +++++ I S + ++G + LP +E +L +L+ N K Sbjct: 117 KAIIRRCSIESDKSDIISISDLSVNLSTYEVFLKGNIINLPPKEFELLVFLLKNSNKLFT 176 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 + ++ I+G D + ++ HI +LR+K Sbjct: 177 RKELLDEIWG-NDNKSDCRTIDVHIKRLREK 206 >gi|283795144|ref|ZP_06344297.1| DNA-binding response regulator VanRB [Clostridium sp. M62/1] gi|291076787|gb|EFE14151.1| DNA-binding response regulator VanRB [Clostridium sp. M62/1] Length = 224 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 20/195 (10%) Query: 42 AREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLDF 90 A + + IE F K + VL LP+I +R S+VP+I ++ + + Sbjct: 32 AADGLEGIEQFRANKPDLVLLDLMLPKIDGFAVCEILRKESRVPIIMLTALDDEDSQMKG 91 Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEV 146 FD+ DD + KP ++ + A+ RR + N I V +D V Sbjct: 92 FDALADDYITKPFSMPVVMKHIEAVLRRAEQGGAAPNTVIRYKEITVDTDSLTVLVGTGS 151 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L RE IL+ L+ N+G+ V++ ++ ++G +D +E +V +HI K +R KLG Sbjct: 152 VSLTTREFEILKLLLENQGRVVSRERLLDTVWG-YDYIGDEKIVNTHI----KNIRKKLG 206 Query: 207 FDPVDSKRFLGYSID 221 D +++ R GY I+ Sbjct: 207 VDYIETMRGAGYKIE 221 >gi|170744192|ref|YP_001772847.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168198466|gb|ACA20413.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 221 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 4/162 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L RI A S VP++ ++ ++ + D G DD + KP E ARV A RR + Sbjct: 63 LRRIRAAGSTVPVLILTARDAVADRVRGLDLGADDYLLKPFAPAEFEARVRAQIRRGQGQ 122 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N G + + + GE L RRER +L LMA G+ V K ++ + ++G F Sbjct: 123 PNPVLRCGTLALDRSTGAVTLDGEPLALRRRERAVLTVLMAKAGQVVPKERLNNEVFG-F 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D+ V N +E +I++LRKKL+ K + + R LGY +D Sbjct: 182 DDEVAPNALELYIARLRKKLQPK--GPEIRTIRGLGYLLDAG 221 >gi|294814051|ref|ZP_06772694.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|326442455|ref|ZP_08217189.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326650|gb|EFG08293.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 226 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209 >gi|168182887|ref|ZP_02617551.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|182673991|gb|EDT85952.1| DNA-binding response regulator [Clostridium botulinum Bf] Length = 228 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 99/197 (50%), Gaps = 18/197 (9%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+GY G+ +E F S++ + + D+S GE E+ RIIR Sbjct: 21 LEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLMLPDIS---------GE---EVCRIIR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126 S V + ++ +L ++ + G D+ + KP RE+ ARV A++RRL N+ + Sbjct: 69 QSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTYNSTSNL 128 Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + G + + D R +V G+ + E IL L++N+GK +++ Q+ + I+G+ E Sbjct: 129 IFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIFGIDFEG 188 Query: 185 VEENVVESHISKLRKKL 201 + ++ HI +RKK+ Sbjct: 189 YDR-TIDVHIKNIRKKI 204 >gi|153813306|ref|ZP_01965974.1| hypothetical protein RUMOBE_03723 [Ruminococcus obeum ATCC 29174] gi|149830596|gb|EDM85687.1| hypothetical protein RUMOBE_03723 [Ruminococcus obeum ATCC 29174] Length = 222 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/231 (25%), Positives = 106/231 (45%), Gaps = 22/231 (9%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGK-GE 58 M ++D +++ I G S G NS E ++ L+ D+ ++ L G+ G Sbjct: 1 MIYCVEDEKNIRELLIYTLETTGFSARGMANSKELKDALKEEL-PDLILLDIMLPGEDGY 59 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +LE + +P+I ++ + + ++G DD + KP E +ARV A+ RR Sbjct: 60 SILERLKASSETQNIPVIMVTAKEAEYDKVRGLEAGADDYITKPFGMMEFVARVKAVLRR 119 Query: 119 ---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 LK + R G +V+ + E L R+E +L+YLM N+G + Sbjct: 120 CSRQEEDKELKCDDLRLSVGRHKVYW-------KEEKVELTRKEFELLQYLMENKGLVMT 172 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + QI ++G +D E V+ H+ LR+KL + +++ R +GY I Sbjct: 173 RNQILCHVWG-YDFDGETRTVDVHVRTLRQKLGE--AGNLIETVRGVGYRI 220 >gi|57650905|ref|YP_187163.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus COL] gi|151222475|ref|YP_001333297.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|81693861|sp|Q5HDJ4|HSSR_STAAC RecName: Full=Heme response regulator hssR gi|187609572|sp|A6QJK3|HSSR_STAAE RecName: Full=Heme response regulator hssR gi|57285091|gb|AAW37185.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus COL] gi|150375275|dbj|BAF68535.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. Newman] Length = 224 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 95/186 (51%), Gaps = 6/186 (3%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L R D++ ++ + G +L ++ +P+I ++ +L F SG DD Sbjct: 40 LLEKQRVDIAVVDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156 V KP +E++ R+ A+ RR +++N T G + + + +V + LP +E ++ Sbjct: 98 YVTKPFEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 157 Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 L +++A R K++ + QI I+G +D +E V+ HI +LR++L+ +++ R Sbjct: 158 L-FMLAARPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLKKLNATLTIETVRG 215 Query: 216 LGYSID 221 GY ++ Sbjct: 216 QGYKVE 221 >gi|52425301|ref|YP_088438.1| OmpR protein [Mannheimia succiniciproducens MBEL55E] gi|52307353|gb|AAU37853.1| OmpR protein [Mannheimia succiniciproducens MBEL55E] Length = 226 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 5/202 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D AL+ +G G S++ F + SA D ++ L G G + Sbjct: 8 ILLIEDDALIGNGIKVGLTKSGFSVDWFTDGKTGLQAIKSAPYDAVVLDLTLPGMDGMDI 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L+ R P++ ++ +L + G DD + KP E++AR+ A I RR Sbjct: 68 LQQWR--NEKIDTPVLILTARDTLNDRVTGLQRGADDYLCKPFALAEVIARLQALIRRRY 125 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N E ++ + R +QG+ PL RE +LE M N+ + ++++ I +Y Sbjct: 126 GQANPIVEHSLVKFDPNSRKVSLQGKDIPLTTREYNLLELFMMNKERVLSRSFIEEKLYN 185 Query: 180 LFDEAVEENVVESHISKLRKKL 201 +D+ V N +E HI LR+KL Sbjct: 186 -WDDEVSSNALEVHIHNLRQKL 206 >gi|332827589|gb|EGK00335.1| hypothetical protein HMPREF9455_03474 [Dysgonomonas gadei ATCC BAA-286] Length = 227 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 21/221 (9%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEW---LQSSAREDVSAIEAFLIGKGEKVLELP 64 + L + GY + ++GV S +EW L D+ IE + +K+ Sbjct: 18 KGLEETGYSVVLAENGVDARSLIS--EKEWSLILLDIMLPDIDGIELLQYTRYKKI---- 71 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LK-- 120 P++ IS + + D G DD + KP RE++A + A+ RR LK Sbjct: 72 -------NTPILVISALGDAEDKIRALDCGADDYLTKPFLLRELIAHINALTRRAGLKYD 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V+++ E +++F D E GE L +E ++L+ LM N+ K +++ Q+ ++G+ Sbjct: 125 VASDVLECDDLKLFKDRHRVERGGEEIKLTMQEFKLLKLLMENKDKVLSRAQLLDTVWGV 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVV+ +IS LR K+ + + + GY I+ Sbjct: 185 -NYDTNTNVVDVYISYLRNKIDTDGHVKLIKTVKGRGYMIE 224 >gi|297589562|ref|ZP_06948203.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|297578073|gb|EFH96786.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|312437222|gb|ADQ76293.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH60] Length = 233 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 95/186 (51%), Gaps = 6/186 (3%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L R D++ ++ + G +L ++ +P+I ++ +L F SG DD Sbjct: 49 LLEKQRVDIAVVDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 106 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156 V KP +E++ R+ A+ RR +++N T G + + + +V + LP +E ++ Sbjct: 107 YVTKPFEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 166 Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 L +++A R K++ + QI I+G +D +E V+ HI +LR++L+ +++ R Sbjct: 167 L-FMLAARPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLKKLNATLTIETVRG 224 Query: 216 LGYSID 221 GY ++ Sbjct: 225 QGYKVE 230 >gi|160878354|ref|YP_001557322.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427020|gb|ABX40583.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 226 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPL 149 D G +D + KP E+ AR+ ++ RR V N I + + GR V G + Sbjct: 91 LDIGANDYLAKPFAFEELEARIRSLLRRSFVQENSVLVWNEISLDTVGRTVSVSGIDVTM 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 ++E +LEY + N+ K +++ ++ ++ + ++ N V HI+ LRKKL+ LG+DP Sbjct: 151 TKKELALLEYFLLNQSKVISQEELMEHVWNMEADSFS-NAVRVHIASLRKKLKIALGYDP 209 Query: 210 VDSKRFLGY 218 + +K GY Sbjct: 210 IATKIGEGY 218 >gi|83718337|ref|YP_439100.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|167577524|ref|ZP_02370398.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] gi|167615672|ref|ZP_02384307.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] gi|257142209|ref|ZP_05590471.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|83652162|gb|ABC36226.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 219 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 85/162 (52%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+ R +RA S VP+I ++ + + + ++G DD + KP E+ ARV+A+ RR Sbjct: 60 LDFLRELRAGGSTVPVIILTALDQVASRIAGLNAGADDYLVKPFDLSELSARVSAVARRY 119 Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N + G + V + R G L E +LE L+ + G ++K+Q+ +Y Sbjct: 120 SGNPNPLVKLGELSVDTAARSVMRGGARIDLTASEWALLETLIQHPGMLLSKSQLEERLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE V N +E H+S+LRK KLG D +++ R LGY + Sbjct: 180 SFSDE-VGSNTIEVHVSRLRK----KLGADLIETVRGLGYRL 216 >gi|322833622|ref|YP_004213649.1| transcriptional regulator [Rahnella sp. Y9602] gi|321168823|gb|ADW74522.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 224 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D AL++ + G ++ + ++ D++ ++ L GE L Sbjct: 3 ILVIEDNALLRHHLSVQLREMGHQVDAAEDAKEADYFLHEHAPDIAIVDLGL--PGEDGL 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R R+H + +P++ ++ S Q + ++G DD V KP H E+LAR+ A+ RR Sbjct: 61 SLIRRWRSHQNNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVLARMQALMRRNS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ P ++ R+ V + L E I+E L+ N GK V+K + +Y Sbjct: 121 GLASQVITLQPFQIDLSRRELTVNEQPIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E + V+ + +LRKKL+ + D + + R GY D Sbjct: 181 -DAELRESHTVDVLMGRLRKKLQAEHPVDVITTVRGQGYRFD 221 >gi|239942340|ref|ZP_04694277.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 226 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R+ S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQLRSRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209 >gi|190570997|ref|YP_001975355.1| two component transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019514|ref|ZP_03335320.1| two component transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357269|emb|CAQ54693.1| two component transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994936|gb|EEB55578.1| two component transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|222825037|dbj|BAH22195.1| cell cycle transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 256 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 1/142 (0%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A +VP++ +S + G DD + KP H E+LAR+ AI RR K Sbjct: 67 LLRLRSAKIKVPVLILSCISAANHKAKGLGYGADDYLTKPFHKSELLARIKAIVRRTKGH 126 Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + + D R EV+G+ L +E ++E L +G + K + +Y Sbjct: 127 PESVIKIGNMNINFDHRIVEVKGKTVHLTNKEYSMIELLALRKGAVLTKEMFLNHLYNGL 186 Query: 182 DEAVEENVVESHISKLRKKLRN 203 DE + +V+ + KLRKKL + Sbjct: 187 DEPSDNKIVDVFMCKLRKKLES 208 >gi|209883402|ref|YP_002287259.1| FeuP protein [Oligotropha carboxidovorans OM5] gi|209871598|gb|ACI91394.1| FeuP protein [Oligotropha carboxidovorans OM5] Length = 221 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L R+ A P++ ++ + ++ ++G DD + KP E+LAR+ AI RR Sbjct: 63 LRRLREAGVTTPIVILTARDGWREKVEGINAGADDYLTKPFQMEELLARLGAITRRAAGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ + G + V + R + G L E R+L YL+ +RG+ +++ ++ ++ Sbjct: 123 ASAIIKAGELEVDTRARTAMLSGHQLALSAMEYRLLAYLLMHRGRTLSQGELLEHLHD-G 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E+ I++LRK KLGF +++ R GY I Sbjct: 182 DTERDGNAIEALIARLRK----KLGFPLIETHRGRGYCI 216 >gi|163747146|ref|ZP_02154502.1| transcriptional regulator CtrA [Oceanibulbus indolifex HEL-45] gi|161379707|gb|EDQ04120.1| transcriptional regulator CtrA [Oceanibulbus indolifex HEL-45] Length = 235 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 73/151 (48%), Gaps = 4/151 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL R+ R + P++ +S + + F G DD + KP H E++AR+ AI Sbjct: 59 GHDVLRQLRLARIDT--PILILSGADDTENKIRGFGFGADDYLTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + ETG + V D + V L +E ++LE L +G + K + Sbjct: 117 RRSKGHAQSVIETGQVAVNLDAKTVSVNDSPVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 +YG DE E +++ I KLRKKL G Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLSQATG 206 >gi|300702441|ref|YP_003744041.1| response regulator, chey family [Ralstonia solanacearum CFBP2957] gi|299070102|emb|CBJ41389.1| putative response regulator, CheY family [Ralstonia solanacearum CFBP2957] Length = 224 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 4/147 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPI 131 VP++ ++ + + +G DD + KP RE++AR+ + RR +N + G + Sbjct: 73 VPVMILTASGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNTPANAVELQCGDL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + R + G LP RE +LE LM G+ V+K + + ++GL D+A E +E Sbjct: 133 SYHTGSRTFALSGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFGLEDDASPE-AIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 +I +LRKKL + + + R LGY Sbjct: 192 IYIHRLRKKLEHSAA--TIVTLRGLGY 216 >gi|49475924|ref|YP_033965.1| cell cycle transcriptional regulator ctra [Bartonella henselae str. Houston-1] gi|49238732|emb|CAF27988.1| Cell cycle transcriptional regulator ctra [Bartonella henselae str. Houston-1] Length = 233 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 15/188 (7%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74 YI G++GV L +++ L D+S + + L L +I + P Sbjct: 28 YITDLGEEGVDLGKL--YDYDIILLDLNLPDMSGYDVL------RTLRLAKI-----KTP 74 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRV 133 ++ +S +++ + F G DD + KP H E++AR+ A+ RR K + + TG + V Sbjct: 75 VLILSGMNAIEDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSKGHAQSVIVTGDLIV 134 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D + EV G L +E ++LE L +G + K + +YG DE E +++ Sbjct: 135 NLDAKTVEVAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKIIDVF 193 Query: 194 ISKLRKKL 201 I KLRKKL Sbjct: 194 ICKLRKKL 201 >gi|296876734|ref|ZP_06900782.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] gi|296432236|gb|EFH18035.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] Length = 251 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 76/147 (51%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R KV+ N G + Sbjct: 98 TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKVNENTLNYGNL 157 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 +V V G+ L +E +L Y + N+ + KTQIF ++G FD +VVE Sbjct: 158 KVNLSTNSTYVDGKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVE 216 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + + R +GY Sbjct: 217 VYVSKIRKKLKGTDFVESLQTLRSVGY 243 >gi|302535864|ref|ZP_07288206.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444759|gb|EFL16575.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 226 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVAGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209 >gi|254471949|ref|ZP_05085350.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudovibrio sp. JE062] gi|211959151|gb|EEA94350.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudovibrio sp. JE062] Length = 231 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +RA S+ +P+I ++ + +G DD V KP E++ARV AI+R Sbjct: 61 IELCRRLRARSETERMPIIMLTARGEESERIRGLATGADDYVVKPFSIPELMARVRAIFR 120 Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R +V + ++G I + + G L E R+LE+LM+ G+ ++ Q+ Sbjct: 121 RALPEVVSTMLKSGDIELDRETHRVRRTGREIHLGPTEFRLLEFLMSAPGRVYSREQLLD 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK + DP+ + R GY+ + Sbjct: 181 GVWG-HDVYVDERTVDVHVGRLRKAINKGRMKDPIRTVRGAGYAFN 225 >gi|91206110|ref|YP_538465.1| transcriptional activator protein CzcR [Rickettsia bellii RML369-C] gi|157826457|ref|YP_001495521.1| transcriptional activator protein CzcR [Rickettsia bellii OSU 85-389] gi|91069654|gb|ABE05376.1| Transcriptional activator protein CzcR [Rickettsia bellii RML369-C] gi|157801761|gb|ABV78484.1| Transcriptional activator protein CzcR [Rickettsia bellii OSU 85-389] Length = 237 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A + P++ +S + F SG DD + KP E++AR+ AI RR S Sbjct: 63 LLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRR---S 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + + V D R E+ G+ L +E ILE L+ RG + K + +Y Sbjct: 120 KGHAASVFRFDKVSVNLDTRSVEIDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 DE E +++ I KLRKKL + G D +D+ GY + Sbjct: 180 SSLDEP-EMKIIDVFICKLRKKLSDAAGGKDYIDTVWGRGYML 221 >gi|297158401|gb|ADI08113.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 226 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +VS E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEEVSPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209 >gi|194291903|ref|YP_002007810.1| response regulator, ompr family [Cupriavidus taiwanensis LMG 19424] gi|193225807|emb|CAQ71753.1| putative response regulator, OmpR family [Cupriavidus taiwanensis LMG 19424] Length = 224 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 8/154 (5%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127 A P++ ++ S ++ D+G DD ++KP E+LAR+ A+ RR + + Sbjct: 69 AQVNAPVLILTARDSWTEKVEGIDAGADDYLSKPFRMEELLARIRALIRRAHGMPAPELQ 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 GP+R+ V G L E R+L+YLM + G V+KT + IY FD + Sbjct: 129 CGPVRMNPRAGTVSVDGAPVVLTAHEFRVLDYLMHHPGAIVSKTALTEHIYAQDFDR--D 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N +E + +LR+ KLG D +++ R GY + Sbjct: 187 SNTIEVFVGRLRR----KLGVDIIETVRGQGYRL 216 >gi|110634562|ref|YP_674770.1| two component transcriptional regulator / cell cycle transcriptional regulator CtrA [Mesorhizobium sp. BNC1] gi|110285546|gb|ABG63605.1| cell cycle transcriptional regulator CtrA [Chelativorans sp. BNC1] Length = 249 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 3/142 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 79 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIVRRSK 138 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G+ L +E ++LE L +G + K + +YG Sbjct: 139 GHAQSVITTGDLIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 198 Query: 180 LFDEAVEENVVESHISKLRKKL 201 DE E +++ I KLRKKL Sbjct: 199 GMDEP-ELKIIDVFICKLRKKL 219 >gi|302672243|ref|YP_003832203.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302396716|gb|ADL35621.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 231 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123 IR SQVP++ +S + + G DD + KP + + A++ AI RR ++ Sbjct: 73 IRKISQVPIVFLSSADDNMNIVMAMNMGADDFIAKPFDLQVLTAKIQAILRRSYGESIAV 132 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E +R+ D V L + E IL+ LM +GK V++ I ++G DE Sbjct: 133 HELEVKNVRLNLDDTSASVGDNRLDLTKNEYLILKTLMEQQGKVVSRETIMERLWGA-DE 191 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V++N + +++++RKKL D + +KR +GY + Sbjct: 192 FVDDNTLTVNVTRIRKKLDAAGAEDFIATKRGMGYIV 228 >gi|256823309|ref|YP_003147272.1| two component transcriptional regulator PhoB, winged helix family [Kangiella koreensis DSM 16069] gi|256796848|gb|ACV27504.1| two component transcriptional regulator PhoB, winged helix family [Kangiella koreensis DSM 16069] Length = 230 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 4/154 (2%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 + + VP+I ++ + ++G DD V KP RE+LARV A+ RR NN +E Sbjct: 73 QKYQDVPVIMLTARGEEDDRVQGLEAGADDYVVKPFSPRELLARVQAVLRRSGKGNNPSE 132 Query: 128 T---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 G I++ + G ++ GE L E +IL + M++ + ++ Q+ +++G Sbjct: 133 QISHGDIQLDTAGHRVQINGEEVHLGPTEYKILHFFMSHPERVYSRGQLLDSVWGQ-QVV 191 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VEE V+ HI +LRK L++ + V + R GY Sbjct: 192 VEERTVDVHIRRLRKALQDYNVENYVQTVRGSGY 225 >gi|163847395|ref|YP_001635439.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525241|ref|YP_002569712.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668684|gb|ABY35050.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449120|gb|ACM53386.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 226 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 87/177 (49%), Gaps = 29/177 (16%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ R IR +S +P+I +S LQ + G DD + KP E+LARV A+ RR Sbjct: 61 EVCRQIRRNSDIPIIFLSARHQLQDRVMGLQIGGDDYLVKPFEPSELLARVEAVLRRRNA 120 Query: 119 ------LKVSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 ++S P+ +F+DGR E+ PL E R+L YLM N G+ + Sbjct: 121 DVLNTSTRLSQGNITLDPVEHKVLFTDGR----VVELTPL---EFRLLYYLMKNSGRILN 173 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221 TQI S ++G +D E N+V +I +LR K+ DP V + R LGY + Sbjct: 174 VTQILSKVWG-YDYEGESNLVAVYIRRLRTKVEE----DPDHPRHVITVRNLGYKFE 225 >gi|329894345|ref|ZP_08270215.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [gamma proteobacterium IMCC3088] gi|328923141|gb|EGG30464.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [gamma proteobacterium IMCC3088] Length = 230 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 7/130 (5%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPL 149 G DD + KP E++AR+ AI+RRL E +R+ ++ G V L Sbjct: 98 GADDYLVKPFSSEELMARLEAIHRRLAPLGADFRTTLEAEDLRLDLITQEVRRAGRVIAL 157 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 RE R+LEYLM N GK V ++ + ++G FD + NV++ HIS+LR+K+ + Sbjct: 158 QPREYRLLEYLMRNAGKIVTRSMLLENVWGYHFDP--QTNVIDVHISRLRQKIDRDFDYP 215 Query: 209 PVDSKRFLGY 218 V + R GY Sbjct: 216 LVHTVRGAGY 225 >gi|229014220|ref|ZP_04171341.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048] gi|229076416|ref|ZP_04209380.1| Two-component response regulator vanRB [Bacillus cereus Rock4-18] gi|229135864|ref|ZP_04264632.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196] gi|229169751|ref|ZP_04297451.1| Two-component response regulator vanRB [Bacillus cereus AH621] gi|228613790|gb|EEK70915.1| Two-component response regulator vanRB [Bacillus cereus AH621] gi|228647604|gb|EEL03671.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196] gi|228706703|gb|EEL58912.1| Two-component response regulator vanRB [Bacillus cereus Rock4-18] gi|228747174|gb|EEL97056.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048] Length = 216 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 83/163 (50%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV A+ RR Sbjct: 58 ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 117 Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + + + S V G L +E I+ L+ NRGK ++++ + + ++ Sbjct: 118 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ + V+++HI LRKKL + + + +GY I+ Sbjct: 178 G-YEHYGDVRVIDTHIKNLRKKLE----IPYIKTVKGIGYKIE 215 >gi|182437802|ref|YP_001825521.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|239988805|ref|ZP_04709469.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|326778437|ref|ZP_08237702.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178466318|dbj|BAG20838.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658770|gb|EGE43616.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 226 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R+ S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQLRSRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209 >gi|22537145|ref|NP_687996.1| DNA-binding response regulator CiaR [Streptococcus agalactiae 2603V/R] gi|25011074|ref|NP_735469.1| DNA-binding response regulator CiaR [Streptococcus agalactiae NEM316] gi|76787511|ref|YP_329701.1| DNA-binding response regulator CiaR [Streptococcus agalactiae A909] gi|76797790|ref|ZP_00780056.1| Transcriptional regulatory protein ciaR [Streptococcus agalactiae 18RS21] gi|77405694|ref|ZP_00782781.1| DNA-binding response regulator CiaR [Streptococcus agalactiae H36B] gi|77409201|ref|ZP_00785911.1| DNA-binding response regulator CiaR [Streptococcus agalactiae COH1] gi|77411995|ref|ZP_00788324.1| DNA-binding response regulator CiaR [Streptococcus agalactiae CJB111] gi|77413624|ref|ZP_00789810.1| DNA-binding response regulator CiaR [Streptococcus agalactiae 515] gi|22534008|gb|AAM99868.1|AE014237_2 DNA-binding response regulator CiaR [Streptococcus agalactiae 2603V/R] gi|23095473|emb|CAD46679.1| Unknown [Streptococcus agalactiae NEM316] gi|76562568|gb|ABA45152.1| DNA-binding response regulator CiaR [Streptococcus agalactiae A909] gi|76586866|gb|EAO63358.1| Transcriptional regulatory protein ciaR [Streptococcus agalactiae 18RS21] gi|77160333|gb|EAO71458.1| DNA-binding response regulator CiaR [Streptococcus agalactiae 515] gi|77161951|gb|EAO72933.1| DNA-binding response regulator CiaR [Streptococcus agalactiae CJB111] gi|77172177|gb|EAO75336.1| DNA-binding response regulator CiaR [Streptococcus agalactiae COH1] gi|77175690|gb|EAO78472.1| DNA-binding response regulator CiaR [Streptococcus agalactiae H36B] gi|319745016|gb|EFV97344.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 226 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 FD G DD + KP + E+ R+ A+ +R K ++N G IRV V L Sbjct: 91 FDLGADDYLTKPFYLEELKMRIQALLKRSGKFNDNSLIYGDIRVDMSTNSTFVNQTEVEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + K+QIF I+G FD +VVE ++SK+RKKL+ L + Sbjct: 151 LGKEFDLLVYFLQNQNVILPKSQIFDRIWG-FDSDTTISVVEVYVSKVRKKLKGTLFSEN 209 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 210 LQTLRSVGY 218 >gi|332524383|ref|ZP_08400598.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332107707|gb|EGJ08931.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 229 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 4/131 (3%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 ++G DD + KP RE++ARV A+ RR + RA + G+ +G V L Sbjct: 97 LEAGADDYLPKPFSPRELVARVRALLRR--AAMPRATPQVFELDEPGQRIRYRGAVLALT 154 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDP 209 R E +L L+ RG+ +++ +F ++G EA + V++H+ LR KLR G DP Sbjct: 155 RLEYGLLRELILARGRILSREALFDRVWGTQAEAADRT-VDTHVKTLRAKLREVHAGADP 213 Query: 210 VDSKRFLGYSI 220 + + R LGY++ Sbjct: 214 IATHRGLGYTL 224 >gi|269124961|ref|YP_003298331.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309919|gb|ACY96293.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 226 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 18/171 (10%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRELRARSNVPVIMLTAKDSEVDKVVGLELGADDYVTKPFSTRELIARMRAVLRRRGD 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + E GP+R+ + V GE LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 AEEPPPSVLEAGPVRMDVERHVVTVDGEAVQLPLKEFELLEVLLRNAGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-------RFLGYSID 221 +G D + ++ HI +LR K+ +PV S R LGY + Sbjct: 182 WG-ADYVGDTKTLDVHIKRLRAKI------EPVPSSPRYIVTVRGLGYKFE 225 >gi|153939788|ref|YP_001390660.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152935684|gb|ABS41182.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] Length = 230 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 6/139 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123 IR S +P+I ++ S ++ D G DD + KP RE+++RV AI RR SN Sbjct: 67 IRKTSNIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAIIRR--TSNDCD 124 Query: 124 -NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N ++ I + + E G+ L + E ++L+Y M N K ++K QI ++ + Sbjct: 125 FNIIQSKDIVFYINEMKIEKHGKEIFLSKTELKLLQYFMKNYQKILSKEQIIENLWNIDG 184 Query: 183 EAVEENVVESHISKLRKKL 201 E + EN V ++ ++R+K+ Sbjct: 185 EFINENTVAVNVRRIREKI 203 >gi|54027160|ref|YP_121402.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54018668|dbj|BAD60038.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 229 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 17/167 (10%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL------- 119 +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 67 LRTRSGVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGAGDELDG 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E GP+R+ D V G+ LP +E +LEYL+ N G+ + + Q+ ++G Sbjct: 127 NGESGVLEAGPVRMDVDRHTVMVNGKPVTLPLKEFDLLEYLLRNSGRVLTRGQLIDRVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 D + ++ H+ K+LR+K+ DP + R LGY ++ Sbjct: 187 -ADYVGDTKTLDVHV----KRLRSKIEADPAKPEHLVTVRGLGYKLE 228 >gi|330721725|gb|EGG99721.1| two component transcriptional regulator2C winged helix family [gamma proteobacterium IMCC2047] Length = 219 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 8/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + + HS +P++ ++ L + DSG DD + KP E+ AR+ + RRL + Sbjct: 63 LKKARKKHSDLPILLLTARAELDDRITGLDSGADDYLAKPFEMAELFARLRVLERRLGTA 122 Query: 123 NNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ +E V D + V+ G L R+E +L+ LM N G+ ++ + +Y Sbjct: 123 HS-SEIVIHNVCLDCNNNSVKFNGTELELSRKEYMLLKSLMENAGRIQTRSTLERRLYS- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +DE V N +E H+ LRK KLG + + + R +GY I+ Sbjct: 181 WDEEVASNALEVHVHHLRK----KLGSNFIKTVRGVGYKIE 217 >gi|326938289|gb|AEA14185.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 223 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 3/149 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 71 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYR 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 131 GIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VE ++ LRKKL + + R +GY Sbjct: 190 VEVYVHHLRKKLEPSGYQKDIQTVRGIGY 218 >gi|163942751|ref|YP_001647635.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864948|gb|ABY46007.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 221 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 83/163 (50%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV A+ RR Sbjct: 63 ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 122 Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + + + S V G L +E I+ L+ NRGK ++++ + + ++ Sbjct: 123 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ + V+++HI LRKKL + + + +GY I+ Sbjct: 183 G-YEHYGDVRVIDTHIKNLRKKLE----IPYIKTVKGIGYKIE 220 >gi|75759474|ref|ZP_00739566.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493049|gb|EAO56173.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 232 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 80 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 139 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 140 GIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 198 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 199 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 227 >gi|228919426|ref|ZP_04082791.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840213|gb|EEM85489.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 228 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 76 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 135 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 136 GIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 194 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 195 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 223 >gi|228899255|ref|ZP_04063518.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228963662|ref|ZP_04124806.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228796010|gb|EEM43474.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228860286|gb|EEN04683.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 228 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 76 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 135 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 136 GIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 194 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 195 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 223 >gi|229542414|ref|ZP_04431474.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229326834|gb|EEN92509.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 225 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 88/167 (52%), Gaps = 3/167 (1%) Query: 57 GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G + +E+ R +R Q +I ++ ++ + +G DD + KP E++AR+ A+ Sbjct: 56 GLEGIEICRKLRRQGFQGGIIMVTARDAVDDVVAGLRAGADDYIVKPFAFDELVARIDAL 115 Query: 116 YRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR LK + + + + E G++ PL R+E ++ EY M N+ + + +I Sbjct: 116 GRRKLKTYQETITCAYLALHLESKQAEANGKMIPLTRQEYQLCEYFMRNKNLVLPREKII 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+GL DE + +N +++ + ++RKK+ + +++ R LGY ++ Sbjct: 176 EHIWGL-DEDISDNALDALVKRVRKKIDREGERSLIETVRGLGYRMN 221 >gi|13472497|ref|NP_104064.1| two-component transcriptional regulator [Mesorhizobium loti MAFF303099] gi|260462502|ref|ZP_05810709.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|319781794|ref|YP_004141270.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|14023243|dbj|BAB49850.1| two-component transcriptional regulator [Mesorhizobium loti MAFF303099] gi|259031698|gb|EEW32967.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|317167682|gb|ADV11220.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 231 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 74/142 (52%), Gaps = 3/142 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G+ L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 DE E +++ I KLRKKL Sbjct: 181 GMDEP-ELKIIDVFICKLRKKL 201 >gi|157825231|ref|YP_001492951.1| transcriptional activator protein CzcR [Rickettsia akari str. Hartford] gi|157799189|gb|ABV74443.1| Transcriptional activator protein CzcR [Rickettsia akari str. Hartford] Length = 237 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 13/165 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A + P++ +S ++ F SG DD + KP E++AR+ AI RR Sbjct: 63 LLRLRAAKIKTPILILSSLTDTDQKINGFYSGADDYLTKPFVREELIARIKAIVRR---- 118 Query: 123 NNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ I +F D R EV G+ L +E ILE L+ RG + K + Sbjct: 119 -SKGHAASIFMFDKVSVNLDTRTVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNH 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 +Y DE E +++ I KLRKKL + G D +D+ GY + Sbjct: 178 LYSSVDEP-EMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYML 221 >gi|319901144|ref|YP_004160872.1| two component transcriptional regulator, winged helix family [Bacteroides helcogenes P 36-108] gi|319416175|gb|ADV43286.1| two component transcriptional regulator, winged helix family [Bacteroides helcogenes P 36-108] Length = 230 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 104/218 (47%), Gaps = 17/218 (7%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66 R L ++ + ++ D+G+ E N + +W D+ ++ L G G ++L+ R Sbjct: 18 RGLEENDHAVIWTDNGI--EARNMITQRKW-------DLILLDIMLPGIDGLELLQYTR- 67 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125 R P++ IS + D G D+ + KP RE++A + A+ RR K++ N Sbjct: 68 -RKKVNAPILVISALSETNDRIKALDYGADNYLTKPFLFRELIAHINALTRRAKLNYNED 126 Query: 126 ---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 E +R+ D E G+ L +E ++L+ LM N+ + V +T++ ++G+ Sbjct: 127 MNILECNDLRLNIDKHQIERAGKEIRLTIQEFKLLKILMENKNRVVTRTELLDNVWGINC 186 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NVV+ +IS LR K+ + + + + GY I Sbjct: 187 DNT-TNVVDVYISYLRNKIDAEHDIKLIKTIKGRGYLI 223 >gi|228937808|ref|ZP_04100438.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970689|ref|ZP_04131331.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977266|ref|ZP_04137662.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228782405|gb|EEM30587.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228788991|gb|EEM36928.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821843|gb|EEM67841.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 228 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 3/149 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 76 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYR 135 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 136 GIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 194 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VE ++ LRKKL + + R +GY Sbjct: 195 VEVYVHHLRKKLEPSGYQKDIQTVRGIGY 223 >gi|126654044|ref|ZP_01725875.1| response regulator ArlR [Bacillus sp. B14905] gi|126589478|gb|EAZ83623.1| response regulator ArlR [Bacillus sp. B14905] Length = 247 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 30/205 (14%) Query: 15 YIALFGDDGVSLEGFN-SLEFEEWLQSSAREDVS--AIEAF------LIGKGEKVLELPR 65 +IA F + + EG++ ++ FE RE +S IEAF ++ G +E+ R Sbjct: 35 HIARFVELELQHEGYDVTVAFE------GREGLSLATIEAFDVLLLDVMLPGINGIEICR 88 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +R SQVP+I I+ ++ + D+G DD + KP E+LAR+ I RR + Sbjct: 89 RVRTQSQVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRR-ATTQEP 147 Query: 126 AETGPIRVFSDGRDPE---------VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 A + F RD E VQG L + E +L+ L+ ++ + + I ++ Sbjct: 148 ANSE----FLSLRDIEIDIAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTS 203 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++G +D +E NVV+ +I LR KL Sbjct: 204 VWG-YDTDIETNVVDVYIRHLRTKL 227 >gi|283471583|emb|CAQ50794.1| response regulator protein [Staphylococcus aureus subsp. aureus ST398] Length = 224 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 94/186 (50%), Gaps = 6/186 (3%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L R D++ ++ + G +L ++ +P+I ++ +L F SG DD Sbjct: 40 LLEKQRVDIAVVDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156 V KP +E++ R+ A+ RR + SN+ G + + + +V + LP +E ++ Sbjct: 98 YVTKPFEVKELIFRIRAVLRRYNIHSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 157 Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 L +++A R K++ + QI I+G +D +E V+ HI +LR++L+ +++ R Sbjct: 158 L-FMLAARPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLKKLNATLTIETVRG 215 Query: 216 LGYSID 221 GY ++ Sbjct: 216 QGYKVE 221 >gi|239626272|ref|ZP_04669303.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520502|gb|EEQ60368.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 226 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 74/144 (51%), Gaps = 2/144 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ + IR +SQVP+I ++ + L F GVD+ ++KP + ++ARV AI RR Sbjct: 65 EVLKTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRRSNV 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 VS G I + + G L +E +L Y + N+G +++ +I + ++ Sbjct: 125 VSTENMNVGGICIDKAAHQVTIDGREIELSYKEFELLSYFVENQGIALSREKILNNVWN- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR K+ K Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGEK 207 >gi|319405236|emb|CBI78841.1| cell cycle transcriptional regulator CtrA [Bartonella sp. AR 15-3] Length = 233 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 15/188 (7%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74 YI G++G+ L +++ L D+S + + L L +I + P Sbjct: 28 YITDLGEEGIDLGKL--YDYDIILLDLNLPDMSGYDVL------RTLRLEKI-----KTP 74 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRV 133 ++ +S ++ + F G DD + KP H E++AR+ A+ RR K + + TG + + Sbjct: 75 VLILSGMGDIKDKVRGFGFGADDYMTKPFHKDELIARIHAVVRRSKGHAQSIITTGDLTI 134 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D + EV G L +E ++LE L +G + K + +YG DE E +++ Sbjct: 135 NLDAKTVEVAGHPVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEP-ELKIIDVF 193 Query: 194 ISKLRKKL 201 I KLRKKL Sbjct: 194 ICKLRKKL 201 >gi|294509055|ref|YP_003565944.1| DNA-binding response regulator [Bacillus megaterium QM B1551] gi|294352359|gb|ADE72681.1| DNA-binding response regulator [Bacillus megaterium QM B1551] Length = 226 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 5/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 +L ++IR P++ +S S + F G DD + KP +E++ARV A RR + Sbjct: 62 DLCKVIREQIYCPILFLSAKHSEMDKVKGFTLGGDDYITKPFQVKELIARVEAHLRREQR 121 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + N+ G + + D + G+ L +E +ILE L N G+ +K QI+ I Sbjct: 122 DRVSTQNQRLLGNLTINYSQHDVLLDGKKIDLTSKEFKILELLTVNLGQIFSKEQIYEKI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G+ D + N + HI+ LR KL + + + + +GY ++ Sbjct: 182 WGI-DAMGDLNTIIVHINNLRAKLTSGMSTYHIKTVWGVGYKLE 224 >gi|152974825|ref|YP_001374342.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023577|gb|ABS21347.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 223 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 3/137 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S +P+I ++ ++ +G DD V KP E++AR+ A+ RR + Sbjct: 69 IRKTSDIPIIFLTAKGEEWNRVNGLRNGADDYVVKPFSPGELIARMEAVLRRYTKQGQQE 128 Query: 127 ET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E GPIR+ R E G++ L +E +L +L + G+ ++ Q+ ++G +D A Sbjct: 129 ELEFGPIRMNEKSRKAETNGKIISLTVKEFDLLYFLCQHHGQVFSREQLLEKVWG-YDYA 187 Query: 185 VEENVVESHISKLRKKL 201 V++H+ +R KL Sbjct: 188 GSTRTVDTHVKTMRLKL 204 >gi|157693907|ref|YP_001488369.1| response regulator [Bacillus pumilus SAFR-032] gi|157682665|gb|ABV63809.1| response regulator [Bacillus pumilus SAFR-032] Length = 228 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 74/144 (51%), Gaps = 3/144 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ + IR SQ+P++ ++ + + + G DD + KP RE+ AR+ RR Sbjct: 65 EVCQRIRQTSQIPILFLTARSYEEDRIKGLEIGADDYIMKPFSLRELAARIETTLRRIRG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L + +R + G + + DGR + E L RRE +L +L+ N+G+ ++ Q++ ++ Sbjct: 125 LSLKRSRIQFGDMEIDQDGRQVYILQEPINLTRREFDLLMFLLLNQGQVFSREQLYQKLW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLR 202 + V++HI LR KL+ Sbjct: 185 ESHSTSGSLRTVDTHIKTLRLKLK 208 >gi|318058490|ref|ZP_07977213.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318075596|ref|ZP_07982928.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] gi|333026125|ref|ZP_08454189.1| putative response regulator [Streptomyces sp. Tu6071] gi|332745977|gb|EGJ76418.1| putative response regulator [Streptomyces sp. Tu6071] Length = 223 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 5/144 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 59 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 119 PEEVTPTALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G D + ++ H+ +LR K+ Sbjct: 179 WG-ADYVGDTKTLDVHVKRLRAKI 201 >gi|228906317|ref|ZP_04070202.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228853340|gb|EEM98112.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 76 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 135 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 136 GIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 194 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 195 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 223 >gi|330830551|ref|YP_004393503.1| transcriptional regulatory protein PhoP [Aeromonas veronii B565] gi|328805687|gb|AEB50886.1| Transcriptional regulatory protein PhoP [Aeromonas veronii B565] Length = 229 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 3/146 (2%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIR 132 P+I ++ + Q ++ ++G DD + KP E+LAR+ A+ RR + + + G Sbjct: 79 PIIVLTARGNWQDKVEGLEAGADDYLVKPFQKDELLARLNALVRRSAGFISPKVKAGDYE 138 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + ++ + GEV L E ILEYLM N + V+K Q+ +YG D + N +E Sbjct: 139 LDLSRKELTIAGEVAVLTSFEYLILEYLMRNARQVVSKQQLLDQLYG--DGEGDPNTIEV 196 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218 +S+LRKKL + P+ + R GY Sbjct: 197 MVSRLRKKLDPEGTIQPISTIRRQGY 222 >gi|310779288|ref|YP_003967621.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309748611|gb|ADO83273.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 217 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 76/139 (54%), Gaps = 2/139 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I ++ + F+ D+ + KP + R ++AR+ AI+RR Sbjct: 63 VCREIRRESMVPVIMLTARSEENDQIFGFELEADEYITKPFNPRLLVARIKAIFRRAG-K 121 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ G I + R E++GE L +E +L Y + NRG +++ +I ++++G +D Sbjct: 122 PDKISRGDIEIDEGSRKVEIKGEAVELTSKEFEMLLYFVQNRGIALSREKILNSVWG-WD 180 Query: 183 EAVEENVVESHISKLRKKL 201 + V++H+ +LRKK+ Sbjct: 181 YFGDVRTVDTHVKRLRKKI 199 >gi|284039640|ref|YP_003389570.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283818933|gb|ADB40771.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 225 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 47 SAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH 105 +AI LI G EL R +RA P++ ++ + + FD+G D + KP Sbjct: 46 AAIITDLILPGLNGYELCRQLRAEGVSTPILMLTALDETEDRIQGFDAGADQYLAKPFQF 105 Query: 106 REILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV ++ +R + ++ G I + D + G+ L RE +LE+LM Sbjct: 106 AELLARVRSLTKRGTQVTMTAQMLRYGGIEINLDAKTVTRDGQPIELTAREFALLEFLMR 165 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 N+G+ ++K I ++ L FD NVVE +I+ LRKK+ GFD Sbjct: 166 NQGRVLSKPAIAEHVWDLNFDTGT--NVVEVYINYLRKKIDK--GFD 208 >gi|326201281|ref|ZP_08191153.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325988849|gb|EGD49673.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 226 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 8/147 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S VP+I IS ++ +D G DD V KP E++ARV+A RR ++ Sbjct: 62 EILKEVRKFSDVPVIVISAKDTIGLKIDLLKMGADDYVTKPFDLGEVVARVSANLRRSRI 121 Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + V D + V G+ L +E I+E L+ NR K K ++ I+ Sbjct: 122 KAQSEKILHYKDVAVDIDSKRIIVNGKELDLTAKEYGIMELLIKNRDKVFTKANLYETIW 181 Query: 179 GLFDEAV--EENVVESHISKLRKKLRN 203 EA ++N V++H+S LR KL+ Sbjct: 182 ---QEAYLGDDNAVKTHMSNLRSKLKT 205 >gi|254500884|ref|ZP_05113035.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] gi|222436955|gb|EEE43634.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] Length = 222 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 8/151 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIR 132 P+I ++ Q + D+G DD + KP E+ AR+ A+ RR VS + GP++ Sbjct: 74 PVILLTARSETQDRVKGLDAGADDYLVKPFEMEELAARIRALGRRNTAVSPSLVNVGPLK 133 Query: 133 VFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 F G G+V +PRRE +L L+ G+ ++K + +YG E +E V+E Sbjct: 134 -FDAGSMQLFDGDVALEVPRRELSLLSALIQANGRTLSKASLLDQLYGAGSE-TDEKVIE 191 Query: 192 SHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 ++S+LRK+L + FD + R +GYS++ Sbjct: 192 VYVSRLRKRLSS---FDINIQVHRGIGYSLN 219 >gi|170023956|ref|YP_001720461.1| DNA-binding transcriptional regulator PhoP [Yersinia pseudotuberculosis YPIII] gi|1617255|emb|CAA47148.1| phoP [Yersinia pseudotuberculosis] gi|49617497|gb|AAT67459.1| nonfunctional two-component system response regulator [Yersinia pseudotuberculosis] gi|169750490|gb|ACA68008.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] Length = 223 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 108/223 (48%), Gaps = 5/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ + G ++ + ++ D++ I+ L GE L Sbjct: 4 LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 L R R+H + +P++ ++ S Q + ++G DD V KP H E++AR+ A+ RR + Sbjct: 62 LIRRWRSHQENLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ E P ++ R+ V + L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQIIELPPFQIDLSRRELCVNQQQIKLTAFEYTIIEPLIRNAGKVVSKDTLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E E + ++ + +LRKKL + + + + R GY D N Sbjct: 181 DAELRESHTIDVLMGRLRKKLLAEHQGEVITTIRGQGYRFDVN 223 >gi|19749312|gb|AAL98682.1| Y4xI [Sinorhizobium fredii] gi|27965728|gb|AAO25539.1| Y4xi [Sinorhizobium fredii] Length = 226 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 7/208 (3%) Query: 19 FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIRAHS-QVPLI 76 GD G +++ +LE SA ++ +E L G G L+ R +R+ VP + Sbjct: 18 LGDGGFAVDVVGTLEQASSAFFSASYEILLLELVLPDGDG---LDWLRQLRSDGYSVPAV 74 Query: 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFS 135 +S L+ + F+SG DD + KP+ E++AR+ A+ RR +++ E G + Sbjct: 75 IMSRLDDLEKRISVFNSGADDFLRKPVSTDELIARMRALLRRSTQITCPIIEFGNLHFDP 134 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 GR V G + RRE ILE+L+ G+ V + ++ +Y F++ V N +E+ I Sbjct: 135 IGRQVSVDGHPLMIARRELCILEHLLNRAGRIVPRARLEDQLYS-FNDEVSGNALEAGIY 193 Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +LR L + + R +GY ++ Sbjct: 194 RLRGYLSRSGATLRIRTVRGIGYVLELT 221 >gi|331701554|ref|YP_004398513.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329128897|gb|AEB73450.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 228 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 11/185 (5%) Query: 27 EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+++ L LQ++ E+ I L+ +E+ R +R P+I ++ S Sbjct: 24 EGYDTQVELNGRTGLQAALDENFDVILLDLMLPELNGMEVARRLREKKNTPIIMMTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP-------IRVFSD 136 + + FD G DD + KP E+LAR+ A+ RR+++ N++ + + + + Sbjct: 84 VIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIQIENDQQKNNKKSVTFKDLTIEKE 143 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 R EV L +RE +L LM N +A+ + + ++G +D VE NVV+ +I Sbjct: 144 SRIVRRGDEVINLTKREYELLLTLMENVDVVLARDVLLTKVWG-YDSEVETNVVDVYIRY 202 Query: 197 LRKKL 201 LR K+ Sbjct: 203 LRNKI 207 >gi|83954575|ref|ZP_00963286.1| two component response regulator [Sulfitobacter sp. NAS-14.1] gi|83840859|gb|EAP80030.1| two component response regulator [Sulfitobacter sp. NAS-14.1] Length = 223 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 87/164 (53%), Gaps = 8/164 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ R P+I ++ + D+G DD + KP E+ AR+ A+ RR + Sbjct: 63 LSRLRRRGDGTPVILLTARAETSERVAGLDAGADDYLTKPFEMDELEARLRAMARRKNLE 122 Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPL--PRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R GP+ VF D + ++ + PL PR+E LE L+ RG+ V+K+Q+ + +YG Sbjct: 123 FAARDTLGPL-VF-DRTNRQLLKDEAPLAFPRKELATLECLLERRGRIVSKSQLITHVYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 A E++ +E H+S+LRK+L G + + R LGY ++ + Sbjct: 181 -TGAAQEDSAIEPHVSRLRKRL-EPFGI-RIKAARGLGYMLEVD 221 >gi|218674674|ref|ZP_03524343.1| two-component response regulator protein [Rhizobium etli GR56] Length = 222 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 8/143 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ ++ +++P+I ++ SL + DSG DD + KP E+ AR+ A+ RR Sbjct: 63 LKRLRQSGNKLPIIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRR---G 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +RA + G +R R V+GE L RE +LE L+ G V+K + +++ Sbjct: 120 QDRASSEITVGNLRFSGGTRQFFVEGEPLQLTPREYAVLEQLVMKLGNTVSKAALSESVF 179 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G FD+ + + +E ++ +LRKKL Sbjct: 180 G-FDDEADPSAIEIYVHRLRKKL 201 >gi|218895625|ref|YP_002444036.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218544951|gb|ACK97345.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 223 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 71 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 131 GIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 189 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218 >gi|262342066|gb|ACY54553.1| putative transcriptional regulatory protein PhoP [Pseudomonas syringae pv. syringae] Length = 194 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 7/188 (3%) Query: 35 EEWLQSSAR--EDVSAIEAFLIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFF 91 EE L A+ D++ I+ L G G L+L R +R + P++ ++ + Q ++ Sbjct: 3 EEALYQVAQFNHDLAVIDLGLPGIGG--LDLIRQLRTLGKAFPILILTARGNWQDKVEGL 60 Query: 92 DSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 +G DD V KP E+ AR+ A+ RR + GP+ + + + + + L Sbjct: 61 AAGADDYVVKPFQFEELEARLNALLRRSSGFIQSTITAGPLLLDLNRKHAALAEQPLALT 120 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 E RILEYLM + + V K ++ +Y DE + NV+E + +LR+KL + + F P+ Sbjct: 121 AYEYRILEYLMLHHQQVVPKERLMEQLYPDDDER-DPNVIEVLVGRLRRKLDSSVAFKPI 179 Query: 211 DSKRFLGY 218 ++ R +GY Sbjct: 180 ETVRGMGY 187 >gi|120608754|ref|YP_968432.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120587218|gb|ABM30658.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] Length = 237 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 7/175 (4%) Query: 48 AIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106 A A +G G VL R RA + P++ ++ + + D+G DD + KP Sbjct: 58 AAHASPVGSGLAVL---RAARARGDRTPVLVLTARDRTEERIAGLDAGADDYLGKPFDLA 114 Query: 107 EILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 E+ AR+ A+ RR + +++R G + + R + G+ F LP RE +L LM G+ Sbjct: 115 EVEARLRALVRRTQGTDDRTSAGTLVLDRRVRRFTLHGQPFDLPAREFEVLWELMTPPGR 174 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V+K + + FD+ + +N +E+ IS+LRKKL+ + + R LGY ++ Sbjct: 175 VVSKRSLSDKLSD-FDDMLGDNALEAFISRLRKKLQGSGA--GIRTLRGLGYMLE 226 >gi|322387460|ref|ZP_08061070.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321141989|gb|EFX37484.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 218 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 82/161 (50%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ IR SQVP++ ++ + + + F + D + KP + RV AI++R Sbjct: 60 LEVLSEIRKSSQVPVLMLTAFQDEEYKMSAFAALADGYLEKPFSLSLLKVRVDAIFKRYY 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +V D +V G+ + +E IL+YL+ N G+ + ++QI A++ + Sbjct: 120 DTGRIFTYRDTQVDFDSYSAKVAGQEVAVNAKELEILDYLVKNEGRALTRSQIIDAVWKM 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I K+LR KL D + + R +GY ++ Sbjct: 180 TDEVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216 >gi|253730033|ref|ZP_04864198.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734222|ref|ZP_04868387.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|297209820|ref|ZP_06926216.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910832|ref|ZP_07128282.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304379557|ref|ZP_07362290.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|253726246|gb|EES94975.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727917|gb|EES96646.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|296885493|gb|EFH24430.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887812|gb|EFK83007.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304341733|gb|EFM07639.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320139067|gb|EFW30949.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142555|gb|EFW34364.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] Length = 233 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 95/186 (51%), Gaps = 6/186 (3%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L R D++ ++ + G +L ++ +P+I ++ +L F SG DD Sbjct: 49 LLEKQRVDIAVVDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 106 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156 V KP +E++ R+ A+ RR +++N T G + + + +V + LP +E ++ Sbjct: 107 YVTKPFEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 166 Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 L +++A R K++ + QI I+G +D +E V+ HI +LR++L+ +++ R Sbjct: 167 L-FMLAARPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLKKLNATLTIETVRG 224 Query: 216 LGYSID 221 GY ++ Sbjct: 225 QGYKVE 230 >gi|296115872|ref|ZP_06834496.1| two component response regulator KdpE [Gluconacetobacter hansenii ATCC 23769] gi|295977560|gb|EFG84314.1| two component response regulator KdpE [Gluconacetobacter hansenii ATCC 23769] Length = 223 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 10/202 (4%) Query: 22 DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIRAHSQVPLIGISD 80 DG +++ F +LE ++ D ++ L G G +L R R S + ++ + Sbjct: 23 DGHAVDWFMTLEDARAAIATVDYDFMLLDLGLPDGNGRDLLRDIR--RTSSDIAILITTA 80 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSDGR 138 + + G DD + KP E++AR+AA+ RR R G I + + R Sbjct: 81 EDQISDRIAGLSEGADDYIVKPYDLNELVARIAAVARRYAAPRQRGHCRIGEIAIDRESR 140 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 G V L RE I+E L N G+ ++ QI + +Y L D+ VE N VE IS+LR Sbjct: 141 SVSRDGRVLDLTAREWAIMELLSRNPGRIYSRQQIDTVLYAL-DQDVESNTVEVFISRLR 199 Query: 199 KKLRNKLGFDPVDSKRFLGYSI 220 +K+ N + + R GY + Sbjct: 200 RKVGNT----TIRTIRGRGYCL 217 >gi|153814038|ref|ZP_01966706.1| hypothetical protein RUMTOR_00246 [Ruminococcus torques ATCC 27756] gi|317502379|ref|ZP_07960544.1| DNA-binding response regulator DltR [Lachnospiraceae bacterium 8_1_57FAA] gi|331087969|ref|ZP_08336892.1| hypothetical protein HMPREF1025_00475 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848434|gb|EDK25352.1| hypothetical protein RUMTOR_00246 [Ruminococcus torques ATCC 27756] gi|316896189|gb|EFV18295.1| DNA-binding response regulator DltR [Lachnospiraceae bacterium 8_1_57FAA] gi|330409280|gb|EGG88729.1| hypothetical protein HMPREF1025_00475 [Lachnospiraceae bacterium 3_1_46FAA] Length = 224 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 2/150 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLKVSNNRAETGPI 131 +P++ ++ + ++ D+G +D + KP H +E+LAR+ AI R + +N++ + G + Sbjct: 73 IPILLLTAKSEVDDKVEGLDAGANDYLAKPFHSKELLARIRAITRAQTAQANSKLKMGNV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + F L +E ++LE LM N + ++ + I+G +D E NVV Sbjct: 133 TLDRAAFELSTSKGSFRLANKEFQMLELLMCNPHQLISSERFLEKIWG-YDSEAEINVVW 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +IS LRKKL + + R GYS++ Sbjct: 192 VYISYLRKKLSALHADIQIKATRNAGYSLE 221 >gi|295110688|emb|CBL24641.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 222 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 8/224 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGK-GE 58 M ++D +++ I G S +G N+ E L+ D+ ++ L G+ G Sbjct: 1 MIYCVEDEKNIRELLIYTLETTGFSAKGMANAKELRIALKEEL-PDLILLDIMLPGEDGY 59 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +LE ++ R +P+I ++ + + ++G DD + KP E +ARV A+ RR Sbjct: 60 SILESLKLSRDTRGIPVIMVTAKEAEYDKVKGLEAGADDYITKPFGMMEFVARVKAVLRR 119 Query: 119 LKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E TG + + + L R+E +L+YLM N+G +++ QI Sbjct: 120 CSKQEDDKELRTGDLSLSVGRHKVRWKDTSVELTRKEFELLQYLMENKGLVMSRNQILCH 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D E V+ H+ LR+KL + +++ R +GY I Sbjct: 180 VWG-YDFDGETRTVDVHVRTLRQKLGE--AGNLIETVRGVGYRI 220 >gi|91976474|ref|YP_569133.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91682930|gb|ABE39232.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB5] Length = 224 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 8/130 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 FD+G DD V KP H E+LAR+ A+ RR + + GP+ + + V+G L Sbjct: 91 FDAGADDYVAKPFHLEEVLARIRALLRRSAGHAQSELTCGPVALDTRTGRVSVRGHPVKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V++T++ +Y FD + N +E + ++RK KL D Sbjct: 151 TSHEYRLLAYLMHHSGRVVSRTELVEHLYDQDFDR--DSNTIEVFVGRIRK----KLDVD 204 Query: 209 PVDSKRFLGY 218 + + R LGY Sbjct: 205 IIQTVRGLGY 214 >gi|229009996|ref|ZP_04167211.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229131506|ref|ZP_04260397.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229165510|ref|ZP_04293290.1| Two-component response regulator [Bacillus cereus AH621] gi|228617958|gb|EEK75003.1| Two-component response regulator [Bacillus cereus AH621] gi|228651953|gb|EEL07899.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228751278|gb|EEM01089.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 76 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 135 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 136 GIELFGKDKDIQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 194 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 195 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 223 >gi|119512472|ref|ZP_01631553.1| two-component system response regulator [Nodularia spumigena CCY9414] gi|119462876|gb|EAW43832.1| two-component system response regulator [Nodularia spumigena CCY9414] Length = 230 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 17/200 (8%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L ++GY DG + F + D+ ++ L GK LE+ + + Sbjct: 18 RVLKREGYSVDMAYDGATGSEF---------AAGGTYDLLILDWMLPGK--TGLEICQEL 66 Query: 68 RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R + P++ ++ +L ++ D+G DD + KP RE+LARV A+ RR ++ Sbjct: 67 RRQGKATPVLFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRRAGSPSHET 126 Query: 127 ETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 TG + V D E QG + L ++E ++L+Y M N G + QI ++ Sbjct: 127 TTGRLTVADLELDSENQVAYRQGRIIELSQKESQLLQYFMENTGHLLTHAQILQNLWQQD 186 Query: 182 DEAVEENVVESHISKLRKKL 201 E NV+ + I LR+K+ Sbjct: 187 HEQPNSNVIAALIRLLRRKI 206 >gi|304310969|ref|YP_003810567.1| Probable transcriptional regulatory protein [gamma proteobacterium HdN1] gi|301796702|emb|CBL44914.1| Probable transcriptional regulatory protein [gamma proteobacterium HdN1] Length = 224 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 2/149 (1%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132 P++ ++ S Q + + G DD V KP E++AR A+ RR ++ + GPI Sbjct: 74 PVMVLTARSSWQDKVAGLEIGADDYVVKPFQMEEVVARANALVRRAAGITQSSIRLGPIE 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + ++ + + E L E R+LEYLM + + ++K + IY D + N +E Sbjct: 134 LDTNKKQVRLHEEPLDLTSYEYRVLEYLMMHPEELISKAVLTEHIYAQ-DFERDSNTIEV 192 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I +LRKKL + P+++ R +GY ++ Sbjct: 193 FIGRLRKKLDPDNQWKPIETVRGMGYRMN 221 >gi|13474480|ref|NP_106048.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14025233|dbj|BAB51834.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 224 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 2/163 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ + +PR+ A + P++ ++ +D D G DD + KP E+LAR+ A+ Sbjct: 57 GDGLSLVPRLRSAANTTPVLVLTAKGDTSDKVDGLDMGADDYLAKPFAFEELLARLRALL 116 Query: 117 RRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR ++ G + + R+ + GE LPRRE +LE LM G+ V + + Sbjct: 117 RRPAPLQSQFIRAGHLVLDVGHREAAIGGEPLSLPRRELLVLEALMRRTGRMVQREALME 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 A++GL DE ++ N +++H+S+LR+KL + ++ R +GY Sbjct: 177 AVFGLDDE-IQSNALDTHVSRLRRKLADADAGVTINGIRGVGY 218 >gi|322806233|emb|CBZ03801.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 221 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 19/199 (9%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQ 85 +L A + + A+E F G + ++ LP+I IR S VP+I ++ + Sbjct: 27 YLVEVATDGLIAVEMFRRGNFDLIILDVMLPKIDGFVVCEIIRKESSVPIIMLTALGEEE 86 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEV 142 + F+ VDD + KP ++ RV A+ RR L+ +N+ I ++ V Sbjct: 87 DEMKGFELKVDDYITKPFSISLLIKRVEAVLRRANGLEENNSTLTFEEITIYPSNYKTLV 146 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + L +E +ILE L++N G+ ++ + + I+G +D + V+++HI K LR Sbjct: 147 NNKEIELTYKEFQILEILISNVGRVFSRESLLNQIWG-YDYFGDTRVIDTHI----KNLR 201 Query: 203 NKLGFDPVDSKRFLGYSID 221 KL D + + R +GY I+ Sbjct: 202 QKLNIDYIKTIRGVGYKIE 220 >gi|169828289|ref|YP_001698447.1| response regulator ArlR [Lysinibacillus sphaericus C3-41] gi|168992777|gb|ACA40317.1| response regulator ArlR [Lysinibacillus sphaericus C3-41] Length = 247 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 99/207 (47%), Gaps = 23/207 (11%) Query: 10 LVKD-GYIALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65 LV+D +IA F + + EG++ + E E L + + + ++ G +E+ R Sbjct: 29 LVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATTDAFDVLLLDVMLPGINGIEICR 88 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------- 118 IR SQVP+I I+ ++ + D+G DD + KP E+LAR+ I RR Sbjct: 89 RIRTQSQVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRATTQEPA 148 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 L + + + VF VQG L + E +L+ L+ ++ + + I Sbjct: 149 NSECLSLRDIEIDIAAYEVF-------VQGNKLDLTKTEYDLLKLLIEHKNRVCTREHIL 201 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++++G +D +E NVV+ +I LR KL Sbjct: 202 TSVWG-YDTDIETNVVDVYIRHLRSKL 227 >gi|157964137|ref|YP_001498961.1| transcriptional activator protein CzcR [Rickettsia massiliae MTU5] gi|157843913|gb|ABV84414.1| Transcriptional activator protein CzcR [Rickettsia massiliae MTU5] Length = 243 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A + P++ +S + F SG DD + KP E++AR+ AI RR S Sbjct: 69 LLRLRAAKIKTPILILSSLTDTDQKITGFSSGADDYLTKPFVREELIARIKAIVRR---S 125 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + + + D R EV G+ L +E ILE L+ RG + K + +Y Sbjct: 126 KGHAASVFRFDKVSINLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLY 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 DE E +++ I KLRKKL + G D +D+ GY + Sbjct: 186 SSVDEP-EMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYML 227 >gi|118588295|ref|ZP_01545704.1| two-component transcriptional regulator [Stappia aggregata IAM 12614] gi|118439001|gb|EAV45633.1| two-component transcriptional regulator [Stappia aggregata IAM 12614] Length = 243 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 3/142 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 74 EVLRTLRVSKVKTPILILSGNAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 133 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG ++V D + EV G+ L +E ++LE L +G + K + +YG Sbjct: 134 GHAQSVIVTGDLKVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 193 Query: 180 LFDEAVEENVVESHISKLRKKL 201 DE E +++ I KLRKKL Sbjct: 194 GMDEP-ELKIIDVFICKLRKKL 214 >gi|254503130|ref|ZP_05115281.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] gi|222439201|gb|EEE45880.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] Length = 230 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ + + P++ +S ++ + G DD + KP H E++AR+ AI Sbjct: 59 GYEVLRTLRVSKV--KTPILILSGNAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIV 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + TG ++V D + EV G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHAQSVIVTGDLKVNLDTKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +YG DE E +++ I KLRKKL Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201 >gi|297172289|gb|ADI23266.1| response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [uncultured actinobacterium HF0770_13M05] Length = 224 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 9/179 (5%) Query: 29 FNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGISDYPS 83 F S E +Q + R D+ I+ L G L L + +R + ++P+I ++ Sbjct: 24 FESPSAEAAMQILTERRTDLVIIDWML--PGMDGLNLTKTLRNRADTQKIPIIMLTARSD 81 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEV 142 + FDSGVDD + KP RE++ARV A+ RR + + E+ + + + ++ Sbjct: 82 EADAIQGFDSGVDDYITKPFSPRELIARVNALLRRSTDGAGSLIESNGMSLNTHNHTLQI 141 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 GE L R +L+YLM N + +++ Q+ +G VEE V+ +I +LRKKL Sbjct: 142 NGENLYLKPRVYGLLQYLMKNPNRILSRNQLLDGAWG-RSVYVEERTVDVYIVRLRKKL 199 >gi|187935631|ref|YP_001885604.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187723784|gb|ACD25005.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 226 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 4/139 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSN 123 +RA S VP+I IS + +D G DD + KP E++AR+ RR K + N Sbjct: 67 VRAFSDVPIIIISAKDMVGVKVDLLKLGADDYITKPFDIDEVIARIETNLRRYKKDTIGN 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 I + +D + V+G+ L +E ILE LM N+ + +K ++ I+ + Sbjct: 127 MELTYKDIVLKADSKSVTVKGQELNLTVKEYNILELLMKNKNRVFSKANLYEFIWE-SEY 185 Query: 184 AVEENVVESHISKLRKKLR 202 ++ +++HIS LR KL+ Sbjct: 186 LGDDKTIKTHISNLRSKLK 204 >gi|89902445|ref|YP_524916.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89347182|gb|ABD71385.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 223 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 3/160 (1%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L + + +RA + +P++ ++ S Q + ++G DD + KP + E+ ARV A+ RR Sbjct: 60 LTVVQTLRAEGRTLPILILTARGSWQDKVQGLEAGADDYLVKPFEYPELAARVKALLRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 LK +++ G +R+ G+ + L E R+LEYL+ R + V K ++ +Y Sbjct: 120 LKATSDVLTLGALRIDFSGQSARLHDVPLQLTTFEYRVLEYLVRERARVVPKQELSDYLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E I +LR+KL P+++ R GY Sbjct: 180 P-HDEDRDSNVLEVLIGRLRRKLDPDGTLLPIETLRGRGY 218 >gi|302023870|ref|ZP_07249081.1| response regulator protein [Streptococcus suis 05HAS68] gi|330832913|ref|YP_004401738.1| response regulator [Streptococcus suis ST3] gi|319758204|gb|ADV70146.1| response regulator [Streptococcus suis JS14] gi|329307136|gb|AEB81552.1| response regulator [Streptococcus suis ST3] Length = 223 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ + SL+ F+ G DD + KP + E+ R+ A+ +R K + N G + Sbjct: 73 TPVLITTAKESLEDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLTFGDV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V V GE L +E +L Y + N+ + KTQIF I+G FD +VVE Sbjct: 133 TVDLSTNMTMVNGEEVELLGKEFDLLVYFLQNQNVILPKTQIFDRIWG-FDSDTTISVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + + R +GY Sbjct: 192 VYVSKIRKKLKGTTFGENLQTLRSVGY 218 >gi|255526422|ref|ZP_05393334.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186394|ref|ZP_06854797.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509866|gb|EET86194.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048841|gb|EFG88272.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 223 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 10/166 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +IR S VP+I ++ Q + FD DD ++KP + +L RV A+ RR S Sbjct: 63 VCEMIRKESHVPIIILTALDDDQNQIKGFDLMADDYISKPFSPQILLKRVEAVLRRFNES 122 Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I++ + V + L +E +L L+ N+G + + I + + Sbjct: 123 FANLDNTVVAYKDIKLDKNAAKAFVASKELELTAKEFELLNMLIENKGIVLTREVILNKL 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G +D +E VV++HI K LR KLG D + + R +GY ++ N Sbjct: 183 WG-YDFYGDERVVDTHI----KNLRRKLGVDYIQTIRKVGYKLEGN 223 >gi|225017308|ref|ZP_03706500.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum DSM 5476] gi|224949925|gb|EEG31134.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum DSM 5476] Length = 238 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 92/194 (47%), Gaps = 25/194 (12%) Query: 27 EGFNSLEFE---EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF++L+ E + L+ RE V A+ L+ G LE+ + IR G + P Sbjct: 25 EGFSTLQAETGEQALKLLGRERVDAVILDLMLPGIDGLEVLKNIRVTP-----GTKNLPV 79 Query: 84 LQTTL--DFFDS------GVDDVVNKPIHHREILARVAAIYRRL--------KVSNNRAE 127 L T + FD G DD + KP RE++ARV A+ RR K N + Sbjct: 80 LMLTAKSEEFDRVIGLELGADDYLCKPFFVRELVARVKAVLRRAEAPGEPGAKKDNRFLK 139 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 GPI + R + +GE+ L +E +L N GK + + +I + I+G +D E Sbjct: 140 IGPIEIDEIKRTVKRRGELLELTLKEFDLLRLFAQNPGKVITRDEILTKIWG-YDYTGET 198 Query: 188 NVVESHISKLRKKL 201 V+ HI +LRKK+ Sbjct: 199 RTVDVHIRQLRKKI 212 >gi|190572473|ref|YP_001970318.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190010395|emb|CAQ44003.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 221 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 27/192 (14%) Query: 35 EEWLQSSAREDVSAIEAFLIG----KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDF 90 +E LQ +A ED+ + IG +G +VLE +R SQVP+I ++ + Sbjct: 30 QEGLQLAASEDMDLV-ILDIGLPDMEGHEVLEQ---LRQWSQVPVIMLTVRAGEAEKVRA 85 Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEV 142 D+G +D V KP +E++ARV A+ R V ++ G VF DG R+ + Sbjct: 86 LDTGANDYVTKPFGTQELMARVRALLRTRSVPSD----GTPPVFDDGHLHVDLVRREVAL 141 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK-LRKKL 201 GE L R+E +L L+ N G+ V + QI I+G + ++H + L KL Sbjct: 142 DGEPVALTRKEYALLSLLLRNAGRVVTQPQILQEIWGPTHQH------DTHYLRILVGKL 195 Query: 202 RNKLGFDPVDSK 213 R+KLG +DS+ Sbjct: 196 RHKLGDSALDSR 207 >gi|229154275|ref|ZP_04282395.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228629099|gb|EEK85806.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 229 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 77 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 136 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 137 GIELFGKDKDVQVDGQGMKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 195 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 196 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224 >gi|223985682|ref|ZP_03635730.1| hypothetical protein HOLDEFILI_03036 [Holdemania filiformis DSM 12042] gi|223962373|gb|EEF66837.1| hypothetical protein HOLDEFILI_03036 [Holdemania filiformis DSM 12042] Length = 223 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 4/138 (2%) Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQ 143 + L+ F++GVDD + KP RE+LAR+ A +R+ K S E G + + R+ V Sbjct: 86 EDILEAFEAGVDDYITKPFSPRELLARIQAHVKRIVKTSRRVLEMGGLTMDLGSREVSVN 145 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 G+ L ++E +LEYL+ N +++ I + I+ FD + +V+ HI KLR KL+ Sbjct: 146 GQPVSLTKKEFELLEYLLRNPQIVLSRDNILNEIWD-FDYDGDTRIVDVHIFKLRNKLQG 204 Query: 204 KLGFDPVDSKRFLGYSID 221 G + S R +GY ++ Sbjct: 205 S-GV-KIASLRGIGYKLE 220 >gi|167624938|ref|YP_001675232.1| two component transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167354960|gb|ABZ77573.1| two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 229 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 12/153 (7%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TG 129 P++ ++ S Q ++ D+G DD + KP H E++AR+ A+ RR S +A G Sbjct: 74 PILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR---SAGKASPIITNG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P + + + GE L E ++ EYLM + G+ +KT + IY D ++ NV Sbjct: 131 PFSLNTSSLEITKSGETITLSGSEYKLFEYLMLHIGEVKSKTVLTEHIYDQ-DFDLDSNV 189 Query: 190 VESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220 +E I +LRKKL N+LG +++ R GY + Sbjct: 190 IEVFIRRLRKKLDPDNQLGL--IETLRGQGYRL 220 >gi|150017333|ref|YP_001309587.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903798|gb|ABR34631.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 225 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 102/214 (47%), Gaps = 15/214 (7%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L+K+GY DG+ E N L+ +E + I + ++ EL + IR Sbjct: 20 VLLKNGYKTTGAKDGI--EALNVLD---------KEYIDLIISDIMMPNMDGFELIKSIR 68 Query: 69 -AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 A +P++ I+ Q F G+DD + KPI E++ RV A+ RR ++ + R + Sbjct: 69 DAQFNLPILMITAKERFQDKQRGFLLGIDDYMVKPIDVNEMVLRVGALLRRAQIISERKQ 128 Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + G + D GE LP++E IL L++ + + ++ +GL D + Sbjct: 129 SVGDTMLEYDSLSVYQNGEATVLPQKEFYILYKLISYPNRIFTRQELMDEFWGL-DSETD 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+ HI++LR + +N + FD + + R LGY + Sbjct: 188 IRTVDVHINRLRDRFKNNIDFDIL-TVRGLGYKV 220 >gi|296446454|ref|ZP_06888398.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296256089|gb|EFH03172.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 247 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ R +RA +P+I ++ + G DD V KP E++ARV A+ R Sbjct: 77 LEICRRLRARDDTRTMPVIMLTARGDENERVRGLSVGADDYVVKPFSTPELMARVHALLR 136 Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + R G I + + R + G L E R+LEYLM G+ ++ Q+ Sbjct: 137 RARPERVATRLVAGDIDLDRETRRVKRAGREIHLGPTEFRLLEYLMEKPGRVFSRAQLLD 196 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++GL E ++E V+ H+ +LRK + DP+ + R GYS D Sbjct: 197 SVWGLSAE-IDERTVDVHVGRLRKAIIRGREKDPIRTVRGTGYSFD 241 >gi|291549314|emb|CBL25576.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 217 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 75/143 (52%), Gaps = 1/143 (0%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + L + ++ + ++P I ++ + L FD+G DD V KP + +L R+ + +R K Sbjct: 59 INLYQELQKNGRIPAIFLTAKDDEKDMLKAFDTGADDYVVKPFSIKVLLKRIEVVLKR-K 117 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + N G + ++SD + V L +E ++LEY + N+ + + K I I+G+ Sbjct: 118 SNENIFMCGQVMLYSDRKQVFVGETEISLTLKEYQLLEYFIMNQNQVLTKEMIMENIWGI 177 Query: 181 FDEAVEENVVESHISKLRKKLRN 203 E ++ N + IS+L+KKL + Sbjct: 178 DSEFIDPNTISVMISRLKKKLND 200 >gi|229099488|ref|ZP_04230416.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29] gi|229105646|ref|ZP_04236279.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28] gi|229118506|ref|ZP_04247860.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3] gi|228665076|gb|EEL20564.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3] gi|228677782|gb|EEL32026.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28] gi|228683784|gb|EEL37734.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29] Length = 216 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 83/163 (50%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV A+ RR Sbjct: 58 ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 117 Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + + + S V G L +E I+ L+ NRGK ++++ + + ++ Sbjct: 118 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ + V+++HI LRKKL + + + +GY I+ Sbjct: 178 G-YEHFGDVRVIDTHIKNLRKKLE----IPYIKTVKGIGYKIE 215 >gi|209809156|ref|YP_002264694.1| putative two-component response regulator [Aliivibrio salmonicida LFI1238] gi|208010718|emb|CAQ81108.1| putative two-component response regulator [Aliivibrio salmonicida LFI1238] Length = 228 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 73/133 (54%), Gaps = 3/133 (2%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 SG DD + KP E+ AR+ + RR +K S++ R+ ++ E +G + L Sbjct: 93 SGADDYLVKPFSFDELHARILTVGRRGIVKNSDDDVNLAGFRLDLAKKEFEFEGTLVELT 152 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 + E +I+E L ++ + + I + + G FD ++ +N +ESH+S +RKK++ G P+ Sbjct: 153 KNEYKIIECLFLSKNQVMTTENISNYVVGSFD-SLSKNTIESHLSSVRKKVKLLGGEVPI 211 Query: 211 DSKRFLGYSIDWN 223 +KR GY +D N Sbjct: 212 KNKRGFGYYLDRN 224 >gi|163746910|ref|ZP_02154267.1| two component response regulator [Oceanibulbus indolifex HEL-45] gi|161380024|gb|EDQ04436.1| two component response regulator [Oceanibulbus indolifex HEL-45] Length = 223 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 4/162 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ R P+I ++ + D+G DD + KP E+ AR+ A+ RR + Sbjct: 63 LARLRRRGDGTPVILLTARAETSERVAGLDAGADDYLTKPFEMDELEARLRAMARRKNLE 122 Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R GP+ R + PR+E LE L+ RG+ V+K+Q+ + +YG Sbjct: 123 FAARDALGPLIFDRTNRQLLKDEQPLAFPRKELATLECLLERRGRIVSKSQLITHVYGTG 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E E++ +E H+S+LRK+L G + + R LGY ++ + Sbjct: 183 AEQ-EDSAIEPHVSRLRKRL-EPFGIR-IKAARGLGYMLEVD 221 >gi|86358186|ref|YP_470078.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86282288|gb|ABC91351.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 223 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 14/169 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE + +P + R P+I ++ + ++ D G DD + KP E++AR+ A+ Sbjct: 57 GEGLRFIPELRRTGRDTPIIVLTALNEPKQRVEGLDLGADDYLGKPFLVEELMARLRAVL 116 Query: 117 RR------LKVSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 RR LK++ R P+ + + G P LPRRE +L L + K V Sbjct: 117 RRQPNLSELKITAGRMVIDPLHLSVTVGDTP------LDLPRRELLVLAALAKRKEKTVL 170 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ + +A+Y ++E ++ N +++HIS+LRK+L + + + R +GY Sbjct: 171 RSTLEAAVYN-YEEKIQSNALDAHISRLRKRLTDAGAEVSIHNIRGVGY 218 >gi|163938495|ref|YP_001643379.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163860692|gb|ABY41751.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 223 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 71 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 131 GIELFGKDKDIQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVWG-FDSDTTVAI 189 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218 >gi|300774982|ref|ZP_07084845.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300506797|gb|EFK37932.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 224 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 8/147 (5%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 ++L +IIR P++ +S S + D G DD ++KP H E+++R+ A+ RR Sbjct: 60 MQLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKALTRRN 119 Query: 120 KVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K+S + + G I + +D + E ++ +LM N+ K +++TQI Sbjct: 120 KLSYKKEDQYLSCGNITIDTDLHKVTQNDKEIEFSPTEYKLFTFLMENKNKVLSRTQILH 179 Query: 176 AIYGL-FDEAVEENVVESHISKLRKKL 201 ++G+ FD NVV+ +IS +R K+ Sbjct: 180 NVWGIDFDNTT--NVVDVYISYIRNKI 204 >gi|225016621|ref|ZP_03705813.1| hypothetical protein CLOSTMETH_00528 [Clostridium methylpentosum DSM 5476] gi|224950585|gb|EEG31794.1| hypothetical protein CLOSTMETH_00528 [Clostridium methylpentosum DSM 5476] Length = 213 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 106/214 (49%), Gaps = 14/214 (6%) Query: 11 VKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66 +++ + + D G +++G ++LE + RE + I A ++ EL + Sbjct: 1 MRELFCTVLADGGYHAIPAVDGMDALEIMD------REYIDLIVADIMMPNMNGYELTKS 54 Query: 67 IR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +R A+ +P++ ++ + F +G DD + KPI+ E++ RV A+ RR K+S+ + Sbjct: 55 LREANYDLPILMVTAKDQFEDMQKAFRTGTDDYMIKPININELVLRVEALLRRAKISSEK 114 Query: 126 A-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 G + D GE LP++E +L L++ K + Q+ I+G+F E Sbjct: 115 KIVVGRTVLDYDALTVTRNGEESILPQKEFYLLYKLLSYPNKIFTRQQLMDEIWGMFSET 174 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E V +HI++LR + + F+ V + R LGY Sbjct: 175 -DERTVNTHINRLRDRFSDCKDFEIV-TVRGLGY 206 >gi|222087616|ref|YP_002546153.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221725064|gb|ACM28220.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 222 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 12/161 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + ++VP+I ++ SL + DSG DD + KP E+ AR+ A RR Sbjct: 63 LKRLRQGGNKVPVIILTANASLDGRITGLDSGADDYLAKPFEIAELEARIRAAVRR---G 119 Query: 123 NNRA----ETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++RA G + VF G R + GE L RE +LE+L+ G V KT + ++ Sbjct: 120 HDRAAPEIAVGDL-VFDGGTRQFSLGGETLALTPREHAVLEHLVMKVGTTVTKTALSESV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +G FD+ + + +E ++ ++RKKL + + R LGY Sbjct: 179 FG-FDDLADTSAIEIYVHRVRKKLEGS--AVQIATLRGLGY 216 >gi|117618787|ref|YP_857713.1| DNA-binding response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560194|gb|ABK37142.1| DNA-binding response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 229 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/235 (25%), Positives = 109/235 (46%), Gaps = 37/235 (15%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV- 60 +L++D ++ DG + G +++ WLQ + A + K E+ Sbjct: 3 ILLVEDDVMLGDGMVDALRSSGYTVD---------WLQQ-------GLPALSVLKSEEFA 46 Query: 61 -----LELP---------RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106 L LP ++ R +P++ ++ +L + D+G DD + KP + Sbjct: 47 ALILDLNLPDIDGISLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQ 106 Query: 107 EILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 E+ AR+ A+ RR K E G ++++ + + +GE L E ++L+ L+ G Sbjct: 107 ELNARLRALVRRSKGQAQAVLEYGELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSG 166 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++K Q+ ++YG +DE E N VE HI LRKK + D + + R +GY + Sbjct: 167 RVLSKDQLQQSLYG-WDEGAESNAVEVHIHHLRKKFYS----DLIRNIRGVGYIV 216 >gi|146281237|ref|YP_001171390.1| two-component response regulator [Pseudomonas stutzeri A1501] gi|145569442|gb|ABP78548.1| probable two-component response regulator [Pseudomonas stutzeri A1501] gi|327479394|gb|AEA82704.1| two-component response regulator [Pseudomonas stutzeri DSM 4166] Length = 221 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 104/220 (47%), Gaps = 10/220 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +L++D + D +A G + + E+ ++ D+ ++ L GK G +V Sbjct: 3 LLLVEDNVPLADELVASLSRQGYATDWLTDGRDAEYQGATEPYDLIILDLGLPGKPGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R A P++ ++ S +D +G DD + KP H E+L R+ A+ RR Sbjct: 63 LHAWRA--AGVTTPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELLLRIQALLRRAH 120 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N+ + G + + + G+ L E R+L Y M + G+ ++KTQ+ +Y Sbjct: 121 GLANQPMLQAGGLELDESRQCCRKDGQDIELTAGEFRLLRYFMLHPGQLLSKTQLTEHLY 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E + NV+E H++ +LR KLG + ++++R GY Sbjct: 181 DGETER-DSNVIEVHVN----RLRGKLGRELIETRRGQGY 215 >gi|157827976|ref|YP_001494218.1| transcriptional activator protein czcR [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932668|ref|YP_001649457.1| cell cycle transcriptional regulator [Rickettsia rickettsii str. Iowa] gi|157800457|gb|ABV75710.1| transcriptional activator protein czcR [Rickettsia rickettsii str. 'Sheila Smith'] gi|165907755|gb|ABY72051.1| cell cycle transcriptional regulator [Rickettsia rickettsii str. Iowa] Length = 237 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A + P++ +S + F SG DD + KP E++AR+ AI RR S Sbjct: 63 LLRLRAAKIKTPILILSSLTDTYQKITDFSSGADDYLTKPFVREELIARIKAIVRR---S 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + + + D R EV+G+ L +E ILE L+ RG + K + +Y Sbjct: 120 KGHAASVFRFDKVSINLDTRSVEVEGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 DE E +++ I KLRKKL + G D +D+ GY + Sbjct: 180 SSVDEP-EMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYML 221 >gi|220932165|ref|YP_002509073.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] gi|219993475|gb|ACL70078.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] Length = 227 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 12/148 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR Q P++ ++ + + ++ F G DD + KP RE+LAR+ AI RR Sbjct: 63 EVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRR--- 119 Query: 122 SNNRAETGPIRVFSDGR---DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 SN +AE I V+ DGR P V G L R E IL L+ N G+ + Q+ Sbjct: 120 SNQKAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 + GL + + +++HI +RKKL Sbjct: 180 AKKVMGLEYKGYDR-TIDAHIKNIRKKL 206 >gi|319898558|ref|YP_004158651.1| two-component system regulatory protein [Bartonella clarridgeiae 73] gi|319402522|emb|CBI76065.1| two-component system regulatory protein [Bartonella clarridgeiae 73] Length = 222 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 6/131 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H E++AR+ A+ RR + N G + + + V G++ L Sbjct: 91 IDAGADDYVVKPFHLEEVMARLRALIRRSAGHATNTLSCGEVLLDTKTSRVFVDGQLIKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 E R+L YLM + K V++T++ +Y D + N +E I +LRK KLG D Sbjct: 151 TSYEFRLLAYLMHHCDKVVSRTELIEHLYDQ-DFNKDSNTIEVFIRRLRK----KLGVDS 205 Query: 210 VDSKRFLGYSI 220 +++ R LGY I Sbjct: 206 IETVRGLGYRI 216 >gi|312143607|ref|YP_003995053.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] gi|311904258|gb|ADQ14699.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] Length = 225 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 16/156 (10%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GEKV + IR SQ+P+I ++ S + +D F+ G DD + KP RE+ AR+ A+ Sbjct: 59 GEKVCQK---IRQSSQIPIIMLTAKSSEENKIDGFNYGTDDYITKPFSPRELKARIKAVL 115 Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR SN + + G I+++ + + + L E +IL L+ N + +++ Q Sbjct: 116 RRSNDSNKASIITLKDGNIKIYPEEMVVKQDNDNCDLTSTEFKILMELINNARQVLSREQ 175 Query: 173 IFSAIYGL----FDEAVEENVVESHISKLRKKLRNK 204 + + + GL FD +++HI +RKKL+ K Sbjct: 176 LANKVMGLEFSGFDRT-----IDTHIKNIRKKLKLK 206 >gi|254719962|ref|ZP_05181773.1| DNA-binding response regulator [Brucella sp. 83/13] gi|265984972|ref|ZP_06097707.1| two component transcriptional regulator [Brucella sp. 83/13] gi|306837250|ref|ZP_07470137.1| DNA-binding response regulator [Brucella sp. NF 2653] gi|264663564|gb|EEZ33825.1| two component transcriptional regulator [Brucella sp. 83/13] gi|306407654|gb|EFM63846.1| DNA-binding response regulator [Brucella sp. NF 2653] Length = 225 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +LI+D ++ +G ++ + L+ SAR D+ ++ L G+G Sbjct: 3 IILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYVESARYDLVLLDLMLPDGQG--- 59 Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R +R P+I ++ + + ++G DD + KP E+ AR+ A+ RR Sbjct: 60 LSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRY 119 Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N E G +++ + G L RE +LE + + G+ ++K Q+ +Y Sbjct: 120 SGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD VE N +E H+S+LRK KLG +++ R +GY + Sbjct: 180 S-FDTEVESNTMEVHVSRLRK----KLGHAIIETVRGIGYRL 216 >gi|219848680|ref|YP_002463113.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542939|gb|ACL24677.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 226 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 86/173 (49%), Gaps = 21/173 (12%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S+VP+I +S LQ + G DD + KP E+LARV A+ RR Sbjct: 61 DVCRQIRRSSEVPIIFLSARSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRRRNA 120 Query: 122 ----SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 ++ R G I +F+DGR E+ PL E R+L YLM N G+ + Sbjct: 121 DVLNTSTRLSQGDITLDPVEHKVIFTDGRTVELT----PL---EFRLLYYLMKNAGRILN 173 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 +QI S ++G +D E N+V +I +LR K+ N V + R LGY + Sbjct: 174 VSQILSKVWG-YDYEGESNLVAVYIRRLRTKIEENPNNPRHVITVRNLGYKFE 225 >gi|117618398|ref|YP_858477.1| two-component system, regulatory protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559805|gb|ABK36753.1| two-component system, regulatory protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 218 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 79/151 (52%), Gaps = 8/151 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPI 131 P++ ++ L ++ ++G DD + KP E++ARV A+ RR +++ E G + Sbjct: 73 TPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVHALVRRAAGNASSILEIGGV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190 R+ +G L E R+L YLM +RGK V+++++ IY FD + N V Sbjct: 133 RLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYAQDFDR--DSNTV 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E I ++RKK + D +++ R LGY I+ Sbjct: 191 EVFIGRIRKKTHS----DLIETVRGLGYRIN 217 >gi|289167540|ref|YP_003445809.1| response regulator [Streptococcus mitis B6] gi|288907107|emb|CBJ21941.1| response regulator [Streptococcus mitis B6] Length = 218 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/219 (23%), Positives = 105/219 (47%), Gaps = 6/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++G D G E + + +E L+ + +V+ + + LE Sbjct: 4 LIVEDEEMIREGVSDYLTDCG--YETIEAADGQEALEKFSSYEVALVLLDIQMPKLNGLE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR SQVP++ ++ + + + F S D + KP + RV AI++R + Sbjct: 62 VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYDT 121 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +V + + GE + +E IL+YL+ N G+ + ++QI A++ D Sbjct: 122 GRVFSYKDTKVDFESYSASLSGEEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKATD 181 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E + V++ +I K+LR KL D + + R +GY ++ Sbjct: 182 EVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216 >gi|297544230|ref|YP_003676532.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842005|gb|ADH60521.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 223 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 5/161 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + IR S+VP++ I+ L F+ G DD V KP +E++ARV AI R Sbjct: 64 LLKTIREKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAILARTSGE 123 Query: 123 N--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + E I + R+ V GE L +E +L+ L+ N+GK V++ + + ++G Sbjct: 124 SEVEKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + V++HI +LR+KL K + + +GY +D Sbjct: 183 YDFYGDLRTVDTHIKQLREKLGEKRKL--IKTVWGIGYKLD 221 >gi|218289377|ref|ZP_03493611.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218240483|gb|EED07664.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 235 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 103/217 (47%), Gaps = 21/217 (9%) Query: 6 DDRALVKD--GYIALFGDDGVSLEGFNSLEF----EEWLQSSAREDVSAIEAF------- 52 D+RA++ D L DD S+ F LEF E + +AR+ V AI Sbjct: 4 DNRAVLYDPSKVRVLVVDDEPSIVKF--LEFGLRREGYAVDTARDGVEAIAKARESMPHV 61 Query: 53 ----LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108 ++ G E+ R++++ V +I ++ ++ + G DD V KP E+ Sbjct: 62 CILDVMMPGPDGFEVCRMLKSMGNVAVILLTARDAIDDRVKGLVGGADDYVVKPFSFEEL 121 Query: 109 LARVAAIYR-RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 LAR+ A R + R E GP + ++ +GE L E +L YL+ N G Sbjct: 122 LARIHARVRNQFPSLLKRQEMGPFVIDDARKEISFRGETLKLSSTEYELLRYLLQNHGLV 181 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 ++K QI ++G +D ++N+VE +IS LR+KL ++ Sbjct: 182 LSKAQILDHVWG-YDFNGQDNIVEVYISALREKLGDR 217 >gi|186471004|ref|YP_001862322.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184197313|gb|ACC75276.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 220 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 94/171 (54%), Gaps = 18/171 (10%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G ++L+ R R H+ P++ ++ ++ + ++G DD + KP E++AR A+ Sbjct: 59 GTELLDWIRKRRDHT--PVLVMTARDTVADRVSGLNAGADDYLGKPFDLTELVARCRALV 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPE----VQG-EVFPLPRRERRILEYLMANRGKRVAK 170 RR + S + E G + V DPE ++G E L RE +L L+AN+G+ +++ Sbjct: 117 RRSQGRSTDTIEYGDLLV-----DPERLTVMRGSERIALSSRECALLVELLANQGRPLSR 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ ++YG ++E +E N +E HIS LRK KLG + + R +GY ++ Sbjct: 172 ARLQDSLYG-WNEEIESNAIEVHISNLRK----KLGAQLIRTIRGVGYVVE 217 >gi|307153326|ref|YP_003888710.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] gi|306983554|gb|ADN15435.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 804 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 73/134 (54%), Gaps = 5/134 (3%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD + KP + +E+LARV A+ RR +S+ + GP+ + QG++ L Sbjct: 91 LDAGADDYLVKPFNIQELLARVRALLRRGGLSSTPLLQWGPLDLNPSSCQVSYQGQLLHL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E ILE + NR + +++ + ++ FDE+ EN V + I LR+KLR G P Sbjct: 151 TAKEYGILELFLRNRNRIFSQSALIEHLWS-FDESPTENAVRTQIKSLRQKLRGA-GASP 208 Query: 210 --VDSKRFLGYSID 221 +++ LGY ++ Sbjct: 209 NLIETVYGLGYRLN 222 >gi|194364065|ref|YP_002026675.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194346869|gb|ACF49992.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 237 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 27/192 (14%) Query: 35 EEWLQSSAREDVSAIEAFLIG----KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDF 90 +E LQ +A ED+ + IG +G +VLE +R SQVP+I ++ + Sbjct: 46 QEGLQLAASEDMDLV-ILDIGLPDMEGHEVLEQ---LRQWSQVPVIMLTVRAGETEKVRA 101 Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEV 142 D+G +D V KP +E++ARV A+ R V ++ G VF DG R+ + Sbjct: 102 LDTGANDYVTKPFGTQELMARVRALLRTRSVPSD----GTPPVFDDGHLHVDLVRREVAL 157 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK-LRKKL 201 GE L R+E +L L+ N G+ V + QI I+G + ++H + L KL Sbjct: 158 DGEPVALTRKEYALLSLLLRNAGRVVTQPQILQEIWGPTHQH------DTHYLRILVGKL 211 Query: 202 RNKLGFDPVDSK 213 R+KLG +DS+ Sbjct: 212 RHKLGDSALDSR 223 >gi|323483866|ref|ZP_08089243.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323692869|ref|ZP_08107094.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323402820|gb|EGA95141.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323503044|gb|EGB18881.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 225 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 94/187 (50%), Gaps = 4/187 (2%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSG 94 E L+ E + I + ++ G EL R +R + +P++ I+ + + F +G Sbjct: 36 EALELLDSEYIDLIISDIMMPGMDGYELIRTLRGNGYSLPILIITAKERFEDKQEGFQAG 95 Query: 95 VDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRE 153 DD + KPI E++ RV A+ +R +++ + R G + D V GE LP++E Sbjct: 96 TDDYMVKPIDVNEMVLRVGALLKRARIATDRRIICGKTTLDYDALTVTVDGEETLLPQKE 155 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +L LM+ K + Q+ I+G+ D +E V+ HI++LR++ R+ F + + Sbjct: 156 FYLLYKLMSYPNKIFTRQQLMDEIWGM-DSTSDERTVDVHINRLRERFRDCDDF-LIMTV 213 Query: 214 RFLGYSI 220 R LGY + Sbjct: 214 RGLGYKV 220 >gi|154252621|ref|YP_001413445.1| two component transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156571|gb|ABS63788.1| two component transcriptional regulator, winged helix family [Parvibaculum lavamentivorans DS-1] Length = 235 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 4/153 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL+ R+ + + P++ +S ++ + G DD + KP H E++AR+ A+ Sbjct: 59 GYEVLKSLRVGKITT--PILILSGLAGIENKVRGLGFGADDYMTKPFHKDELVARIHAVV 116 Query: 117 RRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + TG + V D + EV+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSVINTGKLTVNLDTKTVEVENNRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 +YG DE E +++ I KLRKKL G D Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKLAASTGGD 208 >gi|296284705|ref|ZP_06862703.1| two-component response regulator [Citromicrobium bathyomarinum JL354] Length = 225 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 10/151 (6%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133 P++ ++ S + D+G DD + KP E++AR+ A+ RR N +E V Sbjct: 74 PVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRRAS-GNTSSELTAGDV 132 Query: 134 FSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190 D R V G+ L +E ++L YLM ++GK V++T++ IY FD + N + Sbjct: 133 RLDTRSGRVTRGGDPVKLTAQEYKLLSYLMHHKGKVVSRTELIEHIYDQDFDR--DSNTI 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++++RK KLG + + + R LGYS+D Sbjct: 191 EVFVTRIRK----KLGAEVITTIRGLGYSLD 217 >gi|254473206|ref|ZP_05086604.1| two component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] gi|211957927|gb|EEA93129.1| two component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] Length = 229 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ + + P++ +S ++ + G DD + KP H E++AR+ AI Sbjct: 59 GYEVLRTLRVSKV--KTPILILSGLAGIEDKVRGLGFGADDYMTKPFHKDELIARIHAIV 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + TG + V D + EV G+ L +E ++LE L +G + K + Sbjct: 117 RRSKGHAQSVIVTGDLTVNLDTKTVEVAGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +YG DE E +++ I KLRKKL Sbjct: 177 HLYGGMDEP-ELKIIDVFICKLRKKL 201 >gi|163815855|ref|ZP_02207225.1| hypothetical protein COPEUT_02034 [Coprococcus eutactus ATCC 27759] gi|158448665|gb|EDP25660.1| hypothetical protein COPEUT_02034 [Coprococcus eutactus ATCC 27759] gi|295093939|emb|CBK83030.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 222 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 1/164 (0%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G ++ R I+ S VP++ ++ L+ L + G D+ + KP +LARVA + Sbjct: 53 GRSGFDICREIKRRSSVPVLVLTSRDQLKDELHALELGADEFLTKPCRRERLLARVANVL 112 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +R + N E + + + G LP+ + RI E LM + G V+K ++ A Sbjct: 113 KRYEGRQNLIEGEGFLLDTQTYTLYIDGRSAVLPQNQGRIFETLMTSGGDVVSKEKLCEA 172 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G E ++EN ++ ++++L+KK+ + + R +GY I Sbjct: 173 VWGT-SEYIDENALQVNLTRLKKKMAGLDMKAKIIAVRGVGYKI 215 >gi|146318749|ref|YP_001198461.1| response regulator [Streptococcus suis 05ZYH33] gi|146320952|ref|YP_001200663.1| response regulator [Streptococcus suis 98HAH33] gi|223932354|ref|ZP_03624357.1| two component transcriptional regulator, winged helix family [Streptococcus suis 89/1591] gi|253751848|ref|YP_003024989.1| response regulator protein [Streptococcus suis SC84] gi|253753671|ref|YP_003026812.1| response regulator protein [Streptococcus suis P1/7] gi|253755449|ref|YP_003028589.1| response regulator protein [Streptococcus suis BM407] gi|145689555|gb|ABP90061.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus suis 05ZYH33] gi|145691758|gb|ABP92263.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus suis 98HAH33] gi|223899035|gb|EEF65393.1| two component transcriptional regulator, winged helix family [Streptococcus suis 89/1591] gi|251816137|emb|CAZ51761.1| response regulator protein [Streptococcus suis SC84] gi|251817913|emb|CAZ55689.1| response regulator protein [Streptococcus suis BM407] gi|251819917|emb|CAR45990.1| response regulator protein [Streptococcus suis P1/7] Length = 224 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 67/129 (51%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K + N G + V V GE L Sbjct: 92 FELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLTFGDVTVDLSTNMTMVNGEEVEL 151 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + KTQIF I+G FD +VVE ++SK+RKKL+ + Sbjct: 152 LGKEFDLLVYFLQNQNVILPKTQIFDRIWG-FDSDTTISVVEVYVSKIRKKLKGTTFGEN 210 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 211 LQTLRSVGY 219 >gi|227530485|ref|ZP_03960534.1| response regulator [Lactobacillus vaginalis ATCC 49540] gi|227349590|gb|EEJ39881.1| response regulator [Lactobacillus vaginalis ATCC 49540] Length = 228 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 11/215 (5%) Query: 16 IALFGDDGVSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 +A F + + EG+ + L+ LQ++ +D I L+ +E+ R +R Sbjct: 13 LAKFVEMELKHEGYETDVELDGRAGLQAALNQDFDLILLDLMLPELNGIEVARRVRELKN 72 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SNNRAETG 129 P+I ++ S+ + FD G DD + KP E+LARV A+ RR+ + SN +T Sbjct: 73 TPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARVRALLRRINIEDSSNKEHQTT 132 Query: 130 ----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + + + R EV L +RE +L LM N +++ ++ S ++G +D V Sbjct: 133 VQYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKELLSKVWG-YDSKV 191 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E NVV+ +I LR K+ + + R GY I Sbjct: 192 ETNVVDVYIRYLRNKIDRPGEKSYIQTVRGTGYVI 226 >gi|260589879|ref|ZP_05855792.1| regulatory protein VanR [Blautia hansenii DSM 20583] gi|260539686|gb|EEX20255.1| regulatory protein VanR [Blautia hansenii DSM 20583] Length = 243 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 5/193 (2%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD 89 N +E E L S + + GEK+L + + ++ +P+I IS + ++ Sbjct: 52 NGIEAIEALSSKKYDLMLLDLMLPDLPGEKILF--HLKKHNNSIPVIVISAKNQPEIRIN 109 Query: 90 FFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFP 148 SG DD + KP +H E+LAR+ ++ RR S IR+ D V Sbjct: 110 LLRSGADDYITKPFYHEEVLARIESVLRRCSESPQTEYSFKDIRINVDDHKVLVNNTELS 169 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L E +L+ L+ + + K ++ I+G D ++N + HISKLRKKL + Sbjct: 170 LTTTEYNLLQLLIKHPKQTFTKESLYQLIWGK-DYISDDNTLNVHISKLRKKLEHIGNQA 228 Query: 209 P-VDSKRFLGYSI 220 P +D+ +GY + Sbjct: 229 PYIDTVWGIGYKL 241 >gi|302559955|ref|ZP_07312297.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] gi|302477573|gb|EFL40666.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] Length = 226 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209 >gi|328884011|emb|CCA57250.1| Phosphate regulon transcriptional regulatory protein PhoB [Streptomyces venezuelae ATCC 10712] Length = 226 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVAGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209 >gi|282860511|ref|ZP_06269577.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282564247|gb|EFB69783.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|320009413|gb|ADW04263.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 226 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQLRVRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209 >gi|15673657|ref|NP_267831.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|281492256|ref|YP_003354236.1| Two-component system response regulator [Lactococcus lactis subsp. lactis KF147] gi|12724689|gb|AAK05773.1|AE006398_4 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|281375927|gb|ADA65421.1| Two-component system response regulator [Lactococcus lactis subsp. lactis KF147] gi|326407140|gb|ADZ64211.1| Two-component system response regulator [Lactococcus lactis subsp. lactis CV56] Length = 225 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 79/148 (53%), Gaps = 3/148 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET-GP 130 P++ ++ SL + FD G DD + KP + E+ AR+ A+ +R K+ ++ T G Sbjct: 76 TPVLIMTAKESLDDKMHGFDIGADDYLTKPFYLDELKARIQALLKRTGKLEDSNGLTYGN 135 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 IR+ + V + L +E ++ YLM N+ + K QIF I+G +D VV Sbjct: 136 IRLNLSNKSTLVDDQPVDLIGKEFDLVVYLMQNQNVILPKEQIFDRIWG-YDSDTTVTVV 194 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E ++SK+RKKL++ + + + R +GY Sbjct: 195 EVYMSKIRKKLKDTEFVNNLSTLRNVGY 222 >gi|327402249|ref|YP_004343087.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327317757|gb|AEA42249.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 225 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 67/127 (52%), Gaps = 2/127 (1%) Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSD 136 +S SL L+ + G DD + KP H E++AR+ +I RR K N E G ++V Sbjct: 78 LSARNSLDDKLEGLNLGADDYLTKPFHFSELIARIRSIVRRKKFDGNALFEIGNLQVDIT 137 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVVESHIS 195 + + GE L R+E I YL++N+G+ V+KT + ++G DE+ + S I Sbjct: 138 NQALSMNGEPIVLNRKEFAIFMYLVSNKGRLVSKTALAEHVWGDNIDESDNFEFIYSQIK 197 Query: 196 KLRKKLR 202 LRKK+ Sbjct: 198 NLRKKMN 204 >gi|302552346|ref|ZP_07304688.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302469964|gb|EFL33057.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 226 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVGGTKIDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKVEPDPG 209 >gi|241113399|ref|YP_002973234.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861607|gb|ACS59273.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 222 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 4/157 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ ++ S++P+I ++ SL + DSG DD + KP E+ AR+ A+ RR + Sbjct: 63 LKRLRQSGSKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQDR 122 Query: 123 NNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + T +FS G R V GE L RE +LE L+ G V+K + +++G F Sbjct: 123 ASSEITVGNLLFSGGTRQFFVAGEPLQLTPREYAVLEQLVMKHGITVSKAALSESVFG-F 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D+ + + +E ++ +LRKKL + + + R LGY Sbjct: 182 DDEADASAIEIYVHRLRKKLESS--SVQIATLRGLGY 216 >gi|269926598|ref|YP_003323221.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269790258|gb|ACZ42399.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 233 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 8/147 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + +R S+VP+I IS Y ++ ++ +SG DD V KP H E+ ARV RR + Sbjct: 63 LEVCKRLREWSKVPIIVISAYDDVEYVVEALNSGADDYVRKPFHQEELFARVKTQLRRAE 122 Query: 121 VSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ GP+ + R + E L E ILE L+ N GK + + + Sbjct: 123 ERPSQQVQSVFRCGPLTINFSRRQVTLNDEEVKLTPTEYSILEQLVQNAGKVMTHQMLLN 182 Query: 176 AIYGLFDEAVEEN-VVESHISKLRKKL 201 ++G E EEN + +I +LR+KL Sbjct: 183 RVWG--PEYTEENEYLRVYIGRLRRKL 207 >gi|86361041|ref|YP_472928.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86285143|gb|ABC94201.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 222 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 8/143 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ ++ +++P+I ++ SL + DSG DD + KP E+ AR+ A+ RR Sbjct: 63 LKRLRQSGNKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRR---G 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +RA + G +R R V+GE L RE +LE L+ G V+K + +++ Sbjct: 120 QDRASSEITVGNLRFSGGTRQFFVEGEPLQLTPREYAVLEQLVMKLGTTVSKAALSESVF 179 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G FD+ + + +E ++ +LRKKL Sbjct: 180 G-FDDEADPSAIEIYVHRLRKKL 201 >gi|21222625|ref|NP_628404.1| response regulator [Streptomyces coelicolor A3(2)] gi|7242751|emb|CAB77324.1| putative response regulator [Streptomyces coelicolor A3(2)] gi|298285547|emb|CAD67559.2| regulatory protein [Streptomyces lividans] Length = 223 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 59 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 119 PEEVAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 179 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 206 >gi|23099620|ref|NP_693086.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22777850|dbj|BAC14121.1| two-component response regulator involved in phosphate regulation [Oceanobacillus iheyensis HTE831] Length = 231 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 75/136 (55%), Gaps = 6/136 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEV 146 + G DD + KP +E++ARV AI RR ++SNN + G + ++ + + E+ + Sbjct: 93 LEMGADDYLTKPFSPKEVIARVKAILRRSQLSNNHGFHVLKIGELSIYPERYEAEMSNNI 152 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKL 205 R+E +L +L ++GK +++ Q+ S+++ +D + +V+ HIS LR K+ N Sbjct: 153 ITFTRKEFELLYHLAKHKGKVISRDQLLSSVWD-YDFIGDTRIVDVHISHLRDKIEPNSK 211 Query: 206 GFDPVDSKRFLGYSID 221 + + R LGY ++ Sbjct: 212 KPVYIKTVRGLGYKME 227 >gi|254712082|ref|ZP_05173893.1| DNA-binding response regulator [Brucella ceti M644/93/1] gi|254715152|ref|ZP_05176963.1| DNA-binding response regulator [Brucella ceti M13/05/1] gi|261216863|ref|ZP_05931144.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261319730|ref|ZP_05958927.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|260921952|gb|EEX88520.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261292420|gb|EEX95916.1| two component transcriptional regulator [Brucella ceti M644/93/1] Length = 225 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +LI+D ++ +G ++ + L+ SAR D+ ++ L G+G Sbjct: 3 IILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARYDLVLLDLMLPDGQG--- 59 Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R +R P+I ++ + + ++G DD + KP E+ AR+ A+ RR Sbjct: 60 LSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRY 119 Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N E G +++ + G L RE +LE + + G+ ++K Q +Y Sbjct: 120 SGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQFEEHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD VE N +E H+S+LRK KLG +++ R +GY + Sbjct: 180 S-FDTEVESNTMEVHVSRLRK----KLGHAIIETVRGIGYRL 216 >gi|295109722|emb|CBL23675.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 227 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 77/145 (53%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IR +S+VP+I ++ + L F+ GVD+ ++KP + ++ARV AI RR Sbjct: 65 EVCREIRKNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTGQ 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N+ G I + V G L +E +L Y + N+G +++ +I ++++ Sbjct: 125 DAGNDVLSAGGIVIDKSAHQATVDGRQMELSFKEFELLTYFLENQGIALSREKILNSVWN 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR K+ +K Sbjct: 185 -YDYFGDARTIDTHVKKLRSKMGDK 208 >gi|257438363|ref|ZP_05614118.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii A2-165] gi|257199194|gb|EEU97478.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii A2-165] Length = 232 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/205 (24%), Positives = 95/205 (46%), Gaps = 10/205 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D L+ D L G + S L D+ ++ L G GE V Sbjct: 9 LLIIEDDVLLNDMTKRLLTQHGYCVTSAYSGSEALLLIEKGTFDLILLDLMLPGIPGETV 68 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE +++ +P+IG+S + + ++ +G DD + KP ++E+L R A+ RR + Sbjct: 69 LEK---MKSTMDIPIIGVSAKTDIDSKVNLIRNGADDYITKPFDNQELLVRTEAVLRRFQ 125 Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S + +R + ++ + +++ L R E IL+ LM++ K K IF Sbjct: 126 KSTTPNNSKILRFKDLSLDTEAMEAKIRNTPITLTRYEYLILQLLMSSPSKVFTKNNIFE 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKK 200 +++ + ++N + HI LRKK Sbjct: 186 SVWN-ENFVGDDNAINVHIGNLRKK 209 >gi|255524686|ref|ZP_05391638.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296185644|ref|ZP_06854053.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255511580|gb|EET87868.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049772|gb|EFG89197.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 230 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 87/164 (53%), Gaps = 9/164 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S+VP+I IS S + +SG DD + KP ++ ++A++ + RR Sbjct: 66 RKIRQQSKVPIIFISARDSGMDQVMALESGADDYITKPFYYDLVIAKIKSHLRRAFGDYA 125 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K+ E +R + + + E + + + +RE ++EYLM K V++ + I+ Sbjct: 126 PKIEERIVEVDGLRFYPERLELEFKEQRLIITKREGILIEYLMKKYPKVVSRDFLLEKIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 E VEEN + +IS++RK+L+N LG D +++ R GY ++ Sbjct: 186 DDI-EFVEENTLSVNISRIRKRLQN-LGIDGGIETIRGAGYRLN 227 >gi|163849055|ref|YP_001637099.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222527023|ref|YP_002571494.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163670344|gb|ABY36710.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222450902|gb|ACM55168.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 227 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 76/138 (55%), Gaps = 12/138 (8%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPI----RVFSDGRDPEVQ 143 F+SG DD + KP E+LARV A+ RR +N+ G I R ++ R E + Sbjct: 91 FESGADDYLVKPFAFEELLARVRALGRRFHPNLSANDELRVGTIVLDLRNYT-ARRGERR 149 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ P E R+LEYLM N G+ + + QI ++ F+ V+ +V+ +IS LR+KL Sbjct: 150 LDLTPT---EWRLLEYLMRNVGQTLTRQQILDYVWS-FEHDVQPQMVDVYISYLRRKLNA 205 Query: 204 KLGFDPVDSKRFLGYSID 221 DP+++ R +GY ++ Sbjct: 206 SGETDPINTIRGIGYRLE 223 >gi|317402058|gb|EFV82653.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 261 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 8/151 (5%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETG 129 S+ P++ ++ ++ + D+G DD + KP RE+ AR A+ RR V + G Sbjct: 100 SKTPVLALTARIDIEDRVHALDTGADDYLAKPFDFRELEARCRALLRRPSVQAAGVLRFG 159 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + S R + G+ LP+RE +LE L+ + V+K +I + ++ FD+ N Sbjct: 160 DLVIDSAARQVSLAGQRIDLPKREYSLLEILLGGMNRAVSKAEIANKLFA-FDDDAAPNA 218 Query: 190 VESHISKLRKKLRNKLGFDP--VDSKRFLGY 218 +E +I++LR+KL P ++++R GY Sbjct: 219 IEVYIARLRRKLEGS----PLRIETQRGTGY 245 >gi|256786305|ref|ZP_05524736.1| response regulator [Streptomyces lividans TK24] gi|289770196|ref|ZP_06529574.1| response regulator [Streptomyces lividans TK24] gi|289700395|gb|EFD67824.1| response regulator [Streptomyces lividans TK24] Length = 226 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEEVAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209 >gi|229042428|ref|ZP_04190174.1| Two-component response regulator [Bacillus cereus AH676] gi|229108177|ref|ZP_04237799.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229126003|ref|ZP_04255026.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228657428|gb|EEL13243.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228675193|gb|EEL30415.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228726882|gb|EEL78093.1| Two-component response regulator [Bacillus cereus AH676] Length = 228 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 76 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 135 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 136 GIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 194 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 195 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 223 >gi|30018758|ref|NP_830389.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|29894299|gb|AAP07590.1| Two-component response regulator [Bacillus cereus ATCC 14579] Length = 232 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 80 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 139 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 140 GIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 198 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 199 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 227 >gi|326801440|ref|YP_004319259.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326552204|gb|ADZ80589.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 227 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 105/225 (46%), Gaps = 4/225 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V+ D++ L + L G++ + F++ E E L + + G G ++ Sbjct: 3 ILVIEDNKELASSIHDYLAGENYICELAFSATEAREKLLFFTYDCIILDIMLPDGNGLEL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L + H ++ IS +L + + G DD + KP H E+ AR+ AI+RR Sbjct: 63 LNLVK--EEHINGSILIISAKGALDDKIKGLEEGADDYLTKPFHLPELHARLRAIHRRKN 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + NN I + ++ + ++ G+ R+E +L Y + N+ + +++ I + ++G Sbjct: 121 LDGNNIISFKEITLNTNTFELKIHGKALDATRKEFELLLYFLVNKNRVLSRQAIANHLWG 180 Query: 180 LF-DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + D + V H+ LRKK+ G D +D+ LGY + N Sbjct: 181 DYTDNLSNVDFVYQHVKNLRKKINMAGGDDYIDTIYGLGYKFNTN 225 >gi|229159651|ref|ZP_04287662.1| Two-component response regulator [Bacillus cereus R309803] gi|228623802|gb|EEK80617.1| Two-component response regulator [Bacillus cereus R309803] Length = 228 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 76 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 135 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 136 GIELFGKDKDVQVDGQGIKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 194 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 195 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 223 >gi|39998208|ref|NP_954159.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39985154|gb|AAR36509.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] Length = 227 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 104/215 (48%), Gaps = 11/215 (5%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L++D Y+ L G D L G E W++ A D+ ++ L G+ LE+ + +R Sbjct: 16 TLLRD-YLRLAGFDVCCLAG--GAEAAPWVREHA-PDLVLLDLMLPGRDG--LEICKDVR 69 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 S VP+I I+ L + G DD + KP RE++ARV A+ RR A Sbjct: 70 VFSSVPIIMITARIEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSGPGQTTALA 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE-AVEE 187 G + + R + G L E ++L++L A+ G+ ++ Q+ IY DE V + Sbjct: 130 GLVMDGACYR-AALDGHELDLTAVEFKLLQFLAASPGRIYSRQQLMDRIYP--DERVVAD 186 Query: 188 NVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 ++SHI KLRKK+ + G D + S +GY + Sbjct: 187 RTIDSHIKKLRKKIADVAPGEDLIHSVYGVGYKFE 221 >gi|288920186|ref|ZP_06414502.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] gi|288348436|gb|EFC82697.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] Length = 226 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRTLRARSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRVE 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +VS+ E G +R+ + V G LP +E +LE + N G+ + + Q+ + Sbjct: 122 TEEVSDTTLEVGRVRMDVERHVVTVDGNQVSLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ + G Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRTKIEAEPG 209 >gi|157267317|gb|ABV26372.1| PhoP [Proteus mirabilis] Length = 230 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 105/222 (47%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D L++ F D G ++ + + + + DV+ ++ L E + Sbjct: 9 ILIIEDNILLRHHLSVQFRDAGHQVDAAQDAKEADHFIAESTPDVAIVDLGL--PDEDGI 66 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L R R ++ +P++ ++ S Q + ++G DD V KP H EI+ARV A+ RR + Sbjct: 67 SLIRRWRENNITIPIMVLTARESWQEKVTALNAGADDYVTKPFHFEEIVARVQALMRRNM 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ P + ++ + GE L E ILE LM N+ K V+K + +Y Sbjct: 127 GIASQILTIAPFELDLSRKEFMILGEQIKLTAFEYTILETLMRNQNKVVSKDVLMRQLYP 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E + ++ + +LRKK+ K D + + R GY D Sbjct: 187 -DAEQRESHTIDVLMGRLRKKILQKYDNDVIVTVRGQGYRFD 227 >gi|126728700|ref|ZP_01744515.1| probable two-component response regulator protein [Sagittula stellata E-37] gi|126710630|gb|EBA09681.1| probable two-component response regulator protein [Sagittula stellata E-37] Length = 225 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 108/230 (46%), Gaps = 22/230 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLE----GFNSLEFEEWLQSSAREDVSAIEAFLIGK- 56 +L +D V D +A + G S++ G ++L + + D++ ++ L G Sbjct: 3 IMLAEDDTKVADYIVAGLSEHGHSVDHVADGRDALSYLLYNDC----DLAILDRMLPGMD 58 Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL+ R + +P++ ++ + ++ +G DD + KP H E++AR+ AI Sbjct: 59 GLSVLKALRA--SKKSLPVLFLTAMGQVDDRVEGLAAGSDDYLTKPFHFSELVARIDAIV 116 Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR + RAE P+ D R QG V L +E ILE LM N G+ V + Sbjct: 117 RR--KTETRAE--PVLTVHDLTLDLLARTATRQGTVMELHSKEFAILEILMRNSGRVVTR 172 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 T + ++ F+ VVE+H+S+LR K+ + + R GYS+ Sbjct: 173 TLLLERVWN-FNFDPNTTVVETHMSRLRAKVDKPFETPLIHTIRNTGYSM 221 >gi|329849819|ref|ZP_08264665.1| feuP protein [Asticcacaulis biprosthecum C19] gi|328841730|gb|EGF91300.1| feuP protein [Asticcacaulis biprosthecum C19] Length = 226 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VLE R R P++ ++ + + FD+G DD + KP H E+LAR+ A+ Sbjct: 59 GVSVLE--RWRREGKMTPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALV 116 Query: 117 RRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR + A+ G +R+ V GE L E R+L YLM ++ + +++T+ Sbjct: 117 RR---AAGHAQPLLVCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYLMMHQNRVISRTE 173 Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +Y FD + N +E + +LRKK+ N D +++ R LGY + Sbjct: 174 LVEHLYDQDFDR--DSNTIEVFMGRLRKKIGN----DRIETVRGLGYRL 216 >gi|325066495|ref|ZP_08125168.1| PhoP-like protein [Actinomyces oris K20] Length = 238 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 34/225 (15%) Query: 23 GVSLEGFNSLEFE------EWLQSSARED-VSAIEAFLIGKGEKVLELPRI--------I 67 G+ +GF +E E E ++S R V I+ L+ L LPR+ I Sbjct: 23 GLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLD-----LMLPRLDGTEVCTRI 77 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R S VP+I ++ + + + G DD V KP +RE+LAR+ A+ RR + + E Sbjct: 78 RRSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKAVLRRSRAAAPEPE 137 Query: 128 ----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 G +R+ + + V GEV +P RE +LE + + G+ + ++QI ++G D Sbjct: 138 PVLVAGGVRMDVERHEVRVDGEVVAMPLREFELLELFLRHPGRVLTRSQILERLWG-PDY 196 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSIDWN 223 + ++ HI K+LR ++ D + + R LGY +D + Sbjct: 197 EGDTKTLDVHI----KRLRGRIEVDASKPVLITTVRGLGYRLDGD 237 >gi|219667720|ref|YP_002458155.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537980|gb|ACL19719.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 233 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 20/208 (9%) Query: 18 LFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LELP 64 L DD V L + L E++ AR+ A+E F + + + V +E+ Sbjct: 7 LIADDEVELAELVKDFLSDEQYEALVARDGHEALELFRMNQPQLVILDIMMPGLDGMEVC 66 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IRA S VP+I +S + + G DD + KP E++ARV A RR K+S Sbjct: 67 RRIRAESNVPIIMLSAKKAEVDKILGLGLGADDYIVKPFSPGEVVARVKAQLRRFKMSAV 126 Query: 125 RAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + +S G + + G L +E +L +L + + + + QIF+ ++ Sbjct: 127 PEPKTRLLSYSGLEIDVQGYEAALAGRPLELTTKEFELLRFLALHPNQVLTREQIFANVW 186 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG 206 G F+E+ + N V HI KLR+K+ + L Sbjct: 187 G-FNESGDLNTVTVHIKKLREKIESDLA 213 >gi|320162273|ref|YP_004175498.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319996127|dbj|BAJ64898.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 225 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 23/219 (10%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 RAL +GY+ +LEG L+ L R D+ ++ L G LE+ + + Sbjct: 20 RALTYEGYLV-----ESALEGETGLQ----LAREHRPDLIILDWML--PGMDGLEVCQRL 68 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R P++ ++ +LQ + D+G DD + KP E+LAR+ A+ RR ++ E Sbjct: 69 RTLCNAPILMLTAKDTLQDRVQGLDAGADDYMTKPFELEELLARIRALLRRTQM-----E 123 Query: 128 TGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 P+ F+D R PL +E +LE + + + + + IF ++G + Sbjct: 124 RAPVLSFADLTLDTSTRQATRGNRTIPLTAKEYDLLELFLRHPRQVLTREMIFDRVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D E NV++ +I LR+KL + + + R +GY + Sbjct: 183 DFGGESNVLDVYIRYLRQKLESDGEPRLLHTVRGVGYVL 221 >gi|255655475|ref|ZP_05400884.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296451467|ref|ZP_06893204.1| response regulator [Clostridium difficile NAP08] gi|296880184|ref|ZP_06904150.1| response regulator [Clostridium difficile NAP07] gi|296259734|gb|EFH06592.1| response regulator [Clostridium difficile NAP08] gi|296428773|gb|EFH14654.1| response regulator [Clostridium difficile NAP07] Length = 241 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 97/195 (49%), Gaps = 22/195 (11%) Query: 40 SSAREDVSAIEAFLI--------GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFF 91 SS +E +S+ E LI G G EL + IR SQ+P+I ++ + Sbjct: 42 SSGKEMISSNEYSLILLDVTLPDGTG---YELCQYIRGFSQIPIIFLTACDEEVNIVMGL 98 Query: 92 DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP--- 148 D G DD + KP RE+++R+ A+ RR +N E+ I F D ++ V+ Sbjct: 99 DIGGDDYITKPFRIRELISRIKAVLRR--KANTVEESKKILKFGDLSIYTLEARVYKNDK 156 Query: 149 ---LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 L E ++L L+ N+ +++TQI ++ + + V +N + +I +LR+K+ + L Sbjct: 157 EVFLTSVEYKLLLILIQNKNTVLSRTQILEKLWDVTYDFVNDNTLTVYIKRLREKIGDDL 216 Query: 206 GFDP--VDSKRFLGY 218 +P +++ R LGY Sbjct: 217 C-EPIYIETVRGLGY 230 >gi|254387142|ref|ZP_05002413.1| response regulator [Streptomyces sp. Mg1] gi|194345958|gb|EDX26924.1| response regulator [Streptomyces sp. Mg1] Length = 223 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 59 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 179 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 206 >gi|326772505|ref|ZP_08231789.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505] gi|326637137|gb|EGE38039.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505] Length = 243 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 34/225 (15%) Query: 23 GVSLEGFNSLEFE------EWLQSSARED-VSAIEAFLIGKGEKVLELPRI--------I 67 G+ +GF +E E E ++S R V I+ L+ L LPR+ I Sbjct: 26 GLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLD-----LMLPRLDGTGVCTRI 80 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R S VP+I ++ + + + G DD V KP +RE+LAR+ A+ RR + + E Sbjct: 81 RRSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKAVLRRSRAAAPEPE 140 Query: 128 ----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 G +R+ + + V GEV +P RE +LE + + G+ + ++QI ++G D Sbjct: 141 PVLVAGGVRMDVERHEVRVDGEVVAMPLREFELLELFLRHPGRVLTRSQILERLWG-PDY 199 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSIDWN 223 + ++ HI K+LR ++ D + + R LGY +D + Sbjct: 200 EGDTKTLDVHI----KRLRGRIEVDASKPVLITTVRGLGYRLDGD 240 >gi|322392158|ref|ZP_08065620.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321145058|gb|EFX40457.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 224 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K + N G + V + V G V L Sbjct: 91 FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLSYGDLTVNLSTNEVRVDGTVVEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + KTQIF ++G FD +VVE ++SK+RKKL+ + Sbjct: 151 LGKEFELLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGSDFAEN 209 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 210 LQTLRSVGY 218 >gi|260769434|ref|ZP_05878367.1| two-component system response regulator QseB [Vibrio furnissii CIP 102972] gi|260614772|gb|EEX39958.1| two-component system response regulator QseB [Vibrio furnissii CIP 102972] gi|315181964|gb|ADT88877.1| DNA-binding response regulator [Vibrio furnissii NCTC 11218] Length = 218 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 83/163 (50%), Gaps = 6/163 (3%) Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 ++ L I RA +P++ ++ + + D G DD + KP E++AR+ + RR Sbjct: 60 LMVLRHIRRAGFTLPILILTARDDIDDRVKGLDGGADDYLIKPFALEELMARLRVLIRRQ 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R + G + + + + QG L E ++L LM + G+ ++K Q+ +++ Sbjct: 120 SGYCDTRIDVGELSLSLSEQSVDFQGNRLKLTNNEFKLLASLMTHAGRVLSKEQLQQSLH 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +DE +N +E HI LRKK+ N + + + R +GY I+ Sbjct: 180 G-WDEGASDNAIEVHIHNLRKKVSNHV----IKNIRGVGYIIE 217 >gi|323359874|ref|YP_004226270.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323276245|dbj|BAJ76390.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 224 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 5/218 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + +G + EG S+ R D+ ++ + G + Sbjct: 8 LVLDDDETIRLSVVTALRAEGFTAEGAPDGTDLTARLSAFRPDLVVLDWMM--PGPAGIR 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +IRA +I ++ + L F G DD V KP E++AR A+ RR Sbjct: 66 LLPVIRAEGDTAVIMLTARDEVDDRLRGFAEGADDYVTKPFTVAELVARTGAVLRRRGRL 125 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 G + V D G L E R+L+ L +RG+ ++K QI + ++G D Sbjct: 126 PQTIAIGDLVVDPDAAVAHRAGGPLDLTATEFRLLQLLAESRGRTLSKGQILTQVWGYDD 185 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+VE H+S LR+K+ + G + + R LGY + Sbjct: 186 --YDPNLVEVHLSALRRKMEAR-GPRLIHTVRGLGYRL 220 >gi|289178119|gb|ADC85365.1| YycF [Bifidobacterium animalis subsp. lactis BB-12] Length = 255 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 L R + +VP+I ++ + + + G DD V KP RE+LAR+ A+ RR Sbjct: 83 LCRRMHELRRVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLRRSLEP 142 Query: 119 ----LKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N+ T GPI + + + GE+ P +E +LEYLM N+G+ + + Q+ Sbjct: 143 RASGTPGGNDETLTCGPIEMSVASHEVRIHGELTQFPLKEFEVLEYLMRNKGRVLTRQQL 202 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220 ++G D + ++ H+ K++R K+ DP + + R LGY I Sbjct: 203 IGRVWG-SDYVGDTKTLDVHV----KRIRAKIEADPSNPALLTTVRGLGYRI 249 >gi|256847496|ref|ZP_05552942.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] gi|256716160|gb|EEU31135.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] Length = 228 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 11/204 (5%) Query: 27 EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+ + L+ L+++ ED I L+ +E+ R +R P+I ++ S Sbjct: 24 EGYETDVELDGRAGLEAALNEDFDVILLDLMLPELNGIEVARRVREEKNTPIIIMTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SNNRAETG----PIRVFSD 136 + + D G DD + KP E+LARV A+ RR+ + +NN +T + + + Sbjct: 84 VIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISIEDGNNNNHQTTVKYQDLTIEKE 143 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 R EV L +RE +L LM N +++ ++ S ++G +D VE NVV+ +I Sbjct: 144 NRVVRRGDEVINLTKREYELLLILMENINVVMSRQELLSKVWG-YDAKVETNVVDVYIRY 202 Query: 197 LRKKLRNKLGFDPVDSKRFLGYSI 220 LR K+ + + R GY I Sbjct: 203 LRNKIDRPGEKSYIQTVRGTGYVI 226 >gi|254472679|ref|ZP_05086078.1| two-component response regulator [Pseudovibrio sp. JE062] gi|211958143|gb|EEA93344.1| two-component response regulator [Pseudovibrio sp. JE062] Length = 225 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/196 (28%), Positives = 99/196 (50%), Gaps = 15/196 (7%) Query: 35 EEWLQSSARE-DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFD 92 + +L ++ RE DV ++ G G VL+ R ++ VP++ ++ S++ ++ D Sbjct: 35 DAFLNATTREYDVIVLDRMTPGLDGLSVLKALR--STNNSVPVLFLTALGSVEDRVEGLD 92 Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI------RVFSDGRDPEVQGEV 146 +G DD + KP E+LARV+A+ RR S N ET ++ + G+ Sbjct: 93 AGGDDYLPKPFAFSELLARVSALGRR--PSTNSGETTSCLEVEKFQLNLLKQQCTRAGQP 150 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKL 205 PL +E R+ E + N+G+ + K + ++ + FD +VVE+HIS+LR K+ Sbjct: 151 VPLNAKEFRLFETFIRNKGRVLTKNMLLEKVWDMNFDPT--SSVVETHISRLRSKIEKPF 208 Query: 206 GFDPVDSKRFLGYSID 221 + + + R GY +D Sbjct: 209 DIELIRTIRGAGYILD 224 >gi|158319979|ref|YP_001512486.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140178|gb|ABW18490.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 227 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 81/161 (50%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---R 117 +E+ R IR S +P+I ++ + + D G +D + KP E+LAR+ A R Sbjct: 63 IEVLRKIRQTSTIPIIMLTAKDEVMDKVIGLDMGANDYMTKPFAIEELLARIRAALKAGR 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +L N + G +++ +D E+ L ++E +L Y + N+ + + +I A+ Sbjct: 123 QLVSKENTLQLGNLKLDTDMYKVTYGTEIIELTKKEFDLLHYFLENKNIVLTRDKILQAV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +G +D + N+V+ +I LR K+ +K + + R +GY Sbjct: 183 WG-YDYIGDTNIVDVYIRYLRSKIDDKYNIKLIHTVRGVGY 222 >gi|253578135|ref|ZP_04855407.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850453|gb|EES78411.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 234 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 79/145 (54%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +S+VP+I ++ + L FD GVD+ ++KP + ++ARV AI RR Sbjct: 73 EVCREIRKNSKVPIIMLTARSDERDELLGFDLGVDEYISKPFSPKILVARVEAILRRTGQ 132 Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N + G I + V G+ L +E +L Y + N+G +++ +I ++++ Sbjct: 133 NNPEDVISAGGIVIDKAAHLATVDGKPMELSFKEFELLTYFLENQGIALSREKILNSVWN 192 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR K+ +K Sbjct: 193 -YDYFGDARTIDTHVKKLRSKMGDK 216 >gi|197284770|ref|YP_002150642.1| DNA-binding transcriptional regulator PhoP [Proteus mirabilis HI4320] gi|227357776|ref|ZP_03842125.1| two-component response regulator [Proteus mirabilis ATCC 29906] gi|194682257|emb|CAR41989.1| two-component response regulator [Proteus mirabilis HI4320] gi|227162105|gb|EEI47119.1| two-component response regulator [Proteus mirabilis ATCC 29906] Length = 224 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 105/222 (47%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D L++ F D G ++ + + + + DV+ ++ L E + Sbjct: 3 ILIIEDNILLRHHLSVQFRDAGHQVDAAQDAKEADHFIAESTPDVAIVDLGL--PDEDGI 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L R R ++ +P++ ++ S Q + ++G DD V KP H EI+ARV A+ RR + Sbjct: 61 SLIRRWRENNITIPIMVLTARESWQEKVTALNAGADDYVTKPFHFEEIVARVQALMRRNM 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ P + ++ + GE L E ILE LM N+ K V+K + +Y Sbjct: 121 GIASQILTIAPFELDLSRKEFMILGEQIKLTAFEYTILETLMRNQNKVVSKDVLMRQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E + ++ + +LRKK+ K D + + R GY D Sbjct: 181 -DAEQRESHTIDVLMGRLRKKILQKYDNDVIVTVRGQGYRFD 221 >gi|239831448|ref|ZP_04679777.1| two component transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239823715|gb|EEQ95283.1| two component transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 235 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 8/155 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 R+ +P++ ++ + D+G DD V KP H E+LAR+ A+ RR +++ Sbjct: 74 RSGRAMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAGHASSEL 133 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 GP+ + + + G L E R+L YLM + + V++T++ +Y FD Sbjct: 134 VCGPLYLDTKTSKASINGVALKLTSHEYRLLSYLMHHMDEVVSRTELVEHLYDQDFDR-- 191 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E + +LRK K+G D +++ R +GY I Sbjct: 192 DSNTIEVFVGRLRK----KMGVDLIETVRGMGYRI 222 >gi|168185772|ref|ZP_02620407.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] gi|169296218|gb|EDS78351.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] Length = 223 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 27/221 (12%) Query: 9 ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 L GYI DG+S +E F +F+ + + I+ F++ + II Sbjct: 21 VLKNSGYIVEVASDGLSGIEMFEKYKFDLIILDIM---LPKIDGFVVCE---------II 68 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R S VP+I ++ + F+ +DD + KP ++ RV A+ RR SNN ++ Sbjct: 69 RKKSDVPIIMLTALGEEDDEIKGFELKIDDYITKPFSINLLIKRVEAVLRRY--SNNPSK 126 Query: 128 TG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 I+++ V L +E +ILE LM N G+ ++ + I+G Sbjct: 127 NSEATLVFEEIKIYPSNYKTLVNENEIELTVKEFQILESLMKNPGQVFTRSSLLDMIWG- 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + V+++HI K LR KL D + + R +GY I+ Sbjct: 186 YDYFGDTRVIDTHI----KNLRQKLNVDYIKTIRGVGYKIE 222 >gi|117923628|ref|YP_864245.1| two component transcriptional regulator [Magnetococcus sp. MC-1] gi|117607384|gb|ABK42839.1| two component transcriptional regulator, winged helix family [Magnetococcus sp. MC-1] Length = 221 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 7/150 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GP 130 VP+I ++ + + +D +G DD + KP H E++AR+ A+ RR A T G Sbjct: 73 VPVIILTAWDAWHQRVDGLQAGGDDYLGKPFHMEELIARLNALIRRRHGVVRPALTLEGI 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 +D + GE+ L E R+L YLM + + ++K+Q+ IY +DE + NV+ Sbjct: 133 HLDETDQQLSLANGELHTLTHTEFRLLRYLMLHPDQLLSKSQLTEHIYA-YDEDRDSNVI 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E +I K+LR LG ++++R GY + Sbjct: 192 EVYI----KRLRRLLGQQRIETRRGQGYRL 217 >gi|90419141|ref|ZP_01227052.1| DNA-binding two-compenent response regulator [Aurantimonas manganoxydans SI85-9A1] gi|90337221|gb|EAS50926.1| DNA-binding two-compenent response regulator [Aurantimonas manganoxydans SI85-9A1] Length = 224 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 7/132 (5%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H E+LAR+ A+ RR +++ GP+R+ + + G L Sbjct: 91 IDAGADDYVTKPFHVEEVLARLRALIRRAAGHASSEIHCGPLRLDTRAARVTLDGTALKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L+YLM ++ + V++T++ +Y FD + N +E + +LRKKL G + Sbjct: 151 TSHEYRLLDYLMHHQDQIVSRTELIEHLYDQDFDR--DSNTIEVFVGRLRKKLG---GAE 205 Query: 209 PVDSKRFLGYSI 220 +++ R GY + Sbjct: 206 LIETVRGQGYRM 217 >gi|311696375|gb|ADP99248.1| DNA-binding response regulator [marine bacterium HP15] Length = 226 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 96/194 (49%), Gaps = 13/194 (6%) Query: 35 EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDS 93 +E + +A ED + + G L + + +RA +QVP++ +S + ++ Sbjct: 34 KEGMMMAASEDYDIMIVDRMLPGMDGLSIIKTVRATGNQVPVLILSALGDVDDRVEGLRG 93 Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVF 147 G DD + KP E+LAR+ ++ RR + S AET + +D R + G+ Sbjct: 94 GGDDYLTKPFSFTELLARIESLVRRNRQS---AETETVLRVADLEMDLLARTVKRAGQNI 150 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG 206 + RE R+LEYLM N G+ V +T + ++ FD + NV++ HIS+LR K+ + Sbjct: 151 DVQPREFRLLEYLMRNAGQVVTRTMLLEKVWDYHFDP--QTNVIDVHISRLRAKIDKEFD 208 Query: 207 FDPVDSKRFLGYSI 220 + + R GY + Sbjct: 209 TPLLQTIRGAGYML 222 >gi|258516072|ref|YP_003192294.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779777|gb|ACV63671.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 225 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 80/162 (49%), Gaps = 8/162 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I ++ L F+ G D+ V KP + ++ARV A+ RR+ Sbjct: 66 VCREIRKTSHVPIIMLTARAEESDELFGFELGADEYVTKPFSPKILVARVQALLRRIAEH 125 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI--YG 179 N+ + + GR V G L +E +L YL+ N+G+ + + QI +A+ Y Sbjct: 126 KNQMISIEGLEIDESGRCVTVDGVPLDLSMKEFELLNYLVNNQGRALNRDQILNAVWDYN 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F +A V++HI LR KL K F + + R LGY + Sbjct: 186 YFGDA---RTVDTHIKNLRHKLGAKGLF--IKTIRGLGYKFE 222 >gi|218514582|ref|ZP_03511422.1| probable two-component response regulator protein [Rhizobium etli 8C-3] Length = 223 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 87/169 (51%), Gaps = 14/169 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE + +P + R P+I ++ + + ++ D G DD + KP E++AR+ A+ Sbjct: 57 GEGLRFIPELRRTGKDTPIIVLTALNAPKERVEGLDLGADDYLGKPFLVEELMARLRAVL 116 Query: 117 RR------LKVSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 RR LK++ R P+ + + G P LPRRE +L L + K V Sbjct: 117 RRPPSLSELKITAGRMVIDPLHLSVTVGDTP------LDLPRRELLVLAALARRKEKTVL 170 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ + +A+Y ++E ++ N +++HIS+LRK+L + + + R +GY Sbjct: 171 RSTLEAAVYN-YEEEIQSNALDAHISRLRKRLADAGAEVSIHNIRGVGY 218 >gi|183601907|ref|ZP_02963276.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|219682821|ref|YP_002469204.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|241190397|ref|YP_002967791.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195803|ref|YP_002969358.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218792|gb|EDT89434.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|219620471|gb|ACL28628.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|240248789|gb|ACS45729.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250357|gb|ACS47296.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793384|gb|ADG32919.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis V9] Length = 235 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 L R + +VP+I ++ + + + G DD V KP RE+LAR+ A+ RR Sbjct: 63 LCRRMHELRRVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLRRSLEP 122 Query: 119 ----LKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N+ T GPI + + + GE+ P +E +LEYLM N+G+ + + Q+ Sbjct: 123 RASGTPGGNDETLTCGPIEMSVASHEVRIHGELTQFPLKEFEVLEYLMRNKGRVLTRQQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220 ++G D + ++ H+ K++R K+ DP + + R LGY I Sbjct: 183 IGRVWG-SDYVGDTKTLDVHV----KRIRAKIEADPSNPALLTTVRGLGYRI 229 >gi|227872835|ref|ZP_03991146.1| two component response regulator [Oribacterium sinus F0268] gi|227841305|gb|EEJ51624.1| two component response regulator [Oribacterium sinus F0268] Length = 228 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 1/146 (0%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P++ ++ L+ ++ + G D + KP RE+LA ++A+ RR N G + Sbjct: 73 LPILMLTAKSQLEDRIEGLEGGADYYLTKPFDKRELLACISALLRRQGQEVNSLSFGDLS 132 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + D +D L ++E ++ L+ + + ++K QI ++G +AV EN VE Sbjct: 133 LDLDSKDLSSGAHSLKLSKKEFELMRMLLQGKNQILSKEQILQKVWGYDSDAV-ENHVEV 191 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ LRKKLR + S+R LGY Sbjct: 192 YVGFLRKKLRLLESRVSIQSRRGLGY 217 >gi|86750565|ref|YP_487061.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86573593|gb|ABD08150.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] Length = 257 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 8/130 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 FD+G DD V KP H E+LAR+ A+ RR + + GP+ + + V+G L Sbjct: 119 FDAGADDYVAKPFHLEEVLARIRALLRRSAGHAQSELTCGPVVLDTRTGRVSVRGHPVKL 178 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V++T++ +Y FD + N +E + ++RK KL D Sbjct: 179 TSHEYRLLAYLMHHSGRVVSRTELVEHLYDQDFDR--DSNTIEVFVGRIRK----KLDVD 232 Query: 209 PVDSKRFLGY 218 + + R LGY Sbjct: 233 IIQTVRGLGY 242 >gi|317127472|ref|YP_004093754.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315472420|gb|ADU29023.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 236 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 11/153 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G K E+ + IR S+ P+I +S ++ + D+G DD + KP E+ AR+ A Sbjct: 58 GMKGYEICQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANL 117 Query: 117 RRLKVSNNRAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 RR K++ NR E P RVFS D D +G L +E ++L L+ N+ Sbjct: 118 RRSKMNANRNE--PKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVF 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + +I+ I+G+ D + V HIS LR+K+ Sbjct: 176 SAEKIYDQIWGI-DHCGDLKTVMVHISNLRRKI 207 >gi|312866100|ref|ZP_07726321.1| putative response regulator ArlR [Streptococcus downei F0415] gi|311098504|gb|EFQ56727.1| putative response regulator ArlR [Streptococcus downei F0415] Length = 224 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R N++ T G + + +V G+V L Sbjct: 91 FELGADDYLTKPFYLEELKMRIQALLKRSGKINDKLLTYGDLECDTSTNTVKVNGKVVEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + KTQIF I+G FD +VVE ++SK+RKKL+ Sbjct: 151 LGKEFDLLVYFLQNQNVILPKTQIFDRIWG-FDSDTTVSVVEVYVSKIRKKLKGTDFEKC 209 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 210 LQTLRSVGY 218 >gi|290969322|ref|ZP_06560847.1| response regulator receiver domain protein [Megasphaera genomosp. type_1 str. 28L] gi|290780828|gb|EFD93431.1| response regulator receiver domain protein [Megasphaera genomosp. type_1 str. 28L] Length = 219 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 2/137 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S VP+I ++ L +D GVD+ V KP + ++A++ A++RR K + Sbjct: 65 REIRRESAVPIIMLTAKGEEIDQLFAYDLGVDEYVTKPFSPKILVAKIKAVFRRSKHAAE 124 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E + + D R + G+ L E ++L YLM+N GK +++ QI + ++ +D Sbjct: 125 -GEACGVCLDKDARQVVLDGKNVDLSPTEYKLLNYLMSNTGKALSRRQILNQVWN-YDYY 182 Query: 185 VEENVVESHISKLRKKL 201 + V++HI++LR KL Sbjct: 183 GDLRTVDTHINRLRIKL 199 >gi|260583532|ref|ZP_05851280.1| DNA-binding response regulator CsrR [Granulicatella elegans ATCC 700633] gi|260158158|gb|EEW93226.1| DNA-binding response regulator CsrR [Granulicatella elegans ATCC 700633] Length = 231 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 83/171 (48%), Gaps = 8/171 (4%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 LQ++ ED I L+ LE+ R +R + P+I ++ S+ + D G DD Sbjct: 41 LQAATDEDWDVILLDLMLPELNGLEVVRRLRQVKKTPIIIMTARDSVMDRVTGLDQGADD 100 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNN-RAETGPIRVFSD------GRDPEVQGEVFPLP 150 V KP EILAR+ A++RRL + R + I + D R GE+ L Sbjct: 101 YVVKPFEIEEILARIRALFRRLSIEEEARVQKQTILEYRDLVIEKENRTVRRNGELIDLT 160 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +RE +L LM N +++ + + ++G + VE NV++ +I LR K+ Sbjct: 161 KREYELLLMLMENINVVLSREVLLNQVWG-YKMEVETNVIDVYIRYLRNKI 210 >gi|332526928|ref|ZP_08403021.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332111370|gb|EGJ11354.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 223 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ + VP++ ++ S++ + D G DD + KP +E+ ARV A+ RR L Sbjct: 63 LKRLRARGASVPVLILTAADSVEQRVKGLDLGADDYMAKPFSLQELEARVRALTRRGLGT 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +++ + GP+ + GR + ++ L RE +LE L+ G+ V+K Q+ + + Sbjct: 123 ASSVIKHGPLTFDATGRVAYLNDQMIELSARELSLLEVLLQRSGRLVSKDQLVERLCE-W 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E V N +E +I +LRKK+ G + + R LGY ++ Sbjct: 182 GEEVSNNAIEVYIHRLRKKIEQ--GPVRIATVRGLGYCLE 219 >gi|229028363|ref|ZP_04184487.1| Two-component response regulator [Bacillus cereus AH1271] gi|228732911|gb|EEL83769.1| Two-component response regulator [Bacillus cereus AH1271] Length = 229 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 77 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTKQTIRYK 136 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 137 GIELFGKDKDIQVDGQGIKLTLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 195 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 196 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 224 >gi|254471900|ref|ZP_05085301.1| two component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] gi|211959102|gb|EEA94301.1| two component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] Length = 219 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 8/160 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L R R +P++ ++ + D+G DD V KP H E+LARV A+ RR + Sbjct: 61 LERWRRDGHSMPVLILTARDRWSDKVAGIDAGADDYVAKPFHMEEVLARVRALVRRAAGL 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 ++N G I + + G L E R+L YLM ++G+ +++T++ +Y Sbjct: 121 ASNEISIGDIVLDTKAGKVTKNGMSVKLTSHEFRLLSYLMHHKGRVISRTELVEHLYDQD 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + N +E + +LRKK + L +++ R LGY + Sbjct: 181 FDR--DSNTIEVFVGRLRKKFGSSL----IETVRGLGYRL 214 >gi|110639900|ref|YP_680110.1| two-component system response regulator [Cytophaga hutchinsonii ATCC 33406] gi|110282581|gb|ABG60767.1| two-component system response regulator [Cytophaga hutchinsonii ATCC 33406] Length = 225 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 6/169 (3%) Query: 55 GKGEKVL-ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G G +L EL R+ +A + +I IS S++ + + G DD + KP H E+ ARV Sbjct: 57 GSGFDILKELKRLDKASN---VIIISAKNSIEDKVAGLNLGADDYLIKPFHIAELTARVK 113 Query: 114 AIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ RR + N E +++ + R + E L R+E +L Y M N+ + + KT Sbjct: 114 SVLRRKTLKGKNELEINNVKIQFEDRVAFINNEPIALNRKEFDVLAYFMVNKNRLINKTS 173 Query: 173 IFSAIYGLF-DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G F DE+ + + S I LRKKL+++ + + +GY + Sbjct: 174 LAEHVWGDFTDESDDFEFIYSQIKNLRKKLKDQQAAIEIQAVYGIGYKL 222 >gi|296501330|ref|YP_003663030.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296322382|gb|ADH05310.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 223 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 71 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++G FD + Sbjct: 131 GIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 189 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 190 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 218 >gi|163854114|ref|YP_001642157.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens PA1] gi|163665719|gb|ABY33086.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens PA1] Length = 239 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R IRA + +P+I ++ + +G DD V KP E+LARV A+ R Sbjct: 68 IELCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLR 127 Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R K ++ + G I + QG L E ++LEYLM + G+ ++ Q+ Sbjct: 128 RAKPTHVSDMLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLD 187 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ H+ +LRK + DP+ + R GYS D Sbjct: 188 GVWG-HDVYIDERTVDVHVGRLRKAINRPRQSDPIRTVRGSGYSFD 232 >gi|293607199|ref|ZP_06689540.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC 43553] gi|292814291|gb|EFF73431.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC 43553] Length = 219 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 91/182 (50%), Gaps = 12/182 (6%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100 DV +A ++ G V++ +++ A +P++ ++ + + D+G DD + Sbjct: 41 DVETFDAVVLDLGLPVMDGLTVLKLWRAAQRNMPVLILTARDNWHEKVAGIDAGADDYLT 100 Query: 101 KPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159 KP H E+LARV A+ RR ++ + GP+ + + + G+ L E ++L Sbjct: 101 KPFHMEELLARVRALLRRSTAHASAQWRCGPLMLDTRQARVTIDGQALSLTSHEFKVLSV 160 Query: 160 LMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 LM G+ V++T++ +Y FD + N ++ I++LRKKL +++ R LGY Sbjct: 161 LMQRAGEVVSRTELIDHVYAQDFDR--DSNTIDVFIARLRKKLPPG----TIETVRGLGY 214 Query: 219 SI 220 + Sbjct: 215 RL 216 >gi|307705285|ref|ZP_07642149.1| response regulator [Streptococcus mitis SK597] gi|307621167|gb|EFO00240.1| response regulator [Streptococcus mitis SK597] Length = 218 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 18/225 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++G D G E + + +E L+ + +V+ + + LE Sbjct: 4 LIVEDEEMIREGISDYLTDCG--YETIEAADGQEALEKFSSYEVALVLLDIQMPKLNGLE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 62 VLAEIRKTSQVPVLMLTAFQDEEYKMTAFASLADGYLEKPFSLSLLKVRVDAIFKRY--- 118 Query: 123 NNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +TG I + D + + GE + +E IL+YL+ N G+ + ++QI A Sbjct: 119 ---YDTGRIFSYKDTKVDFESYSASLAGEEVAINAKELEILDYLVKNEGRALTRSQIIDA 175 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ DE + V++ +I K+LR KL D + + R +GY ++ Sbjct: 176 VWKATDEVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216 >gi|228993316|ref|ZP_04153232.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] gi|228999369|ref|ZP_04158948.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|229006924|ref|ZP_04164554.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|228754324|gb|EEM03739.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|228760314|gb|EEM09281.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|228766384|gb|EEM15027.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] Length = 238 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 11/138 (7%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSN---------NRAETGPIRVFSDGRDPEVQG 144 G DD + KP RE++ARV AI RR K+ + N +R+ + + QG Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRTKLQDEPVSEVQDENSINIYDLRILPEFYEAYFQG 155 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RN 203 E L +E +L YL N+G+ + + Q+ SA++ +D A + +V+ HIS LR K+ +N Sbjct: 156 EKLELTPKEFELLVYLARNKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEKN 214 Query: 204 KLGFDPVDSKRFLGYSID 221 + + R LGY ++ Sbjct: 215 TKKPAYIKTIRGLGYKLE 232 >gi|115523941|ref|YP_780852.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115517888|gb|ABJ05872.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 231 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 10/164 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VLE R R +P++ ++ + FD+G DD V+KP H E+LAR+ A+ Sbjct: 59 GIAVLEAWR--RNARAMPVLILTARDRWSDKVQGFDAGADDYVSKPFHLEEVLARIRALL 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + + GP+ + + V G + E R+L YLM + G+ V++T++ Sbjct: 117 RRTAGHAQSELSCGPVVLDTRTGRVSVNGAPVKMTSHEYRLLAYLMHHTGRVVSRTELVE 176 Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y FD + N +E + ++R+ KL D + + R LGY Sbjct: 177 HLYDQDFDR--DSNTIEVFVGRIRR----KLDVDIIQTVRGLGY 214 >gi|59713619|ref|YP_206394.1| putative transcriptional regulatory protein [Vibrio fischeri ES114] gi|59481867|gb|AAW87506.1| putative transcriptional regulatory protein [Vibrio fischeri ES114] Length = 225 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 103/216 (47%), Gaps = 18/216 (8%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 +AL ++G+I DDG +E L + D I + L++ I Sbjct: 18 KALEQEGFIVDSSDDG-----------KEGLMMAISCDYQLIILDRMLPNLDGLKILSAI 66 Query: 68 RAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 RA + P++ +S S+ ++ +G DD + KP E+LAR+ I RR ++ ++ Sbjct: 67 RATGNNTPVLILSALDSVDQRVEGLTAGSDDYLTKPFALAELLARINIILRRNRPIESAS 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182 N + + + + + + PL +E +L YL N + V++ ++F A + FD Sbjct: 127 NELKIKNLNINLRSQKVTINDNIVPLQNKEFILLRYLAENADEVVSRMRLFEAAWDYHFD 186 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + NV++ HI+KLRKKL N D +++ R GY Sbjct: 187 P--KTNVIDVHIAKLRKKLDNSGAVDLIETVRGAGY 220 >gi|239815367|ref|YP_002944277.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239801944|gb|ACS19011.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 219 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA Q +P++ + S+Q ++ D+G DD V KP E+LAR+ A+ RR Sbjct: 60 LEVLRSLRARKQRMPVLIATARDSVQQRIEGLDAGADDYVLKPYDLDELLARIRALLRR- 118 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + RAE + + R+ V+G+ L RE +LE L+A G +++ Q+ Sbjct: 119 --AAGRAEPVYEHMGVSINPATREVAVEGQPVVLSAREWAVLEPLIARPGMVLSRAQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y DE + N VE ++ LRK KLG + + + R +GY + Sbjct: 177 KLYSWKDE-ISSNAVEVYVHGLRK----KLGAELIRNVRGVGYMV 216 >gi|145297360|ref|YP_001140201.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142850132|gb|ABO88453.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 218 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 8/151 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPI 131 P++ ++ L ++ ++G DD + KP E++ARV A+ RR +++ E G + Sbjct: 73 TPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRRAAGNASSILEIGGV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190 R+ +G L E R+L YLM +RGK V+++++ IY FD + N V Sbjct: 133 RLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYAQDFDR--DSNTV 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E I ++RKK D +++ R LGY I+ Sbjct: 191 EVFIGRIRKKTHA----DLIETVRGLGYRIN 217 >gi|307244117|ref|ZP_07526235.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492488|gb|EFM64523.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 226 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGPIRVFSDGRDPEVQGEVF 147 + G DD + KP +E++AR+ + RR ++S+ E G I + +D V G Sbjct: 93 LNVGADDYITKPFSIKELMARINTVLRRYRISDKSQPVIEAGNIVLNTDQYKLTVDGLKV 152 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLG 206 L R+E +L+ LM NRGK + + + ++G ++ E V+ HI LRKKL ++ Sbjct: 153 DLTRKEFELLKLLMENRGKVLKRDYLLEKVWG-YEFYGETRTVDVHIRHLRKKLGLDETS 211 Query: 207 FDPVDSKRFLGYSI 220 + +D+ R LGY + Sbjct: 212 ENGIDTIRGLGYKM 225 >gi|167770186|ref|ZP_02442239.1| hypothetical protein ANACOL_01529 [Anaerotruncus colihominis DSM 17241] gi|167667508|gb|EDS11638.1| hypothetical protein ANACOL_01529 [Anaerotruncus colihominis DSM 17241] Length = 230 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 4/158 (2%) Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R A +P+I ++ +L+ F +G DD + KPI E+L RV+A+ RR ++ Sbjct: 69 LTRELREAGFDLPVIMVTARETLEDKHMGFLAGTDDYMVKPIDFEELLWRVSALLRRAQI 128 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S + E G I++ D + LP++E ++L L+ GK + Q+ I+GL Sbjct: 129 ASGHTLEIGGIKLDYDALSVTTEQGTDVLPKKEFQLLFKLLNTPGKTFTRQQLMDDIWGL 188 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +E V+ HI +LR+K F V + R LGY Sbjct: 189 -DSDADERTVDVHIKRLREKFGGFSQFKIV-TVRGLGY 224 >gi|297565541|ref|YP_003684513.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849990|gb|ADH63005.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 224 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 2/159 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR ++VP+I ++ S++ + G DD + KP H E+LAR+ + R + Sbjct: 62 EVARRIRVGAEVPIIVLTAADSVERKVTLLSGGADDYIVKPFHPAELLARI-QVQLRHRE 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + V R G+ L +E +L L GK ++T+I ++G Sbjct: 121 GGEQVTIGELEVHLSKRQVFYDGQEVRLSPKEFELLSLLCTRPGKVFSRTEIEEHLWGRS 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E + NVV+ H++ LR KLR + + + R +GY++ Sbjct: 181 LER-DSNVVDVHVANLRSKLRESGAYGYLRTVRGVGYAL 218 >gi|315455530|emb|CAY26034.2| PhoP protein [Streptomyces sp. ATCC 55098] Length = 226 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209 >gi|218533059|ref|YP_002423875.1| two component transcriptional regulator PhoB, winged helix family [Methylobacterium chloromethanicum CM4] gi|240141569|ref|YP_002966049.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens AM1] gi|254564081|ref|YP_003071176.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens DM4] gi|218525362|gb|ACK85947.1| two component transcriptional regulator PhoB, winged helix family [Methylobacterium chloromethanicum CM4] gi|240011546|gb|ACS42772.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens AM1] gi|254271359|emb|CAX27372.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens DM4] Length = 234 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R IRA + +P+I ++ + +G DD V KP E+LARV A+ R Sbjct: 63 IELCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLR 122 Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R K ++ + G I + QG L E ++LEYLM + G+ ++ Q+ Sbjct: 123 RAKPTHVSDMLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLD 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ H+ +LRK + DP+ + R GYS D Sbjct: 183 GVWG-HDVYIDERTVDVHVGRLRKAINRPRQSDPIRTVRGSGYSFD 227 >gi|314933599|ref|ZP_07840964.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87] gi|313653749|gb|EFS17506.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87] Length = 219 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 2/160 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R IR P+I I+ + D G DD + KP E+LAR+ AI RR + Sbjct: 61 LKICRQIRQEQSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-Q 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + I + D V G L + E +L L NR + + QI ++G Sbjct: 120 PQKNVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F+ VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 179 FNSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218 >gi|291294434|ref|YP_003505832.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290469393|gb|ADD26812.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 234 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR+ P+I ++ L + G DD V KP RE++ARV A+ RR+ Sbjct: 71 LEVLRRIRSSGHTPVILVTARTEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRRVV 130 Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ E GP+ + S+ + G L E R+LE L GK ++ ++ A Sbjct: 131 LAEAPKEVLRVGPLEIDSEKVVARLGGVRLELTPTEFRLLEALARTPGKAFSRAELLEA- 189 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 L D E VV+ H+ LR+KL G +++ R +GY + W Sbjct: 190 -ALPDSDALERVVDVHLKNLRRKLEAAGGAGLLETVRGVGYRL-WT 233 >gi|302544413|ref|ZP_07296755.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus ATCC 53653] gi|302462031|gb|EFL25124.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus ATCC 53653] Length = 226 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209 >gi|240142635|ref|YP_002967148.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens AM1] gi|240012582|gb|ACS43807.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens AM1] Length = 220 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 105/224 (46%), Gaps = 15/224 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D ++ DG A G G ++E + + +++R V ++ L G G +V Sbjct: 3 ILVVEDDPILSDGLRAGLGLSGATVECVGTCADADAALATSRFGVVVLDLMLPDGSGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R + V L+ D ++ + D G DD + KP E+ AR+ A+ RR Sbjct: 63 LRGLRRRDDRTPVVLLTARD--AVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRR-- 118 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + RA E G IR+ G V G P+ RRE +L LM +KT++ Sbjct: 119 -AAGRASAGLEHGGIRLDPAGLVVTVDGVNVPVSRREFMVLAALMERPNVLRSKTELEER 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E VE N VE H+ LR K+G +++ R +GY + Sbjct: 178 LYG-WQEEVESNAVEVHVHNLRA----KIGKQAIETVRGVGYRM 216 >gi|50954116|ref|YP_061404.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950598|gb|AAT88299.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 240 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 12/207 (5%) Query: 23 GVSLEGFNSLEFEEWLQS--SAREDV---SAIEAFLIGKGEKVLELPRIIR-AHSQVPLI 76 G++ EG++ + + + R+D +AI+ L G EL R IR + + +P++ Sbjct: 19 GLAAEGYDVTLMTNGVDALIALRDDTYSAAAIDVML--PGMSGFELCRHIRDSGTAMPIL 76 Query: 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGPIRVF 134 ++ +++ + DSG DD + KP E+ ARV A+ RR + + R + G + + Sbjct: 77 LLTARDAIEDRVHGLDSGADDYLTKPFAFAELAARVRALLRR-EPTGMRPQIIVGRLTID 135 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 S V G PL RRE +L N K +++ I +++G E + NV++ ++ Sbjct: 136 SHEHQTLVSGHEMPLSRREFTLLRLFATNPDKTLSRADILESVWG-TTENIGTNVIDQYV 194 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSID 221 S LRKKL + ++R GY +D Sbjct: 195 SYLRKKLDVAGAGLSIVTERGRGYRLD 221 >gi|326332055|ref|ZP_08198340.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium Broad-1] gi|325950193|gb|EGD42248.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium Broad-1] Length = 225 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 13/168 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ R IRA S VP+I ++ + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQIRATSSVPVIMVTAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGTE 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GP+R+ + V G LP +E +LE + N G+ + + Q+ ++ Sbjct: 122 PDAAPATLEAGPVRMDVERHVVTVDGNEQRLPLKEFELLEMFLRNPGRVLTRGQLIDRVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 G D + ++ H+ K+LR KL DP + K R LGY +D Sbjct: 182 G-SDYVGDTKTLDVHV----KRLRAKLEPDPSEPKFLVTVRGLGYKLD 224 >gi|288962372|ref|YP_003452667.1| two-component response regulator [Azospirillum sp. B510] gi|288914638|dbj|BAI76123.1| two-component response regulator [Azospirillum sp. B510] Length = 246 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L R+ A P++ +S + + G DD + KP RE++AR+ AI RR K Sbjct: 63 LRRLRAARVTTPILILSGLTEMDNKIKGLGFGADDYLTKPFDKRELIARIQAIVRRSKGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S++ TG + V D R EV L +E ILE L +G + K + +YG Sbjct: 123 SDSIIRTGRLTVNLDTRTVEVDQSPLHLTGKEYGILELLSLRKGTTLTKEMFLNHLYGGM 182 Query: 182 DEAVEENVVESHISKLRKKL 201 DE E +++ + KLRKKL Sbjct: 183 DEP-ELKIIDVFVCKLRKKL 201 >gi|256059536|ref|ZP_05449736.1| DNA-binding response regulator [Brucella neotomae 5K33] gi|261323505|ref|ZP_05962702.1| transcriptional regulatory protein [Brucella neotomae 5K33] gi|261299485|gb|EEY02982.1| transcriptional regulatory protein [Brucella neotomae 5K33] Length = 225 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 103/222 (46%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +LI+D ++ +G ++ + L+ S R D+ ++ L G+G Sbjct: 3 IILIEDDPILGAAVRDHIATEGHCVDWVSRLDTAHDYMESVRYDLVLLDLMLPDGQG--- 59 Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R +R P+I ++ + + ++G DD + KP E+ AR+ A+ RR Sbjct: 60 LSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRY 119 Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N E G +++ + G L RE +LE + + G+ ++K Q+ +Y Sbjct: 120 SGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD VE N +E H+S+LRK KLG +++ R +GY + Sbjct: 180 S-FDTEVESNTMEVHVSRLRK----KLGHAIIETVRGIGYRL 216 >gi|283798568|ref|ZP_06347721.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1] gi|291073696|gb|EFE11060.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1] gi|295092881|emb|CBK78988.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 225 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 76/144 (52%), Gaps = 2/144 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR +SQVP++ ++ Q L F GVD+ ++KP + ++ARV AI RR Sbjct: 65 EVLKTIRKYSQVPILMLTARGEEQDELQGFKLGVDEYISKPFSPKILVARVEAILRRSSP 124 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + G I + E+ G+ L +E ++ Y N+G +++ +I + ++ Sbjct: 125 GAKDVIDVGGIHIDKTAHQVEIDGKPVDLSYKEFELMTYFAENQGIALSREKILNNVWN- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR KL K Sbjct: 184 YDYFGDARTIDTHVKKLRSKLGEK 207 >gi|67458448|ref|YP_246072.1| transcriptional activator protein CzcR [Rickettsia felis URRWXCal2] gi|67003981|gb|AAY60907.1| Transcriptional activator protein CzcR [Rickettsia felis URRWXCal2] Length = 237 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 7/162 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 L R+ A + P++ +S + F SG DD + KP E++AR+ AI RR K Sbjct: 63 LLRLRAAKIKTPILILSSLTDTDQKITGFSSGTDDYLTKPFVREELIARIKAIVRRSKGH 122 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S R + + V D R EV G+ L +E ILE L+ RG + K + +Y Sbjct: 123 VASVFRFD--KVSVNLDTRTVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 DE E +++ I KLRKKL + G D +D+ GY + Sbjct: 181 SVDEP-EMKIIDVFICKLRKKLSDAAGGRDYIDTIWGRGYML 221 >gi|268607886|ref|ZP_06141617.1| two component transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 223 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 9/160 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 I++ P+I ++ +T+ FD G DD + KP RE+++R+ + R + + Sbjct: 67 IKSDGATPVIFLTASSDEFSTVTGFDLGADDYIAKPFRPRELISRIKNVLRLTGNTGSVT 126 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + G + V + G L E R+L + NRG +++T++ +I+ + E V Sbjct: 127 QLGDVLVDTVKGTASKNGNDLYLSALEYRLLLVFINNRGAVLSRTKLLESIWDIAGEYVN 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 +N + +I +LR+K+ + DP D K R LGY +D Sbjct: 187 DNTLTVYIKRLREKIED----DPQDPKIIRTVRGLGYKVD 222 >gi|28210565|ref|NP_781509.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28203002|gb|AAO35446.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 230 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 94/187 (50%), Gaps = 15/187 (8%) Query: 45 DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D++ ++ + G G KVL + IR S +P+I I+ + + G DD + KP Sbjct: 46 DLAILDIMMPGLDGFKVL---KKIREKSNIPVIFITARGEDENKILGLGLGADDYIVKPF 102 Query: 104 HHREILARVAAIYRRLKVSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156 E++ARV A++RR+ + N+ E G + + D G L +E +I Sbjct: 103 SPMEVVARVKALFRRVGTYSQNSSKDINKIENGELSLNKDSCTFYKNGNPIELNAKEYKI 162 Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK--R 214 +E+LM N+G+ K QI+ ++G ++ + N + HIS +R K+ + +P+ K R Sbjct: 163 MEFLMENKGRVHTKKQIYEKVWG-YEYYGDANTIMVHISHIRDKIEDNPK-EPIYLKTIR 220 Query: 215 FLGYSID 221 +GY ++ Sbjct: 221 GIGYKLE 227 >gi|77408353|ref|ZP_00785094.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77173034|gb|EAO76162.1| DNA-binding response regulator [Streptococcus agalactiae COH1] Length = 228 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 9/168 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 EL R+IR SQ+P+I ++ + + + G DD + KP + E+LAR+ + RR Sbjct: 56 ELTRLIRQDSQIPIIMLAAKTTDMDRILGLNIGADDFITKPFNSLEVLARINSQLRRYYE 115 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K N + G + + + + G+ L E +IL LM++ GK KTQ++ Sbjct: 116 FNSLAKPKNQFIKIGELELDEEHVELTKNGKHIKLTATEFKILHILMSSPGKIYTKTQLY 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 I G + E +E + HIS +R K+ + + + + R +GY I+ Sbjct: 176 EKINGRYLEG-DETTIMVHISNIRDKIEDDSKYPKYIKTLRGVGYKIE 222 >gi|330992747|ref|ZP_08316691.1| Transcriptional regulatory protein qseB [Gluconacetobacter sp. SXCC-1] gi|329760225|gb|EGG76725.1| Transcriptional regulatory protein qseB [Gluconacetobacter sp. SXCC-1] Length = 223 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 10/203 (4%) Query: 22 DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIRAHSQVPLIGISD 80 DG +++ F ++E ++ D ++ L G G +L I R S + ++ + Sbjct: 23 DGHAVDWFTTIEDARAALATVAYDFMLLDLGLPDGNGRDLLR--EIRRTSSDIAILVTTA 80 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGPIRVFSDGR 138 + + G DD + KP E++AR+AA+ RR +A+ G I + + R Sbjct: 81 EDQVSDRIAGLSDGADDYIVKPYDLNELVARIAAVARRYAAPRRQAQYHIGDITIDRENR 140 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 G+ L RE I+E L + G+ ++ QI +A+Y L D+ V+ N VE IS+LR Sbjct: 141 SVSRAGQGLNLTAREWAIMELLSRSPGRIYSRQQIDTALYAL-DQDVDSNTVEVFISRLR 199 Query: 199 KKLRNKLGFDPVDSKRFLGYSID 221 +K+ N + + + R GY +D Sbjct: 200 RKVGNTV----IRTIRGRGYCLD 218 >gi|239916919|ref|YP_002956477.1| PhoP-like protein [Micrococcus luteus NCTC 2665] gi|281414626|ref|ZP_06246368.1| PhoP-like protein [Micrococcus luteus NCTC 2665] gi|289706878|ref|ZP_06503219.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|239838126|gb|ACS29923.1| PhoP-like protein [Micrococcus luteus NCTC 2665] gi|289556428|gb|EFD49778.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 226 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 13/197 (6%) Query: 27 EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + + E L R+ I L+ G E+ R +R S VP+I ++ S Sbjct: 24 EGFEVTVAADGNEALSVFERDSADLILLDLMLPGMSGTEVCRQVRQRSNVPVIMLTAKDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAETGPIRVFSDGRD 139 + + G DD V KP RE++ARV A+ RR + + GP+R+ + Sbjct: 84 EIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGEQEEPMSATISAGPVRMDVERHV 143 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 V GE LP +E +LE L+ N G+ + + Q+ ++G D + ++ H+ K Sbjct: 144 VSVDGEQVSLPLKEFELLEMLLRNAGRVLTRGQLIDRVWG-SDYVGDTKTLDVHV----K 198 Query: 200 KLRNKLGFDPVDSKRFL 216 +LR+K+ DP S R+L Sbjct: 199 RLRSKIEPDP-SSPRYL 214 >gi|15673576|ref|NP_267750.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|12724600|gb|AAK05692.1|AE006390_2 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|326407060|gb|ADZ64131.1| Two-component system regulator [Lactococcus lactis subsp. lactis CV56] Length = 230 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 6/162 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R P+I ++ S + D G DD + KP E+LARV A +RR + Sbjct: 64 EVARRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123 Query: 122 SN--NRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + RAE R + R +V L RRE +L LM N G V + + S Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G ++E E NVV+ +I LR K+ + + + R LGY Sbjct: 184 VWG-YEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGY 224 >gi|291458665|ref|ZP_06598055.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon 078 str. F0262] gi|291419198|gb|EFE92917.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon 078 str. F0262] Length = 225 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 72/139 (51%), Gaps = 2/139 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR HS+VP+I ++ L F+ G D+ ++KP + ++ARV A+ RR + Sbjct: 70 IREHSRVPVIMLTARSEETDELRGFEYGADEYISKPFSPKILVARVEALLRRSGIQQEET 129 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 G I + V G+ L +E +L Y + NRG +++ +I + ++ +D Sbjct: 130 VSVGGIEIDKSAHSVRVDGKELELSFKEYELLLYFVENRGIALSREKILNNVWN-YDYFG 188 Query: 186 EENVVESHISKLRKKLRNK 204 + +++H+ KLR KL++K Sbjct: 189 DARTIDTHVKKLRAKLKSK 207 >gi|281492173|ref|YP_003354153.1| Two-component system regulator [Lactococcus lactis subsp. lactis KF147] gi|281375844|gb|ADA65338.1| Two-component system regulator [Lactococcus lactis subsp. lactis KF147] Length = 230 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 6/162 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R P+I ++ S + D G DD + KP E+LARV A +RR + Sbjct: 64 EVARRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123 Query: 122 SN--NRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + RAE R + R +V L RRE +L LM N G V + + S Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G ++E E NVV+ +I LR K+ + + + R LGY Sbjct: 184 VWG-YEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGY 224 >gi|260430399|ref|ZP_05784372.1| DNA-binding response regulator [Citreicella sp. SE45] gi|260418428|gb|EEX11685.1| DNA-binding response regulator [Citreicella sp. SE45] Length = 223 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 17/193 (8%) Query: 45 DVSAIEAFLIGKGEKV----LELPR-----IIRAHSQ----VPLIGISDYPSLQTTLDFF 91 D + +AFL +G + L LP ++RA + P+I ++ + Sbjct: 32 DGAEADAFLAQEGADLVVLDLNLPHMDGLAVLRAMRRRGDGTPVILLTARSETAERVAGL 91 Query: 92 DSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLP 150 D+G DD + KP E+ AR+ A+ RR + R G + + R G +P Sbjct: 92 DAGADDYLTKPFEMDELEARLRAMARRKDLEFAARERLGALIFDRNARQLFQDGTPLDIP 151 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 R+E LE L+ G+ V+K Q+ S +YG + +E +E H+S+LRK+L G + Sbjct: 152 RKEIATLECLLERSGRIVSKAQLISHVYGTGSD-TDETAIEPHVSRLRKRL-EPFGI-RI 208 Query: 211 DSKRFLGYSIDWN 223 + R LGY +D N Sbjct: 209 KTARGLGYMLDVN 221 >gi|229086169|ref|ZP_04218386.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228697141|gb|EEL49909.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 225 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 6/147 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S+VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESEVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVVEENTLSMAGIDVNRLSRTVSVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 +G +D ++ V++HI KLR KL +K Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209 >gi|229586314|ref|YP_002844815.1| Transcriptional activator protein CzcR [Rickettsia africae ESF-5] gi|228021364|gb|ACP53072.1| Transcriptional activator protein CzcR [Rickettsia africae ESF-5] Length = 237 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A + P++ +S + F SG DD + KP E++AR+ AI RR S Sbjct: 63 LLRLRAAKIKTPILILSSLMDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRR---S 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + + V D R EV G+ L +E ILE L+ RG + K + +Y Sbjct: 120 KGHAASVFRFDKVSVNLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 DE E +++ I KLRKKL + G D +D+ GY + Sbjct: 180 SSVDEP-EMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYML 221 >gi|116512403|ref|YP_809619.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|116108057|gb|ABJ73197.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] Length = 230 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 6/162 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R P+I ++ S + D G DD + KP E+LARV A +RR + Sbjct: 64 EVARRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123 Query: 122 SN--NRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + RAE R + R +V L RRE +L LM N G V + + S Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G ++E E NVV+ +I LR K+ + + + R LGY Sbjct: 184 VWG-YEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGY 224 >gi|310827934|ref|YP_003960291.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308739668|gb|ADO37328.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 227 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 14/152 (9%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE+VL + +R S +I +S T + +G DD + KP ++ E+LAR+ A+ Sbjct: 62 GEEVL---KSLRQTSDTLVIAVSAKDDSPTKISLLKNGADDYITKPFNNEELLARIEALL 118 Query: 117 RRLKVSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR S N + +G + + ++G+ L +RE +ILE LM N + +K Sbjct: 119 RR--NSGNTSLSGKTLTYKGLTLNPSTYEVYLKGQPLSLTKREYKILELLMQNPQRVFSK 176 Query: 171 TQIFSAIY-GLFDEAVEENVVESHISKLRKKL 201 I+ ++ LF E+N + HIS LR+KL Sbjct: 177 NVIYETVWEDLF--LGEDNAINVHISNLRQKL 206 >gi|308182574|ref|YP_003926701.1| putative transcriptional regulator [Helicobacter pylori PeCan4] gi|308064759|gb|ADO06651.1| putative transcriptional regulator [Helicobacter pylori PeCan4] Length = 223 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/231 (28%), Positives = 112/231 (48%), Gaps = 32/231 (13%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFLIG 55 M VL+ ++ V G I + G++ +GF SLE E+L D+ + ++ Sbjct: 1 MRVLLIEKNSVLGGEI----EKGLNAKGFMADVTESLEDGEYLM-----DIRNYDLVMVS 51 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 + + I HS + ++ SD P+ + + F+ G DD + KP +R I A VA I Sbjct: 52 DKNALSFVSGIKEKHSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKP--YRSIKALVARI 109 Query: 116 YRRLKV-SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RL+ +N E G + ++ GR+ EV+G+ F +L +L +R + Sbjct: 110 EARLRFWGSNVIEIGDLIISPDEEKIIYKGREVEVKGKPF-------EVLTHLARHRDQI 162 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+K Q+ AI+ E V NV+E I+++R+K+ LG V++ R GY Sbjct: 163 VSKEQLLDAIWE-EPEMVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 212 >gi|297563243|ref|YP_003682217.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847691|gb|ADH69711.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 231 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 8/166 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRTLRQKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V E GP+R+ + V+G+ LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 DEVVLPAALEAGPVRMDVERHVVTVRGDNVQLPLKEFELLEVLLRNAGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221 +G D + ++ H+ +LR K+ G P + + R LGY + Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEEDPG-SPRYIVTVRGLGYKFE 225 >gi|145298120|ref|YP_001140961.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142850892|gb|ABO89213.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 229 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 108/235 (45%), Gaps = 37/235 (15%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV- 60 +L++D ++ DG + G +++ WLQ + A + K E+ Sbjct: 3 ILLVEDDVMLGDGMVDALRSSGYTVD---------WLQQ-------GLPALSVLKSEEFA 46 Query: 61 -----LELP--------RIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106 L LP R +R QV P++ ++ +L + D+G DD + KP + Sbjct: 47 ALILDLNLPDIDGISLLRKLRREGQVLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQ 106 Query: 107 EILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 E+ AR+ A+ RR K E G I + + + +GE L E ++L+ L+ G Sbjct: 107 ELNARLRALVRRSKGQAQAVLEYGDILIHPESQQVTYRGEPVKLTPHEYKLLQELVTQSG 166 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++K Q+ ++YG +DE E N VE HI LRKK + D + + R +GY + Sbjct: 167 RVLSKDQLQQSLYG-WDEGAESNAVEVHIHHLRKKFYS----DLIRNIRGVGYIV 216 >gi|332523841|ref|ZP_08400093.1| putative response regulator ArlR [Streptococcus porcinus str. Jelinkova 176] gi|332315105|gb|EGJ28090.1| putative response regulator ArlR [Streptococcus porcinus str. Jelinkova 176] Length = 224 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 2/134 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K + N G +RV + +V L Sbjct: 91 FELGADDYLTKPFYLEELKMRIQALLKRTGKFNENSITFGNLRVDLNRNAVKVNDRAVEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L YL+ N+ + K+QIF I+G FD +VVE ++SK+RKKL+N Sbjct: 151 LGKEYDLLIYLLQNQNVILPKSQIFDRIWG-FDSDTTISVVEVYVSKIRKKLKNTDFAAN 209 Query: 210 VDSKRFLGYSIDWN 223 + + R +GY + N Sbjct: 210 LQTLRSVGYILKAN 223 >gi|307702057|ref|ZP_07639064.1| VncR, response regulator [Streptococcus mitis NCTC 12261] gi|307616544|gb|EFN95734.1| VncR, response regulator [Streptococcus mitis NCTC 12261] Length = 218 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 108/225 (48%), Gaps = 18/225 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++G D G E + + +E L+ + +V+ + + LE Sbjct: 4 LIVEDEEMIREGISDYLTDCG--YETIEAADGQEALEKFSSYEVALVLLDIQMPKLNGLE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 62 VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRY--- 118 Query: 123 NNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +TG I + D + + GE + +E IL+YL+ N G+ + ++QI A Sbjct: 119 ---YDTGRIFSYKDTKVDFESYSASLAGEEVAVNAKELEILDYLVKNEGRALTRSQIIDA 175 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ DE + V++ +I K+LR KL D + + R +GY ++ Sbjct: 176 VWKATDEVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216 >gi|258425096|ref|ZP_05687967.1| two component response regulator [Staphylococcus aureus A9635] gi|257844930|gb|EEV68973.1| two component response regulator [Staphylococcus aureus A9635] Length = 224 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/198 (23%), Positives = 99/198 (50%), Gaps = 4/198 (2%) Query: 26 LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85 ++ + E L+ ++ V + ++ G +L ++ +P+I ++ +L Sbjct: 26 IDAYTQPSGEAALKLLEKQRVDIVVVDIMMDGMDGFQLCNTLKNDYDIPVIMLTARDALS 85 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQG 144 F SG DD V KP +E++ R+ A+ RR +++N T G + + + +V Sbjct: 86 DKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSN 145 Query: 145 EVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + LP +E ++L +++A R K++ + QI I+G +D +E V+ HI +LR++L+ Sbjct: 146 KTMTLPNKEFQLL-FMLAARPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLKK 203 Query: 204 KLGFDPVDSKRFLGYSID 221 +++ R GY ++ Sbjct: 204 LNATLTIETVRGQGYKVE 221 >gi|187935754|ref|YP_001884404.1| two-component response regulator [Clostridium botulinum B str. Eklund 17B] gi|187723907|gb|ACD25128.1| two-component response regulator [Clostridium botulinum B str. Eklund 17B] Length = 228 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 4/152 (2%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ K ++ + +R S +P+I ++ L + FD G DD + KP E+LAR+ Sbjct: 57 LLTKNLNGMDFLKWVRKQSNIPIIVVTSNNCLFDKVLAFDIGADDYILKPFKAEELLARM 116 Query: 113 AAIYRRLKVSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 AI RR + +N+ + I S + +G + LP +E +L +L+ N K Sbjct: 117 KAIMRRCSIESNKTDIISISDLSVNLSTYEVLFKGNIINLPPKEFELLVFLINNPNKVFT 176 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + ++ I+G D + ++ HI +LR+K Sbjct: 177 RKELLDEIWG-NDYKSDCRTIDVHIKRLREKF 207 >gi|168178452|ref|ZP_02613116.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182671490|gb|EDT83464.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 228 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 99/197 (50%), Gaps = 18/197 (9%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+GY G+ +E F S++ + + D+S GE E+ RIIR Sbjct: 21 LEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLMLPDIS---------GE---EVCRIIR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126 S V + ++ +L ++ + G D+ + KP RE+ ARV A++RRL N+ + Sbjct: 69 QSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTYNSTSNL 128 Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + G + + D R +V G+ + E IL L++N+GK +++ Q+ + I+G+ D Sbjct: 129 IFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKIFGI-DFN 187 Query: 185 VEENVVESHISKLRKKL 201 + ++ HI +RKK+ Sbjct: 188 GYDRTIDVHIKNIRKKI 204 >gi|148379930|ref|YP_001254471.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931088|ref|YP_001384228.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937795|ref|YP_001387768.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289414|emb|CAL83510.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927132|gb|ABS32632.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933709|gb|ABS39208.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 221 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 97/199 (48%), Gaps = 19/199 (9%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQ 85 +L A + + A+E F G + ++ LP+I IR S +P+I ++ + Sbjct: 27 YLVEVATDGLIAVEMFRRGNFDLIILDVMLPKIDGFVVCEIIRKESSMPIIMLTALGEEE 86 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEV 142 + F+ VDD + KP ++ RV A+ RR L+ +N+ I ++ V Sbjct: 87 DEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANGLEENNSTLTFEEITIYPSNYKTLV 146 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + L +E +ILE L++N G+ ++ + + I+G +D + V+++HI K LR Sbjct: 147 NNKEIELTYKEFQILEILISNVGRVFSRESLLNQIWG-YDYFGDTRVIDTHI----KNLR 201 Query: 203 NKLGFDPVDSKRFLGYSID 221 KL D + + R +GY I+ Sbjct: 202 QKLNIDYIKTIRGVGYKIE 220 >gi|15892024|ref|NP_359738.1| transcriptional activator protein czcR [Rickettsia conorii str. Malish 7] gi|15619141|gb|AAL02639.1| transcriptional activator protein czcR [Rickettsia conorii str. Malish 7] Length = 237 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A + P++ +S + F SG DD + KP E++AR+ AI RR S Sbjct: 63 LLRLRAAKIKTPILILSSLTDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRR---S 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + + + D R EV G+ L +E ILE L+ RG + K + +Y Sbjct: 120 KGHAASVFRFDKVSINLDTRSVEVDGKKVHLTNKEYAILELLILRRGTILTKEMFLNHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 DE E +++ I KLRKKL + G D +D+ GY + Sbjct: 180 SSVDEP-EMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYML 221 >gi|291297174|ref|YP_003508572.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290472133|gb|ADD29552.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 224 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 2/159 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +VP+I ++ +++ + G DD + KP H E+LAR+ + R + Sbjct: 62 EVARRIRAGYEVPIIVLTAADAVERKVSLLSDGADDYIVKPFHPAELLARI-QVQLRHRE 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + V R +G+ L +E +L L++ GK ++ +I ++G Sbjct: 121 GGEQISVGGLEVHLAKRQVLFEGQELRLSPKEFELLSLLVSRAGKVFSRQEIEEHLWGRQ 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E + NVV+ HI+ LR KLR + + + R +GY++ Sbjct: 181 LER-DSNVVDVHIANLRAKLREAGAYGYLRTVRGVGYAL 218 >gi|197337216|ref|YP_002158034.1| probable transcriptional regulatory protein YedW [Vibrio fischeri MJ11] gi|197314468|gb|ACH63917.1| probable transcriptional regulatory protein YedW [Vibrio fischeri MJ11] Length = 225 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 7/163 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L++ IRA + P++ +S S+ ++ +G DD + KP E+LAR+ I RR Sbjct: 60 LKILSAIRATGNNTPVLILSALDSVDQRVEGLTAGSDDYLTKPFALTELLARINIILRRN 119 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ ++N + + + + + + PL +E +L YL N + V++ ++F A Sbjct: 120 RPIESASNELKIKNLNINLRSQKVTINDNIVPLQNKEFILLRYLAENADEVVSRMRLFEA 179 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + FD + NV++ HI+KLRKKL N D +++ R GY Sbjct: 180 AWDYHFDP--KTNVIDVHIAKLRKKLDNSGAVDLIETVRGAGY 220 >gi|238796000|ref|ZP_04639512.1| Two-component response regulator of virulence determinant [Yersinia mollaretii ATCC 43969] gi|238720205|gb|EEQ12009.1| Two-component response regulator of virulence determinant [Yersinia mollaretii ATCC 43969] Length = 218 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 5/221 (2%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 ++D AL++ + G ++ + ++ D++ I+ L GE L L Sbjct: 1 MEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLSLI 58 Query: 65 RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVS 122 R R+H + +P++ ++ S Q + ++G DD V KP H E++AR+ A+ RR + ++ Sbjct: 59 RRWRSHQANLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIGLA 118 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + E P ++ R+ V + L E I+E L+ N GK V+K + +Y Sbjct: 119 SQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNSGKVVSKETLMLQLYP-DA 177 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E E + ++ + +LRKKL + + + + R GY D N Sbjct: 178 ELRESHTIDVLMGRLRKKLLAEHEGEVITTIRGQGYRFDAN 218 >gi|187778164|ref|ZP_02994637.1| hypothetical protein CLOSPO_01756 [Clostridium sporogenes ATCC 15579] gi|187775092|gb|EDU38894.1| hypothetical protein CLOSPO_01756 [Clostridium sporogenes ATCC 15579] Length = 228 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 98/197 (49%), Gaps = 18/197 (9%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+GY G+ +E F S++ + + D+S GE E+ +IIR Sbjct: 21 LEKEGYKVYCTTKGLEGIEIFKSIDIQLIILDLMLPDIS---------GE---EVCKIIR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126 S V + ++ +L ++ + G D+ + KP RE+ ARV A++RRL N+ + Sbjct: 69 QSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSADNSTSNL 128 Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + G + + D R +V G+ + E IL L++N+GK +++ Q+ I+G+ D Sbjct: 129 IFDDGKLSIDYDKRVVKVNGKEVSITPNEFDILYALVSNKGKVLSREQLIDKIFGI-DFN 187 Query: 185 VEENVVESHISKLRKKL 201 + ++ HI +RKK+ Sbjct: 188 GYDRTIDVHIKNIRKKI 204 >gi|125623751|ref|YP_001032234.1| two-component system regulator llrA [Lactococcus lactis subsp. cremoris MG1363] gi|8177554|gb|AAF73970.1| putative response regulator Rra [Lactococcus lactis subsp. cremoris MG1363] gi|124492559|emb|CAL97502.1| two-component system regulator llrA [Lactococcus lactis subsp. cremoris MG1363] gi|300070520|gb|ADJ59920.1| two-component system regulator llrA [Lactococcus lactis subsp. cremoris NZ9000] Length = 230 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 6/163 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R P+I ++ S + D G DD + KP E+LARV A +RR + Sbjct: 63 FEVARRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREE 122 Query: 121 VSN--NRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + RAE R + R +V L RRE +L LM N G V + + S Sbjct: 123 HGHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVS 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G ++E E NVV+ +I LR K+ + + + R LGY Sbjct: 183 QVWG-YEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGY 224 >gi|54294190|ref|YP_126605.1| hypothetical protein lpl1254 [Legionella pneumophila str. Lens] gi|54297210|ref|YP_123579.1| hypothetical protein lpp1255 [Legionella pneumophila str. Paris] gi|148358833|ref|YP_001250040.1| DNA-binding response regulator [Legionella pneumophila str. Corby] gi|296106878|ref|YP_003618578.1| DNA-binding response regulator [Legionella pneumophila 2300/99 Alcoy] gi|53750995|emb|CAH12406.1| hypothetical protein lpp1255 [Legionella pneumophila str. Paris] gi|53754022|emb|CAH15493.1| hypothetical protein lpl1254 [Legionella pneumophila str. Lens] gi|148280606|gb|ABQ54694.1| DNA-binding response regulator [Legionella pneumophila str. Corby] gi|295648779|gb|ADG24626.1| DNA-binding response regulator [Legionella pneumophila 2300/99 Alcoy] gi|307610003|emb|CBW99535.1| hypothetical protein LPW_13061 [Legionella pneumophila 130b] Length = 225 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 14/158 (8%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 + P+I ++ S++ + DSG DD + KP E+ AR+ A+ RR S RA++ Sbjct: 71 NSTPVIILTARESIEDRVKGLDSGADDYLIKPFDLNELSARIRALVRR---SQGRADS-V 126 Query: 131 IRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 ++ + DP V + +PRRE +L+ L+ N G+ +++ Q+ +IYG ++E V Sbjct: 127 LQYKNITLDPAAHSVFVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYG-WEEDV 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + N +E HI LRKKL + + R +GY + N Sbjct: 186 DSNALEVHIHNLRKKLNANF----IRTIRGVGYMAEKN 219 >gi|332140234|ref|YP_004425972.1| response regulator [Alteromonas macleodii str. 'Deep ecotype'] gi|327550256|gb|AEA96974.1| response regulator [Alteromonas macleodii str. 'Deep ecotype'] Length = 221 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L I + ++ +P++ ++ + + D+G DD + KP E+LAR+ + RRL + Sbjct: 63 LKSIRKKNATLPVLILTARDKVSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLGTA 122 Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + T + + + + E LPRRE +L+ L+ N G+ ++K Q+ + +Y + Sbjct: 123 SQTIITIKNVSLDTAHHTLTIDNETIHLPRRELMVLKALVENAGRVLSKNQLENKLYE-W 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E V N +E H+S LRKK+ + + + R +GY I Sbjct: 182 GEEVASNTIEVHVSHLRKKMPDNF----IKTIRGVGYCI 216 >gi|329936182|ref|ZP_08285975.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304292|gb|EGG48172.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 226 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 A E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEEAAPVALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209 >gi|160933446|ref|ZP_02080834.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753] gi|156867323|gb|EDO60695.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753] Length = 234 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 9/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VS 122 IR SQVP+I ++ + + FD+ DD + KP ++ + A+ RR + V Sbjct: 78 IRKESQVPIIMLTALDDDASQMKGFDALADDYITKPFSMPLVVKHIEAVLRRAEQGAGVE 137 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N + + +D V+ E L RE IL+ L+ N+G+ + + +I+G +D Sbjct: 138 TNILRYKDLTLDTDSFTVLVKDESVSLTIREFEILKLLVENQGRVFTRESLLDSIWG-YD 196 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E +V +HI K +R KLG D +++ R GY I+ Sbjct: 197 YFGDEKIVNTHI----KNIRKKLGVDYIETIRGAGYKIE 231 >gi|254445350|ref|ZP_05058826.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198259658|gb|EDY83966.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 221 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 91/165 (55%), Gaps = 8/165 (4%) Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 L++ R+IRA S +VP+I +S +D F+SG DD V KP +E++ RV+AI + Sbjct: 56 LQVCRLIRADSSLKEVPIIFLSAKTEEGDRIDGFESGADDYVCKPFSPKELMLRVSAILK 115 Query: 118 RLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R +++ E IR+ + EV+ E L E R+L+ L+ RGK + + Sbjct: 116 RRGEADDAKILEVNGIRMDVEHHRVEVEAEAIELTATEFRLLKLLLEERGKVQTRETLLL 175 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ ++ +E V++H+ +LR+KL N+ + +++ R +GY + Sbjct: 176 KVWN-YENDIETRTVDTHMRRLREKLGNEASW--LETVRGVGYRL 217 >gi|218248373|ref|YP_002373744.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257060302|ref|YP_003138190.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218168851|gb|ACK67588.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256590468|gb|ACV01355.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 231 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 103/220 (46%), Gaps = 21/220 (9%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L++ YI + DG EG + LE I +L+ K V +L R + Sbjct: 18 RTLIQHNYIVDWAQDGK--EGLDYLEI------GLSHYTLGIFDWLLPKLSGV-DLIRKV 68 Query: 68 RAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118 R H S +P++ ++ S + + D+G DD + KP E+LAR+ A+ RR Sbjct: 69 RQHKSSLPILMLTAKDSEEDKVIGLDAGADDYLVKPFGMAELLARLRALQRRSPQINPQQ 128 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 LKV N + +F +D E + L +E ++LEY + + + V + Q+ S ++ Sbjct: 129 LKVGNLTLDYSTYTIFC--QDKEGDNQTIALTNKEFQLLEYFLHHPNQIVTRDQLLSQLW 186 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E + NVV + I LR+KL G + +++ LGY Sbjct: 187 EWESEPM-SNVVAAQIRLLRRKLAPYGGDNWIETIYGLGY 225 >gi|256380732|ref|YP_003104392.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255925035|gb|ACU40546.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 226 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 14/164 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123 +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR S Sbjct: 67 LRQRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGESEELL 126 Query: 124 -NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 E GP+R+ + V GE LP +E +LEYL+ N G+ + + Q+ ++G D Sbjct: 127 PQVLEAGPVRMDVERHVVTVNGEEVALPLKEFDLLEYLLRNVGRVLTRGQLIDRVWG-AD 185 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 + ++ H+ K+LR+K+ DP + R LGY + Sbjct: 186 YVGDTKTLDVHV----KRLRSKVEPDPATPRHLVTVRGLGYKFE 225 >gi|311897404|dbj|BAJ29812.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 249 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 11/134 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFP 148 G DD V KP E++AR+ AI RR + A+ G + V DP G Sbjct: 114 GADDYVTKPFSLEELIARIRAILRR---AGGPADDGRLVVADLTLDPAAHEVTRGGVPVS 170 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L E ++L YLMAN G+ V+K QI ++ +D + ++VES+IS LR+KL + G Sbjct: 171 LSPTEFKLLHYLMANVGRVVSKAQILDHVWA-YDFGGDLSIVESYISYLRRKLDSGPGHG 229 Query: 209 P--VDSKRFLGYSI 220 P + + R +GY++ Sbjct: 230 PKLIHTVRGIGYAL 243 >gi|116512538|ref|YP_811445.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|116108192|gb|ABJ73332.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] gi|300070367|gb|ADJ59767.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris NZ9000] Length = 225 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 5/149 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETG 129 P++ ++ SL + FD G DD + KP + E+ AR+ A+ +R L+ SN + G Sbjct: 76 TPVLIMTAKESLDDKMHGFDIGADDYLTKPFYLDELKARIQALLKRTGKLEDSNGLS-YG 134 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 IR+ + V + L +E ++ YLM N+ + K QIF I+G +D V Sbjct: 135 NIRLNLSNKSTLVDDQPVDLIGKEFDLVVYLMQNQNVILPKEQIFDRIWG-YDSDTTVTV 193 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VE ++SK+RKKL++ + + + R +GY Sbjct: 194 VEVYMSKIRKKLKDTEFVNNLSTLRNVGY 222 >gi|313674517|ref|YP_004052513.1| two component transcriptional regulator, winged helix family [Marivirga tractuosa DSM 4126] gi|312941215|gb|ADR20405.1| two component transcriptional regulator, winged helix family [Marivirga tractuosa DSM 4126] Length = 225 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 4/133 (3%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYR-RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD + KP H E+ +R+ AIYR R + S+N E I + +D ++ +V + L Sbjct: 91 LDAGADDYLGKPFHLLELASRLKAIYRTRKQESSNVIELDKILIDTDKKEVKVGNQFLDL 150 Query: 150 PRRERRILEYLMANRGKRV-AKTQIFSAIYGLF-DEAVEENVVESHISKLRKKLRNKLGF 207 ++E +L + AN KRV K I ++G F D++ + V HI LRKK++ G Sbjct: 151 TKKEYEMLLFF-ANNAKRVLTKQNIAEHLWGDFIDQSDSFDFVYQHIKNLRKKIQKATGS 209 Query: 208 DPVDSKRFLGYSI 220 D +++ +GY + Sbjct: 210 DLLETVYGVGYKL 222 >gi|217978668|ref|YP_002362815.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] gi|217504044|gb|ACK51453.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] Length = 233 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 2/142 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L R+ + P++ +S + +++ + G DD + KP H E++AR+ AI RR K Sbjct: 63 LRRLRVGKVKTPILILSGFAAIEDKVKGLGFGADDYLTKPFHKDELVARIHAIVRRSKGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + T + V D + EV G L +E ++LE L +G + K + +YG Sbjct: 123 AQSVIATSDLIVNLDQKTVEVDGARVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYGGM 182 Query: 182 DEAVEENVVESHISKLRKKLRN 203 DE E +++ I KLRKKL N Sbjct: 183 DEP-ELKIIDVFICKLRKKLAN 203 >gi|28210358|ref|NP_781302.1| subtilin biosynthesis regulatory protein spaR [Clostridium tetani E88] gi|28202795|gb|AAO35239.1| subtilin biosynthesis regulatory protein spaR [Clostridium tetani E88] Length = 220 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 3/157 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L + IR P+I ++ Q + G DD ++KP E+ ARVAA RR + Sbjct: 62 LCKEIRNLVDCPIIFLTAKTMEQDIVMGLSLGGDDYISKPFGISELRARVAAHLRREHRE 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N ++ ++ ++ P + E I EYL N G+ +K +I+ +YG + Sbjct: 122 KQNAFSISNVKFNITSKEAYYNEKLIPFTKSEYNICEYLAMNHGQVFSKDRIYEKVYGTY 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +VE HI +R KL+N +G +P+++ +GY Sbjct: 182 GNSDTTAIVE-HIKNIRNKLKN-MGINPIETVWGIGY 216 >gi|294341402|emb|CAZ89819.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As] Length = 239 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 5/162 (3%) Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 E+ R +RA + VP++ ++ S++ + D G DD + KP +E+ ARV A+ RR + Sbjct: 61 EVLRKLRARGATVPVLILTAADSVEDKVRGLDLGADDYMAKPFALQELEARVRALSRRGM 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + GP+ GR + G V L RE +LE L+ G+ V+K Q+ + Sbjct: 121 GGASAVIQHGPLHYDITGRVVTLDGHVVELSARELTLLEVLLQRAGRLVSKDQLVEHLC- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ E V N +E ++ +LRKK+ ++G + + R LGY ++ Sbjct: 180 VWGEEVSTNAIEVYVHRLRKKI--EVGPVRIATVRGLGYCLE 219 >gi|268610405|ref|ZP_06144132.1| two component transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 224 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 104/219 (47%), Gaps = 5/219 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIGKGEK 59 M L++D +++ + + G +GF + EF L+ + E V G Sbjct: 1 MIYLLEDDGGIRNFVLYALNNSGFEAKGFETPSEFYSALEGALPELVLLDRMLPEEDGMT 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 VL+ R +++P+I ++ S ++ D G DD + KP E+++R+ A+ RR Sbjct: 61 VLKKLRNSPETAELPVIMLTALDSEADKVEGLDGGADDYIAKPFGTMELISRIKALLRR- 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ + G + ++ + GE L +E +L YLM ++G +++ ++ I+G Sbjct: 120 SGSSEKLTAGELCIYPVKHEVFAAGEPVVLTLKEYDMLLYLMRHKGTVISRDELLKKIWG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +D + E V+ HI LR KL + D + + R +GY Sbjct: 180 -YDFSGESRTVDVHIRTLRSKL--GVCGDVIQTIRGVGY 215 >gi|150021690|ref|YP_001307044.1| two component transcriptional regulator [Thermosipho melanesiensis BI429] gi|149794211|gb|ABR31659.1| two component transcriptional regulator, winged helix family [Thermosipho melanesiensis BI429] Length = 222 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 8/195 (4%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQT 86 E N+ E + L S R D+ ++ L G ELP I + ++ +I +S + Sbjct: 30 EAENNFEMRKKL-SKERYDLVLLDIML-PDGLSTDELPEIKVLYPKLGIIIVSAKDNDSD 87 Query: 87 TLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV 146 + + G DD V KP + RE++AR+ A +RR+ + G +++F D ++ ++ Sbjct: 88 KIYGLEIGADDYVTKPFNPREVVARIKAFFRRISGEREVIKFGQLQIFCDDYLVKLNDKI 147 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 +E IL L N ++ +I ++ DE + + VV+ HIS +RNKLG Sbjct: 148 IDFTAKEFEILCLLAKNPNVVFSRERILDIVWK--DEFISDRVVDVHIS----NIRNKLG 201 Query: 207 FDPVDSKRFLGYSID 221 D + + R +GY + Sbjct: 202 KDSIITVRGVGYKFN 216 >gi|115375150|ref|ZP_01462417.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|310823133|ref|YP_003955491.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|115367801|gb|EAU66769.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|309396205|gb|ADO73664.1| Two-component response regulator [Stigmatella aurantiaca DW4/3-1] Length = 240 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 10/167 (5%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L R++R AH + P + ++ S+ + +SG DD + KP E+ AR+ ++ RR Sbjct: 75 LTLLRMLREAHIRTPTLFLTAMGSIDDRVKGLESGGDDYLVKPFAFSELYARICSLGRRP 134 Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + + R G+ L E R+LEYL+ + G+ V +T + + Sbjct: 135 PLQDVQTVFTLADLEMDLIKRTVTRSGKTLDLQPTEFRLLEYLLRHAGRAVTRTMLLEHV 194 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221 + FD + N+VE+HIS+LR KL GF P + + R +GY ID Sbjct: 195 WNFHFDP--KTNIVETHISRLRAKLDR--GFTPELIHTVRGVGYKID 237 >gi|160892783|ref|ZP_02073573.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50] gi|156865824|gb|EDO59255.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50] Length = 233 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 76/145 (52%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E + IR SQVP+I ++ + L F+ G+D+ + KP + ++ARV AI RR Sbjct: 65 ETCKEIRKFSQVPIIMLTAKSDERDELLGFELGIDEYITKPFSPKILVARVEAILRRTSD 124 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ G I + + GE L +E +L Y M N+G +++ +I + ++ Sbjct: 125 VPADSVISAGGITMDLAAHIVTIDGEPIELSYKEFELLNYFMVNKGVALSREKILNNVWN 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR KL++K Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLKDK 208 >gi|312142756|ref|YP_003994202.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] gi|311903407|gb|ADQ13848.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] Length = 231 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 19/228 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEK 59 ++IDD D +I DD ++ EGF++ + E+ L+ E V + ++ E Sbjct: 7 LIIDD-----DPHIREILDDYLNFEGFDAFLAEDTEKGLKILQEEKVDILILDIMLPDED 61 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 E + IR +P+I +S + + G DD + KP RE++AR+ A+ RR Sbjct: 62 GWEFCQKIRPEYDLPIIFLSAKDKSVDKITGLELGADDYITKPFSPREVVARIKAVLRRY 121 Query: 120 KVSNNRAETGPIRVFSD---GRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N AE I + + R+ + QGE L +E +L +L N K + ++ Sbjct: 122 ---NKAAENAKIIKYGELIINREQHLVSFQGEKIELTPKEFSLLWHLAENPKKVFRRERL 178 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++G +D + V++HI LRKKL +K + V++ +GY D Sbjct: 179 LKAVWG-YDYYGDVRTVDTHIKSLRKKLGDKAA-EAVETVWGVGYKFD 224 >gi|310828577|ref|YP_003960934.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308740311|gb|ADO37971.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 229 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 17/229 (7%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++ DDRAL + ++L D +L F+ E E L + + + G G Sbjct: 8 ILIVEDDRALNQGLVLSLKNDSYTTLSAFSIKEAREKLTDNTFDLIVLDVNLPDGNG--- 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 LEL + IR S VP+I ++ + ++G DD + KP + AR+AA+ RR Sbjct: 65 LELCQEIRRRSAVPIIFLTANDMEMDVVIGLENGGDDYITKPFSLAILRARIAALLRRSQ 124 Query: 120 KVSNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K NR + VF G D L + E+++L+ L+ANRG V + + Sbjct: 125 KERQNRIKIDAFTFDFDQMVFLKGEDE------LTLSKTEQKLLKLLLANRGTTVTRDLL 178 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G + V+EN + I +LR KL + PV + G W Sbjct: 179 LEKVWGDSMDFVDENALSVTIRRLRSKLEDN-SSKPVYIQTVYGLGYTW 226 >gi|296170645|ref|ZP_06852220.1| two component system response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894634|gb|EFG74368.1| two component system response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 236 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 6/187 (3%) Query: 34 FEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDS 93 EE L+ R D+ ++ L G+ L +IR +V ++ I+ L+ L D Sbjct: 52 LEEALEG-LRPDLVVLDVMLPGR--DGFALIDVIRDWGEVGIVLITARDGLEDRLRGLDG 108 Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153 G DD V KP E+++RV A+ RR + G + + +D G L E Sbjct: 109 GADDYVVKPFELAELVSRVGAVLRRRGRLPQVIQFGDLMLDTDAGVAARSGRRLDLTATE 168 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 R+L +L+ RG+ V+ QI +A++G +A + N+V+ ++S LR+KL G + + Sbjct: 169 LRLLSFLVEQRGRIVSAGQILNAVWGY--DAYDPNLVQVYVSGLRRKLEAH-GPRILHTV 225 Query: 214 RFLGYSI 220 R +GY + Sbjct: 226 RGIGYRL 232 >gi|237751683|ref|ZP_04582163.1| response regulator ompR [Helicobacter bilis ATCC 43879] gi|229373049|gb|EEO23440.1| response regulator ompR [Helicobacter bilis ATCC 43879] Length = 220 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 92/182 (50%), Gaps = 10/182 (5%) Query: 28 GFNSLEFEE---WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84 GF +L + L+ A++D+ A+ L+ EL IR+H+Q+P+I S + Sbjct: 25 GFETLCLSDVSMILEKIAQDDIDAVILELLDHEIDGFELCGKIRSHTQIPIIISSKLTHI 84 Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG 144 + F+ G+DD + KP E++AR+ A+ RR + + G + + + R ++ Sbjct: 85 SDKIRAFELGIDDYMTKPYEAVELIARIKALLRR--IEPRKRVFGALNIDAKRRTIKLYN 142 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 E L E IL +L+ NR + V++ +I I + D+ + +++HI + LRNK Sbjct: 143 EDIELTNTEFDILLFLVDNRLQPVSRERIAHTINAIHDDTGLRS-IDTHI----RNLRNK 197 Query: 205 LG 206 LG Sbjct: 198 LG 199 >gi|239617306|ref|YP_002940628.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506137|gb|ACR79624.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 221 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 73/131 (55%), Gaps = 2/131 (1%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 +++P+I ++ L+ + SG DD + KP H E+LAR+ A+ RR K + + G Sbjct: 74 TELPVIMLTARGELEDRVRGLKSGADDYIVKPFHIEELLARLEAVLRR-KGYSEKILYGN 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I + R+ +V GE L R E +L+ L+ N G ++K ++ ++G +E NVV Sbjct: 133 IEMNLSSREVKVNGEPVELSRTEFDLLKVLLTNAGIVMSKDRLLELVWG-TEEWGNPNVV 191 Query: 191 ESHISKLRKKL 201 E +I+ LRKKL Sbjct: 192 EVYINYLRKKL 202 >gi|75675380|ref|YP_317801.1| two component transcriptional regulatory protein [Nitrobacter winogradskyi Nb-255] gi|74420250|gb|ABA04449.1| two component transcriptional regulator, winged helix family [Nitrobacter winogradskyi Nb-255] Length = 223 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 82/164 (50%), Gaps = 10/164 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VLE R R +P++ ++ + FD+G DD V KP H EILAR+ A+ Sbjct: 59 GISVLEAWR--RGGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARMRALL 116 Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR +++ GP+ + + V G + E R+L YLM + G+ V++T++ Sbjct: 117 RRSTGHAHSELTCGPVTLDTRTGRVSVGGNPVKMTSHEYRLLAYLMHHIGRVVSRTELVE 176 Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y FD + N +E + ++RK KL D + + R LGY Sbjct: 177 HLYDQDFDR--DSNTIEVFVGRIRK----KLDVDIIQTVRGLGY 214 >gi|73748088|ref|YP_307327.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|289432114|ref|YP_003461987.1| transcriptional regulator [Dehalococcoides sp. GT] gi|73659804|emb|CAI82411.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|288945834|gb|ADC73531.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. GT] Length = 230 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 7/147 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+IRA S VP++ ++ S ++ ++G DD ++KP +E+LAR+ A+ RR + Sbjct: 63 FELCRLIRAESSVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMKALLRRSQ 122 Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N+ AE G + +F + G +E + +L+ NR + ++ Q+ Sbjct: 123 MQNSPAEPAGGLKIGDLEIFIERHLVIRNGVALDFSPKEFDLFSFLVQNRYRVFSREQLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++G +D V+ HIS LR+K+ Sbjct: 183 EKVWG-YDYPGGTRTVDVHISWLRQKI 208 >gi|154499728|ref|ZP_02037766.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC 29799] gi|150271326|gb|EDM98583.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC 29799] Length = 224 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 106/221 (47%), Gaps = 26/221 (11%) Query: 8 RALVKD-GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPR 65 RA ++D GY DG LEG N +F E D+ ++ L G V E Sbjct: 19 RAFLEDAGYTVFVAGDG--LEGVN--KFHE-----KNPDLVLLDLMLPKMNGFTVCE--- 66 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 I+R S+ P+I ++ + L FD+ DD + KP ++ + A+ RR++ + Sbjct: 67 ILRKESRTPIIMLTALDDDDSQLKGFDALADDYITKPFSMPVVMKHIEAVLRRIEPA--A 124 Query: 126 AETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +E IR + +D +V G L RE IL++L+ N+G+ + + I+ Sbjct: 125 SEPSVIRYKAHVLDADSFSVQVNGVPVSLTTREFEILKFLLENQGRVFTRDNLLDRIWD- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D +E ++ +HI +RK KLG D +++ R +GY I+ Sbjct: 184 YDYVGDEKIINTHIKNIRK----KLGVDYIETIRGVGYKIE 220 >gi|170738424|ref|YP_001767079.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168192698|gb|ACA14645.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 225 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIR 132 P++ ++ + + D G DD + KP RE+ ARV A+ RR ++N G + Sbjct: 74 PVLVLTARSEVDDRVGALDLGADDYLVKPFDFRELEARVRALLRRHSGHADNAIAVGNLV 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + R V G+ L RRE ++E L A G+ K ++ + F+E EN VE Sbjct: 134 LDRAARSARVAGQPLDLTRREWTLMEILAARPGRIFGKAELLERVTS-FEEDASENAVEQ 192 Query: 193 HISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222 +++LR+KL + G +P + + R LGY + W Sbjct: 193 IVARLRRKL-AQAGAEPEIRTLRGLGYQVVW 222 >gi|295704202|ref|YP_003597277.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294801861|gb|ADF38927.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 224 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 5/160 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + I+ + +P++ ++ L FD G DD V KP +E++ARV A+ RR +V Sbjct: 62 ELTKEIKEYFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLRRYRV 121 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +NN G I++ + LP +E +L L+++ GK + Q+ I+G Sbjct: 122 EANNVIYMGNIKLDRTKLEMSAGETSEQLPLKEFELLFTLVSSPGKIFTRDQLIQLIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGY 218 +D EE V+ HI +LR++L + +G + + + R LGY Sbjct: 181 YDYEGEERTVDVHIKRLRERLNHMKNVGME-IKTIRGLGY 219 >gi|157165503|ref|YP_001467191.1| response regulator receiver domain-containing protein [Campylobacter concisus 13826] gi|112801411|gb|EAT98755.1| transcriptional activator protein CopR [Campylobacter concisus 13826] Length = 219 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 9/161 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R A P++ ++ + + D+G DD + KP +E+LARV + RR S Sbjct: 63 LQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRR--NS 120 Query: 123 NNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N A G +++ + E GE L +E ILE+LM N+G+ + + QI ++ Sbjct: 121 GNVASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD NV++ I +RKKL + + +KR LGY + Sbjct: 181 -FDYTGGSNVIDVLIKNIRKKLGE---CEAIQTKRGLGYVV 217 >gi|310288067|ref|YP_003939326.1| Two-component response regulator regX [Bifidobacterium bifidum S17] gi|309252004|gb|ADO53752.1| Two-component response regulator regX [Bifidobacterium bifidum S17] Length = 234 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 19/173 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + + Sbjct: 63 LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQGA 122 Query: 123 NNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + G I + V+GE P +E +LEYLM N+G+ + + Q+ Sbjct: 123 VEASGAVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221 I+G D + ++ H+ K++R+K+ DP + + R LGY ID Sbjct: 183 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPQYLTTVRGLGYKID 230 >gi|238650537|ref|YP_002916389.1| transcriptional activator protein czcR [Rickettsia peacockii str. Rustic] gi|238624635|gb|ACR47341.1| transcriptional activator protein czcR [Rickettsia peacockii str. Rustic] Length = 237 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A + P++ +S + F SG DD + KP E++AR+ AI RR S Sbjct: 63 LLRLRAAKIKTPILILSSLTDTYQKITGFSSGADDYLTKPFVREELIARIKAIVRR---S 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + + + D R EV G+ L +E ILE L+ RG + K + +Y Sbjct: 120 KGHAASVFRFDKVSINLDTRSVEVDGKKVHLTNKEYAILELLVLRRGTILTKEMFLNHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 DE E +++ I KLRKKL + G D +D+ GY + Sbjct: 180 SSVDEP-EMKIIDVFICKLRKKLSDAAGGRDYIDTVWGRGYML 221 >gi|27378232|ref|NP_769761.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27351379|dbj|BAC48386.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 224 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 8/130 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 FD+G DD V KP H E+LAR+ A+ RR + + GP+ + + V G + Sbjct: 91 FDAGADDYVAKPFHLEEVLARIRALLRRSTGHAQSELSCGPVTLDTRTGRVSVSGNPVKM 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V++T++ +Y FD + N +E + ++RK KL D Sbjct: 151 TSHEYRLLAYLMHHSGRVVSRTELVEHLYDQDFDR--DSNTIEVFVGRIRK----KLDVD 204 Query: 209 PVDSKRFLGY 218 + + R LGY Sbjct: 205 IIQTVRGLGY 214 >gi|320546797|ref|ZP_08041105.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] gi|320448543|gb|EFW89278.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] Length = 224 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K +NN + Sbjct: 73 TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNNNTLSYHEL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + V GE L +E +L Y + N+ + K+QIF I+G FD +VVE Sbjct: 133 TADTSTNTTTVNGEKVELLGKEFDLLVYFLQNQNVILPKSQIFDRIWG-FDSDTTISVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ D + + R +GY Sbjct: 192 VYVSKIRKKLKGTSFADSLQTLRSVGY 218 >gi|224283668|ref|ZP_03646990.1| Putative response regulator [Bifidobacterium bifidum NCIMB 41171] gi|313140824|ref|ZP_07803017.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|313133334|gb|EFR50951.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 234 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 19/173 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + + Sbjct: 63 LCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQGA 122 Query: 123 NNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + G I + V+GE P +E +LEYLM N+G+ + + Q+ Sbjct: 123 VEASGVVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 I+G D + ++ H+ K++R+K+ DP + R LGY ID Sbjct: 183 IDRIWG-SDYVGDTKTLDVHV----KRVRSKIEEDPAHPRYLTTVRGLGYKID 230 >gi|307299746|ref|ZP_07579539.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306914612|gb|EFN45005.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 229 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 106/226 (46%), Gaps = 30/226 (13%) Query: 9 ALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRI 66 AL ++G+ L G +LE S +F D++ ++ L G G EL + Sbjct: 20 ALTQEGWATTLAGSVSYALEMLESGDF----------DLALLDVMLPDGNG---FELCKK 66 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----S 122 IR S++P+I ++ + +SG DD V KP RE+++R+ A RR++ Sbjct: 67 IRERSEMPIIFLTARDEEVNIVMGLESGADDYVTKPFRLRELISRIKANARRIQKRSVEE 126 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++GP+ + + G+ L E +IL LM N G + + ++ ++ + Sbjct: 127 GGSLKSGPLELNTSKLRAYRSGKEIILTPTEFKILRTLMENEGIVLGRDRLLQKVWDVDG 186 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSIDWN 223 E +++N + HI KLR+K+ DP +++ R LGY WN Sbjct: 187 EFIDDNTLSVHIRKLREKVEE----DPSKPKLIETLRGLGYR--WN 226 >gi|302335659|ref|YP_003800866.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301319499|gb|ADK67986.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 228 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 2/158 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSN 123 R+ R ++ +P++ ++ S ++ D+G DD + KP E+LAR+ A+ RR V Sbjct: 65 RLRRENNSIPVLMLTARTSTSDKVEGLDAGADDYMTKPFESPELLARLRALTRRQGDVVI 124 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + + D G L +E +L LM++ + ++K + + ++G E Sbjct: 125 DEVSFADLTLDLATHDLSCDGHTVHLSGKEFEVLRMLMSSTARVISKQDLLTRVWGTDGE 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A EN VE++IS LRKK+ + + + R LGY ++ Sbjct: 185 A-SENSVEAYISFLRKKISHVHSTVQITTLRMLGYRLE 221 >gi|24376120|ref|NP_720163.1| DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24351154|gb|AAN57607.1|AE015896_5 DNA-binding response regulator [Shewanella oneidensis MR-1] Length = 231 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 8/160 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI + P++ ++ S Q ++ D+G DD + KP H E++AR+ A+ RR S Sbjct: 65 RIRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR---SAG 121 Query: 125 RAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +A GP + + + +GE+ L E ++ E M ++G+ +KT + IY Sbjct: 122 KASPIITNGPFSLNTSSLEVRKEGELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYDQ 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D ++ NV+E I +LRKKL ++ +++ R GY + Sbjct: 182 -DFDLDSNVIEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220 >gi|325291259|ref|YP_004267440.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324966660|gb|ADY57439.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 228 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +E+ R +R S VP+I ++ + + DSG DD + K E+LAR+ I +R Sbjct: 62 IEVCRRVRKESDVPIIMLTAKDDVSDKVMGLDSGADDYMTKSFAIEELLARIRVILKRKS 121 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + S+ G + + D +G+ L ++E +L+YLM N+G +++ +I + Sbjct: 122 KKEGSSAVIAAGRLVLLRDEHRVTFEGKEISLSKKEFELLKYLMENKGIVLSREKILDHV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +G +D + NV + +I LR K+ K + + R +GY Sbjct: 182 WG-YDYYGDTNVTDVYIKYLRNKIDQKFDVRFIHTVRGVGY 221 >gi|302875761|ref|YP_003844394.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307689195|ref|ZP_07631641.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302578618|gb|ADL52630.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 224 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/213 (26%), Positives = 100/213 (46%), Gaps = 15/213 (7%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR- 68 L K+GY A+ +DG E+ L+ +E V + + ++ EL + +R Sbjct: 21 LTKNGYKAISAEDG-----------EKALEILEKEYVDLVISDIMMPNMDGFELTKALRE 69 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A+ +P++ I+ + F G DD + KP+ E++ RV A+ RR ++ N R +T Sbjct: 70 ANFNLPILMITAKETFADKQKGFLVGTDDYMVKPVDVNEMVLRVGALLRRAQIINERKQT 129 Query: 129 GPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 V D GE LP++E +L L++ + Q+ I+G+ D E Sbjct: 130 VGNSVLEYDSLTVYQNGEAIVLPQKEFYLLYKLVSFPNHIFTRQQLMDEIWGM-DSDTEA 188 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+ HI++LR + + F+ + + R LGY + Sbjct: 189 RTVDVHINRLRDRFKENQDFE-IMTVRGLGYKV 220 >gi|228476733|ref|ZP_04061399.1| DNA-binding response regulator, OmpR family [Streptococcus salivarius SK126] gi|228251604|gb|EEK10705.1| DNA-binding response regulator, OmpR family [Streptococcus salivarius SK126] Length = 219 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 5/164 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L+ IR P++ I+ + G DD + KP +E+ ARVAA RR Sbjct: 60 LQFCHEIRNQVDCPILFITAKTQEADIVQGLTYGADDYICKPFGVKELQARVAAHLRREH 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +++ G I+ ++ V+ ++ L + E I ++L N+G+ +K QI++ +YG Sbjct: 120 RERHHKLLIGNIQFDLSAQELYVENQLLDLTKSEYSICQFLAENKGQVFSKVQIYTHLYG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D+ V E HI +R KL++ +G +P+++ +GY W+ Sbjct: 180 YEDKGSPTAVAE-HIKNIRAKLKD-VGQNPIETVWGIGYK--WH 219 >gi|225572449|ref|ZP_03781313.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM 10507] gi|225040086|gb|EEG50332.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM 10507] Length = 226 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 77/145 (53%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +S+VP+I ++ + L F+ GVD+ ++KP + ++ARV AI RR Sbjct: 65 EVCREIRKNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTGQ 124 Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N G I V V+G L +E +L Y + N+G +++ +I ++++ Sbjct: 125 TNKEDVLSLGGIVVDKAAHQVTVEGSPIELSFKEFELLSYFIENQGIALSREKILNSVWN 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR KL K Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGEK 208 >gi|254486555|ref|ZP_05099760.1| two component response regulator [Roseobacter sp. GAI101] gi|214043424|gb|EEB84062.1| two component response regulator [Roseobacter sp. GAI101] Length = 225 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 22/230 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLE----GFNSLEFEEWLQSSAREDVSAIEAFLIG-K 56 +L +D + D +A ++G S++ G ++L + + D++ ++ L G Sbjct: 3 ILLAEDDPKIADYIVAGLSENGHSVDHVSDGRDALSYCLYNDC----DMAILDRMLPGMD 58 Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL+ R + +P++ ++ ++ ++ +G DD + KP H E+ AR+ AI Sbjct: 59 GLSVLKALRA--SKKSLPVLFLTALGQVEDRVEGLAAGGDDYLTKPFHFSELTARIDAIV 116 Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR S AE P D R QG + L +E ILE LM N G+ V + Sbjct: 117 RR--KSETTAE--PSLTVHDLTLDLLARTATRQGNLIELHNKEFSILEILMRNSGRIVTR 172 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 TQ+ ++ F+ VVE+H+S+LR K+ + + R GYS+ Sbjct: 173 TQLLERVWN-FNFEPNTTVVETHLSRLRAKIDKPFDTPLIHTIRNTGYSM 221 >gi|160936956|ref|ZP_02084320.1| hypothetical protein CLOBOL_01845 [Clostridium bolteae ATCC BAA-613] gi|158440146|gb|EDP17893.1| hypothetical protein CLOBOL_01845 [Clostridium bolteae ATCC BAA-613] Length = 221 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 15/138 (10%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSN 123 Q+P+I ++ L + + G DD + KP ++LARV A+ RR L V N Sbjct: 70 CQMPIIVVTALDDLSSKVQCLQVGADDYITKPFDSMDLLARVGAVLRRCRRRPMSLNVRN 129 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + RV DG++ E+ + F L L YL +N K + + +I S ++G ++ Sbjct: 130 ISVDPDQHRVLKDGKEIELTPKEFDL-------LYYLCSNCDKVLTRKEILSDVWG-YNY 181 Query: 184 AVEENVVESHISKLRKKL 201 E V+ HI +LRKKL Sbjct: 182 VGETRTVDIHIQRLRKKL 199 >gi|72160661|ref|YP_288318.1| response regulator receiver [Thermobifida fusca YX] gi|71914393|gb|AAZ54295.1| response regulator receiver [Thermobifida fusca YX] Length = 241 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 108/226 (47%), Gaps = 12/226 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++IDD ++D A G + S E L S R D+ ++ L G V Sbjct: 13 LVIDDEPNIRDLVQAALRFHGFEVSTAGSGEEGLALARSERPDLILLDVLLPDISGFDVC 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R+ VP+I ++ + T+ G DD V KP ++ARV A+ RR+K Sbjct: 73 R--RLRDEDDDVPVIYLTARDTPSDTVTGLSLGGDDYVTKPFSVEALIARVRALLRRVKR 130 Query: 122 SNNRAET--GPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A++ G +RV D + G L E R+L Y+M N G+ + + Q+ Sbjct: 131 DPNSAQSSDGVLRVADLELDEKTWTVRRGGVPIDLSPTEFRLLAYMMHNAGRVLTRAQLL 190 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D A + +VE+++S LR+KL + G + + ++R +GY++ Sbjct: 191 ENVWG-WDYAGQSQIVETYVSYLRRKL-DPFGPNLIHTQRGVGYAL 234 >gi|25026981|ref|NP_737035.1| putative response regulator [Corynebacterium efficiens YS-314] gi|259508536|ref|ZP_05751436.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23492261|dbj|BAC17235.1| putative response regulator [Corynebacterium efficiens YS-314] gi|259163886|gb|EEW48440.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 232 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 14/188 (7%) Query: 27 EGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF+++ + L +R D+ + L+ G ++ + +R S VP+I ++ S Sbjct: 24 EGFDTIIAGDGPTALVEFSRNDIDIVLLDLMLPGMSGTDVCKELRLVSNVPVIMVTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----------ETGPIRV 133 + + G DD V KP RE++AR+ A+ RR + A E G +R+ Sbjct: 84 EIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGDTEAEAAEDDTDDQILEGGRVRM 143 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D V G+ +P +E +LEYL+ N G+ + + Q+ I+G D + ++ H Sbjct: 144 DVDSHTVTVDGKAVNMPLKEFDLLEYLLRNAGRVLTRGQLIDRIWG-ADYVGDTKTLDVH 202 Query: 194 ISKLRKKL 201 + +LR K+ Sbjct: 203 VKRLRSKI 210 >gi|329961374|ref|ZP_08299497.1| putative response regulator ArlR [Bacteroides fluxus YIT 12057] gi|328531851|gb|EGF58674.1| putative response regulator ArlR [Bacteroides fluxus YIT 12057] Length = 225 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 85/167 (50%), Gaps = 8/167 (4%) Query: 55 GKGEKVL-ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G G +L EL R+ R+ S ++ IS SL +D + G DD + KP H E+ ARV Sbjct: 57 GSGLDLLRELKRLHRSDS---VLIISAKDSLDDKVDGLELGADDYLTKPFHLAELNARVK 113 Query: 114 AIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ RR + + + T G + ++ D R EV G L R+E +L Y + N + + K Sbjct: 114 SLIRRRQTQGDVSVTIGNLLLYPDKRQAEVNGAPLQLNRKEFDLLYYFVVNPDRVINKMS 173 Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +++G D+A + + S + LRKKL KL V+ K G+ Sbjct: 174 LAESVWGDNIDQADSLDFIYSQVKNLRKKL--KLADATVELKAVYGF 218 >gi|325263497|ref|ZP_08130231.1| DNA-binding response regulator SrrA [Clostridium sp. D5] gi|324031206|gb|EGB92487.1| DNA-binding response regulator SrrA [Clostridium sp. D5] Length = 226 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 77/145 (53%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR HS+VP+I ++ + L FD GVD+ ++KP + ++ARV AI RR + Sbjct: 65 QVCREIREHSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRRTQS 124 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + + G I + ++ L +E +L Y + N+G +++ +I + ++ Sbjct: 125 TESGDVMDAGGIMIDRAAHIVKIGERTIDLSYKEFELLSYFVENQGIALSREKILNNVWN 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR KL K Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGEK 208 >gi|315612769|ref|ZP_07887680.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] gi|315314879|gb|EFU62920.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] Length = 218 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/219 (23%), Positives = 105/219 (47%), Gaps = 6/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++G D G E + + +E L+ + +V+ + + LE Sbjct: 4 LIVEDEEMIREGISDYLTDCG--YETIEAADGQEALEKFSSHEVALVLLDIQMPKLNGLE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR SQVP++ ++ + + + F S D + KP + RV AI++R + Sbjct: 62 VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYDT 121 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +V + + G+ + +E IL+YL+ N G+ + ++QI A++ D Sbjct: 122 GRVFSYKDTKVDFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKATD 181 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E + V++ +I K+LR KL D + + R +GY ++ Sbjct: 182 EVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216 >gi|218508769|ref|ZP_03506647.1| probable two-component response regulator protein [Rhizobium etli Brasil 5] Length = 412 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 78/147 (53%), Gaps = 2/147 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ ++ S++P+I ++ SL + DSG DD + KP E+ AR+ A+ RR + Sbjct: 63 LKRLRQSGSKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQDR 122 Query: 123 NNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + T +FS G R V GE L RE +LE L+ G V+KT + +++G F Sbjct: 123 ASSEITVGDLLFSGGTRQFFVAGEPLQLTPREYAVLEQLVMKLGTTVSKTALSESVFG-F 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFD 208 D+ + + +E +I + K+ R + G D Sbjct: 182 DDEADPSAIEIYIHRAAKEAREQFGSD 208 >gi|197302214|ref|ZP_03167273.1| hypothetical protein RUMLAC_00941 [Ruminococcus lactaris ATCC 29176] gi|197298645|gb|EDY33186.1| hypothetical protein RUMLAC_00941 [Ruminococcus lactaris ATCC 29176] Length = 236 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 3/153 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127 A Q+P++ I+ S F SG DD + KP++ E++ RV A+ RR ++ N ++ Sbjct: 83 AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G D E LP++E +L L A+ G+ K Q+ ++G EA ++ Sbjct: 143 IGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYATEA-DQ 201 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +E HI ++R++ ++ F+ V + R +GY + Sbjct: 202 HTIEVHIGRIRERFKDNPDFEIV-TMRGIGYKV 233 >gi|167746364|ref|ZP_02418491.1| hypothetical protein ANACAC_01073 [Anaerostipes caccae DSM 14662] gi|167654357|gb|EDR98486.1| hypothetical protein ANACAC_01073 [Anaerostipes caccae DSM 14662] Length = 227 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 82/159 (51%), Gaps = 1/159 (0%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP++ ++ L+ L G D+ + KP H + AR+ + RR + Sbjct: 62 EICRSIRKISTVPVLVLTSRDQLKDELHALKLGADEYLTKPCHKDRLTARILNLLRRYED 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + AE +R+ + G+ LP + +I+E L+ + G V K+ + ++G Sbjct: 122 RDRFAEIQGVRLDRQTFTVYMNGQSAVLPENQGKIMELLLLHAGDTVTKSMLSERLWG-T 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++EN ++ ++++L+K +R ++++R +GY + Sbjct: 181 TEYIDENALQVNMTRLKKTIRKLHIPYRIETRRGIGYCL 219 >gi|125623601|ref|YP_001032084.1| two-component system regulator llrF [Lactococcus lactis subsp. cremoris MG1363] gi|4104695|gb|AAD02113.1| putative response regulator [Lactococcus lactis subsp. cremoris MG1363] gi|124492409|emb|CAL97351.1| two-component system regulator llrF [Lactococcus lactis subsp. cremoris MG1363] Length = 222 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 5/149 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETG 129 P++ ++ SL + FD G DD + KP + E+ AR+ A+ +R L+ SN + G Sbjct: 73 TPVLIMTAKESLDDKMHGFDIGADDYLTKPFYLDELKARIQALLKRTGKLEDSNGLS-YG 131 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 IR+ + V + L +E ++ YLM N+ + K QIF I+G +D V Sbjct: 132 NIRLNLSNKSTLVDDQPVDLIGKEFDLVVYLMQNQNVILPKEQIFDRIWG-YDSDTTVTV 190 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VE ++SK+RKKL++ + + + R +GY Sbjct: 191 VEVYMSKIRKKLKDTEFVNNLSTLRNVGY 219 >gi|330504485|ref|YP_004381354.1| DNA-binding response regulator [Pseudomonas mendocina NK-01] gi|328918771|gb|AEB59602.1| DNA-binding response regulator [Pseudomonas mendocina NK-01] Length = 218 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 27/224 (12%) Query: 16 IALFGDDGVSLEGF-NSLEFE----EWLQSSAREDVSAIEAFLIGKGEKV---LELPRI- 66 I L DD EG +L+ E +WLQ A SA+ A E L LPR+ Sbjct: 3 ILLVEDDQALGEGIRTALKPEGYTVDWLQDGA----SALHALSHESFELAILDLGLPRMD 58 Query: 67 ---IRAHSQ-----VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + H Q VP++ ++ + + D+G DD + KP E+ AR+ A+ RR Sbjct: 59 GLQVLKHLQAAANPVPVLVLTARDATSDRIAGLDAGADDYLIKPFDVAELKARLRALLRR 118 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E IR+ + E QG+ LPR+E +L L+ G+ + + ++ A+ Sbjct: 119 SFQRPQPALEYRGIRLDPASQVVEYQGQTINLPRKEFLLLHELLIQPGRVLTRDKLQQAL 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 YG +DE VE N +E H+ LRKK +L + + R +GY +D Sbjct: 179 YG-WDEEVESNALEVHVHHLRKKFFPEL----IRTVRGVGYLVD 217 >gi|319440749|ref|ZP_07989905.1| two-component system response regulator [Corynebacterium variabile DSM 44702] Length = 240 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 20/179 (11%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G E+ R +R+ S VP+I ++ S + + G DD V KP RE++AR+ Sbjct: 66 LMLPGMSGTEVCRQLRSTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARI 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGR---DPE-----VQGEVFPLPRRERRILEYLMANR 164 A+ RR + N + V S GR D E V GE LP +E +LEYL+ N Sbjct: 126 RAVLRRGGEAENAEDA--TSVISGGRVTMDIERHVVTVAGEEVALPLKEFDLLEYLLRNA 183 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGY 218 G+ + + Q+ I+G D + ++ H+ K+LR K+ DP + R LGY Sbjct: 184 GRVLTRAQLIDRIWG-SDYVGDTKTLDVHV----KRLRGKIEEDPSSPVQLLTVRGLGY 237 >gi|254695359|ref|ZP_05157187.1| DNA-binding response regulator [Brucella abortus bv. 3 str. Tulya] gi|261215731|ref|ZP_05930012.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260917338|gb|EEX84199.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] Length = 225 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 104/222 (46%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +LI+D ++ +G ++ + L+ SAR D+ ++ L G+G Sbjct: 3 IILIEDDPILGAAVRDHIAAEGHCVDWVSRLDTAHDYMESARYDLVLLDLMLPDGQG--- 59 Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R +R P+I ++ + + ++G DD + KP E+ AR+ A+ RR Sbjct: 60 LSFLRDLRTKGCSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRY 119 Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N E G +++ + G L RE +LE + + G+ ++K Q+ +Y Sbjct: 120 SGNPNPLIEIGGLQIDLAAKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F+ VE N +E H+S+LRK KLG +++ R +GY + Sbjct: 180 S-FNTEVESNTMEVHVSRLRK----KLGHAIIETVRGIGYRL 216 >gi|126740175|ref|ZP_01755864.1| two-component response regulator [Roseobacter sp. SK209-2-6] gi|126718630|gb|EBA15343.1| two-component response regulator [Roseobacter sp. SK209-2-6] Length = 234 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L L + +R A ++ P I ++ + ++ ++G DD + KP E+ ARVAA+ RR Sbjct: 70 LSLIKTLRGAGNRTPAIMLTAVSGVNDRIEGLEAGADDYLVKPFAFGELSARVAALARRP 129 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 L+ R G + + G+ PL RE +LE+L+ +G+ +T + A+ Sbjct: 130 GLQQQETRLCVGDLEMDLVQHKVTRAGQEIPLLPREFTLLEHLLRRKGRVQTRTMLLEAV 189 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + FD + NVVE+HIS+LR K+ + +++ R GY I Sbjct: 190 WDITFDP--QTNVVETHISRLRAKVDRPFDNELIETVRGAGYRI 231 >gi|146339730|ref|YP_001204778.1| putative two-component transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146192536|emb|CAL76541.1| putative Two-component transcriptional regulator [Bradyrhizobium sp. ORS278] Length = 224 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 8/130 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 FD+G DD V KP H E+LAR+ A+ RR + + GP+ + + V G + Sbjct: 91 FDAGADDYVAKPFHLEEVLARIRALLRRSAGHAQSELTCGPVTLDTRTGKVSVSGNPVKM 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V+++++ +Y FD + N +E + ++RK KL D Sbjct: 151 TSHEYRLLSYLMHHSGRVVSRSELVEHLYDQDFDR--DSNTIEVFVGRIRK----KLDCD 204 Query: 209 PVDSKRFLGY 218 + + R LGY Sbjct: 205 VIQTVRGLGY 214 >gi|158317887|ref|YP_001510395.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113292|gb|ABW15489.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 228 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 64 EVCRTLRARSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRVE 123 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +VS+ E G +R+ + V G LP +E +LE + N G+ + + Q+ + Sbjct: 124 TEEVSDATLEVGRVRMDVERHVVTVDGSQVALPLKEFELLEMFLRNAGRVLTRGQLIDRV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + G + + R LGY + Sbjct: 184 WG-SDYVGDTKTLDVHVKRLRTKIEAEPGAPRHLVTVRGLGYKFE 227 >gi|121606845|ref|YP_984174.1| two component transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120595814|gb|ABM39253.1| two component transcriptional regulator, winged helix family [Polaromonas naphthalenivorans CJ2] Length = 224 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 86/163 (52%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ + +RA S +P++ ++ S++ + D G DD + KP +E+ ARV A+ RR Sbjct: 61 LEVLKRLRARGSTLPVLILTAADSVEERVKGLDYGADDYMAKPFSLQELEARVRALVRRG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + GP+ GR + G + L RE +LE L+ G+ V+K Q+ + Sbjct: 121 MGGGSSTIKHGPLVYDQAGRVATIDGHMVELSARELGLLEVLLQRAGRLVSKDQLVERLC 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E +I +LRKK+ G + + R LGY ++ Sbjct: 181 E-WGEEVSNNAIEVYIHRLRKKIEK--GPVRIATVRGLGYCLE 220 >gi|254470046|ref|ZP_05083450.1| two component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] gi|211960357|gb|EEA95553.1| two component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] Length = 233 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 110/228 (48%), Gaps = 14/228 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LIDD + ++D G++G + E S D+ ++ + GE + Sbjct: 14 ILLIDDDSRIRDLLNRFLGENGFRVTVAKDAEEARRRLSGLEFDLLILDVMM--PGESGI 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 EL + +R VP++ ++ ++ ++ ++GVDD V+KP RE+L R++AI RR Sbjct: 72 ELAKDLRRSKAVPILMLTARSEIEDRIEGLEAGVDDYVSKPFEPRELLLRISAILRRGGP 131 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K+ GP + ++ + + E L RE++IL G+ VA+T + A Sbjct: 132 KPKMKLEVLSFGPFQYNAERGELKRNDEHVRLTDREKQILNTFAEKPGQTVARTDLVGA- 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223 D ++ E ++ +++LR+K+ G +P + + R +GY + N Sbjct: 191 ----DASLGERTIDVQVNRLRRKIEEDPG-NPLYLQTVRGIGYRLITN 233 >gi|27468859|ref|NP_765496.1| two component response regulator [Staphylococcus epidermidis ATCC 12228] gi|81842588|sp|Q8CN92|HSSR_STAES RecName: Full=Heme response regulator hssR gi|27316407|gb|AAO05582.1|AE016750_187 two component response regulator [Staphylococcus epidermidis ATCC 12228] Length = 224 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 8/197 (4%) Query: 28 GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTT 87 G SL+F E + D++ ++ + G EL + ++ +P+I ++ +L Sbjct: 34 GEASLDFLE----NKNVDIAIVDIMM--SGMDGFELCQTLKDDYHIPVIMLTARDALSDK 87 Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEV 146 F SG DD V KP +E+L R+ A+ RR ++ ++N + G + + + V + Sbjct: 88 ERAFLSGTDDYVTKPFEVKELLFRIKAVLRRYQINADNELQLGNLILNQSYMEITVGSKT 147 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 LP +E ++L L +N + I I+G FD ++ V+ HI +LR++L Sbjct: 148 MNLPNKEFQLLFLLASNPKHIFTRDDIIGKIWG-FDYEGDDRTVDVHIKRLRQRLSKLKS 206 Query: 207 FDPVDSKRFLGYSIDWN 223 + + R GY +D N Sbjct: 207 SVSIQTVRGQGYRVDQN 223 >gi|109896972|ref|YP_660227.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109699253|gb|ABG39173.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] Length = 222 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 20/161 (12%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------- 119 R VP + ++ S+ + DSG DD + KP +E+LAR+ + RRL Sbjct: 68 RNKHSVPTLILTARDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLGTATSSLI 127 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N + +V +D + E L RRE +L+ LM N G+ +K+Q+ + +Y Sbjct: 128 NIGNVVLDLATHQVTADNNEKE-------LSRREFMLLKALMENAGRIQSKSQLETKLYE 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE + N +E HI LRKKL D + + R +GYS+ Sbjct: 181 WGDE-LSSNAIEVHIHNLRKKLPK----DFIKTIRGVGYSV 216 >gi|312898518|ref|ZP_07757908.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] gi|310620437|gb|EFQ04007.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] Length = 226 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 84/162 (51%), Gaps = 8/162 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122 R IR S VP+I I+ L +D GVDD + KP + ++A++ A+ RRL + Sbjct: 65 REIRRTSTVPIIMITAKDEEIDQLFAYDLGVDDYITKPFSPKLLVAKMKALLRRLHGEGE 124 Query: 123 NNRAETGPIRVFSDGRDPE---VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N A+ P + R+ + G+ L E ++L YLM N GK +++ QI + ++ Sbjct: 125 ENGADAVPAEGVAIDREAHQVLIDGKSTDLSPTEYKLLNYLMTNAGKALSRRQILNKVWN 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + V++HI++LR KL N+ + + + R GY D Sbjct: 185 -YEYYGDLRTVDTHINRLRIKLGNRGSY--IQTVRGYGYRYD 223 >gi|300853961|ref|YP_003778945.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434076|gb|ADK13843.1| transcriptional regulatory protein [Clostridium ljungdahlii DSM 13528] Length = 225 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 8/162 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 I Q+P+I +S L T L+ G DD + KP ++ E++ R+ A+ RR+ Sbjct: 67 INEQFQIPIICVSAKDDLNTKLELIRDGADDYITKPFNNEELIVRIGAVLRRMNKGMTID 126 Query: 127 ETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +T R + S+ + E L +E ILE L+++ K K IF +++ Sbjct: 127 KTNIFRFKDLILDSENHIVTINDEPIELTAKEYSILELLISSPRKVFTKQNIFESVWS-E 185 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + ++E VV H+S LR KL++ G + + + +GY + N Sbjct: 186 EYIMDERVVTVHVSNLRNKLKH--GEEYIKTVWGIGYKMQDN 225 >gi|296137109|ref|YP_003644351.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295797231|gb|ADG32021.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 239 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 88/162 (54%), Gaps = 5/162 (3%) Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 E+ R +RA + VP++ ++ S++ + D G DD + KP +E+ ARV A+ RR + Sbjct: 61 EVLRKLRARGATVPVLILTAADSVEDKVRGLDLGADDYMAKPFALQELEARVRALSRRGM 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + GP+ GR + G V L RE +LE L+ G+ V+K Q+ + Sbjct: 121 GGASAVIQHGPLHYDITGRVVTLDGHVVELSARELTLLEVLLQRAGRLVSKDQLVEHLC- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ E V N +E ++ +LRKK+ ++G + + R LGY ++ Sbjct: 180 VWGEEVSTNAIEVYVHRLRKKI--EVGPVRIATVRGLGYCLE 219 >gi|167747978|ref|ZP_02420105.1| hypothetical protein ANACAC_02710 [Anaerostipes caccae DSM 14662] gi|317472474|ref|ZP_07931796.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167652628|gb|EDR96757.1| hypothetical protein ANACAC_02710 [Anaerostipes caccae DSM 14662] gi|316900047|gb|EFV22039.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 225 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 112/236 (47%), Gaps = 25/236 (10%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIGKGEK 59 M +++D A +++ I G G+ S + F + L + ++ ++ L GE Sbjct: 1 MIYIVEDDANIRELVIYTLQSTGFDAGGYESGISFFKDLSAGKIPELVLLDIML--PGED 58 Query: 60 VLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 + + R IR++ + +P+I ++ + + DSG DD + KP E+++R+ A+ Sbjct: 59 GISILRKIRSNPETKHIPVIMMTAKGAEYDKVLGLDSGADDYITKPFGMMELVSRIKAVL 118 Query: 117 RRLK---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RR+K N G +V +DG E L +E R+L LM ++G Sbjct: 119 RRVKKEEPTEELSAGNLYIHVGKHKVLADGEKVE-------LTYKEFRLLCMLMESKGNV 171 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + + Q+ + I+G +D E V+ HI LR+KL + G +++ R +GY I N Sbjct: 172 LTRDQLLTNIWG-YDFDGETRTVDVHIRTLRQKL-GECG-SMIETVRGIGYRIGGN 224 >gi|327440162|dbj|BAK16527.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 223 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 6/161 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR S VP++ I+ + + D+G DD V KP E+LAR+ +I RR++ Sbjct: 62 IEVCRRIRKTSNVPILLITARDEVMDRVSGLDAGADDYVVKPFAIEELLARIRSILRRVQ 121 Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + D + + L R+E +L+ L+ NR + +I ++ Sbjct: 122 PAQKSKQLILRELEIDVDAYEVIFENNKIELTRKEFDLLKLLVENRNLVCTRERILEEVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 G FD VE NVV+ +I LR KL+ + P +++ R +GY Sbjct: 182 G-FDTEVETNVVDVYIRHLRTKLQTE--HTPYIETVRGVGY 219 >gi|268609476|ref|ZP_06143203.1| two component transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 220 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 80/150 (53%), Gaps = 6/150 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R ++ P++ +S + L+ D G DD + KP +LA++ I++R + + Sbjct: 67 LRENADTPILIVSARTDKEDKLNGLDLGADDYIEKPYDIDILLAKIKGIFKRRYQRSMLS 126 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 +G + ++ + E+ G++ L +E +L L+ N+GK + K +FS ++G D E Sbjct: 127 ASGVVLNLAN-KTAEIDGKLVQLSAKEFDLLALLIENQGKALKKEYLFSTVWG-SDSDSE 184 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + HI++LR+ KLG DP +++R L Sbjct: 185 LQTLHVHINRLRQ----KLGDDPKNARRLL 210 >gi|188584441|ref|YP_001927886.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179347939|gb|ACB83351.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 234 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R IRA + +P+I ++ + +G DD V KP E+LARV A+ R Sbjct: 63 IELCRRIRARRETERLPVIMLTARGEEADRVRGLSTGADDYVVKPFSVPELLARVRALLR 122 Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R K ++ + G I + QG L E ++LEYLM + G+ ++ Q+ Sbjct: 123 RAKPAHVADLLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLD 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ H+ +LRK + DP+ + R GYS D Sbjct: 183 GVWG-HDVYIDERTVDVHVGRLRKAINRPRQSDPIRTVRGSGYSFD 227 >gi|294791476|ref|ZP_06756633.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304] gi|294457947|gb|EFG26301.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304] Length = 249 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 20/172 (11%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI + + P++ ++ Q + G DD V KP E++AR+ AI RR K Sbjct: 71 RIRQQGMEAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTK---E 127 Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +AE PI + D D G + L E ++L YLM N G+ ++K QI ++ Sbjct: 128 QAEDDPIIRVADLEINEDSHDVTRHGMLIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP----------VDSKRFLGYSI 220 +D + +VES+IS LRKK+ + D + +KR +GY I Sbjct: 188 Q-YDWGGDAAIVESYISYLRKKIDGVVYTDDEGNEQKVAPIIQTKRGMGYMI 238 >gi|293375811|ref|ZP_06622081.1| putative subtilin biosynthesis regulatory protein SpaR [Turicibacter sanguinis PC909] gi|325840818|ref|ZP_08167182.1| subtilin biosynthesis regulatory protein SpaR [Turicibacter sp. HGF1] gi|292645588|gb|EFF63628.1| putative subtilin biosynthesis regulatory protein SpaR [Turicibacter sanguinis PC909] gi|325490188|gb|EGC92525.1| subtilin biosynthesis regulatory protein SpaR [Turicibacter sp. HGF1] Length = 226 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 106/226 (46%), Gaps = 10/226 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V+ DD +++ Y AL + + + NS FE Q D+ ++ + G+ Sbjct: 5 ILVVDDDLEILEMLYDALNDEGYLVYKASNS--FEARSQLKVNPDLMILDVMM--PGQDG 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E + IR+ P+I ++ S + F G DD + KP RE+ ARVAA RR + Sbjct: 61 FEFCKEIRSVVSCPIIFLTAKVSESDLIQGFAIGGDDYLTKPFSLRELRARVAAHLRRNE 120 Query: 121 VSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++R ++ I ++ R E PL +RE I+E L N+ + +K QI+ Sbjct: 121 RQSSREQSFLIFQHLKINLQSRTVLYFDECVPLTKREYEIVELLALNKNQVFSKEQIYEL 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 ++GL E V E H+ K+R K + + F+ + + +GY D Sbjct: 181 VWGLDAEGDCATVAE-HVKKVRSKFQTIQTDFNYLKTVWGVGYKWD 225 >gi|307727553|ref|YP_003910766.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307588078|gb|ADN61475.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 231 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 6/150 (4%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIR 132 P++ ++ + S++ + D G DD + KP E+ AR A+ RR RA+ G + Sbjct: 82 PVLMLTAHGSVEERVRGLDLGADDYLAKPFALTELEARARALLRRGHGQEATRAQCGTLV 141 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 S R + GE L RER +LE L+ G+ + K + I+GL DE+V + +E Sbjct: 142 YDSVDRSFTLDGEPLALTPRERSVLEVLILRNGRAINKETLSEKIFGL-DESVNADAIEI 200 Query: 193 HISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 ++ +LRKKL R+ +G + + R LGY ++ Sbjct: 201 YVHRLRKKLERSSVG---IVTLRGLGYLLE 227 >gi|270263020|ref|ZP_06191290.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270042708|gb|EFA15802.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 220 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 11/207 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D L+ DG A G++ GFN F + L + + + +A ++ L Sbjct: 3 ILLIEDDKLIGDGIKA-----GLTKLGFNLDWFTDGLVGKSALESAPYDAVILDLSLPGL 57 Query: 62 ELPRIIRAHSQ----VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 + ++R Q VP++ ++ +L+ + SG DD + KP E+ AR+ A+ R Sbjct: 58 DGLDLLRQWRQAGHDVPVLILTARDALEQRVSGLQSGADDYLCKPFALTEVAARLQALIR 117 Query: 118 RLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + G + S R GE L RE +LE + N+G+ +A++ I Sbjct: 118 RRHGQLMPQLVHGNLVFDSATRSVNCNGEPVTLTPRELAVLELFLHNKGRVLARSLIQEK 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203 +Y +D+ V N VE HI LR+KL N Sbjct: 178 LYN-WDDEVSSNAVEVHIHHLRRKLGN 203 >gi|209524683|ref|ZP_03273230.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209494827|gb|EDZ95135.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 227 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 79/147 (53%), Gaps = 6/147 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ +R+ ++ P++ ++ +L + D+G DD + KP RE+LARV A+ RR Sbjct: 60 LEICAQLRSQQNRTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRRP 119 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + V++NR E G ++ + + L +E ++LEYLM + G+ + T+I Sbjct: 120 PILDVAVTSNRLEFGDLQFDCETQLAYRGQRAIELSEKESQLLEYLMRHPGQLLTHTEIH 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++G D+ NV+ + I LR+K+ Sbjct: 180 QHLWGETDKKPSSNVLAAQIRLLRRKI 206 >gi|160892089|ref|ZP_02073092.1| hypothetical protein BACUNI_04552 [Bacteroides uniformis ATCC 8492] gi|317480521|ref|ZP_07939613.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|156858567|gb|EDO51998.1| hypothetical protein BACUNI_04552 [Bacteroides uniformis ATCC 8492] gi|316903313|gb|EFV25175.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 225 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 6/152 (3%) Query: 55 GKGEKVL-ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G G +L EL ++ R+ S ++ IS SL +D + G DD + KP H E+ ARV Sbjct: 57 GSGLDLLRELKQLHRSDS---VLIISAKDSLDDKVDGLELGADDYLTKPFHLAELNARVK 113 Query: 114 AIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ RR + + T G + ++ D R E+ G+ L R+E +L Y + N G+ + K Sbjct: 114 SLIRRRQAKGDVTVTLGNLLLYPDKRQVEINGKPLQLNRKEFDLLYYFVVNPGRVINKMS 173 Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRN 203 + +++G D+A + + S + LRKKL+ Sbjct: 174 LAESVWGDNIDQADSLDFIYSQVKNLRKKLKQ 205 >gi|284036763|ref|YP_003386693.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283816056|gb|ADB37894.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 228 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 9/166 (5%) Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 E+ R IRA H +P+I ++ ++ ++ + G DD + KP RE+ ARVA +RR Sbjct: 62 EICRNIRADHPTLPIIMLTAMGEIEDKIEGLECGADDYIVKPFDLRELSARVATCFRRSD 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 L +S+ E + + +V L +E +LEYLM ++G+ V+K + Sbjct: 122 LLISSTGEEMLQVADLTLNVTSKVVMRDNTFIELTAKEFALLEYLMRHQGRVVSKIDLAE 181 Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ FD NVVE +I+ LRKK+ + + ++ LGY++ Sbjct: 182 KVWNFNFDPGT--NVVEVYINYLRKKIDKEFDVKLIHTRPGLGYTL 225 >gi|325962194|ref|YP_004240100.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] gi|323468281|gb|ADX71966.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] Length = 226 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 14/174 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ E+ R +R S VP+I ++ + + + G DD V KP RE++ARV A+ Sbjct: 57 GQSGTEVCRQLRQRSSVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVL 116 Query: 117 RRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR ++ ++ + GP+R+ + V GE LP +E +LE L+ N G+ + + Q Sbjct: 117 RRQGEPEELISSTVQAGPVRMDIERHVVSVGGEQVLLPLKEFELLEMLLRNSGRVLTRGQ 176 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 + ++G D + ++ H+ K+LR K+ DP + R LGY + Sbjct: 177 LIDRVWG-SDYVGDTKTLDVHV----KRLRGKIEPDPSAPRYLVTVRGLGYKFE 225 >gi|57235029|ref|YP_180885.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57225477|gb|AAW40534.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] Length = 230 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 93/200 (46%), Gaps = 18/200 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY +DG+ G R S + ++ G EL R+IRA Sbjct: 23 LAKEGYQLECAEDGLKALGMYR-----------RFKPSLVILDVMLPGMDGFELCRLIRA 71 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-- 127 S VP++ ++ S ++ + G DD ++KP +E+LAR+ A+ RR ++ N++ E Sbjct: 72 ESSVPILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALLRRSQMQNSQPEPV 131 Query: 128 ----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + +F + GE +E +L +++ NR + ++ Q+ ++G +D Sbjct: 132 SGLKIDNLEIFFERHLVMRDGEALDFSPKEFDLLSFMVQNRCRVFSREQLLEKVWG-YDY 190 Query: 184 AVEENVVESHISKLRKKLRN 203 V+ HIS LR+K+ Sbjct: 191 PGGTRTVDVHISWLRQKIET 210 >gi|148254507|ref|YP_001239092.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146406680|gb|ABQ35186.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 224 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 8/130 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 FD+G DD V KP H E+LAR+ A+ RR + + GP+ + + V G + Sbjct: 91 FDAGADDYVAKPFHLEEVLARIRALLRRSAGHAQSELTCGPVTLDTRTGKVSVSGNPVKM 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V+++++ +Y FD + N +E + ++RK KL D Sbjct: 151 TSHEYRLLSYLMHHSGRVVSRSELVEHLYDQDFDR--DSNTIEVFVGRIRK----KLDCD 204 Query: 209 PVDSKRFLGY 218 + + R LGY Sbjct: 205 VIQTVRGLGY 214 >gi|309779544|ref|ZP_07674305.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] gi|308921785|gb|EFP67421.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] Length = 225 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 14/203 (6%) Query: 28 GFNS------LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 G+N+ ++ ++W+ ++ E + G+G LE R AHS VP+I S Sbjct: 25 GYNATWVRRLVDAQKWITTNTFEAIVLDLGLPDGEGHTFLEELRA--AHSDVPVIIASAR 82 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDP 140 +L L DSG DD + KP E++AR+ A+ RR S N+ G + V + Sbjct: 83 DALSERLKGLDSGADDFLVKPFPVDELIARLRAVLRRHAGQSTNQWNVGNLVVEPSQKRV 142 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 +G+V L RE ++L L+ + V + + A+Y D +V N +E I LR+ Sbjct: 143 TQEGQVIELTPREYQLLLELVRRAHRWVPRETLMDALYREGD-SVSANALEVVIHHLRR- 200 Query: 201 LRNKLGFDPVDSKRFLGYSIDWN 223 KLG + + + R +GY I N Sbjct: 201 ---KLGNETIQTIRGVGYMIGGN 220 >gi|210621230|ref|ZP_03292536.1| hypothetical protein CLOHIR_00479 [Clostridium hiranonis DSM 13275] gi|210154841|gb|EEA85847.1| hypothetical protein CLOHIR_00479 [Clostridium hiranonis DSM 13275] Length = 247 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/162 (32%), Positives = 86/162 (53%), Gaps = 10/162 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +VP+I IS S + + G DD + KP + ++A+V A++RR N A Sbjct: 87 IRRFLKVPIIFISSRDSDMDIIMSINMGGDDYIVKPFSIQLLIAKVQAVFRRAYSYNITA 146 Query: 127 ETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + I+V +DG + G V L R E +IL LM N G V++ +I A++ Sbjct: 147 DREIIKVGEITLNIADGTVIK-DGIVVELSRNEFKILHILMQNAGSIVSRDEIMDALWST 205 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 DE + EN + ++++LR KL++ +G D + +K+ GY I+ Sbjct: 206 -DEFIGENTLTVNVTRLRNKLKS-IGLDDYIKTKKGQGYIIE 245 >gi|187476614|ref|YP_784637.1| two-component response regulator [Bordetella avium 197N] gi|18307419|emb|CAD21032.1| putative two-component regulator protein [Bordetella avium 197N] gi|115421200|emb|CAJ47705.1| two-component response regulator [Bordetella avium 197N] Length = 223 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 61/194 (31%), Positives = 102/194 (52%), Gaps = 11/194 (5%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHS-QVPLIGISDYPSLQTT 87 + L +W Q+ D ++ L GK G+ VL R +RA + P++ ++ ++ Sbjct: 32 DGLAAVQWGQAEP-WDALLLDISLPGKDGDAVL---RELRAAGMESPVLVMTARAEIEDK 87 Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEV 146 +D D G DD + KP RE+ AR+ A+ RR +++ A G + + S R V G+ Sbjct: 88 VDMLDLGADDYLVKPFDLRELEARLRALMRRPGGQTSSVAMFGNLTLDSANRGVWVNGQP 147 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L RRE R+LE L+ +G+ VAK ++ + ++ D V N +E IS+LR+KL + Sbjct: 148 LELGRREFRLLEILLTRQGQTVAKERLMAQVFDADD--VSLNALELLISRLRRKLADA-S 204 Query: 207 FDPVDSKRFLGYSI 220 D V + R +GY + Sbjct: 205 VDIV-TVRGVGYQV 217 >gi|83942324|ref|ZP_00954785.1| DNA-binding response regulator CtrA [Sulfitobacter sp. EE-36] gi|83953543|ref|ZP_00962264.1| DNA-binding response regulator CtrA [Sulfitobacter sp. NAS-14.1] gi|83841488|gb|EAP80657.1| DNA-binding response regulator CtrA [Sulfitobacter sp. NAS-14.1] gi|83846417|gb|EAP84293.1| DNA-binding response regulator CtrA [Sulfitobacter sp. EE-36] Length = 239 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 2/136 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 Q P++ +S + + F G DD + KP H E++AR+ AI RR K S + G Sbjct: 72 QTPILILSGSDDTENKIKGFGFGADDYLTKPFHREELVARIHAIIRRSKGHSQSVINVGR 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V D + V + L +E ++ E L +G + K + +YG DE E ++ Sbjct: 132 VSVNLDAKSVTVGDKPVHLTGKEYQMFELLSLRKGSTLTKEMFLNHLYGGMDEP-ELKII 190 Query: 191 ESHISKLRKKLRNKLG 206 + I KLRKKL N G Sbjct: 191 DVFICKLRKKLSNATG 206 >gi|307326975|ref|ZP_07606165.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306887273|gb|EFN18269.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 226 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +++ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEEITPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209 >gi|307544165|ref|YP_003896644.1| response regulator OmpR [Halomonas elongata DSM 2581] gi|307216189|emb|CBV41459.1| K02483 two-component system, OmpR family, response regulator [Halomonas elongata DSM 2581] Length = 220 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 24/229 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D L+ DG +G +++ WL++ R+ ++AI L Sbjct: 3 VLLVEDDPLLGDGIRTALQREGYAVD---------WLET-GRDGIAAIRHDDFSAVILDL 52 Query: 62 ELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 LP I IR +P++ ++ ++++ + D G DD V KP +E+LAR+ Sbjct: 53 GLPDIDGMEVLDKIRHAGSLPVLILTARDAVESRISGLDGGADDYVLKPFDLQELLARLR 112 Query: 114 AIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 I RR + ++R E G + + QG L RRE +L L + G+ + + Sbjct: 113 VIMRRAEGRSSRLLEVGELCIDEARHRVSWQGNDISLTRREYALLLELARHPGRVMTRPH 172 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +YG DE V N VE H+ LRKKL L + + R +GY +D Sbjct: 173 LEDLLYGWEDE-VASNAVEVHVHHLRKKLDRHL----IATVRGVGYRLD 216 >gi|228956988|ref|ZP_04118764.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802687|gb|EEM49528.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 228 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 76 ETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSLTTQQTIRYK 135 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F +D +V G+ L ++ LEYL+ N GK + + QIF ++G FD + Sbjct: 136 GIELFGKDKDVQVDGKGMKLSLKQYEFLEYLVQNSGKILMREQIFDRVWG-FDSDTTVAI 194 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VE ++ LRKKL G+ + + R +GY Sbjct: 195 VEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 223 >gi|323488348|ref|ZP_08093596.1| two component transcriptional regulator, winged helix family protein [Planococcus donghaensis MPA1U2] gi|323398006|gb|EGA90804.1| two component transcriptional regulator, winged helix family protein [Planococcus donghaensis MPA1U2] Length = 228 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 5/161 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120 L ++ + P+I ++ + + F +G DD + KP H E+L R+ AI RR + Sbjct: 62 LKKLRSQNITTPVIMLTAKDGIGDKIQGFKAGADDYLAKPFHREELLLRLEAIVRRSGGE 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + N +++ + ++ E L ++ +LEYL+ N+ + K QIF I+G Sbjct: 122 LKQNTLSFKELKLNIKNKTAQLGEETVKLNGKQFDLLEYLVNNKNIILTKEQIFDRIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 F+ VVE + S LRK L+ K +D + + R LGY + Sbjct: 181 FESDTSTTVVEVYASNLRKTLK-KFNYDQYIKTFRGLGYML 220 >gi|313158184|gb|EFR57589.1| putative response regulator ArlR [Alistipes sp. HGB5] Length = 225 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 4/151 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G ++LE + R Q +I IS SL ++ + G DD + KP H E+ AR+ + Sbjct: 57 GSGLQLLE--ELKRQRRQAGIIIISARDSLDDKIEGLELGADDYLPKPFHLAELSARIRS 114 Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR + + + G +R+F D R E+ G L R+E IL Y M+ + KT + Sbjct: 115 VVRRHQRGGQESLDAGNVRLFPDSRRVEIAGREVELLRKEYDILYYFMSRPNHMIDKTTL 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRN 203 A++G D+A + V + + LR++L + Sbjct: 175 AEAVWGDHIDQADNFDFVYAQMKNLRRRLHD 205 >gi|260437006|ref|ZP_05790822.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] gi|292810315|gb|EFF69520.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] Length = 222 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 94/200 (47%), Gaps = 14/200 (7%) Query: 10 LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 LV++GY+ +DG +L+ F S D+ I ++ +L + +R Sbjct: 22 LVREGYVVCEAEDGEAALDIFCS-----------NNDIDLIIMDVMMPKMDGWQLCKEVR 70 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-E 127 S+VP++ ++ Q L F+ GVD+ ++KP + + ARV A+ RR N + Sbjct: 71 KLSKVPILMLTAKSEEQDELKGFELGVDEYISKPFSPKILTARVNALLRRTTGDNEEILD 130 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 I V + G+ L +E +L Y M NRG +++ +I + ++ +D + Sbjct: 131 IAGITVNKIAHTVTIDGKEIDLSFKEFELLTYFMENRGVALSREKILNNVWN-YDYYGDA 189 Query: 188 NVVESHISKLRKKLRNKLGF 207 +++H+ KLR K+ K F Sbjct: 190 RTIDTHVKKLRSKMGEKGKF 209 >gi|229824525|ref|ZP_04450594.1| hypothetical protein GCWU000282_01869 [Catonella morbi ATCC 51271] gi|229785896|gb|EEP22010.1| hypothetical protein GCWU000282_01869 [Catonella morbi ATCC 51271] Length = 225 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 2/152 (1%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129 SQVP + ++ ++ + D G DD + KP +E+LAR+ ++ RR + N G Sbjct: 71 SQVPTLLLTAKNQIEDKVQGLDLGADDYLTKPFDMQELLARIRSMLRRPANLVENDLRYG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + ++ V L +RE +++E M N+ + ++ I I+GL D E NV Sbjct: 131 DLTLYRQRASLAVGAAELALNKREFQLMEMFMLNQQQVLSTDLIMERIWGL-DSDAEINV 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V ++S LRKKL+ + + R LGY ++ Sbjct: 190 VWVNVSSLRKKLQQLGSKVTIKASRGLGYQLE 221 >gi|170758276|ref|YP_001787361.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169405265|gb|ACA53676.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 221 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 21/217 (9%) Query: 9 ALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 L + GY+ DG +++E F EF+ + + I+ F++ + II Sbjct: 21 VLKESGYLVEVATDGLIAVEMFRRGEFDLIILDVM---LPKIDGFVVCE---------II 68 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNN 124 R S +P+I ++ + + F+ VDD + KP ++ RV A+ RR L+ +N+ Sbjct: 69 RKESSMPIIMLTALGEEEDEMKGFELKVDDYIIKPFSINLLIKRVEAVLRRANGLEENNS 128 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 I ++ V + L +E +ILE L++N G+ ++ + + I+G +D Sbjct: 129 TLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIWG-YDYF 187 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V+++HI K LR KL D + + R +GY I+ Sbjct: 188 GDTRVIDTHI----KNLRQKLNIDYIKTIRGVGYKIE 220 >gi|187777120|ref|ZP_02993593.1| hypothetical protein CLOSPO_00665 [Clostridium sporogenes ATCC 15579] gi|187774048|gb|EDU37850.1| hypothetical protein CLOSPO_00665 [Clostridium sporogenes ATCC 15579] Length = 228 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 84/159 (52%), Gaps = 6/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR HS+VP+I IS S + ++G DD + KP + +LA++ + RR+ S + Sbjct: 63 IRNHSKVPIIFISARDSDMDQVMAIENGGDDFITKPFSYYVLLAKIKGVLRRVYGSYAKN 122 Query: 127 ET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +T G + ++++ E +G L + E +L YL+ N K V++ + ++ Sbjct: 123 DTDFLKIGDLILYTNKSILEFKGRKTELSKNEFSLLLYLLKNINKIVSRDTLLEILWSDT 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +++N + ++++LRK+L D +++KR GY + Sbjct: 183 D-FIDDNTLSVNVTRLRKRLEEVGITDAIETKRGQGYML 220 >gi|145298334|ref|YP_001141175.1| two-component system responsse regulator PhoP [Aeromonas salmonicida subsp. salmonicida A449] gi|142851106|gb|ABO89427.1| two-component system responsse regulator PhoP [Aeromonas salmonicida subsp. salmonicida A449] Length = 224 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 75/146 (51%), Gaps = 3/146 (2%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIR 132 P+I ++ + Q ++ ++G DD + KP E+LAR+ A+ RR + R + G Sbjct: 74 PIIVLTARGNWQDKVEGLEAGADDYLVKPFQKDELLARLNALVRRSAGFISPRVKAGDYE 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + ++ + GE L E ILEYLM N + V+K Q+ +YG D + N +E Sbjct: 134 LDLSRKELTIGGEPVVLTSFEYLILEYLMRNARQVVSKQQLLDQLYG--DGEGDPNTIEV 191 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218 +S+LRKKL + P+ + R GY Sbjct: 192 MVSRLRKKLDPEGNIQPISTIRRQGY 217 >gi|307299054|ref|ZP_07578856.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306915479|gb|EFN45864.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 225 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 18/173 (10%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VLE +I + S++P++ ++ S++ + FD G DD + KP RE++ R+ ++ Sbjct: 59 GWQVLE--KIRDSGSRIPVLMLTALDSIEDKVRGFDLGADDYLPKPFDIRELVVRIQSLL 116 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKR 167 RR + P RV G D E+ E L ++E +ILEYLM N G+ Sbjct: 117 RRAQFGG-----APSRVLRVG-DLELDMSLKTASRGNEKIELRKKEYQILEYLMLNSGRV 170 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V K+++ ++ DE + +V+ SHI +RKK+ + + R +GY I Sbjct: 171 VPKSELEEHLWNEDDE-LWSDVIRSHIKNIRKKVDGGRRKKLIKTVRGMGYEI 222 >gi|325981914|ref|YP_004294316.1| two component transcriptional regulator, winged helix family [Nitrosomonas sp. AL212] gi|325531433|gb|ADZ26154.1| two component transcriptional regulator, winged helix family [Nitrosomonas sp. AL212] Length = 228 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 5/184 (2%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGV 95 +L S D + I+ L GK LE+ + +R + P++ ++ S Q + + G Sbjct: 38 FLASEYPLDAAIIDIGLPGKSG--LEIIKTLRERGNLLPILILTARSSWQDKVQGLEMGA 95 Query: 96 DDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154 DD + KP E+LARV A+ RR + + GPI V + + L E Sbjct: 96 DDYLTKPFQMEELLARVKALLRRATGIPQTLLKCGPITVDVTAQSVAINEVEIELTSFEY 155 Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214 R+LE L+ + G+ ++K + +Y DE + NV+E I +LR+KL +P+++ R Sbjct: 156 RLLEELVRHHGEVLSKHTLSDYLYP-HDEDRDSNVLEVMIGRLRRKLDPDGTLNPIETMR 214 Query: 215 FLGY 218 GY Sbjct: 215 GRGY 218 >gi|300855748|ref|YP_003780732.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300435863|gb|ADK15630.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 16/189 (8%) Query: 33 EFEEWLQSSAREDVSAIEAF-------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85 ++E + SS E + I+ + ++ G+ E+ IR P+I ++ + Sbjct: 26 DYEVFTASSGEEALEKIKLYPDLILLDIMMPGKNGYEVCNDIRDIVSCPIIFLTAKGEER 85 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG-----PIRVFSDGRDP 140 + SG DD + KP R++ AR+ A RR K + N +E I + R+ Sbjct: 86 DIVKGLASGGDDYIQKPFSLRQLKARIHAHLRREKRNTNNSEKANLYFKNISINLRNREV 145 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 G++ L ++E I+E+L N G+ +K QI+ ++G +D + V H+ K+R K Sbjct: 146 YCNGQLVILTKKEFDIIEFLSVNCGQVFSKEQIYEKVWG-YDAEGDSASVAEHVKKIRHK 204 Query: 201 LRNKLGFDP 209 ++N FDP Sbjct: 205 IQN---FDP 210 >gi|168177582|ref|ZP_02612246.1| regulatory protein VanR [Clostridium botulinum NCTC 2916] gi|182671037|gb|EDT83011.1| regulatory protein VanR [Clostridium botulinum NCTC 2916] Length = 233 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 12/164 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125 IR ++ P+I +S S +T L+ + G DD + KP E++ARV + RR L+ + Sbjct: 70 IREITKAPIIIVSAKTSKKTKLELLEKGADDFICKPFDPDEVVARVNSNLRRYLEFPIDE 129 Query: 126 AETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I ++ D ++ +V + L RE +LE L+ N K +K IF +I+G Sbjct: 130 EKKNNILIYKDITLNKESKEVKVGQTIIILTAREFAVLELLLTNPNKVYSKANIFESIWG 189 Query: 180 LFDEAV-EENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSI 220 +E + ++N V H+S+LR KL N D +++ +GY + Sbjct: 190 --EEFLGDDNTVNVHVSRLRSKLSKANNNREDYIETVWAMGYRL 231 >gi|49474029|ref|YP_032071.1| two-component system regulatory protein [Bartonella quintana str. Toulouse] gi|49239533|emb|CAF25890.1| Two-component system regulatory protein [Bartonella quintana str. Toulouse] Length = 222 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 22/139 (15%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEV 142 D+G DD V KP H E++AR+ A+ RR L +T RVF D Sbjct: 91 IDAGADDYVVKPFHLEELMARLRALIRRSAGHATSALCCGAVLLDTKTSRVFVD------ 144 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201 G++ L E R+L YLM + G+ V+KT++ +Y FD+ + N VE + +LR+ Sbjct: 145 -GQLIKLTSYEFRLLSYLMHHCGRVVSKTELTEHLYDQDFDK--DSNTVEVFVGRLRR-- 199 Query: 202 RNKLGFDPVDSKRFLGYSI 220 KLG D +++ R +GY + Sbjct: 200 --KLGVDVIETIRGMGYRV 216 >gi|125973922|ref|YP_001037832.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005047|ref|ZP_05430018.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418085|ref|ZP_06249105.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125714147|gb|ABN52639.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255991015|gb|EEU01126.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281409487|gb|EFB39745.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316939876|gb|ADU73910.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 232 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 20/201 (9%) Query: 10 LVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 LVK+GY + F D LE FN + + ++ L IR Sbjct: 24 LVKEGYDVETFTDGRSILEAFNKKPADLLVIDIMMPEIDG------------FSLCSTIR 71 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 S VP+I +S + + G DD + KP E++AR+ +I+RR+++ ++ Sbjct: 72 RQSSVPIIIVSAKDTEPDKIAGLTLGSDDYLTKPFSPMELIARIKSIFRRIELDKMHNDS 131 Query: 129 ------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 G I + D + E G+ L E +L YL N+ + V+++++ ++G F+ Sbjct: 132 VREIRIGDIVINVDKKQAEFNGKNIGLTGTEFNLLYYLAKNKNRAVSRSELLDKVWG-FE 190 Query: 183 EAVEENVVESHISKLRKKLRN 203 VE + I +LRKKL + Sbjct: 191 NYVETRATDDTIKRLRKKLSD 211 >gi|302382814|ref|YP_003818637.1| PhoB family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302193442|gb|ADL01014.1| two component transcriptional regulator PhoB, winged helix family [Brevundimonas subvibrioides ATCC 15264] Length = 229 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 73/135 (54%), Gaps = 3/135 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFP 148 D+G DD + KP E++AR+ A+ RR++ ++++R G I + G+ Sbjct: 95 LDTGADDYLTKPFSMTELIARIRAVLRRIRPGLADDRVGHGDIVIDRVAHRVRRSGKEVH 154 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L E R+L++ M + G+ ++ Q+ A++G D VE V+ H+ +LRK L + + Sbjct: 155 LGPTEFRLLDHFMRHPGRVFSREQLLDAVWG-SDVYVEARTVDVHVGRLRKALNVEESAN 213 Query: 209 PVDSKRFLGYSIDWN 223 P+ + R GYS+D + Sbjct: 214 PIRTVRSAGYSLDLD 228 >gi|163758753|ref|ZP_02165840.1| response regulator,controls chromosomal replication initiation protein [Hoeflea phototrophica DFL-43] gi|162284043|gb|EDQ34327.1| response regulator,controls chromosomal replication initiation protein [Hoeflea phototrophica DFL-43] Length = 233 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 3/147 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV + L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVITTGDLVVNLDAKTVEVGSQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG 206 DE E +++ I KLRKKL G Sbjct: 181 GMDEP-ELKIIDVFICKLRKKLATSAG 206 >gi|291548309|emb|CBL21417.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 230 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 4/164 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G E + IR P++ ++ + L G DD + KP +E+ ARVAA Sbjct: 66 GTDGFEFCKQIRNMVDCPILFLTAKTLEEDILFGLGIGADDYITKPFRIQELRARVAAHL 125 Query: 117 RRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR K ++ + IR + V + PL + E I EYL NRG+ K QI+ Sbjct: 126 RREKREHHSTLSFEPDIRFDLSAKVLYVSEQPVPLTKSEYSICEYLAKNRGQVFTKEQIY 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 A++G FD + + + +HI +R KL + P+ + +GY Sbjct: 186 EAVFG-FDGIGDNSTISTHIKNIRAKLEH-FKISPISTVWGIGY 227 >gi|111017096|ref|YP_700068.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110816626|gb|ABG91910.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 225 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 100/221 (45%), Gaps = 26/221 (11%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66 R L +G++ DG+S GF + S DV ++ L GK G ++ R Sbjct: 18 RGLTAEGFVVDVEHDGLS--GFEA-------ALSGDFDVVVLDIMLPGKHGYDIVRDLR- 67 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R P++ +S D FD G DD + KP ++AR+ A+ RR A Sbjct: 68 -RREVWTPVLMLSAKDGEYDLADAFDLGADDYLIKPFSFVVLVARLRALVRR------GA 120 Query: 127 ETGPIRVFSDGR--DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 P + +DG DP G L RE +LE+LM N G V K +I +++ Sbjct: 121 PRRPTVLTADGLELDPARHRVTRDGTALALTPREYSVLEFLMRNAGSAVTKQEILQSVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++N+VE +I LR+K+ G + +D+ R +GY + Sbjct: 181 THYEG-DDNIVEVYIGYLRRKVDTPFGRNSIDTVRGVGYRL 220 >gi|332295042|ref|YP_004436965.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] gi|332178145|gb|AEE13834.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] Length = 224 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 83/166 (50%), Gaps = 11/166 (6%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ +++RA ++P++ +S + D G DD + KP +E+LAR+ ++ RR Sbjct: 63 EILKVLRARGLEIPILVLSALTEEHNKVSLLDLGADDYLTKPFGMKELLARIRSLIRRKN 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E GP RV + QG + L E ++L +L N G+ ++ ++ ++G Sbjct: 123 GFGLVVEKGPFRVDKEKSQIYFQGNLMNLTATEYKLLLFLFENNGRTYSREKLIDKVWGE 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221 + VE +V+ +I +LR+K+ DP + ++R GY ++ Sbjct: 183 -EYFVEARMVDVYIRRLREKIET----DPSNPQILKTRRGFGYVLE 223 >gi|251789546|ref|YP_003004267.1| DNA-binding transcriptional regulator PhoP [Dickeya zeae Ech1591] gi|27526279|emb|CAD33237.1| PhoP protein [Erwinia chrysanthemi] gi|247538167|gb|ACT06788.1| two component transcriptional regulator, winged helix family [Dickeya zeae Ech1591] Length = 222 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 3/156 (1%) Query: 68 RAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNR 125 R+H ++P++ ++ S Q + ++G DD V KP H E++AR+ A+ RR +++ Sbjct: 67 RSHQVKLPILVLTARESWQEKVAVLEAGADDYVTKPFHIEEVVARMQALMRRNSGLASQI 126 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 P V R+ V GE L E I+E L+ N GK V+K + +Y E Sbjct: 127 ISLPPFEVDLSRRELLVHGEAVKLTAFEYTIIETLIRNNGKVVSKESLMLQLYP-DAELR 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E + ++ + +LRKKL++ D + + R GY D Sbjct: 186 ESHTIDVLMGRLRKKLQSANSHDVITTVRGQGYRFD 221 >gi|327402108|ref|YP_004342946.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327317616|gb|AEA42108.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 229 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 7/158 (4%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL------KVSN 123 ++Q P+I ++ + L+ + +D G DD + KP + RE+L R+ ++ +R + N Sbjct: 71 NTQTPVIMLTAFDELEDKIQGYDCGADDYLTKPFYMRELLLRIQSLLKRSENLGKNEFEN 130 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N I + + + QG+ L RE +IL L+ +G+ V+K + I+G + Sbjct: 131 NLLVADDIVINNASKKVTRQGKEVQLTPREFQILLKLVECKGELVSKQDLVKEIWGNIVD 190 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A N +E +I+ LR KL G + +K GY D Sbjct: 191 A-NTNTIEVYINFLRGKLDKPFGKQSIKTKIGYGYYFD 227 >gi|146307998|ref|YP_001188463.1| two component transcriptional regulator [Pseudomonas mendocina ymp] gi|145576199|gb|ABP85731.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 225 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 106/219 (48%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ ++G ++ + E + S D++ ++ L G + Sbjct: 3 LLVVEDEALLRHHLFTRLSENGHVVDAVRTAEEALYRAESFNHDLALVDLGLPGMSG--I 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R+ + P++ ++ + Q ++ G DD + KP E+ AR+ A+ RR Sbjct: 61 DLIRQLRSQDKNFPILILTARGNWQDKVEGLSCGADDYLVKPFQFEELEARLNALLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + E G + + + + V + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFTKSTIEAGSLVLDLNRKQATVDEQSLQLTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL LG +++ R GY Sbjct: 181 GDDER-DPNVIEVLVGRLRRKLEAMLGGKLIETVRGQGY 218 >gi|160900848|ref|YP_001566430.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160366432|gb|ABX38045.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 237 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 18/223 (8%) Query: 16 IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL------------EL 63 IA DD + LE + E + SA++ L + +L +L Sbjct: 3 IAALDDDPLQLEMLRQVALETGHSCHTYQTGSALQLELRRESFDLLIVDWHLPDMEGTDL 62 Query: 64 PRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R R H ++P++ I+ ++ G DD + KP+ H E+ AR+AA+ RR Sbjct: 63 VRWARGHVSRELPILIITHRSEEADIVEGLSCGADDFMVKPVRHAELRARMAALLRRAYP 122 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N ++ E GP R + E+ G+ + RE + L N+G+ +++ + A++G Sbjct: 123 VNTQSVLEFGPYRFLTTTNSLEMHGQPIEVTHREYTLALTLFQNQGRLLSREHLREAVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221 + V+ +++HIS+LR L + G S + GY +D Sbjct: 183 -HNAEVQSRSLDTHISRLRALLNLRAGQPYAISAVYGYGYRLD 224 >gi|28210147|ref|NP_781091.1| two-component response regulator [Clostridium tetani E88] gi|28202583|gb|AAO35028.1| two-component response regulator [Clostridium tetani E88] Length = 231 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 85/157 (54%), Gaps = 6/157 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR+HS+VP+I IS S + D+G DD + KP + +LA++ + RR+ S + Sbjct: 70 IRSHSKVPIIFISSRDSDMDQVMAIDNGGDDFITKPFSYDVLLAKIKGVLRRVYGSYAKG 129 Query: 127 ETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +T +++ +++ E +G+ L + E +L +L+ N K V++ + ++ Sbjct: 130 DTDFLKIDDLILYTNKNVLEYKGKKTELSKNEFSLLLHLLKNINKIVSRDTLLGILWSDI 189 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +++N + ++++LRK+L + +++KR GY Sbjct: 190 D-FIDDNTLSVNVTRLRKRLEEIGITNAIETKRGQGY 225 >gi|330876294|gb|EGH10443.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. glycinea str. race 4] Length = 225 Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 106/219 (48%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + + D++ I+ L G G L Sbjct: 3 LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGLPGIGG--L 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R + P++ ++ + Q ++ +G DD V K E+ AR+ A RR Sbjct: 61 DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKTFQFEELEARLNAWLRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTIMAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + NV+E + +LR+KL + + F P+++ R +GY Sbjct: 181 DDDER-DPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGY 218 >gi|168179677|ref|ZP_02614341.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182669403|gb|EDT81379.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 221 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 19/199 (9%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQ 85 +L A + + A+E F G + ++ LP+I IR S VP+I ++ + Sbjct: 27 YLVEVATDGLIAVEMFRRGNFDLIVLDVMLPKIDGFVVCEIIRKESSVPIIMLTALGEEE 86 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEV 142 + F+ VDD + KP ++ RV A+ RR L+ +N+ I ++ V Sbjct: 87 DEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANGLEENNSTLTFEEIIIYPSNYKTLV 146 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + L +E +ILE L++N G+ ++ + + I+G +D + V+++HI K LR Sbjct: 147 NNKEIELTYKEFQILEILISNVGRVFSRESLLNQIWG-YDYFGDTRVIDTHI----KNLR 201 Query: 203 NKLGFDPVDSKRFLGYSID 221 KL D + + R +GY I+ Sbjct: 202 QKLNIDYIRTIRGVGYKIE 220 >gi|319947261|ref|ZP_08021494.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319746503|gb|EFV98763.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 224 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R KV+ N G + Sbjct: 73 TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKVNENTLSYGNV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V V+G+ L +E +L Y + N+ + KTQIF ++G FD +VVE Sbjct: 133 TVNLSTNSTLVEGKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + R +GY Sbjct: 192 VYVSKIRKKLKGTDFAKNLQTLRSVGY 218 >gi|171911888|ref|ZP_02927358.1| two component transcriptional regulator, winged helix family protein [Verrucomicrobium spinosum DSM 4136] Length = 227 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 83/161 (51%), Gaps = 16/161 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R P++ ++ ++Q + + G DD + KP E+LAR+ A+ RR Sbjct: 77 LRPTKTSPVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAA-----G 131 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + P+ D R +GE P+ RE ++EYL ++G+ V++T ++ ++ Sbjct: 132 QPQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFD- 190 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D++ N+++ H+S LRKKL +L + ++R GYSI+ Sbjct: 191 EDDSTLSNLLDVHVSNLRKKLAPEL----ITTRRGHGYSIE 227 >gi|325679466|ref|ZP_08159046.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324108753|gb|EGC02989.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 224 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 10/165 (6%) Query: 44 EDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 E+VS I L+ G + + ++ VP+I S + +D F G DD V KP Sbjct: 43 EEVSLILLDLMLPGLSGEAVIKGLKEKKNVPVIVTSAIHDVSKKVDLFALGADDYVTKPF 102 Query: 104 HHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRIL 157 H+ E+LAR++A R + + G + + D G L + E +L Sbjct: 103 HNEELLARISARLRNVLPEQTK---GDVLTYKDIILNKSEHTVSCHGTAVELSKHEFALL 159 Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 E M + + K++I+ ++ ++ + ++N + HISKLRKKL+ Sbjct: 160 ELFMESPKRTCTKSRIYDTVWD-YENSADDNTLNVHISKLRKKLK 203 >gi|242243834|ref|ZP_04798278.1| hemin DNA-binding response regulator [Staphylococcus epidermidis W23144] gi|242232732|gb|EES35044.1| hemin DNA-binding response regulator [Staphylococcus epidermidis W23144] gi|319401656|gb|EFV89865.1| response regulator [Staphylococcus epidermidis FRI909] Length = 224 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 8/197 (4%) Query: 28 GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTT 87 G SL+F E + D++ ++ + G EL + ++ +P+I ++ +L Sbjct: 34 GEASLDFLE----NKNVDIAIVDIMM--SGMDGFELCQTLKDDYHIPVIMLTARDALSDK 87 Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEV 146 F SG DD V KP +E+L R+ A+ RR ++ ++N + G + + + V + Sbjct: 88 ERAFLSGTDDYVTKPFEVKELLFRIKAVLRRYQINADNELQLGNLILNQSYMEITVGSKT 147 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 LP +E ++L L +N + I I+G FD ++ V+ HI +LR++L Sbjct: 148 MNLPNKEFQLLFLLASNPKHIFTRDDIIEKIWG-FDYEGDDRTVDVHIKRLRQRLSKLKS 206 Query: 207 FDPVDSKRFLGYSIDWN 223 + + R GY +D N Sbjct: 207 SVSIQTVRGQGYRVDQN 223 >gi|166032709|ref|ZP_02235538.1| hypothetical protein DORFOR_02424 [Dorea formicigenerans ATCC 27755] gi|166027066|gb|EDR45823.1| hypothetical protein DORFOR_02424 [Dorea formicigenerans ATCC 27755] Length = 217 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 96/191 (50%), Gaps = 15/191 (7%) Query: 21 DDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL------IG--KGEKVLELPRIIRAHSQ 72 D + +G+ ++ L +S +E + I++F+ IG G+ + L + ++ + + Sbjct: 17 DTSLQNQGYTTI-----LAASRKEAIKNIDSFVDLLIVDIGLPDGDGI-NLYQELQKNGR 70 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P I ++ + L FD G DD V KP + +L R+ + +R K + N G + Sbjct: 71 IPAIFLTAKDDEKDMLKAFDIGADDYVVKPFSIKVLLKRMEVVLKR-KSNENVFMCGQVI 129 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 ++SD + V L +E ++LEY + N+ + + K I I+G+ E ++ N + Sbjct: 130 LYSDRKQVFVGKTEISLTLKEYQLLEYFIMNQNQVLTKEMIMENIWGIDSEFIDPNTISV 189 Query: 193 HISKLRKKLRN 203 IS+L+KKL + Sbjct: 190 MISRLKKKLND 200 >gi|110800417|ref|YP_694579.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|110675064|gb|ABG84051.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] Length = 226 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 7/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR SQVP+I ++ S L + G DD V KP + + +LAR+A+I +R S Sbjct: 65 ICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKR-TYS 123 Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ET ++ + +GEV L + E +IL L+ N+GK V++ I ++ Sbjct: 124 GIEGETEIFNCRELKYNMSTSEVSFKGEVEELTKNESKILNILIRNKGKIVSRDNIIKSL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +E +++N + ++++LR+K+ + +KR GY Sbjct: 184 WQ-SNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGY 223 >gi|225573147|ref|ZP_03781902.1| hypothetical protein RUMHYD_01338 [Blautia hydrogenotrophica DSM 10507] gi|225039502|gb|EEG49748.1| hypothetical protein RUMHYD_01338 [Blautia hydrogenotrophica DSM 10507] Length = 223 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 82/161 (50%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR S VP++ ++ Q L SG +D + KP H +LAR + R ++ Sbjct: 62 MEVLRRIRLQSNVPVLILTALGDTQNELSSLRSGANDYMAKPFHPEVLLARAENLMRMVR 121 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S++ + G + V V+G+ L +E ++L YLM NR + + QI ++G Sbjct: 122 NKSDSHLQVGEVVVDEKKCRVYVRGKEISLTHKEYQLLVYLMQNRDIVLTRDQILEKVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + +++HI LR L++ + + + R +GY++ Sbjct: 182 -FDYEGDIRTIDTHIKMLRMDLKSCGSY--IRTIRGMGYTL 219 >gi|319424630|gb|ADV52704.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 219 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 7/150 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131 +P++ ++ + +D +G DD + KP H E+LAR+ + RR ++N + + Sbjct: 73 MPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHFGRADNVLQHAGV 132 Query: 132 RVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + D + V G V L + E R+L YLM N K V+K+++ IY D+ + NV+ Sbjct: 133 SLDVDKQAVTNVDGAVIELTKIEYRLLHYLMVNPSKIVSKSELSERIYE-EDQIKDSNVI 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++++LR+ +LG D ++++R GY + Sbjct: 192 EVYVNRLRQ----RLGKDYIETRRGQGYRL 217 >gi|322377335|ref|ZP_08051826.1| DNA-binding response regulator VncR [Streptococcus sp. M334] gi|321281535|gb|EFX58544.1| DNA-binding response regulator VncR [Streptococcus sp. M334] Length = 218 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 83/167 (49%), Gaps = 16/167 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 60 LEVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRY- 118 Query: 121 VSNNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +TG I + D + + G+ + +E IL+YL+ N G+ + ++QI Sbjct: 119 -----YDTGRIFSYKDAKVDFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQII 173 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++ DE + V++ +I K+LR KL D + + R +GY ++ Sbjct: 174 DAVWKATDEVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216 >gi|323528170|ref|YP_004230322.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385172|gb|ADX57262.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 231 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 6/150 (4%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIR 132 P++ ++ + S++ + D G DD + KP E+ AR A+ RR + A+ G + Sbjct: 82 PVLMLTAHGSVEERVRGLDLGADDYLAKPFALTELEARARALLRRGHGQEASLAQCGTLT 141 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 S R + GE L RER +LE LM G+ + K + I+GL DE+V + +E Sbjct: 142 YDSVDRGFTLDGEPLALTPRERSVLEVLMLRNGRAINKETLSEKIFGL-DESVNADAIEI 200 Query: 193 HISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 ++ +LRKKL R+ +G + + R LGY ++ Sbjct: 201 YVHRLRKKLERSSVG---IVTLRGLGYLLE 227 >gi|241767752|ref|ZP_04765363.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241361239|gb|EER57832.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 143 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 D+G DD + KP E+ AR+ A+ RR + +++R G + + R + G + LP Sbjct: 9 LDAGADDYLGKPFDLAEVEARLRALVRRTQGTDDRTAAGALVLDRRARRFMLHGALLELP 68 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 RE +L LM G V+K + + G FD+++ +N +E+ IS+LRKKL + Sbjct: 69 AREFEVLWELMTPPGHVVSKRTLSDKLSG-FDDSLGDNALEAFISRLRKKLAGSGA--SI 125 Query: 211 DSKRFLGYSIDWN 223 + R LGY ++ + Sbjct: 126 RTLRGLGYMLEAD 138 >gi|225027390|ref|ZP_03716582.1| hypothetical protein EUBHAL_01646 [Eubacterium hallii DSM 3353] gi|224955287|gb|EEG36496.1| hypothetical protein EUBHAL_01646 [Eubacterium hallii DSM 3353] Length = 236 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 3/153 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127 A Q+P++ I+ S F SG DD + KP++ E++ RV A+ RR ++ N ++ Sbjct: 83 AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G D E LP++E +L L A+ G+ K Q+ ++G EA + Sbjct: 143 IGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYETEA-DP 201 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +E HI ++R++L++ F+ V + R +GY + Sbjct: 202 HTIEVHIGRIRERLKDNPDFEIV-TMRGIGYKV 233 >gi|57865389|ref|YP_189511.1| DNA-binding response regulator [Staphylococcus epidermidis RP62A] gi|251811932|ref|ZP_04826405.1| hemin DNA-binding response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282875223|ref|ZP_06284096.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293367070|ref|ZP_06613742.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|81673433|sp|Q5HLN2|HSSR_STAEQ RecName: Full=Heme response regulator hssR gi|57636047|gb|AAW52835.1| DNA-binding response regulator [Staphylococcus epidermidis RP62A] gi|251804531|gb|EES57188.1| hemin DNA-binding response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281295988|gb|EFA88509.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291318800|gb|EFE59174.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329733807|gb|EGG70131.1| heme response regulator HssR [Staphylococcus epidermidis VCU028] gi|329735102|gb|EGG71398.1| heme response regulator HssR [Staphylococcus epidermidis VCU045] Length = 224 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 8/197 (4%) Query: 28 GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTT 87 G SL+F E + D++ ++ + G EL + ++ +P+I ++ +L Sbjct: 34 GEASLDFLE----NKNVDIAIVDIMM--SGMDGFELCQTLKDDYHIPVIMLTARDALSDK 87 Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEV 146 F SG DD V KP +E+L R+ A+ RR ++ ++N + G + + + V + Sbjct: 88 ERAFLSGTDDYVTKPFEVKELLFRIKAVLRRYQINADNELQLGNLILNQSYMEITVGSKT 147 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 LP +E ++L L +N + I I+G FD ++ V+ HI +LR++L Sbjct: 148 MNLPNKEFQLLFLLASNPKHIFTRDDIIEKIWG-FDYEGDDRTVDVHIKRLRQRLSKLKS 206 Query: 207 FDPVDSKRFLGYSIDWN 223 + + R GY +D N Sbjct: 207 SVSIQTVRGQGYRVDQN 223 >gi|327479451|gb|AEA82761.1| DNA-binding response regulator [Pseudomonas stutzeri DSM 4166] Length = 219 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 103/220 (46%), Gaps = 28/220 (12%) Query: 9 ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 AL +GY + DG S L N FE + + +E L R+ Sbjct: 19 ALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGLEL-----------LKRLR 67 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 A + VP++ ++ + + D+G DD + KP E+ AR+ A+ RR S NR E Sbjct: 68 AAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRR---SFNRPE 124 Query: 128 TGPIR----VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 P+ + D + +V QG LPR+E +L L+A G+ + + ++ +YG + Sbjct: 125 --PVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG-W 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE VE N +E HI LRKK +L + + R +GY +D Sbjct: 182 DEDVESNALEVHIHHLRKKFFPEL----IRTVRGVGYLVD 217 >gi|312113420|ref|YP_004011016.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311218549|gb|ADP69917.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 221 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 101/216 (46%), Gaps = 16/216 (7%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66 +RAL GY+ +G + W + + + I + + + + L R Sbjct: 17 ERALQASGYVVETAGEG----------EDAWFRGDTEDYAAVILDLGLPRMDGLSVLKRW 66 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125 A ++P++ ++ S +D D+G DD + KP H E+L+R+ AI RR +++ Sbjct: 67 RAADRRMPVLILTARGSWAERVDGIDAGADDYLPKPFHMEELLSRLRAIIRRSAGAASSL 126 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 G + V V+G L E R++ YL+ +RG+ V + ++ A+YG DE Sbjct: 127 VSIGDVTVDDRQMRVSVRGVPVALSALEYRVVAYLVLHRGRVVPQHELEEAVYG-HDEDH 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + N +E L ++R KLG + ++R GY ++ Sbjct: 186 DSNALEV----LMGRVRRKLGVPVIGTRRGFGYIVE 217 >gi|218281586|ref|ZP_03488007.1| hypothetical protein EUBIFOR_00572 [Eubacterium biforme DSM 3989] gi|218217278|gb|EEC90816.1| hypothetical protein EUBIFOR_00572 [Eubacterium biforme DSM 3989] Length = 231 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSN- 123 IR S+VP+I IS + + G DD V KP + A++ AI RR VSN Sbjct: 76 IREESKVPIIFISSATDNMSIVMAISKGADDFVVKPFDLNVLAAKITAILRRSYDFVSNH 135 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N E IR D Q L + E +IL LM +G V++ ++ ++ D Sbjct: 136 NILEYQGIRFNLDDNTVSFQSSQIELSKNEAKILRLLMEKKGTIVSRDRLMEYLWKT-DF 194 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+EN + ++++LRKKL + D + +K+ LGY + Sbjct: 195 YVDENALSVNVNRLRKKLESIGIVDFIQTKKGLGYKV 231 >gi|108762500|ref|YP_633364.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108466380|gb|ABF91565.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 224 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 3/167 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ + +P + + ++ IS + + D+G DD + KP H E+ AR+ ++ Sbjct: 57 GDGLCLIPELRAMQPEAGVLVISAMGDVPERVAGLDAGADDYMGKPFHADELRARIRSVL 116 Query: 117 RRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + G I R VQG L RRE +L LM + V + + Sbjct: 117 RRPAQARQLQPVRCGAIEYDLGSRQMTVQGRPLLLRRREASLLAALMRRARRVVQRDTLI 176 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +YG FDE N +E+HIS+LR++L + + R +GY ID Sbjct: 177 KEVYG-FDEEPSANTLEAHISRLRRRLEDCGAGVVLHPVRGVGYLID 222 >gi|17987620|ref|NP_540254.1| transcriptional regulatory protein PhoP [Brucella melitensis bv. 1 str. 16M] gi|62289566|ref|YP_221359.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|82699496|ref|YP_414070.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|189023825|ref|YP_001934593.1| PhoP family transcriptional regulator [Brucella abortus S19] gi|225852129|ref|YP_002732362.1| winged helix family two component transcriptional regulator [Brucella melitensis ATCC 23457] gi|237815063|ref|ZP_04594061.1| transcriptional regulatory protein PhoP [Brucella abortus str. 2308 A] gi|254688887|ref|ZP_05152141.1| two component transcriptional regulator, winged helix family protein [Brucella abortus bv. 6 str. 870] gi|254693368|ref|ZP_05155196.1| two component transcriptional regulator, winged helix family protein [Brucella abortus bv. 3 str. Tulya] gi|254697019|ref|ZP_05158847.1| two component transcriptional regulator, winged helix family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254729918|ref|ZP_05188496.1| two component transcriptional regulator, winged helix family protein [Brucella abortus bv. 4 str. 292] gi|256044306|ref|ZP_05447210.1| two component transcriptional regulator, winged helix family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256113143|ref|ZP_05454020.1| two component transcriptional regulator, winged helix family protein [Brucella melitensis bv. 3 str. Ether] gi|256257135|ref|ZP_05462671.1| two component transcriptional regulator, winged helix family protein [Brucella abortus bv. 9 str. C68] gi|256264359|ref|ZP_05466891.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 2 str. 63/9] gi|260545673|ref|ZP_05821414.1| transcriptional regulatory protein PHOP [Brucella abortus NCTC 8038] gi|260563660|ref|ZP_05834146.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 1 str. 16M] gi|260754372|ref|ZP_05866720.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260757591|ref|ZP_05869939.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260761417|ref|ZP_05873760.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260883397|ref|ZP_05895011.1| FeuP [Brucella abortus bv. 9 str. C68] gi|261213618|ref|ZP_05927899.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|265990718|ref|ZP_06103275.1| FeuP [Brucella melitensis bv. 1 str. Rev.1] gi|265994556|ref|ZP_06107113.1| FeuP [Brucella melitensis bv. 3 str. Ether] gi|297247981|ref|ZP_06931699.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] gi|18418609|gb|AAL68973.1|AF007804_1 FeuP [Brucella abortus] gi|17983330|gb|AAL52518.1| transcriptional regulatory protein phop [Brucella melitensis bv. 1 str. 16M] gi|62195698|gb|AAX73998.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|82615597|emb|CAJ10584.1| Response regulator receiver:Transcriptional regulatory protein, C terminal:Sugar transporter superfamily [Brucella melitensis biovar Abortus 2308] gi|189019397|gb|ACD72119.1| Transcriptional regulatory protein PHOP [Brucella abortus S19] gi|225640494|gb|ACO00408.1| two component transcriptional regulator, winged helix family protein [Brucella melitensis ATCC 23457] gi|237789900|gb|EEP64110.1| transcriptional regulatory protein PhoP [Brucella abortus str. 2308 A] gi|260097080|gb|EEW80955.1| transcriptional regulatory protein PHOP [Brucella abortus NCTC 8038] gi|260153676|gb|EEW88768.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 1 str. 16M] gi|260667909|gb|EEX54849.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671849|gb|EEX58670.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260674480|gb|EEX61301.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872925|gb|EEX79994.1| FeuP [Brucella abortus bv. 9 str. C68] gi|260915225|gb|EEX82086.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|262765669|gb|EEZ11458.1| FeuP [Brucella melitensis bv. 3 str. Ether] gi|263001502|gb|EEZ14077.1| FeuP [Brucella melitensis bv. 1 str. Rev.1] gi|263094652|gb|EEZ18431.1| transcriptional regulatory protein PHOP [Brucella melitensis bv. 2 str. 63/9] gi|297175150|gb|EFH34497.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] Length = 229 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 8/155 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 R+ +P++ ++ + D+G DD V KP H E+LAR+ A+ RR +++ Sbjct: 68 RSGRTIPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAGHASSEF 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 GP+ + + + G L E R+L Y+M + + V++T++ +Y FD Sbjct: 128 VCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYDQDFDR-- 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E + +LRK K+G D +++ R +GY + Sbjct: 186 DSNTIEVFVGRLRK----KMGVDLIETVRGMGYRM 216 >gi|22537931|ref|NP_688782.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|25011874|ref|NP_736269.1| hypothetical protein gbs1835 [Streptococcus agalactiae NEM316] gi|76798833|ref|ZP_00781044.1| Transcriptional regulatory protein dltR [Streptococcus agalactiae 18RS21] gi|77409021|ref|ZP_00785740.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|61222656|sp|P0A4H9|DLTR_STRA3 RecName: Full=Transcriptional regulatory protein dltR gi|61222657|sp|P0A4I0|DLTR_STRA5 RecName: Full=Transcriptional regulatory protein dltR gi|22534830|gb|AAN00655.1|AE014273_2 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|18076414|emb|CAC83083.1| putative response regulator, DltR [Streptococcus agalactiae] gi|24413415|emb|CAD47494.1| Unknown [Streptococcus agalactiae NEM316] gi|76585807|gb|EAO62354.1| Transcriptional regulatory protein dltR [Streptococcus agalactiae 18RS21] gi|77172362|gb|EAO75512.1| DNA-binding response regulator [Streptococcus agalactiae COH1] Length = 224 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 109/223 (48%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++++D + + AL D G S++ F+ + E++ + + V + ++ K + Sbjct: 3 LLVVEDEKSIAEAIQALLADKGYSVDLAFDGDDGLEYILTGLYDLV--LLDIMLPKRSGL 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R+ A + P+I ++ ++ D G DD + KP E+LAR+ R+ Sbjct: 61 SVLKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N+ G IR+ +D + E + L +E ++E M N + + K Q+ S ++G Sbjct: 121 LIRANQLRLGNIRLNTDSHELESKESSVKLSNKEFLLMEVFMRNAKQIIPKNQLISKVWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 D + E N +E IS LRKKLR K + + +K F GYS++ Sbjct: 181 PSDNS-EYNQLEVFISFLRKKLRFLKADIEIITTKGF-GYSLE 221 >gi|315122690|ref|YP_004063179.1| two component response regulator [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496092|gb|ADR52691.1| two component response regulator [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 236 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 15/190 (7%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74 Y+ G+DGV L +++ L D+S E + L + RI P Sbjct: 28 YVTNLGEDGVDLGKI--YDYDIILLDLNLPDISGFEVL------RTLRMARI-----STP 74 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRV 133 + +S S++ + G DD ++KP++ E++AR+ AI RR + + + TG + V Sbjct: 75 VCILSGMSSIEDKVRGLGYGADDYISKPLNKDELVARIHAIVRRSRGHAQSVIATGDLVV 134 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D + EVQG L +E +++E L + + K + +Y DE E +++ Sbjct: 135 NLDAKTVEVQGHRIHLTGKEYQMIELLSLRKNTTLTKEMFLNHLYDGRDEP-EVKIIDVF 193 Query: 194 ISKLRKKLRN 203 I KLRKKL N Sbjct: 194 ICKLRKKLSN 203 >gi|260892544|ref|YP_003238641.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260864685|gb|ACX51791.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 236 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 76/141 (53%), Gaps = 2/141 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120 E+ R IR++SQ+P+I ++ LQ L F+ G DD V KP +E++ARV A+ RR + Sbjct: 68 EVCRQIRSNSQLPVIMLTAKGELQDKLQGFELGADDYVVKPFDPQELIARVKAVLRRAGE 127 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R + + + + EV G L +RE +L +L ++ G+ + + ++G Sbjct: 128 TKPRRVDLPDLTIDLESYVVEVAGRKVELTKRETELLYFLASHPGRVFTREFLLQRVWG- 186 Query: 181 FDEAVEENVVESHISKLRKKL 201 F+ V+ H+++LR+KL Sbjct: 187 FEFPGNTRTVDVHVNRLREKL 207 >gi|238925636|ref|YP_002939153.1| hypothetical protein EUBREC_3293 [Eubacterium rectale ATCC 33656] gi|238877312|gb|ACR77019.1| hypothetical protein EUBREC_3293 [Eubacterium rectale ATCC 33656] Length = 223 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127 A Q+P++ I+ S F SG DD + KP++ E++ RV A+ RR ++ N ++ Sbjct: 70 AGYQIPVLMITAKSSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 129 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + D E LP++E +L L A+ G+ K Q+ ++G EA + Sbjct: 130 IGSTELDYDAMTVVTGDEALVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYETEA-DP 188 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +E HI ++R++ + F+ V + R LGY + Sbjct: 189 HTIEVHIGRIRERFKENPDFEIV-TMRGLGYKV 220 >gi|253579380|ref|ZP_04856650.1| two component transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251849478|gb|EES77438.1| two component transcriptional regulator [Ruminococcus sp. 5_1_39BFAA] Length = 220 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 4/164 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G E + IR P++ ++ + L G DD + KP +E+ ARVAA Sbjct: 56 GTDGFEFCKQIRNMVDCPILFLTAKTLEEDILFGLGIGADDYITKPFRIQELRARVAAHL 115 Query: 117 RRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR K ++ + IR + V + PL + E I EYL NRG+ K QI+ Sbjct: 116 RREKREHHSTLSFEPDIRFDLSAKVLYVSEQPVPLTKSEYSICEYLAKNRGQVFTKEQIY 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 A++G FD + + + +HI +R KL + PV + +GY Sbjct: 176 EAVFG-FDGIGDNSTISTHIKNIRAKLEH-FKISPVSTVWGIGY 217 >gi|241766482|ref|ZP_04764351.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241363311|gb|EER58847.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 224 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 88/163 (53%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ + +R+ S +P++ ++ S++ + D G DD + KP +E+ ARV A+ RR Sbjct: 61 LEVLKKLRSRGSALPVLILTAADSVEERVKGLDFGADDYMAKPFSLQELEARVRALTRRG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + +++ + GP+ GR + G++ L RE +LE L+ G+ V+K Q+ + Sbjct: 121 MGGTSSAIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLC 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E +I +LRKK+ G + + R LGY ++ Sbjct: 181 E-WGEEVSNNAIEVYIHRLRKKIEK--GPIRIATVRGLGYCLE 220 >gi|89055982|ref|YP_511433.1| two component transcriptional regulator [Jannaschia sp. CCS1] gi|88865531|gb|ABD56408.1| two component transcriptional regulator, winged helix family [Jannaschia sp. CCS1] Length = 219 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 8/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 F+L++D A + D + G DG +++ +L E + A D+ ++ L G G Sbjct: 3 FLLVEDNAELADSVVQRLGLDGHAVDHAGTLAEAEDCLAVAEYDLILLDVMLPDGDGRDR 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R + P+I ++ + + D G DD + KP E+ AR A+ RR Sbjct: 63 LA---TWRGRLETPVIVLTARSQISDRVGALDQGADDYLTKPFDFSELEARCRAVLRRRG 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + T VF GE V L RE R+LE N G ++K+Q+ ++ Sbjct: 120 GAAKNEVTLGDAVFDPTAGTLRAGEQVVDLRNREIRLLEVFARNPGHILSKSQLMDRLFS 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V EN +E ++ +LR+KL +++G +++ R GY I Sbjct: 180 -HDADVTENAIEVYVGRLRRKL-DEVGV-KIETVRGAGYRI 217 >gi|71066630|ref|YP_265357.1| OmpR family two-component transcriptional regulator [Psychrobacter arcticus 273-4] gi|71039615|gb|AAZ19923.1| probable two-component transcriptional response regulator (ompR family) [Psychrobacter arcticus 273-4] Length = 224 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + DG + G+ ++ F+ + E D ++ + KG+ + Sbjct: 4 ILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEMALQDGMFDAVLLD-LTLPKGDGMT 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L H P++ I+ ++ + ++G DD + KP E++AR+ A+ RR + Sbjct: 63 VLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVIARLQALMRRSQG 122 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S G + + QG+ L +E ILE ++ + + ++ + +YG Sbjct: 123 RSQPEVRYGEVAYQPHNQQVSYQGKTVELTIKEVAILEQMLTHPKQIHSRASLEDKLYG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + +E N +E HI LRKKL N D + +KR +GY ++ Sbjct: 182 WKQDIESNAIEVHIHHLRKKLGN----DFILTKRGIGYYLN 218 >gi|226330499|ref|ZP_03806017.1| hypothetical protein PROPEN_04417 [Proteus penneri ATCC 35198] gi|225201294|gb|EEG83648.1| hypothetical protein PROPEN_04417 [Proteus penneri ATCC 35198] Length = 224 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 104/222 (46%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D L++ F D G ++ + + + DV+ ++ L E + Sbjct: 3 ILIIEDNILLRHHLSVQFRDAGHQVDAAEDAKEADSFIAEGTPDVAIVDLGL--PDEDGI 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L R R ++ +P++ ++ S Q + ++G DD V KP H EI+AR+ A+ RR + Sbjct: 61 SLIRRWRENNITLPIMVLTARESWQEKVSALNAGADDYVTKPFHFEEIIARIQALMRRNM 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ P + ++ + GE L E ILE LM N+ K V+K + +Y Sbjct: 121 GIASQTLAIEPFELDLSRKEFMISGEQIKLTAFEYTILETLMRNQNKVVSKDALMRQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E + ++ + +LRKK+ K D V + R GY D Sbjct: 181 -DAELKESHTIDVLMGRLRKKILEKYPDDVVVTVRGQGYRFD 221 >gi|218781860|ref|YP_002433178.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218763244|gb|ACL05710.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 235 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 4/169 (2%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G + L R IR S VP+I ++ L + G DD V KP RE++ARV Sbjct: 62 LMLPGADGVTLCREIRTFSAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARV 121 Query: 113 AAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 A+ RR + A GP+ + + V G+ + + E +L MA+ GK ++ Sbjct: 122 KAVLRRGGEEPHEAAIHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKVFSR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218 ++ + I G E + N ++ HI LRKKL + G +P++S +GY Sbjct: 182 DELIAKIQGRTYEGYDRN-IDWHIKNLRKKLIAAQPGLEPIESVYGVGY 229 >gi|117919068|ref|YP_868260.1| two component transcriptional regulator [Shewanella sp. ANA-3] gi|117611400|gb|ABK46854.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 224 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 9/150 (6%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----YRRLKVSNNRAET 128 P+I ++ ++ F++G DD + KP H +E+LAR+ A+ + RL + + Sbjct: 73 TPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAHGRLNNPSKQLSY 132 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + + V ++ L E R+L+ + + K ++K Q+ +Y FD+ E N Sbjct: 133 GGVTLDEAEQTVSVGEHLYELTAMEFRLLKIFLMSPKKLLSKAQLTDKLYQ-FDDEKESN 191 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VVE +++ LRK KLG ++++R GY Sbjct: 192 VVEVYVTHLRK----KLGKTAIETRRGQGY 217 >gi|18311314|ref|NP_563248.1| two-component response regulator [Clostridium perfringens str. 13] gi|168205161|ref|ZP_02631166.1| response regulator [Clostridium perfringens E str. JGS1987] gi|168210364|ref|ZP_02635989.1| response regulator [Clostridium perfringens B str. ATCC 3626] gi|168213243|ref|ZP_02638868.1| response regulator [Clostridium perfringens CPE str. F4969] gi|168216703|ref|ZP_02642328.1| response regulator [Clostridium perfringens NCTC 8239] gi|182625784|ref|ZP_02953551.1| response regulator [Clostridium perfringens D str. JGS1721] gi|18145997|dbj|BAB82038.1| two-component response regulator [Clostridium perfringens str. 13] gi|170663254|gb|EDT15937.1| response regulator [Clostridium perfringens E str. JGS1987] gi|170711562|gb|EDT23744.1| response regulator [Clostridium perfringens B str. ATCC 3626] gi|170715305|gb|EDT27487.1| response regulator [Clostridium perfringens CPE str. F4969] gi|177908940|gb|EDT71427.1| response regulator [Clostridium perfringens D str. JGS1721] gi|182381236|gb|EDT78715.1| response regulator [Clostridium perfringens NCTC 8239] Length = 230 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 7/146 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ ++IRA S VP+I I+ + L+ FD G DD V KP ++++AR+ AI RR Sbjct: 61 EVCKVIRAKSCVPIIMITAKTEEEDLLEGFDIGADDYVTKPFSVKQLIARIKAIIRRSTP 120 Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N G +++ D R+ V+ E+ L E IL L + K + +I Sbjct: 121 CPNEGSDILVFNNGELKINVDTREVWVRDELITLTSTEFNILLCLSSYPKKIFTRDEIIE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 + G ++ + V++SHI LR K+ Sbjct: 181 LVLGDKSDSF-DRVIDSHIKNLRGKI 205 >gi|157150145|ref|YP_001450361.1| transcriptional regulatory protein CiaR [Streptococcus gordonii str. Challis substr. CH1] gi|157074939|gb|ABV09622.1| Transcriptional regulatory protein CiaR [Streptococcus gordonii str. Challis substr. CH1] Length = 224 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K + N G + Sbjct: 73 TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNENNLSYGDV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V V G+ L +E +L Y + N+ + KTQIF ++G FD +VVE Sbjct: 133 TVNLSTNTTLVNGKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + + R +GY Sbjct: 192 VYVSKIRKKLKGTTFANNMQTLRSVGY 218 >gi|160942544|ref|ZP_02089792.1| hypothetical protein FAEPRAM212_00020 [Faecalibacterium prausnitzii M21/2] gi|158446160|gb|EDP23163.1| hypothetical protein FAEPRAM212_00020 [Faecalibacterium prausnitzii M21/2] Length = 236 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 3/153 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127 A Q+P++ I+ S F SG DD + KP++ E++ RV A+ RR ++ N ++ Sbjct: 83 AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G D E LP++E +L L A+ G+ K Q+ ++G EA + Sbjct: 143 IGSTEFDYDAMTVTTDKESLALPKKEFLLLYKLAASPGRIFTKQQLMDEVWGYETEA-DP 201 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +E HI ++R++L++ F+ V + R +GY + Sbjct: 202 HTIEVHIGRIRERLKDNPDFEIV-TMRGIGYKV 233 >gi|120597039|ref|YP_961613.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|120557132|gb|ABM23059.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] Length = 219 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 82/150 (54%), Gaps = 7/150 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131 +P++ ++ + +D +G DD + KP H E+LAR+ + RR ++N + + Sbjct: 73 MPVLILTARDAWHERVDGLKAGADDYLGKPFHIEELLARLEVLIRRHFGRADNVLQHAGV 132 Query: 132 RVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + D + V G V L + E R+L YLM N K V+K+++ IY D+ + NV+ Sbjct: 133 SLDVDKQAVTNVDGAVIELTKIEYRLLHYLMVNPSKIVSKSELSERIYE-EDQIKDSNVI 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++++LR+ +LG D ++++R GY + Sbjct: 192 EVYVNRLRQ----RLGKDYIETRRGQGYRL 217 >gi|319939370|ref|ZP_08013730.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV] gi|319811356|gb|EFW07651.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV] Length = 233 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 21/203 (10%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 +VK+GY + + +G +LE E + R D+ ++ L LE+ R IR Sbjct: 21 MVKEGYEVV-----TAFDGREALEMFE----AERPDILILDLML--PEMDGLEVARTIRK 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAE 127 S VP+I +S S + + G DD + KP +RE+ ARV AI RR L + N AE Sbjct: 70 TSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRRTDLTIENQEAE 129 Query: 128 TGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 P +++ +D + GE L RE +L +L + G+ + + + ++G Sbjct: 130 AAPTEIVIGDLQILTDAFVVKKHGEELDLTHREFELLHHLATHIGQVMTREHLLETVWG- 188 Query: 181 FDEAVEENVVESHISKLRKKLRN 203 +D + V+ I +LR+K+ + Sbjct: 189 YDYFGDVRTVDVTIRRLREKIED 211 >gi|319938113|ref|ZP_08012511.1| two-component system [Coprobacillus sp. 29_1] gi|319806634|gb|EFW03283.1| two-component system [Coprobacillus sp. 29_1] Length = 220 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 85/157 (54%), Gaps = 3/157 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R SQ+P+I ++ + + G DD + KP + +L R+ A+ RR+ Sbjct: 63 LLRELRKESQIPVIMVTSQNNETDEVLSMSFGADDYITKPYNPTLLLLRIEAVLRRMNHE 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N + + + + + E L + E I++YL+ N+GK ++ +I ++ + Sbjct: 123 VNVLKYHDLLLVPERGILKCHDESLILTKNEMLIMKYLIVNQGKIASREEIMMDLWD-SE 181 Query: 183 EAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 E V++N + ++S+LR KLR+ LG+ D +++++ LGY Sbjct: 182 EFVDDNTLTVNMSRLRNKLRS-LGYGDAIETRKGLGY 217 >gi|114564455|ref|YP_751969.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114335748|gb|ABI73130.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 224 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 79/150 (52%), Gaps = 9/150 (6%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----YRRLKVSNNRAET 128 P+I ++ ++ F++G DD + KP H +E+LAR+ A+ + R+ S+ + Sbjct: 73 TPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAHGRVNSSSKQLCY 132 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 + + + + V ++ L E R+L+ + + K ++K Q+ +Y FD+ E N Sbjct: 133 AGVNLDENEQKVTVGEHIYELTSMEFRLLKIFLMSPKKLLSKQQLTDKLYQ-FDDEKESN 191 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VVE +++ LRK KLG ++++R GY Sbjct: 192 VVEVYVTHLRK----KLGKTAIETRRGQGY 217 >gi|311695506|gb|ADP98379.1| two component transcriptional regulator, winged helix family [marine bacterium HP15] Length = 228 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 84/166 (50%), Gaps = 11/166 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LE+ R +RA + +P++ ++ + F+ G DD + KP + RE++AR+ A+ RR+ Sbjct: 62 LEVLRELRAETHLPVVLLTARGDETDRIVGFEVGADDYIPKPCNPRELVARLQALLRRIA 121 Query: 120 ---KVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K N A T G +RV R L E +L+ L+A+ G V KT + Sbjct: 122 WDQKTEVNAARTYGDLRVEPGHRRIYQNDVAMELTATEYEVLQVLLAHAGSVVRKTDLMQ 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYS 219 G EA + ++ HIS LRKKL N DP +++ R LGYS Sbjct: 182 WALGRRLEAYDRT-LDMHISNLRKKLGND---DPPRIETVRGLGYS 223 >gi|242373720|ref|ZP_04819294.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242348688|gb|EES40290.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 219 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 2/160 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR P+I I+ + D G DD + KP E+LAR+ AI RR + Sbjct: 61 LEICRQIRQEYSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-Q 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + I + D V G L + E +L L NR + + QI ++G Sbjct: 120 PQKDVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F+ VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 179 FNSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218 >gi|294667833|ref|ZP_06733043.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602459|gb|EFF45900.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 227 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 1/158 (0%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R +R S VP+I ++ L + G DD + KP RE++ARV A+ RR + Sbjct: 67 LDICRDLRKESAVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHR 126 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + A +++ D V G L + E R+L L A G+ ++ Q+ +Y Sbjct: 127 HDPHGAPAPGLQIDEDACRASVDGRTLDLTQVEFRLLRTLAAAPGRVYSREQLMGRLYAD 186 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V + V+SH+ LR+KL + G D V S GY Sbjct: 187 H-RIVTDRTVDSHVKNLRRKLADAGGEDWVRSVYGAGY 223 >gi|238754271|ref|ZP_04615628.1| Transcriptional regulatory protein tctD [Yersinia ruckeri ATCC 29473] gi|238707518|gb|EEP99878.1| Transcriptional regulatory protein tctD [Yersinia ruckeri ATCC 29473] Length = 224 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 7/163 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ + +P++ ++ + + +SG DD + KP E+ AR+ A+ RR + V Sbjct: 63 LARLRKRGQTLPVLLLTARTDVADRVKGLNSGADDYLTKPFELDELEARIRALLRRSVGV 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + +G + + L RE +L LM RG+ VAK Q+F I+ L Sbjct: 123 TQQALQFGSLTYHDEGYFL-LDNKPLALTPRESAVLTTLMHRRGRPVAKQQLFEQIFTLS 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223 DEA E+ +E ++ ++RKKL+ G D + + R LGYS++ N Sbjct: 182 DEANPES-IELYVHRVRKKLQ---GTDVAIITLRGLGYSLECN 220 >gi|223042407|ref|ZP_03612456.1| DNA-binding response regulator [Staphylococcus capitis SK14] gi|222444070|gb|EEE50166.1| DNA-binding response regulator [Staphylococcus capitis SK14] Length = 225 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 2/188 (1%) Query: 35 EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94 EE L +E+V+ ++ G EL + ++ +P+I ++ +L F SG Sbjct: 36 EEALHFLEKENVAIAIVDIMMNGINGFELCKTLKEDYDIPVIMLTARDALSDKERAFLSG 95 Query: 95 VDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153 DD V KP +E+L R+ A+ RR ++ + + + G + + + V + LP +E Sbjct: 96 TDDYVTKPFEVKELLFRIKAVLRRYQINAESELKLGNLTLNQPYMEINVDAKTINLPNKE 155 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 ++L L++N + I I+G FD ++ V+ HI +LR+KL + + Sbjct: 156 FQLLFLLVSNPKHIFTRNDIIEKIWG-FDYEGDDRTVDVHIKRLRQKLSRLGASISIHTV 214 Query: 214 RFLGYSID 221 R GY ++ Sbjct: 215 RGQGYKVN 222 >gi|169347039|ref|ZP_02865981.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169296722|gb|EDS78851.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 230 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 7/146 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ ++IRA S VP+I I+ + L+ FD G DD V KP ++++AR+ AI RR Sbjct: 61 EVCKVIRAKSCVPIIMITAKTEEEDLLEGFDIGADDYVTKPFSVKQLIARIKAIIRRSTP 120 Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N G +++ D R+ V+ E+ L E IL L + K + +I Sbjct: 121 CPNEGSDILVFNNGELKINVDTREVWVRDELITLTSTEFNILLCLSSYPKKIFTRGEIIE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 + G ++ + V++SHI LR K+ Sbjct: 181 LVLGDKSDSFDR-VIDSHIKNLRGKI 205 >gi|220929731|ref|YP_002506640.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|220000059|gb|ACL76660.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 226 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 12/148 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S +P+I IS + T +D G DD + KP E++ARV+A RR Sbjct: 62 EILKEVRQFSDIPVIIISAKDMVGTKIDLLKMGADDYITKPFDLGEVVARVSANLRR--- 118 Query: 122 SNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S+ + +T + V +D + V L +E I+E L+ NR K K ++ Sbjct: 119 SHRKTQTEKELRYKDMTVNTDAKRVYVNNTELDLTAKEYGIVELLIKNRNKVFTKATLYE 178 Query: 176 AIYGLFDEAV-EENVVESHISKLRKKLR 202 I+ D + ++N V++HIS LR KL+ Sbjct: 179 TIWQ--DAYLGDDNAVKTHISNLRAKLK 204 >gi|113968960|ref|YP_732753.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|114048902|ref|YP_739452.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|113883644|gb|ABI37696.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] gi|113890344|gb|ABI44395.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 224 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 9/150 (6%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----YRRLKVSNNRAET 128 P+I ++ ++ F++G DD + KP H +E+LAR+ A+ + RL + + Sbjct: 73 TPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHRAHGRLNNPSKQLSY 132 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + + V ++ L E R+L+ + + K ++K Q+ +Y FD+ E N Sbjct: 133 GGVTLDEAEQTVSVGEHLYELTAMEFRLLKIFLMSPKKLLSKAQLTDKLYQ-FDDEKESN 191 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VVE +++ LRK KLG ++++R GY Sbjct: 192 VVEVYVTHLRK----KLGKTAIETRRGQGY 217 >gi|330831451|ref|YP_004394403.1| two-component system, regulatory protein [Aeromonas veronii B565] gi|328806587|gb|AEB51786.1| Two-component system, regulatory protein [Aeromonas veronii B565] Length = 218 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 8/151 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPI 131 P++ ++ L ++ ++G DD + KP E++ARV A+ RR +++ E G + Sbjct: 73 TPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVHALVRRAAGNASSILEIGGV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190 R+ +G L E R+L YLM +RGK V+++++ IY FD + N V Sbjct: 133 RLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYAQDFDR--DSNTV 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E I ++RKK D +++ R LGY I+ Sbjct: 191 EVFIGRIRKKTNP----DLIETVRGLGYRIN 217 >gi|307941515|ref|ZP_07656870.1| phosphate regulon transcriptional regulatory protein PhoB [Roseibium sp. TrichSKD4] gi|307775123|gb|EFO34329.1| phosphate regulon transcriptional regulatory protein PhoB [Roseibium sp. TrichSKD4] Length = 230 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R IR + +P+I ++ + +G DD V KP E++ARV AI R Sbjct: 61 IELCRRIRGREETALLPVIMLTARGEESERIRGLSTGADDYVVKPFSVPELMARVRAILR 120 Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R +V +N +G I + + + L E R+LE+LM + G+ ++ Q+ Sbjct: 121 RASPEVVSNLLRSGDIELDRETHRVRRSSKEIHLGPTEFRLLEFLMTSPGRVYSREQLLD 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK L DP+ + R GY+ + Sbjct: 181 GVWG-HDVYVDERTVDVHVGRLRKALNRGKAKDPIRTVRGAGYAFN 225 >gi|110801908|ref|YP_697454.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682409|gb|ABG85779.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 226 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 7/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR SQVP+I ++ S L + G DD V KP + + +LAR+A+I +R S Sbjct: 65 ICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKR-TYS 123 Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ET ++ + +GEV L + E +IL L+ N+GK V++ I + Sbjct: 124 GIEGETEIFNCRELKYNMSTSEVSFKGEVEELTKNESKILNILIRNKGKIVSRDNIIKTL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +E +++N + ++++LR+K+ + +KR GY Sbjct: 184 WQ-SNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGY 223 >gi|296118440|ref|ZP_06837019.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes DSM 20306] gi|295968581|gb|EFG81827.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes DSM 20306] Length = 230 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 20/200 (10%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ + DG + EFE R DV + L+ G ++ + +RA Sbjct: 21 LRKEGFEPIVAHDGKTALA----EFE-------RHDVDIVLLDLMLPGMSGTDVCKQLRA 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKV 121 S VP+I ++ S + + G DD V KP RE++AR+ A+ RR + Sbjct: 70 TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGGEAAEVDEEF 129 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E G +R+ + V GE +P +E +LEYL+ N G+ + + Q+ I+G Sbjct: 130 EDQILEGGRVRMDVERHTVSVDGEPVSMPLKEFDLLEYLLRNTGRVLTRGQLIDRIWG-A 188 Query: 182 DEAVEENVVESHISKLRKKL 201 D + ++ H+ +LR K+ Sbjct: 189 DYVGDTKTLDVHVKRLRSKI 208 >gi|188578223|ref|YP_001915152.1| DNA-binding response regulator [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522675|gb|ACD60620.1| DNA-binding response regulator [Xanthomonas oryzae pv. oryzae PXO99A] Length = 203 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 6/131 (4%) Query: 92 DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLP 150 D G DD + KP E+LAR A+ RR A + G +R+ G G L Sbjct: 63 DVGADDYLGKPFDTNELLARTRALLRRSAGRTQPALQAGALRLDPAGMSVRWHGRDLDLT 122 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 RRE +L LM RG+ + + +I +YG +DE V N V+ H+ +LR+KL + + Sbjct: 123 RREFALLWLLMEQRGRPIGRERIQQHLYG-WDEDVASNAVDVHVHQLRRKLSAAV----I 177 Query: 211 DSKRFLGYSID 221 R +GY++D Sbjct: 178 RIIRGIGYALD 188 >gi|153010837|ref|YP_001372051.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562725|gb|ABS16222.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] Length = 222 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/160 (33%), Positives = 77/160 (48%), Gaps = 26/160 (16%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 ++VP+I ++ SL + D+G DD + KP E+ AR+ A RR S+ R T P Sbjct: 71 NEVPVIILTANASLDGRIRGLDAGADDYLAKPFELSELEARIRAHLRR---SSQR--TAP 125 Query: 131 I------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R+FS G DP L +E +LE L+ G V+KT + IY Sbjct: 126 VVTCGLLRFDTNTRLFSLGDDP------LSLAPKEHAVLEQLLRRIGTTVSKTTLVQGIY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD +EN +E +I +LRKKL + + R LGY Sbjct: 180 D-FDSETDENAIEIYIHRLRKKLEGSKA--EIVTLRGLGY 216 >gi|154250855|ref|YP_001411679.1| two component transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154154805|gb|ABS62022.1| two component transcriptional regulator, winged helix family [Parvibaculum lavamentivorans DS-1] Length = 272 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + VP+I I+ + D G DD V KP E+LAR+ A+ R Sbjct: 103 IELCRRLRGRPETRNVPIIMITARGEETDRIRGLDIGADDYVTKPFSMTELLARIRAVMR 162 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R++ ++ + G I + L E R+L++L+ + G+ ++ Q+ Sbjct: 163 RIRPALTEDLVTFGDIVIDRAAHRVRRGDREVHLGPTEYRLLDHLIQHPGRVFSREQLLD 222 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D VE V+ H+ +LRK L +K DP+ + R GYS+D Sbjct: 223 TVWG-SDVYVEARTVDVHVGRLRKALNDKGEKDPIRTVRSAGYSLD 267 >gi|332975039|gb|EGK11946.1| two component response regulator [Psychrobacter sp. 1501(2011)] Length = 227 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 105/224 (46%), Gaps = 15/224 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + +G I + G+ ++ F+ + E LQ S + V G G VL Sbjct: 5 LLIEDDSTIAEGLILGLKNHGIMVDWFSDAKLGELALQESMFDAVLLDLTLPNGDGMSVL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R + + V +I D ++ + ++G DD + KP E++AR+ A+ RR Sbjct: 65 KSWRDKKIDTPVLIITARD--AIANRVAGLNAGADDYLVKPFALDEVIARLQALMRR--- 119 Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S R G + + + QG+ L +E ILE +M K + + + Sbjct: 120 SQGRIYPEIRFGELVYYPHSQQVTYQGQSIDLTTKEVAILEQMMTQPQKIHNRASLEDKL 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 YG + + +E N +E HI LRKKL N D + +KR +GY ++ Sbjct: 180 YG-WQQDIESNAIEVHIHHLRKKLGN----DFILTKRGIGYYLN 218 >gi|291515446|emb|CBK64656.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Alistipes shahii WAL 8301] Length = 225 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 4/151 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G ++LE + R S +I IS SL ++ + G DD ++KP H E+ AR+ + Sbjct: 57 GSGLRLLE--ELKRRRSPAAVIIISARDSLDDKIEGLELGADDYLSKPFHLAELSARIRS 114 Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR + + + G +R++ D R EV G L R+E IL Y M+ V KT + Sbjct: 115 VLRRHQRGGYESLDAGNVRLWPDSRRVEVAGREVELLRKEYDILHYFMSRPNHTVDKTAL 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRN 203 ++G D+A + V + + LR+KL + Sbjct: 175 AEGVWGDHIDQADNFDFVYAQMKNLRRKLHD 205 >gi|223936259|ref|ZP_03628172.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223895121|gb|EEF61569.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 226 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 85/163 (52%), Gaps = 10/163 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + SQVP++ ++ + ++ F++G DD + KP E+L RV A+ RR + Sbjct: 63 LKRLRKQSSQVPVLVLTARDGMAEKIENFEAGADDYLTKPFAFAELLVRVKALLRR--GT 120 Query: 123 NNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 NR+ G + + + G+ L +E +LEYL AN G+ +++T I ++ Sbjct: 121 ANRSSVLHVGDLEIDRLTQQVRRGGKKIDLTSKEYGLLEYLAANAGRVLSRTMIVEHVW- 179 Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE+ E N+V+ ++ LR K+ + + + R +GYS+ Sbjct: 180 --DESFEGLTNIVDVYVRHLRSKVDSGYPCKLIRTVRGVGYSV 220 >gi|317470771|ref|ZP_07930155.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901760|gb|EFV23690.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 227 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 83/159 (52%), Gaps = 1/159 (0%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP++ ++ L+ L G D+ + KP H + AR+ + RR + Sbjct: 62 EICRSIRKISTVPVLVLTSRDQLKDELHALKLGADEYLTKPCHKDRLTARILNLLRRYED 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + AE +R+ + G+ LP + +I+E L+ + G+ V K+ + ++G Sbjct: 122 RDRFAEIQGVRLDRQTFTVYMNGQSAVLPENQGKIMELLLLHAGETVTKSMLSERLWG-T 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++EN ++ ++++++K +R ++++R +GY + Sbjct: 181 TEYIDENALQVNMTRIKKTIRKLHIPYRIETRRGIGYCL 219 >gi|241888630|ref|ZP_04775937.1| response regulator ArlR [Gemella haemolysans ATCC 10379] gi|241864653|gb|EER69028.1| response regulator ArlR [Gemella haemolysans ATCC 10379] Length = 223 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 2/157 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 + R+ + + P+I ++ +L+ + DSG DD + KP E+ AR+ + RR + Sbjct: 63 IKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNYGL 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + N + I + + GE L +E +LEYLM N+ +++ QI + ++ + Sbjct: 123 ATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D N+V+ I +RKKL N + +KR LGY Sbjct: 182 DYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGY 218 >gi|229815480|ref|ZP_04445812.1| hypothetical protein COLINT_02528 [Collinsella intestinalis DSM 13280] gi|229809013|gb|EEP44783.1| hypothetical protein COLINT_02528 [Collinsella intestinalis DSM 13280] Length = 229 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 14/226 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNS----LEFEEWLQSSAREDVSAIEAFLIGKG 57 +L++D L+ D L G S++ ++ +E S+ + ++ L +G Sbjct: 5 ILLVEDDPLIVDALTELLTSSGYSVDTADTQTRAIELATGAGSAGTYQLVLLDVTL-REG 63 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 + P+I ++ T+ G DD V KP RE+LAR+AA R Sbjct: 64 NGFAVCAAVKETSPSTPVIFLTASDDEFNTVTGLTMGADDYVAKPFRPRELLARIAATIR 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R + S G IR+ +D E +G L E R+L N GK V++ I A+ Sbjct: 124 RSQPSRRIVSLGDIRIDTDRAYVERKGVELTLSALEYRLLLLFATNPGKLVSRDMIRDAL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 + +EEN + +I K+LR+K+ DP + + R LGY Sbjct: 184 WDSAGTYIEENTLSVYI----KRLRDKIEDDPSRPELIQTVRGLGY 225 >gi|329726494|gb|EGG62957.1| heme response regulator HssR [Staphylococcus epidermidis VCU144] Length = 224 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 94/197 (47%), Gaps = 8/197 (4%) Query: 28 GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTT 87 G SL+F E + D++ ++ + G EL + ++ +P+I ++ +L Sbjct: 34 GEASLDFLE----NKNVDIAIVDIMM--SGMDGFELCQTLKDDYHIPVIMLTARDALSDK 87 Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEV 146 F SG DD V KP +E+L R+ A+ RR ++ ++N + G + + + V + Sbjct: 88 ERAFLSGTDDYVTKPFEVKELLFRIKAVLRRYQINADNELQLGNLILNQSYMEITVGSKT 147 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 LP +E ++L L +N + I I+G FD ++ V+ HI +LR++L Sbjct: 148 MNLPNKEFQLLFLLASNPKHIFTRDYIIEKIWG-FDYEGDDRTVDVHIKRLRQRLSKLKS 206 Query: 207 FDPVDSKRFLGYSIDWN 223 + + R GY +D N Sbjct: 207 SISIQTVRGQGYRVDQN 223 >gi|299133545|ref|ZP_07026739.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298591381|gb|EFI51582.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 229 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 8/130 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 FD+G DD V KP H E+LAR+ A+ RR + + GP+ + + V G + Sbjct: 96 FDAGADDYVAKPFHLEEVLARIRALLRRSTGHAQSELTCGPVVLDTRTGRVTVDGNPIKM 155 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V++T++ +Y FD + N +E + ++RK KL D Sbjct: 156 TSHEYRLLAYLMHHAGRVVSRTELVEHLYDQDFDR--DSNTIEVFVGRIRK----KLDVD 209 Query: 209 PVDSKRFLGY 218 + + R LGY Sbjct: 210 IIQTVRGLGY 219 >gi|187924179|ref|YP_001895821.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|187715373|gb|ACD16597.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 219 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 6/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L R+ + VP++ ++ ++ + ++G DD + KP E++AR A+ RR + Sbjct: 63 LKRLRDSGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQGR 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + + V + EV PL RE IL L+ N+G +++++ ++YG + Sbjct: 123 SVEQIRYQDLTVNPAAQTVEVGTTRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG-W 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E +E N +E H+S LRKKL KL + + R +GY ++ Sbjct: 182 QEEIESNAIEVHVSNLRKKLGAKL----IKTVRNIGYVVE 217 >gi|255314146|ref|ZP_05355729.1| two-component response regulator [Clostridium difficile QCD-76w55] Length = 234 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 22/195 (11%) Query: 40 SSAREDVSAIEAFLI--------GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFF 91 SS +E +S+ E +I G G EL + IR SQVP+I ++ + Sbjct: 35 SSGKEMISSNEYSMILLDVTLPDGTG---YELCKYIRGFSQVPIIFLTACDEEVNIVMGL 91 Query: 92 DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP--- 148 D G DD + KP RE+++R+ A+ RR N E I F D ++ V+ Sbjct: 92 DIGGDDYITKPFRIRELISRIKAVLRR--KGNTSEENKKILKFGDLSIYTLEARVYKNDK 149 Query: 149 ---LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 L E ++L L+ N+ +++TQI ++ + + V +N + +I +LR+K+ + L Sbjct: 150 EIFLTSVEYKLLLILIQNKNTVLSRTQILEKLWDVTYDFVNDNTLTVYIKRLREKIGDDL 209 Query: 206 GFDP--VDSKRFLGY 218 +P +++ R +GY Sbjct: 210 C-EPIYIETVRGIGY 223 >gi|219847488|ref|YP_002461921.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541747|gb|ACL23485.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 226 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 11/137 (8%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPI----RVFSDGRDPEVQG 144 F+SG DD + KP E+LARV A+ RR + N+ G I R ++ R E + Sbjct: 91 FESGADDYLVKPFAFEELLARVRALGRRFNPNLGNDELRIGTIVLDLRSYT-ARRGERRL 149 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 ++ P E R+LEYLM N G+ + + QI ++ F+ V+ +V+ ++S LR+KL Sbjct: 150 DLTPT---EWRLLEYLMRNAGQTLTRQQILDYVWS-FEHDVQPQMVDVYVSYLRRKLNAP 205 Query: 205 LGFDPVDSKRFLGYSID 221 DP+ + R +GY ++ Sbjct: 206 GEADPIVTVRGIGYRLE 222 >gi|110801456|ref|YP_699593.1| two-component response regulator [Clostridium perfringens SM101] gi|110681957|gb|ABG85327.1| two-component response regulator [Clostridium perfringens SM101] Length = 233 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 7/146 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ ++IRA S VP+I I+ + L+ FD G DD V KP ++++AR+ AI RR Sbjct: 64 EVCKVIRAKSCVPIIMITAKTEEEDLLEGFDIGADDYVTKPFSVKQLIARIKAIIRRSTP 123 Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N G +++ D R+ V+ E+ L E IL L + K + +I Sbjct: 124 CPNEGSDILVFNNGELKINVDTREVWVRDELITLTSTEFNILLCLSSYPKKIFTRDEIIE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 + G ++ + V++SHI LR K+ Sbjct: 184 LVLGDKSDSF-DRVIDSHIKNLRGKI 208 >gi|78043342|ref|YP_361360.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77995457|gb|ABB14356.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 236 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 9/147 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR SQ+P+I ++ L F+ GVDD V KP RE+ AR+ I +RL+ Sbjct: 62 IEVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLE 121 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 E G + ++ R+ ++G+ L E ++LE + N GK ++ ++ Sbjct: 122 AKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLEY 181 Query: 177 IYGLFDEAVE--ENVVESHISKLRKKL 201 G EA E E +++HIS LRKK+ Sbjct: 182 AIG---EAYEGYERTIDTHISNLRKKI 205 >gi|23501491|ref|NP_697618.1| DNA-binding response regulator [Brucella suis 1330] gi|161618578|ref|YP_001592465.1| two component transcriptional regulator [Brucella canis ATCC 23365] gi|254703943|ref|ZP_05165771.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|260566808|ref|ZP_05837278.1| transcriptional regulatory protein PHOP [Brucella suis bv. 4 str. 40] gi|261754595|ref|ZP_05998304.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|23347396|gb|AAN29533.1| DNA-binding response regulator [Brucella suis 1330] gi|161335389|gb|ABX61694.1| two component transcriptional regulator, winged helix family [Brucella canis ATCC 23365] gi|260156326|gb|EEW91406.1| transcriptional regulatory protein PHOP [Brucella suis bv. 4 str. 40] gi|261744348|gb|EEY32274.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] Length = 229 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 8/155 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 R+ +P++ ++ + D+G DD V KP H E+LAR+ A+ RR +++ Sbjct: 68 RSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAGHASSEF 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 GP+ + + + G L E R+L Y+M + + V++T++ +Y FD Sbjct: 128 VCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYDQDFDR-- 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E + +LRK K+G D +++ R +GY + Sbjct: 186 DSNTIEVFVGRLRK----KMGVDLIETVRGMGYRM 216 >gi|309800065|ref|ZP_07694260.1| transcriptional regulatory protein CiaR [Streptococcus infantis SK1302] gi|308116316|gb|EFO53797.1| transcriptional regulatory protein CiaR [Streptococcus infantis SK1302] Length = 223 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K + N G + Sbjct: 73 TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLSYGDL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V + V V L +E +L Y + N+ + KTQIF ++G FD +VVE Sbjct: 133 TVNLSTNEVRVNDTVVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + + + R +GY Sbjct: 192 VYVSKVRKKLKGSVFAENLQTLRSVGY 218 >gi|298291170|ref|YP_003693109.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296927681|gb|ADH88490.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 219 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 11/160 (6%) Query: 65 RIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +RA V P+I ++ + ++ +G DD + KP E+ AR+ ++ RR + Sbjct: 64 RALRAAGNVTPVIILTALDQVSDRIEGLTAGADDYLVKPFDLDELSARIGSVARRYSGNP 123 Query: 124 N---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N R + I + R +G L RE +LE +A G+ ++K Q+ +Y Sbjct: 124 NPIIRHHSLDIDIAR--RSVRREGRPVQLTAREWALLEAFLARPGQVLSKAQLEEKLYD- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD VE N +E H+S+LRK KLG D ++++R LGY + Sbjct: 181 FDAEVESNTIEVHVSRLRK----KLGADLIETERGLGYRL 216 >gi|167747202|ref|ZP_02419329.1| hypothetical protein ANACAC_01916 [Anaerostipes caccae DSM 14662] gi|167654162|gb|EDR98291.1| hypothetical protein ANACAC_01916 [Anaerostipes caccae DSM 14662] Length = 226 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 18/151 (11%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 +L + IR+ S +P+I IS + Q +D G DD + KP E LAR+ + RR Sbjct: 62 QLLKEIRSCSDLPVIVISARVTTQNKIDLLRLGADDYITKPFDLDETLARIESNLRRSKL 121 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 LK +TG + + ++G L +E RILE LM K +K Sbjct: 122 QTFQKKVLKFQELTLDTGSLTAY-------LKGVELSLTAKEFRILELLMRYPDKIFSKA 174 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 +F +I+G + E+N + HIS LR KL+ Sbjct: 175 NLFQSIWG-SEYLSEDNTLNVHISHLRNKLK 204 >gi|222106554|ref|YP_002547345.1| two component response regulator [Agrobacterium vitis S4] gi|221737733|gb|ACM38629.1| two component response regulator [Agrobacterium vitis S4] Length = 218 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 15/166 (9%) Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +RA ++VP++ ++ S+++ ++ D G DD + KP E+LARV A+ RR + Sbjct: 61 EVVRTLRASGNKVPVLLLTALDSIRSRVEGLDEGADDYLVKPFDLDELLARVRALARRYE 120 Query: 121 VSNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R ET IR + DP G + +E +L+ LM G+ V K+ I Sbjct: 121 ---GRTET-LIRCGNVELDPSAMIARQNGTPLHVAGKEFHLLKLLMERAGRYVTKSDIEY 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A+Y + VE N +E I LRK KLG D + S R +GY ++ Sbjct: 177 ALYDI-SAMVESNTIEVTIYSLRK----KLGADFIKSIRGVGYMVE 217 >gi|332186744|ref|ZP_08388486.1| response regulator [Sphingomonas sp. S17] gi|332013077|gb|EGI55140.1| response regulator [Sphingomonas sp. S17] Length = 230 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 17/171 (9%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L + IRA P++ +S ++ +D +G DD + KP E+ AR+ A+ RR Sbjct: 62 LAMVSAIRAAGISTPVLILSALATVDDRVDGLKAGADDYLCKPFSFAELSARIEALVRR- 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEV---------QGEVFPLPRRERRILEYLMANRGKRVAK 170 ++RA + P R D E+ G++ P+ RE +LE+L + G+ V + Sbjct: 121 ---SDRAASEPTRTKLSVGDLEIDLLARTVTRAGKLIPVGAREFNLLEFLARHAGQVVTR 177 Query: 171 TQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 T + I+ FD NVV+ HI +LR+KL G + + R GY + Sbjct: 178 TMMLEKIWNYHFDPG--SNVVDVHIGRLRRKLEEGFGTPILHTVRGAGYRL 226 >gi|317473596|ref|ZP_07932885.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316898886|gb|EFV20911.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 226 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 18/151 (11%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 +L + IR+ S +P+I IS + Q +D G DD + KP E LAR+ + RR Sbjct: 62 QLLKEIRSCSDLPVIVISARGTTQNKIDLLRLGADDYITKPFDLDETLARIESNLRRSKL 121 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 LK +TG + + ++G L +E RILE LM K +K Sbjct: 122 QTFPKKVLKFQELTLDTGSLTAY-------LKGVELSLTAKEFRILELLMRYPDKIFSKA 174 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 +F +I+G + E+N + HIS LR KL+ Sbjct: 175 NLFQSIWG-SEYLSEDNTLNVHISHLRNKLK 204 >gi|296536465|ref|ZP_06898560.1| DNA-binding response regulator [Roseomonas cervicalis ATCC 49957] gi|296263209|gb|EFH09739.1| DNA-binding response regulator [Roseomonas cervicalis ATCC 49957] Length = 258 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 2/131 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 + P++ +S Q + F G DD + KP +E++AR+ AI RR K S GP Sbjct: 82 ETPVLILSGLSRPQAKVKAFGMGADDFITKPFDQQELMARIQAIIRRAKGFSQPTLSVGP 141 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + RD V L +E ILE L+ +G + K + +YG DE E ++ Sbjct: 142 LTLNLGSRDVRVNDREVHLTGKEYAILELLVLRKGLVLTKEVFLNHLYGGIDEP-EAKII 200 Query: 191 ESHISKLRKKL 201 + I KLRKKL Sbjct: 201 DVFICKLRKKL 211 >gi|225567971|ref|ZP_03776996.1| hypothetical protein CLOHYLEM_04044 [Clostridium hylemonae DSM 15053] gi|225163259|gb|EEG75878.1| hypothetical protein CLOHYLEM_04044 [Clostridium hylemonae DSM 15053] Length = 240 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 86/168 (51%), Gaps = 12/168 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R I+ + VP+I ++ + D G DD + KP RE+++R+ ++ RR Sbjct: 71 DICRKIKRYHNVPVIFLTACDEEANVVMGLDIGADDYIVKPFRIRELISRIRSVLRRY-- 128 Query: 122 SNNRAETGPIRVFSDG--RDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQI 173 ++R + P V+ G R +G+V+ L E ++L +L+ + G+ V + Q+ Sbjct: 129 -DSRQDIRPASVYCAGDIRVLTAEGKVYCKEEEICLSALEYKLLLFLIRHEGQIVTREQL 187 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 S IY + E V +N + +I +LR KL G + + + R LGY+I Sbjct: 188 LSHIYDIAGEYVNDNTLTVYIKRLRDKLETDTEGPEIIRTVRGLGYTI 235 >gi|150018151|ref|YP_001310405.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904616|gb|ABR35449.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 220 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 3/159 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L + IR+ P+I ++ Q + G DD ++KP E+ ARVAA RR Sbjct: 60 FSLCKEIRSLVDCPIIFLTAKTMEQDIVMGLSIGGDDYISKPFSIGELRARVAAHLRREH 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N I+ ++ E+ P + E I EYL N G+ +K +I+ +++G Sbjct: 120 REKQNAFSISDIKFNITAKEAYYNEELVPFTKSEYNICEYLALNHGQVFSKERIYESVFG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD + + HI +R K + K+G +P+++ +GY Sbjct: 180 -FDGNSDTTAIVEHIKNIRNKFK-KVGINPIETVWGIGY 216 >gi|331092175|ref|ZP_08341005.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401947|gb|EGG81521.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium 2_1_46FAA] Length = 225 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R SQVP+I ++ + L FD GVD+ + KP + ++ARV AI RR V Sbjct: 65 QVCREVRQVSQVPIIMLTARADEKDELQGFDLGVDEYIAKPFSPKILVARVEAILRRTNV 124 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + G I + + + L +E +L Y + N+G +++ +I + ++ Sbjct: 125 LFSEESIDAGGIVIDKTAHLVTIDNQPIELSYKEFELLSYFVENQGIALSREKILNNVWN 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR KL +K Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGDK 208 >gi|322388071|ref|ZP_08061677.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321141092|gb|EFX36591.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 223 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K + N G + Sbjct: 73 TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGDL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V + +VQ L +E +L Y + N+ + KTQIF ++G FD +VVE Sbjct: 133 TVNLSTNEVKVQDASVELLGKEFELLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + + R +GY Sbjct: 192 VYVSKVRKKLKGSAFAENLQTLRSVGY 218 >gi|255658536|ref|ZP_05403945.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM 20544] gi|260849340|gb|EEX69347.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM 20544] Length = 230 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 84/166 (50%), Gaps = 7/166 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + + +R S +P+I ++ ++ + D G DD + KP E++AR+ R+ Sbjct: 64 MTICKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHV 123 Query: 121 VSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N R + + ++ + EV GE L ++E +LEY+M N+ + + QI Sbjct: 124 PDNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D + + NVV+ +I LR KL ++ + + R +GY++ Sbjct: 184 EKVWG-YDYSGDTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGYAV 228 >gi|188587493|ref|YP_001919038.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352180|gb|ACB86450.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 234 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 29/223 (13%) Query: 10 LVKDGY---IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66 LVK+GY +A G+DG LE F S + ++ L GK + + Sbjct: 22 LVKEGYETEVAYNGEDG--LEKFASFS----------PHIIVLDLMLPGKDG--FSVCKE 67 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR+ S VP++ ++ S + + G DD V KP +RE+LAR+ A+ RR+ +S + Sbjct: 68 IRSQSSVPILVLTAKDSEVDKVLGLELGADDYVTKPFGNRELLARIKALLRRVNLSGQDS 127 Query: 127 ETGP----IRVFSDG----RDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + I ++D + EV QG+ L RE ++ YL+ +G+ +++ ++ Sbjct: 128 SSSEKDEDILKYNDVEINLKTAEVKKQGQAIDLTYREFQLFVYLVKRQGEVISRERMIEE 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 ++G +D E+ V+ I +LR+KL + G + +KR +GY Sbjct: 188 VWG-YDFIGEDRTVDVTIRRLREKLEDDPGSPSYIMTKRGMGY 229 >gi|163867915|ref|YP_001609119.1| two-component system regulatory protein [Bartonella tribocorum CIP 105476] gi|161017566|emb|CAK01124.1| two-component system regulatory protein [Bartonella tribocorum CIP 105476] Length = 222 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 22/139 (15%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEV 142 D+G DD V KP H E++AR+ A+ RR L N +T RVF D Sbjct: 91 IDAGADDYVVKPFHLEEVMARLRALIRRTTGHATSALCCGNVLLDTKTSRVFVD------ 144 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201 G++ L E R+L YLM + + +++T++ +Y FD+ + N VE + +LRK Sbjct: 145 -GQLIKLTSYEFRLLSYLMHHCDRVISRTELTEHLYDQDFDK--DSNTVEVFVGRLRK-- 199 Query: 202 RNKLGFDPVDSKRFLGYSI 220 KLG D +++ R +GY + Sbjct: 200 --KLGVDLIETIRGMGYRV 216 >gi|153003289|ref|YP_001377614.1| two component transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152026862|gb|ABS24630.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. Fw109-5] Length = 231 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 70/134 (52%), Gaps = 7/134 (5%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEV 146 F+ G DD V KP RE++ R+ A+ RR + GPIRV D V GE Sbjct: 94 FEVGADDYVTKPFSVRELVLRLKALARRTGAGRPAERPPEQVGPIRVDVDAHRAFVDGEE 153 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L E R+L LMA G+ ++ Q+ ++ + E VE V++H+ +LR+KL + G Sbjct: 154 VQLTPLEFRLLTMLMARLGRVQSREQLLEDVWEMSSE-VETRTVDTHVKRLREKLGS--G 210 Query: 207 FDPVDSKRFLGYSI 220 D +++ R +GY + Sbjct: 211 RDLLETVRGIGYRL 224 >gi|317054847|ref|YP_004103314.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315447116|gb|ADU20680.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 234 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 21/199 (10%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRII 67 L KDGY + DG ++ FN+L + D+ ++ L G G +V R I Sbjct: 23 LEKDGYGVILAHDGEEAVVKFNAL----------KPDIILLDIMLPGIDGWQVC---REI 69 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R S VP+I I+ + + G DD + KP +E++AR+ A+YRR+ S+ +E Sbjct: 70 RKKSNVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRRVGQSSAESE 129 Query: 128 TGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ V + V G+V P +E +L +L +N + + Q+ ++G F+ Sbjct: 130 IKEVKYDKLSVNMTRYELRVNGQVMDTPPKELELLFHLASNPNRVYTRDQLLDEVWG-FE 188 Query: 183 EAVEENVVESHISKLRKKL 201 + ++ H+ +LR+KL Sbjct: 189 YYGDSRTIDVHVKRLREKL 207 >gi|254975018|ref|ZP_05271490.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255092407|ref|ZP_05321885.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255516824|ref|ZP_05384500.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255649926|ref|ZP_05396828.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260683080|ref|YP_003214365.1| two-component response regulator [Clostridium difficile CD196] gi|260686678|ref|YP_003217811.1| two-component response regulator [Clostridium difficile R20291] gi|306520011|ref|ZP_07406358.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|260209243|emb|CBA62540.1| two-component response regulator [Clostridium difficile CD196] gi|260212694|emb|CBE03775.1| two-component response regulator [Clostridium difficile R20291] Length = 241 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 22/195 (11%) Query: 40 SSAREDVSAIEAFLI--------GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFF 91 SS +E +S+ E +I G G EL + IR SQVP+I ++ + Sbjct: 42 SSGKEMISSNEYSMILLDVTLPDGTG---YELCKYIRGFSQVPIIFLTACDEEVNIVMGL 98 Query: 92 DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP--- 148 D G DD + KP RE+++R+ A+ RR N E I F D ++ V+ Sbjct: 99 DIGGDDYITKPFRIRELISRIKAVLRR--KGNTSEENKKILKFGDLSIYTLEARVYKNDK 156 Query: 149 ---LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 L E ++L L+ N+ +++TQI ++ + + V +N + +I +LR+K+ + L Sbjct: 157 EIFLTSVEYKLLLILIQNKNTVLSRTQILEKLWDVTYDFVNDNTLTVYIKRLREKIGDDL 216 Query: 206 GFDP--VDSKRFLGY 218 +P +++ R +GY Sbjct: 217 C-EPIYIETVRGIGY 230 >gi|303247363|ref|ZP_07333636.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] gi|302491277|gb|EFL51166.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] Length = 225 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 95/188 (50%), Gaps = 8/188 (4%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGV 95 +L + DV ++ L G L + + IR A ++ P++ ++ S++ ++ ++G Sbjct: 38 FLAAEGPYDVMIVDRML--PGLDGLAIVKTIRGAGTKTPILFLTTRSSIEDRVEGLEAGG 95 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153 DD + KP E+LARV A+ RR +++ + + + R G L E Sbjct: 96 DDYLVKPFAFSELLARVQALARRPPLADVTTQLRIADLELDLLTRTASRAGHSLDLKPLE 155 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 ++LEYL+ N G+ V +T + ++ FD + NVVE++IS+LR K+ G D + + Sbjct: 156 FKLLEYLVRNAGRIVTRTMLLEKVWDFHFDP--QTNVVETNISRLRAKVDRGFGCDLIHT 213 Query: 213 KRFLGYSI 220 R GY + Sbjct: 214 VRGAGYML 221 >gi|146281292|ref|YP_001171445.1| DNA-binding response regulator [Pseudomonas stutzeri A1501] gi|145569497|gb|ABP78603.1| DNA-binding response regulator [Pseudomonas stutzeri A1501] Length = 234 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 65/220 (29%), Positives = 103/220 (46%), Gaps = 28/220 (12%) Query: 9 ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 AL +GY + DG S L N FE + + +E L R+ Sbjct: 34 ALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGLEL-----------LKRLR 82 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 A + VP++ ++ + + D+G DD + KP E+ AR+ A+ RR S NR E Sbjct: 83 AAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRR---SFNRPE 139 Query: 128 TGPIR----VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 P+ + D + +V QG LPR+E +L L+A G+ + + ++ +YG + Sbjct: 140 --PVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG-W 196 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE VE N +E HI LRKK +L + + R +GY +D Sbjct: 197 DEDVESNALEVHIHHLRKKFFPEL----IRTVRGVGYLVD 232 >gi|238923834|ref|YP_002937350.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656] gi|238875509|gb|ACR75216.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656] Length = 226 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 4/147 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IR S+VP+I ++ + L+ FD G D+ ++KP + ++ARV A+ RR Sbjct: 64 FEVCREIRQTSKVPIIMLTAKGDERDELNGFDIGADEYISKPFSPKILVARVNALLRRAN 123 Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 A E G I + + G L +E +L+Y M+N+G + + +I ++ Sbjct: 124 KLGKEAVISEAGGIVMDKTAHTVAIDGRNIELSVKEFELLDYFMSNQGIALTRERILDSV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 + +D + +++H+ KLR K+ K Sbjct: 184 WS-YDYFGDARTIDTHVKKLRSKMGAK 209 >gi|222099244|ref|YP_002533812.1| Response regulator [Thermotoga neapolitana DSM 4359] gi|221571634|gb|ACM22446.1| Response regulator [Thermotoga neapolitana DSM 4359] Length = 233 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 2/150 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGP 130 P++ ++ ++ + + G DD + KP RE++ARV A+ RR + N + G Sbjct: 82 NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRRKAENKNVKLVCGD 141 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + R G+ L ++E +ILEYLM N+ + V K ++ ++ FD+ V + + Sbjct: 142 LILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLWS-FDDTVFSDTL 200 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 SHI LRKK+ + + R +GY + Sbjct: 201 RSHIKNLRKKIDRGFKKKIIHTVRGIGYVV 230 >gi|91775069|ref|YP_544825.1| two component transcriptional regulator [Methylobacillus flagellatus KT] gi|91709056|gb|ABE48984.1| two component transcriptional regulator, winged helix family [Methylobacillus flagellatus KT] Length = 233 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 85/166 (51%), Gaps = 12/166 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+IRA SQ+P+I ++ + + G DD ++KP + RE++AR+ AI RR+ V + Sbjct: 65 RLIRASSQIPVIMLTAKGDEIDRIVGLELGADDYLSKPFNPRELVARLRAIQRRVVVRDE 124 Query: 125 RAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G I ++ R E +GE + E +LE L + G V+K ++F Sbjct: 125 ALQNHHNKPSITRVGKIAIYPSERIIEWKGEPLDITTSEYALLEVLARHAGHVVSKAELF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219 + G E+ + V+ H+S LR+KL + G P+ + R +GY Sbjct: 185 TQALGRA-ESRYDRSVDVHVSNLRQKLGLLEDGRSPIQTVRGVGYQ 229 >gi|38233005|ref|NP_938772.1| putative two component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199264|emb|CAE48895.1| Putative two component system response regulator [Corynebacterium diphtheriae] Length = 226 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 91/182 (50%), Gaps = 8/182 (4%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF+ + + + D +AI+ L+ G ++ + +RA S VP+I ++ S Sbjct: 24 EGFDVVIAGDGPSALVEFDRNAIDIVLLDLMLPGMSGTDVCKRLRAVSSVPVIMVTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSDGRD 139 + + G DD V KP RE++AR+ A+ RR ++ S+ +G I + + Sbjct: 84 EIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGGETIEESDEILGSGRIHMDVERHT 143 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 V GE +P +E +LEYLM N G+ + + Q+ ++G D + ++ HI +LR Sbjct: 144 VTVDGEEISMPLKEFDLLEYLMRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHIKRLRS 202 Query: 200 KL 201 K+ Sbjct: 203 KI 204 >gi|148652503|ref|YP_001279596.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148571587|gb|ABQ93646.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 224 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 105/224 (46%), Gaps = 13/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + DG + G+ ++ F+ + E D ++ + KG+ + Sbjct: 4 ILLIEDDSTIADGIVLGLKSHGMMVDWFSDAKQGEIALQDGMFDAVLLD-LTLPKGDGMT 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L H P++ I+ ++ + ++G DD + KP E++AR+ A+ RR Sbjct: 63 VLKNWRAKHIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALMRR--- 119 Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S R + G + + QG++ L +E ILE ++ + + ++ + + Sbjct: 120 SQGRCQPEVRYGEVAYQPQNQQVSYQGKMVELTIKEVAILEQMLTHPKQIHSRASLEDKL 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 YG + + +E N +E HI LRKKL N D + +KR +GY ++ Sbjct: 180 YG-WQQDIESNAIEVHIHHLRKKLGN----DFILTKRGIGYYLN 218 >gi|262282356|ref|ZP_06060124.1| transcriptional regulatory protein CiaR [Streptococcus sp. 2_1_36FAA] gi|262261647|gb|EEY80345.1| transcriptional regulatory protein CiaR [Streptococcus sp. 2_1_36FAA] Length = 224 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K + N G + Sbjct: 73 TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLSYGDV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V V G+ L +E +L Y + N+ + KTQIF ++G FD +VVE Sbjct: 133 TVNLSTNTTLVNGKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + + R +GY Sbjct: 192 VYVSKIRKKLKGTTFANNMQTLRSVGY 218 >gi|163791368|ref|ZP_02185779.1| hypothetical protein CAT7_10460 [Carnobacterium sp. AT7] gi|159873338|gb|EDP67431.1| hypothetical protein CAT7_10460 [Carnobacterium sp. AT7] Length = 222 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 86/172 (50%), Gaps = 16/172 (9%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VLE R +Q P++ ++ +++ +D D G DD + KP E+LAR+ A+ Sbjct: 59 GMEVLEKLR--SEGNQTPILLLTAKSAIENRIDGLDLGADDYLTKPFAMGELLARIRAMT 116 Query: 117 RR---LKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 RR L+ +N E I S+G+D L +E +IL+ LM N + + Sbjct: 117 RRKTVLQANNLTFEDLELNKDIMRISNGQDE------IKLSNKECQILQLLMENPKQIFS 170 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 Q+ I+G +D +E N + H+S LRKKL + + R +GYS++ Sbjct: 171 ADQMIERIWG-WDSDIEMNSIWVHLSNLRKKLAELDVHVKIVATRGVGYSLE 221 >gi|149378109|ref|ZP_01895829.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Marinobacter algicola DG893] gi|149357594|gb|EDM46096.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Marinobacter algicola DG893] Length = 226 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 95/194 (48%), Gaps = 13/194 (6%) Query: 35 EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDS 93 +E + +A ED + + G L + + +RA +QVP++ +S + ++ Sbjct: 34 KEGMMMAASEDYDIMIVDRMLPGMDGLSIIKTVRATGNQVPVLILSALGDVDDRVEGLRG 93 Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVF 147 G DD + KP E+LAR+ ++ RR + S AET + +D R + G Sbjct: 94 GGDDYLTKPFSFTELLARIESLVRRNRQS---AETETVLRVADLEMDLLARTVKRAGHNI 150 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG 206 + RE R+LEYLM N G+ V +T + ++ FD + NV++ HIS+LR K+ + Sbjct: 151 DVQPREFRLLEYLMRNAGQVVTRTMLLEKVWDYHFDP--QTNVIDVHISRLRAKIDKEFE 208 Query: 207 FDPVDSKRFLGYSI 220 + + R GY + Sbjct: 209 TPLLQTIRGAGYML 222 >gi|319408243|emb|CBI81896.1| two-component system regulatory protein [Bartonella schoenbuchensis R1] Length = 222 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP H E++AR+ A+ RR + N G + + + V G++ L Sbjct: 91 IDAGADDYVVKPFHIEEVIARLRALIRRAAGHATNSLSCGSVLLDTKTSRVFVDGQLIKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + + V++T++ +Y FD+ + N +E + +LRK KLG D Sbjct: 151 TSHEFRLLSYLMHHCDQIVSRTELIEHLYDQDFDK--DSNTIEVFVGRLRK----KLGVD 204 Query: 209 PVDSKRFLGYSI 220 +++ R +GY + Sbjct: 205 LIETVRGMGYRV 216 >gi|312197895|ref|YP_004017956.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229231|gb|ADP82086.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 248 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 7/141 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ S VP++ +S +L L +G DD + KP E++AR+ I RR V Sbjct: 90 RLQACGSDVPVLFLSARGNLDDRLRGLSAGADDYLAKPFSVEELVARIRVILRRRGVLTE 149 Query: 125 RA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI--YGL 180 + G +R+ D R V G L E ++L +L+ N G+ V++ QI + YG Sbjct: 150 ASALTCGALRLDEDARRVTVGGRTIALSPTEYKLLRFLLRNAGRAVSRAQILDHVWDYG- 208 Query: 181 FDEAVEENVVESHISKLRKKL 201 FD E VVE+ IS LRKK+ Sbjct: 209 FDG--ESTVVETFISSLRKKV 227 >gi|154249470|ref|YP_001410295.1| two component transcriptional regulator [Fervidobacterium nodosum Rt17-B1] gi|154153406|gb|ABS60638.1| two component transcriptional regulator, winged helix family [Fervidobacterium nodosum Rt17-B1] Length = 229 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 75/131 (57%), Gaps = 6/131 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149 F++G DD + KP + E+LAR+ A+ RR +S ++ + G + ++ + R G+ L Sbjct: 95 FEAGADDYLTKPFDNEELLARIKALLRRKNISISQPIKFGSLEIYENQRTVIYNGKNVDL 154 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 + E +L YL N+ + V+K +I A++G+ D +N VE +++ +RKKL +L Sbjct: 155 SKTEFDLLLYLAKNKDRVVSKEEILDAVWGI-DYYGSDNTVEVYVNYIRKKLSPEL---- 209 Query: 210 VDSKRFLGYSI 220 + + R +GY + Sbjct: 210 IKTIRGVGYKL 220 >gi|21241099|ref|NP_640681.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106398|gb|AAM35217.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 227 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 1/158 (0%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R +R S VP+I ++ L + G DD + KP RE++ARV A+ RR + Sbjct: 67 LDICRDLRNESAVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHR 126 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + A +++ D V G L + E R+L L A G+ ++ Q+ +Y Sbjct: 127 HDPHGAPAPGLQIDEDACRASVDGRALDLTQVEFRLLRTLAAAPGRVYSREQLMGRLYAD 186 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V + V+SH+ LR+KL + G D V S GY Sbjct: 187 H-RIVTDRTVDSHVKNLRRKLADAGGEDWVRSVYGAGY 223 >gi|27380988|ref|NP_772517.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27354154|dbj|BAC51142.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 226 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 6/158 (3%) Query: 66 IIRAHSQVP----LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 ++ A S+ P +I ++ + + +D + G DD + KP +E++ARV A+ RR + Sbjct: 62 VVTALSRSPERPAIIMLTSKDAKEDVVDGLNGGADDYLGKPFEPQELIARVRAVLRRPRL 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ G + + + V L RRE IL L+ R + + + + IYG Sbjct: 122 LAPAVLSLGNVELHLGSNEAVVADTKILLRRREALILGALLMRRDRVITRAALIEEIYG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD+ +E N +E+ +S+LRKKL G + S R +GY Sbjct: 181 FDDEIESNTLEAQVSRLRKKLAALGGDVEIRSMRGIGY 218 >gi|331266799|ref|YP_004326429.1| DNA-binding response regulator [Streptococcus oralis Uo5] gi|326683471|emb|CBZ01089.1| DNA-binding response regulator [Streptococcus oralis Uo5] Length = 218 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 51/219 (23%), Positives = 105/219 (47%), Gaps = 6/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++G D G E + + +E L+ + +V+ + + LE Sbjct: 4 LIVEDEEMIREGISDYLTDCG--YETIEAADGQEALEKFSSYEVALVLLDIQMPKFNGLE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR SQVP++ ++ + + + F S D + KP + RV AI++R + Sbjct: 62 VLAEIRKSSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYDT 121 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +V + + G+ + +E IL+YL+ N G+ + ++QI A++ D Sbjct: 122 GRVFSYKDTKVDFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKATD 181 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E + V++ +I K+LR KL D + + R +GY ++ Sbjct: 182 EVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216 >gi|260889615|ref|ZP_05900878.1| DNA-binding heavy metal response regulator CopR [Leptotrichia hofstadii F0254] gi|260861026|gb|EEX75526.1| DNA-binding heavy metal response regulator CopR [Leptotrichia hofstadii F0254] Length = 235 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 19/167 (11%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 L RI Q P++ ++ S+Q + D G DD + KP E+LAR+ I R+ Sbjct: 70 LKRIRNKGIQTPVLFLTARESVQDRVKGLDYGADDYLVKPFDFEELLARIRVILRKNSIK 129 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 K++N + VF D + L +E ILEY++ N+ + ++K Sbjct: 130 SDSVGNIFKIANLTVDCNEHTVFRDEKR-------IKLSPKEFSILEYMIRNKKRVISKD 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +I IY FD + NV+E HI LRKK+ + + R +GY Sbjct: 183 KIEQHIYD-FDSEINSNVIEVHIRLLRKKIDTDFTPKLIHTIRGVGY 228 >gi|83950531|ref|ZP_00959264.1| two-component response regulator [Roseovarius nubinhibens ISM] gi|83838430|gb|EAP77726.1| two-component response regulator [Roseovarius nubinhibens ISM] Length = 224 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 96/191 (50%), Gaps = 9/191 (4%) Query: 35 EEWLQSSARE-DVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFD 92 E LQ+S E DV I+ L G + L + +R A + P++ ++ + ++ + Sbjct: 36 EALLQASGTEYDVLIIDRML--PGLDGMALVKTLRGAKNHTPVLFLTSLGGVDDRIEGLN 93 Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLP 150 +G DD + KP E+ ARVAA+ RR + + G + + R G+V L Sbjct: 94 AGGDDYLVKPFAFGELSARVAALARRPRATQEETILRAGDLEMDLMHRKVTRAGQVIDLL 153 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209 RE +LE L+ +G+ +T + A++ + FD + NVVE+HIS+LR K+ + Sbjct: 154 PREFALLEQLLRRKGRVQTRTMLLEAVWDISFDP--QTNVVETHISRLRAKVDKPFETEL 211 Query: 210 VDSKRFLGYSI 220 +++ R GY I Sbjct: 212 IETVRGSGYRI 222 >gi|226943549|ref|YP_002798622.1| Response regulator [Azotobacter vinelandii DJ] gi|226718476|gb|ACO77647.1| Response regulator [Azotobacter vinelandii DJ] Length = 226 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 89/175 (50%), Gaps = 13/175 (7%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L++ R +R S+VP+I ++ L ++G DD + KP RE++ARV Sbjct: 55 LMLPGRDGLDICRELRGFSRVPVIMVTARVEEIDRLLGLETGADDYLCKPFSPRELVARV 114 Query: 113 AAIYRR----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR + + R + +G + ++ P+ E R+L+ L+A G+ + Sbjct: 115 KAVLRRSGKPPPLPGLLTDPASYRAYCNG----IPLDLTPV---EFRLLDALLARPGQAL 167 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + Q+ + +Y V + V+SH+ LR+KL+ G DP+ S +GY ++W Sbjct: 168 TREQLMNHLYE-DHRIVTDRTVDSHVKNLRRKLQQAAPGEDPIRSIYGVGYCLEW 221 >gi|322805361|emb|CBZ02925.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 228 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 99/197 (50%), Gaps = 18/197 (9%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+GY G+ S+E F S++ + + D+S GE E+ RIIR Sbjct: 21 LEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLMLPDIS---------GE---EVCRIIR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126 S V + ++ +L ++ + G D+ + KP RE+ ARV A++RRL N+ + Sbjct: 69 QSSDVHIFMLTAKRALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSTYNSTSNL 128 Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + G + + D R +V G+ + E IL L++N+G +++ Q+ + I+G+ D Sbjct: 129 IFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGIVLSREQLINKIFGI-DFN 187 Query: 185 VEENVVESHISKLRKKL 201 + ++ HI +RKK+ Sbjct: 188 GYDRTIDVHIKNIRKKI 204 >gi|257792299|ref|YP_003182905.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|317490222|ref|ZP_07948710.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325833586|ref|ZP_08166035.1| DNA-binding response regulator [Eggerthella sp. HGA1] gi|257476196|gb|ACV56516.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|316910716|gb|EFV32337.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325485510|gb|EGC87979.1| DNA-binding response regulator [Eggerthella sp. HGA1] Length = 230 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 86/170 (50%), Gaps = 7/170 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G ++L + R A +P++ ++ + T+ D+G DD + KP E+++RV A+ Sbjct: 58 GLEILHMLRENPATKHLPVMMLTAKGTEFDTVSGLDAGADDYLAKPFGMMELVSRVNALM 117 Query: 117 RRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR ++++ GPI + +V GE L +E +L L+ N+G ++++Q Sbjct: 118 RRASAPPVMADDELSCGPIELCVSAHTVQVGGEPITLTLKEFDLLHTLLQNQGHVLSRSQ 177 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDP-VDSKRFLGYSI 220 + ++G+ E V+ H+ LR+KL + G D V + R +GY I Sbjct: 178 LLEDVWGM-TYVGETRTVDVHVQTLRQKLAAAQEGADALVRTVRGVGYCI 226 >gi|157962753|ref|YP_001502787.1| two component transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157847753|gb|ABV88252.1| two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 229 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 12/153 (7%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETG 129 P++ ++ S Q ++ D+G DD + KP H E++AR+ A+ RR S +A G Sbjct: 74 PILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR---SAGKASPIVSNG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P + + + GE L E ++ EY M + G+ +KT + IY D ++ NV Sbjct: 131 PFSLNTSSLEITKSGETITLSGSEYKLFEYFMLHIGEVKSKTVLTEHIYDQ-DFDLDSNV 189 Query: 190 VESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220 +E I +LRKKL N+LG +++ R GY + Sbjct: 190 IEVFIRRLRKKLDPDNQLGL--IETLRGQGYRL 220 >gi|163943206|ref|YP_001642436.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865403|gb|ABY46461.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 221 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 7/162 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ ++IR+ S VP+I ++ Q + FD G+DD + KP ++ RV A+ RR Sbjct: 64 EVAKMIRSQSNVPVIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSND 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K +N +RV D V L +E IL+ L+ N + + + I ++G Sbjct: 124 KSLDNHFVFKELRVDVDAYKVYVNEVEISLTTKEFEILQLLLQNEKRVLPRESIVEKVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D E ++++H+ +RK KL + + + +GY ID Sbjct: 184 -YDYIGESRIIDTHMKNIRK----KLDIPYIKTIKGIGYKID 220 >gi|323701174|ref|ZP_08112849.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533776|gb|EGB23640.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 230 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 98/204 (48%), Gaps = 10/204 (4%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE---LPRIIRAHSQVPLIGISDYPS 83 EGF E E+ Q I+ L+ VL+ + +++R ++P++ ++ Sbjct: 24 EGFTVCEAEDGQQVLDIVKSQPIDLVLLDLMMPVLDGWTVCKMLRRERKIPIVMLTAKGE 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAETGP-IRVFSDGR 138 + D G DD + KP RE++ARV A+ RR + N+ + P ++ R Sbjct: 84 ENDRVLGLDLGADDYIVKPFSTRELVARVKAVLRRAEGIGEKHNSHILSYPGFKLNELTR 143 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 + E+ GEV L +E +L L N G+ ++ Q+ ++G FD + V++HI++LR Sbjct: 144 ELEMHGEVINLTTKEFELLAMLAKNPGRIFSRDQLLEMVWG-FDYCGDSRTVDTHINRLR 202 Query: 199 KKLRNKLGFDP-VDSKRFLGYSID 221 KL + D + + R +GY + Sbjct: 203 SKLERQPNQDEYIKTIRGVGYKFE 226 >gi|254784803|ref|YP_003072231.1| PhoB family transcriptional regulator [Teredinibacter turnerae T7901] gi|237686809|gb|ACR14073.1| transcriptional regulatory protein PhoP [Teredinibacter turnerae T7901] Length = 225 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 3/160 (1%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R +RA + P++ ++ Q ++ ++G DD + KP H+ E+ AR A+ RR Sbjct: 60 MEIIRRLRAAGKKYPVLILTARGHWQDKVEGLEAGADDYLVKPFHNEELRARANALIRRA 119 Query: 120 KVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + + GPI + + + V L E LEYL + GK V+KT++ +Y Sbjct: 120 AGSATPQLQFGPIAIDTAQKRVLVSNVAIELTSYEYNTLEYLALHAGKPVSKTELTEHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D + NV+E I +LRKKL P+ + R GY Sbjct: 180 HQ-DFERDSNVIEVFIGRLRKKLDPDNQLKPISTIRGQGY 218 >gi|160879763|ref|YP_001558731.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428429|gb|ABX41992.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 227 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 75/155 (48%), Gaps = 3/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNR 125 R P+I +S + + D+G DD + KP E+LAR+ A+ RR + Sbjct: 68 REKIATPVILLSAKGETEDKVRGLDTGADDYLPKPFKTEELLARLRALGRRKGEIIPEGI 127 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 G I + + D + + L +E ++LE LM +G ++K I ++G FD Sbjct: 128 LSYGDIELNPNTLDVYCGKKTYKLTLKESQLLELLMNMKGMVISKNYIIEKLWG-FDGEA 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E+N VE +IS LRKKL + + + R LGY + Sbjct: 187 EDNHVEVYISFLRKKLAALGSTNTIQTIRGLGYML 221 >gi|325840792|ref|ZP_08167156.1| sensory transduction protein RegX3 [Turicibacter sp. HGF1] gi|325490162|gb|EGC92499.1| sensory transduction protein RegX3 [Turicibacter sp. HGF1] Length = 228 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 6/202 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D LV D A + + F + E L +E + + L+ K E Sbjct: 4 LLIEDEVLVLDALKAYLEREQYRV--FVATTGNEGLTIFEKEKIDLVILDLMLPDMKGEE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + + IRA S V L ++ SL+ + + G DD + KP RE++AR+ + RR+ Sbjct: 62 ICQQIRAISDVYLFMLTAKGSLEHRILGLNLGADDYLVKPFSPRELVARIKTVVRRINGP 121 Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N N + G + + R +VQ E+ P E +L LM N+GK + + Q+ + I G Sbjct: 122 LQNINLYDDGYLLIDQSKRIVKVQEEIVPFTTTEFNLLVLLMDNKGKVLTREQLINQILG 181 Query: 180 LFDEAVEENVVESHISKLRKKL 201 FD + ++ HI +RKK+ Sbjct: 182 -FDFNGYDRTIDVHIKNIRKKI 202 >gi|325847051|ref|ZP_08169877.1| putative sensory transduction protein RegX3 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481023|gb|EGC84068.1| putative sensory transduction protein RegX3 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 219 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LE+ + IR S +P+I ++ + +SG DD + KP E+++RV A+ RR Sbjct: 59 LEILKEIREFSSIPIIMLTARDGEYDKVMGLESGADDYITKPFSILELISRVKAVLRRSE 118 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K G I + R +V GE L +E +L MAN G + + I+G Sbjct: 119 KKDREHLNYGSIEINIKKRTVKVDGEKIDLTFKEFEMLLLFMANIGNVITREDFLLKIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E V+ HI+ LR KL++ + + + R LGY + Sbjct: 179 -YDYEGETRTVDVHIASLRNKLKS--AGENIKTVRNLGYKL 216 >gi|22536876|ref|NP_687727.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|25010740|ref|NP_735135.1| DNA-binding response regulator [Streptococcus agalactiae NEM316] gi|76787341|ref|YP_329460.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|22533726|gb|AAM99599.1|AE014224_2 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|23095094|emb|CAD46329.1| Unknown [Streptococcus agalactiae NEM316] gi|76562398|gb|ABA44982.1| DNA-binding response regulator [Streptococcus agalactiae A909] Length = 234 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 9/168 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 EL R+IR SQ+P+I ++ + + + G DD + KP + E+LAR+ + RR Sbjct: 62 ELTRLIRQDSQIPIIMLAAKTTDMDRILGLNIGADDFITKPFNSLEVLARINSQLRRYYE 121 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K N + G + + + + G+ L E +IL LM++ G+ KTQ++ Sbjct: 122 FNSLAKPKNQFIKIGELELDEEHVELTKNGKHIKLTATEFKILHILMSSPGRIYTKTQLY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 I G + E +E + HIS +R K+ + + + + R +GY I+ Sbjct: 182 EKINGRYLEG-DETTIMVHISNIRDKIEDDSKYPKYIKTLRGVGYKIE 228 >gi|147668884|ref|YP_001213702.1| two component transcriptional regulator [Dehalococcoides sp. BAV1] gi|146269832|gb|ABQ16824.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. BAV1] Length = 230 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 78/146 (53%), Gaps = 7/146 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R+IRA S VP++ ++ S ++ ++G DD ++KP +E+LAR+ A+ RR ++ Sbjct: 64 ELCRLIRAESSVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMRALLRRSQM 123 Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N++A+ G + +F + G +E + +L+ NR + ++ Q+ Sbjct: 124 LNSQADIAGGLKIGDLEIFIERHLVIRNGVALDFSPKEFDLFSFLVQNRYRVFSREQLLE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 ++G +D V+ HIS LR+K+ Sbjct: 184 KVWG-YDYPGGTRTVDVHISWLRQKI 208 >gi|257126795|ref|YP_003164909.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257050734|gb|ACV39918.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 226 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 16/151 (10%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR SQVP+I ++ + + FD G DD + KP + E+LAR+ A+ RR K Sbjct: 62 MEVCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTK 121 Query: 121 VS----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 S + VF D +Q L +RE +L++L+ N+G +++ Sbjct: 122 KSVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQ-----LSKREFELLDFLVLNKGIVLSR 176 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +I ++G FD +N+++ +I LR K+ Sbjct: 177 DKILEEVWG-FDYIGNDNILDLYIKYLRDKI 206 >gi|268589246|ref|ZP_06123467.1| DNA-binding response regulator PhoP [Providencia rettgeri DSM 1131] gi|291315431|gb|EFE55884.1| DNA-binding response regulator PhoP [Providencia rettgeri DSM 1131] Length = 224 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 104/224 (46%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ D G ++ + ++ + D++ ++ L E L Sbjct: 3 ILIVEDNALLRHHLTVQLKDLGHQVDSAEDAKEADYFLHESCPDIAVVDLGL--PDEDGL 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + R H +PL+ ++ S Q + +SG DD V KP E++AR+ A+ RR Sbjct: 61 SMIKRWRGEHVNIPLLVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMRRNS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ E G + ++ V GE L E I+E L+ N GK V+K + +Y Sbjct: 121 GLASQVLELGNFVIDLSRKEFTVNGETVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E E + ++ + +LRKK++ D + + R GY D N Sbjct: 181 -DAELRESHTIDVLMGRLRKKIQQFHSDDVIVTVRGQGYRFDVN 223 >gi|160892844|ref|ZP_02073633.1| hypothetical protein CLOL250_00374 [Clostridium sp. L2-50] gi|156865403|gb|EDO58834.1| hypothetical protein CLOL250_00374 [Clostridium sp. L2-50] Length = 222 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 98/189 (51%), Gaps = 6/189 (3%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSG 94 ++L++++ + V I +I K + + + + IRA QVP++ ++ Q + D+G Sbjct: 38 DYLETASYDGV--IMDIMIPKKDG-MSVLKTIRAEGIQVPVLFLTAKSETQDIVRGLDAG 94 Query: 95 VDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRE 153 D + KP E+LAR+ + R + +SN+ G +++ ++ G L RE Sbjct: 95 ASDYMTKPFEFSELLARLRVMLRTVHISNDSILNYGSLQIDTNNHRVVRDGVTVDLTVRE 154 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 ILEYL+ N+ V + QI + I+ + D+ + NVV+ +I LR+K+ + + + Sbjct: 155 YAILEYLVRNKNIVVTREQIRANIWSI-DDDINSNVVDVYIRYLRRKIDDPFEEKLIHTI 213 Query: 214 RFLGYSIDW 222 R +GY ++ Sbjct: 214 RGVGYRLEC 222 >gi|332716740|ref|YP_004444206.1| two component response regulator [Agrobacterium sp. H13-3] gi|325063425|gb|ADY67115.1| two component response regulator [Agrobacterium sp. H13-3] Length = 217 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 6/150 (4%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP- 130 P+I ++ + + + ++G DD + KP E+ AR+ A+ RR + + P Sbjct: 72 STPVIILTAHDQVSDRIAGLNAGADDYLVKPFDLNELSARMLAVSRRYEGRSAPVIRLPG 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I + R+ V G L RE +LE L+ + G V+K+Q+ +Y F +E N V Sbjct: 132 IEINQVARNIVVDGTAQTLSAREWAVLEKLVEHPGAVVSKSQLHDTLYE-FGAEIESNTV 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E +IS+LRK K+G D V++ R +GY+I Sbjct: 191 EVYISRLRK----KIGHDRVETVRGVGYTI 216 >gi|322374704|ref|ZP_08049218.1| DNA-binding response regulator VncR [Streptococcus sp. C300] gi|321280204|gb|EFX57243.1| DNA-binding response regulator VncR [Streptococcus sp. C300] Length = 218 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 51/219 (23%), Positives = 105/219 (47%), Gaps = 6/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++G D G E + + +E L+ + +V+ + + LE Sbjct: 4 LIVEDEEMIREGISDYLTDCG--YETIEAADGQEALEKFSSYEVALVLLDIQMPKLNGLE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR SQVP++ ++ + + + F S D + KP + RV AI++R + Sbjct: 62 VLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYDT 121 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +V + + G+ + +E IL+YL+ N G+ + ++QI A++ D Sbjct: 122 GRVFSYKDTKVDFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKATD 181 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E + V++ +I K+LR KL D + + R +GY ++ Sbjct: 182 EVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216 >gi|154497232|ref|ZP_02035928.1| hypothetical protein BACCAP_01525 [Bacteroides capillosus ATCC 29799] gi|150273631|gb|EDN00759.1| hypothetical protein BACCAP_01525 [Bacteroides capillosus ATCC 29799] Length = 223 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 4/159 (2%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R IR +P++ ++ +L F G DD + KP E+L RVAA+ RR K Sbjct: 62 ELLRQIRESGMDMPVLLVTAKQTLSDKKKGFLLGADDYMVKPFEEEEMLLRVAALLRRAK 121 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R T G + D G LP++E +L L++ K + Q+ I+ Sbjct: 122 ILTERKLTVGSTELIYDSLTVISNGTAQTLPKKEFLLLYKLLSFNNKTFTRRQLMDEIWD 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L D +E+ V HI+KLR + R+ F+ V + R LGY Sbjct: 182 L-DTESDEHTVNVHINKLRDRFRDNHDFEIV-TVRGLGY 218 >gi|332527397|ref|ZP_08403453.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332111806|gb|EGJ11786.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 219 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 27/228 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL---QSSAREDVSAIEAFLI---- 54 +L++D L+ DG A G++ GF +W+ ++++RE SA+ A + Sbjct: 3 ILLVEDDPLLGDGLRA-----GLTQAGFQV----DWVRDGEAASRELRSAVHAAAVLDLG 53 Query: 55 ---GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 G +VL R RA ++P++ ++ ++ + DSG DD V KP+ E+ AR Sbjct: 54 LPRKDGLEVLAETR--RAGVRLPVLVLTARDAVSDRVIGLDSGADDYVVKPVDLDELAAR 111 Query: 112 VAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + A+ RR + + G + + R GE L +RE +L LM N G+ + + Sbjct: 112 LRALIRRAHGQTQDLLAAGEVVLDPAARTVTRGGEPVVLSQREFDLLHALMLNAGRVLTR 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 Q+ +Y + VE N VE H+ LR+ KLG + V + R +GY Sbjct: 172 EQLEQHLY-RWGREVESNAVEVHVHHLRR----KLGAELVQTVRGVGY 214 >gi|319745720|gb|EFV98017.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 224 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 109/223 (48%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++++D + + AL D G S++ F+ + E++ + + V + ++ K + Sbjct: 3 LLVVEDEKSIAEAIQALLADKGYSVDLVFDGDDGLEYILTGLYDLV--LLDIMLPKRSGL 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R+ A + P+I ++ ++ D G DD + KP E+LAR+ R+ Sbjct: 61 SVLKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N+ G IR+ +D + E + L +E ++E M N + + K Q+ S ++G Sbjct: 121 LIRTNQLRLGNIRLNTDSHELESKESSVKLSNKEFLLMEVFMRNAKQIIPKNQLISKVWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 D + E N +E IS LRKKLR K + + +K F GYS++ Sbjct: 181 PSDNS-EYNQLEVFISFLRKKLRFLKADIEIITTKGF-GYSLE 221 >gi|189463223|ref|ZP_03012008.1| hypothetical protein BACCOP_03936 [Bacteroides coprocola DSM 17136] gi|189430202|gb|EDU99186.1| hypothetical protein BACCOP_03936 [Bacteroides coprocola DSM 17136] Length = 225 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 4/167 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G +L + H+ V I +S SL+ ++ D G DD + KP H E+ AR+ + Sbjct: 57 GNGLDLLAELHALGKHTNV--IILSAKASLEDKVNGLDLGADDYLPKPFHLAELHARIKS 114 Query: 115 IYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR L+ + + G + +F D VQG+ L R+E IL Y M+ G+ V K + Sbjct: 115 LLRRKLREGERKLQVGNVELFPDDFRVMVQGKEIELNRKEYDILNYFMSRPGRLVNKNTL 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +++G D+ + + + I LRK+L++ + S GY Sbjct: 175 AESVWGDHIDQVDNFDFIYAQIKNLRKRLKDAGATPELKSVYGFGYK 221 >gi|240145147|ref|ZP_04743748.1| phosphate regulon response regulator PhoB [Roseburia intestinalis L1-82] gi|257202825|gb|EEV01110.1| phosphate regulon response regulator PhoB [Roseburia intestinalis L1-82] Length = 223 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 83/167 (49%), Gaps = 5/167 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +L R +A + VP+I ++ S + D G DD + KP E+++RV A+ Sbjct: 60 GLDILTRIRADKATADVPVIMVTAKTSELDKVKGLDLGADDYITKPFGVMELISRVKALL 119 Query: 117 RRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR N ++ I + D V G++ L +E +L+YLM N+G +++ +I Sbjct: 120 RRTSRINEDSQLIHEDILMDMDKHAVTVAGQLCELTFKEFELLKYLMLNQGIVLSRDKIM 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ E V+ HI LR+KL G + + R +GY I+ Sbjct: 180 DQVWG-FEYEGESRTVDMHIKTLRQKLGAAGG--CIKTVRNVGYMIE 223 >gi|310826081|ref|YP_003958438.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308737815|gb|ADO35475.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 227 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 5/133 (3%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--PIRVFSDGRDPEVQGEVFP 148 F +G DD + KP E+L R+ AI RR + A +RV + R V GE Sbjct: 90 FRTGADDYLVKPFDRDELLLRIEAILRRSTGHYDIAALCFKELRVETMTRTVTVAGEALD 149 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L ++ ILEYL++++ + V K QIF I+G F NVVE ++S LR+ L + G+D Sbjct: 150 LRGKQYDILEYLVSHQEQLVTKAQIFDKIWG-FTTDTSSNVVEVYVSALRRIL-SGCGYD 207 Query: 209 PV-DSKRFLGYSI 220 + R +GY + Sbjct: 208 SCLKTIRGVGYML 220 >gi|270157088|ref|ZP_06185745.1| DNA-binding response regulator PmrA [Legionella longbeachae D-4968] gi|289164500|ref|YP_003454638.1| DNA-binding response regulator in two-component regulatory system with QseC [Legionella longbeachae NSW150] gi|269989113|gb|EEZ95367.1| DNA-binding response regulator PmrA [Legionella longbeachae D-4968] gi|288857673|emb|CBJ11516.1| DNA-binding response regulator in two-component regulatory system with QseC [Legionella longbeachae NSW150] Length = 225 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 14/156 (8%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P+I ++ S++ + DSG DD + KP E+ AR+ A+ RR S RA+ ++ Sbjct: 73 TPVIILTARESVEDRVKGLDSGADDYLVKPFDLNELSARIRALVRR---SQGRAD-AVLQ 128 Query: 133 VFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 + DP V + +PRRE +L+ L+ N G+ +++ Q+ +IYG ++E V+ Sbjct: 129 YRNITLDPAAHSVFVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYG-WEEDVDS 187 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 N +E HI LRKKL + + R +GY + N Sbjct: 188 NALEVHIHNLRKKLNANF----IRTIRGVGYMAEKN 219 >gi|255523826|ref|ZP_05390791.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255512529|gb|EET88804.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 230 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 8/149 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R+ S +P+I +S + T +D G DD V KP E+LAR+ + RR K Sbjct: 63 EILRELRSFSDIPVIILSAKDMVHTKVDLLRLGADDYVTKPFDLNEVLARIESNLRRCKS 122 Query: 122 -SNNRAETGPIRVFSDGRDPE------VQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +++ E PI + D E V G L +E IL L+++ K +K +F Sbjct: 123 DTSSTIEKEPILTYKDITLNEEEKKVVVNGNTLVLTSKEYGILLLLLSHPQKVFSKANLF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 +I+ + E+N + HIS +R KL++ Sbjct: 183 ESIWK-EEYFSEDNTLNVHISNIRNKLKS 210 >gi|260905794|ref|ZP_05914116.1| two component transcriptional regulator [Brevibacterium linens BL2] Length = 227 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 17/197 (8%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY DDG+ E+ ++ A D+ ++ L G E+ R +R Sbjct: 21 LGKEGYEVTVADDGLK-------ALAEFDRNGA--DLVLLDLMLPGVSGT--EVCRELRV 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-----NN 124 S VP+I ++ S + + G DD V KP RE+LARV A+ RR S + Sbjct: 70 KSSVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARVRAVLRRNVESEGFDDES 129 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E G +R+ + V+GE +P +E +LE L+ N G+ + + Q+ I+G D Sbjct: 130 VLEAGGVRIDVERHVVSVRGEELSMPLKEFELLEILIRNSGRVMTRGQLIDRIWG-EDYV 188 Query: 185 VEENVVESHISKLRKKL 201 + ++ H+ +LR K+ Sbjct: 189 GDTKTLDVHVKRLRAKV 205 >gi|320333683|ref|YP_004170394.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754972|gb|ADV66729.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 227 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 9/157 (5%) Query: 57 GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 GE L R +R S ++P++ ++ + ++ +SG DD + KP E++ARV Sbjct: 55 GESGLSFLRRLRGDSDLRRLPVLMLTARAAEAERVEGLESGADDYLTKPFSAAELVARVR 114 Query: 114 AIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ RR + + N E GP+ + + ++G L RRE +L +L NRG+ + + Sbjct: 115 ALLRRTQTDAPNSIENGPLTIDVSAAEARLRGGRLNLTRREFDLLAFLALNRGRVYGRAE 174 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 + ++G D E V+ H+++LR LG DP Sbjct: 175 LLDRVWGA-DFLGGERTVDQHVTQLRA----HLGDDP 206 >gi|256371361|ref|YP_003109185.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] gi|256007945|gb|ACU53512.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] Length = 237 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 17/167 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + VP++ ++ +++ + G DD V KP E++ARV AI RR Sbjct: 73 LRRLREERNDVPVLLLTAKDAVEDRVQGLQLGSDDYVTKPFSLAELVARVEAILRR---- 128 Query: 123 NNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + P R+ D G L E ++L YLM N K V+K QI Sbjct: 129 SGQGTGAPTRIVVGDLVLDEDAHQVLRAGHEIELTATEFKLLRYLMLNANKVVSKAQILD 188 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 ++ +D + N+VE++IS LRKKL G+ P + + R +GYS+ Sbjct: 189 HVWQ-YDFGGDANIVETYISYLRKKLD---GYGPPMIKTVRGVGYSL 231 >gi|220933773|ref|YP_002512672.1| two component transcriptional regulator, winged helix family [Thioalkalivibrio sp. HL-EbGR7] gi|219995083|gb|ACL71685.1| two component transcriptional regulator, winged helix family [Thioalkalivibrio sp. HL-EbGR7] Length = 220 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 17/160 (10%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRA 126 RA +P++ ++ + ++ +G DD + KP H E+LARV A+ RR V + Sbjct: 68 RAGLSMPVLILTARDGWRERVEGLRAGADDYLGKPFHTEELLARVQALLRRGAPVRDTVL 127 Query: 127 ETGPIRVFSDGRDPEVQ------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 GP R+ D + Q GE L E R+L Y + + G+ ++KTQ+ +Y Sbjct: 128 HVGPWRL-----DEQRQCLLNESGEETALTATEYRLLRYFLRHPGEVLSKTQLSEHLYE- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + NV+E ++ ++LR+KLG D ++++R GY + Sbjct: 182 YESERDSNVLEVYV----RRLRDKLGRDLIETRRGQGYVL 217 >gi|167746576|ref|ZP_02418703.1| hypothetical protein ANACAC_01286 [Anaerostipes caccae DSM 14662] gi|167653536|gb|EDR97665.1| hypothetical protein ANACAC_01286 [Anaerostipes caccae DSM 14662] Length = 227 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 9/151 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G++VL R +R S +P+I IS + T +D G DD + KP E+ ARV + Sbjct: 61 GDQVL---RELRGFSDIPVIVISAKDMVGTKIDLLKLGADDYITKPFDLGEVEARVLSNL 117 Query: 117 RRLKVSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR S + +T R + D + ++G+ L +E IL+ LM + K K + Sbjct: 118 RRQSSSKVKEQTLQYRDLILSKDAKSVLLEGQDLELTAKEYAILQLLMEHPKKVYTKANL 177 Query: 174 FSAIYGLFDEAV-EENVVESHISKLRKKLRN 203 + ++ DE + ++N V++HIS LR KL+ Sbjct: 178 YETVWE--DEYLGDDNAVKTHISNLRNKLKK 206 >gi|78045890|ref|YP_362065.1| two-component system response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927350|ref|ZP_08188603.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325928590|ref|ZP_08189775.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|78034320|emb|CAJ21965.1| two-component system response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541023|gb|EGD12580.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325542273|gb|EGD13762.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] Length = 227 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 1/158 (0%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R +R S VP+I ++ L + G DD + KP RE++ARV A+ RR + Sbjct: 67 LDICRDLRKESAVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHR 126 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + A + + D V G L + E R+L L A G+ ++ Q+ +Y Sbjct: 127 HDPHGAPAPGLHIDEDACRASVDGRALDLTQVEFRLLRTLAAAPGRVYSREQLMGRLYAD 186 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V + V+SH+ LR+KL + G D V S GY Sbjct: 187 H-RIVTDRTVDSHVKNLRRKLADAGGEDWVRSVYGAGY 223 >gi|260654507|ref|ZP_05859997.1| phosphate regulon transcriptional regulatory protein PhoB [Jonquetella anthropi E3_33 E1] gi|260630784|gb|EEX48978.1| phosphate regulon transcriptional regulatory protein PhoB [Jonquetella anthropi E3_33 E1] Length = 237 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 103/229 (44%), Gaps = 35/229 (15%) Query: 8 RALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPR 65 +AL + GY A + DG LE L + R D+ ++ L G +G +V R Sbjct: 21 QALKRSGYEASWAGDGDTGLE----------LIMTGRPDLVLLDLMLPGLEGWEVCRRMR 70 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 P+I ++ + +G DD + KP E++ARV A RR ++ Sbjct: 71 QAPETRDTPVIMVTARRDESEAVAGLAAGADDYIRKPFSLAELMARVEAQLRRRSMARQD 130 Query: 126 A------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A ETG +R+ DG + E+ F +ILE L + G+ V++ +I Sbjct: 131 AEETKDERIVLDQETGVVRI--DGWEAELSPTEF-------QILELLASRPGRPVSRDRI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + ++GL + E +++H+S+LRKKL + + R GY ++W Sbjct: 182 TAVVWGL--DPAESRALDTHLSRLRKKLSGCPDGPEITTLRSRGYRLEW 228 >gi|300021884|ref|YP_003754495.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299523705|gb|ADJ22174.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 225 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 15/217 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66 ++LVK GY +DG + GF + DV I+ L G G +++ R Sbjct: 18 QSLVKHGYDVDVSNDGQN--GFKHAVVGGF-------DVLVIDRMLPGLDGLSIVQRLRA 68 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-- 124 R S P++ ++ ++ ++ F+SG DD + KP E++ARVAA+ RR +++ Sbjct: 69 ARVSS--PILFLTAVGGIEDRIEGFESGADDYLVKPFALGELVARVAALGRRPPIAHEDF 126 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + V R+ + GE+ L RE R+LE L+ NRG+ V ++ + ++ L + Sbjct: 127 YYRIADLEVDLIKREIKRGGEIIRLQPREFRMLEILVRNRGRVVTRSMLLEQVWDLELDP 186 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++V++++S+LR K+ + + R LGY ID Sbjct: 187 -KTSIVQTNVSRLRLKIDRPGDIPLIRTVRGLGYRID 222 >gi|258655036|ref|YP_003204192.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558261|gb|ACV81203.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 226 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 88/178 (49%), Gaps = 14/178 (7%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G E+ + +R VP+I ++ S + + G DD + KP RE++AR+ Sbjct: 53 LMLPGMSGTEVCKQLRGRGAVPVIMVTAKDSEIDKVVGLELGADDYITKPYSTRELIARI 112 Query: 113 AAIYRRLKVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR +++ + GP+R+ D V G LP +E +LEYL+ N G+ + Sbjct: 113 RAVLRRGADADDAHSPVLQAGPVRMDVDRHVVSVHGVPTSLPLKEFDLLEYLIRNAGRVL 172 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 + Q+ ++G D + ++ H+ K+LR K+ DP + + R LGY ++ Sbjct: 173 TRGQLIDRVWG-ADYVGDTKTLDVHV----KRLRAKIEPDPAEPRYLVTVRGLGYKLE 225 >gi|225575075|ref|ZP_03783685.1| hypothetical protein RUMHYD_03164 [Blautia hydrogenotrophica DSM 10507] gi|225037745|gb|EEG47991.1| hypothetical protein RUMHYD_03164 [Blautia hydrogenotrophica DSM 10507] Length = 223 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR +SQVP+I IS P + G DD + KP ++A+V A+ RR ++ Sbjct: 67 IRKNSQVPVIFISSAPDNMNIVMAMTRGADDFIAKPFDLDVLVAKVQAMLRRTYAFGMTG 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N E + + + +V L + E RIL+ L N GK V++ I + ++ D Sbjct: 127 NLMEHKGVVLNLGNSTLTFKEQVLELTKNEFRILQILFENEGKIVSRDAIMNRLWE-NDS 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V++N + ++++LR+KL + D + +K+ LGY I Sbjct: 186 FVDDNTLTVNMTRLRRKLESFGLADFILTKKGLGYRI 222 >gi|120613269|ref|YP_972947.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|326319347|ref|YP_004237019.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|120591733|gb|ABM35173.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] gi|323376183|gb|ADX48452.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 224 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 82/160 (51%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ S +P++ ++ S+ + D G DD + KP +E+ ARV A+ RR + Sbjct: 64 LKRLRGRGSALPVLILTAADSVDERVKGLDYGADDYMAKPFSLQELEARVRALTRRGMGA 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +++ GP+ GR + G++ L RE +LE L+ G+ V+K Q+ + + Sbjct: 124 TSSTIRHGPLVYDQAGRMATIDGKLVELSARELGLLEVLLQRAGRLVSKEQLVERLCE-W 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E V N +E +I +LRKK+ G + + R LGY ++ Sbjct: 183 GEEVSNNAIEVYIHRLRKKIER--GPIRIATVRGLGYCLE 220 >gi|164687696|ref|ZP_02211724.1| hypothetical protein CLOBAR_01338 [Clostridium bartlettii DSM 16795] gi|164603470|gb|EDQ96935.1| hypothetical protein CLOBAR_01338 [Clostridium bartlettii DSM 16795] Length = 223 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 8/160 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ IS + + G DD ++KP ++A++ AI RR S+ Sbjct: 67 IRKLSKVPIVFISSASDNMNIVMAMNMGGDDFISKPFDLHVLIAKIQAILRRTYDFSTSS 126 Query: 124 NRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N E G I +D GE L + E +IL+ L+ N+ K V++ + ++ D Sbjct: 127 NLLEHRGAILNINDN-SISYNGEKVELTKNEYKILQTLLENKNKTVSRDNLMIKLWET-D 184 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 VEEN + ++++LRKKL + +G + + +K+ LGY ++ Sbjct: 185 NYVEENTLNVNVTRLRKKLES-IGLNNFIKTKKGLGYIVE 223 >gi|330685400|gb|EGG97058.1| heme response regulator HssR [Staphylococcus epidermidis VCU121] Length = 224 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 43/180 (23%), Positives = 89/180 (49%), Gaps = 4/180 (2%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 D++ ++ + G EL +I+ +P+I ++ +L F SG DD + KP Sbjct: 47 DIAIVDIMM--HGMDGFELCHMIKEDYDLPVIMLTARDALSDKERAFISGTDDYLTKPFE 104 Query: 105 HREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163 +E++ R+ A+ RR + + T G + + + V G+ LP +E ++L L +N Sbjct: 105 VKELIFRIKAVLRRYHIHTDEKLTIGNLTLHQAYMEVVVNGKTMTLPNKEFQLLFLLASN 164 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + ++T + I+G +D +E ++ HI +LR++L+ + + R GY ++ + Sbjct: 165 EKQIFSRTHLIEKIWG-YDYEGDERTIDVHIKRLRQRLQQLDSNVTIKTVRGQGYKVEHH 223 >gi|170690683|ref|ZP_02881849.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170143932|gb|EDT12094.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 225 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 5/202 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D + + + +L+ + + L S DV ++ L G+ V Sbjct: 3 LLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDAADRLLQSNHYDVILLDLNLPKLSGKNV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R+ + P++ ++ S+ ++ +G DD + KP RE++AR+ RR Sbjct: 63 LR--RLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + G + D R ++G + RER +LE L+ GK V K + AI+ Sbjct: 121 PSKASEVVCGDLTFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 L DE E+ VE +IS+LRKKL Sbjct: 181 LADEP-SEDAVEIYISRLRKKL 201 >gi|157376378|ref|YP_001474978.1| two component transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157318752|gb|ABV37850.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 231 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 10/152 (6%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAET 128 P++ ++ S Q ++ D+G DD + KP H E++AR+ A+ RR V NN Sbjct: 74 PILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRSAGKASPVVNN---- 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 GP + + + + V L E ++ EY M + G+ ++KT + IY D ++ N Sbjct: 130 GPFSINTSSLEIKKGDVVITLSGTEYKLFEYFMLHPGEVISKTVLTEHIYDQ-DFDLDSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+E I +LRKKL F +++ R GY + Sbjct: 189 VIEVFIRRLRKKLDPDNSFSLIETLRGQGYRL 220 >gi|293375797|ref|ZP_06622067.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|292645574|gb|EFF63614.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] Length = 228 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 7/149 (4%) Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 KGE E+ + IRA S V L ++ SL+ + + G DD + KP RE++AR+ + Sbjct: 58 KGE---EICQQIRAISDVYLFMLTAKGSLEHRILGLNLGADDYLVKPFSPRELVARIKTV 114 Query: 116 YRRLK--VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR+ + N N + G + + R +VQ E+ P E +L LM N+GK + + Q Sbjct: 115 VRRMNGPLQNINLYDDGYLLIDQSKRIVKVQEEIVPFTTTEFNLLVLLMDNKGKVLTREQ 174 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + + I G FD + ++ HI +RKK+ Sbjct: 175 LINQILG-FDFNGYDRTIDVHIKNIRKKI 202 >gi|325679549|ref|ZP_08159129.1| transcriptional regulatory protein afsQ1 [Ruminococcus albus 8] gi|324108836|gb|EGC03072.1| transcriptional regulatory protein afsQ1 [Ruminococcus albus 8] Length = 220 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 101/226 (44%), Gaps = 30/226 (13%) Query: 16 IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELP 64 I L DD + EG E +A V+ +A L G+ + + ++ Sbjct: 3 ILLVEDDPIIQEGLKLALTSEGCGFAAASSVAEAKALLGGEYDICILDVMLPDGTGYDVC 62 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 IR P+I ++ T+ ++G DD + KP RE++AR+ A+ RR+ Sbjct: 63 AEIRRKGDTPVIFLTACDDELHTVLALENGADDYIAKPFRMRELMARIKAVLRRMGRKTD 122 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 KV +N +VF DG EV L E ++L + NRG +++ Q+ Sbjct: 123 SEEPVKVGSNDVNVRTGKVFRDG------SEVI-LTAMEYKLLLIFINNRGAVLSRQQLL 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+ + + V +N + ++ +LR+KL N G + + + R LGY + Sbjct: 176 HNIWDVAGDYVTDNTLTVYVKRLREKLEN--GDEVIQTVRGLGYRL 219 >gi|254496524|ref|ZP_05109395.1| DNA-binding response regulator [Legionella drancourtii LLAP12] gi|254354263|gb|EET12927.1| DNA-binding response regulator [Legionella drancourtii LLAP12] Length = 222 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 83/158 (52%), Gaps = 14/158 (8%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 + P+I ++ S++ + DSG DD + KP E+ AR+ A+ RR S RA++ Sbjct: 68 NSTPVIILTARESVEDRIKGLDSGADDYLVKPFDLNELSARIRALVRR---SQGRADS-V 123 Query: 131 IRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 ++ + DP + +PRRE +L+ L+ N G+ +++ Q+ +IYG ++E V Sbjct: 124 LQYKNITLDPAAHSVLVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYG-WEEDV 182 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + N +E HI LRKKL + + R +GY + N Sbjct: 183 DSNALEVHIHNLRKKLNANF----IRTIRGVGYMAEKN 216 >gi|29376802|ref|NP_815956.1| DNA-binding response regulator VanRB [Enterococcus faecalis V583] gi|256960861|ref|ZP_05565032.1| regulatory protein vanRB [Enterococcus faecalis Merz96] gi|2500744|sp|Q47744|VANR_ENTFA RecName: Full=Regulatory protein vanRB gi|1209526|gb|AAB05622.1| response regulator [Enterococcus faecalis] gi|29344267|gb|AAO82026.1| DNA-binding response regulator VanRB [Enterococcus faecalis V583] gi|256951357|gb|EEU67989.1| regulatory protein vanRB [Enterococcus faecalis Merz96] Length = 220 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 5/160 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R RA + P++ ++ + + FD+ DD V KP R +L RV A+ RR Sbjct: 63 ELLREFRAQNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMRILLKRVEALLRRSGA 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + G PL R+E IL L+ N+G+ + I S I+G + Sbjct: 123 LAKEFRVGRLTLLPEDFRVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + + V +HI LR KL + + + R +GY ++ Sbjct: 182 DFDGDGSTVHTHIKNLRAKLPENI----IKTIRGVGYRLE 217 >gi|77405926|ref|ZP_00783006.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77410761|ref|ZP_00787119.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77413495|ref|ZP_00789685.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|77160439|gb|EAO71560.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|77163140|gb|EAO74093.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77175437|gb|EAO78226.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|319744716|gb|EFV97059.1| response regulator VanR [Streptococcus agalactiae ATCC 13813] Length = 228 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 9/168 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 EL R+IR SQ+P+I ++ + + + G DD + KP + E+LAR+ + RR Sbjct: 56 ELTRLIRQDSQIPIIMLAAKTTDMDRILGLNIGADDFITKPFNSLEVLARINSQLRRYYE 115 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K N + G + + + + G+ L E +IL LM++ G+ KTQ++ Sbjct: 116 FNSLAKPKNQFIKIGELELDEEHVELTKNGKHIKLTATEFKILHILMSSPGRIYTKTQLY 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 I G + E +E + HIS +R K+ + + + + R +GY I+ Sbjct: 176 EKINGRYLEG-DETTIMVHISNIRDKIEDDSKYPKYIKTLRGVGYKIE 222 >gi|296134173|ref|YP_003641420.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032751|gb|ADG83519.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 228 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 84/163 (51%), Gaps = 4/163 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R S+ P+I ++ + + D G DD + KP E+LAR+ A+ +R K Sbjct: 63 MEVLRRLRQVSETPVIMLTAKDEVTDKVMGLDIGADDYMTKPFAIEELLARIRAVLKRRK 122 Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +N++ + G +++ + E L ++E +L YL+ N+ + + +I + Sbjct: 123 PANHKRDIITAGDLKINLEQHSVCFNKEPVDLTKKEYDLLCYLVQNKNMVLTRDKILETV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D + NVV+ +I LR K+ ++ + + R +GY I Sbjct: 183 WG-YDYYGDTNVVDVYIRYLRSKIDDRFNTKLIHTVRGVGYII 224 >gi|315222895|ref|ZP_07864775.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|319939034|ref|ZP_08013398.1| transcriptional regulatory protein ciaR [Streptococcus anginosus 1_2_62CV] gi|315188034|gb|EFU21769.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|319812084|gb|EFW08350.1| transcriptional regulatory protein ciaR [Streptococcus anginosus 1_2_62CV] Length = 224 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 73/147 (49%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K + N G + Sbjct: 73 TPVLIMTAKESLNDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLSYGDV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V V G L +E +L Y + N+ + KTQIF ++G FD +VVE Sbjct: 133 TVNLSTNTTLVDGNEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + + R +GY Sbjct: 192 VYVSKIRKKLKGTTFANNLQTLRSVGY 218 >gi|315173434|gb|EFU17451.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] Length = 224 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 13/162 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I IS + + + G DD V KP ++A++ A+ RR S N + Sbjct: 67 IREVSKVPIIFISSRSTNMDMIMAMNMGADDFVTKPFQIDVLIAKINALLRR---SYNYS 123 Query: 127 ETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +T I + D E++GE+ L + E R+L LM GK + + ++ A++ Sbjct: 124 DTDSEVLSHNGITLNVDNGRMEIKGEMIDLSKNEYRLLYLLMKKHGKILTREKLLRALWD 183 Query: 180 LFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE V++N + +I++LRKK+ D +++K +GY + Sbjct: 184 --DERFVDDNTLTVNINRLRKKIEQSGIADYIETKVGVGYMV 223 >gi|240850121|ref|YP_002971514.1| two-component system regulatory protein [Bartonella grahamii as4aup] gi|240267244|gb|ACS50832.1| two-component system regulatory protein [Bartonella grahamii as4aup] Length = 221 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 22/139 (15%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEV 142 D+G DD V KP H E++AR+ A+ RR L N +T RVF D Sbjct: 91 IDAGADDYVVKPFHLEEVMARLRALIRRATGHATSALCCGNVLLDTKTSRVFVD------ 144 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201 G++ L E R+L YLM + + +++T++ +Y FD+ + N VE + +LRK Sbjct: 145 -GQLIKLTSYEFRLLSYLMHHCDRVISRTELTEHLYDQDFDK--DSNTVEVFVGRLRK-- 199 Query: 202 RNKLGFDPVDSKRFLGYSI 220 KLG D +++ R +GY + Sbjct: 200 --KLGVDLIETIRGMGYRV 216 >gi|254520016|ref|ZP_05132072.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226913765|gb|EEH98966.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 227 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 77/144 (53%), Gaps = 6/144 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +IIR S V + ++ SL + D G D+ + KP RE+ ARV A++RR+ Sbjct: 62 EICKIIRRTSDVYIFMLTSKASLNDRIVGLDIGADEYLIKPFSPRELTARVNALFRRINT 121 Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S ++ G +++ + R E++GE E IL L+ N+GK +++ Q+ ++ Sbjct: 122 SEKISDIFNDGILKIDYEKRIVELRGEEISFTPSEFDILYTLLINKGKVLSREQLIEIVF 181 Query: 179 GL-FDEAVEENVVESHISKLRKKL 201 G+ FD + ++ HI +RKK+ Sbjct: 182 GIDFDGY--DRTIDVHIKNIRKKI 203 >gi|256060736|ref|ZP_05450900.1| DNA-binding response regulator [Brucella neotomae 5K33] gi|261324726|ref|ZP_05963923.1| FeuP [Brucella neotomae 5K33] gi|261300706|gb|EEY04203.1| FeuP [Brucella neotomae 5K33] Length = 229 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 8/155 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 R+ +P++ ++ + D+G DD V KP H E+LAR+ A+ RR +++ Sbjct: 68 RSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAGHASSEF 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 GP+ + + + G L E R+L Y+M + + V++T++ +Y FD Sbjct: 128 VCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYDQDFDR-- 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E + +LRK K+G D +++ R +GY + Sbjct: 186 DSNTIEVFVGRLRK----KMGVDLIETVRGMGYRM 216 >gi|238783795|ref|ZP_04627814.1| Two-component response regulator of virulence determinant [Yersinia bercovieri ATCC 43970] gi|238715346|gb|EEQ07339.1| Two-component response regulator of virulence determinant [Yersinia bercovieri ATCC 43970] Length = 218 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 106/219 (48%), Gaps = 5/219 (2%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 ++D AL++ + G ++ + ++ D++ I+ L GE L L Sbjct: 1 MEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLSLI 58 Query: 65 RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVS 122 R R+H + +P++ ++ S Q + ++G DD V KP H E++AR+ A+ RR + ++ Sbjct: 59 RRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIGLA 118 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + E P ++ R+ V + L E I+E L+ N G+ V+K + +Y Sbjct: 119 SQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNSGRVVSKETLMLQLYP-DA 177 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E + ++ + +LRKKL+ + + + + R GY D Sbjct: 178 ELRESHTIDVLMGRLRKKLQAEHEGEVITTIRGQGYRFD 216 >gi|225378732|ref|ZP_03755953.1| hypothetical protein ROSEINA2194_04402 [Roseburia inulinivorans DSM 16841] gi|225209569|gb|EEG91923.1| hypothetical protein ROSEINA2194_04402 [Roseburia inulinivorans DSM 16841] Length = 251 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 85/167 (50%), Gaps = 5/167 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +L R + ++VP+I ++ S + D G DD ++KP E+++RV A+ Sbjct: 88 GLDILTKIRTDKNTAKVPIIMVTAKTSELDKVKGLDLGADDYISKPFGVMELISRVKALL 147 Query: 117 RRLKVSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + ++ I V +D V G++ L +E +L+YL+ N+G +++ +I Sbjct: 148 RRTTNAQEESQIAYENILVDNDKHAVYVDGKLCELTYKEFELLKYLVINKGIVLSRDKIM 207 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++G FD E V+ HI LR+KL + + R +GY ++ Sbjct: 208 NQVWG-FDYEGESRTVDMHIKTLRQKLGE--AGSHIKTVRNVGYMVE 251 >gi|148559307|ref|YP_001258597.1| DNA-binding response regulator [Brucella ovis ATCC 25840] gi|225627111|ref|ZP_03785149.1| DNA-binding response regulator [Brucella ceti str. Cudo] gi|254701398|ref|ZP_05163226.1| DNA-binding response regulator [Brucella suis bv. 5 str. 513] gi|254707679|ref|ZP_05169507.1| DNA-binding response regulator [Brucella pinnipedialis M163/99/10] gi|254709738|ref|ZP_05171549.1| DNA-binding response regulator [Brucella pinnipedialis B2/94] gi|254713741|ref|ZP_05175552.1| DNA-binding response regulator [Brucella ceti M644/93/1] gi|254717201|ref|ZP_05179012.1| DNA-binding response regulator [Brucella ceti M13/05/1] gi|254718753|ref|ZP_05180564.1| DNA-binding response regulator [Brucella sp. 83/13] gi|256031228|ref|ZP_05444842.1| DNA-binding response regulator [Brucella pinnipedialis M292/94/1] gi|256159331|ref|ZP_05457121.1| DNA-binding response regulator [Brucella ceti M490/95/1] gi|256254636|ref|ZP_05460172.1| DNA-binding response regulator [Brucella ceti B1/94] gi|256369043|ref|YP_003106551.1| DNA-binding response regulator [Brucella microti CCM 4915] gi|260168364|ref|ZP_05755175.1| DNA-binding response regulator [Brucella sp. F5/99] gi|261219017|ref|ZP_05933298.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261221811|ref|ZP_05936092.1| FeuP [Brucella ceti B1/94] gi|261315175|ref|ZP_05954372.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261317269|ref|ZP_05956466.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261321483|ref|ZP_05960680.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261751937|ref|ZP_05995646.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261757824|ref|ZP_06001533.1| transcriptional regulatory protein PHOP [Brucella sp. F5/99] gi|265983731|ref|ZP_06096466.1| DNA-binding response regulator [Brucella sp. 83/13] gi|265988307|ref|ZP_06100864.1| FeuP [Brucella pinnipedialis M292/94/1] gi|265997775|ref|ZP_06110332.1| FeuP [Brucella ceti M490/95/1] gi|306838729|ref|ZP_07471564.1| two component transcriptional regulator [Brucella sp. NF 2653] gi|306842126|ref|ZP_07474795.1| two component transcriptional regulator [Brucella sp. BO2] gi|306845210|ref|ZP_07477786.1| two component transcriptional regulator [Brucella sp. BO1] gi|148370564|gb|ABQ60543.1| DNA-binding response regulator [Brucella ovis ATCC 25840] gi|225617946|gb|EEH14990.1| DNA-binding response regulator [Brucella ceti str. Cudo] gi|255999203|gb|ACU47602.1| DNA-binding response regulator [Brucella microti CCM 4915] gi|260920395|gb|EEX87048.1| FeuP [Brucella ceti B1/94] gi|260924106|gb|EEX90674.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261294173|gb|EEX97669.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261296492|gb|EEX99988.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261304201|gb|EEY07698.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261737808|gb|EEY25804.1| transcriptional regulatory protein PHOP [Brucella sp. F5/99] gi|261741690|gb|EEY29616.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262552243|gb|EEZ08233.1| FeuP [Brucella ceti M490/95/1] gi|264660504|gb|EEZ30765.1| FeuP [Brucella pinnipedialis M292/94/1] gi|264662323|gb|EEZ32584.1| DNA-binding response regulator [Brucella sp. 83/13] gi|306274369|gb|EFM56176.1| two component transcriptional regulator [Brucella sp. BO1] gi|306287713|gb|EFM59144.1| two component transcriptional regulator [Brucella sp. BO2] gi|306406216|gb|EFM62460.1| two component transcriptional regulator [Brucella sp. NF 2653] Length = 229 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 8/155 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 R+ +P++ ++ + D+G DD V KP H E+LAR+ A+ RR +++ Sbjct: 68 RSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAGHASSEF 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 GP+ + + + G L E R+L Y+M + + V++T++ +Y FD Sbjct: 128 VCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYDQDFDR-- 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E + +LRK K+G D +++ R +GY + Sbjct: 186 DSNTIEVFVGRLRK----KMGVDLIETVRGMGYRM 216 >gi|293374574|ref|ZP_06620892.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|292646807|gb|EFF64799.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] Length = 230 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 27/238 (11%) Query: 1 MFVLIDD--------RALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEA 51 +FV+ DD R L K+GY + F + E FN L+ D ++ Sbjct: 4 VFVIDDDANIRQLILRYLEKEGYKVTAFKNAEHVFEAFNMLQ----------PDALVLDI 53 Query: 52 FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 + G + L+L + IR SQVP+I +S + + G DD ++KP RE+L R Sbjct: 54 MMPGTMDG-LDLCKKIRTVSQVPIIFVSAKDEAVDRIIGLELGADDYLSKPFSPRELLVR 112 Query: 112 VAAIYRRLK---VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 + I+RR++ VS++ T I ++ R V+ + L E +L YL+ N+ Sbjct: 113 LKIIFRRIEPVMVSDHETTTYQIKDLKIDDSKRVCSVKDKELSLTNNEYMLLAYLVKNKN 172 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + + I+G +D E +++ + +LRKKL++ + + GY ID N Sbjct: 173 ISFTRENLIQNIWG-YDYVGESRMIDDLVKRLRKKLKSFDAQVEITTVWGYGYRIDDN 229 >gi|260588461|ref|ZP_05854374.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|331082261|ref|ZP_08331388.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541335|gb|EEX21904.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|330403055|gb|EGG82620.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium 6_1_63FAA] Length = 225 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 76/144 (52%), Gaps = 3/144 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + R IR S++P+I ++ + L F+ GVD+ ++KP + ++ARV AI RR Sbjct: 66 VCREIRKDSKIPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTSAI 125 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S++ G I + + G+ L +E +L Y + N+G +++ +I ++++ Sbjct: 126 GSDDILSAGGIEINKTSHTASIDGKTMDLSYKEFELLTYFLENQGIALSREKILNSVWN- 184 Query: 181 FDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR K+ K Sbjct: 185 YDYFGDARTIDTHVKKLRSKIGAK 208 >gi|222056727|ref|YP_002539089.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221566016|gb|ACM21988.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 226 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 91/199 (45%), Gaps = 6/199 (3%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRIIRAHSQVPLIGISDYPS 83 EGF +L F Q + A++ ++ G + EL + IR VP+I ++ Sbjct: 25 EGFETLCFPSGTQVVSSLADHAVDLIILDVGLPDMSGFELCKQIRQLRSVPIIFLTARAD 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPIRVFSDGRDPEV 142 + + G DD + KP RE+ ARV A+ RR N + TG V R Sbjct: 85 EIDRIVGLEIGADDYITKPFSPREVSARVKAVLRRTGTGNKPSPCTGTFAVNESKRQISY 144 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 G V L R E IL+ + G ++ Q+ ++ D +++ +++HI +R KLR Sbjct: 145 LGRVLDLSRYEFDILKTFIRRPGHVFSRDQLMQIVWEHPDCSLDRT-IDAHIKNIRAKLR 203 Query: 203 N-KLGFDPVDSKRFLGYSI 220 + G DP+ + R GY++ Sbjct: 204 TIEPGKDPIVTYRGTGYAL 222 >gi|294851972|ref|ZP_06792645.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|294820561|gb|EFG37560.1| two-component system protein [Brucella sp. NVSL 07-0026] Length = 210 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 8/155 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126 R+ +P++ ++ + D+G DD V KP H E+LAR+ A+ RR +++ Sbjct: 49 RSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAGHASSEF 108 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 GP+ + + + G L E R+L Y+M + + V++T++ +Y FD Sbjct: 109 VCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYDQDFDR-- 166 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E + +LRK K+G D +++ R +GY + Sbjct: 167 DSNTIEVFVGRLRK----KMGVDLIETVRGMGYRM 197 >gi|307721598|ref|YP_003892738.1| two component transcriptional regulator, winged helix family [Sulfurimonas autotrophica DSM 16294] gi|306979691|gb|ADN09726.1| two component transcriptional regulator, winged helix family [Sulfurimonas autotrophica DSM 16294] Length = 218 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 26/219 (11%) Query: 8 RALVKDGYI---ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 R +DGYI AL G+DG L G NS DV ++ L K +E+ Sbjct: 18 RGFDEDGYIVDSALDGEDGEYLAGMNSY------------DVIIMDWMLPYKSG--IEIT 63 Query: 65 RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 + +R P++ +S ++ + G DD + KP ++E++ARV A++RR +SN Sbjct: 64 KSLREKKITTPILILSAKGEIEDKVTGLQHGADDYLAKPFSYKELVARVEALHRR-DISN 122 Query: 124 --NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N G I + SD + E L +E +L +L+ ++ V+ I ++ Sbjct: 123 GVNLITLGNIIINSDTKTVRKDDENIELSAKEYELLLFLIKHKNGFVSNAMIEEQLWN-N 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E + NV++ I LRK KLG + + S R +GY I Sbjct: 182 QEYINSNVIQVTIYHLRK----KLGKEFIKSNRGIGYKI 216 >gi|284047511|ref|YP_003397850.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283951732|gb|ADB46535.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 225 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 84/171 (49%), Gaps = 7/171 (4%) Query: 37 WLQSSARE-DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94 W A++ D+ ++ L G+ G +L+ R +A S +P+I ++ S + D+G Sbjct: 38 WKALEAKQPDLVLLDIMLPGESGLDILKKLRDSQATSGLPVIMLTARTSEYDVVTGLDAG 97 Query: 95 VDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 DD ++KP E+L+RV A+ RR N G I + QG+ L Sbjct: 98 ADDYISKPFGIMELLSRVKAVLRRGGRQKPQDRNLLVCGDITLDLKKHRVTTQGQPCELT 157 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +E +L YLMAN G +++ QI A++ F A E ++ HI LR+KL Sbjct: 158 VKEFDLLHYLMANAGIVLSRDQIMEAVWS-FSYAGESRTIDMHIRSLRQKL 207 >gi|163751031|ref|ZP_02158262.1| DNA-binding response regulator [Shewanella benthica KT99] gi|161329192|gb|EDQ00191.1| DNA-binding response regulator [Shewanella benthica KT99] Length = 237 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 12/153 (7%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TG 129 P++ ++ S Q ++ D+G DD + KP H E++AR+ A+ RR S +A G Sbjct: 74 PILILTARDSWQDKVEGLDAGADDYLTKPFHPEELIARLNALIRR---SAGKASPLVYNG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P + + + + G++ L E ++ E+ M + G+ +KT + IY D ++ NV Sbjct: 131 PFSINTSTLEVKKSGQLMNLSSSEYKLFEFFMLHPGEVKSKTVLIEHIYDQ-DFDLDSNV 189 Query: 190 VESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220 +E I +LRKKL N+LG +++ R GY + Sbjct: 190 IEVFIRRLRKKLDPDNQLGL--IETLRGQGYRL 220 >gi|126664543|ref|ZP_01735527.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Marinobacter sp. ELB17] gi|126630869|gb|EBA01483.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Marinobacter sp. ELB17] Length = 226 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 94/191 (49%), Gaps = 15/191 (7%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVD 96 + +S D+ ++ L G L + + +RA +QVP++ +S + ++ G D Sbjct: 39 MAASEEYDIMIVDRML--PGMDGLAIIKTVRATGNQVPILILSALGDVDDRVEGLRGGGD 96 Query: 97 DVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLP 150 D + KP E+LAR+ ++ RR + AET + +D R + G+ + Sbjct: 97 DYLTKPFSFTELLARIESLIRR---NRQAAETETVLHVADLEMDLLARTVKRAGQNIDVQ 153 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209 RE R+LEYLM N G+ V +T + ++ FD + NV++ HIS+LR K+ + Sbjct: 154 PREFRLLEYLMRNAGQVVTRTMLLEKVWDYHFDP--QTNVIDVHISRLRAKIDKEFDTPL 211 Query: 210 VDSKRFLGYSI 220 + + R GY + Sbjct: 212 LQTVRGAGYML 222 >gi|126699068|ref|YP_001087965.1| two-component response regulator [Clostridium difficile 630] gi|115250505|emb|CAJ68329.1| Two-component response regulator [Clostridium difficile] Length = 234 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 22/195 (11%) Query: 40 SSAREDVSAIEAFLI--------GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFF 91 SS +E +S+ E +I G G EL + IR SQVP+I ++ + Sbjct: 35 SSGKEMISSNEYSMILLDVTLPDGTG---YELCQYIRGFSQVPIIFLTACDEEVNIVMGL 91 Query: 92 DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP--- 148 D G DD + KP RE+++R+ A+ RR N E I F D ++ V+ Sbjct: 92 DIGGDDYITKPFRIRELISRIKAVLRR--KGNTSEENKKILKFGDLSIYTLEARVYKNDK 149 Query: 149 ---LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 L E ++L L+ N+ +++TQI ++ + + V +N + +I +LR+K+ + L Sbjct: 150 EIFLTSVEYKLLLILIQNKNTVLSRTQILEKLWDVTYDFVNDNTLTVYIKRLREKIGDDL 209 Query: 206 GFDP--VDSKRFLGY 218 +P +++ R +GY Sbjct: 210 C-EPIYIETVRGIGY 223 >gi|116249330|ref|YP_765171.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115253980|emb|CAK12376.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 222 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 10/160 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ ++ +++P+I ++ SL + DSG DD + KP E+ AR+ A+ RR Sbjct: 63 LKRLRQSGNKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRR---G 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +RA + G +R R V E+ L RE +LE L+ G V+K + +++ Sbjct: 120 QDRASSEITVGNLRFSGGTRQFFVADELLQLTPREYAVLEQLVMKLGNTVSKAALSESVF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G FD+ + + +E ++ +LRKKL + + + R LGY Sbjct: 180 G-FDDEADPSAIEIYVHRLRKKLESS--SVQIATLRGLGY 216 >gi|225570802|ref|ZP_03779825.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM 15053] gi|225160264|gb|EEG72883.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM 15053] Length = 226 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 78/145 (53%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR SQ P+I ++ + L F+ GVD+ ++KP + ++ARV AI RR V Sbjct: 65 QVCREIRQSSQTPVIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVEAILRRSHV 124 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G I++ + + +G+ L +E +L Y + N G +++ +I + ++ Sbjct: 125 LGAEEIIDAGGIQINKAAHEVKAEGKQIDLSYKEFELLVYFVENEGIALSREKILNNVWN 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR KL +K Sbjct: 185 -YDYFGDARTIDTHVKKLRNKLGDK 208 >gi|206562188|ref|YP_002232951.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198038228|emb|CAR54181.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 220 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 18/172 (10%) Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G +L R R H+ P++ ++ ++ + +G DD + KP E++AR A+ Sbjct: 58 SGTDLLGWIRKRRDHT--PVLVMTARDTVADRVSGLSAGADDYLGKPFDLAELIARCRAL 115 Query: 116 YRRLKV-SNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVA 169 RR + + E G + V DP + E L RE +L L+AN+G+ ++ Sbjct: 116 VRRSQGRGTDTIEYGELTV-----DPALMTVVRGAERIALTSRECALLVELLANQGRPLS 170 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + Q+ ++YG ++E +E N +E H+S LRK KLG + + + R +GY ++ Sbjct: 171 RAQLQDSLYG-WNEEIESNAIEVHVSNLRK----KLGAELIRTIRGVGYVVE 217 >gi|160896325|ref|YP_001561907.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160361909|gb|ABX33522.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 224 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 112/225 (49%), Gaps = 9/225 (4%) Query: 1 MFVLI-DDRALVKDGYI-ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 M +LI +D ++ DG + +L G V N E + L +S+ D+ ++ L Sbjct: 1 MRILIAEDDQVLADGLLRSLRGSGAVVSHVANGSEADTALMTSSEFDLLILDLGL--PKM 58 Query: 59 KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ + +R +P++ ++ S++ + D G DD + KP E+ ARV A+ R Sbjct: 59 HGLEVLKKLRGRGDALPVLILTAADSVEERVQGLDYGADDYMAKPFALSELEARVRALTR 118 Query: 118 R-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + +++ + GP+ GR + G++ L RE +LE L+ G+ V+K Q+ Sbjct: 119 RGMGGASSTIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVER 178 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + DE V N +E +I +LRKK+ G + + R LGY ++ Sbjct: 179 LCEWGDE-VSNNAIEVYIHRLRKKIER--GPIRIATVRGLGYCLE 220 >gi|325838529|ref|ZP_08166551.1| putative transcriptional regulatory protein CssR [Turicibacter sp. HGF1] gi|325490824|gb|EGC93126.1| putative transcriptional regulatory protein CssR [Turicibacter sp. HGF1] Length = 230 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 27/238 (11%) Query: 1 MFVLIDD--------RALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEA 51 +FV+ DD R L K+GY + F + E FN L+ D ++ Sbjct: 4 VFVIDDDANIRQLILRYLEKEGYKVTAFENAEHVFEAFNMLQ----------PDALVLDI 53 Query: 52 FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 + G + L+L + IR SQVP+I +S + + G DD ++KP RE+L R Sbjct: 54 MMPGTMDG-LDLCKKIRTVSQVPIIFVSAKDEAVDRIIGLELGADDYLSKPFSPRELLVR 112 Query: 112 VAAIYRRLK---VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 + I+RR++ VS++ T I ++ R V+ + L E +L YL+ N+ Sbjct: 113 LKIIFRRIEPVMVSDHETTTYQIKDLKIDDSKRVCSVKDKELSLTNNEYMLLAYLVKNKN 172 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + + I+G +D E +++ + +LRKKL++ + + GY ID N Sbjct: 173 ISFTRENLIQNIWG-YDYVGESRMIDDLVKRLRKKLKSFDAQVEITTVWGYGYRIDDN 229 >gi|281412572|ref|YP_003346651.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] gi|281373675|gb|ADA67237.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] Length = 239 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 30/216 (13%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY L DG EE L+ + EDV ++ G EL R IRA Sbjct: 23 LSKEGYEVLKAYDG-----------EEALKIANDEDVDMFIVDIMLPGIDGFELVRKIRA 71 Query: 70 ---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 + P+I +S + + G DD + KP RE+LARV A++RRL + Sbjct: 72 IEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAVFRRLSAATQSK 131 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRI---------LEYLMANRGKRVAKTQIFSAI 177 E P ++ + RD E+ E + + R +++ L +L N GK ++ + + Sbjct: 132 EERPKKIIA--RDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDVLLDKL 189 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +G +D + V+ HI +LR K+ DP + K Sbjct: 190 WG-YDYYGDTRTVDVHIRRLRTKIEE----DPSNPK 220 >gi|147676370|ref|YP_001210585.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146272467|dbj|BAF58216.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 227 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 5/162 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R+++ V +I ++ + + + G DD + KP E+LAR+ A R + Sbjct: 67 EVCRMLKKMENVAVIMLTARDEVDDRVKGLNIGADDYMVKPFSFEELLARIHARVRN-QF 125 Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N E GP ++ ++ + +G V L E +L+YL+ N G ++K I ++G Sbjct: 126 PNLFGEVAIGPFQIDDRRKEIKFEGRVLELSPTEYELLKYLVLNHGLVLSKRMILDKVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D A EEN+VE ++ LR+KL++K + + R GY +D Sbjct: 186 -YDFAGEENIVEVYVRSLREKLKDK-DHQIIRTLRGAGYRVD 225 >gi|313888128|ref|ZP_07821802.1| response regulator receiver domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845818|gb|EFR33205.1| response regulator receiver domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 224 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 22/219 (10%) Query: 9 ALVKDGY---IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELP 64 LV GY AL GD+G + NS D+ ++ L GK G ++LE Sbjct: 19 GLVHSGYAVDTALDGDEGSFMAFTNSY------------DLIILDVNLPGKNGFEILEEI 66 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R +V +I ++ + + D G +D + KP H E+ AR+ ++ RR +S+ Sbjct: 67 R--ERDREVNVIMLTALSDVDDRVRGLDLGANDYILKPFHFEELKARIRSLLRRKTSISD 124 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + + R + E L +E ILEYL N G+ V ++ ++ DE Sbjct: 125 SIIRAHGVEFDTAKRTFAIDKEALKLTAKEAGILEYLFFNLGRYVTAEELMDHVWN--DE 182 Query: 184 A-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVV H+S LRKKL++KLG + + ++ GY ID Sbjct: 183 VDLFSNVVRVHMSALRKKLKDKLGKNIIRNEIGKGYIID 221 >gi|255525477|ref|ZP_05392414.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188589|ref|ZP_06856977.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium carboxidivorans P7] gi|255510842|gb|EET87145.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296046853|gb|EFG86299.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium carboxidivorans P7] Length = 227 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 6/151 (3%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ E+ R IR P+I ++ + + G DD ++KP R++ AR++A Sbjct: 57 GKNGYEVCREIRDIVNCPIIFLTAKSEEEDLITGLGVGGDDYISKPFSLRQLKARISAHL 116 Query: 117 RRLKVS-NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR + S NN + + GR GEV PL ++E ++E L N G+ +K Sbjct: 117 RRDQRSFNNENRVNLYFENLNIDLKGRTIFCMGEVIPLTKKEFGVIELLAVNCGQVFSKE 176 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 QI+ I+G +D + V HI K+R KL+ Sbjct: 177 QIYEKIWG-YDAEGDSATVAEHIKKIRYKLK 206 >gi|121996908|ref|YP_001001695.1| two component transcriptional regulator [Halorhodospira halophila SL1] gi|121588313|gb|ABM60893.1| two component transcriptional regulator, winged helix family [Halorhodospira halophila SL1] Length = 229 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 3/149 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETG 129 Q+P+I ++ + + FDSGVDD V KP RE+ ARV A+ RR ++ E Sbjct: 76 QIPIILLTARGEEEDKVRGFDSGVDDYVTKPFSPRELAARVKAVLRRTAPSTADTPLEAA 135 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 +R+ G+ L E R+L + MA+ + +TQ+ ++G + VEE Sbjct: 136 GLRLDPVSHRVTGHGQSLELGPTEYRLLRFFMAHPDRVFTRTQLLDQVWGT-NVYVEERT 194 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ HI +LRK L V + R GY Sbjct: 195 VDVHIRRLRKILATTGHDGLVQTVRGAGY 223 >gi|325660770|ref|ZP_08149398.1| hypothetical protein HMPREF0490_00130 [Lachnospiraceae bacterium 4_1_37FAA] gi|331085492|ref|ZP_08334577.1| hypothetical protein HMPREF0987_00880 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325472844|gb|EGC76054.1| hypothetical protein HMPREF0490_00130 [Lachnospiraceae bacterium 4_1_37FAA] gi|330407730|gb|EGG87228.1| hypothetical protein HMPREF0987_00880 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 219 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 17/217 (7%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 +AL KDG+I DG E +E +R D+ ++ + G L R I Sbjct: 19 KALEKDGHIVQTVQDG---EVVRQMEL-------SRYDLILLDVMM--PGIDGFTLCREI 66 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRA 126 R P++ ++ + + SG DD + KP E+ ARV A RR L+ Sbjct: 67 RETVDCPIVFLTAKTLEEDLMAGLGSGADDYICKPFGLGELRARVQAHLRRELREKKQVF 126 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + + + + + PL + E +I EYL + G+ +++ QI+ A++G E+ + Sbjct: 127 AVSGLHFYMQAKKVMAKDQKVPLTKSEYQICEYLALHHGQTLSREQIYEAVFGYEGES-D 185 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + + HI +R KL K+ +P+++ +GY WN Sbjct: 186 ASAITEHIKNIRAKL-IKVQAEPIETVWGMGYR--WN 219 >gi|260890602|ref|ZP_05901865.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254] gi|260859647|gb|EEX74147.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254] Length = 226 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 12/149 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR SQVP+I ++ + + FD G DD + KP + E+LAR+ A+ RR K Sbjct: 62 MEVCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTK 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF--------PLPRRERRILEYLMANRGKRVAKTQ 172 S I F D EVF L +RE +L++L+ N+G +++ + Sbjct: 122 KS---VVHKGIFEFEDLTINYSTYEVFREYGKNLIQLSKREFELLDFLVLNKGIVLSRDK 178 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I ++G FD +N+++ +I LR K+ Sbjct: 179 ILEEVWG-FDYIGNDNILDLYIKYLRDKI 206 >gi|255008379|ref|ZP_05280505.1| putative two-component response regulator [Bacteroides fragilis 3_1_12] gi|313146101|ref|ZP_07808294.1| two-component system response regulator [Bacteroides fragilis 3_1_12] gi|313134868|gb|EFR52228.1| two-component system response regulator [Bacteroides fragilis 3_1_12] Length = 229 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 75/140 (53%), Gaps = 8/140 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---- 123 + +QVP+I I+ + T+ F+ G DD ++KP RE++ARV A+ RR S+ Sbjct: 72 KKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTATSDMEKV 131 Query: 124 -NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + + + + + GE PL ++E IL L+ N+G+ ++ I S I+ D Sbjct: 132 PEQLSYQSLVIDITKKKVSIDGEEVPLTKKEFEILFLLLQNKGRVFSREDILSRIWS--D 189 Query: 183 EA-VEENVVESHISKLRKKL 201 E V + ++ +I++LRKK+ Sbjct: 190 EVYVLDRTIDVNITRLRKKI 209 >gi|223984503|ref|ZP_03634635.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM 12042] gi|223963489|gb|EEF67869.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM 12042] Length = 224 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 3/139 (2%) Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 I + H VP+I +S + FD GVDD V KP +E++ R+ AI +R S + Sbjct: 67 IRKTHENVPVILLSALGEEYDKIHGFDLGVDDYVVKPFSPKELMMRIHAILKRTSQSEKK 126 Query: 126 A--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + + GR +++ E L +E +L YL+ NRG + + ++ ++G +D Sbjct: 127 ELIKINDLTIDFTGRIVKIKDEKLNLSPKEYDLLFYLVKNRGIALTREKLLQNVWG-YDF 185 Query: 184 AVEENVVESHISKLRKKLR 202 +E +++HI LRK LR Sbjct: 186 FGDERTLDTHIKLLRKNLR 204 >gi|330721286|gb|EGG99372.1| DNA-binding response regulator [gamma proteobacterium IMCC2047] Length = 218 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 6/168 (3%) Query: 52 FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 ++ G + L +I +A VP+I ++ + + ++G DD + KP E+ AR Sbjct: 52 LMLPDGSGIELLIKIRKAGKTVPVIILTARDQISDRIKGLNAGADDYLVKPFDLSELSAR 111 Query: 112 VAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 +AA+ RR + N + GP+ + G L RE + E + G ++K Sbjct: 112 IAAVSRRYAGNPNPLLQIGPLEIDLSKHLISRAGTSINLTAREWALFEAFIQRPGTLISK 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Q+ +Y F +E N +E +IS+LRK KLG D +++ R LGY Sbjct: 172 SQLEDHLYA-FGTEIESNTIEVYISRLRK----KLGRDLLETVRGLGY 214 >gi|226313242|ref|YP_002773136.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226096190|dbj|BAH44632.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 234 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 105/236 (44%), Gaps = 25/236 (10%) Query: 1 MFVLIDDRALV--------KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52 +F++ DD+A+V K+GY DG EG E Q+ R D+ ++ Sbjct: 8 IFIIEDDQAIVEMVETYLTKEGYAVTVAGDGD--EGLRKFE-----QAQGRFDLLLVD-- 58 Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ +E+ R IRA+S VP++ +S S G DD + KP E+ AR+ Sbjct: 59 LMMPKIDGMEVIRRIRAYSHVPILIMSAKDSDIDKALGLGFGADDYIEKPFSMIELSARL 118 Query: 113 AAIYRR------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 AI RR ++ +N G +R+ D Q E L +E IL A+ + Sbjct: 119 KAIIRRATQYASVETKHNTLNMGDLRIDFDSFAVFKQEEPIKLTSKEFEILRLFAAHPNR 178 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 K QI++ ++ D +ENV+ H+S+LR K+ + +P K G W Sbjct: 179 VFTKAQIYAKVWN-DDYYGDENVINVHMSRLRDKIEDNPS-EPRYIKTLWGIGYKW 232 >gi|255100490|ref|ZP_05329467.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255306432|ref|ZP_05350603.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 241 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 22/195 (11%) Query: 40 SSAREDVSAIEAFLI--------GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFF 91 SS +E +S+ E +I G G EL + IR SQVP+I ++ + Sbjct: 42 SSGKEMISSNEYSMILLDVTLPDGTG---YELCQYIRGFSQVPIIFLTACDEEVNIVMGL 98 Query: 92 DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP--- 148 D G DD + KP RE+++R+ A+ RR N E I F D ++ V+ Sbjct: 99 DIGGDDYITKPFRIRELISRIKAVLRR--KGNTSEENKKILKFGDLSIYTLEARVYKNDK 156 Query: 149 ---LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 L E ++L L+ N+ +++TQI ++ + + V +N + +I +LR+K+ + L Sbjct: 157 EIFLTSVEYKLLLILIQNKNTVLSRTQILEKLWDVTYDFVNDNTLTVYIKRLREKIGDDL 216 Query: 206 GFDP--VDSKRFLGY 218 +P +++ R +GY Sbjct: 217 C-EPIYIETVRGIGY 230 >gi|304393600|ref|ZP_07375528.1| transcriptional activator protein CopR [Ahrensia sp. R2A130] gi|303294607|gb|EFL88979.1| transcriptional activator protein CopR [Ahrensia sp. R2A130] Length = 228 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 9/134 (6%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 +G DD + KP E+LARV A+ RR ++ + + G + + R E GE L Sbjct: 95 AGGDDYLTKPYAQTELLARVEALARRSTVQATETSSSVGDLSLDRLSRKAERSGEEIILQ 154 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209 RE R+L+YLM + G+ V +T + ++ L FD + NV++ H+S+LR K+ GFD Sbjct: 155 PREYRLLDYLMRHSGQLVTRTMLLENVWELNFDP--QTNVIDVHVSRLRSKIDK--GFDK 210 Query: 210 --VDSKRFLGYSID 221 + + R GY ++ Sbjct: 211 PLLHTVRGKGYRLE 224 >gi|253577302|ref|ZP_04854620.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843306|gb|EES71336.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 241 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 20/200 (10%) Query: 39 QSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDD 97 +++ R+D I L+ G E+ +R+ + P+I ++ + + + SG DD Sbjct: 40 ETALRQDFDLILLDLMLPGMNGFEIMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADD 99 Query: 98 VVNKPIHHREILARVAAIYRR----------LKVSNNRAETGPIRVFSDGRDPEVQGEVF 147 + KP E+LARVAA+ RR + N++ G + ++ + + + GE Sbjct: 100 YITKPFGVAELLARVAAVLRRSTGKEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPI 159 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L +E +L YL G + + + +A++G FD + V+ H+S LRKKL Sbjct: 160 TLRPKEFEVLLYLARKPGVVMTRDDLMNAVWG-FDYIGGQRTVDVHVSSLRKKLE----L 214 Query: 208 DP----VDSKRFLGYSIDWN 223 DP +DS R +GY + N Sbjct: 215 DPQSVHIDSIRGVGYKLVVN 234 >gi|325681430|ref|ZP_08160956.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324106920|gb|EGC01210.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 226 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 3/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NN 124 IR SQ P+I IS ++T L+ G DD + KP E+L R+ + RR S ++ Sbjct: 68 IRETSQTPVIVISAKSMMETKLEVLRLGADDYIIKPFDIDEVLVRIEVVLRRTAGSQHSD 127 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E G I + + + G L +E +L M + K K +++ +++ Sbjct: 128 SLEVGGIVLNNTENSVTLDGTAVRLTAKELMLLRLFMEHPQKVYTKAELYESVWN-DTYY 186 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E+N + H+S LR KL+ G D +D+ +GY + Sbjct: 187 YEDNTINVHVSNLRSKLKKAGGRDFIDTVWGIGYRL 222 >gi|80973243|gb|ABB53349.1| VanRB [Eggerthella lenta] Length = 219 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 5/160 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R RA + P++ ++ + + FD+ DD V KP + +L RV A+ RR Sbjct: 63 ELLREFRAKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSGA 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + G PL R+E IL L+ N+G+ + I S I+G + Sbjct: 123 LAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + + V +HI LR KL + + + R +GY ++ Sbjct: 182 DFESDGSTVHTHIKNLRAKLPENI----IKTIRGVGYRLE 217 >gi|24379561|ref|NP_721516.1| putative response regulator CiaR [Streptococcus mutans UA159] gi|290580438|ref|YP_003484830.1| putative response regulator [Streptococcus mutans NN2025] gi|24377506|gb|AAN58822.1|AE014950_5 putative response regulator CiaR [Streptococcus mutans UA159] gi|254997337|dbj|BAH87938.1| putative response regulator [Streptococcus mutans NN2025] Length = 224 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K + N G + V + V G+ L Sbjct: 91 FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENNLTYGELTVDTATNTTMVNGKEVEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + K+QIF I+G FD +VVE ++SK+RKKL++ Sbjct: 151 LGKEFDLLVYFLQNQNVILPKSQIFDRIWG-FDSDTTISVVEVYVSKIRKKLKDTTFGKN 209 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 210 LQTLRSVGY 218 >gi|294627534|ref|ZP_06706117.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598165|gb|EFF42319.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 227 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 1/158 (0%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R +R S VP+I ++ L + G DD + KP RE++ARV A+ RR + Sbjct: 67 LDICRDLRKESAVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHR 126 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + A +++ D V G L + E R+L L A G+ ++ Q+ +Y Sbjct: 127 HDPHGAPAPGLQIDEDTCRASVDGRTLDLTQVEFRLLRTLAAAPGRVYSREQLMGRLYAD 186 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V + V+SH+ LR+KL + G D V S GY Sbjct: 187 H-RIVTDRTVDSHVKNLRRKLADAGGEDWVRSVYGAGY 223 >gi|241888759|ref|ZP_04776065.1| transcriptional regulatory protein DltR [Gemella haemolysans ATCC 10379] gi|241864435|gb|EER68811.1| transcriptional regulatory protein DltR [Gemella haemolysans ATCC 10379] Length = 225 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 2/175 (1%) Query: 48 AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE 107 AI ++ + + V + ++ P++ ++ ++ + DSG DD + KP RE Sbjct: 48 AILDVMMPQMDGVTVVKKLRENKKSTPVLLLTAKSEIEDKVYGLDSGADDYLTKPFVTRE 107 Query: 108 ILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 +LARV ++ RR ++N E G + + + + + L +E +++E LM N G Sbjct: 108 LLARVRSMTRRQATFTSNVLELGNVSLSKYTFELSTEKDKVRLSNKEYQMMEMLMRNPGN 167 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + Q I+G +D E NVV +IS LRKKL+ + + R +GY+++ Sbjct: 168 VIQTEQFLERIWG-YDSDSEINVVWVNISYLRKKLKALDANIHIKATRNVGYTLE 221 >gi|227832117|ref|YP_002833824.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262184032|ref|ZP_06043453.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227453133|gb|ACP31886.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 232 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 22/202 (10%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ L DG S L+ A +V + L+ G ++ + +R Sbjct: 21 LRKEGFDVLLAPDGPS-----------ALEQFAANNVDIVLLDLMLPGMSGTDVCKQLRT 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128 S VP+I ++ S + + G DD V KP RE++AR+ A+ RR + S+ AE Sbjct: 70 TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGQDASSEHAEE 129 Query: 129 GPI-RVFSDGR---DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 P ++ GR D E V GE +P +E +LEYL+ N G+ + + Q+ I+G Sbjct: 130 EPDEQILEGGRVRMDVERHTVLVAGEPVSMPLKEFDLLEYLLRNAGRVLTRGQLIDRIWG 189 Query: 180 LFDEAVEENVVESHISKLRKKL 201 D + ++ H+ +LR K+ Sbjct: 190 -ADYVGDTKTLDVHVKRLRSKI 210 >gi|309812580|ref|ZP_07706325.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185] gi|308433431|gb|EFP57318.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185] Length = 226 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 25/221 (11%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY A G EG ++ E D+ ++ L G +++ R +R+ Sbjct: 21 LKKEGYEAFVAATGP--EGIDTFE-------RGGADLVLLDVML--PGMSGVDVCRELRS 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 S VP+I ++ S + + G DD V KP RE+LAR+ A+ RR AE G Sbjct: 70 RSSVPIIMLTAKDSEIDKVVGLEMGADDYVTKPYSGRELLARIKAVLRR----RGEAEAG 125 Query: 130 PIRVFSDGR---DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 GR D E V G+ +P +E +LE LM N G+ + + Q+ ++G Sbjct: 126 ESDELVVGRVAMDVERHVVTVGGKGVAMPLKEFELLEMLMRNEGRVLTRMQLIDRVWG-S 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 D + ++ HI +LR K+ G + + R LGY ++ Sbjct: 185 DYVGDTKTLDVHIKRLRAKIEPDPGLPQHILTVRGLGYKLE 225 >gi|269839879|ref|YP_003324572.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798] gi|269791609|gb|ACZ43749.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 233 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 17/167 (10%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ R +R S VP+I ++ + + G DD + KP RE+LAR+ A+ RR Sbjct: 60 LEVCRRLRQRSSVPIIMLTAKTDEVDRIVGLELGADDYLTKPFSMRELLARIKALLRRRS 119 Query: 119 ---LKVSNNRAETGPIRVFSDGR--DPEVQ-----GEVFPLPRRERRILEYLMANRGKRV 168 ++S+ + E+ ++ S DP + G+V L RE +L +L+ N+G Sbjct: 120 LIMAEISSQQQESRRQKLVSGDLEIDPAMHQVKRGGKVIQLTPREFDLLTFLVMNKGIVF 179 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 + ++ ++G +DEA++ V HI LR+K+ + DP D KR Sbjct: 180 SAERLLEEVWG-YDEALDVRTVPVHIRNLREKIED----DPSDPKRI 221 >gi|209885699|ref|YP_002289556.1| transcriptional regulatory protein QseB [Oligotropha carboxidovorans OM5] gi|209873895|gb|ACI93691.1| transcriptional regulatory protein QseB [Oligotropha carboxidovorans OM5] Length = 224 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 10/131 (7%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ--GEVFP 148 FD+G DD V KP H E+LAR+ A+ RR + ++E V D R V G Sbjct: 91 FDAGADDYVAKPFHLEEVLARIRALLRR-STGHAQSELTCGSVVLDTRTGRVTVDGNPIK 149 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGF 207 + E R+L YLM + G+ V++T++ +Y FD + N +E + ++RK KLG Sbjct: 150 MTSHEYRLLAYLMHHAGRVVSRTELVEHLYDQDFDR--DSNTIEVFVGRIRK----KLGV 203 Query: 208 DPVDSKRFLGY 218 + + + R LGY Sbjct: 204 EIIQTVRGLGY 214 >gi|148658138|ref|YP_001278343.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148570248|gb|ABQ92393.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 229 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 74/152 (48%), Gaps = 20/152 (13%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 ++ R IR S VP+I ++ LQ + G DD + KP E+LARV A+ RR Sbjct: 61 DICRQIRRISDVPIIFVTGSGQLQDRVTGLQIGGDDYLVKPFEPAELLARVEAVLRRRNS 120 Query: 119 -LKVSNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 L R GP+ +F DGR L E R+L YLM N G+ ++ Sbjct: 121 DLVNPVTRISQGPLTLDPIEHTVLFEDGRS-------VVLTPIEFRLLYYLMQNTGRVLS 173 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +QI S ++G +D E N+V +I +LR K+ Sbjct: 174 ASQILSKVWG-YDYEGESNLVAVYIRRLRAKI 204 >gi|91199718|emb|CAI78073.1| putative two-component system regulator [Streptomyces ambofaciens ATCC 23877] gi|96771765|emb|CAI78347.1| putative two-component system regulator [Streptomyces ambofaciens ATCC 23877] gi|114049989|emb|CAK51006.1| putative two-component system regulator [Streptomyces ambofaciens] gi|114050211|emb|CAK51244.1| putative two-component system regulator [Streptomyces ambofaciens] gi|117164310|emb|CAJ87852.1| putative two-component system regulator [Streptomyces ambofaciens ATCC 23877] gi|126347422|emb|CAJ89130.1| putative two-component system regulator [Streptomyces ambofaciens ATCC 23877] Length = 253 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 6/144 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IRA S+VP++ ++ S + +G DD V KP RE++AR+ A+ RR Sbjct: 94 LEVCRAIRAVSRVPVVIVTARQSELDCVLGLQAGADDYVTKPYGLRELMARIEAVMRRAH 153 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G + + + R+ V G PL R+E +L L ++ + + Q+ + Sbjct: 154 WQPAARRYIRRGRLHIDVNSREVTVDGSGIPLTRKEFDLLCLLASHPDTVIPRKQLLKQV 213 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G ++ + V++H+S LR KL Sbjct: 214 WG---DSWSQRTVDTHVSSLRGKL 234 >gi|226946855|ref|YP_002801928.1| phosphate regulon response regulator PhoB [Azotobacter vinelandii DJ] gi|226721782|gb|ACO80953.1| phosphate regulon response regulator; PhoB [Azotobacter vinelandii DJ] Length = 229 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 18/210 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 +++DD A +++ IA+ + + G+ LE E Q+ A R D+ ++ L Sbjct: 6 ILIVDDEAPIRE-MIAV----ALEMAGYECLEAENTQQAHAIIVDRRPDLILLDWML--P 58 Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ + +PLI ++ + + G DD + KP RE++AR+ Sbjct: 59 GTSGIELARRLKRDELTTGIPLIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A+ RR +N E G +R+ + G+ + E R+L++ M ++ + + Sbjct: 119 AVLRRTAPGDNETPIEVGGLRLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRG 178 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q+ ++G + VEE V+ HI +LRK L Sbjct: 179 QLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207 >gi|311103838|ref|YP_003976691.1| response regulator 1 [Achromobacter xylosoxidans A8] gi|310758527|gb|ADP13976.1| response regulator 1 [Achromobacter xylosoxidans A8] Length = 223 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 13/139 (9%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A + P++ ++ ++ +D D G DD + KP RE+ AR+ A+ RR +T Sbjct: 69 AGLEAPVLVMTARSEIEDKIDMLDLGADDYLVKPFDLRELEARLRALMRR-----PAGQT 123 Query: 129 GPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + V+ + R+ V G L RRE R+LE L+ G+ VAK ++ + ++ L D Sbjct: 124 SSLTVYGNLSLDLANRNVSVAGAPLELGRREFRLLEILLGKLGQTVAKERLMNQLFDLDD 183 Query: 183 EAVEENVVESHISKLRKKL 201 + N +E IS+LRKKL Sbjct: 184 GTL--NALELLISRLRKKL 200 >gi|312113706|ref|YP_004011302.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311218835|gb|ADP70203.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 231 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 3/142 (2%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + P++ +S + + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRALRVSKIKTPILILSGSGGVDDKVRGLGFGADDYLTKPFHKDELVARIHAIVRRSK 120 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +TG + V D + EV G L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVIQTGSLIVNLDTKTVEVDGNRVHLTSKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 DE E +++ I KLRKKL Sbjct: 181 GIDEP-ELKIIDVFICKLRKKL 201 >gi|90414318|ref|ZP_01222297.1| Response regulator [Photobacterium profundum 3TCK] gi|90324656|gb|EAS41203.1| Response regulator [Photobacterium profundum 3TCK] Length = 218 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 6/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L R+ +A +P++ ++ + + D G DD + KP E+LAR+ + RR+ Sbjct: 63 LRRVRKAGHSLPILILTARDEIDDRVKGLDGGADDYLVKPFALEELLARLRVLIRRVSGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ + E G + + D QG L + E +IL L+ G+ ++K + ++G + Sbjct: 123 TDTQLEIGDLSISLKTNDVHYQGNPVKLTKNEFKILATLVTQSGRVLSKESLQQVLHG-W 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D+ +N +E HI LRKK+ +L + + R +GY I+ Sbjct: 182 DDLASDNAIEVHIHNLRKKIGGQL----IKNIRGVGYIIE 217 >gi|332297448|ref|YP_004439370.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] gi|332180551|gb|AEE16239.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] Length = 233 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 69/239 (28%), Positives = 108/239 (45%), Gaps = 40/239 (16%) Query: 1 MFVLIDDRALVKD---GYIALFGDDGVSLEGFNSLEFEEW---LQSSARE--DVSAIEAF 52 +L++D L+++ GY+ L+G ++EF+ L + RE D+ ++ Sbjct: 3 CIMLVEDNTLIREAVAGYL--------QLDGHKTVEFDTGAGVLDAVRREIADLIILDVM 54 Query: 53 LI-GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L G G L + IRA S VP+I ++ S + F+ G DD + KP +E++ R Sbjct: 55 LPDGNG---FALAKSIRAVSAVPIIFLTAKDSESDRILGFELGADDYICKPFSAKELVLR 111 Query: 112 VAAIYRRLKVSNNRAETGP------------IRVFSDGRDPEVQGEVFPLPRRERRILEY 159 V A+ RR S AET P + + + G L E +IL Y Sbjct: 112 VQALLRR---SGGSAETVPGASGEWQQGESRATLDTAKHTLAIDGIDVNLTGAEWKILVY 168 Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L N G+ V++ QI S + F E E V++HI+ LR KLG + + R GY Sbjct: 169 LAENSGQVVSREQILSECFNYFFEG-SERTVDTHIANLRA----KLGVGWIVTVRGFGY 222 >gi|332992484|gb|AEF02539.1| response regulator [Alteromonas sp. SN2] Length = 221 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 80/159 (50%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L I + + +P++ ++ + D+G DD + KP E+LAR+ + RRL S Sbjct: 63 LKSIRKTNPVLPVLILTARDKTSDKISGLDAGADDYLPKPFEIDELLARLRVLERRLGTS 122 Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + T + + + + ++ LPRRE +L+ L+ N G+ ++K Q+ S +Y + Sbjct: 123 SESVITVQNVSLDTKHHTLTIDSDIVHLPRRELMLLKALIENAGRILSKHQLESKLYE-W 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E V N +E HIS LRKK+ + + R +GY I Sbjct: 182 GEEVSSNTIEVHISNLRKKMPENF----IRTIRGVGYCI 216 >gi|167761520|ref|ZP_02433647.1| hypothetical protein CLOSCI_03931 [Clostridium scindens ATCC 35704] gi|167661186|gb|EDS05316.1| hypothetical protein CLOSCI_03931 [Clostridium scindens ATCC 35704] Length = 241 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 87/161 (54%), Gaps = 3/161 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE + +R S V LI ++ ++ +D+G DD + KP ++++V A+ RR++ Sbjct: 72 LEFGQSVRKVSDVYLIFLTALDQEVDIVNGYDAGADDYITKPFSLMVLISKVNALMRRIE 131 Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ N +G ++V+ + + L ++E ++L Y + + + ++K QI ++ Sbjct: 132 STHEEGNVLTSGSMQVWCKEMKVFQKEQELSLSKKEIQLLLYFLEHPKQIISKEQILESV 191 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + + V++N V IS+L+KKL + ++ + + R +GY Sbjct: 192 WDMDGQFVDDNTVPVTISRLKKKLATEEDYEYIKNIRGIGY 232 >gi|325681015|ref|ZP_08160547.1| transcriptional regulatory protein ResD [Ruminococcus albus 8] gi|324107244|gb|EGC01528.1| transcriptional regulatory protein ResD [Ruminococcus albus 8] Length = 233 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 21/199 (10%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRII 67 L KDGY + DG ++ FN+L + D+ ++ L G G +V R I Sbjct: 23 LEKDGYGVILAHDGEEAVVKFNAL----------KPDIILLDIMLPGIDGWQVC---REI 69 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R S VP+I I+ + + G DD + KP +E++AR+ A+YRR+ S+ +E Sbjct: 70 RKKSNVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRRVGQSSAESE 129 Query: 128 TGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ V + V G+V P +E +L +L +N + + Q+ ++G F+ Sbjct: 130 IKEVKYDKLSVNMTRYELRVDGKVLDTPPKELELLFHLASNPNRVYTRDQLLDEVWG-FE 188 Query: 183 EAVEENVVESHISKLRKKL 201 + ++ H+ +LR+KL Sbjct: 189 YYGDSRTIDVHVKRLREKL 207 >gi|258543034|ref|YP_003188467.1| two component response regulator [Acetobacter pasteurianus IFO 3283-01] gi|256634112|dbj|BAI00088.1| two component response regulator [Acetobacter pasteurianus IFO 3283-01] gi|256637172|dbj|BAI03141.1| two component response regulator [Acetobacter pasteurianus IFO 3283-03] gi|256640224|dbj|BAI06186.1| two component response regulator [Acetobacter pasteurianus IFO 3283-07] gi|256643281|dbj|BAI09236.1| two component response regulator [Acetobacter pasteurianus IFO 3283-22] gi|256646336|dbj|BAI12284.1| two component response regulator [Acetobacter pasteurianus IFO 3283-26] gi|256649389|dbj|BAI15330.1| two component response regulator [Acetobacter pasteurianus IFO 3283-32] gi|256652375|dbj|BAI18309.1| two component response regulator [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655433|dbj|BAI21360.1| two component response regulator [Acetobacter pasteurianus IFO 3283-12] Length = 225 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 91/192 (47%), Gaps = 16/192 (8%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L +S + DV ++ L G E + L + ++ P++ +S + + +G DD Sbjct: 39 LATSEKFDVIILDRMLPGGVEGLHILQTLRNQNNTTPVLLLSALADVDEKVAGLKAGGDD 98 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPL 149 V KP E+ AR+ A+ RR NR E P + G R+ + G+ L Sbjct: 99 YVTKPFSFSELQARLEALVRR-----NRNEAQPQTRLTIGDLEIDLLSRNVKRAGQKIEL 153 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 RE R+LE+LM + G+ V +T + ++ FD + NV++ HIS+LR+K+ Sbjct: 154 QPREFRLLEFLMRHAGQVVTRTMLLEGVWDYHFDP--QTNVIDVHISRLRQKIDRPFHHP 211 Query: 209 PVDSKRFLGYSI 220 V + R GY + Sbjct: 212 LVHTIRNAGYML 223 >gi|291087261|ref|ZP_06345880.2| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|313115944|ref|ZP_07801371.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|291075611|gb|EFE12975.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|310621708|gb|EFQ05236.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 236 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 3/153 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127 A Q+P++ I+ S F SG DD + KP++ E++ RV A+ RR ++ N ++ Sbjct: 83 AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G D E LP++E +L L A+ G+ K Q+ ++G EA + Sbjct: 143 IGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRIFTKQQLMDEVWGYETEA-DP 201 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +E HI ++R++L++ F+ V + R +GY + Sbjct: 202 HTIEVHIGRIRERLKDNPDFEIV-TMRGIGYKV 233 >gi|82701839|ref|YP_411405.1| two component transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82409904|gb|ABB74013.1| two component transcriptional regulator, winged helix family [Nitrosospira multiformis ATCC 25196] Length = 233 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 6/168 (3%) Query: 57 GEKVLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G + L R +R AH P++ ++ +L+ L FD G DD + KP +E+ AR+ A Sbjct: 62 GADGITLCRKLRQEAHLDTPVLMLTARDTLEDKLKGFDCGADDYLVKPFALKEVEARLVA 121 Query: 115 IYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 +++R KV++ ET + G LP + +L +M+ G+ ++ + Sbjct: 122 MHKRRKGKVTSRTLETEDLSFDPKTLTIRFAGANVKLPPKCIGLLAVIMSEPGRVFSRRE 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + S ++G E + + SH+ +LR+ L G+DP+++ LGY + Sbjct: 182 LESEVWGDVQET--SDTLRSHMHELRRALTRAGGYDPIETVHGLGYRL 227 >gi|77361690|ref|YP_341265.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Pseudoalteromonas haloplanktis TAC125] gi|76876601|emb|CAI87823.1| putative response regulator in two-component regulatory system with CusS, regulation of copper resistance [Pseudoalteromonas haloplanktis TAC125] Length = 224 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 7/165 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +L+ R S+V ++ P Q ++ G DD + KP E+ ARV A+ Sbjct: 59 GMSILQALRSSNNQSRVLILSARSEP--QDKINGLMKGADDYLTKPFSFEELHARVLALL 116 Query: 117 RRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + N N G + + Q L R E +I+E L N +RV ++ Sbjct: 117 RRGSLQNQQNTLTVGDCVLDLSLKTLHYQQHAIELTRNEYKIIECLF-NAPERVLGLELI 175 Query: 175 S-AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 S A+ G FD + +N +E+HIS +RKK+R G P+ +KR GY Sbjct: 176 SEAVVGQFD-MLSKNALEAHISTIRKKVRQFDGELPIKNKRGFGY 219 >gi|150018489|ref|YP_001310743.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904954|gb|ABR35787.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 226 Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 5/146 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ R +R+ S +P+I +S + T +D G DD V KP EILARV + RR Sbjct: 63 EILRELRSFSNIPVIVLSAKDMVHTKVDLLRLGADDYVTKPFDLNEILARVESNLRRCSS 122 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 L + + I ++ + + V G L +E IL L+++ K +K +F +I Sbjct: 123 DLNIKKSILTYKDITLYEEEKKVIVNGNTLVLTSKEYGILFLLLSHPQKVFSKANLFESI 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN 203 + + E+N + HIS +R KL++ Sbjct: 183 WN-EEYFSEDNTLNVHISNIRNKLKS 207 >gi|213963214|ref|ZP_03391471.1| two-component system response regulator [Capnocytophaga sputigena Capno] gi|213954076|gb|EEB65401.1| two-component system response regulator [Capnocytophaga sputigena Capno] Length = 223 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G ++L+ + ++ + V +I D S++ + + G DD + KP H E+LARV + Sbjct: 57 GSGMQLLDELKAMKKNHSVLIISAKD--SVEDKVLGLEKGADDYLAKPFHLAELLARVKS 114 Query: 115 IYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 I RR N + E +R+F + R +V E L R+E +L Y M K V K Sbjct: 115 IIRR---KNQQGEEVITLKNVRLFPETRTVKVGEETLSLNRKEYDLLYYFMIRPDKLVEK 171 Query: 171 TQIFSAIYGLFDEAVEE-NVVESHISKLRKKLRN 203 + A++G + + V+ + + S I LRKKL+ Sbjct: 172 MTLAEAVWGDYIDQVDSLDFIYSQIKNLRKKLKT 205 >gi|89897369|ref|YP_520856.1| hypothetical protein DSY4623 [Desulfitobacterium hafniense Y51] gi|89336817|dbj|BAE86412.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 227 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 83/163 (50%), Gaps = 5/163 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 +++R +++P+I ++ + FD G DD V KP RE+ ARV A+ RRL+ Sbjct: 64 KVLRKETKIPIIMLTAKGEENDRVLGFDLGADDYVVKPFSPRELSARVKAVLRRLEGEPT 123 Query: 125 RAE--TGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + T P + R+ V V L +E +L L N + + Q+ + ++ + Sbjct: 124 KEHLITYPGFTINQITREVVVDETVVKLTAKEFDLLLVLAKNPSRIFTRDQLLNTVWE-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223 D + V++HI++LR KL +++G D + + R +GY +W+ Sbjct: 183 DYCGDSRTVDTHINRLRSKLESQVGLSDFIQTVRGVGYKFEWS 225 >gi|312867634|ref|ZP_07727840.1| putative response regulator ArlR [Streptococcus parasanguinis F0405] gi|311096697|gb|EFQ54935.1| putative response regulator ArlR [Streptococcus parasanguinis F0405] Length = 226 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R KV+ N G + Sbjct: 73 TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKVNENTLNYGNL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 +V V + L +E +L Y + N+ + KTQIF ++G FD +VVE Sbjct: 133 KVNLSTNSTYVDDKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + + R +GY Sbjct: 192 VYVSKIRKKLKGTDFVESLQTLRSVGY 218 >gi|224477348|ref|YP_002634954.1| hypothetical protein Sca_1863 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421955|emb|CAL28769.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 224 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 102/197 (51%), Gaps = 7/197 (3%) Query: 27 EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF ++ + E+ L+ ++ V ++ G EL + I+ + +P+I ++ + Sbjct: 24 EGFKTVTYSNAEDALKYLDKQHVDIAIIDIMMNGMDGFELCQEIKDNYTLPVIMLTARDA 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEV 142 L + + +G DD V KP +E++ R+ A+ RR ++ + N E G +++ + Sbjct: 84 LSDKEEAYLTGTDDYVTKPFEVQELIFRIKAVLRRYQINAENELEIGNLKLNQSYLEIST 143 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + LP +E +L L+++ + ++ + ++G FD ++ V+ HI +LR +L Sbjct: 144 ANKTMTLPNKEFHLLFLLVSHPKQIFSREECIERVWG-FDYDGDDRTVDVHIRRLRNRL- 201 Query: 203 NKLGFD-PVDSKRFLGY 218 NK+G + +++ R LGY Sbjct: 202 NKIGSNISIETVRGLGY 218 >gi|90419331|ref|ZP_01227241.1| transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90336268|gb|EAS50009.1| transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 221 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 28/212 (13%) Query: 23 GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI------GKGEKVLELPRIIRAHSQVPLI 76 G+ + GF S + + A V +A ++ G G +L R + P++ Sbjct: 19 GLGMSGFTSDLTDCCRDAEAALAVGGFDAVVLDVMLPDGSGHDILAAMR--QRGDTTPVL 76 Query: 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAET 128 ++ +L + D G DD + KP E+ AR+ A+ RR L+ R + Sbjct: 77 LLTALDALPDRIRGLDGGADDHLGKPFALDEVAARLRALIRRGTTRAEPFLEWEGVRVDP 136 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 + DG D L RRE +L L+ + G ++++Q+ +YG FDE VE N Sbjct: 137 AAMVATQDGVD-------IRLSRREFAVLHALIQHPGAILSRSQLEDKLYG-FDEGVESN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 VE H+ KLR K ++ +++ R +GY + Sbjct: 189 AVEVHVHKLRAKFGSRF----IETLRGVGYRL 216 >gi|83591942|ref|YP_425694.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83574856|gb|ABC21407.1| two component transcriptional regulator, winged helix family [Rhodospirillum rubrum ATCC 11170] Length = 233 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 3/135 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ--GEVFP 148 ++G DD ++KP E+LARV A+ RR + ++ + V D V G Sbjct: 95 LNTGADDYMSKPFSMPELLARVKALLRRAQPTSAKGTLSYSDVVMDLGAHRVTRGGRYIH 154 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L E R+L++LM N G ++ ++ +A++G D VE V+ HI +LRK L + D Sbjct: 155 LGPTEFRLLQFLMQNPGAVFSREELLNAVWG-PDIYVEPRTVDVHIRRLRKALNGEASTD 213 Query: 209 PVDSKRFLGYSIDWN 223 + + R GY++D N Sbjct: 214 LIRTVRAAGYALDTN 228 >gi|209547341|ref|YP_002279259.1| two component winged helix family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538585|gb|ACI58519.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 222 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 10/160 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ ++ +++P+I ++ SL + DSG DD + KP E+ AR+ A+ RR Sbjct: 63 LKRLRQSGNKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRR---G 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +RA + G +R R V E+ L RE +LE L+ G V+K + +++ Sbjct: 120 QDRASSEITVGNLRFSGGTRQFFVADELLQLTPREYAVLEQLVMKVGNTVSKAALSESVF 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G FD+ + + +E ++ +LRKKL + + + R LGY Sbjct: 180 G-FDDEADPSAIEIYVHRLRKKLESS--SVQIATLRGLGY 216 >gi|167762544|ref|ZP_02434671.1| hypothetical protein BACSTE_00900 [Bacteroides stercoris ATCC 43183] gi|167699650|gb|EDS16229.1| hypothetical protein BACSTE_00900 [Bacteroides stercoris ATCC 43183] Length = 225 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 4/150 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G +L + +R V +I D SL +D + G DD + KP H E+ AR+ + Sbjct: 57 GSGLDLLRELKHLRRTDSVLIISAKD--SLDDKVDGLELGADDYLTKPFHLAELNARIKS 114 Query: 115 IYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR + + + T G + ++ D R EV G L R+E +L Y + N + + K + Sbjct: 115 LIRRRQAQGDMSVTVGNLLLYPDKRQAEVGGAPLQLNRKEFDLLYYFVVNANRVINKMSL 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLR 202 +++G D+A + + S + LRKKL+ Sbjct: 175 AESVWGDNIDQADSLDFIYSQVKNLRKKLK 204 >gi|71907213|ref|YP_284800.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] gi|71846834|gb|AAZ46330.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] Length = 223 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 21/209 (10%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV----LELPRIIRAH---------SQV 73 +G L + + SA E EAF +G+ + + LP+ H +++ Sbjct: 18 QGLQQLGYTVDVARSAEE----AEAFAVGEDFDITLVDIGLPKADGLHFIRQLRTRGNRL 73 Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132 P + ++ S+ T+ D+G DD + KP E+ AR+ A+ RR V + IR Sbjct: 74 PALILTARDSMDDTIKGLDAGADDYMTKPYRLPEVAARIRALIRRSNAVVDACLHHDGIR 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + + + GE L RE ILE L+ V+K ++ + G +D+ + N +E Sbjct: 134 MDTRSHTATLNGEPLDLTNREWAILEMLLMASPAVVSKDKLVQGLAG-WDKDITPNAIEV 192 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221 H+S+LR+KL G + + R +GY +D Sbjct: 193 HVSRLRQKLTT--GTIVIRTVRGIGYRVD 219 >gi|116662230|ref|YP_829285.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116612982|gb|ABK05704.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 227 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 65/217 (29%), Positives = 97/217 (44%), Gaps = 18/217 (8%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRI 66 R LV +G++ DGVS G W + DV ++ L + G VL+ R Sbjct: 18 RGLVNEGFVVDVTHDGVS--GL-------WAATENPYDVILLDLMLPLKNGYDVLKELRE 68 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 + V ++ D QT D FD G DD + KP ++AR+ A+ RR Sbjct: 69 RLVWTPVLMLTAKDGEYDQT--DAFDLGADDYLTKPFSFIVLVARIRALIRRGAPERPVT 126 Query: 127 ET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 T G + + R V L RE +L YLM + G+ V+K QI ++ D A Sbjct: 127 LTVGSLTLDPGSRSVRRGDTVIELTAREYGLLHYLMRSHGQVVSKAQILDNVW---DPAF 183 Query: 186 E--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E +NVVE +I LR+K+ G + + R +GY + Sbjct: 184 EGGDNVVEVYIGYLRRKIDVPFGLQTLATVRGMGYML 220 >gi|289550823|ref|YP_003471727.1| Putative response regulator ArlR [Staphylococcus lugdunensis HKU09-01] gi|315658319|ref|ZP_07911191.1| response regulator [Staphylococcus lugdunensis M23590] gi|289180355|gb|ADC87600.1| Putative response regulator ArlR [Staphylococcus lugdunensis HKU09-01] gi|315496648|gb|EFU84971.1| response regulator [Staphylococcus lugdunensis M23590] Length = 219 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 2/160 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR P+I I+ + D G DD + KP E+ AR+ AI RR + Sbjct: 61 LEICRRIRQQYTTPIIIITAKSETMDKVTGLDYGADDYIVKPFEIEELFARIRAILRR-Q 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + I + + + V G L + E +L L NR + + QI ++G Sbjct: 120 PQKDVIDINGIIIDKNAFEVTVDGTQLDLTKTEYDLLYVLAENRNHVLQREQILDHVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 179 YDSEVETNVVDVYIRYLRNKLKPFNKERTIETVRGVGYVI 218 >gi|323489407|ref|ZP_08094636.1| YxdJ [Planococcus donghaensis MPA1U2] gi|323396901|gb|EGA89718.1| YxdJ [Planococcus donghaensis MPA1U2] Length = 234 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 83/163 (50%), Gaps = 9/163 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R +R + P+I IS + ++G DD + KP H+ +LA++ + RR Sbjct: 67 RQLRQQTTCPIIFISARSGEMDQVFALENGGDDFITKPFHYEIVLAKIRSHLRRAYGEYA 126 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K G I ++ + + ++ EV PL ++E ILE L+ + K V++ Q+ ++ Sbjct: 127 PKQEERSVRAGRIVLYMERMELHIKKEVIPLQKKECTILELLLTHYPKVVSREQLLEELW 186 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D+A V+EN + +++++RKKL + +++ R GY + Sbjct: 187 D--DQAFVDENTLNVNMTRVRKKLSDYGVLSAIETVRGAGYRL 227 >gi|293603268|ref|ZP_06685698.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] gi|292818329|gb|EFF77380.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] Length = 223 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 73/134 (54%), Gaps = 3/134 (2%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127 A + P++ ++ ++ +D D G DD + KP RE+ AR+ A+ RR +++ Sbjct: 69 AGLEAPVLVMTARAEIEDKIDMLDLGADDYLVKPFDLRELEARLRALMRRPAGQTSSTTS 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + + GR + G L RRE R+LE L+ G+ VAK ++ + ++ L D ++ Sbjct: 129 YGNLSLDLAGRSVTLAGAPVELGRREFRLLEILVGRIGQTVAKERLMNQLFDLDDGSL-- 186 Query: 188 NVVESHISKLRKKL 201 N +E IS+LRKKL Sbjct: 187 NALELLISRLRKKL 200 >gi|157377007|ref|YP_001475607.1| two component transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157319381|gb|ABV38479.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 224 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 9/150 (6%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130 P+I ++ ++ F++G DD + KP H +E+LAR+ A+ +R K S E Sbjct: 73 TPVIMLTARSQWHEKVEGFNAGADDYLGKPFHTQELLARIHALIQRAHGKASLPSKELSF 132 Query: 131 IRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 V D V +F L E R+L+ + + K ++K+Q+ +Y FD+ E N Sbjct: 133 SGVTLDENQQSVMVGSNLFELTAMEFRLLKIFLMSPQKLLSKSQLTDKLYQ-FDDEKESN 191 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VVE +++ LRK KLG ++++R GY Sbjct: 192 VVEVYVTHLRK----KLGKTAIETRRGQGY 217 >gi|187918761|ref|YP_001887792.1| two component winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717199|gb|ACD18422.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 225 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + P++ ++ S+ ++ +G DD + KP RE++AR+ RR S Sbjct: 63 LRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQSPS 122 Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + D R ++G + RER +LE L+ GK V K + AI+ L Sbjct: 123 KASEVVCGDLTFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFTLA 182 Query: 182 DEAVEENVVESHISKLRKKL 201 DE E+ VE +IS+LRKKL Sbjct: 183 DEP-SEDAVEIYISRLRKKL 201 >gi|109947684|ref|YP_664912.1| two-component system regulatory protein [Helicobacter acinonychis str. Sheeba] gi|109714905|emb|CAJ99913.1| two-component system regulatory protein [Helicobacter acinonychis str. Sheeba] Length = 223 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 23/208 (11%) Query: 19 FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGI 78 D G + S+E E+L D+ + ++ + + R+ H + ++ Sbjct: 20 LNDKGFMADVTESVEDGEYLM-----DIRNYDLVMVSDKNAINLVSRVKDKHPSIIVLVS 74 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSD- 136 S P+ Q + F+ G DD + KP +R I A VA I RL+ +N E G + + D Sbjct: 75 SSNPTSQEEVHAFEQGADDYIAKP--YRSIKALVARIEARLRFWGSNVIEIGDLTISPDE 132 Query: 137 ------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 GR+ EV+G+ F +L +L +R + V+K Q+ AI+ E V NV+ Sbjct: 133 EKIIYKGREIEVKGKPF-------EVLTHLARHRDQIVSKEQLLDAIWE-EPEMVTPNVI 184 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E I+++R+K+ LG V++ R GY Sbjct: 185 EVAINQIRQKMDKPLGISTVETIRRRGY 212 >gi|89100385|ref|ZP_01173249.1| PhoP [Bacillus sp. NRRL B-14911] gi|89084904|gb|EAR64041.1| PhoP [Bacillus sp. NRRL B-14911] Length = 237 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 74/139 (53%), Gaps = 12/139 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----------GPIRVFSDGRDPEVQ 143 G DD + KP RE++ARV AI RR +++ + E G +++F + + Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRTQLTAGQQEQAEEDSDSIRIGGLKIFPEHYEAFFS 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202 E+ L +E +L YL N+G+ + + Q+ SA++ +D A + +V+ H+S LR+K+ Sbjct: 156 EELLELTPKEFELLLYLAQNKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHVSHLREKIEE 214 Query: 203 NKLGFDPVDSKRFLGYSID 221 N + + R LGY ++ Sbjct: 215 NTKKPAYIKTIRGLGYKLE 233 >gi|302535686|ref|ZP_07288028.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444581|gb|EFL16397.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 255 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 7/164 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ R QVP++ ++ S++ + +G DD V KP E++AR+ + RR + Sbjct: 89 LGRLRREIPQVPVLFLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRSGAA 148 Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G +R+ D + G+ L E +L YLM N + ++K QI + Sbjct: 149 QAARGGSVLTVGDLRLDEDSHEVVRGGQEVHLTATEFELLRYLMRNPRRVLSKAQILDRV 208 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + +D + NVVE +IS LR+KL G P + ++R GY I Sbjct: 209 WS-YDFGGQANVVELYISYLRRKLEGGTGLPPMIHTRRGAGYLI 251 >gi|156740840|ref|YP_001430969.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232168|gb|ABU56951.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 226 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 29/177 (16%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 ++ R IR S VP+I +S LQ + G DD + KP E+LARV A+ RR Sbjct: 61 DVCRQIRRTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRRRNS 120 Query: 119 ------LKVSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 ++S+ P+ +F+DGR E+ PL E R+L YLM N G+ + Sbjct: 121 DMLNPSARLSHGDITLDPVEHKVLFADGRIVELT----PL---EFRLLYYLMKNSGRVLN 173 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221 +QI + ++G +D E N+V +I ++LR K+ DP V + R LGY + Sbjct: 174 TSQILNKVWG-YDCEGESNLVAVYI----RRLRTKIERDPEHPRHVLTVRNLGYKFE 225 >gi|160880986|ref|YP_001559954.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160429652|gb|ABX43215.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 224 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 79/144 (54%), Gaps = 2/144 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 ++ + IR +S+VP+I ++ + L F+ GVD+ ++KP + ++ARV AI RR ++ Sbjct: 65 QVCKEIRKYSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRRSIQ 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E G I + + ++ L +E +L Y + NRG +++ +I + ++ Sbjct: 125 TLDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREKILNNVWN- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR K+ +K Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGDK 207 >gi|329767923|ref|ZP_08259435.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341] gi|328838586|gb|EGF88189.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341] Length = 221 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 2/157 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 + R+ + + P+I ++ +L+ + DSG DD + KP E+LAR+ + RR + Sbjct: 63 IARLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRRNYGL 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + N + + + + G+ L +E +LEYLM N+ +++ QI + ++ + Sbjct: 123 ATNVIQVDDVVLDISKKQVLRNGQNIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D N+V+ I +RKKL N + +KR LGY Sbjct: 182 DYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGY 218 >gi|319935317|ref|ZP_08009755.1| hypothetical protein HMPREF9488_00586 [Coprobacillus sp. 29_1] gi|319809725|gb|EFW06126.1| hypothetical protein HMPREF9488_00586 [Coprobacillus sp. 29_1] Length = 228 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 86/161 (53%), Gaps = 1/161 (0%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +EL IR SQ+P++ ++ + + + +SG DD + KP +E+ AR+ A+ RR + Sbjct: 61 IELCEYIRKQSQLPILFLTANDNEEMLVKGLNSGGDDYMTKPFRIKELYARLQALLRRSQ 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ G +++ R+ ++ + L + IL+ LM ++ + + ++Q+ AI Sbjct: 121 SLQDKMIVGNLQIDLQRREVFIEKQEVHLSTIDFDILKMLMIHKNQVLTRSQLLEAI-DQ 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + VE+N + H+ +LR KL G +++ R +GY ++ Sbjct: 180 ENNFVEDNTLSVHVKRLRDKLGIYHGHSYIETVRGIGYRLN 220 >gi|291453069|ref|ZP_06592459.1| two-component system response regulator [Streptomyces albus J1074] gi|291356018|gb|EFE82920.1| two-component system response regulator [Streptomyces albus J1074] Length = 223 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 59 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 119 PEEAVPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 179 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 206 >gi|157267313|gb|ABV26370.1| RppA [Proteus mirabilis] Length = 221 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 82/158 (51%), Gaps = 6/158 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 EL + ++ ++P+I ++ + + DSG DD + KP E+++RV A+ RR+ Sbjct: 62 ELIALRKSGEKIPIIILTARTQIDNLVQTLDSGADDFLPKPFAMPELISRVKAVSRRMAG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S+ G +++ + GE+ L +E ++L LM N V K+ + ++GL Sbjct: 122 FSSQIWSIGDLQLNPSNHQVTLNGELLLLSGKEYQLLYELMRNTDNVVRKSDLEQRLFGL 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D+ +E N +E H+ LR+ K+G + + + R +GY Sbjct: 182 -DDKIESNSLEVHMHNLRR----KIGKERIITVRGIGY 214 >gi|322516470|ref|ZP_08069390.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322125016|gb|EFX96425.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 217 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP++ ++ + L F D + KP + R+ AI+++L+ Sbjct: 60 LEVLKTIRKTSSVPVLMLTAFHDEDYKLTAFGELADGYLEKPFSLSLLRVRIEAIFKKLQ 119 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S R T G +RV + + G+ + +E ILEYL+ + GK ++QI A++ Sbjct: 120 PS--RVFTYGDVRVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWK 177 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL D + + R +GY ++ Sbjct: 178 ETEEIPFDRVIDVYIKELRKKLE----LDCIVTVRNVGYKLE 215 >gi|312862894|ref|ZP_07723134.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus vestibularis F0396] gi|311101754|gb|EFQ59957.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus vestibularis F0396] Length = 219 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 5/164 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L+ IR P++ I+ + G DD + KP +E+ ARVAA RR Sbjct: 60 LQFCHEIRNQVDCPILFITAKTQEADIVQGLTYGADDYICKPFGVKELQARVAAHLRREH 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +++ G + ++ V+ ++ L + E I ++L N+G+ +K QI++ +YG Sbjct: 120 RERHHKLSLGDFQFDLSAQELYVENQLLDLTKSEYGICQFLAENKGQVFSKEQIYTHLYG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D+ V E HI +R KL++ +G +P+++ +GY W+ Sbjct: 180 YEDKGSPTAVAE-HIKNIRAKLKD-VGQNPIETVWGIGYK--WH 219 >gi|330821031|ref|YP_004349893.1| two component transcriptional regulator [Burkholderia gladioli BSR3] gi|327373026|gb|AEA64381.1| two component transcriptional regulator [Burkholderia gladioli BSR3] Length = 219 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 7/167 (4%) Query: 57 GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ L R++RA +P++ I+ ++ + D G DD + KP E+LAR A+ Sbjct: 56 GKSGSALLRMLRARGDTIPVLVITARGTVADRVRGLDEGADDYLAKPFDLSEVLARCRAL 115 Query: 116 YRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + A G I + R L RE IL L+ RG ++ ++ Sbjct: 116 VRRSQGRTRDAFVRGDIAIDLTSRVITRNASRIALTAREWAILIQLVGQRGVPQSRARLE 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A+YG + + VE N +E H+S LRK KLG D + + R +GY ++ Sbjct: 176 DALYG-WQDGVESNAIEVHVSNLRK----KLGADFIRTVRGIGYVVE 217 >gi|319934759|ref|ZP_08009204.1| hypothetical protein HMPREF9488_00035 [Coprobacillus sp. 29_1] gi|319810136|gb|EFW06498.1| hypothetical protein HMPREF9488_00035 [Coprobacillus sp. 29_1] Length = 226 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 6/149 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQ P++ +S + L F G DD ++KP + A+ AI +R + Sbjct: 62 EVCYQIRQSSQCPIVFMSALSEEENQLKAFQYGGDDYISKPFLPSVLYAKCLAICKRQQ- 120 Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N ++ET G + + ++ E L +E +LEYL N + +++ QI A++ Sbjct: 121 -NTQSETKNFGKLNIDYLNHQVWLENEELSLTHKEYLLLEYLTKNAYQLLSREQILDALW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF 207 G +D + V+++I K+RKKL G+ Sbjct: 180 G-YDYYGDARAVDTYIKKVRKKLGKYQGY 207 >gi|311740982|ref|ZP_07714807.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311303784|gb|EFQ79862.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 235 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 95/209 (45%), Gaps = 27/209 (12%) Query: 10 LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+G+ + DG +LE F A D+ + L+ G E+ + +R Sbjct: 21 LRKEGFEPIIAHDGPTALEKF------------AANDIDIVLLDLMLPGMSGTEVCKQLR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 S VP+I ++ S + + G DD V KP RE++AR+ A+ RR S A+T Sbjct: 69 TTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHDSGAGADT 128 Query: 129 -------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 G +++ + V GE +P +E +LEYL+ N G+ + + Q+ Sbjct: 129 EAEEEVTEQLLEGGRVKMDVERHTVTVAGEPVSMPLKEFDLLEYLLRNAGRVLTRGQLID 188 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK 204 I+G D + ++ H+ +LR K+ + Sbjct: 189 RIWG-ADYVGDTKTLDVHVKRLRSKIEEQ 216 >gi|218291334|ref|ZP_03495294.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|258512228|ref|YP_003185662.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218238780|gb|EED05994.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|257478954|gb|ACV59273.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 231 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 77/144 (53%), Gaps = 4/144 (2%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +R A Q P++ ++ +++ + D+G DD + KP ++E+LARV A+ RR Sbjct: 60 LDILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRT 119 Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E GP R+ + R GE L +E ++LE M N K ++K I + Sbjct: 120 GQIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRV 179 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G D V N VE+++ LRKK+ Sbjct: 180 WG-PDADVIGNAVENYVHFLRKKI 202 >gi|254423150|ref|ZP_05036868.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190639|gb|EDX85603.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 236 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 24/223 (10%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L + G++ + D G + +E+ +Q+ DV ++ + GK + + L + + Sbjct: 19 GLKEQGFVVEYCDHG-------DIAYEKAIQNEY--DVILLDIMMPGK-DGLFILKNLRQ 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127 P+I ++ L L + G DD + KP E++AR+ A+ RR N Sbjct: 69 VGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSAGEQPNLVT 128 Query: 128 TGPIRVFSDGRDPEVQGE------------VFPLPRRERRILEYLMANRGKRVAKTQIFS 175 GP ++ R Q E V L RE +LEYLM + G+ +TQ+ Sbjct: 129 VGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGRVFTRTQMLE 188 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G +D NVV+ I +LRKK+ K ++S R +GY Sbjct: 189 HVWG-YDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGY 230 >gi|197285555|ref|YP_002151427.1| swarming motility regulation two-component system, response regulator [Proteus mirabilis HI4320] gi|227356052|ref|ZP_03840443.1| swarming motility regulation two-component system, response regulator [Proteus mirabilis ATCC 29906] gi|194683042|emb|CAR43534.1| swarming motility regulation two-component system, response regulator [Proteus mirabilis HI4320] gi|227163829|gb|EEI48737.1| swarming motility regulation two-component system, response regulator [Proteus mirabilis ATCC 29906] Length = 221 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 82/158 (51%), Gaps = 6/158 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 EL + ++ ++P+I ++ + + DSG DD + KP E+++RV A+ RR+ Sbjct: 62 ELIALRKSGEKIPIIILTARTQIDNLVQTLDSGADDFLPKPFAMPELISRVKAVSRRMAG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S+ G +++ + GE+ L +E ++L LM N V K+ + ++GL Sbjct: 122 FSSQIWSIGDLQLNPSNHQVTLNGELLLLSGKEYQLLYELMRNTDNVVRKSDLEQRLFGL 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D+ +E N +E H+ LR+ K+G + + + R +GY Sbjct: 182 -DDKIESNSLEVHMHNLRR----KIGKERIITVRGIGY 214 >gi|170783570|ref|YP_001740087.1| CheY-like response regulator [Arthrobacter sp. Chr15] gi|150035078|gb|ABR67074.1| CheY-like response regulator [Arthrobacter sp. Chr15] Length = 247 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 86/162 (53%), Gaps = 5/162 (3%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R +R +VP++ ++ ++ + DSG DD + KP H E+LAR+ A+ RR Sbjct: 77 ELCRRLRERGIEVPVLMLTARDAVDDRVRGLDSGADDYLAKPFHLEELLARLRALTRRGP 136 Query: 121 VSNNRA-ETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + R G +R+ S+G R + EV L +E +LE+ M G+ + + + + Sbjct: 137 LVSARGLVAGNLRLDSEGMRCWRGEAEV-NLTAKEHALLEFFMEQPGRVLTREVLLENCW 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 L EA NVV+ H+ LR+K+ + G +++ R +GY + Sbjct: 196 DLAFEA-NSNVVDVHVRALREKIDRRFGVRSIETVRGVGYRL 236 >gi|296159315|ref|ZP_06842141.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295890574|gb|EFG70366.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 219 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 6/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L R+ + VP++ ++ ++ + ++G DD + KP E++AR A+ RR + Sbjct: 63 LKRLRDSGKDVPVLVLTARSTVLDRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQGR 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + + V + EV PL RE IL L+ N+G +++++ ++YG + Sbjct: 123 SVEQIRYLDLTVNPAAQTVEVGTRRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG-W 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E +E N +E H+S LRKKL KL + + R +GY ++ Sbjct: 182 QEEIESNAIEVHVSNLRKKLGAKL----IKTVRNIGYVME 217 >gi|187779154|ref|ZP_02995627.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC 15579] gi|187772779|gb|EDU36581.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC 15579] Length = 230 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR S +P+I ++ + D+G DD + KP E+LAR+ +R K Sbjct: 66 MEVCRRIRQISDIPIIMLTAKDETTDIVMGLDTGADDYITKPFAIEELLARIRVALKRKK 125 Query: 121 VSNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + T I+ D + ++ L + E +L++ M N+ + + QI + + Sbjct: 126 LEIEHSNTISIKGLELDLDKHIVSYNQQIIDLTKTEFDLLKFFMENKNIALNRDQILNKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +G FD + NVV+ ++ LR K+ NK + + R +GY Sbjct: 186 WG-FDYLGDTNVVDVYVRYLRTKIDNKYNERFIYTIRGVGY 225 >gi|329897279|ref|ZP_08272017.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium IMCC3088] gi|328921275|gb|EGG28671.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium IMCC3088] Length = 233 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 3/154 (1%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G ++L + + ++P+I ++ S + D G DD + KP RE++AR+ A Sbjct: 60 GSGIELLRRLKRDKLTEEIPVIMLTAKTSEDNVIQGLDVGADDYITKPFAPRELIARIRA 119 Query: 115 IYRRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + RR S+ R E G + + + GE + E ++L + M++ + ++Q Sbjct: 120 LLRRSGAMPSSERIEAGELVLDMSSHRVFLAGEPLAMGPTEFKLLSFFMSHPERAYTRSQ 179 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 + ++G + VEE V+ HI +LRK L+N +G Sbjct: 180 LLDQVWG-GNVYVEERTVDVHIRRLRKALQNDMG 212 >gi|329769101|ref|ZP_08260522.1| hypothetical protein HMPREF0433_00286 [Gemella sanguinis M325] gi|328839447|gb|EGF89024.1| hypothetical protein HMPREF0433_00286 [Gemella sanguinis M325] Length = 225 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 2/175 (1%) Query: 48 AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE 107 AI ++ K + V + ++ P++ ++ ++ + DSG DD + KP +E Sbjct: 48 AILDVMMPKMDGVTVVQKLRENKKSTPVLLLTAKSEIEDKVYGLDSGADDYLTKPFVIKE 107 Query: 108 ILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 +LARV ++ RR ++N E G + + + + + L +E +++E LM N G Sbjct: 108 LLARVRSMTRRQTTFTSNVLELGNVSLSKYTFELSTEKDKVRLSNKEYQMMEMLMRNPGN 167 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + Q I+G +D E NVV +IS LRKKL+ + + R +GY+++ Sbjct: 168 VIQTEQFLERIWG-YDSDSEINVVWVNISYLRKKLKALDANVQIKATRNVGYTLE 221 >gi|326201109|ref|ZP_08190981.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325988677|gb|EGD49501.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 226 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 8/163 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R IR +S+VP+I ++ + L F G D+ + KP +LARV A+ +RL + Sbjct: 66 EALRSIRQYSKVPVIMLTAKCTEADELLSFGIGADEYITKPFSLMILLARVQALLKRLNI 125 Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI--Y 178 + N + + + V G+ L +E +L YL N G +++ +I +++ Y Sbjct: 126 NINGKKSFDGLEIDLPAHTVHVSGQEIELTPKEFELLLYLCDNDGIALSREKILNSVWDY 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G F + V++HI KLR KL K F + + R LGY + Sbjct: 186 GYFGDV---RTVDTHIKKLRLKLGEKGDF--IQTIRGLGYKFE 223 >gi|320333199|ref|YP_004169910.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754488|gb|ADV66245.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 225 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 82/165 (49%), Gaps = 11/165 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S P+I ++ ++Q ++ DSG DD + KP E+LARV A RR+ Sbjct: 64 LEVARRIRKTSNTPIIILTAKDNIQDKVEGLDSGADDYLVKPFSIEELLARVRAHLRRV- 122 Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N A TG +RV DGR+ G L +E +LE L N GK ++ +I Sbjct: 123 ---NPAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + NVV+ +I LR+KL + + R +GY + Sbjct: 180 KVWPEYTGG--SNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 222 >gi|291460016|ref|ZP_06599406.1| DNA-binding response regulator DltR [Oribacterium sp. oral taxon 078 str. F0262] gi|291417357|gb|EFE91076.1| DNA-binding response regulator DltR [Oribacterium sp. oral taxon 078 str. F0262] Length = 226 Score = 65.1 bits (157), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 4/167 (2%) Query: 57 GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G + L R +R +P++ ++ L ++ ++G D + KP RE++A V A+ Sbjct: 56 GMNGIALARQLRKERCGMPILMLTARSELLDRVEGLNAGADYYLTKPFDERELMACVNAL 115 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR N+ G + D L RE ++ LM +GK + K QI S Sbjct: 116 LRRQGAEVNQLSFGNTSLDLDSGTLLCGERELRLSAREFDVMRLLMQAKGKNLRKEQILS 175 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 ++G FD EN VE ++ LRKKL++ +G D + S R LGY ++ Sbjct: 176 RVWG-FDSEATENHVEVYVGFLRKKLKS-IGSDLSIVSVRRLGYHLE 220 >gi|312863869|ref|ZP_07724107.1| putative sensory transduction protein RegX3 [Streptococcus vestibularis F0396] gi|311101405|gb|EFQ59610.1| putative sensory transduction protein RegX3 [Streptococcus vestibularis F0396] Length = 217 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP++ ++ + L F D + KP + R+ AI+++L+ Sbjct: 60 LEVLKTIRKTSSVPVLMLTAFHDEDYKLTAFGELADGYLEKPFSLSLLRVRIEAIFKKLQ 119 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S R T G +RV + + G+ + +E ILEYL+ + GK ++QI A++ Sbjct: 120 PS--RVFTYGDVRVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWK 177 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL D + + R +GY ++ Sbjct: 178 ETEEIPFDRVIDVYIKELRKKLE----LDCIVTVRNVGYKLE 215 >gi|294498881|ref|YP_003562581.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294348818|gb|ADE69147.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 224 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 5/160 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + I+ + +P++ ++ L FD G DD V KP +E++ARV A+ RR +V Sbjct: 62 ELTKEIKEYFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLRRYRV 121 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +NN G I++ + LP +E +L L+++ GK + Q+ I+G Sbjct: 122 EANNVIYMGNIKLDRTKLEMSAGETSEQLPLKEFELLFTLVSSPGKIFTRDQLIQLIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGY 218 +D +E V+ HI +LR++L + +G + + + R LGY Sbjct: 181 YDYEGDERTVDVHIKRLRERLNHMKNVGME-IKTIRGLGY 219 >gi|288957923|ref|YP_003448264.1| two-component response regulator [Azospirillum sp. B510] gi|288910231|dbj|BAI71720.1| two-component response regulator [Azospirillum sp. B510] Length = 226 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 8/188 (4%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGV 95 +L + DV ++ L G+ L L +++RA P++ +S S+ + +G Sbjct: 38 FLAGAEHYDVMIVDRMLPGRDG--LSLVQVLRAAGNDTPVLFLSALGSVDDRVKGLKAGG 95 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153 DD + KP E+LAR+ + RR + R G + + R + G+ L RE Sbjct: 96 DDYLTKPFAFSELLARIEVLVRRRGAAQPQTRLAVGDLELDLLSRSVKRCGKAIDLLPRE 155 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 +LEYLM N G V +T + ++ FD + NV++ HI++LR+K+ + + Sbjct: 156 FSLLEYLMRNAGSVVTRTMMLENVWDYHFDP--QTNVIDVHIARLRQKIDKDFPTPLIHT 213 Query: 213 KRFLGYSI 220 R GYS+ Sbjct: 214 VRGAGYSL 221 >gi|304405183|ref|ZP_07386843.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304346062|gb|EFM11896.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 228 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 9/202 (4%) Query: 27 EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF +LE EE + +EDV+ ++ + L L IR +P++ ++ Sbjct: 25 EGFRALEAADGEEASRVMRQEDVALAIVDVMMPEKDGLMLCEEIRRDYDIPVMLLTARGE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEV 142 L F SG DD + KP E+L RV A+ RR + VS+ + + G V + V Sbjct: 85 LDDKARGFRSGTDDYMVKPFEPDELLYRVRALLRRYRIVSSEKLQLGGTTVDRHSYEVNV 144 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 GE PLP +E +L L + G+ + Q+ I+G D ++ ++ HI +LR++ Sbjct: 145 HGENVPLPLKEFELLAQLASQPGRIFTREQLLRPIWGA-DYEGDDRTIDVHIKRLRERFA 203 Query: 203 N---KLGFDPVDSKRFLGYSID 221 GF + + R LGY ++ Sbjct: 204 PFGLSAGF-AITTVRGLGYKLE 224 >gi|295700312|ref|YP_003608205.1| transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439525|gb|ADG18694.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 225 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + P++ ++ S+ ++ +G DD + KP RE++AR+ RR S Sbjct: 63 LRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQSPS 122 Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + D R ++G + RER +LE L+ GK V K + AI+ L Sbjct: 123 KASEVVCGDLSFDIDTRQFTLKGAPLNVTPRERSVLEALILRLGKTVTKPALVDAIFTLA 182 Query: 182 DEAVEENVVESHISKLRKKL 201 DE E+ VE +IS+LRKKL Sbjct: 183 DEP-SEDAVEIYISRLRKKL 201 >gi|256789898|ref|ZP_05528329.1| response regulator [Streptomyces lividans TK24] Length = 229 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 8/150 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R+IR S+VP++ + + ++G DD + KP ++ AR+AA+ RR Sbjct: 61 LDVLRMIRGISRVPVLVATARDDETEIIRLLNAGADDYMVKPFSGGQLAARLAAVLRRSA 120 Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + RA P+ R+ R + G PL RRE +L YL A+ + +++ +I Sbjct: 121 PAGLRAARPPVLRVADLRIDPTARTAHLAGRELPLTRREFDLLAYLAAHADQVMSRQRIL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK 204 + ++ VE+ V+ H+S LR+K+ K Sbjct: 181 AEVWQ--QPYVEDQTVDVHLSALRRKMGEK 208 >gi|209523452|ref|ZP_03272007.1| multi-component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209496194|gb|EDZ96494.1| multi-component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 628 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 111/227 (48%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSA-IEAFLIGKGEK 59 +L++D + D +A+ ++ N + E++QSS+ + V IE L+ Sbjct: 3 ILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDG--- 59 Query: 60 VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + L +R+H+ QVP++ ++ + Q + D+G DD + KP+ E+ AR+ A+ RR Sbjct: 60 -ISLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRR 118 Query: 119 LKVSNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + T V + D G+ L +E +LE LM NR + + +I + Sbjct: 119 SSEATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKL 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDWN 223 + FD+ N V +HI LR+KL+ G + +++ LGY ++ N Sbjct: 179 WT-FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224 >gi|169825763|ref|YP_001695921.1| transcriptional regulatory protein SrrA [Lysinibacillus sphaericus C3-41] gi|168990251|gb|ACA37791.1| Transcriptional regulatory protein srrA (Staphylococcal respiratory response protein A) [Lysinibacillus sphaericus C3-41] Length = 216 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 3/145 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR VP+I ++ + + G DD + KP E+LAR+ A+ RR KV N Sbjct: 54 IRKFWHVPIIMLTAKGEHSDIVKGLNIGADDYILKPFDEEELLARIHAVLRRTKVENKVV 113 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 +R+ + + Q E PL +E ++ + + K ++ + + ++G + ++E Sbjct: 114 VFEGLRLDKESFELYFQQEAIPLTPKEFSMMSLFLDYQNKVFSREHLINTVWG-YHVSIE 172 Query: 187 ENVVESHISKLRKKLRNKLGFDPVD 211 + ++SH+ LR+KLR K GF P D Sbjct: 173 DRTIDSHVRNLREKLR-KSGF-PAD 195 >gi|325263338|ref|ZP_08130073.1| DNA-binding response regulator YycF [Clostridium sp. D5] gi|324031731|gb|EGB93011.1| DNA-binding response regulator YycF [Clostridium sp. D5] Length = 221 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 73/141 (51%), Gaps = 1/141 (0%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L + ++ +P I ++ + L FD G DD V KP + +L R+ A+++R Sbjct: 59 LRLYQELQKTRNIPAIFLTAKDEERDMLAAFDMGADDYVVKPFSMKVLLKRIEAVFKR-S 117 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + I ++ + ++G+ L +E ++LEYL+ N+G+ + K I I+GL Sbjct: 118 SEDQTLSCREITLYPLRKQVFLKGQEITLTAKEYQLLEYLLRNQGQVLTKENILEQIWGL 177 Query: 181 FDEAVEENVVESHISKLRKKL 201 + V +N V I++LRKK+ Sbjct: 178 DGQFVVDNTVSVTINRLRKKI 198 >gi|323340668|ref|ZP_08080920.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] gi|323091791|gb|EFZ34411.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] Length = 228 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 63/224 (28%), Positives = 101/224 (45%), Gaps = 27/224 (12%) Query: 18 LFGDDGVSLEGFNSLEFE-------------EWLQSSAREDVSAIEAFLIGKGEKVLELP 64 L +D +L F SLE + E L ++ ED AI L+ LE+ Sbjct: 5 LIIEDEDNLSNFVSLELQHEGYETKVCENGREGLDTALNEDWDAILLDLMLPELNGLEVC 64 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R P+I ++ S+ + D G DD V KP E+LAR+ A+ RR+ N+ Sbjct: 65 RRLRQSKSTPIIMMTARDSVIDRVSGLDHGADDYVVKPFAIEELLARLRAVLRRVDFEND 124 Query: 125 RAETGPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 T V RD ++ E+ L +RE +L LM N +A+ + Sbjct: 125 NGTTKQTTVTY--RDLTIEKENRVVRRGDEIIELTKREYELLLTLMENINVVLARDVLLK 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 ++G ++ +E NVV+ +I LR K+ ++ G D + + R GY Sbjct: 183 KVWG-YESQIETNVVDVYIRYLRNKI-DRPGEDSYIQTVRGTGY 224 >gi|92113906|ref|YP_573834.1| two component transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91796996|gb|ABE59135.1| two component transcriptional regulator, winged helix family [Chromohalobacter salexigens DSM 3043] Length = 220 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 107/221 (48%), Gaps = 8/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D L+ DG + +++ F E ++++ E SA+ L + Sbjct: 3 ILLVEDDPLLGDGIKTALVREAYTVDWFT--EGHHAIEAAHNETFSAMILDLGLPDMDGM 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R + +P++ ++ +++ + D+G DD V KP +E+LAR+ + RR + Sbjct: 61 TVLKRLRESTALPILILTARDAVEERISGLDAGADDYVLKPFDLKELLARLRVVTRRAEG 120 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +R+ T G + + G L RRE +L L + K +++ ++ S +YG Sbjct: 121 RASRSLTLGALSIDEASHSVSWHGRDVALGRREYALLLELARHPDKVLSRPRLESLLYG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N VE H+ LRKKL L + + R +GY +D Sbjct: 180 WGEEVASNAVEVHVHHLRKKLDKSL----IMTVRGIGYRLD 216 >gi|8100674|gb|AAF72358.1|AF192329_19 VanRB [Enterococcus faecalis] Length = 220 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 5/160 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R RA + P++ ++ + + FD+ DD V KP + +L RV A+ RR Sbjct: 63 ELLREFRAKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSGA 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + G PL R+E IL L+ N+G+ + I S I+G + Sbjct: 123 LAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + + V +HI LR KL + + + R +GY ++ Sbjct: 182 DFEGDGSTVHTHIKNLRAKLPENI----IKTIRGVGYRLE 217 >gi|107026097|ref|YP_623608.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692719|ref|YP_838252.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105895471|gb|ABF78635.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116650719|gb|ABK11359.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] Length = 248 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 13/150 (8%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128 + P++ +S + + +G DD + KP E+ AR+ + RR + + +T Sbjct: 96 RTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMAARLEVLLRRSQAAPATFDTTLV 155 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 GP+++ R GE L E R+LEY+M N G+ + +T +F A++G FD Sbjct: 156 VGPLKLDLISRKAFRDGEEIVLLPTEYRVLEYMMRNAGQTITRTMLFEAVWGYHFDPGT- 214 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 N++E H+ +LR+K+ DP D+K+ + Sbjct: 215 -NLIEVHMGRLRRKI------DPSDAKQMI 237 >gi|237798700|ref|ZP_04587161.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806133|ref|ZP_04592837.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021553|gb|EGI01610.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027246|gb|EGI07301.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. oryzae str. 1_6] Length = 223 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 76/137 (55%), Gaps = 3/137 (2%) Query: 67 IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +RA S+ +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + R Sbjct: 66 LRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLGGER 125 Query: 126 AETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + + V+ D R + E+ L RE+ +LE L+A G+ ++K Q+ + ++GL DE Sbjct: 126 QQRCGVLVYDLDTRRFTLSDELLTLTSREQAVLEALIARPGRVMSKEQVAAQVFGL-DEE 184 Query: 185 VEENVVESHISKLRKKL 201 + +E +I +LRKKL Sbjct: 185 ASPDAIEIYIHRLRKKL 201 >gi|256824251|ref|YP_003148211.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687644|gb|ACV05446.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 226 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 17/217 (7%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L ++G+ + +DG S EE+ ++ A D+ ++ L G +E+ R +R Sbjct: 21 LEREGHEVVVREDGRS-------GLEEFTRNPA--DLVLLDVMLPGMSG--VEVCRELRR 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNR 125 S VP+I ++ S + + G DD V KP RE+LAR+ A+ RR ++ Sbjct: 70 ESSVPIIMLTAKDSEVDKVVGLEIGADDYVTKPYSARELLARINAVLRRRIAPPAQEDHI 129 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 G + + +D V+GE +P +E +LE LM N G+ + + Q+ ++G D Sbjct: 130 VRVGDVELDADSHVVVVRGEPVSMPLKEFELLEMLMRNHGRVLTRAQLIDRVWG-ADYVG 188 Query: 186 EENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 + ++ HI ++R K+ N + + R LGY + Sbjct: 189 DTKTLDVHIKRVRGKVEENPSSPRMITTIRGLGYKFE 225 >gi|91779593|ref|YP_554801.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91692253|gb|ABE35451.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 225 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + P++ ++ S+ ++ +G DD + KP RE++AR+ RR S Sbjct: 63 LRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQSPS 122 Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + D R ++G + RER +LE L+ GK V K + AI+ L Sbjct: 123 KASEVVCGDLAFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFTLA 182 Query: 182 DEAVEENVVESHISKLRKKL 201 DE E+ VE +IS+LRKKL Sbjct: 183 DEP-SEDAVEIYISRLRKKL 201 >gi|90407882|ref|ZP_01216057.1| transcriptional regulator [Psychromonas sp. CNPT3] gi|90310973|gb|EAS39083.1| transcriptional regulator [Psychromonas sp. CNPT3] Length = 228 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 7/167 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +L+ R + ++V ++ P+ +D SG DD + KP E+ AR+ +I Sbjct: 59 GISLLKTLRKMGKQAKVIVVSAKSLPA--DKIDALLSGADDYMTKPFSFDELHARIVSIA 116 Query: 117 RRLKVSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR ++N + + D + Q ++ L + E I+E L + + QI Sbjct: 117 RRGNITNKNNKISISQYTLDLFTKTLTYQSQLINLTKNEFLIIECLFLAPNRVINIEQIS 176 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 A+ G F E++ +N +E+H+S +RKK+R +LG +P + +KR GY + Sbjct: 177 EAVAGSF-ESLSKNCIEAHLSTIRKKIR-QLGAEPLIQNKRGFGYYV 221 >gi|325679875|ref|ZP_08159444.1| putative heme response regulator HssR [Ruminococcus albus 8] gi|324108313|gb|EGC02560.1| putative heme response regulator HssR [Ruminococcus albus 8] Length = 224 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 106/213 (49%), Gaps = 16/213 (7%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL ++GY +DGV E + LE + ++ I + ++ EL R +R Sbjct: 20 ALKQNGYQPFTANDGV--EALDMLE---------KTNIDLIISDIMMPNMDGYELTRQLR 68 Query: 69 -AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 A Q+P+I ++ S + + F +G DD + KPI E++ RV A+ +R K+++ Sbjct: 69 NADFQIPIIMVTAKESFEDKKEGFGAGADDYMVKPIDINEMILRVGALLKRSKLASEHTM 128 Query: 128 T-GPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 T G + D + + G +P+ E ++L L++ K + Q+ ++G+ D+ V Sbjct: 129 TVGSCVLDYDAQTVSIDGGAGETIPQMEFKLLFKLLSYPNKIFTRRQLLDELWGM-DKDV 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E V+ HI +LR++ + F V + R LGY Sbjct: 188 DERTVDVHIKRLRERYGSTDDFSIV-TVRGLGY 219 >gi|289773780|ref|ZP_06533158.1| response regulator [Streptomyces lividans TK24] gi|289703979|gb|EFD71408.1| response regulator [Streptomyces lividans TK24] Length = 238 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 8/150 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R+IR S+VP++ + + ++G DD + KP ++ AR+AA+ RR Sbjct: 70 LDVLRMIRGISRVPVLVATARDDETEIIRLLNAGADDYMVKPFSGGQLAARLAAVLRRSA 129 Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + RA P+ R+ R + G PL RRE +L YL A+ + +++ +I Sbjct: 130 PAGLRAARPPVLRVADLRIDPTARTAHLAGRELPLTRREFDLLAYLAAHADQVMSRQRIL 189 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK 204 + ++ VE+ V+ H+S LR+K+ K Sbjct: 190 AEVWQ--QPYVEDQTVDVHLSALRRKMGEK 217 >gi|260587254|ref|ZP_05853167.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM 20583] gi|331083571|ref|ZP_08332682.1| hypothetical protein HMPREF0992_01606 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542449|gb|EEX23018.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM 20583] gi|330403782|gb|EGG83334.1| hypothetical protein HMPREF0992_01606 [Lachnospiraceae bacterium 6_1_63FAA] Length = 224 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 115/231 (49%), Gaps = 22/231 (9%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGK-GE 58 M ++D +++ + G G +GF + EF++ L+ E + ++ L G+ G Sbjct: 1 MIYCVEDERNIRELLVYTLGTTGFEAKGFGDGKEFKKALKEELPELI-LLDIMLPGEDGY 59 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +LE + + S++P+I ++ + + + G DD + KP E LARV A+ RR Sbjct: 60 TLLEELKKEPSTSEIPVIMVTAKEAEYDKVRGLEGGADDYITKPFGMMEFLARVKAVLRR 119 Query: 119 LKVSNNRAE----TGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 K +++ E T + +VF + R E L +E +L YL+ N+G ++ Sbjct: 120 SKKHSSKKEYHYKTLTVNVERHQVFDNDRAVE-------LTLKEFELLRYLVENKGIVLS 172 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +I I+G ++ A E V+ HI LR+KL + GF +++ R +GY I Sbjct: 173 RDEILEKIWG-YECAGETRTVDVHIRTLRQKLGDS-GF-LIETVRGVGYRI 220 >gi|218680464|ref|ZP_03528361.1| putative two-component response regulator protein [Rhizobium etli CIAT 894] Length = 189 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 12/158 (7%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A Q+P++ ++ ++ + D+G DD + KP ++ E++AR+ A+ RR V+ T Sbjct: 33 AKQQIPVLVLTARGAVDERIAGLDAGADDYLIKPFNNGELIARIRALMRRSPVT-----T 87 Query: 129 GPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 P F+D R G L E+ +LE LM N GK V+K ++ A D Sbjct: 88 MPTLEFADVRFEMASRQVTCNGTEMALAPSEKSLLELLMRNGGKVVSKRKMEHAFSEFGD 147 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E N VE +S+LR+KL +++ R +GY + Sbjct: 148 ER-SSNAVELAVSRLRRKLEGHPADAVIETVRGVGYML 184 >gi|50085995|ref|YP_047505.1| regulator of kdp operon (transcriptional effector) [Acinetobacter sp. ADP1] gi|49531971|emb|CAG69683.1| regulator of kdp operon (transcriptional effector) [Acinetobacter sp. ADP1] Length = 237 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 20/154 (12%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R SQ+P+I +S P Q + D+G +D V KP +E+ AR+ ++R+ Sbjct: 69 EVLKEMRQWSQIPVIVLSARPDEQQKIKLLDAGANDYVTKPFSIQELCARIRVMFRQ--- 125 Query: 122 SNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +++ VF+DG+ ++ G+ L ++E ++L L+ ++GK V + QI Sbjct: 126 --QPSQSEHNLVFNDGQLFVDVAEHSVKLAGDDVVLTKKEFQLLALLIRHQGKIVTQKQI 183 Query: 174 FSAIYGLFDEAVEENVVESHISK-LRKKLRNKLG 206 S ++G+ E ++H + L KKLR KLG Sbjct: 184 LSELWGITHEE------DTHYLRILVKKLRTKLG 211 >gi|21219087|ref|NP_624866.1| response regulator [Streptomyces coelicolor A3(2)] gi|6137054|emb|CAB59609.1| putative response regulator [Streptomyces coelicolor A3(2)] Length = 238 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 8/150 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R+IR S+VP++ + + ++G DD + KP ++ AR+AA+ RR Sbjct: 70 LDVLRMIRGISRVPVLVATARDDETEIIRLLNAGADDYMVKPFSGGQLAARLAAVLRRSA 129 Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + RA P+ R+ R + G PL RRE +L YL A+ + +++ +I Sbjct: 130 PAGLRAARPPVLRVADLRIDPTARTAHLAGRELPLTRREFDLLAYLAAHADQVMSRQRIL 189 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK 204 + ++ VE+ V+ H+S LR+K+ K Sbjct: 190 AEVWQ--QPYVEDQTVDVHLSALRRKMGEK 217 >gi|304440638|ref|ZP_07400522.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370825|gb|EFM24447.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 216 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 96/203 (47%), Gaps = 9/203 (4%) Query: 23 GVSLEGFNSLEFE---EWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGI 78 +S +GF FE ++ ++ D+ ++ L G G+++L+ R R +I + Sbjct: 19 ALSTQGFEVSTFEKGPDFFKTEILPDIILLDIMLPGMSGQEILKKIRENRKFDNTLVIML 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR 138 + + + ++G DD + KP E+++RV A RR+ E I + + R Sbjct: 79 TAKSAEMDVVSCLEAGADDYIKKPFGVMELISRVKAHIRRIGREAEEIEVRDIMIDTKRR 138 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 + GE L +E +L+YL N+ + + I I+G FD E V+ HI+ LR Sbjct: 139 TVKKDGEEINLTYKEFELLKYLAENKSIVLTRENIIEKIWG-FDYIGETRTVDMHIASLR 197 Query: 199 KKLRNKLGFDPVDSKRFLGYSID 221 + K+G D + + R +GY ++ Sbjct: 198 Q----KIGEDYIATIRGVGYKME 216 >gi|239981204|ref|ZP_04703728.1| putative two-component system response regulator [Streptomyces albus J1074] Length = 226 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 5/149 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEEAVPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G D + ++ H+ +LR K+ G Sbjct: 182 WG-ADYVGDTKTLDVHVKRLRAKIEPDPG 209 >gi|254519135|ref|ZP_05131191.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] gi|226912884|gb|EEH98085.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] Length = 223 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 88/165 (53%), Gaps = 12/165 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S L + G DD + KP + ++ARV+AI +R S Sbjct: 63 ICREVRKKSDVPIIVVTSRDSQVDELMSINLGADDFITKPYNTETLIARVSAILKR---S 119 Query: 123 NNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ T + + D + G + L + E +IL YL+ N+GK V++ + Sbjct: 120 YGKSSTDEVIYYGDLKLNLANGSISYKSNTIELTKNELKILTYLIKNKGKIVSRDALMDT 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 ++ D +++N + ++++LRKK+ ++G + ++++R LGY I Sbjct: 180 LWQ-SDLFLDDNTLSVNVTRLRKKIE-EIGLKNIIETRRGLGYII 222 >gi|42781806|ref|NP_979053.1| transcription response regulator-like protein [Bacillus cereus ATCC 10987] gi|42737730|gb|AAS41661.1| transcription response regulator-like protein [Bacillus cereus ATCC 10987] Length = 221 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 7/163 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ ++IR+ S +P+I ++ + + FD G+DD + KP ++ RV A+ RR Sbjct: 63 FEVAKMIRSQSNIPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSY 122 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + NN +R+ D V L +E IL+ L N K + + I ++ Sbjct: 123 DNNVNNHLIFKEVRIDVDAYRVYVDDVEIFLTTKEFEILQLLFQNERKVLTRENIVEKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +D E ++++HI LRK KL + + + +GY +D Sbjct: 183 G-YDYFGETRIIDTHIKNLRK----KLAIPYIKTIKGIGYKVD 220 >gi|329902991|ref|ZP_08273335.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Oxalobacteraceae bacterium IMCC9480] gi|327548543|gb|EGF33207.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Oxalobacteraceae bacterium IMCC9480] Length = 228 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 5/163 (3%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA +S +P++ ++ S++ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLRKLRARNSHLPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRG 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP+ GR + ++ L RE +LE L+ G+ V+K Q+ + Sbjct: 120 VGGGPTVVRHGPLSYDQVGRIAYINEQMLDLSARELGLLEVLLQRTGRLVSKEQLVDHLC 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E ++ +LRKK+ +LG + + R LGY ++ Sbjct: 180 E-WGEEVSNNAIEVYVHRLRKKI--ELGGVRIATVRGLGYCLE 219 >gi|325264701|ref|ZP_08131430.1| DNA-binding response regulator [Clostridium sp. D5] gi|324029993|gb|EGB91279.1| DNA-binding response regulator [Clostridium sp. D5] Length = 232 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 27/206 (13%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66 R L++DGY +++ F+ E + L+ A D+ ++ L G GE EL Sbjct: 21 RILMQDGY--------DTIQAFSGTEAKLLLRLEA-PDLILLDLMLPGMSGE---ELIVT 68 Query: 67 IRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 +R +P++ +S L+T + +G DD + KP +E+LARV A RR K+ Sbjct: 69 VREEMGLDLPILVLSAKAGLETKVAALKNGADDYLTKPFEPQEVLARVYAALRRYKIEAG 128 Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E + + D R E+ G+ PL E IL L+ + K ++ ++ + Sbjct: 129 KTEKETAFYTYKKLNLHPDSRKAEISGQELPLTMHEYDILYLLIKDPEKVYSRENLYEQV 188 Query: 178 Y--GLFDEAVEENVVESHISKLRKKL 201 + G + E+N V H+S LR+KL Sbjct: 189 WKGGYYG---EDNTVNVHVSNLRRKL 211 >gi|291280200|ref|YP_003497035.1| two-component system, OmpR family, response regulator [Deferribacter desulfuricans SSM1] gi|290754902|dbj|BAI81279.1| two-component system, OmpR family, response regulator [Deferribacter desulfuricans SSM1] Length = 233 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 9/142 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVS- 122 IR S+ P+I I+ S+ + F+ G DD + KP E+LAR+ AI RR +K S Sbjct: 68 IREMSETPIIIITAKESVSNKVLCFEYGCDDYIIKPFEKMELLARIKAILRRSNKIKSSN 127 Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 NN T P + + + GE L +E IL YL+ N GK + + QI ++G Sbjct: 128 DNNIIITPPFEINLEEGYCKKDGEKIDLTAKELEILSYLVKNAGKNLKRDQIIKHVWG-- 185 Query: 182 DEAVEE--NVVESHISKLRKKL 201 D+++ + ++ HI +R+K+ Sbjct: 186 DDSLYKWSRSLDVHIQHIRQKI 207 >gi|266620348|ref|ZP_06113283.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM 13479] gi|288868060|gb|EFD00359.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM 13479] Length = 229 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 7/167 (4%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L + IR S P+I + L +D D+G DD + KP E+LAR+ A+ RR Sbjct: 60 LSLLQAIRQKSIMTPVIITTALDGLGDRIDGLDAGADDYLVKPFAVEELLARIRAVTRRP 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + A + D E+ + E L RE +LEYLM N G+ + + I Sbjct: 120 GRTADTASLAVGNLSLDAVKHELTRNGAESETVTLSGRESSLLEYLMRNAGRTLPRNAIL 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 S ++G D VE ++++I LR++L++ G + + +GY ++ Sbjct: 180 SYVWG-PDSEVEAGNLDNYIYFLRRRLKSLHGNAKIQTVHGVGYRLE 225 >gi|295398894|ref|ZP_06808876.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110499|ref|YP_003988815.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978360|gb|EFG53956.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215600|gb|ADP74204.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 224 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 9/158 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IRA Q P+I I+ S+ + D+G DD + KP E+LAR+ A++RR+ Sbjct: 62 MEVCRRIRAVKQTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVH 121 Query: 121 V-SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R T + V D R + + L +RE +L + N + + + ++ Sbjct: 122 APAEERLLTFKDLTVDLDARTVKKGNQFIELTKREYDLLVTFLQNTNIVLTRDTLLDKVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 G FD VE NVV+ ++ LR KL D D +R++ Sbjct: 182 G-FDTEVETNVVDVYVRYLRHKL------DETDKERYI 212 >gi|170738031|ref|YP_001779291.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169820219|gb|ACA94801.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 248 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 13/129 (10%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFP 148 +G DD + KP E+ AR+ + RR + + +T GP+++ R GE Sbjct: 117 AGGDDYLTKPFDPEEMAARLEVLLRRSQAAPATFDTTLVVGPLKLDLISRKAFRDGEEIV 176 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGF 207 L E R+LEY+M N G+ + +T +F A++G FD N++E H+ +LR+K+ Sbjct: 177 LLPTEYRVLEYMMRNAGQTITRTMLFEAVWGYHFDPGT--NLIEVHMGRLRRKI------ 228 Query: 208 DPVDSKRFL 216 DP D+K+ + Sbjct: 229 DPSDAKQMI 237 >gi|317057519|ref|YP_004105986.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315449788|gb|ADU23352.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 224 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 107/215 (49%), Gaps = 20/215 (9%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL ++GY DG+ E + LE + ++ I + ++ EL R +R Sbjct: 20 ALKQNGYQPFTASDGI--EALDMLE---------KTNIDLIISDIMMPNMDGYELTRQLR 68 Query: 69 -AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 A+ Q+P+I ++ S + FD+G DD + KPI E++ RV A+ +R K+++ Sbjct: 69 NANFQMPIIMVTAKESFEDKKIGFDAGTDDYMVKPIDINEMILRVGALLKRSKLASEHTM 128 Query: 128 T-GPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 T G + D + QGE +P+ E ++L L++ K + Q+ ++G+ D+ Sbjct: 129 TVGNCVLDYDAQTVAFDGQQGET--IPQMEFKLLFKLLSYPNKIFTRRQLLDELWGM-DK 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+E V+ HI +LR++ + F V + R LGY Sbjct: 186 DVDERTVDVHIKRLRERYGSAEAFSIV-TVRGLGY 219 >gi|190892280|ref|YP_001978822.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190697559|gb|ACE91644.1| probable two-component response regulator protein [Rhizobium etli CIAT 652] Length = 223 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 14/169 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE + +P + R +I ++ + + ++ D G DD + KP E++AR+ A+ Sbjct: 57 GEGLRFIPELRRTGKDTSIIVLTALNAPKERVEGLDLGADDYLGKPFLVEELMARLRAVL 116 Query: 117 RR------LKVSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 RR LK++ R P+ V + G P LPRRE +L L + K V Sbjct: 117 RRPPSLSELKITAGRMVIDPLHVSVTVGDTP------LDLPRRELLVLAALARRKEKTVL 170 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ + +A+Y ++E ++ N +++HIS+LRK+L + + + R +GY Sbjct: 171 RSTLEAAVYN-YEEEIQSNALDAHISRLRKRLADAGAEVSIHNIRGVGY 218 >gi|296162732|ref|ZP_06845517.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295887048|gb|EFG66881.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 296 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 94/202 (46%), Gaps = 5/202 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D + + + +L+ + + L + DV ++ L G+ V Sbjct: 74 LLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDAADQLLRTNHYDVILLDLNLPKLSGKNV 133 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R+ + P++ ++ S+ ++ +G DD + KP RE++AR+ RR Sbjct: 134 LR--RLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 191 Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + G + D R ++G + RER +LE L+ GK V K + AI+ Sbjct: 192 PSKASEVVCGDLAFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 251 Query: 180 LFDEAVEENVVESHISKLRKKL 201 L DE E+ VE +IS+LRKKL Sbjct: 252 LADEP-SEDAVEIYISRLRKKL 272 >gi|228969996|ref|ZP_04130710.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar sotto str. T04001] gi|228789723|gb|EEM37591.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar sotto str. T04001] Length = 231 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 74/143 (51%), Gaps = 3/143 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119 E+ +IIR S VP+I ++ Q + F+ G+DD + KP +R +++R+ A+ +R Sbjct: 64 EVAKIIRKQSPVPIIMLTALIDEQNQIRGFNLGIDDYITKPFSYRILISRIQAVLKRSNT 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ N I + D V L + E IL+ L+ N K + + QI I+G Sbjct: 124 RIMENHLIFKEIHLICDIYKVLVDKNEVMLTKTEFEILQILIRNERKVLTRGQILQEIWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLR 202 ++ + +V++HI +R+KL+ Sbjct: 184 -YNYYGDTKLVDTHIKNIRRKLK 205 >gi|163814357|ref|ZP_02205746.1| hypothetical protein COPEUT_00508 [Coprococcus eutactus ATCC 27759] gi|158449992|gb|EDP26987.1| hypothetical protein COPEUT_00508 [Coprococcus eutactus ATCC 27759] Length = 223 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127 A Q+P++ I+ S F SG DD + KP++ E++ RV A+ RR ++ N ++ Sbjct: 70 AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 129 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G D E LP++E +L L A+ G+ K Q+ ++G EA + Sbjct: 130 IGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYETEA-DP 188 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +E HI ++R++ ++ F+ V + R +GY + Sbjct: 189 HTIEVHIGRIRERFKDNPDFEIV-TMRGIGYKV 220 >gi|149182828|ref|ZP_01861289.1| two-component response regulator [Bacillus sp. SG-1] gi|148849443|gb|EDL63632.1| two-component response regulator [Bacillus sp. SG-1] Length = 239 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 13/140 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-----------TGPIRVFSDGRDPEV 142 G DD + KP RE++ARV AI RR + + AE G ++VF + + Sbjct: 96 GADDYMTKPFSPREVMARVKAILRRSQAVIDVAEHLRSEQKDYLQVGDLKVFPEQYEAYF 155 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + L +E +L YL NRG+ + + Q+ SA++ +D A + +V+ HIS LR+K+ Sbjct: 156 AENLLELTPKEFELLMYLTENRGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLREKIE 214 Query: 203 -NKLGFDPVDSKRFLGYSID 221 N + + R LGY ++ Sbjct: 215 TNTKKPAYIKTIRGLGYKLE 234 >gi|291532410|emb|CBL05523.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Megamonas hypermegale ART12/1] Length = 173 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 4/161 (2%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R +RA ++Q ++ ++ SL+ +D DSG DD + KP E+LAR+ A+ RR+ Sbjct: 8 IEVCRYLRAKNNQTAILMLTARDSLEDKIDGLDSGADDYLAKPFEFPELLARIRALSRRI 67 Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + N+ E +++ + L RE +++E L+ N + + + QI I Sbjct: 68 NKTFYNDIIEYNNLKLNCCNAILTYKQIEVSLSPRENQLMELLIRNTHQILPREQIIDKI 127 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +G +D + N ++ I LR+KL D + + R +GY Sbjct: 128 WG-YDTNINSNTLDVTIKSLRQKLTKLSLSDCIHTIRGIGY 167 >gi|217388361|ref|YP_002333390.1| regulatory protein VanR [Enterococcus faecalis] gi|227517498|ref|ZP_03947547.1| response regulator [Enterococcus faecalis TX0104] gi|260559887|ref|ZP_05832066.1| regulatory protein vanRB [Enterococcus faecium C68] gi|11345398|gb|AAG34686.1|AF310956_1 response regulator [Enterococcus faecium] gi|55709826|gb|AAV58811.1| vanRB [Clostridium sp. CCRI-9842] gi|61743147|gb|AAX55325.1| VanRB [Clostridium hathewayi] gi|61743150|gb|AAX55327.1| VanRB [Clostridium hathewayi] gi|61743153|gb|AAX55329.1| VanRB [Clostridium hathewayi] gi|80973253|gb|ABB53358.1| VanRB [Clostridium sp. MLG245] gi|80973264|gb|ABB53368.1| VanRB [Enterococcus faecium] gi|216409903|dbj|BAH02338.1| vanR [Enterococcus faecalis] gi|227075103|gb|EEI13066.1| response regulator [Enterococcus faecalis TX0104] gi|229463102|gb|ACQ66100.1| response regulator [Enterococcus faecium] gi|260074111|gb|EEW62434.1| regulatory protein vanRB [Enterococcus faecium C68] Length = 219 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 5/160 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R RA + P++ ++ + + FD+ DD V KP + +L RV A+ RR Sbjct: 63 ELLREFRAKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSGA 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + G PL R+E IL L+ N+G+ + I S I+G + Sbjct: 123 LAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + + V +HI LR KL + + + R +GY ++ Sbjct: 182 DFEGDGSTVHTHIKNLRAKLPENI----IKTIRGVGYRLE 217 >gi|332531744|ref|ZP_08407629.1| copper-sensing two-component system response regulator CpxR [Pseudoalteromonas haloplanktis ANT/505] gi|332038720|gb|EGI75162.1| copper-sensing two-component system response regulator CpxR [Pseudoalteromonas haloplanktis ANT/505] Length = 229 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 16/136 (11%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGP-----IRVFSDGRDPEVQGEV 146 G DD + KP +HRE+LARV AI RR++ N N A T I V R+ + G Sbjct: 93 GADDYIPKPFNHRELLARVKAITRRIEHINSLNVATTSKLLVNGITVNLAAREASIDGST 152 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKLR 202 L E IL L N G+ V+K QI + G FD + ++ H+S +RKK+ Sbjct: 153 LTLTGTEYEILTLLCKNAGEVVSKEQISEEVLGRRLASFDRS-----IDMHVSNIRKKIA 207 Query: 203 NKLGFDPVDSKRFLGY 218 + + + + R GY Sbjct: 208 EHIPGERIKTMRGTGY 223 >gi|317473954|ref|ZP_07933233.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316909796|gb|EFV31471.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 245 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 18/173 (10%) Query: 45 DVSAIEAFLIG------KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98 D+SA L+ G K+ + + + ++VP+I I+ + T+ F+ G DD Sbjct: 43 DISAYNLLLLDVMMGEISGFKMASMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDY 102 Query: 99 VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPR 151 ++KP RE+ ARV A+ RR E P ++ + + + GE PL + Sbjct: 103 ISKPFSLREVAARVKAVLRR--TQQGEGERAPEQIVYESLVLDIIKKKVSIDGEEAPLTK 160 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENVVESHISKLRKKLRN 203 +E IL L+ N+G+ ++ I I+ DE V + ++ +I++LRKK RN Sbjct: 161 KEFEILLLLLQNKGRVFSREDILGRIWS--DEVYVLDRTIDVNITRLRKKNRN 211 >gi|326792334|ref|YP_004310155.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543098|gb|ADZ84957.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 226 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 6/145 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR VP+I +S + T +D G DD + KP E+ ARVA RR Sbjct: 62 EILKEIRTWGDVPVIILSAKDMVGTKIDLLKLGADDYITKPFDLGEVAARVAVQLRRAHK 121 Query: 122 SNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 AE + V + + V G+ L +E +LE L+ N K +K I+ A++ Sbjct: 122 QMKEAEVLSYKDLIVEKEDKRVTVNGQEVELTAKEYSMLELLLNNPNKVFSKANIYEAVW 181 Query: 179 GLFDEAV-EENVVESHISKLRKKLR 202 +E + ++N V++H+S LR KL+ Sbjct: 182 N--EEYLGDDNAVKTHMSNLRSKLK 204 >gi|293416465|ref|ZP_06659104.1| DNA-binding transcriptional regulator QseB [Escherichia coli B185] gi|291431821|gb|EFF04804.1| DNA-binding transcriptional regulator QseB [Escherichia coli B185] Length = 219 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R Q P++ ++ +L+ ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 L---REWREKGQCEPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + R + GE L +E +LE LM N G+ + + I +Y Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|262371880|ref|ZP_06065159.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262311905|gb|EEY92990.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 225 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 12/167 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +++ R IR S +P++ IS LQ +D + G DD + KP E+LAR+ A+ RR Sbjct: 61 MQVLRQIRQRSALPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARINALLRRGH 120 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 LK + + G + + + +G+ L RE IL L+++ K +K + Sbjct: 121 AETAQLKSQSQLLKNGDLVLDVEQHLATFKGQQIELSNREWAILIPLVSHPNKIFSKANL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y FD V N +E ++ LR KLG D + + R LGY + Sbjct: 181 EDKLYD-FDSEVTSNTIEVYVHHLRA----KLGKDFIRTIRGLGYRL 222 >gi|283795568|ref|ZP_06344721.1| regulatory protein VanR [Clostridium sp. M62/1] gi|291077236|gb|EFE14600.1| regulatory protein VanR [Clostridium sp. M62/1] Length = 237 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 19/194 (9%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRAHSQVPLIGISD 80 +S EG+ +E E LQ++ D S I+ +++ E E + IRA Q PL+ ++ Sbjct: 26 LSAEGYEVVEAENGLQAAELADES-IDMYILDVNMPEETGFEAAKKIRARFQAPLLFLTA 84 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN----NRAET----GPIR 132 Y ++ F G DD + KP + E++ RV A++RR + R ET G I Sbjct: 85 YSGEADKVNGFLIGADDYIVKPFSNMEMIMRVRAVFRRAEQGTPPAAAREETAEKKGMIP 144 Query: 133 VFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 + D E Q V L E RILE + +R K + I+ +++G ++AV + Sbjct: 145 IGDLLLDTESQSLIKNQAVISLTYTEYRILELMAKHRKKIYSLDNIYQSVWG--EDAVGD 202 Query: 188 NVVESHISKLRKKL 201 + HI +RKK+ Sbjct: 203 GAIMVHIKNIRKKM 216 >gi|206563997|ref|YP_002234760.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198040037|emb|CAR56018.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 220 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 12/157 (7%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R +P I I+ + + DSG DD + KP E+LAR+ A+ RR RA+ Sbjct: 68 RRDENLPAIIITARDGVPDRIAGLDSGADDYLVKPFELDELLARIRAVSRR---HAGRAQ 124 Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 T GP+R+ + G+ PL +E +L LM G +++ Q +Y + E Sbjct: 125 TTLAIGPLRLDPVKHLVWLDGDEVPLSPKEFVLLHELMREPGAVISREQFEERLYS-WGE 183 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E N V+ HI LRK KLG D + + R +GY I Sbjct: 184 EIESNAVQVHIHNLRK----KLGHDMIRTVRGVGYRI 216 >gi|182434197|ref|YP_001821916.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326774709|ref|ZP_08233974.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178462713|dbj|BAG17233.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326655042|gb|EGE39888.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 263 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 16/187 (8%) Query: 41 SAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 S R D+ ++ + G G +V+ R + S +P++ +S ++ + G DD V Sbjct: 68 SERPDLMVLDLMMPGLDGWRVMARARDM---SDLPVLVVSALDAVGYRVRALRGGADDFV 124 Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRER 154 KP H E++ARV A+ RR + +R G +R+ + R G L E Sbjct: 125 VKPFHGEELVARVEALLRR---AGHRQWAGERVGEHLRLVPERRAVVWYGGEVRLSDIEY 181 Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL---GFDPVD 211 R+L+ L+ NRG+ V Q+ + ++G + AV+ V+ + +LR+KLR G DPV+ Sbjct: 182 RLLQLLVRNRGRVVTTKQLLTRVWG-DESAVDGERVKFGVLRLRRKLRGAAGPGGRDPVE 240 Query: 212 SKRFLGY 218 + R LGY Sbjct: 241 AVRGLGY 247 >gi|169333828|ref|ZP_02861021.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM 17244] gi|169259393|gb|EDS73359.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM 17244] Length = 232 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 8/166 (4%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R +RA+ P+I ++ + + D G DD + KP E+LAR+ I R Sbjct: 61 IEICRRLRANKITTPIIMLTAKSDVSDKVMGLDIGADDYMTKPFAIEELLARIRKILSRQ 120 Query: 120 KVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 V + E G I + + + E L ++E +LEYLM N+ + + QI Sbjct: 121 VVISETKEREAVIKAGKITLDKNTYTAHFEDEEISLTKKEFELLEYLMINKNIVLTREQI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 S ++G +D E NV + +I LR K+ K + + R +GY Sbjct: 181 VSNVWG-YDYESETNVTDVYIRYLRSKIDQKYDTHYIRTVRGIGYQ 225 >gi|52841523|ref|YP_095322.1| DNA-binding response regulator [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628634|gb|AAU27375.1| DNA-binding response regulator [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 225 Score = 64.7 bits (156), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 14/158 (8%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 + P+I ++ S++ + DSG DD KP E+ AR+ A+ RR S RA++ Sbjct: 71 NSTPVIILTARESIEDRVKGLDSGADDYHIKPFDLNELSARIRALVRR---SQGRADS-V 126 Query: 131 IRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 ++ + DP V + +PRRE +L+ L+ N G+ +++ Q+ +IYG ++E V Sbjct: 127 LQYKNITLDPAAHSVFVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYG-WEEDV 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + N +E HI LRKKL + + R +GY + N Sbjct: 186 DSNALEVHIHNLRKKLNANF----IRTIRGVGYMAEKN 219 >gi|330818567|ref|YP_004362272.1| DNA-binding response regulator [Burkholderia gladioli BSR3] gi|327370960|gb|AEA62316.1| DNA-binding response regulator [Burkholderia gladioli BSR3] Length = 248 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 7/114 (6%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFP 148 +G DD + KP E+ AR+ + RR + + ++ET GP+ + GR G Sbjct: 117 AGGDDYLTKPFDPEEMAARLEVLLRRSRSAPAQSETSLTVGPLALDLIGRKASRDGVEIA 176 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201 L E R+LEY+M N G+ + +T +F A++G FD N+++ H+ +LRKK+ Sbjct: 177 LLPTEYRVLEYMMRNAGQTITRTMLFEAVWGYHFDPGT--NLIDVHMGRLRKKI 228 >gi|315221424|ref|ZP_07863345.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315189543|gb|EFU23237.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 233 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 21/203 (10%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 +VK+GY + + +G +LE E + R D+ ++ L LE+ R IR Sbjct: 21 MVKEGYEVV-----TAFDGREALEMFE----AERPDILILDLML--PEMDGLEVARTIRK 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAE 127 S VP+I +S S + + G DD + KP +RE+ ARV AI RR L + N AE Sbjct: 70 TSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRRTDLTIENQEAE 129 Query: 128 TGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 P +++ +D + GE L RE +L +L + G+ + + + ++G Sbjct: 130 AEPKEIVIGDLQILTDAFVVKKHGEELDLTHREFELLHHLATHIGQVMTREHLLETVWG- 188 Query: 181 FDEAVEENVVESHISKLRKKLRN 203 +D + V+ I +LR+K+ + Sbjct: 189 YDYFGDVRTVDVTIRRLREKIED 211 >gi|226304507|ref|YP_002764465.1| OmpR family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183622|dbj|BAH31726.1| putative OmpR family two-component response regulator [Rhodococcus erythropolis PR4] Length = 224 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 99/223 (44%), Gaps = 34/223 (15%) Query: 8 RALVKDGYIA---LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 R LV +G++ L GDDG ++ S DV ++ L GK ++ Sbjct: 18 RGLVAEGFVTAVELNGDDGFAI------------ACSDEFDVIVLDIMLPGK--HGYDIV 63 Query: 65 RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----- 118 R +RA P++ +S D FD G DD + KP LAR+ A+ RR Sbjct: 64 RDLRARGVWTPILMLSAKDGEYDLADAFDLGADDYLVKPFSFVVFLARLRALVRRGAPQR 123 Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 L V + + +V G + L RE +LE+LM N G V KT+I Sbjct: 124 PSILTVGDLSLDPAKHQVIRAGIE-------LTLTPREYSVLEFLMRNNGVVVTKTEIVR 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +++ E +EN+VE +I LRKK+ G +++ R +GY Sbjct: 177 SVWDTNYEG-DENIVEVYIGYLRKKVDLPFGTHSIETIRGIGY 218 >gi|182419686|ref|ZP_02950927.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237665577|ref|ZP_04525565.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376423|gb|EDT74004.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237658524|gb|EEP56076.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 229 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 15/209 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD V + +DG+ ++ + EE L+ +E+V + L+ Sbjct: 4 ILICDDNEAVHETIGTYLKNDGMIY--ISAFDGEEALEKFKKENVDLVILDLMMPKIFGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S+VP+I ++ + + G DD + KP RE++AR+ I+RR+ Sbjct: 62 EVCKEIRKISEVPIIMLTAKGEEIDKIIGLEIGADDYIVKPFSPREVVARIKTIFRRV-- 119 Query: 122 SNNRAETGPIR-VFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N++++ P R +FS D + + GE + +E IL + N G+ +++ + Sbjct: 120 -NSKSDLLPNRKIFSYENLNIDLDKYETVINGEKIDITPKECEILYLIATNEGRVLSREE 178 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I ++G +D + VV++ I +LRKKL Sbjct: 179 ILDKVWG-YDYFGDTRVVDTQIKRLRKKL 206 >gi|323351831|ref|ZP_08087482.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|322121888|gb|EFX93620.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|325689949|gb|EGD31953.1| DNA-binding response regulator [Streptococcus sanguinis SK115] Length = 218 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 7/160 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR SQ+P++ ++ T L F+ + D V KP ++ R+ I RR Sbjct: 61 LEVLKEIRKTSQIPVMILTALDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRNT 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V++ A G + V D QGE PL ++E IL+ L +G V + Q+ + I+G Sbjct: 121 VASEIA-VGDLTVSIDDCTVYWQGEKMPLTKKEYEILQTLAKRKGHLVTRDQLMTTIWGY 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ V+++HI +RKK+ P+ + +GY + Sbjct: 180 SE--LDSRVLDNHIKNIRKKIPGV----PLKTITGMGYQL 213 >gi|315652037|ref|ZP_07905038.1| transcriptional regulator FeuP [Eubacterium saburreum DSM 3986] gi|315485684|gb|EFU76065.1| transcriptional regulator FeuP [Eubacterium saburreum DSM 3986] Length = 220 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 10/167 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL+ R A S+V ++ D +L + D G +D + KP H +E+ AR+ A++ Sbjct: 59 GLEVLKAIREDDADSKVIILSARD--TLNDKVLGLDLGANDYLVKPFHFKELEARIRALF 116 Query: 117 RRLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R N+ R ++ I + + + E GEV L +E I EYL N+G+ V+ ++ Sbjct: 117 RTSYNKNDDCIRLDSQNIILCLNKKQVEKDGEVISLTPKEYAIFEYLCLNKGRLVSAGEL 176 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ HI+ +R+ KLG D + + R +GY++ Sbjct: 177 LEHNIDMNGNDA-SNVIKVHIAAIRR----KLGSDAIKTNRGMGYTV 218 >gi|56962979|ref|YP_174706.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909218|dbj|BAD63745.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 220 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 12/164 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L IR P++ ++ ++ F SG DD ++KP RE+ ARV A RR Sbjct: 60 FDLCEKIRPIVDCPILFLTAKAEEAAVVEGFTSGGDDYISKPFSIRELSARVNAHLRR-- 117 Query: 121 VSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 NR + RV S D ++ + + L + E +I +L N+G+ ++ QI+ Sbjct: 118 --ENREKHHTKRVISGFVFDFDNKEVHINNQKLNLTKNEYKICAFLAQNKGRTFSRDQIY 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 IYGL A+ + E I +RKK + DP+ + +GY Sbjct: 176 DEIYGLDGNALHGTITE-FIRTIRKKCKEH-EVDPIKTVWGIGY 217 >gi|306845545|ref|ZP_07478114.1| DNA-binding response regulator [Brucella sp. BO1] gi|306273866|gb|EFM55693.1| DNA-binding response regulator [Brucella sp. BO1] Length = 225 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 6/151 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETG 129 P+I ++ + + ++G DD + KP E+ AR+ A+ RR + N E G Sbjct: 71 CSTPVIILTALDQISDRIQGLNAGADDYLTKPFDLSELSARLNAVARRYSGNPNPLIEIG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 +++ + G L RE +LE + + G+ ++K Q+ +Y FD VE N Sbjct: 131 GLQIDLAVKSVMRDGRALCLTAREWALLEAFLQHPGQTLSKAQLEEHLYS-FDTEVESNT 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E H+S+LRK KLG +++ R +GY + Sbjct: 190 MEVHVSRLRK----KLGHAIIETVRGIGYRL 216 >gi|300714596|ref|YP_003739399.1| two-component system response regulator [Erwinia billingiae Eb661] gi|299060432|emb|CAX57539.1| Two-component system response regulator [Erwinia billingiae Eb661] Length = 220 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 5/205 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D L+ DG A G S++ F E +E L + + A+ L G L Sbjct: 3 ILVIEDDRLIGDGIKAGLIKMGFSVDWFT--EGKEGLAALSAAPYDAVVLDLSLPGMDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R R Q P++ ++ +L+ + G DD + KP E+ AR+ A+ RR Sbjct: 61 DILRQWRQQGQDEPVLILTARDALEQRVTGLQQGADDYLCKPFALSEVAARLQALIRRRH 120 Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + + S + GE L RE +LE + N G+ + + Q+ +Y Sbjct: 121 GQLHPLLSHGAVVMESGSHRVTLNGEPLELKSRELALLELFLMNTGRVLTRAQLEEKLYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +DE V N VE HI LRKKL ++ Sbjct: 181 -WDEDVSSNAVEVHIHHLRKKLGSQ 204 >gi|229494312|ref|ZP_04388075.1| transcriptional activator protein CopR [Rhodococcus erythropolis SK121] gi|229318674|gb|EEN84532.1| transcriptional activator protein CopR [Rhodococcus erythropolis SK121] Length = 225 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 67/223 (30%), Positives = 102/223 (45%), Gaps = 34/223 (15%) Query: 8 RALVKDGYIA---LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 R LV +G++ L GDDG F + +E+ DV ++ L GK ++ Sbjct: 19 RGLVAEGFVTAVELNGDDG-----FATACSDEF-------DVIVLDIMLPGK--HGYDIV 64 Query: 65 RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----- 118 R +RA P++ +S D FD G DD + KP +LAR+ A+ RR Sbjct: 65 RDLRAREIWTPILMLSAKDGEYDLADAFDLGADDYLVKPFSFVVLLARLRALVRRGAPQR 124 Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 L V + + +V G + L RE +LE+LM N G V KT+I Sbjct: 125 PAILSVGDLSLDPAKHQVSRAGIE-------LTLTPREYSVLEFLMRNNGVVVTKTEIVR 177 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +++ E +EN+VE +I LRKKL G +++ R +GY Sbjct: 178 SVWDTNYEG-DENIVEVYIGYLRKKLDLPFGTQSIETVRGVGY 219 >gi|254453719|ref|ZP_05067156.1| response regulator protein [Octadecabacter antarcticus 238] gi|198268125|gb|EDY92395.1| response regulator protein [Octadecabacter antarcticus 238] Length = 200 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 6/170 (3%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G L+ R + P+I ++ + + D G DD V KP H E+ AR A Sbjct: 36 GDGRSFLKQHRA--GKNDTPVIILTARSEVSDRISLLDLGADDYVTKPFDHAELQARCRA 93 Query: 115 IYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR S + G + G V+ V L RE R+LE LM +G+ K ++ Sbjct: 94 VLRRKAGTSQTTIKVGDVEFDPVGGYLTVKENVINLRNRELRLLEILMNAKGQVFPKQKL 153 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ +D+ V EN VE ++ +LR+ L + + R LGY +D + Sbjct: 154 VDRLFS-YDDDVSENAVEVYVGRLRRHLEGS--SVQITTLRGLGYRLDHD 200 >gi|167767696|ref|ZP_02439749.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1] gi|317499122|ref|ZP_07957400.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167710713|gb|EDS21292.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1] gi|316893591|gb|EFV15795.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 226 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 7/227 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGK-GE 58 M +++D +++ G GF N EF + L + ++ ++ L G+ G Sbjct: 1 MIFVVEDDPNIRELVTYTLQSTGFDACGFENGSEFLKALSDGEKPELVLLDIMLPGEDGI 60 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +L R A +P+I ++ + + DSG DD + KP E+++RV A+ RR Sbjct: 61 SILGKLRKKSATRDLPIIMMTAKGTEYDKVLGLDSGADDYITKPFGMMELVSRVKAVLRR 120 Query: 119 LKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + E G ++++ + + G L +E ++L L+ ++G + + Q+ + Sbjct: 121 SSRNEKKDEIIVGQLKIYPNKHKVKSCGNEVTLTNKEFKLLCLLVESKGNVLNRDQLLTN 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 I+G +D E V+ HI LR+KL + G +++ R +GY I N Sbjct: 181 IWG-YDFDGETRTVDVHIRSLRQKL-GECG-KLIETVRGIGYRIGGN 224 >gi|152977169|ref|YP_001376686.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025921|gb|ABS23691.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 231 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 86/165 (52%), Gaps = 11/165 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 65 RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S E +++F + + + E L ++E + E L+A + ++ + +A++ Sbjct: 125 PNISERIVEVEGLKLFPERPEMHFKAEQVLLTKKEAILAEMLLAKFPRTASREDLLAALW 184 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 DE+ VEEN + +I++LRKK N+LG + +++ R LGY ++ Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIQNGIETVRGLGYRLN 226 >gi|148270266|ref|YP_001244726.1| two component transcriptional regulator [Thermotoga petrophila RKU-1] gi|170288963|ref|YP_001739201.1| two component transcriptional regulator [Thermotoga sp. RQ2] gi|147735810|gb|ABQ47150.1| two component transcriptional regulator, winged helix family [Thermotoga petrophila RKU-1] gi|170176466|gb|ACB09518.1| two component transcriptional regulator, winged helix family [Thermotoga sp. RQ2] Length = 239 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 30/216 (13%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY L DG EE L+ + EDV ++ G EL R IRA Sbjct: 23 LSKEGYEVLKAYDG-----------EEALKIANDEDVDMFIVDIMLPGIDGFELVRKIRA 71 Query: 70 ---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 + P+I +S + + G DD + KP RE+LARV AI+RRL + Sbjct: 72 IEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRLSTATQSK 131 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRI---------LEYLMANRGKRVAKTQIFSAI 177 E P ++ + +D E+ E + + R +++ L +L N GK ++ + + Sbjct: 132 EERPKKIIA--KDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDVLLDKL 189 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +G +D + V+ HI +LR K+ DP + K Sbjct: 190 WG-YDYYGDTRTVDVHIRRLRTKIEE----DPSNPK 220 >gi|118443679|ref|YP_877073.1| transcriptional regulator [Clostridium novyi NT] gi|118134135|gb|ABK61179.1| transcriptional regulatory protein [Clostridium novyi NT] Length = 232 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 22/176 (12%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 L R IR + +P+I +S + D G DD + KP + E+LARV A RR Sbjct: 63 LVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYNKS 122 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K E G +R+ + + L E +IL YL+ N+GK K QIF Sbjct: 123 MSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKKQIF 182 Query: 175 SAI-----YGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223 + YG ++N + HIS LR K+ + +P + + R LGY +D N Sbjct: 183 EYVWEEPFYG------DDNAIMVHISNLRDKIEDD-SKNPHYIKTIRGLGYKLDSN 231 >gi|332361852|gb|EGJ39655.1| DNA-binding response regulator [Streptococcus sanguinis SK355] Length = 224 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 16/154 (10%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K + N G + Sbjct: 73 TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLSYGDV 132 Query: 132 RV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 V DG+D E+ G+ F L L Y + N+ + KTQIF ++G FD Sbjct: 133 TVNLSTNSTLKDGKDVELLGKEFDL-------LVYFLQNQNVILPKTQIFDRLWG-FDSD 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +VVE ++SK+RKKL+ + + R +GY Sbjct: 185 TTVSVVEVYVSKIRKKLKGTAFAKNLHTLRSVGY 218 >gi|300905846|ref|ZP_07123579.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|301301944|ref|ZP_07208078.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|300402315|gb|EFJ85853.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300842925|gb|EFK70685.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|315256926|gb|EFU36894.1| response regulator receiver domain protein [Escherichia coli MS 85-1] Length = 219 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 L---REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + D R + GE L +E +LE LM N G+ + + I +Y Sbjct: 120 NGQASNELRHGNVMLDPDKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|187780065|ref|ZP_02996538.1| hypothetical protein CLOSPO_03661 [Clostridium sporogenes ATCC 15579] gi|187773690|gb|EDU37492.1| hypothetical protein CLOSPO_03661 [Clostridium sporogenes ATCC 15579] Length = 230 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 76/138 (55%), Gaps = 4/138 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--N 124 IR S +P+I ++ S ++ D G DD + KP RE+++RV AI RR + N Sbjct: 67 IRKTSNIPIIFLTALDSEIDVVNGLDMGADDYITKPFRLRELISRVNAIIRRTSKDSDFN 126 Query: 125 RAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 ++ I + ++ + + + E+F L + E ++L+Y M N K ++K QI ++ + E Sbjct: 127 IIQSKDIVFYINEMKVEKYEKEIF-LSKTELKLLQYFMKNYQKILSKEQILENLWDIDGE 185 Query: 184 AVEENVVESHISKLRKKL 201 + EN V +I ++R+K+ Sbjct: 186 FINENTVAVNIRRIREKI 203 >gi|94495066|ref|ZP_01301647.1| DNA-binding response regulator [Sphingomonas sp. SKA58] gi|94425332|gb|EAT10352.1| DNA-binding response regulator [Sphingomonas sp. SKA58] Length = 224 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 4/149 (2%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIR 132 P++ ++ +++ + SG DD + KP E+ AR+ A+ RR K ++ G I+ Sbjct: 74 PILMLTSLGAIEDRVKGLASGADDYLVKPFAIAELSARLDALSRRGKSGLSDTGACGTIK 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVE 191 + R+ +G+ L RE +LE L+ + + V++ + ++ FD + N+VE Sbjct: 134 IDRVRREAWREGQRIVLQPREFELLEQLIRQQDQVVSRAMLLEQVWHFHFDP--QTNIVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +H+S+LR+KL DP+ + R +GY + Sbjct: 192 THMSRLRQKLNAGFDCDPIQTVRGVGYKL 220 >gi|33336059|gb|AAQ12900.1| response regulator protein [Enterococcus faecium] Length = 220 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 5/160 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R RA + P++ ++ + + FD+ DD V KP + +L RV A+ RR Sbjct: 63 ELLREFRAKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSGA 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + G PL R+E IL L+ N+G+ + I S I+G + Sbjct: 123 LAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + + V +HI LR KL + + + R +GY ++ Sbjct: 182 DFEGDGSTVHTHIKNLRAKLPENI----IKTIRGVGYRLE 217 >gi|229061164|ref|ZP_04198514.1| Two-component response regulator [Bacillus cereus AH603] gi|228718035|gb|EEL69675.1| Two-component response regulator [Bacillus cereus AH603] Length = 225 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 6/147 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 119 LKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 L VS N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 LGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 +G +D ++ V++HI KLR KL +K Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209 >gi|229916394|ref|YP_002885040.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229467823|gb|ACQ69595.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 233 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 19/140 (13%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFP 148 G DD + KP RE++ARV AI RR V + + G +++ + + QGE Sbjct: 96 GADDYLTKPFSPREVVARVKAILRRSAPQESAVEEDIIQIGDVKIVASNYEVFKQGERLE 155 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L +E +L YL N+G+ + + Q+ SAI+ +D + +V+ HIS LR+K+ + Sbjct: 156 LTPKEFELLAYLAKNKGRVLTRDQLLSAIWN-YDFVGDTRIVDVHISHLREKI------E 208 Query: 209 PVDSK-------RFLGYSID 221 PV K R LGY ++ Sbjct: 209 PVTKKPTYIKTIRGLGYKME 228 >gi|158336595|ref|YP_001517769.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158306836|gb|ABW28453.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 231 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 107/219 (48%), Gaps = 16/219 (7%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L ++ YI + DG G+ L+S + AI +L+ G ++L + + Sbjct: 18 RTLTQEAYIVDWAKDGREAWGY--------LESQWTQYTLAIFDWLL-PGLSGIDLCQRL 68 Query: 68 RAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125 RA S +P++ ++ + T D+G DD + KP E+LAR+ A+ RR + Sbjct: 69 RAQQSPLPVLMLTAKDQPEDTATGLDAGADDYLVKPFRKIELLARLRALQRRSPHFQPQQ 128 Query: 126 AETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + GP+ + + + QG+ L +E ++LEY M + + V++ QI + ++G Sbjct: 129 LQVGPLTLDYGTHNVSILNQEQGQSVLLTHKEFQLLEYFMQHPRQIVSRDQILNQLWGAE 188 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NVV + + +LR+KL D +++ +GY + Sbjct: 189 ADTI-SNVVAALMRQLRRKLAELGCDDAIETVYGVGYRL 226 >gi|148658560|ref|YP_001278765.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148570670|gb|ABQ92815.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 226 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 59/177 (33%), Positives = 86/177 (48%), Gaps = 29/177 (16%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 ++ R IR S VP+I +S LQ + G DD + KP E+LARV A+ RR Sbjct: 61 DVCRQIRRTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRRRNS 120 Query: 119 ------LKVSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 ++S P+ +F+DGR E+ PL E R+L YLM N G+ + Sbjct: 121 DMLNPSARLSLGDLTLDPVEHKVLFADGRIVELT----PL---EFRLLYYLMKNAGRVLN 173 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221 +QI S ++G +D E N+V +I +LR K+ DP V + R LGY + Sbjct: 174 TSQILSKVWG-YDYEGESNLVAVYIRRLRTKIER----DPEHPRHVLTVRNLGYKFE 225 >gi|89897063|ref|YP_520550.1| hypothetical protein DSY4317 [Desulfitobacterium hafniense Y51] gi|219667066|ref|YP_002457501.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89336511|dbj|BAE86106.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219537326|gb|ACL19065.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 227 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 76/144 (52%), Gaps = 2/144 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 E+ R+++ V +I ++ ++ + G DD + KP E+LAR+ A I + Sbjct: 67 EVCRMLKKSENVSIIMLTAKDEVEDRVKGLTIGADDYMAKPFSFEELLARIHARIRNQFP 126 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 GP R+ ++ + Q +V L E +L++L+ N+G ++KT I ++G Sbjct: 127 TLLGEVVMGPFRLDDRRKEIQFQDKVLELSPTEYELLKFLILNQGLVLSKTMILDKVWG- 185 Query: 181 FDEAVEENVVESHISKLRKKLRNK 204 +D A ++N+VE +I LR+KL +K Sbjct: 186 YDFAGDDNIVEVYIRSLREKLGDK 209 >gi|226314802|ref|YP_002774698.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226097752|dbj|BAH46194.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 231 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 87/164 (53%), Gaps = 5/164 (3%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LEL IRA + Q P++ ++ ++ + + G DD + KP E+ AR+ A+ RR+ Sbjct: 60 LELCEEIRASNDQTPILMLTARDAIDDRVTGLNRGADDYLIKPFAFEELFARIHALTRRI 119 Query: 120 KVSNNRAETGPIR-VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 VS ++ +T + D EV +G++ L ++E ++L++ + + K + + QI + Sbjct: 120 PVSMHQEQTCEYAGITLDRLTHEVYREGQLLTLTKKEFQLLDFFLRHTEKVLTRDQIVNY 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++GL D + N V++ I LRKK+ + + R +GY + Sbjct: 180 VWGL-DATITPNAVDAAIKLLRKKVDEGFSHKLIHNVRGVGYRL 222 >gi|83591864|ref|YP_425616.1| two component transcriptional regulator / cell cycle transcriptional regulator CtrA [Rhodospirillum rubrum ATCC 11170] gi|83574778|gb|ABC21329.1| two component transcriptional regulator, winged helix family / cell cycle transcriptional regulator CtrA [Rhodospirillum rubrum ATCC 11170] Length = 239 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 3/148 (2%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 +E+ R +RA P++ +S + G DD + KP E++AR+ AI RR Sbjct: 60 IEVIRHLRASRINTPVLILSGLNESDRKVKGLGVGADDYLTKPFDKSELIARLQAIVRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + S + G + V D R V G+ L +E ILE L +G + K Q + +Y Sbjct: 120 MGHSQSVVTVGQMEVNLDARTVSVAGDPVHLTGKEYGILELLTLRKGSTLTKEQFLNHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG 206 G DE E +++ I KLRKKL G Sbjct: 180 GGMDEP-ELKIIDVFICKLRKKLAQATG 206 >gi|326382019|ref|ZP_08203712.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326199445|gb|EGD56626.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 233 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 9/151 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDF---FDSGVDDVVNKPIHHREILARVA 113 G LE+ R R S++P + + + +DF D+G DD V KP E+LARV Sbjct: 63 GMDGLEVCR--RVRSELPQLPVLMLTARTDEVDFVVGLDAGADDYVGKPFRLAELLARVR 120 Query: 114 AIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 A+ RR + + E G IR+ S R V GE L RE +L +LM G+ V++ Sbjct: 121 ALMRRSVAAVDEEEVLDIGGIRLDSRARRVVVDGEDLTLANREFDLLRFLMERAGEVVSR 180 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 I +A++G D ++ HIS +R+K+ Sbjct: 181 DDIMTAVWGSTD-LRSSKTLDMHISWIRRKI 210 >gi|90414398|ref|ZP_01222375.1| putative DNA-binding response regulator [Photobacterium profundum 3TCK] gi|90324511|gb|EAS41067.1| putative DNA-binding response regulator [Photobacterium profundum 3TCK] Length = 219 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 22/219 (10%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L +G+IA DG+ + E W DV ++ L K + + L I Sbjct: 19 GLESNGWIAELSSDGI--DALYRATSEPW-------DVIVLDLGL-PKLDGLTVLKSIRD 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 + P++ +S L ++ ++G DD + KP E++AR+ A RR + N + Sbjct: 69 ENVNTPVVILSARNELTQRVEGLNAGADDYLTKPFQMVELIARLRAQLRR--STGNASPV 126 Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 ++ S D R V QG+V L E ++L YLM N K +++T++ IY FD Sbjct: 127 IQVQELSLDTRTSNVLWQGQVVDLTALEFKVLSYLMHNTDKVISRTELVEHIYKQDFDR- 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + N +E I ++R+ K+G D + + R LGY I+ N Sbjct: 186 -DSNTIEVFIGRIRR----KIGNDVIKTVRGLGYRINAN 219 >gi|298243491|ref|ZP_06967298.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297556545|gb|EFH90409.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 253 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 7/137 (5%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS----NNRAE 127 ++PLI ++ +++ L F+ G DD + KP +H+E++ARV A+ RR+K S N Sbjct: 98 EIPLIFMTAQDTIEAKLQGFNIGADDYICKPYNHQELVARVQAVLRRIKKSGKTGNQSIR 157 Query: 128 TGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G I +F V G + L E +L LM + G+ V + Q+ + ++ D Sbjct: 158 GGQIELFPAELKVAVTGKQPVTLTPTEMHVLRVLMHSAGQVVNRDQLLAEVWN--DNENN 215 Query: 187 ENVVESHISKLRKKLRN 203 N+V+ +I +LR KL + Sbjct: 216 SNIVDVYIRRLRVKLED 232 >gi|260439186|ref|ZP_05793002.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM 2876] gi|292808388|gb|EFF67593.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM 2876] Length = 223 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127 A Q+P++ I+ S F SG DD + KP++ E++ RV A+ RR ++ N ++ Sbjct: 70 AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 129 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G D E LP++E +L L A+ G+ K Q+ ++G EA + Sbjct: 130 IGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYETEA-DP 188 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +E HI ++R++ ++ F+ V + R +GY + Sbjct: 189 HTIEVHIGRIRERFKDNPDFEIV-TMRGIGYKV 220 >gi|209517909|ref|ZP_03266742.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209501625|gb|EEA01648.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 225 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + P++ ++ S+ ++ +G DD + KP RE++AR+ RR S Sbjct: 63 LRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQSPS 122 Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + D R ++G + RER +LE L+ GK V K + AI+ L Sbjct: 123 KAGEVVCGDLSFDIDTRQFTLKGAPLNVTPRERSVLEALILRLGKTVTKPALVDAIFTLA 182 Query: 182 DEAVEENVVESHISKLRKKL 201 DE E+ VE +IS+LRKKL Sbjct: 183 DEP-SEDAVEIYISRLRKKL 201 >gi|323351770|ref|ZP_08087424.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|322122256|gb|EFX93982.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] Length = 224 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 16/154 (10%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K + N G + Sbjct: 73 TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLSYGDV 132 Query: 132 RV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 V DG+D E+ G+ F L L Y + N+ + KTQIF ++G FD Sbjct: 133 TVNLSTNSTLKDGKDVELLGKEFDL-------LVYFLQNQNVILPKTQIFDRLWG-FDSD 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +VVE ++SK+RKKL+ + + R +GY Sbjct: 185 TTVSVVEVYVSKIRKKLKGTAFAKNLHTLRSVGY 218 >gi|307131191|ref|YP_003883207.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Dickeya dadantii 3937] gi|306528720|gb|ADM98650.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Dickeya dadantii 3937] Length = 222 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 3/156 (1%) Query: 68 RAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNR 125 RAH ++P++ ++ S Q + ++G DD V KP H E++AR+ A+ RR +++ Sbjct: 67 RAHQVKLPILVLTARESWQEKVAVLEAGADDYVTKPFHIEEVVARMQALMRRNSGLASQI 126 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 P V R+ V G+ L E I+E L+ N GK V+K + +Y E Sbjct: 127 ISLPPFEVDLSRRELLVHGDPVKLTAFEYTIIETLIRNNGKVVSKESLMLQLYP-DAELR 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E + ++ + +LRKKL+ D + + R GY D Sbjct: 186 ESHTIDVLMGRLRKKLQTANSHDVITTVRGQGYRFD 221 >gi|241205230|ref|YP_002976326.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859120|gb|ACS56787.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 223 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 12/168 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE + +P + R P+I ++ + ++ D G DD + KP E++AR+ A+ Sbjct: 57 GEGLSFIPDLRRTGKDTPIIVLTALNEPKERIEGLDLGADDYLGKPFLVEELMARLRAVL 116 Query: 117 RR------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR LK++ R P+ + V LPRRE +L L K V + Sbjct: 117 RRSPELAELKITAGRMVIDPLHL-----SVTVDAVPLDLPRRELLVLAALARRNEKTVLR 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + +A+Y ++E ++ N +++HIS+LRK+L + + + R +GY Sbjct: 172 STLEAAVYN-YEEEIQSNALDAHISRLRKRLIDAGAGVAIHNIRGVGY 218 >gi|294139946|ref|YP_003555924.1| DNA-binding response regulator [Shewanella violacea DSS12] gi|293326415|dbj|BAJ01146.1| DNA-binding response regulator [Shewanella violacea DSS12] Length = 237 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 6/150 (4%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIR 132 P++ ++ S Q + D+G DD + KP H +E++AR+ A+ RR ++ GP Sbjct: 74 PILILTARDSWQDKVAGLDAGADDYLTKPFHPQELIARLNALIRRSAGKASPLVHNGPFS 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + + + + G + L E ++ E+ M + G+ +KT + IY D ++ NV+E Sbjct: 134 INTSTLEVKKSGHLMSLSSSEYKLFEFFMLHLGEVKSKTVLIEHIYDQ-DFDLDSNVIEV 192 Query: 193 HISKLRKKL--RNKLGFDPVDSKRFLGYSI 220 I +LRKKL N+LG +++ R GY + Sbjct: 193 FIRRLRKKLDPDNQLGL--IETLRGQGYRL 220 >gi|284052127|ref|ZP_06382337.1| two component transcriptional regulator, winged helix family protein [Arthrospira platensis str. Paraca] Length = 227 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 79/147 (53%), Gaps = 6/147 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ +R+ ++ P++ ++ +L + D+G DD + KP RE+LARV A+ RR Sbjct: 60 LEICAQLRSQQNRTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRRP 119 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V++NR + G ++ + + + L +E ++LEYLM + G+ + T+I Sbjct: 120 PILDSTVTSNRLQFGDLQFDCETQLAYRGQKAIELSEKESQLLEYLMRHPGQLLTHTEIH 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++G D+ NV+ + I LR+K+ Sbjct: 180 QHLWGETDKKPSSNVLAAQIRLLRRKI 206 >gi|94501865|ref|ZP_01308376.1| hypothetical protein RED65_02198 [Oceanobacter sp. RED65] gi|94425998|gb|EAT10995.1| hypothetical protein RED65_02198 [Oceanobacter sp. RED65] Length = 221 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 2/136 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125 +R S P++ ++ ++ + D G DD + KP E+LAR+ A+ RR + S+N Sbjct: 66 VRKKSATPVMILTARDQIEDKIKGLDLGADDYMPKPFDVNELLARMRALLRRSVGESSNN 125 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + + R + L RRE +LE L ++ K + ++Q+ ++Y +D+ + Sbjct: 126 ITVQGLNINLQARTLSFENRDISLSRREFNLLEALATHQDKVMTRSQLEHSLYS-WDDEI 184 Query: 186 EENVVESHISKLRKKL 201 E N +E HI LRKKL Sbjct: 185 ESNALEVHIHNLRKKL 200 >gi|319793239|ref|YP_004154879.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315595702|gb|ADU36768.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 219 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA Q +P++ + S+Q ++ D+G DD V KP E+LAR+ A+ RR Sbjct: 60 LEVLRSLRARKQRMPVLIATARDSVQQRIEGLDAGADDYVLKPYDLDELLARIRALLRR- 118 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + RAE + + R+ V G+ L RE ++E L+A G +++ Q+ Sbjct: 119 --AAGRAEPVYEHMGVSINPATREVTVAGQPVVLSAREWAVIEPLLARPGMVLSRAQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y DE + N VE ++ LRK KLG + + + R +GY + Sbjct: 177 KLYSWKDE-ISSNAVEVYVHGLRK----KLGAEFIRNVRGVGYMV 216 >gi|302529718|ref|ZP_07282060.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302438613|gb|EFL10429.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 238 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 12/151 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G L + R IRA S +P++ ++ + L D G DD V KP RE++ARV + Sbjct: 67 GMNGLTVCRTIRASSDLPILMLTARSTEDDLLQGLDLGADDYVTKPYSPRELMARVRTLL 126 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRV-AK 170 RR N A+ GP+ V + D E V G E RILE +MA+R +V + Sbjct: 127 RR----TNAAKDGPLTVGALTVDKEKHEVAVGGNRIETTPGEFRILE-VMASRPDQVFTR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q+ ++G FD + + ++ H+ LRKK+ Sbjct: 182 AQLLEHLHG-FDRYITQRAIDVHVMNLRKKI 211 >gi|254292716|ref|YP_003058739.1| two component transcriptional regulator PhoB, winged helix family [Hirschia baltica ATCC 49814] gi|254041247|gb|ACT58042.1| two component transcriptional regulator PhoB, winged helix family [Hirschia baltica ATCC 49814] Length = 248 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 86/166 (51%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R +R+ +P+I ++ + D+G DD + KP E+ AR+ A+ R Sbjct: 80 IEVCRRLRSRDTTGNLPIIMLTARTEEADRIRGLDTGADDYIVKPFSMTELKARIRAVMR 139 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R++ ++ ++ G + V G+ L E R+L+YL+ + G+ ++ ++ Sbjct: 140 RIRPGLTEDKVVVGDLEVDRTAHKVARAGQQVHLGPTEFRLLDYLIQHPGRVFSRERLLD 199 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++G D VE V+ H+ +LRK L+ + DP+ + R GY+++ Sbjct: 200 AVWG-SDIYVEARTVDVHVGRLRKALKMEGLVDPIRTVRSAGYALN 244 >gi|302876257|ref|YP_003844890.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307686989|ref|ZP_07629435.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302579114|gb|ADL53126.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 225 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 19/168 (11%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 L ++ A P++ ++ S+ + F G DD + KP H E+L R+ AI RR Sbjct: 62 LGKLREASVFTPVLILTAKDSIDDKIKGFKLGADDYLVKPFHREELLLRLEAIIRRNGNH 121 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 L + T VF + + +QG+ F ILEYL+ N+G + K QI Sbjct: 122 LKDHVLTFKDLSLNTKNKTVFINDSEIFLQGKQFD-------ILEYLLNNQGAILTKEQI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 F I+G F+ +VVE + S LRK L+ G+D + + R LGY + Sbjct: 175 FDRIWG-FNSDTTVSVVEVYASNLRKSLKAH-GYDKYIKTVRGLGYML 220 >gi|76788510|ref|YP_330411.1| DNA-binding response regulator DltR [Streptococcus agalactiae A909] gi|76563567|gb|ABA46151.1| DNA-binding response regulator DltR [Streptococcus agalactiae A909] Length = 224 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 4/161 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L R+ A + P+I ++ ++ D G DD + KP E+LAR+ R+ + Sbjct: 63 LKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSSLI 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ G IR+ +D + E + L +E ++E M N + + K Q+ S ++G Sbjct: 123 RANQLRLGNIRLNTDSHELESKESSVKLSNKEFLLMEVFMRNAKQIIPKNQLISKVWGPS 182 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 D + E N +E IS LRKKLR K + + +K F GYS++ Sbjct: 183 DNS-EYNQLEVFISFLRKKLRFLKADIEIITTKGF-GYSLE 221 >gi|323525907|ref|YP_004228060.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323382909|gb|ADX55000.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 219 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 86/163 (52%), Gaps = 7/163 (4%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +EL R +R A VP++ ++ ++ + ++G DD + KP E++AR A+ RR Sbjct: 60 MELLRRLRDAGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELIARCRALLRRA 119 Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + S + + V + EV G+ L RE IL L+ N+G +++++ ++Y Sbjct: 120 QGRSVDVIRYRELSVNPAAQAVEVAGKRVSLTSREWAILMQLLTNQGIPQSRSRLEESLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G + E +E N +E H+S LRK KLG + + R +GY ++ Sbjct: 180 G-WQEEIESNAIEVHVSNLRK----KLGAHLIRTVRNIGYVVE 217 >gi|254302887|ref|ZP_04970245.1| OmpR family response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323079|gb|EDK88329.1| OmpR family response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 224 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 7/176 (3%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 DV ++ L K K E+ R +R P+I I+ S+ ++ D G +D + KP Sbjct: 47 DVVLLDLMLPKKSGK--EVCRELRKLGDAPIIVITAKDSVLDKVELLDLGANDYICKPFA 104 Query: 105 HREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LAR+ + R + SNN+ I++ + + L + E ILEY M Sbjct: 105 MEELLARIRVVTRNKENSNNKHFYIENEIKMDISAKKVFLNEVEISLTKTEFLILEYFMK 164 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 N+G ++ +I ++G +D EE +V+ +I+ LRKK+ K + + + R GY Sbjct: 165 NKGLSCSREKIIVGVWG-YDFDGEEKIVDVYINSLRKKIDPKSNY--IHTIRGFGY 217 >gi|74197595|emb|CAJ29527.1| two-component system response regulator [uncultured Aeromonas sp.] Length = 229 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 59/235 (25%), Positives = 108/235 (45%), Gaps = 37/235 (15%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV- 60 +L++D ++ DG + G +++ WLQ + A + K E+ Sbjct: 3 ILLVEDDVMLGDGMVDALRSSGYTVD---------WLQQ-------GLPALSVLKSEEFA 46 Query: 61 -----LELP---------RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106 L LP ++ R +P++ ++ +L + D+G DD + KP + Sbjct: 47 ALILDLNLPDIDGISLLRKLRREGQTLPVLILTARDALDDRVLGLDAGSDDYMVKPFALQ 106 Query: 107 EILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 E+ AR+ A+ RR K E ++++ + + +GE L E ++L+ L+ G Sbjct: 107 ELNARLRALVRRSKGQAQAVLEYEELQLYPESQQVTYRGEPVKLTPHEYKLLQELITQSG 166 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++K Q+ ++YG +DE E N VE HI LRKK + D + + R +GY I Sbjct: 167 RVLSKDQLQQSLYG-WDEGAESNAVEVHIHHLRKKFYS----DLIRNIRGVGYII 216 >gi|134298200|ref|YP_001111696.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134050900|gb|ABO48871.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 227 Score = 64.7 bits (156), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 7/165 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 E+ R+++ V +I ++ + + + G DD + KP E+LAR+ A I + Sbjct: 67 EVCRMLKKTENVAVIMLTARDEVDDRVKGLNLGADDYMVKPFSFEELLARIYARIRNQFP 126 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP ++ D R E+Q E V L E +L++L+ N G ++KT I ++ Sbjct: 127 NLFGKVVVGPFQI--DDRRKEIQFENRVLELSHTEYELLKFLVLNHGLVLSKTMILDKVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 G +D EEN+VE +I LR KL +K + + R GY +D + Sbjct: 185 G-YDFGGEENIVEVYIRSLRDKLNDK-NHQIIRTLRRSGYRVDLS 227 >gi|328542159|ref|YP_004302268.1| Two component transcriptional regulator, winged helix family [polymorphum gilvum SL003B-26A1] gi|326411909|gb|ADZ68972.1| Two component transcriptional regulator, winged helix family [Polymorphum gilvum SL003B-26A1] Length = 223 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 8/218 (3%) Query: 6 DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65 D+R L + AL D G +++ N+ E + ++ D++ ++ L G L++ R Sbjct: 8 DNRNLCRGIENALL-DQGHAVDVLNNGEDADRFLATQGADLAIVDVNL--PGMSGLQVVR 64 Query: 66 IIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 +R S +P++ ++ + D+G DD + KP E+LAR+ A+ RR + Sbjct: 65 NLRLRKSAMPVLILTARGDTGDKVAGLDAGADDYLVKPFDMAELLARIRALSRRRQTLKP 124 Query: 125 RAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E G + R LPRRE + E L+ N G+ V K I +YG + Sbjct: 125 VEEVIGSLTYNRAARKLCGTRGTLDLPRREMALFECLLDNAGRVVTKETIAETLYGSGSD 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E N VE +S+LR+KL + G + + + R LGY +D Sbjct: 185 -IEPNAVELLVSRLRRKLHDT-GVE-IRTARGLGYLLD 219 >gi|307265851|ref|ZP_07547401.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919126|gb|EFN49350.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 229 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 16/207 (7%) Query: 29 FNSLEFEE--WLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPL 75 F LEFE + + + VS ++ L G + VL E+ + IR HS +P+ Sbjct: 17 FLQLEFEHEGYTVTVTYDGVSGLKEALEGDYDLVLLDIMLPGIDGFEVLKKIREHSDIPV 76 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS 135 I ++ ++ ++ D G DD V KP E+ ARV A R+ K + + Sbjct: 77 IMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRKKKPHLKKDVLKYSDIIM 136 Query: 136 DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D EV+ G L ++E +LEYL+ N + + +I ++G +D + N+V+ + Sbjct: 137 DLTTHEVRRAGIKIELTKKEFDLLEYLIKNANIALTREKILEGVWG-YDYYGDTNIVDVY 195 Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I LR K+ + + + R +GY++ Sbjct: 196 IRYLRSKIDDPFDRKLIHTIRGVGYTL 222 >gi|300854069|ref|YP_003779053.1| putative response regulator [Clostridium ljungdahlii DSM 13528] gi|300434184|gb|ADK13951.1| predicted response regulator (CheY-like receiver domain and HTH DNA-binding domain) [Clostridium ljungdahlii DSM 13528] Length = 226 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 18/190 (9%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74 Y A G +G+ L FN +EF+ + D+ GE+V IR S V Sbjct: 29 YCATTGLEGIRL--FNKIEFKLVILDLMLPDID---------GEEVCS---TIRRISNVH 74 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR---AETGPI 131 + ++ +L L + G D+ + KP RE+ ARV A++RRL + + G + Sbjct: 75 IFMLTAKVTLSDKLQGLNIGADEYLTKPCSPRELTARVNALFRRLSSAEEPEIISRDGLL 134 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + D R +++GE + E IL L NRG+ +++ Q+ ++G+ D + ++ Sbjct: 135 VINHDKRCVKLKGEEIAMTPNEFNILYVLAKNRGRVLSRDQLIEQVFGI-DFEGSDRTID 193 Query: 192 SHISKLRKKL 201 HI +RKK+ Sbjct: 194 VHIKNIRKKI 203 >gi|271500465|ref|YP_003333490.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270344020|gb|ACZ76785.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 222 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 3/156 (1%) Query: 68 RAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNR 125 R+H ++P++ ++ S Q + ++G DD V KP H E++AR+ A+ RR +++ Sbjct: 67 RSHQVKLPILVLTARESWQEKVAVLEAGADDYVTKPFHIEEVVARMQALMRRNSGLASQI 126 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 P V R+ V GE L E I+E L+ N GK V+K + +Y E Sbjct: 127 ISLPPFEVDLSRRELLVHGEPVKLTAFEYTIVETLIRNNGKVVSKESLMLQLYP-DAELR 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E + ++ + +LRKKL++ D + + R GY D Sbjct: 186 ESHTIDVLMGRLRKKLQSANSHDVITTVRGQGYRFD 221 >gi|333030914|ref|ZP_08458975.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] gi|332741511|gb|EGJ71993.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] Length = 226 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 89/168 (52%), Gaps = 7/168 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G ++L+ R + ++ P++ +S + + + G DD ++KP H E++AR+ A+ Sbjct: 59 GIELLQYTRFKKINT--PILVVSALGDPEDKIKALNYGADDYLSKPFHFGELVARINALT 116 Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR + N A E I++ +G + L +E ++L+ LM N K +++T+ Sbjct: 117 RRSRSENTHASTLLECKGIQLNVTEHLVYKEGALIHLTLQEFKLLQLLMENLDKVLSRTE 176 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++++GL D N+V+ +IS LR K+ +K +++ + GY I Sbjct: 177 IINSVWGL-DYESNTNIVDVYISYLRNKIEDKSKAKIIETVQGRGYII 223 >gi|260219796|emb|CBA26687.1| Transcriptional regulatory protein qseB [Curvibacter putative symbiont of Hydra magnipapillata] Length = 222 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 9/177 (5%) Query: 47 SAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH 105 + ++ L GK G +VL+ R R + P++ ++ ++ + D+G DD V KP+ Sbjct: 48 AVLDLGLPGKDGMEVLQALRAAR--NTTPVLVLTARDAVPDRIRGLDAGADDYVLKPVDL 105 Query: 106 REILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 E+ AR+ ++ RR V+ + + G + + R E PL RE +L LM + Sbjct: 106 HELAARLRSLVRRSHGVAQDMLQAGALSLDPSARQVTWMDEAVPLSTREFDLLHTLMRSA 165 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G+ +++ Q+ +Y E VE N +E HI LR+KL+ D + + R +GY ++ Sbjct: 166 GRVLSREQLEQQMYSWGLE-VESNTIEVHIHHLRRKLQA----DVIQTVRGVGYMLN 217 >gi|16760106|ref|NP_455723.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142123|ref|NP_805465.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052791|ref|ZP_03345669.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428093|ref|ZP_03360843.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|73621401|sp|Q8Z7H2|PHOP_SALTI RecName: Full=Virulence transcriptional regulatory protein phoP gi|25300977|pir||AH0646 transcription regulatory protein PhoP, regulator of virulence determinants STY1271 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502400|emb|CAD08355.1| transcriptional regulatory protein PhoP, regulator of virulence determinants [Salmonella enterica subsp. enterica serovar Typhi] gi|29137752|gb|AAO69314.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 224 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 5/218 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ ++ + D++ ++ L E L Sbjct: 5 LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 62 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R+ +P++ ++ Q ++ SG DD V KP H E++AR+ A+ RR Sbjct: 63 LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ V EV L E I+E L+ N GK V+K + +Y Sbjct: 123 LASQVINISPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E E + ++ + +LRKK++ + D + + R GY Sbjct: 182 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGY 219 >gi|325289243|ref|YP_004265424.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324964644|gb|ADY55423.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 228 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 1/138 (0%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S VP+I ++ + D G DD + KP + ARVAA RR Sbjct: 67 REIREISLVPVIFLTCMGGDGHIVTGLDRGGDDYIIKPYSFSVLQARVAAQLRRRGTVTG 126 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 P+++ + GE L R+E +L YL+ NRG+ +++ I+ A++ E Sbjct: 127 EISLPPLQINLTSGLVRLNGETIDLTRKEFLLLLYLVENRGQELSQAGIYEAVWSAPPET 186 Query: 185 VEENVVESHISKLRKKLR 202 + N V H+S+LR+KLR Sbjct: 187 M-GNTVRMHVSRLRQKLR 203 >gi|325104344|ref|YP_004273998.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] gi|324973192|gb|ADY52176.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] Length = 225 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 110/224 (49%), Gaps = 10/224 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++ DD L K+ AL +D + ++ + E+ L+ + + D ++ L GK Sbjct: 3 ILIIEDDPTLSKNICDALSENDIHTETVYDGILAEKMLRKN-QYDCIILDVNLPGKTG-- 59 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+L + R +++ P+I ++ + L + F++G DD + KP + RE+ RV ++ +R Sbjct: 60 LDLCKDFRQYNKYTPIIMLTAFGELDDKVAGFNAGADDYLTKPFYMRELSLRVNSLLKRS 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E I++ D ++ QG+ L RE +IL L++ RG+ V+K + Sbjct: 120 TTLGTNIEQDTIKIGDLIIDTKIKKVNRQGKDIILTPREFQILLKLVSCRGELVSKNDLI 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I+G V N +E I+ LRKK+ G + + +K GY Sbjct: 180 KEIWG-NSVDVNTNTIEVFINFLRKKIDKPFGQESIKTKVGYGY 222 >gi|239833816|ref|ZP_04682144.1| two component transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239821879|gb|EEQ93448.1| two component transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 222 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 4/149 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-G 129 ++VP+I ++ SL + D+G DD + KP E+ AR+ A RR T G Sbjct: 71 NEVPVIILTANASLDGRIRGLDAGADDYLAKPFELSELEARIRAHLRRASQRTAPVVTCG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 +R ++ R + E L +E +LE L+ G V+KT + IY FD +EN Sbjct: 131 LLRFDTNTRLFSIGDEPLSLAPKEHAVLEQLLRRIGTTVSKTALVQGIYN-FDSETDENA 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E +I +LRKKL + + R LGY Sbjct: 190 IEIYIHRLRKKLEGSRA--EIVTLRGLGY 216 >gi|229916056|ref|YP_002884702.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229467485|gb|ACQ69257.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 221 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 90/165 (54%), Gaps = 8/165 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R ++A +P+I ++ + F+ G DD V KP E+L R+ A+ RR + Sbjct: 61 ELCRRLKATLDIPVILLTALDEWEDKRQGFELGADDYVTKPFIPEELLFRLQAVSRRYQR 120 Query: 122 S-NNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S ++ + GP+R+ D R+ EV +G++F LP++E +L L + G+ + ++ ++ Sbjct: 121 SAASQIQAGPLRL--DLREYEVTLEGQLFYLPKKEFELLFQLASFPGRVYRREELIELVW 178 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 G FD +E V+ HI +LR + + + + R +GY+++ N Sbjct: 179 G-FDFEGDERTVDVHIKRLRNRFDHPAL--TIRTVRGVGYALEVN 220 >gi|172058186|ref|YP_001814646.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990707|gb|ACB61629.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 220 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 73/141 (51%), Gaps = 2/141 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R SQ P+I ++ + FD G+DD + KP R +L R+ A+ RR++ Sbjct: 62 EVAQQVRKTSQTPIIFLTALQDEDNQVKGFDLGIDDYIAKPFSLRILLRRIEAVIRRIRT 121 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ + I +F + + G L +E +IL L+ N G+ + + Q+ ++G Sbjct: 122 NDEEQLSFREITLFPASYNVLISGNAVILTLKEFQILHLLLENPGRVLEREQLIQQLWG- 180 Query: 181 FDEAVEENVVESHISKLRKKL 201 FD + +++HI LRKK+ Sbjct: 181 FDAFGDTRFLDTHIKNLRKKI 201 >gi|330836317|ref|YP_004410958.1| two component transcriptional regulator, winged helix family [Spirochaeta coccoides DSM 17374] gi|329748220|gb|AEC01576.1| two component transcriptional regulator, winged helix family [Spirochaeta coccoides DSM 17374] Length = 259 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 16/163 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +RA P+I ++ + + F+ G DD V KP +E++ RV AI+RRL+ + Sbjct: 67 LRATYSFPVIFVTSRGAESDRILGFELGADDYVVKPFSAKELVLRVRAIFRRLEGTTQLN 126 Query: 127 ETGPIRVFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 G V DG + G++ PL E RI+ YL++N G + + Q+ Sbjct: 127 RGGSSWVL-DGSVLLLDEVSHLFTIDGDLIPLTAAEWRIMSYLVSNAGILITRAQVLE-- 183 Query: 178 YGLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD + E + +V++HI +R KL LG +++ R GY Sbjct: 184 -NCFDYSFEFYDRIVDTHIKNIRSKL-GALGSQWIETVRGYGY 224 >gi|331699682|ref|YP_004335921.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954371|gb|AEA28068.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 260 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 101/220 (45%), Gaps = 19/220 (8%) Query: 3 VLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 +++DD A V+D G G ++L+G +L + DV ++ L G G Sbjct: 35 LVVDDDATVRDVVARYLGAAGHDVELALDGPGALRAAR----TTPPDVVVLDLMLPGLGG 90 Query: 59 KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ R +RA + P+I ++ L + G DD V KP RE++ RV +I R Sbjct: 91 --LEVCRALRADGDRPPIIMLTALGEEDDRLLGLELGADDYVTKPFSPRELVLRVGSILR 148 Query: 118 RLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R E G +RV R + G+ L RE +L +L+A+ G+ + ++ S Sbjct: 149 RTAAPATAPELVDGGLRVDPAARVASLDGQPLALTTREFDLLAFLLAHPGQAFTREELLS 208 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 ++G E + + V H+ +LR+K+ DP +R Sbjct: 209 RVWGW--EFGDRSTVTVHVRRLREKVEA----DPTAPRRI 242 >gi|237734987|ref|ZP_04565468.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229381763|gb|EEO31854.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 228 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 81/159 (50%), Gaps = 1/159 (0%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + +R S +P+I ++ S + G DD + KP + +L + A+++RL Sbjct: 70 QLLKKLREKSTIPVIMVTSKDSEIDEILALSYGADDYITKPYNPTILLLHIEAVFKRLHK 129 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + IRV E + L + E I YL+ N+GK V + I + ++G Sbjct: 130 AEPKLTYQNIRVNLMKSTLEKDDQELLLSKNEMGIFYYLLMNQGKIVTRDDIMNYLWG-T 188 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D+ +++N + ++++LRK+L FD ++++R GY + Sbjct: 189 DKFIDDNTLTVNMTRLRKRLEKIGLFDVIETRRDQGYML 227 >gi|117621514|ref|YP_855892.1| transcriptional regulatory protein PhoP [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562921|gb|ABK39869.1| transcriptional regulatory protein PhoP [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 235 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 4/160 (2%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L+L R +R P+I ++ + Q ++ ++G DD + KP E+LAR+ A+ RR Sbjct: 71 LQLIRQLREQQIPFPIIVLTARGNWQDKVEGLEAGADDYLVKPFQKDELLARLNALVRRS 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R + G + ++ + G L E ILEYLM N + V+K Q+ +Y Sbjct: 131 AGFISPRVKAGDYELDLSRKELTIAGTPVVLTSFEYLILEYLMRNARQVVSKQQLLDQLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G D + N +E +S+LRKKL + P+ + R GY Sbjct: 191 G--DGEGDPNTIEVMVSRLRKKLDPEGTIQPISTIRRQGY 228 >gi|92114714|ref|YP_574642.1| two component transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91797804|gb|ABE59943.1| two component transcriptional regulator, winged helix family [Chromohalobacter salexigens DSM 3043] Length = 233 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 15/224 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF-EEWLQSSAREDVSAIEAFLIGKGEKV 60 +L++D LV G A G +++ S+ LQ A + V G G + Sbjct: 3 VLLVEDDELVAAGIRAGLESHGWAVDTVASMAAARHALQVVASDIVVLDRGLRDGDGLTL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E R A +VP++ ++ ++ + D+G DD + KP E++AR+ A+ RR Sbjct: 63 VEEWR--EAGKRVPVLVLTARDAISDRIAGLDAGADDYLVKPFDLDELVARLHALLRR-- 118 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + RA G +R R +G L RRE +LE + + G ++ Q+ + Sbjct: 119 -AAGRAHPCIVHGALRFDPQARQVTWRGRPVTLSRRELVLLETFLQSPGSVLSANQLRDS 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YGL DE VE N + HI LR+K+ + +++ R LGY + Sbjct: 178 LYGLDDE-VESNALNVHIHHLRRKVAPAV----IETVRGLGYRL 216 >gi|238754408|ref|ZP_04615764.1| Two-component response regulator of virulence determinant [Yersinia ruckeri ATCC 29473] gi|238707441|gb|EEP99802.1| Two-component response regulator of virulence determinant [Yersinia ruckeri ATCC 29473] Length = 223 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 111/222 (50%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G ++ ++ E + +LQ A D++ I+ L GE L Sbjct: 4 LVVEDNALLRHHLSVQMREMGHQVDAAEDAKEADYFLQEHA-PDIAIIDLGL--PGEDGL 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R R H +++P++ ++ S Q + ++G DD V KP H E++AR+ A+ RR Sbjct: 61 SLIRRWRNHQAKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ E P + R+ V + L E I+E L+ N GK V+K + +Y Sbjct: 121 GLASQIIEFQPFMIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E + ++ + +LRKKL+ + D + + R GY D Sbjct: 181 -DAELRESHTIDVLMGRLRKKLQVEHDKDVITTIRGQGYRFD 221 >gi|126731908|ref|ZP_01747712.1| two component response regulator [Sagittula stellata E-37] gi|126707735|gb|EBA06797.1| two component response regulator [Sagittula stellata E-37] Length = 226 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 7/169 (4%) Query: 57 GEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G L L + +RA S +P+I ++ + +D +G DD + KP H E+LAR+ + Sbjct: 56 GMDGLSLVKALRAAKSNLPVIFLTALSDVDDRVDGLMAGGDDYLVKPFHLSELLARITVL 115 Query: 116 YRRLKVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR K S +++ R + QG L +E +L+ M N G+ ++T Sbjct: 116 GRRPKQSTQEPTELVVHDLKLNLLTRQAQRQGRNIDLLGKEFSLLQLFMENPGRIFSRTL 175 Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I I+ FD VVE+H+SKLR+K+ + + R +GY+I Sbjct: 176 ILEKIWDFNFDPGT--TVVETHVSKLRQKVDKPFDVALIHTVRNMGYTI 222 >gi|257429162|ref|ZP_05605549.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257279643|gb|EEV10230.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] Length = 219 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 87/167 (52%), Gaps = 6/167 (3%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L R D++ ++ + G +L ++ +P+I ++ +L F SG DD Sbjct: 49 LLEKQRVDIAVVDIMM--DGMDGFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDD 106 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRI 156 V KP +E++ R+ A+ RR +++N T G + + + +V + LP +E ++ Sbjct: 107 YVTKPFEVKELIFRIRAVLRRYNINSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQL 166 Query: 157 LEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 L +++A R K++ + QI I+G +D +E V+ HI +LR++L+ Sbjct: 167 L-FMLAARPKQIFTREQIIEKIWG-YDYEGDERTVDVHIKRLRQRLK 211 >gi|163813849|ref|ZP_02205243.1| hypothetical protein COPEUT_00002 [Coprococcus eutactus ATCC 27759] gi|158450719|gb|EDP27714.1| hypothetical protein COPEUT_00002 [Coprococcus eutactus ATCC 27759] Length = 223 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L + IR P++ ++ + F +G DD + KP E+ ARVAA RR + Sbjct: 60 LTLCQKIRELITCPILFLTARVESADKIIGFQAGADDYIIKPFDLDELGARVAAHLRREQ 119 Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N+A G + + R V GE L +RE I+E L N G+ + +I+ + Sbjct: 120 RHRNKATIRFFGELTIDYSARTVTVAGEPVALSKREFDIVELLSLNAGQVFDRERIYETV 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +GL E + V+E HI K+R KL +D+ GY WN Sbjct: 180 WGLDGEGNSDTVME-HIRKIRAKLAACTLHSYIDTVWGCGYR--WN 222 >gi|91783748|ref|YP_558954.1| two component transcriptional regulator QseB [Burkholderia xenovorans LB400] gi|91687702|gb|ABE30902.1| Putative QseB, two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 223 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 83/160 (51%), Gaps = 6/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L R+ + VP++ ++ ++ + ++G DD + KP E++AR A+ RR + Sbjct: 67 LKRVRDSGKDVPVLVLTARGTVADRVGGLEAGADDYLGKPFDLTELIARCRALLRRAQGR 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + + V + +V PL RE IL L+ N+G +++++ ++YG + Sbjct: 127 SVEQIRYLDLTVNPAAQTVDVGTRRVPLTSREWAILLQLLTNQGIPQSRSRLEESLYG-W 185 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E +E N +E H+S LRKKL KL + + R +GY ++ Sbjct: 186 QEEIESNAIEVHVSNLRKKLGAKL----IKTVRNIGYVVE 221 >gi|332974487|gb|EGK11409.1| response regulator [Desmospora sp. 8437] Length = 237 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 10/166 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E R IR VP++ +S + + G DD + KP RE+LARV A +RR++ Sbjct: 73 METCRRIRQQHTVPILLLSARDRELDKVIGLEIGADDYLTKPFSPRELLARVKAHFRRVE 132 Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +GP+ + + + GE L +E +IL +L + + +++ Q++ Sbjct: 133 RMKREMGPYTRSGPLSINEQTYEVFMDGEKVDLSAKEFQILSFLAKHPNQVLSREQLYQK 192 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 I+G E + N V HI K +R KLG D + + +GY W Sbjct: 193 IWG--QEFGDLNTVTVHI----KNIRKKLGRDCIKTIWGVGYKFAW 232 >gi|297537645|ref|YP_003673414.1| winged helix family two component transcriptional regulator [Methylotenera sp. 301] gi|297256992|gb|ADI28837.1| two component transcriptional regulator, winged helix family [Methylotenera sp. 301] Length = 227 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 2/133 (1%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAET 128 ++ +P++ ++ ++ + F G DD + KP +E++AR+ AI RR +N Sbjct: 70 NNSLPVLMLTARDTIDDRVYGFQLGADDYLVKPFALKELVARIQAITRRFHTRQHNEIIF 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G +R+ + + + L RE +L Y++ N GK V+K QI AI +DEA N Sbjct: 130 GILRIDLTAKRAYLSDKSLELLPREWAVLVYILNNLGKVVSKEQILEAISD-WDEAPSSN 188 Query: 189 VVESHISKLRKKL 201 +E +IS+LR KL Sbjct: 189 AIEVYISRLRTKL 201 >gi|296120277|ref|YP_003628055.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296012617|gb|ADG65856.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 235 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 21/168 (12%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 +L + +R P++ ++ + + D G DD + KP E+LAR+ A+ RR Sbjct: 61 DLLKQLRTKKSTPVLMLTARDGVADRVQGLDQGADDYLVKPFDRGELLARLRALIRRAAG 120 Query: 121 VSNNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S + E G +VF D D E+ L RE I EYL +RG+ V +T Sbjct: 121 ESESLLELGQGVTINLIHRKVFRD--DVEI-----VLTAREYSIFEYLALHRGRVVPRTD 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ I+ DE++ N+++ HIS LR+ KLG D ++++R LGY I Sbjct: 174 LYDHIFDENDESL-SNLLDVHISNLRR----KLGRDVIETRRGLGYII 216 >gi|222871904|gb|EEF09035.1| predicted protein [Populus trichocarpa] Length = 284 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 112/225 (49%), Gaps = 9/225 (4%) Query: 1 MFVLI-DDRALVKDGYI-ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 M +LI +D ++ DG + +L G V N E + L +S+ D+ ++ L Sbjct: 61 MRILIAEDDQVLADGLLRSLRGSGAVVSHVANGSEADTALMTSSEFDLLILDLGL--PKM 118 Query: 59 KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ + +R +P++ ++ S++ + D G DD + KP E+ ARV A+ R Sbjct: 119 HGLEVLKKLRGRGDALPVLILTAADSVEERVQGLDYGADDYMAKPFALSELEARVRALTR 178 Query: 118 R-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + +++ + GP+ GR + G++ L RE +LE L+ G+ V+K Q+ Sbjct: 179 RGMGGASSTIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVER 238 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + DE V N +E +I +LRKK+ G + + R LGY ++ Sbjct: 239 LCEWGDE-VSNNAIEVYIHRLRKKIER--GPIRIATVRGLGYCLE 280 >gi|213417018|ref|ZP_03350162.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213580461|ref|ZP_03362287.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213612642|ref|ZP_03370468.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648225|ref|ZP_03378278.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213864844|ref|ZP_03386963.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289828350|ref|ZP_06546263.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 223 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 5/218 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ ++ + D++ ++ L E L Sbjct: 4 LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R+ +P++ ++ Q ++ SG DD V KP H E++AR+ A+ RR Sbjct: 62 LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ V EV L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVINISPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E E + ++ + +LRKK++ + D + + R GY Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGY 218 >gi|167755239|ref|ZP_02427366.1| hypothetical protein CLORAM_00744 [Clostridium ramosum DSM 1402] gi|167705289|gb|EDS19868.1| hypothetical protein CLORAM_00744 [Clostridium ramosum DSM 1402] Length = 228 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 81/159 (50%), Gaps = 1/159 (0%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + +R S +P+I ++ S + G DD + KP + +L + A+++RL Sbjct: 70 QLLKKLREKSTIPVIMVTSKDSEIDEILALSYGADDYITKPYNPTILLLHIEAVFKRLHK 129 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + IRV E + L + E I YL+ N+GK V + I + ++G Sbjct: 130 AEPKLTYQNIRVNLMKSTLEKDDQELLLSKNEMGIFYYLLMNQGKIVTRDDIMNYLWG-T 188 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D+ +++N + ++++LRK+L FD ++++R GY + Sbjct: 189 DKFIDDNTLTVNMTRLRKRLEKIGLFDVIETRRDQGYML 227 >gi|154482504|ref|ZP_02024952.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC 27560] gi|149736634|gb|EDM52520.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC 27560] Length = 231 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 13/150 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R IR S+VP+I ++ L F+ GVD+ ++KP R ++ARV AI RR Sbjct: 71 EACREIRKISKVPIIMLTAKSEESDELLGFELGVDEYISKPFSPRILVARVDAILRR--- 127 Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +NN + G I + V+GE L +E +L Y + N+G +++ I + Sbjct: 128 TNNIGQDQIEQAGDIEINKAAHIVTVKGEPIELSFKEFELLSYFIQNKGIALSRENILNN 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG 206 ++ +D + +++H+ KKLRNKLG Sbjct: 188 VWN-YDYFGDARTIDTHV----KKLRNKLG 212 >gi|116252033|ref|YP_767871.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256681|emb|CAK07769.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 219 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 6/131 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPL 149 ++G DD + KP E+ AR+ ++ RR + N T GP+ + R + G+ L Sbjct: 91 LNAGADDYMVKPFDLAELSARIGSVARRYAGNPNPNITLGPLAIDLAARSITLNGKAIVL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 RE + E + G+ ++K Q+ +Y FD ++ N +E H+S+LRK KLG Sbjct: 151 TAREWVLFEAFLQRPGQLLSKAQLEERLYS-FDREIDSNAIEVHVSRLRK----KLGTHV 205 Query: 210 VDSKRFLGYSI 220 ++++R LGY + Sbjct: 206 IETERGLGYRL 216 >gi|315641787|ref|ZP_07896791.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] gi|315482462|gb|EFU73001.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] Length = 234 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 7/167 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R + + Q P + ++ +L+ + F+ G DD + KP + E+ RV ++ Sbjct: 65 GYEVLAQAR--KQNIQTPNLILTAKDALEDKITGFEKGADDYLTKPFYREELPMRVKSLL 122 Query: 117 RRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +R N + + ++ GEV P+ +E +L Y + N+ + K QIF Sbjct: 123 KRSLGLFDENSLVYRDLTCSLNTKEVTYNGEVLPIQGKEFELLVYFIQNQRVILTKEQIF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 I+G FD A VVE ++S LRK LR G D + + R +GY + Sbjct: 183 DRIWG-FDSATTLTVVEVYMSNLRKHLRTT-GIDKDLQTLRNVGYML 227 >gi|227534396|ref|ZP_03964445.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188013|gb|EEI68080.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 231 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 3/133 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ +L L F+ G DD + KP H E++ R+ A+ +R+ ++ G Sbjct: 75 KTPVLILTAKDALTDKLHGFELGGDDYLTKPFHREELIMRLKALLKRIGHFFDDDGLTAG 134 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P V + + + L +E +L YL+ N+ + K QIF ++G FD +V Sbjct: 135 PFVVHVTSHEVLINDQPVALNGKEFDLLVYLLQNQKTIITKDQIFDRLWG-FDSETAVSV 193 Query: 190 VESHISKLRKKLR 202 VE ++S LRKKL+ Sbjct: 194 VEVYMSNLRKKLK 206 >gi|126737572|ref|ZP_01753302.1| two-component response regulator [Roseobacter sp. SK209-2-6] gi|126720965|gb|EBA17669.1| two-component response regulator [Roseobacter sp. SK209-2-6] Length = 225 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 13/158 (8%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A P + ++ ++ ++ ++G DD ++KP E+LAR+ A+ RR A T Sbjct: 69 AKVMTPALLLTAMGEVEDRVEGLEAGADDYLSKPFAMTELLARITALSRR---RQGEATT 125 Query: 129 GPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 ++ G + ++ +GE+ PL +E ++LE LM ++G+ + + ++ + Sbjct: 126 TLTKLEHKGLELDILAQKCSYKGEIIPLNPKEFKLLEVLMRSKGRVQTRAMLLERVWDIN 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD A +VVE+H+S+LR K+ + + R GY Sbjct: 186 FDPAT--SVVETHMSRLRNKVEKPFDLKLITTVRGAGY 221 >gi|119776138|ref|YP_928878.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119768638|gb|ABM01209.1| two component transcriptional regulator, winged helix family [Shewanella amazonensis SB2B] Length = 224 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 15/170 (8%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G +LE R H+ P+I ++ ++ F++G DD + KP H +E+LAR+ A Sbjct: 57 GNGLTLLEKWRTEGIHT--PVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIHA 114 Query: 115 IYRRLKVSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + R A G +S + +V +V L E R+L+ + + K + Sbjct: 115 LINR--AHGRPASPGKQLSYSGVVLDESQQTVQVGEQVHELTAMEFRLLKIFLLSPKKLL 172 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +K Q+ +Y FD+ E NVVE +++ LRK KLG ++++R GY Sbjct: 173 SKAQLTDKLYQ-FDDEKESNVVEVYVTHLRK----KLGKTAIETRRGQGY 217 >gi|157372224|ref|YP_001480213.1| two component transcriptional regulator [Serratia proteamaculans 568] gi|157323988|gb|ABV43085.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] Length = 220 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 15/224 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D L+ DG A G++ GFN F + L + + +A ++ L Sbjct: 3 ILLIEDDKLIGDGIKA-----GLTRLGFNLDWFTDGLVGKNALESAPYDAVILDLSLPGL 57 Query: 62 ELPRIIRAHSQ----VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 + ++R Q VP++ ++ +L+ + SG DD + KP E+ AR+ A+ R Sbjct: 58 DGLDLLRQWRQAGHDVPVLILTARDALEQRVSGLQSGADDYLCKPFALTEVAARLQALIR 117 Query: 118 RLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + G + + R GE L RE +LE + N+G+ +A+ I Sbjct: 118 RRHGQLMPQLVHGNVVFDTATRSVSCNGEPVTLTPRELAVLELFLHNKGRVLARPLIQEK 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y +D+ V N VE HI LR+KL N GF + + +GY++ Sbjct: 178 LYN-WDDEVSSNAVEVHIHHLRRKLGN--GF--IRTIHGVGYTL 216 >gi|91978702|ref|YP_571361.1| response regulator receiver [Rhodopseudomonas palustris BisB5] gi|91685158|gb|ABE41460.1| response regulator receiver [Rhodopseudomonas palustris BisB5] Length = 219 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 107/224 (47%), Gaps = 15/224 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A++ DG A G S++ + E + + + + SA+ ++ + Sbjct: 3 ILVVEDDAMIADGIRAGLALAGASIDCVANCE--DAVTALSANSFSAVVLDIMLPDGSGI 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +RA P++ ++ + + DSG DD + KP E+ A + ++ Sbjct: 61 DLLRKLRAGGDTTPVLLLTALDEVGDRIAGLDSGADDYLGKPFDLDEL---GARLRAIIR 117 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + RA T G IR+F R+ ++G PL RRE +L LM G ++ ++ Sbjct: 118 RRDGRAATCLEHGAIRLFPADRNATLEGAPVPLSRREFAVLHALMERPGVVRSRGELEER 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG DE +E N VE HI LR KLG +++ R +GY + Sbjct: 178 LYGWGDE-IESNAVEVHIHNLRA----KLGRAAIETIRGIGYRM 216 >gi|88607685|ref|YP_505647.1| DNA-binding response regulator [Anaplasma phagocytophilum HZ] gi|88598748|gb|ABD44218.1| DNA-binding response regulator CtrA [Anaplasma phagocytophilum HZ] Length = 276 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 1/132 (0%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130 +VP++ +S S+ + G DD + KP H E+LAR+ A+ RR + + G Sbjct: 75 RVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAVVRRTRGHPESIVRVGN 134 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I + D + G + L ++E ++E L + G + K S +Y DE ++ ++ Sbjct: 135 ISINLDHKCVSCNGNIIHLTKKEYGMIELLSSRLGTVLTKEMFLSHLYRELDEPSDDKII 194 Query: 191 ESHISKLRKKLR 202 + + KLRKKL+ Sbjct: 195 DVFMCKLRKKLK 206 >gi|117925190|ref|YP_865807.1| two component transcriptional regulator [Magnetococcus sp. MC-1] gi|117608946|gb|ABK44401.1| two component transcriptional regulator, winged helix family [Magnetococcus sp. MC-1] Length = 235 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 9/134 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET------GPIRVFSDGRDPEVQG 144 FD+G DD V KP RE+L RV A+ RR +V + + GP+ V V G Sbjct: 96 FDAGADDYVTKPFSMRELLLRVKALMRRAQVVSLPSAAVEDLCFGPLTVDQTAHQVWVNG 155 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 + L E ++L + NRG+ + + + ++GL AV+ +++H+ +LR+KL + Sbjct: 156 QEVQLTYMEFKLLVAFLENRGRLLTRDFLLDEVWGL-SAAVQTRTIDTHVKRLRQKLSDA 214 Query: 205 LGFDPVDSKRFLGY 218 + +++ R GY Sbjct: 215 GQY--IETLRGAGY 226 >gi|297624706|ref|YP_003706140.1| winged helix family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165886|gb|ADI15597.1| two component transcriptional regulator, winged helix family [Truepera radiovictrix DSM 17093] Length = 223 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 2/159 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S P+I ++ + T ++ ++G DD + KP H E+LAR+ R Sbjct: 65 EIARRVRKTSSTPIIILTAADDVATKVEMLNAGADDYLAKPFHTEELLARIRVQLRHQNA 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + + + R + L RE +L YL + G+ + +I ++G Sbjct: 125 GSAQT-VGDMVIDINRRQLYWDKQEIRLSPREFDLLVYLCGSPGRVYTRQEIEQNVWG-E 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NVV+ HI+ +R KLR+ G+ + + R +GY+I Sbjct: 183 ELPPSSNVVDVHIANIRAKLRDAGGYGLIRTVRGIGYAI 221 >gi|293394527|ref|ZP_06638823.1| two component response regulator [Serratia odorifera DSM 4582] gi|291422992|gb|EFE96225.1| two component response regulator [Serratia odorifera DSM 4582] Length = 220 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 103/221 (46%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ DG G +L+ F +SA D ++ L G L Sbjct: 3 ILLIEDDKIIGDGINVGLTKLGFNLDWFTDGVIGRQALTSAPYDAVILDLSL--PGIDGL 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R R A VP++ ++ +L+ + +G DD + KP E+ AR+ A+ RR Sbjct: 61 DLLREWREAGHDVPVLILTARDALEQRVSGLQNGADDYLCKPFALAEVAARLQALIRRRH 120 Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + + R + GE L RE +LE L+ N+G+ +A+ I +Y Sbjct: 121 GQLTPQLVHGKLVFDTAARSVCLNGEPVILTPRELAVLELLLNNKGRVLARPLIQEKLYN 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D+ V N VE HI LR+KL N + + + +GY++ Sbjct: 181 -WDDEVSSNAVEVHIHHLRRKLGNGV----IRTVHGVGYTL 216 >gi|260891405|ref|ZP_05902668.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254] gi|260858788|gb|EEX73288.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254] Length = 229 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 17/153 (11%) Query: 61 LELPRIIRAHSQVPLIGIS----DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 ++ R +R S VP+I I+ DY + + G DD + KP EI+AR+ AI Sbjct: 61 FDVCRQVRTFSNVPIIMITARGEDYEKIMG----LEIGADDYIVKPFSPGEIIARINAIL 116 Query: 117 RRLKVSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR+ N+ E+ I ++ + ++ E+ L ++E IL L N+ K + Sbjct: 117 RRITPKND--ESAKIFIYDNLEIDLNNFTVKINDEIISLTKKEIEILWTLATNQNKVFTR 174 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + I+G FD E V++HI +LR KL N Sbjct: 175 ENLLDLIWG-FDYFGESRTVDTHIKRLRAKLDN 206 >gi|256377936|ref|YP_003101596.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255922239|gb|ACU37750.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 227 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 6/180 (3%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF E Q+ A D A + L+ G L + R++R+ +P+I ++ Sbjct: 25 EGFAVSEAVSGEQALALLDRRAFDVVLLDLMLPGVDGLHVCRVLRSRGDLPVIVVTARAD 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGPIRVFSDGRDPE 141 + + ++G DD V KP+ + AR+ A+ RR + E G + V D R Sbjct: 85 AEDVIAGLEAGADDYVTKPLVAAVLAARIRALLRRSGGAAQADELRAGDLVVRQDNRTAH 144 Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 GE L R E R+L L+A G+ V + Q+ + ++G +D + +++ HI +LR+K+ Sbjct: 145 RAGEQVHLTRTEFRLLVELLAAEGRVVTREQLLNRVWG-YDYFGDTRLLDVHIRRLRRKV 203 >gi|213965034|ref|ZP_03393233.1| transcriptional regulatory protein [Corynebacterium amycolatum SK46] gi|213952570|gb|EEB63953.1| transcriptional regulatory protein [Corynebacterium amycolatum SK46] Length = 231 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 13/189 (6%) Query: 40 SSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 S A D+ ++ L G E+ + IR S VP+I ++ + + + G DD V Sbjct: 42 SKAEPDIVLLDLMLPGMSGT--EVCKNIRLKSSVPVIMVTARDTEIDKVVGLEIGADDYV 99 Query: 100 NKPIHHREILARVAAIYRRLKVSNNR---------AETGPIRVFSDGRDPEVQGEVFPLP 150 KP RE++AR+ A+ RR + ++ GP+ + + V G+ +P Sbjct: 100 TKPYSSRELIARIRAVLRRGRHDDSDDVEDLYEEVLRGGPVVLDVERHVVTVDGDDVAMP 159 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDP 209 +E +LEYL+ NRG+ + + Q+ ++G D + ++ HI +LR K+ RN + Sbjct: 160 LKEFDLLEYLLRNRGRVLTRGQLIDRVWG-SDYVGDTKTLDVHIKRLRSKIERNPSSPEF 218 Query: 210 VDSKRFLGY 218 + + R LGY Sbjct: 219 LVTVRGLGY 227 >gi|261408536|ref|YP_003244777.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284999|gb|ACX66970.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 231 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 15/208 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGE 58 +L+DD + I F D + LEG++ L +E L S R+ I ++ + + Sbjct: 8 ILLVDD-----EEEIISFIQDSLELEGYHVLTAGSGQEALIQSKRQPSLIILDVMMPEMD 62 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + E+ + +R +Q P++ +S S + +G DD + KP E+ AR+ A RR Sbjct: 63 GI-EVCKQLRETTQCPIVFLSARQSEVDRIKGLAAGGDDYLLKPFSLAELKARIHAHLRR 121 Query: 119 LKVSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + E G +R + G G PL +E +I+E L ++G+ ++ QI Sbjct: 122 EQRIHTQKEQGILRFQALTIDCKGHAVSCNGHDLPLTNKEFQIVELLAMHQGQVFSREQI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 + ++GL D +++ + HI K+R KL Sbjct: 182 YEKLWGL-DADGDDSTITEHIKKIRAKL 208 >gi|160893495|ref|ZP_02074280.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50] gi|156864890|gb|EDO58321.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50] Length = 227 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 82/163 (50%), Gaps = 8/163 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L RI + + VP++ ++ ++ + D+G DD + KP E+LAR+ +R S Sbjct: 65 LRRIRKEGNNVPILLLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRVALKR--KS 122 Query: 123 NNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +R ET + + +D + V GE L RE +L LM N+ + + ++ + + Sbjct: 123 TDRQETHKLEIHGVSLDTDRHEVMVAGEPVELTNREFELLHTLMENKNIVMDREKLMNIV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G ++ E N+++ +I LR K+ ++ G + + R +GY I Sbjct: 183 CG-YEYVGETNIIDVYIRYLRTKIDDRFGIKLITTVRGVGYVI 224 >gi|146310223|ref|YP_001175297.1| DNA-binding response regulator CreB [Enterobacter sp. 638] gi|145317099|gb|ABP59246.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 229 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 95/207 (45%), Gaps = 13/207 (6%) Query: 24 VSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGE-KVLELPR-IIRAHSQVPLIGIS 79 +S EGF FE L + A A+ +G + EL R ++ H +P++ ++ Sbjct: 23 LSQEGFAVKAFERGLPALDEAHRQAPALAILDVGLPDISGFELCRQLLAQHPSLPVLFLT 82 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRD 139 L + G DD V KP RE+ ARV I RR++ S ++ I F + + Sbjct: 83 ARSDEVDKLLGLEMGADDYVAKPFSPREVCARVRTILRRMQKSAAPSDIVRIGQF-ELNE 141 Query: 140 PEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHI 194 P G PL R E +L+ L+ G+ ++ Q+ ++G DE + V++HI Sbjct: 142 PAAHISWCGHALPLTRYEFLLLKTLLNAPGRVFSRQQLMDKVWG--DEGDSFDRTVDTHI 199 Query: 195 SKLRKKLRN-KLGFDPVDSKRFLGYSI 220 LR KLR P+ + R +GYS+ Sbjct: 200 KTLRAKLRAINADLSPISTHRGMGYSL 226 >gi|322385478|ref|ZP_08059122.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] gi|321270216|gb|EFX53132.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] Length = 224 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K + N G + V V G L Sbjct: 91 FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLSYGDVTVNLSTNSTLVDGREVEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + KTQIF ++G FD +VVE ++SK+RKKL+ + Sbjct: 151 LGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKIRKKLKGTAFANN 209 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 210 LQTLRSVGY 218 >gi|325680782|ref|ZP_08160320.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8] gi|324107562|gb|EGC01840.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8] Length = 220 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 6/150 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R ++ P++ +S + L+ D G DD + KP +LA++ I++R + + Sbjct: 67 LRENADTPILIVSARTDKEDKLNGLDLGADDYIEKPYDIDILLAKIKGIFKRRYQRSMLS 126 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 +G ++ + E+ G L +E +L L+ N+GK + K +FS ++G D E Sbjct: 127 ASGVTLNLAN-KTAEIDGNPVQLSAKEFDLLALLIENQGKALKKEYLFSTVWG-SDSDSE 184 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + HI++LR+ KLG DP ++KR L Sbjct: 185 LQTLHVHINRLRQ----KLGDDPKNAKRLL 210 >gi|288554581|ref|YP_003426516.1| two-component response regulator yycF [Bacillus pseudofirmus OF4] gi|288545741|gb|ADC49624.1| two-component response regulator yycF [Bacillus pseudofirmus OF4] Length = 236 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 109/226 (48%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D I F + E F + + E ++ +E+ I ++ + + Sbjct: 5 ILVVDDEKPIAD--ILKFNLEKEGFEVFCAYDGNEAVEQVKKEEPDLILLDIMLPHKDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R +R +P+I ++ S + + G DD V KP RE+LARV A RR K Sbjct: 63 EVCREVRKSYDIPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRRKS 122 Query: 121 ----VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS + T G + ++ D + +GE L RE ++ YL + G+ + + + Sbjct: 123 GAEEVSTQKELTVGDLTIYPDAYQVKRRGETIELTHREFELIHYLAKHLGQVMTREHLLQ 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 A++G +D + V+ + +LR+K+ + + + + ++R +GY + Sbjct: 183 AVWG-YDYFGDVRTVDVTVRRLREKVEDNPSYPNWIITRRGVGYYL 227 >gi|257124968|ref|YP_003163082.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257048907|gb|ACV38091.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 229 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 21/155 (13%) Query: 61 LELPRIIRAHSQVPLIGIS----DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 ++ R +R S VP+I I+ DY + + G DD + KP EI+AR+ AI Sbjct: 61 FDVCREVRKFSNVPIIMITARGEDYEKIMG----LEIGADDYIVKPFSPGEIIARINAIL 116 Query: 117 RRLKVSNNRAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 RR+ N+ +E ++FS + ++ E+ L ++E IL L N+ K Sbjct: 117 RRITPKNDDSE----KIFSFDNLEIDLNNFTVKINNEIISLTKKEIEILWTLATNQNKVF 172 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + I+G FD E V++HI +LR K+ N Sbjct: 173 TRENLLDLIWG-FDYFGESRTVDTHIKRLRAKMDN 206 >gi|288960040|ref|YP_003450380.1| DNA-binding two-component response regulator [Azospirillum sp. B510] gi|288912348|dbj|BAI73836.1| DNA-binding two-component response regulator [Azospirillum sp. B510] Length = 221 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 75/146 (51%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL L R R S VP++ ++ ++ + D G DD + KP E ARV A+ Sbjct: 59 GFEVLTLIR--RRGSTVPVMILTAREAVADRVKGLDLGADDYLLKPFDPAEFEARVRALM 116 Query: 117 RRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + + GP+R + G V L +RE +LE L+ GK V K ++ Sbjct: 117 RRGQGTPIPELACGPLRYDRSTATVTLNGRVLDLRKRELAVLEGLITRAGKVVPKDRLAG 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 ++G FDE V N +E ++++LRKKL Sbjct: 177 EVFG-FDEPVAPNAIELYVARLRKKL 201 >gi|325261598|ref|ZP_08128336.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5] gi|324033052|gb|EGB94329.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5] Length = 219 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 15/211 (7%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL KDG++ DG +L+ +++ L ++ GE + IR Sbjct: 15 ALEKDGHLVDTETDGTALQPSRCQQYDLLLLD------------VMMPGEDGFSVCGRIR 62 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127 A P++ ++ + F G DD + KP E+ ARV A RR ++ + Sbjct: 63 AEVDCPILFLTARAEDAALVQGFGLGADDYIKKPFSIAELRARVNAHLRREVRQPAHTLN 122 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G +R + G P + E I EYL + G+ K Q++ A++G FD + Sbjct: 123 RGGVRFDMQAKMAAAGGNPLPFTKGEYAICEYLALHAGQVFTKEQLYEAVFG-FDAEGDP 181 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + HI +R KL+ + G + +++ +GY Sbjct: 182 SSIAEHIKNIRAKLKTE-GINSIETVWGVGY 211 >gi|317491839|ref|ZP_07950274.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920273|gb|EFV41597.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 223 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 105/224 (46%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L++ D G ++ + ++ D++ ++ L GE L Sbjct: 3 ILVVEDNGLLRHHLSVQMRDMGHQVDAAEDAKEADFFVKEQTPDIAIVDLGL--PGEDGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R RA ++P++ ++ S Q + ++G DD V KP H E++AR+ A+ RR Sbjct: 61 SLIRRWRAEQIKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ P ++ R+ V + L E I+E L+ N K V+K + +Y Sbjct: 121 GLASQVITLPPFQIDLSRRELTVNENLIKLTAFEYTIIETLIRNHAKVVSKDALMLQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E E + ++ + +LRKKL+N+ + + + R GY D N Sbjct: 181 -DAELRESHTIDVLMGRLRKKLQNEYPQEVITTVRGQGYRFDIN 223 >gi|197302707|ref|ZP_03167761.1| hypothetical protein RUMLAC_01437 [Ruminococcus lactaris ATCC 29176] gi|197298289|gb|EDY32835.1| hypothetical protein RUMLAC_01437 [Ruminococcus lactaris ATCC 29176] Length = 228 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 4/139 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R +P+I IS + Q +D G DD + KP E+LAR+ + RR++ N++ Sbjct: 67 VRKKFTIPVIIISAKETTQNKIDLLRLGADDYITKPFDMEEVLARIESNLRRVQFQNSQT 126 Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E + + + + G L +E ILE LM K +K+ +F +++ + Sbjct: 127 ECLQYNNLTLDLEKNTAFLNGIELSLTAKEFGILELLMKYPDKVFSKSNLFQSVWDT-EY 185 Query: 184 AVEENVVESHISKLRKKLR 202 E+N + HIS LR KL+ Sbjct: 186 IAEDNTLNVHISNLRNKLK 204 >gi|166033276|ref|ZP_02236105.1| hypothetical protein DORFOR_03002 [Dorea formicigenerans ATCC 27755] gi|226324215|ref|ZP_03799733.1| hypothetical protein COPCOM_01994 [Coprococcus comes ATCC 27758] gi|238925827|ref|YP_002939345.1| hypothetical protein EUBREC_3485 [Eubacterium rectale ATCC 33656] gi|257414028|ref|ZP_04745025.2| DNA-binding response regulator VicR [Roseburia intestinalis L1-82] gi|323341562|ref|ZP_08081799.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] gi|166027633|gb|EDR46390.1| hypothetical protein DORFOR_03002 [Dorea formicigenerans ATCC 27755] gi|225207764|gb|EEG90118.1| hypothetical protein COPCOM_01994 [Coprococcus comes ATCC 27758] gi|238877504|gb|ACR77211.1| hypothetical protein EUBREC_3485 [Eubacterium rectale ATCC 33656] gi|257201430|gb|EEU99714.1| DNA-binding response regulator VicR [Roseburia intestinalis L1-82] gi|291540566|emb|CBL13677.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] gi|323091013|gb|EFZ33648.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] Length = 236 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127 A Q+P++ I+ S F SG DD + KP++ E++ RV A+ RR ++ N ++ Sbjct: 83 AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G D E LP++E +L L A+ G+ K Q+ ++G EA + Sbjct: 143 IGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYETEA-DP 201 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +E HI ++R++ ++ F+ V + R +GY + Sbjct: 202 HTIEVHIGRIRERFKDNPDFEIV-TMRGIGYKV 233 >gi|15805769|ref|NP_294466.1| response regulator [Deinococcus radiodurans R1] gi|94986415|ref|YP_605779.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|6458452|gb|AAF10321.1|AE001930_2 response regulator [Deinococcus radiodurans R1] gi|94556696|gb|ABF46610.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 225 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 11/165 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S P+I ++ +Q ++ DSG DD + KP E+LARV A RR+ Sbjct: 64 LEVARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRV- 122 Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N A TG +RV DGR+ G L +E +LE L N GK ++ +I Sbjct: 123 ---NPAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + NVV+ +I LR+KL + + R +GY + Sbjct: 180 KVWPEYTGG--SNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 222 >gi|328544892|ref|YP_004305001.1| phosphate regulon transcriptional regulatory protein [polymorphum gilvum SL003B-26A1] gi|326414634|gb|ADZ71697.1| Phosphate regulon transcriptional regulatory protein [Polymorphum gilvum SL003B-26A1] Length = 231 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +RA ++ +P+I ++ + +G DD V KP E++ARV AI R Sbjct: 61 IELCRRLRARAETERLPVIMLTARGEEAERIRGLATGADDYVVKPFSVPELMARVRAILR 120 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + V + +G I + + G+ L E R+LE+LM + G+ ++ Q+ Sbjct: 121 RARPEVVSTMLRSGDIELDRETHRVRRGGKEIHLGPTEFRLLEFLMTSPGRVFSREQLLD 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK + DP+ + R GY+ + Sbjct: 181 GVWG-HDVYVDERTVDVHVGRLRKAINRGKVKDPIRTVRGAGYAFN 225 >gi|325283717|ref|YP_004256258.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324315526|gb|ADY26641.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 225 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 11/165 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S P+I ++ +Q ++ DSG DD + KP E+LARV A RR+ Sbjct: 64 LEVARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRV- 122 Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N A TG +RV DGR+ G L +E +LE L N GK ++ +I Sbjct: 123 ---NPAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + NVV+ +I LR+KL + + R +GY + Sbjct: 180 KVWPEYTGG--SNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 222 >gi|322373046|ref|ZP_08047582.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus sp. C150] gi|321278088|gb|EFX55157.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus sp. C150] Length = 219 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 5/164 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L+ IR P++ I+ + G DD + KP +E+ ARVAA RR Sbjct: 60 LQFCHEIRDQVDCPILFITARTQEGDIVQGLSYGADDYICKPFGVKELQARVAAHLRRES 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +++ G + ++ V+ ++ L + E I ++L N+G+ +K QI++ +YG Sbjct: 120 RERHHKLSLGDFQFDLSAQELYVENQLLDLTKSEYGICQFLAENKGQVFSKEQIYTHLYG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D+ V E HI +R KL++ +G +P+++ +GY W+ Sbjct: 180 YEDKGSPTAVAE-HIKNIRAKLKD-VGQNPIETVWGIGYK--WH 219 >gi|307294613|ref|ZP_07574455.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] gi|306879087|gb|EFN10305.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] Length = 233 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +V R + + VP+I ++ + + ++G DD V KP RE++ARV A+ Sbjct: 62 GIEVCRRLRRLNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVL 121 Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR++ A G FSD G G+V PL E R+L++ + + G ++ Sbjct: 122 RRVRP----ALAGETLTFSDVEMDTVGHKVRRGGQVIPLGPTEFRLLKHFLEHPGWVFSR 177 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 ++ +++G D +E V+ HI +LRK + + D + + R GY++D Sbjct: 178 ERLLDSVWGQ-DSDIELRTVDVHIRRLRKAINGDGRYQDIIRTVRSAGYALD 228 >gi|311741763|ref|ZP_07715574.1| response regulator [Aeromicrobium marinum DSM 15272] gi|311314769|gb|EFQ84675.1| response regulator [Aeromicrobium marinum DSM 15272] Length = 226 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 14/169 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I +S + + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQLRQTSSVPIIMVSAKDTEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGVA 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V E G +R+ D V G LP +E +LE+ + N G+ + + Q+ + Sbjct: 122 EDDVEGASLEAGRVRMDVDRHLVTVDGTETRLPLKEFELLEFFLRNPGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221 +G D + ++ H+ K+LR K+ DP + + R LGY D Sbjct: 182 WG-ADYVGDTKTLDVHV----KRLRAKIEVDPANPVTLTTVRGLGYKFD 225 >gi|237793594|ref|YP_002861146.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|229263769|gb|ACQ54802.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 235 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 84/159 (52%), Gaps = 6/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR HS+VP+I IS S + ++G DD + KP + +LA++ + RR+ S + Sbjct: 70 IRNHSKVPIIFISARDSDMDQVMAIENGGDDFITKPFSYYVLLAKIKGVLRRVYGSYAKN 129 Query: 127 ET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +T G + ++++ E +G L + E +L YL+ N K V++ + ++ Sbjct: 130 DTDFLKIGDLILYTNKSILEFKGRKTELSKNEFSLLLYLLKNINKIVSRDTLLEILWSDT 189 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +++N + ++++LRK+L + +++KR GY + Sbjct: 190 D-FIDDNTLSVNVTRLRKRLEEVGITNAIETKRGQGYML 227 >gi|210612997|ref|ZP_03289562.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787] gi|210151360|gb|EEA82368.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787] Length = 223 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 13/187 (6%) Query: 40 SSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98 SSA D+ ++ L G V EL IR SQVP+I ++ + + D VDD Sbjct: 42 SSAHFDLILLDIMLPKIDGFTVCEL---IRKQSQVPIIMLTALNGEEEQIRGLDLQVDDY 98 Query: 99 VNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154 + KP ++ ++ A+ RR + + + + D V G F L +RE Sbjct: 99 ITKPFSMPILVRKIGAVLRRSSMIPEQEHQTITYKNLVLDMDSYTAVVDGVSFDLTQREF 158 Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214 +L L+ N+G+ + + + ++ +D +E VV++HI LRK KLG D + + R Sbjct: 159 EVLRELLLNQGRVLTRQNLLDKLWK-YDFYGDERVVDTHIKNLRK----KLGIDFIQTIR 213 Query: 215 FLGYSID 221 +GY ID Sbjct: 214 GVGYKID 220 >gi|77406279|ref|ZP_00783346.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77175132|gb|EAO77934.1| DNA-binding response regulator [Streptococcus agalactiae H36B] Length = 205 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 4/161 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L R+ A + P+I ++ ++ D G DD + KP E+LAR+ R+ + Sbjct: 44 LKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSSLI 103 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ G IR+ +D + E + L +E ++E M N + + K Q+ S ++G Sbjct: 104 RANQLRLGNIRLNTDSHELESKESSVKLSNKEFLLMEVFMRNAKQIIPKNQLISKVWGPS 163 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + E N +E IS LRKKLR K + + +K F GYS++ Sbjct: 164 DNS-EYNQLEVFISFLRKKLRFLKADIEIITTKGF-GYSLE 202 >gi|329890384|ref|ZP_08268727.1| phosphate regulon transcriptional regulatory protein PhoB [Brevundimonas diminuta ATCC 11568] gi|328845685|gb|EGF95249.1| phosphate regulon transcriptional regulatory protein PhoB [Brevundimonas diminuta ATCC 11568] Length = 229 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 85/168 (50%), Gaps = 6/168 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R +R ++ +P+I ++ + D+G DD + KP E+ AR+ A+ R Sbjct: 62 IEVCRRVRGRAETRNLPIIMLTARGEETDRVRGLDTGADDYMTKPFSMTELTARIRAVLR 121 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R++ ++++R I + G L E R+L++ + + G+ ++ Q+ Sbjct: 122 RIRPGLADDRVNHADIIMDRVAHRVSRAGREVHLGPTEFRLLDHFLKHPGRVFSREQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 A++G D VE V+ H+ +LRK L + +P+ + R GYS+D N Sbjct: 182 AVWG-SDVYVEARTVDVHVGRLRKALNVEGTVNPIRTVRSAGYSLDLN 228 >gi|329768935|ref|ZP_08260362.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325] gi|328836652|gb|EGF86310.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325] Length = 221 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 2/149 (1%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129 + P+I ++ +L+ + DSG DD + KP E+LAR+ + RR ++ N + Sbjct: 71 NNTPVILLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRRNYGLATNIIQIE 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + + E+ L +E +LEYLM N+G +++ QI + ++ E N+ Sbjct: 131 DVVLDISKKQVTKSKELIDLTGKEYEVLEYLMKNKGSILSRDQILNHVWDYNYEGA-SNI 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ I +RKKL N + +KR LGY Sbjct: 190 VDVIIKNIRKKLSNGEDSTIIYTKRGLGY 218 >gi|323139869|ref|ZP_08074898.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] gi|322394879|gb|EFX97451.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] Length = 225 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 2/159 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 LP I + ++ ++ SL ++ D+G DD + KP E+LAR+ A RR + Sbjct: 63 LPEIRTLRPNIRVLMVTALRSLDDRVNGLDAGADDYLIKPFAPDELLARIRASLRRPGAA 122 Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + +V+G L +RE +LE LM G+ V T + IYGL Sbjct: 123 PIPPVVLGQLSFDLNLHEAQVRGRALALHKRELLLLETLMRRAGRAVTYTVLIDEIYGL- 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE V+ + ++ +S+LR+KLR+ + + R +GY I Sbjct: 182 DEQVQNDALKMLVSRLRQKLRDADAGVEIYATRSVGYMI 220 >gi|298241831|ref|ZP_06965638.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554885|gb|EFH88749.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 244 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 94/195 (48%), Gaps = 19/195 (9%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 EWL+ + D+ ++ L KG +L + +R ++ I++ ++Q + +SGV Sbjct: 39 EWLEQ--QPDLVIVDPVL--KGVDILGMCEDLRTKHDTLVLVITEGKNVQDEIRCLESGV 94 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLP 150 DD + KP ++LAR+ A+ RR + + R + GP+ + S + ++G+ L Sbjct: 95 DDYLRKPFFPSQLLARIRAVSRRARSTLERRPSSVLTVGPVCIDSLHNEARIRGKTVHLT 154 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 E ++L L N QI + ++G +D + +V++HI + LR K+ DP Sbjct: 155 PTESKLLHLLAMNANDVCTANQIVTHVWG-YDGDGDTCLVKAHI----RHLRQKVELDPS 209 Query: 211 DSKRFL-----GYSI 220 + L GY++ Sbjct: 210 NPHSILTVTGVGYTL 224 >gi|289450569|ref|YP_003475161.1| response regulator receiver domain-containing protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185116|gb|ADC91541.1| response regulator receiver domain protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 232 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 19/209 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEF--EEWLQSSAREDVSAIEAF-----------LIGK 56 + K +I + DD V E SL F E + SSA AIE F ++ Sbjct: 1 MAKGPHILICDDDPVVHESL-SLYFDNEGFKHSSAYNGSEAIEHFHSDNPDLIVLDMMMP 59 Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 +++ R IR S VP+I ++ + + G DD + KP RE++AR+ A+ Sbjct: 60 EMNGVDVCREIRRMSNVPIIMLTAKSEEIDKVVCLEIGADDYITKPFSVREVVARIKAVL 119 Query: 117 RRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR+ S++ + + + +V+GEV P +E IL L +N GK +++ Sbjct: 120 RRITETPVTSSDCLKLPDLELTPFNYQVKVRGEVVPFTPKEFEILYMLASNPGKVISRED 179 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I I+G E + +++H+ ++R+K+ Sbjct: 180 IMQKIWGYNYEG-DLRTIDTHVKRIRQKI 207 >gi|84515126|ref|ZP_01002489.1| two-component response regulator [Loktanella vestfoldensis SKA53] gi|84511285|gb|EAQ07739.1| two-component response regulator [Loktanella vestfoldensis SKA53] Length = 216 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 65/218 (29%), Positives = 100/218 (45%), Gaps = 28/218 (12%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIR 68 LV +GY DDG++ E L S D ++ L G+ G +VL+ R Sbjct: 16 LVTEGYAVDIADDGIAAEA---------LGVSQPYDTIVLDMGLPGRDGMQVLKNWRA-- 64 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A + P++ +S +D D+G DD + KP H E+ AR+ A+ RR + Sbjct: 65 AGMRAPVLILSARDGWTERVDGLDAGADDYLTKPFHMPELSARLRAMIRR-----KSEQA 119 Query: 129 GPI----RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 P+ V D R +V G+ L +E +L YL + G+ V++T++ IY D Sbjct: 120 SPVFERDDVVFDSRINQVMVAGQGISLTAQELAVLSYLFHHAGRLVSRTELSQHIYH-HD 178 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E N + I+ +LRNKLG +D+ R GY I Sbjct: 179 GERESNTIVVFIN----RLRNKLGDSLIDTVRGRGYMI 212 >gi|268609558|ref|ZP_06143285.1| two component transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 235 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 92/198 (46%), Gaps = 19/198 (9%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L KDGY L DG ++ F +L D+ ++ L GK ++ R IR Sbjct: 26 LEKDGYSVLLCHDGDDAVVKFKALS----------PDMVLLDIMLPGKDG--WQVCREIR 73 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 S VP+I I+ + + G DD + KP +E++AR+ A+ RR+ + E Sbjct: 74 KISNVPIIMITAKGETIDKVIGLELGADDYIVKPFDAKEVIARINAVTRRVGTGISEPEQ 133 Query: 129 GPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + V D + +V G++ P +E +L YL +N + + Q+ ++G F+ Sbjct: 134 KEVHYDKLSVNMDSYELKVNGKIIDTPPKELELLYYLASNPNRVYTRDQLLDEVWG-FEY 192 Query: 184 AVEENVVESHISKLRKKL 201 + ++ HI +LR+KL Sbjct: 193 YGDSRTIDVHIKRLREKL 210 >gi|163758090|ref|ZP_02165178.1| DNA-binding response regulator [Hoeflea phototrophica DFL-43] gi|162284379|gb|EDQ34662.1| DNA-binding response regulator [Hoeflea phototrophica DFL-43] Length = 223 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 98/209 (46%), Gaps = 14/209 (6%) Query: 23 GVSLEGFNSLEFEE----WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGI 78 G+S EG+ SL +E L+++ RE AI L+ G E+ R +RA I + Sbjct: 19 GLSAEGY-SLTWEANGRAGLETARREQFDAIILDLMLPGMDGREICRRLRAEGVSTKILM 77 Query: 79 SDYPSLQTTLDFFDS---GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---TGPIR 132 +L+TT D G DD ++KP E+ AR+ + R L + G ++ Sbjct: 78 --LTALETTADLVKGLRMGADDYLSKPFAFDELTARLEVLTRGLPATRQPPHILSAGLLQ 135 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + + E G L E +LE LM RGK V + +I ++G D+ NV++ Sbjct: 136 LDTAAVQSEFDGVPVALTSLEHGLLELLMEERGKVVTRARILKRVWG-TDQDPLTNVIDV 194 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ +LR KL++ D + + R GY +D Sbjct: 195 YVRRLRSKLKSAGAPDMITTVRGRGYRLD 223 >gi|119963579|ref|YP_946689.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119950438|gb|ABM09349.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 220 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 14/174 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G E+ R +R S VP+I ++ S + + G DD V KP RE++ARV A+ Sbjct: 51 GTPGTEVCRQLRQRSSVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVL 110 Query: 117 RRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR ++ + + GP+R+ + V G LP +E +LE L+ N G+ + + Q Sbjct: 111 RRQGEPEELITSTVQAGPVRMDIERHVVSVNGVQVSLPLKEFELLEMLLRNSGRVLTRGQ 170 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 + ++G D + ++ H+ K+LR+K+ DP + R LGY + Sbjct: 171 LIDRVWG-SDYVGDTKTLDVHV----KRLRSKIEPDPSAPRYLVTVRGLGYKFE 219 >gi|254248187|ref|ZP_04941507.1| hypothetical protein BCPG_03014 [Burkholderia cenocepacia PC184] gi|124874688|gb|EAY64678.1| hypothetical protein BCPG_03014 [Burkholderia cenocepacia PC184] Length = 134 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 13/129 (10%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFP 148 G DD + KP E+ AR+ + RR + + +T GP+++ R GE Sbjct: 3 GGGDDYLTKPFDPEEMAARLEVLLRRSQAAPATFDTTLVVGPLKLDLISRKAFRDGEEIV 62 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGF 207 L E R+LEY+M N G+ + +T +F A++G FD N++E H+ +LR+K+ Sbjct: 63 LLPTEYRVLEYMMRNAGQTITRTMLFEAVWGYHFDPGT--NLIEVHMGRLRRKI------ 114 Query: 208 DPVDSKRFL 216 DP D+K+ + Sbjct: 115 DPSDAKQMI 123 >gi|149279033|ref|ZP_01885167.1| two-component system response regulator [Pedobacter sp. BAL39] gi|149230312|gb|EDM35697.1| two-component system response regulator [Pedobacter sp. BAL39] Length = 232 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 92/185 (49%), Gaps = 5/185 (2%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVD 96 L+ + + D I ++ G +++ R IR ++ VP++ ++ S + + DSG D Sbjct: 37 LEMAMKHDFDLIILDIMLSGMNGIQVCREIRKGNNNVPVLMLTALSSTENIITGLDSGAD 96 Query: 97 DVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRE 153 D + KP E+ AR+ ++ RR KV ++ T I V + + G+ L E Sbjct: 97 DYLVKPFKFAELEARIRSLVRRSKVVSSPRSTQSISGLEVDTLAKTVSRDGKTINLTATE 156 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 R+LEY + N+ +++ QI ++ + D + NVV+ +I+ LRKK+ N + + Sbjct: 157 YRLLEYFIQNQNVVLSRIQILENVWDI-DFNMGTNVVDVYINYLRKKIDNGYQTKLIHTV 215 Query: 214 RFLGY 218 +GY Sbjct: 216 FGMGY 220 >gi|89893594|ref|YP_517081.1| hypothetical protein DSY0848 [Desulfitobacterium hafniense Y51] gi|89333042|dbj|BAE82637.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 83/158 (52%), Gaps = 17/158 (10%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP+I ++ L+ ++ F+ G DD ++KP RE++ARV A+ RR + Sbjct: 61 EICKEIRKISAVPIIMLTAKIELEDRIEGFNMGADDYISKPFSPREVVARVKAVLRRTDI 120 Query: 122 SNNRAETGPI-RVFS-------DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKT 171 ET P+ V S D EV+ EV PL E +IL L G+ ++ Sbjct: 121 -----ETSPLAEVISYDNGLVIDNSRHEVRFNKEVIPLTPTEFKILGSLAKYPGRVYSRG 175 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 Q+ + G D ++ V+++HI KLR+KL K+ DP Sbjct: 176 QLVEIVQG-HDFGGDDRVIDAHIKKLRQKLE-KVPSDP 211 >gi|326408629|gb|ADZ65694.1| Transcriptional regulatory protein PHOP [Brucella melitensis M28] gi|326538351|gb|ADZ86566.1| two component transcriptional regulator, winged helix family protein [Brucella melitensis M5-90] Length = 229 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 78/155 (50%), Gaps = 8/155 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 R+ +P++ ++ + D+G DD V KP H E+L R+ A+ RR +++ Sbjct: 68 RSGRTIPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLTRLRALIRRAAGHASSEF 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 GP+ + + + G L E R+L Y+M + + V++T++ +Y FD Sbjct: 128 VCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYDQDFDR-- 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E + +LRK K+G D +++ R +GY + Sbjct: 186 DSNTIEVFVGRLRK----KMGVDLIETVRGMGYRM 216 >gi|313116090|ref|ZP_07801513.1| putative regulatory protein VanR [Faecalibacterium cf. prausnitzii KLE1255] gi|310621596|gb|EFQ05128.1| putative regulatory protein VanR [Faecalibacterium cf. prausnitzii KLE1255] Length = 227 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 4/139 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-- 124 +R S VP+I IS + Q +D G DD + KP E+LAR+ + RR++ + Sbjct: 66 VRECSTVPIIVISAKGTTQNKVDLLRLGADDYITKPFDMEEVLARIESNLRRVQFQKDNP 125 Query: 125 -RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 G + + + +QG L +E ILE LM K +K +F +++ + Sbjct: 126 THLRHGDLVLDLNDNTAFLQGSELTLTAKEFAILELLMKYPDKIFSKANLFQSVWNA-EY 184 Query: 184 AVEENVVESHISKLRKKLR 202 E+N + HIS LR KL+ Sbjct: 185 ISEDNTLNVHISNLRNKLK 203 >gi|239638181|ref|ZP_04679133.1| heme response regulator HssR [Staphylococcus warneri L37603] gi|239596202|gb|EEQ78747.1| heme response regulator HssR [Staphylococcus warneri L37603] Length = 224 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/180 (23%), Positives = 89/180 (49%), Gaps = 4/180 (2%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 D++ ++ + G EL +I+ +P+I ++ +L F SG DD + KP Sbjct: 47 DIAIVDIMM--HGMDGFELCHMIKEVYDLPVIMLTARDALSDKERAFISGTDDYLTKPFE 104 Query: 105 HREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163 +E++ R+ A+ RR + + T G + + + V G+ LP +E ++L L +N Sbjct: 105 VKELIYRIKAVLRRYHIHADETLTIGNLTLHQAYMEVVVNGKTMTLPNKEFQLLFLLASN 164 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + ++T + I+G +D +E ++ HI +LR++L+ + + R GY ++ + Sbjct: 165 EKQIFSRTHLIEKIWG-YDYEGDERTIDVHIKRLRQRLQQLDSDVTIKTVRGQGYKVEHH 223 >gi|322389821|ref|ZP_08063363.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321143481|gb|EFX38917.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 217 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP++ ++ + L F D + KP + R+ AI+++L+ Sbjct: 60 LEVLKTIRKTSSVPVLMLTAFHDEDYKLTAFGEMADGYLEKPFSLSLLKVRIEAIFKKLQ 119 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S R T G RV + + G+ + +E ILEYL+ + GK ++QI A++ Sbjct: 120 PS--RVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWK 177 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL D + + R +GY ++ Sbjct: 178 ETEEIPFDRVIDVYIKELRKKLE----LDCIVTVRNVGYKLE 215 >gi|315499028|ref|YP_004087832.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] gi|315417040|gb|ADU13681.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] Length = 226 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 16/169 (9%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VLE R R P++ ++ + + FD+G DD + KP H E+LAR+ A+ Sbjct: 59 GVSVLE--RWRRDGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALV 116 Query: 117 RRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR + A+ G +R+ V GE L E R+L Y+M ++ + +++T+ Sbjct: 117 RR---AAGHAQPLLVCGGVRLDPRAARASVNGEPLRLTSLEYRLLHYMMLHQSRVISRTE 173 Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +Y FD + N +E + +LRK K+G + +++ R LGY + Sbjct: 174 LVEHLYDQDFDR--DSNTIEVFMGRLRK----KIGTERIETVRGLGYRL 216 >gi|222528319|ref|YP_002572201.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222455166|gb|ACM59428.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] Length = 225 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 80/150 (53%), Gaps = 2/150 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGP 130 Q P++ ++ S++ + D+G DD + KP E+LARV A+ RR ++ + + Sbjct: 72 QTPVLCLTAKDSIEDRVTGLDAGADDYLVKPFSFDELLARVRALLRRYSQIKDPIIQIKD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + ++ R G+V L +E +LEYL N+G+ + ++QI ++ +D N+V Sbjct: 132 LVIDTNSRKVTRAGKVIDLTSKEYSVLEYLARNKGRVLTRSQIAEHVWN-YDFEGTSNIV 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +I LR+K+ + + + R +GY + Sbjct: 191 DVYIRYLRRKIDDGFPEKLIHTIRGVGYML 220 >gi|188590358|ref|YP_001920454.1| DNA-binding response regulator [Clostridium botulinum E3 str. Alaska E43] gi|188500639|gb|ACD53775.1| DNA-binding response regulator [Clostridium botulinum E3 str. Alaska E43] Length = 222 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 3/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124 IR HS +P+I ++ S + G DD + KP + ++AR+ A+ RR +SN+ Sbjct: 67 IRKHSNIPIIFVTSRDSNMDEIMSMTVGGDDFITKPYDSQILIARITAVLRRSYNNLSND 126 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E + + + Q + L + E +IL L+ N+G V + + + ++ D Sbjct: 127 ILEYKGVGLNLGKGNVTYQNKTIDLTKNELKILHNLLQNKGSIVTRDDLMNYLWN-DDVF 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + +I++LRKKL D ++++R LGY I Sbjct: 186 LDDNTLTVNINRLRKKLEEINIIDFIETRRGLGYII 221 >gi|159028847|emb|CAO90652.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 230 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 105/215 (48%), Gaps = 7/215 (3%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL + Y+ DG EG+N LE ++ + + L+ + + E + Sbjct: 19 ALSERQYVVDVARDGE--EGWNWLELGKYDLLVLDVTLPKLSGTLLCQRLRRAESHHPVS 76 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127 A++ VP++ ++ ++ +D D+G DD V KP E++AR+ A+ RR S+ Sbjct: 77 ANATVPVLLLTARDTVIDKIDGLDAGADDYVTKPFDLGELMARIRALIRRGSSTSSVLLS 136 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G +++ + G++ L +E +LE L+ + + ++++ I ++ L D EE Sbjct: 137 WGGLQLNPSTHEASYNGQLLSLTPKEFALLELLVTHGRRVLSRSGIIERVWSLDDSPAEE 196 Query: 188 NVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220 V SHI LR KL++ LG D +++ LGY + Sbjct: 197 TVT-SHIRGLRHKLKS-LGAPEDFIETVHGLGYRL 229 >gi|153854281|ref|ZP_01995580.1| hypothetical protein DORLON_01575 [Dorea longicatena DSM 13814] gi|149753056|gb|EDM62987.1| hypothetical protein DORLON_01575 [Dorea longicatena DSM 13814] Length = 236 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127 A Q+P++ I+ S F SG DD + KP++ E++ RV A+ RR ++ N ++ Sbjct: 83 AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G D E LP++E +L L A+ G+ K Q+ ++G EA + Sbjct: 143 IGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYETEA-DP 201 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +E HI ++R++ ++ F+ V + R +GY + Sbjct: 202 HTIEVHIGRIRERFKDNPDFEIV-TMRGIGYKV 233 >gi|124268353|ref|YP_001022357.1| two component transcriptional regulator [Methylibium petroleiphilum PM1] gi|124261128|gb|ABM96122.1| two component transcriptional regulator, winged helix family [Methylibium petroleiphilum PM1] Length = 266 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ S +P++ ++ +++ + + G DD + KP E++ARV + RR + Sbjct: 100 LRRVREQGSTLPVLMLTARDAIEDRVHGLEMGADDYLVKPFALAELIARVKVLTRRHQAR 159 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G +R+ + + + L RE +LEYL++ G V K QI AI G + Sbjct: 160 QGSVLSMGGLRMDLEANRAWIGEQPLDLSAREWAVLEYLLSRVGHVVGKEQILQAISG-W 218 Query: 182 DEAVEENVVESHISKLRKKL 201 D+A+ EN VE ++S+LR K+ Sbjct: 219 DDALSENAVEVYVSRLRPKI 238 >gi|119718265|ref|YP_925230.1| response regulator receiver [Nocardioides sp. JS614] gi|119538926|gb|ABL83543.1| response regulator receiver [Nocardioides sp. JS614] Length = 225 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 7/165 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R IR S VP+I +S + + G DD V KP RE++AR+ A+ RR + Sbjct: 62 EVCRQIRQTSSVPVIMVSAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGQE 121 Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ E GP+R+ + V G+ LP +E +LE + N G+ + + Q+ ++ Sbjct: 122 PDLAPPTLEAGPVRMDVERHVVTVDGQAQRLPLKEFELLEMFLRNPGRVLTRGQLIDRVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221 G D + ++ H+ +LR K+ G +P + + R LGY D Sbjct: 182 G-SDYVGDTKTLDVHVKRLRAKIEPDPG-EPRYLVTVRGLGYKFD 224 >gi|257785036|ref|YP_003180253.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] gi|257473543|gb|ACV51662.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] Length = 224 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 5/163 (3%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R R+ +P++ ++ L ++ D+G DD + KP E+LAR+ A+ RR Sbjct: 61 EVSRKARSKGITIPILMLTAKSQLDDKVEGLDNGADDYLTKPFQTAELLARLRALGRRSS 120 Query: 121 -VSNNRAETGPIRVFSDGRD--PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N G + + S E G+ L +E RILEY++ N G+ + + Q+ I Sbjct: 121 SFQENVLCFGDLSLDSTTATLTCETSGQSVRLSEKELRILEYMIGNHGRIMTRDQLAIKI 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G F+ E N VE ++S RKKL + + R LGY + Sbjct: 181 WG-FESDAEYNNVEVYMSFTRKKLAFIGSTVEIKAVRGLGYEL 222 >gi|242372014|ref|ZP_04817588.1| hemin DNA-binding response regulator [Staphylococcus epidermidis M23864:W1] gi|242350283|gb|EES41884.1| hemin DNA-binding response regulator [Staphylococcus epidermidis M23864:W1] Length = 234 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 94/199 (47%), Gaps = 8/199 (4%) Query: 26 LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85 L G +L F E +E+V ++ KG EL + ++ ++P+I ++ +L Sbjct: 42 LSGETALHFLE------KENVDIAIVDIMMKGMDGFELCQKLKEDYELPVIMLTARDALS 95 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQG 144 F SG DD V KP +E+L R+ A+ RR ++ + + + G + + + V Sbjct: 96 DKERAFLSGTDDYVTKPFEVKELLFRIKAVLRRYQINAESELKLGNLTLNQSYMELSVDS 155 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 + LP +E +++ L++N + I I+G FD ++ V+ HI +LRK+L Sbjct: 156 KTVNLPNKEFQLIFLLVSNPKHIFTRDDIIEKIWG-FDYEGDDRTVDVHIKRLRKRLMQL 214 Query: 205 LGFDPVDSKRFLGYSIDWN 223 + + R GY + N Sbjct: 215 EASVSIHTVRGQGYMVSQN 233 >gi|182420008|ref|ZP_02951242.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237669491|ref|ZP_04529471.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376045|gb|EDT73632.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237654935|gb|EEP52495.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 228 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 18/151 (11%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR + P+I I+ + + G DD + KP +E+LARV A+ RR Sbjct: 65 IDVLKWIRKQGERPVIMITAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYS 124 Query: 121 VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 V N++ + + +V DG+D +P +E +L YL +N+ K + Sbjct: 125 VDNDKNQVIKLSDLVIDSTSYKVIYDGKD-------IKMPPKEFELLYYLASNKNKVFTR 177 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q+ ++G +D + V+ H+ +LR+KL Sbjct: 178 EQLLCEVWG-YDYPGDSRTVDVHVKRLREKL 207 >gi|319891657|ref|YP_004148532.1| Two-component response regulator BceR [Staphylococcus pseudintermedius HKU10-03] gi|317161353|gb|ADV04896.1| Two-component response regulator BceR [Staphylococcus pseudintermedius HKU10-03] gi|323465173|gb|ADX77326.1| two-component response regulator [Staphylococcus pseudintermedius ED99] Length = 226 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 76/143 (53%), Gaps = 9/143 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR HS VP+I IS S + + G DD V KP H ++A++ AI+RR+ N Sbjct: 64 RQIRQHSSVPIIFISSRDSPMDQVMSMEIGADDYVQKPFHMPVLIAKLQAIFRRVYQYNQ 123 Query: 125 RAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I +S G + Q V L + E ILE L+ ++ + VA+ + +A++ Sbjct: 124 QERRTMIWQEAVVDWSKGTVTK-QDHVTYLSKTEMLILEVLLQHKNEIVAREDLMTALWD 182 Query: 180 LFDEA-VEENVVESHISKLRKKL 201 DEA V +N + ++++LRKKL Sbjct: 183 --DEAFVSDNTLTVNVNRLRKKL 203 >gi|312868775|ref|ZP_07728967.1| response regulator ArlR [Lactobacillus oris PB013-T2-3] gi|311095761|gb|EFQ54013.1| response regulator ArlR [Lactobacillus oris PB013-T2-3] Length = 228 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 8/167 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R P+I ++ S+ + D G DD + KP E+LARV A+ RR+ Sbjct: 61 IEVARRVRELKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRIS 120 Query: 121 VS--NNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + NN+ + + + R EV L +RE +L LM N +++ ++ Sbjct: 121 IEDGNNKEHQTTVNYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKEL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 S ++G +D VE NVV+ +I LR K+ + + R GY I Sbjct: 181 LSKVWG-YDSKVETNVVDVYIRYLRNKIDRSGEKSYIQTVRGTGYVI 226 >gi|219683667|ref|YP_002470050.1| response regulator [Bifidobacterium animalis subsp. lactis AD011] gi|219621317|gb|ACL29474.1| response regulator [Bifidobacterium animalis subsp. lactis AD011] Length = 245 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 20/143 (13%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI------RVFSDGRDPEVQGEVF 147 G DD V KP E++AR+ AI RR + + E PI + D D G+ Sbjct: 100 GGDDYVTKPFSLEEVVARIRAILRR---TREQVEDDPIIRVGDLEINEDSHDVTRAGQTI 156 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E ++L YLM N G+ ++K QI ++ +D + +VES+IS LRKK+ + Sbjct: 157 DLSSTEYKLLRYLMDNEGRVLSKAQILDHVWQ-YDWGGDAAIVESYISYLRKKVDDVTVT 215 Query: 208 DP----------VDSKRFLGYSI 220 D +++KR +GY I Sbjct: 216 DEDGSTHKVTPLIETKRGIGYMI 238 >gi|55820941|ref|YP_139383.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55736926|gb|AAV60568.1| response regulator (homolog to spaR Bsu & DvnR Cdi) [Streptococcus thermophilus LMG 18311] Length = 219 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 5/164 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L+ IR P++ I+ + G DD + KP +E+ ARVAA RR Sbjct: 60 LQFCHEIRNQVDCPILFITAKTQEADIVQGLSYGADDYICKPFGIKELQARVAAHLRREH 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +++ G + ++ ++ ++ L + E I ++L N+G+ +K QI++ +YG Sbjct: 120 RERHHKLSLGEFQFDLSAQELYIENQLLDLTKSEYGICQFLAENKGQVFSKEQIYTHLYG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D+ V E HI +R KL+ ++G +P+++ +GY W+ Sbjct: 180 YEDKGSPAAVAE-HIKNIRAKLK-EVGQNPIETVWGIGYK--WH 219 >gi|90425783|ref|YP_534153.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90107797|gb|ABD89834.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB18] Length = 221 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 14/157 (8%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A +P++ ++ S + + G DD + KP E+LAR+ A+ RR ++ A T Sbjct: 69 AKRAMPVLILTARASWREKVTGLREGADDYLTKPFEIEELLARIEALIRR---ASGHA-T 124 Query: 129 GPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 I V DP Q G L E R L YLM + K V+KT++ IYG D+ Sbjct: 125 AEISVAGLRLDPSTQRISRDGAPLDLTALEYRALAYLMMHPAKVVSKTELTEHIYGQDDD 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV+E +++LRK K+G D + ++R GY + Sbjct: 185 R-DSNVIEVLVNRLRK----KIGADAIRTRRGQGYQL 216 >gi|304407986|ref|ZP_07389636.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343005|gb|EFM08849.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 241 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 10/158 (6%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----- 126 + P+I ++ + + + G DD + KP E+LARV+A+ RR ++ +A Sbjct: 74 RTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQLDEGKATVESN 133 Query: 127 ----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 G + +F + + + GE PL +E +L YL+ G V + + + ++G FD Sbjct: 134 EKVISAGELSIFPEKYEVILNGESVPLRPKEFEVLLYLVQRPGMVVTRDDLMNIVWG-FD 192 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + V+ H+S LRKKL ++S R +GY + Sbjct: 193 YIGGQRTVDVHVSSLRKKLELGQQSVQIESIRGVGYKL 230 >gi|291546162|emb|CBL19270.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 223 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 4/161 (2%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R +R A +P++ ++ + F SG DD + KP++ E++ RV A+ RR + Sbjct: 62 ELVRSLRDAGDSIPVLMVTAKDAFDDMRMGFLSGSDDYMVKPVNINELVLRVGALLRRAQ 121 Query: 121 VSNNRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N R + G + D E LP++E +L +++ GK + Q+ I+G Sbjct: 122 MINERKQRIGDTILECDSLTVSTSSESMVLPQKEFMLLYKMVSFPGKIFTRQQLMDDIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D A + + V+ HI +LR++ R+ F V + R +GY + Sbjct: 182 -YDSASDAHTVDVHIGRLRERFRDNPDFKIV-TIRGVGYKV 220 >gi|264676158|ref|YP_003276064.1| two component transcriptional regulator [Comamonas testosteroni CNB-2] gi|299531179|ref|ZP_07044591.1| two component transcriptional regulator [Comamonas testosteroni S44] gi|262206670|gb|ACY30768.1| two component transcriptional regulator [Comamonas testosteroni CNB-2] gi|298720882|gb|EFI61827.1| two component transcriptional regulator [Comamonas testosteroni S44] Length = 234 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 100/213 (46%), Gaps = 17/213 (7%) Query: 12 KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71 + ++++ GD ++G E W DV ++ L G L++ + +R+ Sbjct: 24 QGAHVSVCGD---GVQGIAQAVGENW-------DVIILDRML-PNGFDGLQILQTLRSMG 72 Query: 72 -QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAET 128 Q P++ +S + + +G DD + KP E+ AR+ A+ RR ++ + Sbjct: 73 KQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQIPAPTREMQV 132 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187 +RV R E G+ L RE R+L +LM + + V +T + +++ FD + Sbjct: 133 ADLRVNLISRSAERAGQPLSLQPREFRLLAFLMQHAHQIVTRTMLLESVWDYRFDP--QT 190 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NV++ HIS+LR K+ + + R +GYS+ Sbjct: 191 NVIDVHISRLRSKVDKGFATPLIHTVRGVGYSL 223 >gi|326202201|ref|ZP_08192071.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987996|gb|EGD48822.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 217 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 4/156 (2%) Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +I ++ P I +S S+ + F G DD + KP E+LARV A+ RR + + + Sbjct: 63 VIEQANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQRTASC 122 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E G +++ G+ +E +LE L+ NR +++ ++ ++G +D Sbjct: 123 FEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVWG-YDFEG 181 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V+ HI KLRKKL + D + + LGY ++ Sbjct: 182 DTRTVDVHIQKLRKKLEWE---DRIKTVYKLGYRLE 214 >gi|304318103|ref|YP_003853248.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779605|gb|ADL70164.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 224 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/205 (23%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +IDD ++D + +G +++ F++ E + L++ ++ + ++ G Sbjct: 4 LIYIIDDDKNIRDLMVKYVEKEGYNVKAFDNAE--DVLENFNKDKPDMLILDIMMPGMDG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + IR S VP+I +S + + G DD + KP RE++AR+ +++RR+K Sbjct: 62 YELCKEIRKISDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRRVK 121 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + +N I + D R GE E ++++L N K + Q+ ++ Sbjct: 122 MPKRSNEIRIKDIVIVPDERKVLYNGEEMSFTSMEFELIQFLAKNANKAFTREQLLEKVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203 +D E V+ + ++RKKL++ Sbjct: 182 K-YDSFTETRAVDDMVKRVRKKLQS 205 >gi|225016728|ref|ZP_03705920.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum DSM 5476] gi|224950532|gb|EEG31741.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum DSM 5476] Length = 230 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 97/199 (48%), Gaps = 21/199 (10%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRII 67 L K+GY + DG +L FN+L + D ++ L G G +V R I Sbjct: 23 LEKEGYGVILSHDGEEALVKFNAL----------KPDFVLLDVMLPGLDGWQVC---REI 69 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R S VP+I ++ + + G DD V KP +EI+AR+ AI+RRL SN +AE Sbjct: 70 RKKSNVPVIMLTAKGETFDKVLGLELGADDYVVKPFDTKEIIARIKAIHRRLGQSNQQAE 129 Query: 128 TGPI----RVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + V + R + +V G+V P +E +L +L + + + Q+ ++G F+ Sbjct: 130 VKEVVYDKLVVNMTRYELKVDGKVVDTPPKELELLFHLASTPNRVYTRDQLLDEVWG-FE 188 Query: 183 EAVEENVVESHISKLRKKL 201 + ++ H+ +LR+KL Sbjct: 189 YYGDSRTIDVHVKRLREKL 207 >gi|55822861|ref|YP_141302.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|116627727|ref|YP_820346.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|55738846|gb|AAV62487.1| response regulator (homolog to spaR Bsu & DvnR Cdi) [Streptococcus thermophilus CNRZ1066] gi|116101004|gb|ABJ66150.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] gi|312278275|gb|ADQ62932.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Streptococcus thermophilus ND03] Length = 219 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 5/164 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L+ IR P++ I+ + G DD + KP +E+ ARVAA RR Sbjct: 60 LQFCHEIRNQVDCPILFITAKTQEADIVQGLSYGADDYICKPFGVKELQARVAAHLRREH 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +++ G + ++ ++ ++ L + E I ++L N+G+ +K QI++ +YG Sbjct: 120 RERHHKLSLGEFQFDLSAQELYIENQLLDLTKSEYGICQFLAENKGQVFSKEQIYTHLYG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D+ V E HI +R KL+ ++G +P+++ +GY W+ Sbjct: 180 YEDKGSPAAVAE-HIKNIRAKLK-EVGQNPIETVWGIGYK--WH 219 >gi|322804538|emb|CBZ02089.1| two-component response regulator YvcP [Clostridium botulinum H04402 065] Length = 258 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 84/159 (52%), Gaps = 6/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR HS+VP+I IS S + ++G DD + KP + +LA++ + RR+ S + Sbjct: 93 IRNHSKVPIIFISARDSDMDQVMAIENGGDDFITKPFSYYVLLAKIKGVLRRVYGSYAKN 152 Query: 127 ET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +T G + ++++ E +G L + E +L YL+ N K V++ + ++ Sbjct: 153 DTDFLKIGDLILYTNKSILEFKGRKTELSKNEFSLLLYLLKNINKIVSRDTLLEILWSDT 212 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +++N + ++++LRK+L + +++KR GY + Sbjct: 213 D-FIDDNTLSVNVTRLRKRLEEVGITNAIETKRGQGYML 250 >gi|71906215|ref|YP_283802.1| two component transcriptional regulator [Dechloromonas aromatica RCB] gi|71845836|gb|AAZ45332.1| two component transcriptional regulator, winged helix family [Dechloromonas aromatica RCB] Length = 227 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 75/142 (52%), Gaps = 3/142 (2%) Query: 62 ELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 E+ + +R H +VP++ + + D G DD V KPI + E LARV ++ RR Sbjct: 61 EVLKQVREHCGWEVPVLFCTARTDEEAAADILRLGADDYVPKPIRYMEFLARVQSLLRRR 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K ++ G I + +GR + G L +RE + L+ N G+ +++ ++ ++++ Sbjct: 121 KPRSSTLRFGSIEIDLEGRRICLGGLDVELTQREFELAVILLRNVGRVLSREELLTSVWS 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 + V+ V++H S+LRKKL Sbjct: 181 K-EAGVDTRTVDTHASRLRKKL 201 >gi|296117440|ref|ZP_06836028.1| two component transcriptional regulator, winged helix family protein [Gluconacetobacter hansenii ATCC 23769] gi|295976042|gb|EFG82832.1| two component transcriptional regulator, winged helix family protein [Gluconacetobacter hansenii ATCC 23769] Length = 226 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 18/194 (9%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGV 95 +L S + D+ ++ L G G L L IRA + P++ +S + + +G Sbjct: 38 FLAVSEKFDLIILDRMLPG-GIDGLRLLETIRAQNNATPVLLLSALADVDDRVQGLKAGG 96 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR--VFSD------GRDPEVQGEVF 147 DD V KP E+LARV A+ RR R E P V +D R G+ Sbjct: 97 DDYVTKPFAFSELLARVEALGRR-----GRTEQAPQTKLVVADLEIDLLSRTVRRAGQKI 151 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLG 206 L RE R+LEYL + G+ V +T + ++ FD + NV++ H+S+LR+K+ G Sbjct: 152 DLQPREFRLLEYLTRHAGQVVTRTMLLEGVWDYHFDP--QTNVIDVHVSRLRQKVDKPFG 209 Query: 207 FDPVDSKRFLGYSI 220 + + R GY + Sbjct: 210 MPLIHTIRNAGYML 223 >gi|118589317|ref|ZP_01546723.1| phosphate regulon transcriptional regulatory protein [Stappia aggregata IAM 12614] gi|118438017|gb|EAV44652.1| phosphate regulon transcriptional regulatory protein [Stappia aggregata IAM 12614] Length = 233 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +RA ++P+I ++ + +G DD V KP E++ARV AI R Sbjct: 61 IELCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAILR 120 Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R +V + +G I + + + L E R+LE+LM + G+ ++ Q+ Sbjct: 121 RASPEVVSTMLRSGDIELDRETHRVRRNAKEIHLGPTEFRLLEFLMTSPGRVFSREQLLD 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK L DP+ + R GY+ + Sbjct: 181 GVWG-HDVYVDERTVDVHVGRLRKALNKGKAKDPIRTVRGAGYAFN 225 >gi|83945597|ref|ZP_00957943.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii HTCC2633] gi|83850963|gb|EAP88822.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii HTCC2633] Length = 228 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 73/132 (55%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 FD+G DD + KP H E+LAR+ A+ RR S++ G + + + G + ++ L Sbjct: 91 FDAGADDYLTKPFHPEELLARLRALTRRAAGHSSSTLMCGDLSLDTRGSRVFLGDQLIKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM +R + +++T++ IY FD + N +E + +LRK K+G + Sbjct: 151 TSHEFRMLSYLMHHRDRVISRTELVEHIYDQDFDR--DSNTIEVFVGRLRK----KIGSN 204 Query: 209 PVDSKRFLGYSI 220 +++ R LGY + Sbjct: 205 RIETVRGLGYRL 216 >gi|127511517|ref|YP_001092714.1| two component transcriptional regulator [Shewanella loihica PV-4] gi|126636812|gb|ABO22455.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 224 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 19/172 (11%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G ++LE R P+I ++ ++ F++G DD + KP H +E+LAR+ A Sbjct: 57 GNGLQLLETWR--NQGIDTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHSQELLARIHA 114 Query: 115 IYRRLKVSNNRAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 + R N P + S + V + F L E R+L+ + + K Sbjct: 115 LINRAHGKTN----SPTKELSFEGVTLDESQQSVTVGEQQFELTAMEFRLLKIFLMSPKK 170 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++K Q+ +Y FD+ E NVVE +++ LRK KLG ++++R GY Sbjct: 171 LLSKAQLTDKLYQ-FDDEKESNVVEVYVTHLRK----KLGKTAIETRRGQGY 217 >gi|94314311|ref|YP_587520.1| winged helix family two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93358163|gb|ABF12251.1| two component transcriptional regulator, winged helix family ygiX [Cupriavidus metallidurans CH34] Length = 219 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 12/169 (7%) Query: 55 GKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G+G L+ R +RA S VP+I ++ + + ++G DD + KP E+ ARV+ Sbjct: 57 GRG---LDFLRELRASGSNVPIIILTALDQVSNRIAGLNAGADDYLVKPFDLSELSARVS 113 Query: 114 AIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKT 171 A+ RR + N G +R+ + G ++GE L E +LE L+ + G V++ Sbjct: 114 AVARRYAGNPNPLVNLGDLRIDTAGHSV-MRGETRVDLTASEWALLEALIQHPGMIVSRA 172 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +Y F+E V N +E H+S+LRK KLG D +++ R LGY + Sbjct: 173 RLEERLYS-FNEEVGSNTIEVHMSRLRK----KLGADVIETLRGLGYRL 216 >gi|317501849|ref|ZP_07960034.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium 8_1_57FAA] gi|331088638|ref|ZP_08337549.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896739|gb|EFV18825.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium 8_1_57FAA] gi|330407595|gb|EGG87095.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium 3_1_46FAA] Length = 225 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 79/145 (54%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 ++ R IR S+VP+I ++ + L F+ GVD+ ++KP + ++ARV AI RR Sbjct: 65 QVCREIRETSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRRTLG 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + E G I++ ++ ++ L +E +L Y + N+G +++ +I + ++ Sbjct: 125 NTAGDVIEAGDIKIDKAAHIVKINDKMIDLSYKEFELLSYFVENQGIALSREKILNNVWN 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR KL ++ Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGDR 208 >gi|323528863|ref|YP_004231015.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385865|gb|ADX57955.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 225 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + P++ ++ S+ ++ +G DD + KP RE++AR+ RR S Sbjct: 63 LRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELVARIKVAIRRQSPS 122 Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + D R ++G + RER +LE L+ GK V K + AI+ L Sbjct: 123 KASEVVCGDLAFDIDTRQFTLKGMPLNVTPRERTVLETLILRLGKTVTKPALVDAIFTLA 182 Query: 182 DEAVEENVVESHISKLRKKL 201 DE E+ VE +IS+LRKKL Sbjct: 183 DEP-SEDAVEIYISRLRKKL 201 >gi|229195595|ref|ZP_04322361.1| Two-component response regulator [Bacillus cereus m1293] gi|228587844|gb|EEK45896.1| Two-component response regulator [Bacillus cereus m1293] Length = 218 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 58 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R EV GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 118 KQEQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199 >gi|160901586|ref|YP_001567167.1| two component transcriptional regulator [Petrotoga mobilis SJ95] gi|160359230|gb|ABX30844.1| two component transcriptional regulator, winged helix family [Petrotoga mobilis SJ95] Length = 224 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 5/160 (3%) Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ IR + S + +I I+ L++ + + DD V KP EILAR+ A+ +R+ Sbjct: 62 EVAEAIRDYDSDIGIIMITAKGELESKVKGLKNA-DDYVVKPFEIEEILARIEALLKRMG 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G I ++ + V + L E IL+ L N+ V+K +I I+G Sbjct: 121 KTKELIKVGDIEIYPQNMEVLVNKKNVHLSLTEFNILKLLAINKNIVVSKEKILEEIWGY 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE N+VE +I+ LRKKL++ +++ R +GY I Sbjct: 181 YDEE-NNNLVEVYINYLRKKLKD--STQNIETVRGVGYVI 217 >gi|125717738|ref|YP_001034871.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|125497655|gb|ABN44321.1| Two-component system transcriptional regulator (CheY domain and HTH-like DNA-binding domain), putative [Streptococcus sanguinis SK36] gi|324990911|gb|EGC22846.1| DNA-binding response regulator [Streptococcus sanguinis SK353] gi|325694205|gb|EGD36121.1| DNA-binding response regulator [Streptococcus sanguinis SK150] gi|328945951|gb|EGG40098.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] gi|332359572|gb|EGJ37390.1| DNA-binding response regulator [Streptococcus sanguinis SK49] gi|332361525|gb|EGJ39329.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] gi|332362715|gb|EGJ40512.1| DNA-binding response regulator [Streptococcus sanguinis SK355] Length = 218 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 7/160 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR SQ+P++ ++ T L F+ + D V KP ++ R+ I RR Sbjct: 61 LEVLKEIRKTSQIPVMILTALDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRNT 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V++ A G + V D QGE PL ++E IL+ L +G V + Q+ + I+G Sbjct: 121 VASEIA-VGDLTVSIDDCTVYWQGEKMPLTKKEYEILQTLAKRKGHLVTRDQLMNTIWGY 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ V+++HI +RKK+ P+ + +GY + Sbjct: 180 SE--LDSRVLDNHIKNIRKKIPGV----PLKTITGMGYQL 213 >gi|300087391|ref|YP_003757913.1| winged helix family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527124|gb|ADJ25592.1| two component transcriptional regulator, winged helix family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 229 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 22/198 (11%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68 L K+GY L DG + + W Q R D+ ++ + G V RIIR Sbjct: 24 LEKEGYRVLTATDGEA-------GLKVWRQE--RPDLVVLDLMMPKLSGNDVC---RIIR 71 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126 S+ P+I ++ L + + G DD V KP RE++AR+ A+ RR + +R Sbjct: 72 QESETPVIMLTARDELTDKIVGLELGADDYVTKPFEGRELVARIKAVLRR---TEHRTFA 128 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 G + V + R ++ G+V L E +L+ + AN G+ ++++I + G E Sbjct: 129 PVLRVGELTVDVERRQADIGGKVIELTTTEFDLLKLMAANPGRVFSRSEILDRLQGDTYE 188 Query: 184 AVEENVVESHISKLRKKL 201 E ++SHI LR+K+ Sbjct: 189 GYERT-IDSHIKNLRRKI 205 >gi|327459875|gb|EGF06215.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] Length = 218 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 7/160 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR SQ+P++ ++ T L F+ + D V KP ++ R+ I RR Sbjct: 61 LEVLKEIRKTSQIPVMILTALDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRNT 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V++ A G + V D QGE PL ++E IL+ L +G V + Q+ + I+G Sbjct: 121 VASEIA-VGNLTVSIDDCTVYWQGEKMPLTKKEYEILQTLAKRKGHLVTRDQLMNTIWGY 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ V+++HI +RKK+ P+ + +GY + Sbjct: 180 SE--LDSRVLDNHIKNIRKKIPGV----PLKTITGMGYQL 213 >gi|326801362|ref|YP_004319181.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326552126|gb|ADZ80511.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 231 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 26/224 (11%) Query: 8 RALVKDGY---IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLEL 63 R L DGY IA G+ G+ + N+ D+ ++ L G G +V +L Sbjct: 20 RGLSADGYDVRIASDGELGLDMIYHNAF------------DLIVLDVMLPGISGIEVCQL 67 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R + ++ VP++ ++ + + DSG DD + KP E+ AR+ + RR +N Sbjct: 68 LR--KENNPVPILMLTALSATNNVVTGLDSGADDYMVKPFKFEELKARIRTLVRRANGTN 125 Query: 124 NRAE--TGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + IR+ D R G+ L E R+LE++M N+ K + + +I Sbjct: 126 GQQNPASSTIRIMDLVLDMDARIATRGGKEIALTATEYRLLEFMMKNKNKVLTRIEILEH 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + + + NVV+ +++ LRKK+ + + +GYSI Sbjct: 186 VWDI-NFNMGTNVVDVYVNYLRKKVDKGFDVKLIHTMIGVGYSI 228 >gi|324993173|gb|EGC25093.1| DNA-binding response regulator [Streptococcus sanguinis SK405] gi|324995524|gb|EGC27436.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|325696805|gb|EGD38693.1| DNA-binding response regulator [Streptococcus sanguinis SK160] gi|327461443|gb|EGF07774.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327473748|gb|EGF19166.1| DNA-binding response regulator [Streptococcus sanguinis SK408] gi|327489298|gb|EGF21091.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] gi|332366300|gb|EGJ44052.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] Length = 218 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 7/160 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR SQ+P++ ++ T L F+ + D V KP ++ R+ I RR Sbjct: 61 LEVLKEIRKTSQIPVMILTALDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRNT 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V++ A G + V D QGE PL ++E IL+ L +G V + Q+ + I+G Sbjct: 121 VASEIA-VGDLTVSIDDCTVYWQGEKMPLTKKEYEILQTLAKRKGHLVTRDQLMNTIWGY 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ V+++HI +RKK+ P+ + +GY + Sbjct: 180 SE--LDSRVLDNHIKNIRKKIPGV----PLKTITGMGYQL 213 >gi|323490231|ref|ZP_08095447.1| winged helix family two component transcriptional regulator [Planococcus donghaensis MPA1U2] gi|323396071|gb|EGA88901.1| winged helix family two component transcriptional regulator [Planococcus donghaensis MPA1U2] Length = 231 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 27/224 (12%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L+K GY + +DG F +L E + D+ ++ + G LE+ R IR Sbjct: 23 LLKKGYEVVQAEDG-----FQALALLE----KEKPDLILLDVEM--PGMDGLEVCRRIRL 71 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 + +P++ +S L + ++G DD + KP E+ AR+ AI RR NN + Sbjct: 72 KTTLPILFVSYRKELVYKIQGLEAGGDDYITKPFDFNELEARIRAILRRNGWRNNVEDQL 131 Query: 130 PI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 I + D R+ ++G L +E ++L L + Q++ ++G + E Sbjct: 132 TILKYKDLHIHVDARELYLEGAQVKLYHKEFQLLLLLAQTPNRVWTAEQLYDQVWGYYSE 191 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSIDW 222 + V+ HISKLRKK+ DP + + R GY W Sbjct: 192 G-DVQTVKVHISKLRKKIEK----DPANPEFIQTVRGFGYKFIW 230 >gi|168182114|ref|ZP_02616778.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|182674615|gb|EDT86576.1| DNA-binding response regulator [Clostridium botulinum Bf] Length = 232 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 84/159 (52%), Gaps = 6/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR HS+VP+I IS S + ++G DD + KP + +LA++ + RR+ S + Sbjct: 67 IRNHSKVPIIFISARDSDMDQVMAIENGGDDFITKPFSYYVLLAKIKGVLRRVYGSYAKN 126 Query: 127 ET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +T G + ++++ E +G L + E +L YL+ N K V++ + ++ Sbjct: 127 DTDFLKIGDLILYTNKSILEFKGRKTELSKNEFSLLLYLLKNINKIVSRDTLLEILWSDT 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +++N + ++++LRK+L + +++KR GY + Sbjct: 187 D-FIDDNTLSVNVTRLRKRLEEVGITNAIETKRGQGYML 224 >gi|146294933|ref|YP_001185357.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|145566623|gb|ABP77558.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] Length = 231 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 8/151 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TG 129 P++ ++ S Q ++ D+G DD + KP H +E++AR+ A+ RR S +A G Sbjct: 74 PILILTARDSWQDKVEGLDAGADDYLTKPFHPQELVARLKALIRR---SAGKASPLVYNG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P + + + E+ L E ++ E+LM ++G+ +KT + IY D ++ NV Sbjct: 131 PFSLNTSSLEIRKGDELINLSGSEYKLFEFLMLHQGEVKSKTVLTEHIYDQ-DFDLDSNV 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E I +LRKKL ++ +++ R GY + Sbjct: 190 IEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220 >gi|114331551|ref|YP_747773.1| two component transcriptional regulator, winged helix family protein [Nitrosomonas eutropha C91] gi|114308565|gb|ABI59808.1| two component transcriptional regulator, winged helix family [Nitrosomonas eutropha C91] Length = 223 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 4/151 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGP 130 ++P++ ++ S++ T+ D G DD + KP E+ AR+ A+ RR V++ Sbjct: 72 RLPVLVLTARGSMEDTIAGLDVGADDYMVKPFRLPELAARIRALIRRAHSVASTELRHDQ 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + G+ L RE ILE L+ K V+K ++ ++ G +D+ + N + Sbjct: 132 LILNTGSHTATLHGQPLFLTMREWTILEILLMASPKVVSKDKLLQSLAG-WDKNITPNAI 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E H+S+LR K+ LG + + R +GY ID Sbjct: 191 EVHVSRLRAKI--ALGGIGIRTVRGIGYRID 219 >gi|329115641|ref|ZP_08244363.1| Transcriptional regulatory protein CusR [Acetobacter pomorum DM001] gi|326695069|gb|EGE46788.1| Transcriptional regulatory protein CusR [Acetobacter pomorum DM001] Length = 225 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 25/222 (11%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + L + G++ +DG S G + L +S + DV ++ L G E + L + Sbjct: 18 KGLAEAGHLVEQAEDGKS--GLS-------LAASEKFDVIILDRMLPGGVEGLHILQTLR 68 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 ++ P++ +S + + +G DD V KP E+ AR+ A+ RR NR E Sbjct: 69 NQNNLTPVLLLSALADVDEKVAGLKAGGDDYVTKPFSFSELQARLEALVRR-----NRNE 123 Query: 128 TGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 P + G R+ G+ L RE R+LE+LM + G+ V +T + ++ Sbjct: 124 AQPQTRLTIGDLEIDLLSRNVRRAGQKIELQPREFRLLEFLMRHAGQVVTRTMLLEGVWD 183 Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + NV++ HIS+LR+K+ V + R GY + Sbjct: 184 YHFDP--QTNVIDVHISRLRQKIDRPFHHPLVHTIRNAGYML 223 >gi|229138085|ref|ZP_04266683.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|228645430|gb|EEL01664.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 218 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 58 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R EV GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 118 KQEQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199 >gi|205372140|ref|ZP_03224955.1| DNA-binding response regulator [Bacillus coahuilensis m4-4] Length = 267 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 20/172 (11%) Query: 41 SAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 S R D+ I+ L G GE +L +I+ S VP+I IS Q+ + +G DD + Sbjct: 83 SERWDMVLIDLMLPGLSGEDIL---KIVTKESDVPIIIISAKLETQSKIAALRAGADDYI 139 Query: 100 NKPIHHREILARVAAIYRRLK----VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154 KP E+ AR+ + RR + VS N I + D + V G V L RE Sbjct: 140 TKPFDIEEVSARIDSCLRRYRDIPSVSITNLMSNKDIVLDPDAKIVTVNGNVLKLTAREY 199 Query: 155 RILEYLMANRGKRVAKTQIFSAI-----YGLFDEAVEENVVESHISKLRKKL 201 IL LM++ K K +F ++ YG ++N + H+S +R KL Sbjct: 200 EILLLLMSSPNKVFTKANLFESVWNEPFYG------DDNTINVHLSNIRNKL 245 >gi|209544301|ref|YP_002276530.1| winged helix family two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209531978|gb|ACI51915.1| two component transcriptional regulator, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 226 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 8/189 (4%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGV 95 +L S D+ ++ L G G L L IRA + P++ +S + + +G Sbjct: 38 FLAVSENFDLIILDRMLPG-GIDGLRLLETIRAQNNSTPVLLLSALADVDDRVQGLKAGG 96 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRR 152 DD V KP E+LARV A+ RR + N R + + R G+ L R Sbjct: 97 DDYVTKPFAFSELLARVEALSRRGRSDNAPLTRLNVADLEIDLLSRSVRRGGQRIDLQPR 156 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 E R+LEYLM + G+ V +T + ++ FD + NV++ H+S+LR+K+ + Sbjct: 157 EFRLLEYLMRHAGQVVTRTMLLEGVWDYHFDP--QTNVIDVHVSRLRQKVDKPFDTPLIH 214 Query: 212 SKRFLGYSI 220 + R GY + Sbjct: 215 TIRNAGYML 223 >gi|153815072|ref|ZP_01967740.1| hypothetical protein RUMTOR_01289 [Ruminococcus torques ATCC 27756] gi|145847640|gb|EDK24558.1| hypothetical protein RUMTOR_01289 [Ruminococcus torques ATCC 27756] Length = 211 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 79/145 (54%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 ++ R IR S+VP+I ++ + L F+ GVD+ ++KP + ++ARV AI RR Sbjct: 51 QVCREIRETSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRRTLG 110 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + E G I++ ++ ++ L +E +L Y + N+G +++ +I + ++ Sbjct: 111 NTAGDVIEAGDIKIDKAAHIVKINDKMIDLSYKEFELLSYFVENQGIALSREKILNNVWN 170 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR KL ++ Sbjct: 171 -YDYFGDARTIDTHVKKLRSKLGDR 194 >gi|91786148|ref|YP_547100.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91695373|gb|ABE42202.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 226 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 86/164 (52%), Gaps = 4/164 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+L + +RA +P++ +S + + + G DD ++KP RE+LARV ++ RR + Sbjct: 63 LDLCKELRAAGSMPVLILSAHGEEIDRVLGLELGADDYLSKPFSPRELLARVRSLLRRAR 122 Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + GP + + G+ + G L RRE +L L+ +RG+ ++ ++ A++ Sbjct: 123 MPPAAPVPANGPFEIDAAGQRMRLHGRPLNLTRREFGLLADLLHHRGRIRSRDELLGAVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 G D + V++HI LR KL+ D + + R +GY ++ Sbjct: 183 G-ADSDSTDRTVDTHIKTLRAKLQEAAPERDYIVTHRGMGYCLE 225 >gi|332296825|ref|YP_004438747.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] gi|332179928|gb|AEE15616.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] Length = 238 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 16/166 (9%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 RA VP+I +S L + G DD V KP E++AR+ A+ RR K + Sbjct: 69 RAGGSVPVIFVSAKSELTDKVSGLRLGADDYVTKPYDFPELIARIEALLRRTKTQTETED 128 Query: 128 T--------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + GP R+ G+ PL E ++L YL+ +RG+ V + Sbjct: 129 SPAELDYTDENDYVFGPFRLVFKKVQLLKDGKPVPLSLMECKLLMYLVVHRGELVKTDTL 188 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 ++G ++ A + +HIS LRKKL+ ++ +++ R +GY Sbjct: 189 MEYVWG-YETAAASGTLYTHISWLRKKLKTPQVPGGYIETVRNIGY 233 >gi|326799960|ref|YP_004317779.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326550724|gb|ADZ79109.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 225 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 4/168 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G ++LE ++ ++ +I IS SL L + G DD + KP H E+ AR+ A Sbjct: 57 GSGLQLLE--QLKQSEKSENVIIISAKDSLDDKLKGLELGADDYLTKPFHIAELNARIKA 114 Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR K+ ET + + + R V GE L R+E IL Y + N + V K+ + Sbjct: 115 VLRRKKLDGKHTIETRNVVLDLNERQLLVNGEAVALNRKEFDILNYFLLNTNRLVTKSAL 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D+A + + I LRKKL+ ++S +GY + Sbjct: 175 AEHVWGDNIDQADNLDFIYYQIKNLRKKLQQANAAIEIESVYGVGYKM 222 >gi|294787493|ref|ZP_06752746.1| DNA-binding response regulator PhoP [Parascardovia denticolens F0305] gi|315226931|ref|ZP_07868719.1| DNA-binding response regulator [Parascardovia denticolens DSM 10105] gi|294484849|gb|EFG32484.1| DNA-binding response regulator PhoP [Parascardovia denticolens F0305] gi|315121063|gb|EFT84195.1| DNA-binding response regulator [Parascardovia denticolens DSM 10105] Length = 245 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 20/172 (11%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI + + P++ ++ Q + G DD V KP E++AR+ AI RR + Sbjct: 74 RIRQQGIEAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TQE 130 Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E PI + D D G++ L E ++L YLM N G+ ++K QI ++ Sbjct: 131 QVEDDPIIRVADLEINEDSHDVTRHGQLVELSPTEYKLLRYLMDNEGRVLSKAQILDHVW 190 Query: 179 GLFDEAVEENVVESHISKLRKKL-----RNKLGFDP-----VDSKRFLGYSI 220 +D + +VES+IS LRKK+ R++ G + + +KR +GY I Sbjct: 191 Q-YDWGGDAAIVESYISYLRKKIDGITYRDEDGTEHKVTPIIQTKRGIGYII 241 >gi|226354970|ref|YP_002784710.1| response regulator CheY [Deinococcus deserti VCD115] gi|226316960|gb|ACO44956.1| putative response regulator, cheY [Deinococcus deserti VCD115] Length = 234 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 11/165 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S P+I ++ +Q ++ DSG DD + KP E+LARV A RR+ Sbjct: 73 LEVARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRV- 131 Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N A TG +RV DGR+ G L +E +LE L N GK ++ +I Sbjct: 132 ---NPAVTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEE 188 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + NVV+ +I LR+KL + + R +GY + Sbjct: 189 KVWPEYTGG--SNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 231 >gi|254490732|ref|ZP_05103915.1| response regulator receiver domain protein [Methylophaga thiooxidans DMS010] gi|224463904|gb|EEF80170.1| response regulator receiver domain protein [Methylophaga thiooxydans DMS010] Length = 219 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/219 (28%), Positives = 104/219 (47%), Gaps = 31/219 (14%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRII 67 AL K G+ +DG+ E +E D+ ++ L G+ G +VL+ R Sbjct: 16 ALNKSGFATDLSEDGIDGEAMGDIE---------PYDLIVLDLGLPGQSGLEVLKNWR-- 64 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 + + P+I ++ + + + F +G DD + KP E+L R+ A+ RR + Sbjct: 65 QRENATPVIILTARDAWEDKVLGFKAGADDYLAKPFQTEELLVRINAVLRR------SSG 118 Query: 128 TGPIRVFSDG--RDPEVQ------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 P + SDG D Q GE L E ++L Y M +RGK ++KT + +Y Sbjct: 119 LSPGTLNSDGLILDESKQSVTLKSGENLALTGTEFKLLRYFMLHRGKLLSKTTLTEHVYQ 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L D + NV+E ++++LR+ KLG D + ++R GY Sbjct: 179 L-DSDKDSNVMEVYVNRLRQ----KLGPDLIHTRRGQGY 212 >gi|86739186|ref|YP_479586.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86566048|gb|ABD09857.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 226 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 8/166 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRTLRTRSTVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRSE 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V + E GP+R+ + V G LP +E +LE + N G+ + + Q+ + Sbjct: 122 NEEVGDATLEAGPVRMDVERHVVTVDGTTVTLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221 +G D + ++ H+ +LR K+ ++ G +P + + R LGY + Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRTKIEHEPG-NPRHLVTVRGLGYKFE 225 >gi|300782393|ref|YP_003762684.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299791907|gb|ADJ42282.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 229 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 104/224 (46%), Gaps = 28/224 (12%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ A ++ G EE+ ++ A D+ ++ L G ++ + +R Sbjct: 21 LRKEGFTA-------AVAGTGQAALEEFDRNGA--DIVLLDLMLPGMSGT--DVCKQLRQ 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-- 127 S VP+I ++ S + + G DD V KP RE++ARV A+ RR + E Sbjct: 70 RSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGEPGSEGELA 129 Query: 128 -----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 GP+R+ + V G LP +E +LEYL+ N G+ + + Q+ ++G D Sbjct: 130 PLVLSAGPVRMDVERHVVTVDGADVSLPLKEFDLLEYLLRNVGRVLTRGQLIDRVWG-AD 188 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 + ++ H+ K+LR+K+ DP + R LGY + Sbjct: 189 YVGDTKTLDVHV----KRLRSKIEPDPGSPRHLVTVRGLGYKFE 228 >gi|319764284|ref|YP_004128221.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330826433|ref|YP_004389736.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|317118845|gb|ADV01334.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329311805|gb|AEB86220.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 222 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L + R +RA + P++ + + ++ D+G DD V KP E+LAR+ A+ RR Sbjct: 64 LAVLRSLRARKDRTPVLIATARDGVAQRVEGLDAGADDYVLKPYDAGELLARIRALLRR- 122 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ RAE + + R+ VQG L RE +LE L+A G +++ QI Sbjct: 123 --ASGRAEPVYEHQGVTLNPGTREATVQGRPVVLSAREWAVLEPLIARPGMVLSRQQIED 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG DE V N VE ++ LRK KLG V + R LGY + Sbjct: 181 KLYGWGDE-VSSNAVEVYVHGLRK----KLGAHIVLNVRGLGYMV 220 >gi|295106656|emb|CBL04199.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 229 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 7/170 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G ++L + R A +P++ ++ + T+ D+G DD + KP E+++RV A+ Sbjct: 58 GLEILHMLREDPATKHLPVMMLTAKGTEFDTVSGLDAGADDYLAKPFGMMELVSRVNALM 117 Query: 117 RR----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR +++ GPI + D V GE L +E +L LM N G +++ Q Sbjct: 118 RRAAAPAVAADDEFSCGPIALTVSSHDVSVDGENVALTLKEFDLLRTLMQNEGHVLSRRQ 177 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDP-VDSKRFLGYSI 220 + ++G+ E V+ HI LR+KL + G D + + R +GY + Sbjct: 178 LLEDVWGM-TYVGETRTVDVHIQTLRQKLAAAVEGADAYIQTVRGVGYCV 226 >gi|229012775|ref|ZP_04169944.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228748456|gb|EEL98312.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 14/163 (8%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 119 LKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + VS N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D ++ V++HI KKLRNKLG D R +G I Sbjct: 184 WG-YDYYGDDRTVDTHI----KKLRNKLG----DKARHIGTVI 217 >gi|229015017|ref|ZP_04172094.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|229021448|ref|ZP_04178059.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229024498|ref|ZP_04180945.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228736786|gb|EEL87334.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228739853|gb|EEL90239.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|228746284|gb|EEL96210.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 226 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 5/165 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E +++R + P++ +S S + F G DD + KP +E++ARV A RR K Sbjct: 61 FEFCKVVREQIKCPILFLSAKHSEIDKVKGFTLGGDDYITKPFQVKELIARVEAHLRREK 120 Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N+ G + + D + G + +E +ILE L N G+ +K QI+ Sbjct: 121 RERVNLQNQRFLGNLTINYSQHDVFIDGVKIDVTSKEFKILELLTVNLGQIFSKEQIYEK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+GL D + N + HI+ LR KL + + + +GY ++ Sbjct: 181 IWGL-DAVGDLNTIIVHINNLRAKLSLGMSTYHIKTVWGVGYKLE 224 >gi|221200480|ref|ZP_03573522.1| DNA-binding response regulator [Burkholderia multivorans CGD2M] gi|221206160|ref|ZP_03579174.1| DNA-binding response regulator [Burkholderia multivorans CGD2] gi|221174172|gb|EEE06605.1| DNA-binding response regulator [Burkholderia multivorans CGD2] gi|221179821|gb|EEE12226.1| DNA-binding response regulator [Burkholderia multivorans CGD2M] Length = 220 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + R +P I I+ ++ + DSG DD + KP E+LAR+ A+ RR Sbjct: 63 LASLRRRDETLPTIIITARDGVRDRIAGLDSGADDYLVKPFELEELLARIRAVNRR---H 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 RA+T GP+R+ + + PL +E +L LM G +++ Q +Y Sbjct: 120 AGRAQTTLAIGPLRLDPVKHRVWLHDDEVPLSPKEFVLLHELMREPGAVISREQFEERLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E +E N V+ HI LRK KLG D + + R +GY I Sbjct: 180 S-WGEEIESNAVQVHIHNLRK----KLGHDMIRTVRGVGYRI 216 >gi|302386537|ref|YP_003822359.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302197165|gb|ADL04736.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 224 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 90/183 (49%), Gaps = 5/183 (2%) Query: 41 SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 S D+ ++ L G+ G V++ R AH Q P++ ++ + + D G DD + Sbjct: 42 SGEYDIIILDVMLPGENGFHVVQKLR--EAHIQTPVLMLTARDDIHDKVTGLDKGADDYM 99 Query: 100 NKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 KP E+LAR+ A+ RR +V + G + D + L +E +L+ Sbjct: 100 TKPFVPEELLARIRALSRRQGEVIVEEMKYGDFILNLSANDLCCGSKSIHLGYKEFEVLK 159 Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 LM N GK ++K + S ++G D E+N VE++IS LRKKL+ + + R +GY Sbjct: 160 ILMNNSGKIISKEILISKVWG-SDSDAEDNNVEAYISFLRKKLKFIGSKVEIGTVRKVGY 218 Query: 219 SID 221 ++ Sbjct: 219 RLE 221 >gi|153813051|ref|ZP_01965719.1| hypothetical protein RUMOBE_03459 [Ruminococcus obeum ATCC 29174] gi|160894161|ref|ZP_02074939.1| hypothetical protein CLOL250_01715 [Clostridium sp. L2-50] gi|149830853|gb|EDM85943.1| hypothetical protein RUMOBE_03459 [Ruminococcus obeum ATCC 29174] gi|156864194|gb|EDO57625.1| hypothetical protein CLOL250_01715 [Clostridium sp. L2-50] Length = 236 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127 A Q+P++ I+ S F SG DD + KP++ E++ RV A+ RR ++ N ++ Sbjct: 83 AGYQIPVLMITAKGSFDDMRQGFFSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G D E LP+++ +L L A+ G+ K Q+ ++G EA + Sbjct: 143 IGSTEFDYDAMTVTTDKESLVLPKKQFLLLYKLAASPGRTFTKQQLMDEVWGYETEA-DP 201 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +E HI +LR++ ++ F+ V + R +GY + Sbjct: 202 HTIEVHIGRLRERFKDNPDFEIV-TMRGIGYKV 233 >gi|163941207|ref|YP_001646091.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863404|gb|ABY44463.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 225 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 14/163 (8%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 119 LKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + VS N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D ++ V++HI KKLRNKLG D R +G I Sbjct: 184 WG-YDYYGDDRTVDTHI----KKLRNKLG----DKARHIGTVI 217 >gi|300785437|ref|YP_003765728.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794951|gb|ADJ45326.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 229 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 7/146 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R S VP++ ++ + + L FD G DD V KP RE++ARV ++ RR Sbjct: 62 LEVVRALRRESDVPVLLVTARSTAEDKLAGFDLGADDYVTKPYDPRELMARVRSLLRRAG 121 Query: 121 VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S +R P+RV + D V E RILE LMA G+ +++ Q+ + Sbjct: 122 PSGSRP-VLPLRVGALLLDQIRHTVRVHDRPIDCTPAEFRILEALMAEPGRVLSRRQLLN 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +G D V E ++H+ LR+K+ Sbjct: 181 QAHGQ-DTFVTERTADAHLKNLRRKI 205 >gi|229062698|ref|ZP_04200007.1| Two-component response regulator vanRB [Bacillus cereus AH603] gi|229094149|ref|ZP_04225229.1| Two-component response regulator vanRB [Bacillus cereus Rock3-42] gi|228689252|gb|EEL43073.1| Two-component response regulator vanRB [Bacillus cereus Rock3-42] gi|228716668|gb|EEL68365.1| Two-component response regulator vanRB [Bacillus cereus AH603] Length = 198 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 73/142 (51%), Gaps = 5/142 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV A+ RR Sbjct: 58 ICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATK 117 Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + + + S V G L +E I+ L+ NRGK ++++ + + ++ Sbjct: 118 EAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKK 200 G ++ + V+++HI LRK Sbjct: 178 G-YEHYGDVRVIDTHIKNLRKN 198 >gi|210632475|ref|ZP_03297403.1| hypothetical protein COLSTE_01305 [Collinsella stercoris DSM 13279] gi|210159570|gb|EEA90541.1| hypothetical protein COLSTE_01305 [Collinsella stercoris DSM 13279] Length = 226 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 103/217 (47%), Gaps = 19/217 (8%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68 L K GY G D V+ GF+ L + +S DV ++ L G VL R +R Sbjct: 20 LRKSGY----GAD-VAQTGFDGL----GMATSGAYDVVLLDIMLPDMSGMDVL---RELR 67 Query: 69 AHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNR 125 A + VP+I ++ + + D+G DD ++KP H E+LAR+ A+ RR + N Sbjct: 68 AAGETVPVILLTARQGVGDRVAGLDAGADDYLSKPFHASELLARIRAVTRRPATYRAGNA 127 Query: 126 AETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E +R+ R +G E L RE ++LE LM G VA++ + + ++G Sbjct: 128 IEACGMRLDGVERTVACKGSSEALELTERESQLLEALMRRAGSAVARSALMARVWG-PTV 186 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +EN +E + LR KL +++ R +GY + Sbjct: 187 CADENRLEVLVHALRDKLEACGAPARIETVRGVGYRL 223 >gi|167567937|ref|ZP_02360853.1| DNA-binding response regulator [Burkholderia oklahomensis EO147] Length = 232 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 75/142 (52%), Gaps = 3/142 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L I + H+ VP++ +++ + ++G DD V KP +E +ARV A+YRR + Sbjct: 63 LAWIRKNHATVPVLILTNAVLESDVVTALEAGADDYVIKPPREQEFVARVKALYRRSREI 122 Query: 123 NNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R E GP ++ + + + E PL +E I+E L N G+ V + ++ S ++G Sbjct: 123 HTRPELMEIGPYKIQTIEKTVYLHREKIPLSPKEYEIIELLAQNLGQVVPRDKMVSLVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKL 201 + +++HI ++R+KL Sbjct: 183 RPPDEASFRTLDTHIYRIRQKL 204 >gi|331013564|gb|EGH93620.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 164 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 76/146 (52%), Gaps = 2/146 (1%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132 P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR + GP+ Sbjct: 13 PILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSSGFIQSTITAGPLL 72 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + + + + + L E RILEYLM + + V K ++ +Y DE + NV+E Sbjct: 73 LDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYPDDDER-DPNVIEV 131 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218 + +LR+KL + + F P+++ R +GY Sbjct: 132 LVGRLRRKLDSNVAFKPIETVRGMGY 157 >gi|328555084|gb|AEB25576.1| two-component response regulator SpaR [Bacillus amyloliquefaciens TA208] Length = 220 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +EL R IR P++ ++ ++ + +G DD + KP +E++ARV A Sbjct: 56 GTDGIELCRRIRPLVDSPILFLTAKSDEESIVKGLMTGADDYITKPFGVKELMARVNAHV 115 Query: 117 RRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR K R +G + F D ++ + PL + E +I+E+L ++ + ++ QI Sbjct: 116 RRESREKRQTKRLISGFMFDF-DNKEVWIDDRKLPLTKNEYKIVEFLAQHKNRTFSREQI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +YGL +A+ + E I +RKK + G DP+ + +GY Sbjct: 175 YEEVYGLDGDALYSTITE-FIRTIRKKCKEH-GADPIKTVWGVGY 217 >gi|257895927|ref|ZP_05675580.1| DNA binding response regulator CiaR [Enterococcus faecium Com12] gi|293377035|ref|ZP_06623245.1| transcriptional regulatory protein, C-terminal domain protein [Enterococcus faecium PC4.1] gi|257832492|gb|EEV58913.1| DNA binding response regulator CiaR [Enterococcus faecium Com12] gi|292644251|gb|EFF62351.1| transcriptional regulatory protein, C-terminal domain protein [Enterococcus faecium PC4.1] Length = 149 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 5/139 (3%) Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV 142 SL+ ++ F+ G DD + KP + E++ RV A+ +R + + D + EV Sbjct: 8 SLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSLGLFDENILKYKDISCDLKSNEV 67 Query: 143 --QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 + +V P+ +E +L Y + N+G + K QIF I+G FD VVE ++S LRK Sbjct: 68 LYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIWG-FDSDTTITVVEVYMSNLRKH 126 Query: 201 LRNKLGFDP-VDSKRFLGY 218 LR+ G D + + R +GY Sbjct: 127 LRST-GLDKEIKTLRNVGY 144 >gi|225387530|ref|ZP_03757294.1| hypothetical protein CLOSTASPAR_01283 [Clostridium asparagiforme DSM 15981] gi|225046366|gb|EEG56612.1| hypothetical protein CLOSTASPAR_01283 [Clostridium asparagiforme DSM 15981] Length = 233 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 4/151 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G L L IR S+VP++ +S S + G DD + KP E++ARV A++ Sbjct: 58 GTDGLSLCARIRGESRVPIMIVSAKDSPLDRVTGITLGSDDYMVKPFLPLELVARVKALF 117 Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR + S A + G + + R V GE F + E L YL+ G+ V+K + Sbjct: 118 RRAEYSQTEAPAAFKCGNLLLEQGARTITVGGEAFSVTPTEFDFLSYLLERAGQAVSKQE 177 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + I+ L D ++ V + + +LR+KL+ Sbjct: 178 LMREIWKLPDYELDTRVADDLVKRLRRKLKE 208 >gi|148259467|ref|YP_001233594.1| two component transcriptional regulator [Acidiphilium cryptum JF-5] gi|326402691|ref|YP_004282772.1| two-component response regulator [Acidiphilium multivorum AIU301] gi|146401148|gb|ABQ29675.1| two component transcriptional regulator, winged helix family [Acidiphilium cryptum JF-5] gi|325049552|dbj|BAJ79890.1| two-component response regulator [Acidiphilium multivorum AIU301] Length = 227 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 7/188 (3%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGV 95 ++ +S D ++ L G G L L +RA V P++ +S + + +G Sbjct: 38 FMAASENFDAIILDRMLPG-GIDGLRLLETLRAQDNVTPVLFLSALGEVDDRVKGLKAGG 96 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153 DD + KP E+LARV A+ RR K R G + + R + G+ L RE Sbjct: 97 DDYLTKPFAFAELLARVEAMARRGKGEGPATRLNVGDLEMDLLSRGVKRAGQKIDLQPRE 156 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 R+LEYLM + G+ V +T + ++ FD + NV++ HIS+LR+K+ + + Sbjct: 157 FRLLEYLMRHAGQVVTRTMLLEGVWDYHFDP--QTNVIDVHISRLRQKIDKPFDTPLLHT 214 Query: 213 KRFLGYSI 220 R GY + Sbjct: 215 VRNAGYML 222 >gi|327440624|dbj|BAK16989.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 222 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 19/226 (8%) Query: 2 FVLIDDRALVKD---GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 V+I+D +++ ++ +G D V+ FE +Q + E A + L+ Sbjct: 4 IVIIEDTETIREELKTFLITYGFDAVA-----PTNFENIIQETLNE---APDLILLDINL 55 Query: 59 KVLE---LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 + + + R IR S VP+I ++ + L + G DD V KP + + +LAR+ I Sbjct: 56 PIFDGYYICREIRKQSDVPIIVVTSRDNEMDELMSMNLGADDFVTKPYNTQILLARIETI 115 Query: 116 YRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR++ S+ R +++ +GE L + E +IL L N+GK V++ + Sbjct: 116 LRRVQGSSMRDTLVYNDLKLNLSNGSVTYKGEKAELTKNEIKILSCLYKNKGKIVSRDDL 175 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 ++ D V++N + ++++LRKKL LG + ++++R LGY Sbjct: 176 MDFMWNA-DVFVDDNNLSVNVTRLRKKLE-ALGMEKNIETRRGLGY 219 >gi|319891399|ref|YP_004148274.1| DNA-binding response regulator KdpE [Staphylococcus pseudintermedius HKU10-03] gi|317161095|gb|ADV04638.1| DNA-binding response regulator KdpE [Staphylococcus pseudintermedius HKU10-03] gi|323465422|gb|ADX77575.1| two-component response regulator KdpE [Staphylococcus pseudintermedius ED99] Length = 229 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 4/144 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LEL + IR +P+I IS QT ++ D+G +D + KP + E+ AR+ + R Sbjct: 62 LELIKRIRQTFDIPIIVISARLDEQTIVEALDNGANDYMTKPFNVDELRARIRVVQRLEN 121 Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + N + E GP+ V + ++ ++ L E +LE L + GK + I AI Sbjct: 122 MQNQKEIVFENGPLVVSYQAKTAQIDNQLLNLTPHEFALLELLCRHVGKVLTYDTILKAI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 YG +++ E + H++ LR KL Sbjct: 182 YGYVNQS-EMPSLRVHMTSLRNKL 204 >gi|229189480|ref|ZP_04316497.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228594071|gb|EEK51873.1| Two-component response regulator [Bacillus cereus ATCC 10876] Length = 218 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 58 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE+ L +E +L +L + G+ ++ Q+ ++ Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEANGELISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199 >gi|119774679|ref|YP_927419.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119767179|gb|ABL99749.1| two component transcriptional regulator, winged helix family [Shewanella amazonensis SB2B] Length = 224 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 3/160 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 + R+ A + P++ ++ + Q ++ ++G DD + KP E++AR+ A+ RR Sbjct: 63 ITRLRDAELKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGF 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R +G + + + + EV + E ILEYLM + + VAK ++ IYG Sbjct: 123 VKPRITSGSLELDLAAKQVTLDSEVLEITAFEYLILEYLMRHSHEVVAKQRLLDVIYG-- 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D+ + N +E +S+LRKKL +P+ + R GY + Sbjct: 181 DKEGDPNTIEVMVSRLRKKLTRDGMDNPIVTIRGQGYKFN 220 >gi|332185053|ref|ZP_08386802.1| phosphate regulon transcriptional regulatory protein PhoB [Sphingomonas sp. S17] gi|332014777|gb|EGI56833.1| phosphate regulon transcriptional regulatory protein PhoB [Sphingomonas sp. S17] Length = 230 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 11/157 (7%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 + VP+I ++ + + ++G DD V KP RE++ARV A+ RR++ A G Sbjct: 76 ANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRVRP----ALAGE 131 Query: 131 IRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 V++D G GEV L E R+L++ + + G ++ ++ A++G D Sbjct: 132 ALVYADIEMDTVGHKVRRAGEVVSLGPTEFRLLKHFLEHPGWVFSRERLLDAVWG-HDSD 190 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ HI +LRK + D + + R GYS+D Sbjct: 191 IESRTVDVHIRRLRKAINIGDRPDIIRTVRSAGYSLD 227 >gi|329946264|ref|ZP_08293858.1| sensory transduction protein RegX3 [Actinomyces sp. oral taxon 170 str. F0386] gi|328527556|gb|EGF54551.1| sensory transduction protein RegX3 [Actinomyces sp. oral taxon 170 str. F0386] Length = 254 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 86/175 (49%), Gaps = 16/175 (9%) Query: 61 LELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L LPR+ IR S VP+I +S + + + G DD V KP +RE+LAR+ Sbjct: 77 LMLPRLDGTEVCTRIRRSSSVPVIMLSAKDTELDKIVGLEIGADDYVTKPYSYRELLARL 136 Query: 113 AAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR +V + E G +R+ + + V GE +P RE +LE + + G+ + Sbjct: 137 KAVLRRSRVVPDEPEQVLAAGRVRMDVERHEVLVDGEAVAMPLREFELLELFLRHPGRVL 196 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGYSID 221 + QI ++G D + ++ H+ +LR ++ PV + R LGY +D Sbjct: 197 TRGQIIERLWG-PDYEGDTKTLDVHVKRLRGRIEAD-ASKPVLITTVRGLGYRLD 249 >gi|291537655|emb|CBL10767.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] gi|291537790|emb|CBL10901.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 223 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 5/167 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +L R +A + VP+I ++ S + D G DD + KP E+++RV A+ Sbjct: 60 GLDILTRIRADKATADVPVIMVTAKTSELDKVKGLDLGADDYITKPFGVMELISRVKALL 119 Query: 117 RRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR N ++ I + D V G++ L +E +L+YLM N+G +++ +I Sbjct: 120 RRTSRMNEDSQLIHEDILMDMDKHAVTVAGQLCELTFKEFELLKYLMLNQGIVLSRDKIM 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ E V+ HI LR+KL + + R +GY I+ Sbjct: 180 DQVWG-FEYEGESRTVDMHIKTLRQKL--GAAGSCIKTVRNVGYMIE 223 >gi|289677045|ref|ZP_06497935.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae FF5] Length = 157 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 75/146 (51%), Gaps = 2/146 (1%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132 P++ ++ + Q ++ +G DD V KP E+ AR+ A+ RR + GP+ Sbjct: 6 PILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSSGFIQSTITAGPLL 65 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + + + + + L E RILEYLM + + V K ++ +Y DE + NV+E Sbjct: 66 LDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLYPDDDER-DPNVIEV 124 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218 + +LR+KL + F P+++ R +GY Sbjct: 125 LVGRLRRKLDGSVAFKPIETVRGMGY 150 >gi|156935481|ref|YP_001439397.1| DNA-binding response regulator CreB [Cronobacter sakazakii ATCC BAA-894] gi|156533735|gb|ABU78561.1| hypothetical protein ESA_03340 [Cronobacter sakazakii ATCC BAA-894] Length = 230 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 10/209 (4%) Query: 24 VSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGE-KVLELPR-IIRAHSQVPLIGIS 79 + LEGF FE L + +AR+ + + +G + EL R ++ AH +P++ ++ Sbjct: 23 MQLEGFTVRTFERGLPALDAARQTLPDLVVLDVGLPDISGFELCRQLLAAHPALPVLFLT 82 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFS 135 L + G DD V KP RE+ ARV I RRL+ A+T G + Sbjct: 83 ARSEEVDKLIGLEIGADDYVAKPFSPREVCARVRTILRRLQKQQRGAQTVVRVGRFELND 142 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 + G+ L R E +L+ L+ G+ ++ Q+ ++G +++ + V++HI Sbjct: 143 EAAHIAWCGQPLSLTRYEYLLLKTLLLAPGRVYSRQQLMDIVWGDANDSFDRT-VDTHIK 201 Query: 196 KLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 LR KLR PV++ R LGYS+ N Sbjct: 202 TLRAKLRAVNPDVSPVNTHRGLGYSLAVN 230 >gi|146338745|ref|YP_001203793.1| two-component regulatory system response regulator [Bradyrhizobium sp. ORS278] gi|146191551|emb|CAL75556.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [Bradyrhizobium sp. ORS278] Length = 235 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 10/168 (5%) Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +RA S Q+P+I ++ + +G DD + KP E+LARV + R Sbjct: 62 IELCRRLRARSETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121 Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R S R T G I + + R G L E R+LE+ + + G+ ++ Q+ Sbjct: 122 R--ASPERLATVLSYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 180 LDSVWG-RDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226 >gi|18309101|ref|NP_561035.1| two-component response regulator [Clostridium perfringens str. 13] gi|18143776|dbj|BAB79825.1| two-component response regulator [Clostridium perfringens str. 13] Length = 226 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 7/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR SQVP+I ++ S L + G DD V KP + + +LAR+A+I +R S Sbjct: 65 ICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKR-TYS 123 Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ET ++ + + EV L + E +IL L+ N+GK V++ I A+ Sbjct: 124 GIEGETEIFNCRGLKYNMSTSEVSFKDEVEELTKNESKILNILIRNKGKIVSRDNIIKAL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +E +++N + ++++LR+K+ + +KR GY Sbjct: 184 WQ-SNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGY 223 >gi|209364452|dbj|BAG74710.1| response regulator-like protein [Streptomyces lavendulae] Length = 257 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 10/160 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA ++P+I ++ S + +G DD + KP RE++AR+ A+ RR + Sbjct: 100 EVCRGIRAAHEIPVIAVTARGSELDRVLGLQAGADDYLVKPYGFRELMARMEAVMRRARP 159 Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S A T GP+R+ + R+ + GE R+E +L L ++ + + + ++ Sbjct: 160 SRPAAATITCGPLRIDAGTREVTLHGEPVETTRKEFDMLYLLASHPDTVIPRKMLMQQVW 219 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G ++ V++H+S LRNK+G + + + R +G+ Sbjct: 220 G---DSWSRRTVDTHVS----TLRNKIGANWIITIRGVGF 252 >gi|166365093|ref|YP_001657366.1| OmpR family two-component response regulator [Microcystis aeruginosa NIES-843] gi|166087466|dbj|BAG02174.1| two-component response regulator OmpR subfamily [Microcystis aeruginosa NIES-843] Length = 221 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 105/215 (48%), Gaps = 7/215 (3%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL + Y+ DG EG+N LE ++ + + L+ + + E + Sbjct: 10 ALSERQYVVDVARDGE--EGWNWLELGKYDLLVLDVTLPKLSGTLLCQRLRRAESHHPVS 67 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127 A++ VP++ ++ ++ +D D+G DD V KP E++AR+ A+ RR S+ Sbjct: 68 ANATVPVLLLTARDTVIDKIDGLDAGADDYVTKPFDLGELMARIRALIRRGSSTSSVLLS 127 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G +++ + G++ L +E +LE L+ + + ++++ I ++ L D EE Sbjct: 128 WGGLQLNPSTHEASYNGQLLSLTPKEFALLELLVTHGRRVLSRSGIIERVWSLDDSPAEE 187 Query: 188 NVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220 V SHI LR KL++ LG D +++ LGY + Sbjct: 188 TVT-SHIRGLRHKLKS-LGAPEDFIETVHGLGYRL 220 >gi|90426389|ref|YP_534759.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90108403|gb|ABD90440.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB18] Length = 234 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 10/168 (5%) Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +RA Q+P+I ++ + +G DD + KP E+LARV + R Sbjct: 62 IELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121 Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R S R T G I + D R G L E R+LE+ + + G+ ++ Q+ Sbjct: 122 R--ASPERLATVLAYGDIELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 180 LDSVWG-RDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226 >gi|329767893|ref|ZP_08259407.1| hypothetical protein HMPREF0428_01104 [Gemella haemolysans M341] gi|328838681|gb|EGF88280.1| hypothetical protein HMPREF0428_01104 [Gemella haemolysans M341] Length = 225 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 87/175 (49%), Gaps = 2/175 (1%) Query: 48 AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE 107 AI ++ + + V + ++ P++ ++ ++ + DSG DD + KP +E Sbjct: 48 AILDVMMPQMDGVTVVKKLRENKKSTPVLLLTAKSEIEDKVYGLDSGADDYLTKPFVTKE 107 Query: 108 ILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 +LARV ++ RR ++N E G + + + + + L +E +++E LM N G Sbjct: 108 LLARVRSMTRRQATFTSNVLELGNVSLSKYTFELATEKDKVRLSNKEYQMMEMLMRNPGN 167 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + Q I+G +D E NVV +IS LRKKL+ + + R +GY+++ Sbjct: 168 VIQTEQFLERIWG-YDSESEINVVWVNISYLRKKLKALDANIHIKATRNVGYTLE 221 >gi|324325416|gb|ADY20676.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 63 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 122 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R EV GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 123 KQEQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204 >gi|255601445|ref|XP_002537677.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] gi|223515490|gb|EEF24706.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] Length = 228 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 26/202 (12%) Query: 16 IALFGDDGVSLEGFNSLEFEE-----WLQSSAREDVSAIEAFLIG--KGEKVLELPRIIR 68 +ALF G+S G+ + L +S + ++ L G G ++E R + Sbjct: 15 VALFLKKGLSESGYEVHHADNGRDGMLLAASTPYEAIIMDRMLPGGIDGLSIIEALR--K 72 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------L 119 + VP++ +S + + SG DD + KP E+LARV AI RR L Sbjct: 73 TGNNVPILILSAMAEVDDRIKGLQSGGDDYLIKPFSFGELLARVEAIIRRSRELTERTYL 132 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V N + +V+ DG+ L RE +LEYLM + K V +T + ++ Sbjct: 133 VVGNLHMDIMKHKVYRDGK-------AILLQPREFHLLEYLMRHANKVVTRTMLLENVWD 185 Query: 180 LFDEAVEENVVESHISKLRKKL 201 +D + NVV+ HISKLR+KL Sbjct: 186 -YDFDPQTNVVDVHISKLRQKL 206 >gi|114766017|ref|ZP_01445029.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Pelagibaca bermudensis HTCC2601] gi|114541735|gb|EAU44774.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseovarius sp. HTCC2601] Length = 222 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 9/166 (5%) Query: 57 GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G E+ R +R+ P+I ++ + + D+G DD + KP RE+ AR + Sbjct: 54 GRSGYEVLRSMRSRGDATPVIVLTARSEIDDRVVGLDAGADDYMVKPFDFRELSARCRVL 113 Query: 116 YRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR S+N GP R + V G + L RE ++LE ++ N G+ + K ++ Sbjct: 114 ARRRAGASSNVFAAGPFRFDRAAKQAHVDGVLLELRAREVQLLEIMLDNLGRMLTKEEVA 173 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218 +Y F+E N VE +++LR+ KLG P + + R LGY Sbjct: 174 DKLY-TFEETPSLNAVEQLVTRLRR----KLGGTPLVIKTARGLGY 214 >gi|295114725|emb|CBL35572.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SM4/1] Length = 237 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 19/194 (9%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRAHSQVPLIGISD 80 +S EG+ +E E LQ++ D S I+ +++ E E + IRA Q PL+ ++ Sbjct: 26 LSAEGYEVVEAENGLQAARLADES-IDMYILDVNMPEETGFEAAKKIRARFQAPLLFLTA 84 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN----NRAET----GPIR 132 Y ++ F G DD + KP + E++ RV A++RR + R ET G I Sbjct: 85 YSGEADKVNGFLIGADDYIVKPFSNMEMIMRVRAVFRRAEQGTPPAAAREETAEKKGMIP 144 Query: 133 VFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 + D E Q V L E RILE + +R K + I+ +++G ++AV + Sbjct: 145 IGDLLLDTESQSLIKNQAVISLTYTEYRILELMAKHRKKIYSLDNIYQSVWG--EDAVVD 202 Query: 188 NVVESHISKLRKKL 201 + HI +RKK+ Sbjct: 203 GAIMVHIKNIRKKM 216 >gi|86751792|ref|YP_488288.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86574820|gb|ABD09377.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] Length = 221 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 102/214 (47%), Gaps = 16/214 (7%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L + GYIA DG E W + + + I + + + + L R Sbjct: 18 RGLTEAGYIAECVADGE----------EAWFRGDTEDYAAIILDLGLPRLDGLTILKRWR 67 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRA 126 A + P++ ++ S +D D+G DD + KP E+LAR+ +I RR +++ Sbjct: 68 EAGRRTPVLILTARGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSAGHASSVV 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + ++G+ L E R+ YL+ +RG+ V++ ++ IYG D+A + Sbjct: 128 CIGDLTLDERQMQVSLRGQKVALSPLEYRLASYLVLHRGRVVSQFELNENIYGQ-DDAHD 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N +E + ++RK KLG + ++++R GY + Sbjct: 187 SNAIEVLVGRVRK----KLGPELIETRRGFGYIV 216 >gi|42780487|ref|NP_977734.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|206977570|ref|ZP_03238464.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217958874|ref|YP_002337422.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222095033|ref|YP_002529093.1| response regulator [Bacillus cereus Q1] gi|42736406|gb|AAS40342.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|206744288|gb|EDZ55701.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217068126|gb|ACJ82376.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221239091|gb|ACM11801.1| response regulator [Bacillus cereus Q1] Length = 223 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 63 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 122 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R EV GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 123 KQEQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204 >gi|307729779|ref|YP_003907003.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307584314|gb|ADN57712.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 219 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 7/163 (4%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +EL R +R A VP++ ++ ++ + ++G DD + KP E++AR A+ RR Sbjct: 60 MELLRRLRDAGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELIARCRALLRRA 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + S + V + EV G L RE IL L+ N+G +++++ ++Y Sbjct: 120 QGRSVELIRYRDLSVNPAAQAVEVAGRRVSLTSREWAILLQLLTNQGIPQSRSRLEESLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G + E +E N +E H+S LRK KLG + + + R +GY ++ Sbjct: 180 G-WQEEIESNAIEVHVSNLRK----KLGANLIRTVRNIGYVVE 217 >gi|196233990|ref|ZP_03132826.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196221929|gb|EDY16463.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 230 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 104/212 (49%), Gaps = 19/212 (8%) Query: 12 KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71 ++GY+A DG +G L+ +A D + I+ ++ K + + + RI + + Sbjct: 28 QNGYLAEISSDGE--DGLQKLQ-------TAPFDAAVID-LMLPKMDGLSLIERIRKGKT 77 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETG 129 V ++ +S S++ + SG DD + KP E+LARV AI RR+ + R E+ Sbjct: 78 PVAIVVLSAKHSVEDKVRCLRSGADDYLQKPFAISELLARVEAIVRRVSREAEVERLESA 137 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 + + + +G L RE +LE L+ NRG+ + K Q+ ++ FD + N Sbjct: 138 GVEIDLLAHIAKREGRRIDLQPREFALLELLVRNRGRALTKMQLLERLWDYSFDP--QTN 195 Query: 189 VVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218 VV+ + +LR KL GFD + + R +GY Sbjct: 196 VVDVLVCRLRNKLDR--GFDTKLIHTLRGIGY 225 >gi|120611930|ref|YP_971608.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590394|gb|ABM33834.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] Length = 230 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 3/150 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 + P++ +S S + + D+G DD + KP +E+ AR+ A+ RR S + G + Sbjct: 80 RTPVLVLSARDSTEERIAGLDAGADDYLGKPYELKEVEARLRALARRTTGSGDLVTVGRL 139 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 ++ R V + LP RE +L LM G+ ++K+ + + EA+ +N +E Sbjct: 140 QLDRQARRCSVDAQALELPAREFELLWELMTPPGRVLSKSDLSQRLSD-GGEALGDNALE 198 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 S +S+LR+KL + + R LGY+++ Sbjct: 199 SFVSRLRRKLAGSGAV--IRTLRGLGYTLE 226 >gi|56421267|ref|YP_148585.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|261418254|ref|YP_003251936.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297529108|ref|YP_003670383.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|319767786|ref|YP_004133287.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|56381109|dbj|BAD77017.1| two-component response regulator (phosphate regulation) [Geobacillus kaustophilus HTA426] gi|261374711|gb|ACX77454.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297252360|gb|ADI25806.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|317112652|gb|ADU95144.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 235 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 75/139 (53%), Gaps = 10/139 (7%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET------GPIRVFSDGRDPEVQG 144 + G DD + KP RE++ARV AI RR ++ AE+ G + +F + + + G Sbjct: 93 LELGADDYMTKPFSPREVIARVKAILRRTEIVQPAAESSERLVVGELEIFPERYEATIGG 152 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 + L +E +L YL ++G+ + + Q+ SA++ ++ A + +V+ HIS LR+K+ Sbjct: 153 KPLELTPKEFELLLYLARHKGRVLTRDQLLSAVWN-YEFAGDTRIVDVHISHLREKIETD 211 Query: 205 LGFDP--VDSKRFLGYSID 221 P + + R LGY ++ Sbjct: 212 TK-KPMYIKTVRGLGYKLE 229 >gi|209549806|ref|YP_002281723.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535562|gb|ACI55497.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 223 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 12/168 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE + +P++ R P+I ++ + ++ D G DD + KP E++AR+ A+ Sbjct: 57 GEGLSFIPQLRRTGKDTPIIVLTALNEPKERVEGLDLGSDDYLGKPFLVEELMARLRAVL 116 Query: 117 RR------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR LK++ R P+ + D + LPRRE +L L + K V + Sbjct: 117 RRPPNLAELKITAGRMVIDPLHLSVTVDDAPLD-----LPRRELLVLAALAKRKEKTVLR 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +A+Y ++E ++ N +++HIS+LR++L + + R +GY Sbjct: 172 ATLEAAVYN-YEEEIQSNALDAHISRLRRRLAEAGAEVSIHNIRGVGY 218 >gi|311747935|ref|ZP_07721720.1| DNA-binding response regulator [Algoriphagus sp. PR1] gi|126574903|gb|EAZ79261.1| DNA-binding response regulator [Algoriphagus sp. PR1] Length = 222 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 6/161 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +EL R R S P+I ++ ++ T+ SG +D + KP H E+L R+ R Sbjct: 60 IELTRQFRKQFSDTPIIFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIRVQLRAK 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + + GPI V R ++ E L ++E +LEYLM N+ K +T+I +++ Sbjct: 120 KGAKEKFTLGPI-VLDTERHIVLKNEQEIQLTQKEFALLEYLMRNKNKVCRRTRIIESVW 178 Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + FD V++ I+ LRKKL + D + + R +GY Sbjct: 179 DIHFD--YNTGVIDVFINSLRKKLDLQKDEDYIQTIRGVGY 217 >gi|117164773|emb|CAJ88322.1| putative response regulator [Streptomyces ambofaciens ATCC 23877] Length = 238 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 8/150 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R+IR S+VP++ + + ++G DD + KP ++ AR+AA+ RR + Sbjct: 70 LDVLRMIRGISRVPVLVATARDDETEIIRLLNAGADDYMVKPFSGGQLAARLAAVLRRSE 129 Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ RA + +RV R + G L RRE +L YL AN + +++ +I Sbjct: 130 PADVRAARRSVLQVADLRVDPTARTAHLAGRELSLTRREFDLLAYLAANADQVISRQRIL 189 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK 204 + ++ +E+ V+ H+S LR+KL K Sbjct: 190 TEVWQ--QPYLEDQTVDVHLSALRRKLGEK 217 >gi|293607635|ref|ZP_06689969.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] gi|292814068|gb|EFF73215.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] Length = 237 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 5/153 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGP 130 VP++ ++ SL+ L F G DD + KP E+ AR+ A+ +R + + A E GP Sbjct: 84 VPVLMLTARDSLEDKLAGFSHGADDYLTKPFALLEVEARLLALIQRSRGATVEAVREFGP 143 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 ++ + R V G+ L R+ I+E LM + G+ VA+ ++ S ++G +E + + Sbjct: 144 LKYDTRSRSVVVNGQPVHLTRKASLIMEALMRDPGRVVAREELESLLWG--NEPPSSDAL 201 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S + LR+ L + GFD +++ G+ + N Sbjct: 202 RSQVHLLRRALADA-GFDGIETLHGTGWRLTLN 233 >gi|110834862|ref|YP_693721.1| transcriptional regulatory protein [Alcanivorax borkumensis SK2] gi|110647973|emb|CAL17449.1| Transcriptional regulatory protein, putative [Alcanivorax borkumensis SK2] Length = 221 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 16/155 (10%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----- 126 Q+P+I IS +L+ + D G DD + KP E++AR+ A RR + + Sbjct: 72 QIPVIIISARDALEDRIGGLDCGADDYLVKPFSAVEMIARIRARLRRREPPGSETLHLGE 131 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E P+R R GE+ L RRE +L L+ +RG+ + + Q+ +YG ++E V Sbjct: 132 LEIDPVRFIVTRR-----GELVNLSRREMSLLMQLLRHRGRVLTRDQLEGGLYG-WNEDV 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E N +E HI LRK KLG D + + R +GYS+ Sbjct: 186 ESNALEVHIHHLRK----KLGSDLIRTVRGVGYSL 216 >gi|87198411|ref|YP_495668.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87134092|gb|ABD24834.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 229 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 5/143 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R+IR SQVP+I IS + D G DD VNKP E++AR+ RR Sbjct: 63 EVIRVIRESSQVPIIVISARHQEAEKIAALDEGADDYVNKPFEIGELMARIRVAVRRATS 122 Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A E GP+R+ R+ E+ GE L +E +L L N G+ V ++ +A + Sbjct: 123 QPANAAIFEGGPLRIDFAKREVELMGEPIKLSPKEYMLLHALARNVGQVVTHKRLLAAGW 182 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G + + + ++ LR+KL Sbjct: 183 G--NSTADLQYLRVYMGLLRQKL 203 >gi|319945731|ref|ZP_08019982.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319748091|gb|EFW00334.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 217 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP++ ++ + L F D + KP + R+ AI+++L+ Sbjct: 60 LEVLKTIRKTSSVPVLMLTAFHDEDYKLTAFGELADGYLEKPFSLSLLKVRIEAIFKKLQ 119 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S R T G RV + + G+ + +E ILEYL+ + GK ++QI A++ Sbjct: 120 PS--RVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWK 177 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL D + + R +GY ++ Sbjct: 178 ETEEIPFDRVIDVYIKELRKKLE----LDCIVTVRNVGYKLE 215 >gi|197303868|ref|ZP_03168903.1| hypothetical protein RUMLAC_02606 [Ruminococcus lactaris ATCC 29176] gi|197297051|gb|EDY31616.1| hypothetical protein RUMLAC_02606 [Ruminococcus lactaris ATCC 29176] Length = 223 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 5/150 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGP 130 +P+I ++ S + DSG DD V KP E+++R+ A+ RR + + ++ E Sbjct: 74 IPVIMVTAKGSEYDKVMGLDSGADDYVTKPFGMMELVSRIKAVLRRSRKTEEKSQIELSG 133 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I + + V G+ L +E +LE +M N+G + + Q+ + I+G +D E V Sbjct: 134 ICMNIKKHEVTVNGKEVALTLKEFELLEKMMLNKGIVLTRDQLLTEIWG-YDFDGETRTV 192 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + H+ LR+KL K D + + R +GY + Sbjct: 193 DVHVRTLRQKLGEK--GDLIQTVRGVGYRV 220 >gi|325689898|gb|EGD31902.1| DNA-binding response regulator [Streptococcus sanguinis SK115] Length = 224 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K + N G + Sbjct: 73 TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLSYGDV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V G+ L +E +L Y + N+ + + KTQIF ++G FD +VVE Sbjct: 133 TVNLSTNSTTKAGKDVELLGKEFDLLVYFLQNQNEILPKTQIFDRLWG-FDSDTTVSVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + R +GY Sbjct: 192 VYVSKIRKKLKGTTFAKNLHTLRSVGY 218 >gi|319442620|ref|ZP_07991776.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Corynebacterium variabile DSM 44702] Length = 225 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 106/227 (46%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD + DG +G+ ++ N E + S A D ++ + G G +V Sbjct: 3 ILVVDDEVRLADGVRRGLEAEGMVVDVVNDGETGLAMASDADYDAIVLDVMMPGMNGYRV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E R + P++ ++ ++ D+G DD + KP + ++AR+ A+ RR Sbjct: 63 CEALR--EDGNWTPVLFLTAKDGEWDEVEGLDTGGDDWLTKPFSYPVLVARLRAMVRR-- 118 Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S R E G +R+ R + PL RE +L++L+ + G+ V K ++ + + Sbjct: 119 GSRGRPEILSAGDLRLDPAARQAYRSDDEIPLTARELAVLDFLLRHAGEVVTKQEVLANV 178 Query: 178 Y-GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + G FD + N+VE +I LR K+ G + + R GY +D N Sbjct: 179 WGGSFDG--DTNIVEVYIGHLRAKVDRPFGRAAIGTVRGAGYRLDRN 223 >gi|295091242|emb|CBK77349.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 237 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 19/194 (9%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRAHSQVPLIGISD 80 +S EG+ +E E LQ++ D S I+ +++ E E + IRA Q PL+ ++ Sbjct: 26 LSAEGYEVVEAENGLQAARLADES-IDMYILDVNMPEETGFEAAKKIRARFQAPLLFLTA 84 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN----NRAET----GPIR 132 Y ++ F G DD + KP + E++ R+ A++RR + R ET G I Sbjct: 85 YSGEADKVNGFLIGADDYIVKPFSNMEMIMRIRAVFRRAEQGTPPAAAREETAEKKGMIP 144 Query: 133 VFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 + D E Q V L E RILE + +R K + I+ +++G ++AV + Sbjct: 145 IGDLLLDTESQSLIKDQAVISLTYTEYRILELMAKHRKKIYSLDNIYQSVWG--EDAVGD 202 Query: 188 NVVESHISKLRKKL 201 + HI +RKK+ Sbjct: 203 GAIMVHIKNIRKKM 216 >gi|224541807|ref|ZP_03682346.1| hypothetical protein CATMIT_00979 [Catenibacterium mitsuokai DSM 15897] gi|224525275|gb|EEF94380.1| hypothetical protein CATMIT_00979 [Catenibacterium mitsuokai DSM 15897] Length = 231 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 13/155 (8%) Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 ++R ++ P++ ++ F SG DD + KP + E+ RV A+ RR V + Sbjct: 66 LLREKTKAPILFLTAKGQDSDKTLGFSSGGDDYLTKPFSYNELNGRVKALLRRYHVYQGK 125 Query: 126 A---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +TG I V S R + GE L E ILEYL+ N+ + ++ +Q+F A Sbjct: 126 GTTQEKQITYKTGNIEVNSAKRTASIDGEKLNLTDLEYNILEYLLMNKQQVISPSQLFEA 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 I+ N + HI LR+K+ DP + Sbjct: 186 IWHEEYYYGANNTIMVHIRHLRQKIEK----DPTN 216 >gi|90579722|ref|ZP_01235531.1| transcriptional regulator [Vibrio angustum S14] gi|90439296|gb|EAS64478.1| transcriptional regulator [Vibrio angustum S14] Length = 223 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 12/205 (5%) Query: 28 GFNSLEF--------EEWLQSSAREDVSAIEAFLIGKG-EKVLELPRIIRAHSQVPLIGI 78 GFN+L F E L + D I L+ G + + L ++ + + +I + Sbjct: 19 GFNNLGFSTDEAENGNEGLTLALDNDYDIIILDLMLPGIDGMTILNKLRQTGIETRIIIL 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSD 136 S Q +D G DD V KP E+ ARV AI RR + + N E + + Sbjct: 79 SAKTQSQDRIDGLMQGADDYVTKPFSFDELHARVVAISRRCQAVSITNTIEIDGFLLDLN 138 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 R L E +I++YL +RG+ + + I I FD + +N +E HIS Sbjct: 139 KRTLFYGNNDLELTPNEFKIIDYLFTHRGQILTASMISDNITNNFD-YISKNTIEVHIST 197 Query: 197 LRKKLRNKLGFDPVDSKRFLGYSID 221 +RKK +N P+ +KR GY ++ Sbjct: 198 MRKKAKNIEAVLPIKNKRGFGYYVE 222 >gi|330994125|ref|ZP_08318053.1| Transcriptional regulatory protein CusR [Gluconacetobacter sp. SXCC-1] gi|329758592|gb|EGG75108.1| Transcriptional regulatory protein CusR [Gluconacetobacter sp. SXCC-1] Length = 226 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 6/188 (3%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 ++ S + D+ ++ L G + V L I ++ P++ +S + + +G D Sbjct: 38 FMAVSEKFDLIILDRMLPGGIDGVRLLETIRAQNNTTPVLLLSALADVDDRVQGLKAGGD 97 Query: 97 DVVNKPIHHREILARVAAIYRRLKVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153 D V KP E+LARV A+ RR + + E + + R G+ L RE Sbjct: 98 DYVTKPFAFSELLARVEALGRRGRTEAAPQTKLELADLEIDLLSRTVRRAGQKIDLQPRE 157 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 R+LEYL + G+ V +T + ++ FD + NV++ H+S+LR+K+ G + + Sbjct: 158 FRLLEYLTRHAGQVVTRTMLLEGVWDYHFDP--QTNVIDVHVSRLRQKVDKPFGTPLIHT 215 Query: 213 KRFLGYSI 220 R GY + Sbjct: 216 IRNAGYML 223 >gi|296134128|ref|YP_003641375.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032706|gb|ADG83474.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 237 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 9/154 (5%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 + P++ ++ +++ ++ D+G DD + KP E+LAR+ A+ RR + N +E I Sbjct: 72 KTPVLLLTARDAVEDRVEGLDAGADDYLVKPFATEELLARIRALARR-QSENFHSE--KI 128 Query: 132 RVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 RV S DP E L +E ++LE M N G+ + K QI ++GL D VE Sbjct: 129 RVGSLTLDPLHCEITCGDEKVRLTYKETQLLELFMRNSGQVITKEQILDRVWGL-DSEVE 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N VE +I LRKK+ + +++ R +GY + Sbjct: 188 LNNVEIYIHYLRKKIVPEKSKVRLETVRGVGYCL 221 >gi|291541536|emb|CBL14646.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] Length = 223 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 5/148 (3%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VLE R VP+I ++ S + D G DD + KP E+++RV AI Sbjct: 59 GLSVLEKMRRDAVTKNVPVILVTAKGSEMDKVKGLDMGADDYITKPFSVLELISRVRAIL 118 Query: 117 RRLKVSNNR--AETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR V + + + G I VF D + GE L +E +L+YL+ N+G + + I Sbjct: 119 RRCSVDDRQDVIKLGQI-VFDDSKHIVTSCGEECNLTFKEYELLKYLLKNKGMALTRENI 177 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G +D E V+ HI+ LR+KL Sbjct: 178 ILNVWG-YDFEGESRTVDMHITTLRQKL 204 >gi|220922718|ref|YP_002498020.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219947325|gb|ACL57717.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 221 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L RI A S VP++ ++ ++ + D G DD + KP E ARV A+ RR + + Sbjct: 63 LRRIRAAKSAVPVMILTARDAVTDRVRGLDLGADDYLLKPFAPAEFEARVRALIRRGQGL 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N G + + + E L RRE +L LMA G+ V K ++ ++G F Sbjct: 123 PNPVLRCGALSLDRATGTVTLGDEPVSLRRRELAVLTVLMARAGQVVPKERLSGEVFG-F 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DEAV N +E ++++LRKKL+ + + R LGY +D Sbjct: 182 DEAVAPNALELYVARLRKKLQPN--GPEIRTIRGLGYLLD 219 >gi|89092005|ref|ZP_01164960.1| Two component Transcriptional regulator, Winged helix family protein [Oceanospirillum sp. MED92] gi|89083740|gb|EAR62957.1| Two component Transcriptional regulator, Winged helix family protein [Oceanospirillum sp. MED92] Length = 219 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 9/162 (5%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ + +RA + P++ ++ +++ ++ D G DD + KP E+ AR+ A+ RRL Sbjct: 62 LEILKRLRAENISTPVLILTARHAVEERVNGLDLGADDYLTKPFEMDELEARLRAVQRRL 121 Query: 120 KVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + T G I++ S R +G RRE +L L+ N G+ + + +I + +Y Sbjct: 122 HGRSKEEITFGDIKIDSAARQVFFKGSPIEASRREFDLLVLLLNNTGRVMTRAKIEATLY 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + VE N +E HI LRK KLG + + + R +GY + Sbjct: 182 A---DDVESNALEVHIHNLRK----KLGKELISTVRGVGYYV 216 >gi|271965271|ref|YP_003339467.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508446|gb|ACZ86724.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 222 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/138 (32%), Positives = 73/138 (52%), Gaps = 7/138 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123 +R + VP+I +S Q ++ D+G DD V KP + E+LAR+ A+ RR V + Sbjct: 67 LRGWTAVPIIVLSGRAGNQDKVEALDAGADDYVTKPFNIEELLARMRAVTRRTAVQDAEP 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 R E G V D D + G V P E R+LE L+ N GK +++ Q+ + ++ Sbjct: 127 ARIEIGGHTV--DLADKTISGGVRLTP-TEWRMLELLLRNPGKLISQRQMLTEVWD-SKH 182 Query: 184 AVEENVVESHISKLRKKL 201 E N + ++++LR+KL Sbjct: 183 TTETNYLRQYMAQLRRKL 200 >gi|227551464|ref|ZP_03981513.1| response regulator [Enterococcus faecium TX1330] gi|227179408|gb|EEI60380.1| response regulator [Enterococcus faecium TX1330] Length = 147 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 5/139 (3%) Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV 142 SL+ ++ F+ G DD + KP + E++ RV A+ +R + + D + EV Sbjct: 6 SLEDKIEGFERGADDYLTKPFYREELIMRVKALLKRSLGLFDENILKYKDISCDLKSNEV 65 Query: 143 --QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 + +V P+ +E +L Y + N+G + K QIF I+G FD VVE ++S LRK Sbjct: 66 LYKEQVLPIQGKEFELLVYFLQNKGIILTKEQIFDRIWG-FDSDTTITVVEVYMSNLRKH 124 Query: 201 LRNKLGFDP-VDSKRFLGY 218 LR+ G D + + R +GY Sbjct: 125 LRST-GLDKEIKTLRNVGY 142 >gi|313681083|ref|YP_004058822.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313153798|gb|ADR37649.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 235 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 2/159 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R + H VP+I ++ +++ + G DD + KP H E+LAR+ RR + Sbjct: 74 EIARRAKQHGDVPIIVLTATDAVERKVQLLLGGADDYLTKPFHPAELLARIQVQLRRGEG 133 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R G + + + R G L +E +LE L + G+ ++ +I I+G Sbjct: 134 GEVR-RVGDLEIEVETRRVRAGGREVALSPKEFALLELLSSRPGRVFSRDEIARHIWGKP 192 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E E NVV+ H++ LR KLR + + + R +GY++ Sbjct: 193 LE-TESNVVDVHVANLRAKLREAGAYGYLRTVRGVGYAL 230 >gi|296876253|ref|ZP_06900306.1| response regulator [Streptococcus parasanguinis ATCC 15912] gi|296432758|gb|EFH18552.1| response regulator [Streptococcus parasanguinis ATCC 15912] Length = 217 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP++ ++ + L F D + KP + R+ AI+++L+ Sbjct: 60 LEVLKTIRKTSSVPVLMLTAFHDEDYKLTAFGELADGYLEKPFSLSLLKVRIEAIFKKLQ 119 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S R T G RV + + G+ + +E ILEYL+ + GK ++QI A++ Sbjct: 120 PS--RVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWK 177 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL D + + R +GY ++ Sbjct: 178 ETEEIPFDRVIDVYIKELRKKLE----LDCIVTVRNVGYKLE 215 >gi|260548960|ref|ZP_05823182.1| two-component system DNA-binding response regulator [Acinetobacter sp. RUH2624] gi|260408128|gb|EEX01599.1| two-component system DNA-binding response regulator [Acinetobacter sp. RUH2624] Length = 224 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 80/166 (48%), Gaps = 11/166 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR + P++ IS LQ +D + G DD + KP E+LAR+ A+ RR Sbjct: 61 MQVLKQIRQRAATPVLIISARDQLQNRVDGLNLGADDYLIKPYEFDELLARIHALLRRSG 120 Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V A E+G + + + +G+ L RE IL LM++ K +K + Sbjct: 121 VEAQLASQDQLLESGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLE 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y FD V N +E ++ LR KLG D + + R LGY + Sbjct: 181 DKLYD-FDSDVTSNTIEVYVHHLRA----KLGKDFIRTIRGLGYRL 221 >gi|168213386|ref|ZP_02639011.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170715170|gb|EDT27352.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 226 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 7/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR SQVP+I ++ S L + G DD V KP + + +LAR+A+I +R S Sbjct: 65 ICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKR-TYS 123 Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ET ++ + + EV L + E +IL L+ N+GK V++ I A+ Sbjct: 124 GIEGETEIFNCRGLKYNMSTSEVSFKDEVEELTKNESKILNILIRNKGKIVSRDNIIKAL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +E +++N + ++++LR+K+ + +KR GY Sbjct: 184 WQ-SNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGY 223 >gi|264680915|ref|YP_003280825.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|299530906|ref|ZP_07044320.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|262211431|gb|ACY35529.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|298721127|gb|EFI62070.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 225 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 4/150 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131 +P++ ++ S++ + D G DD + KP E+ ARV A+ RR + +++ + GP+ Sbjct: 74 LPVLILTAADSIEERVQGLDYGADDYMAKPFALSELEARVRALTRRGMGGASSTIKHGPL 133 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 GR + G++ L RE +LE L+ G+ V+K Q+ + + E V N +E Sbjct: 134 VYDQTGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLCE-WGEEVSNNAIE 192 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +I +LRKK+ G + + R LGY ++ Sbjct: 193 VYIHRLRKKIEK--GPIRIATVRGLGYCLE 220 >gi|168211855|ref|ZP_02637480.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170710190|gb|EDT22372.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] Length = 226 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 7/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR SQVP+I ++ S L + G DD V KP + + +LAR+A+I +R S Sbjct: 65 ICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKR-TYS 123 Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ET ++ + + EV L + E +IL L+ N+GK V++ I A+ Sbjct: 124 GIEGETEIFNCRGLKYNMSTSEVSFKDEVEELTKNESKILNILIRNKGKIVSRDNIIKAL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +E +++N + ++++LR+K+ + +KR GY Sbjct: 184 WQ-SNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGY 223 >gi|164687352|ref|ZP_02211380.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM 16795] gi|164603776|gb|EDQ97241.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM 16795] Length = 226 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 79/153 (51%), Gaps = 6/153 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----E 127 Q+P+I ++ + L+ + G DD + KP +E+LAR+ ++ RR K ++N + Sbjct: 75 QIPVIMLTAKNMEEDKLEGLEDGADDYITKPFSVKEVLARITSVLRRYKYTSNEKIEVLK 134 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 I+V + G+ L +E +IL+ L+ N+G + +T + I+G +D E Sbjct: 135 ADDIQVNVNKHIVTKNGQEIELTLKEFQILKLLIENKGNVLTRTFLLDKIWG-YDYYGET 193 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ HI LRKK+ + +++ R +GY I Sbjct: 194 RTLDVHIRHLRKKIGDN-DSKLIETVRGVGYKI 225 >gi|332754263|gb|EGJ84629.1| transcriptional regulatory protein qseB [Shigella flexneri 2747-71] Length = 219 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D L+ DG G S++ F + SA D ++ L G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDSR-- 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 61 DILREWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++N G + + R + GE L +E +LE LM N G+ + + I +Y Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|328951450|ref|YP_004368785.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328451774|gb|AEB12675.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 221 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 2/160 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + ++ ++ +++ + +G D V KP +E+LARV A R K Sbjct: 63 LEVAHRVAGQKDTSILMLTARGDVESRVQGLYAGASDYVTKPFSLKELLARVHARLRERK 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + R V G V PL RE +LE L+ NRG+ +K ++ +YG+ Sbjct: 123 RHEDVIRVGTLELDRVKRQCRVDGAVVPLTAREYALLELLLVNRGRIFSKEELEDRLYGM 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A N +E IS LR+KL + + + R +GY + Sbjct: 183 DLPA--SNTIEVFISNLRRKLAARGVQGLITTVRGMGYVV 220 >gi|319784369|ref|YP_004143845.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170257|gb|ADV13795.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 225 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 13/148 (8%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R++R ++VP+I ++ SL + + G DD + KP E+ AR+ A RR Sbjct: 60 LEVLRMLRTRGNRVPVIVLTANASLDGRVKGLNEGADDYLAKPFQIEELEARIRAQLRR- 118 Query: 120 KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +N+R T P+ D R + GE L RE +LE LM G+ V+K + Sbjct: 119 --ANDR--TAPVVACGDLVFDTNTRLFSLAGEALALTPREHAVLEQLMVKAGRTVSKAAL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 +AIY F+ + + +E ++ ++RKKL Sbjct: 175 SAAIYD-FETDADPSAIEIYVHRVRKKL 201 >gi|309790009|ref|ZP_07684584.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308227952|gb|EFO81605.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 227 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 12/167 (7%) Query: 64 PRIIRA----HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 P I RA + + L+ ++ L+ + DSG DD + KP E+LARV A+ RR Sbjct: 60 PTICRAIRAARTPMALLLLTARGQLEDRVKGLDSGADDYLVKPFAFEELLARVRALSRRF 119 Query: 120 KVSNNRAETGPIRV---FSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S + +T +RV D R + V L E +LEYLM N G +++ QI Sbjct: 120 TPSGS--DTSELRVGEIVLDLRSHTARRGNRVLDLTPTEWNLLEYLMRNVGLSLSRQQIL 177 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ ++ V+ +V+ +IS LR+KL DP+ + R +GY ++ Sbjct: 178 DYVWS-YERDVQIALVDVYISYLRRKLNAPGESDPIMTVRGVGYRLE 223 >gi|227505097|ref|ZP_03935146.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227198300|gb|EEI78348.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 232 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 24/203 (11%) Query: 10 LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+G+ + DG +LE F A V + L+ G ++ + +R Sbjct: 21 LRKEGFDVILASDGPTALEQF------------ANNTVDIVLLDLMLPGMSGTDVCKQLR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127 A S VP+I ++ S + + G DD V KP RE++AR+ A+ RR VS E Sbjct: 69 ATSSVPVIMVTSRDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHDVSAESQE 128 Query: 128 TG-PIRVFSDGR---DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G ++ GR D E V GE +P +E +LEYL+ N G+ + + Q+ I+ Sbjct: 129 EGLEEQILEGGRVRMDVERHIVMVDGEEVSMPLKEFDLLEYLLRNAGRVLTRGQLIDRIW 188 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G D + ++ H+ +LR K+ Sbjct: 189 G-ADYVGDTKTLDVHVKRLRSKI 210 >gi|255283042|ref|ZP_05347597.1| DNA-binding response regulator CiaR [Bryantella formatexigens DSM 14469] gi|255266344|gb|EET59549.1| DNA-binding response regulator CiaR [Bryantella formatexigens DSM 14469] Length = 226 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 4/159 (2%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E R +R S +P+I ++ + + + SG+DD + KPI + E+ + A+ RR + Sbjct: 61 EFVRTLREGSMNIPVIMLTAMNTFAHKKEGYASGIDDYMTKPIQYEELEWHIEALLRRAR 120 Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++N NR G + + D + +G PL +E +L ++ K Q+ ++G Sbjct: 121 IANDNRITVGGLVLDRDSMSAKYEGTDIPLTAKEFELLYKFLSYPDVVFTKQQLMDELWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +D + N +++++S+LR K + F+ V + R LGY Sbjct: 181 -YDTESDYNTIKTYVSRLRSKFSHCHEFELV-ALRGLGY 217 >gi|62179752|ref|YP_216169.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|73621399|sp|Q57QC3|PHOP_SALCH RecName: Full=Virulence transcriptional regulatory protein phoP gi|62127385|gb|AAX65088.1| response regulator in two-component regulatory system with PhoQ, transcribes genes expressed under low Mg+ concentration (OmpR family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|219523861|gb|ACL14893.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica] gi|322714222|gb|EFZ05793.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 224 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 5/218 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ ++ + D++ ++ L E L Sbjct: 5 LVVEDNALLRHHLKVQLQDSGHQVDATEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 62 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R+ +P++ ++ Q ++ SG DD V KP H E++AR+ A+ RR Sbjct: 63 LIRRWRSSDISLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ V EV L E I+E L+ N GK V+K + +Y Sbjct: 123 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E E + ++ + +LRKK++ + D + + R GY Sbjct: 182 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGY 219 >gi|120556645|ref|YP_960996.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120326494|gb|ABM20809.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 226 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 93/192 (48%), Gaps = 15/192 (7%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGV 95 + +S D+ ++ L G L + + +RA +Q P++ +S + ++ G Sbjct: 38 MMAASEEYDIMIVDRML--PGMDGLSIIKTVRATGNQTPVLILSALGDVDDRVEGLRGGG 95 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPL 149 DD + KP E+LAR+ ++ RR + AET + +D R + G+ + Sbjct: 96 DDYLTKPFSFTELLARIESLIRR---NRQAAETETVLKVADLEMDLLARTVKRAGQNIDV 152 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 RE R+LEYLM N G+ V +T + ++ FD + NV++ HIS+LR K+ + Sbjct: 153 QPREFRLLEYLMRNAGQVVTRTMLLEKVWDYHFDP--QTNVIDVHISRLRAKIDKEFDTP 210 Query: 209 PVDSKRFLGYSI 220 + + R GY + Sbjct: 211 LLQTVRGAGYML 222 >gi|323705815|ref|ZP_08117387.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534811|gb|EGB24590.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 224 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/205 (23%), Positives = 95/205 (46%), Gaps = 5/205 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++DD ++D + +G +++ F + E L + ++ + ++ G Sbjct: 4 LIYIVDDDKNIRDLMVKYVEKEGYTVKSFENAE--AVLDNFEKDKPDMLILDIMMPGMDG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R IR S VP+I +S + + G DD + KP RE++AR+ +++RR+K Sbjct: 62 YELCRQIRKKSDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRRVK 121 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N+ I + D R GE E ++++L N K + Q+ ++ Sbjct: 122 MPKRNDEIRIKDIVIVPDERKVIYNGEEIGFTSMEFELIQFLAQNANKAFTREQLLEKVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203 +D E V+ + ++RKKL++ Sbjct: 182 K-YDSFTETRAVDDMVKRIRKKLQS 205 >gi|194367131|ref|YP_002029741.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194349935|gb|ACF53058.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 231 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 P++ ++ ++ + D G DD + KP RE AR + RR + ++ + G Sbjct: 73 TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRARGQASEVVQIGGF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + + GE LP RE R+LE L+ G+ V K +I + ++G FD+ N +E Sbjct: 133 QFDNAAHRVSLDGEPIELPNREYRLLEILVGRLGQVVGKDEIGNGLFG-FDDEAGPNAIE 191 Query: 192 SHISKLRKKL 201 +I +LRKKL Sbjct: 192 LYIGRLRKKL 201 >gi|89893889|ref|YP_517376.1| hypothetical protein DSY1143 [Desulfitobacterium hafniense Y51] gi|89333337|dbj|BAE82932.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 3/161 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R IR S VP+I ++ S+ + DSG +D + KP E+LAR+ R Sbjct: 67 EVLRRIRRTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNTAP 126 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + + +D R ++G+ L +RE +L +L+ N+G +++ + ++G Sbjct: 127 LSSTEVLSASGLELDADRRTVTMRGKPVDLTKREFDLLHFLLKNKGIVLSRESLLENVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD A + N V+ +I LR K+ + + R +GY I Sbjct: 187 -FDFAGDTNAVDVYIRFLRGKIDEVFNLKFIHTVRGVGYVI 226 >gi|288957332|ref|YP_003447673.1| DNA-binding two-component response regulator [Azospirillum sp. B510] gi|288909640|dbj|BAI71129.1| DNA-binding two-component response regulator [Azospirillum sp. B510] Length = 260 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 3/160 (1%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L +RA + P++ ++ + + + G DD + KP E++AR+ A+ RR Sbjct: 60 LTLLSALRARADTTPVLVLTARDGVDDRVRGLNLGADDYLVKPFALEELVARIRALLRRP 119 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G + SD R V G L RRE LE L+ G+ V+KT + + +Y Sbjct: 120 GAALGLVLQQGNVAFDSDARLASVAGRPLDLSRRELDALELLLRRAGRVVSKTALENGLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G F E + N VE I +LRK+L+ V + R +GY Sbjct: 180 G-FGEEIGSNAVEVLIHRLRKRLQAAGATAGVQTLRGIGY 218 >gi|300024305|ref|YP_003756916.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299526126|gb|ADJ24595.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 221 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 83/151 (54%), Gaps = 8/151 (5%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETG 129 +P++ ++ + ++ D+G DD + KP E++ARV ++ RR V + A G Sbjct: 72 MMPVLILTARGAWPERVEGIDAGADDYLAKPFQLEELMARVRSLIRR-SVGHGSAILTAG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P+ + + + G P+ E R++ YLM ++G+ V T++ +YG D+A + N Sbjct: 131 PLALDTRQMRVVLDGAPVPVSPLEYRLIGYLMHHKGRVVPPTELIEHLYG-DDDARDANA 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E+ +++LR+ KLG + ++++R GY + Sbjct: 190 LEAVVTRLRR----KLGQETIETRRGFGYMV 216 >gi|192359567|ref|YP_001983303.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107] gi|190685732|gb|ACE83410.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107] Length = 220 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 2/160 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +R SQVP+I + L + G DD + KP RE++ARV A+ RR + Sbjct: 60 LSVCREVRKQSQVPIIMTTAKVEEIDRLLGLEVGADDYICKPFSPREVVARVKAVLRRSQ 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + A+ + + + QG+ L E RILE L A++ K V++ + Y Sbjct: 120 APSG-ADNSILHLDKEAMQVHHQGQSIELTAIEFRILETLFAHKHKVVSRDLLQKNAYT- 177 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V + ++SHI+KLRKKL+ + + S +GY + Sbjct: 178 DHRVVSDRTMDSHITKLRKKLQQIHPQEIIHSVYGVGYRL 217 >gi|182625941|ref|ZP_02953705.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|177908748|gb|EDT71255.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 226 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 7/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR SQVP+I ++ S L + G DD V KP + + +LAR+A+I +R S Sbjct: 65 ICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKR-TYS 123 Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ET ++ + + EV L + E +IL L+ N+GK V++ I A+ Sbjct: 124 GIEGETEIFNCRGLKYNMSTSEVSFKDEVEELTKNESKILNILIRNKGKIVSRDNIIKAL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +E +++N + ++++LR+K+ + +KR GY Sbjct: 184 WQ-SNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGY 223 >gi|319424525|gb|ADV52599.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 231 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 8/151 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TG 129 P++ ++ S Q ++ D+G DD + KP H +E++AR+ A+ RR S +A G Sbjct: 74 PILILTARDSWQDKVEGLDAGADDYLTKPFHPQELVARLKALIRR---SAGKASPLVYNG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P + + + E+ L E ++ E+LM ++G+ +KT + IY D ++ NV Sbjct: 131 PFSLNTSSLEIRKGDELINLSGSEYKLFEFLMLHQGEVKSKTVLTEHIYDQ-DFDLDSNV 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E I +LRKKL ++ +++ R GY + Sbjct: 190 IEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220 >gi|154484836|ref|ZP_02027284.1| hypothetical protein EUBVEN_02554 [Eubacterium ventriosum ATCC 27560] gi|149733789|gb|EDM49908.1| hypothetical protein EUBVEN_02554 [Eubacterium ventriosum ATCC 27560] Length = 236 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127 A Q+P++ I+ S F SG DD + KP++ E++ RV A+ RR ++ N ++ Sbjct: 83 AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G D E LP++E +L L A+ G+ K Q+ ++G EA + Sbjct: 143 IGSTEFDYDAMTVTTDKERLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYETEA-DP 201 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +E HI ++R++ ++ F+ V + R +GY + Sbjct: 202 HTIEVHIGRIRERFKDNPDFEIV-TMRGIGYKV 233 >gi|126666867|ref|ZP_01737843.1| Two comoponent transcriptional regulator, winged helix family protein [Marinobacter sp. ELB17] gi|126628583|gb|EAZ99204.1| Two comoponent transcriptional regulator, winged helix family protein [Marinobacter sp. ELB17] Length = 228 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 11/166 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R +R + +P+I ++ + + F+ G DD ++KP + RE++AR+ A+ RR+ Sbjct: 62 LDVLRQLRVSAHLPVILLTAHGDETDRIVGFEVGADDYISKPCNPRELVARLHALLRRIA 121 Query: 121 VS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ G +R+ D R G L E +L+ L+A+ G V KT + Sbjct: 122 WDQKADLDDSRSYGDLRLEPDHRRVRQNGTPLDLTATEYEVLQVLLAHAGSVVRKTDLMQ 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYS 219 G E + ++ HIS LRKKL N+ +P +++ R LGYS Sbjct: 182 WALGRRLETYDRT-LDMHISNLRKKLGNE---EPPRIETVRGLGYS 223 >gi|104780529|ref|YP_607027.1| DNA-binding response regulator [Pseudomonas entomophila L48] gi|95109516|emb|CAK14217.1| putative DNA-binding response regulator [Pseudomonas entomophila L48] Length = 231 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 7/163 (4%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE L + R +R P++ ++ + D G DD V KP+ R +LAR+ Sbjct: 57 LMLPGEDGLSICRRVRGQYAGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARI 116 Query: 113 AAIYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 A+ RR + R + GP+ + S R+ + G++ L E +L L +N G+ +++ Sbjct: 117 TALLRRSEAPERRQDLTFGPLHIDSRQREARLGGQLIELTGAEFDLLWLLASNAGRVLSR 176 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +IF+++ G+ + ++ ++ ISK+R K+G DP+ + Sbjct: 177 EEIFTSLRGVGYDG-QDRSIDVRISKIRP----KIGDDPITPR 214 >gi|311029642|ref|ZP_07707732.1| DNA-binding response regulator [Bacillus sp. m3-13] Length = 230 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 20/172 (11%) Query: 41 SAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 S R D+ I+ L G GE +L +I+ S VP+I IS Q+ + +G DD + Sbjct: 46 SERWDMVLIDLMLPGLSGEDIL---KIVTKESDVPIIIISAKLETQSKIAALRAGADDYI 102 Query: 100 NKPIHHREILARVAAIYRRLK----VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154 KP E+ AR+ + RR + VS N I + D + V G V L RE Sbjct: 103 TKPFDIEEVSARIDSCLRRYRDIPSVSITNLMSNKDIVLDPDAKIVTVNGNVLKLTAREY 162 Query: 155 RILEYLMANRGKRVAKTQIFSAI-----YGLFDEAVEENVVESHISKLRKKL 201 IL LM++ K K +F ++ YG ++N + H+S +R KL Sbjct: 163 EILLLLMSSPNKVFTKANLFESVWNEPFYG------DDNTINVHLSNIRNKL 208 >gi|294139273|ref|YP_003555251.1| DNA-binding response regulator [Shewanella violacea DSS12] gi|293325742|dbj|BAJ00473.1| DNA-binding response regulator [Shewanella violacea DSS12] Length = 224 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 82/154 (53%), Gaps = 17/154 (11%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P+I ++ ++ F++G DD + KP H +E+LAR+ A+ +R ++ +A P + Sbjct: 73 TPVIMLTARSQWHEKVEGFNAGADDYLGKPFHTQELLARIHALIQR---AHGKASL-PTK 128 Query: 133 VFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 S + + V+ + F L E ++L+ + + K ++K+Q+ +Y FD+ Sbjct: 129 ELSFSGVVLDENQQSVTVEDKNFELTAMEFKLLKIFLMSPKKLLSKSQLTEKLYQ-FDDE 187 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E NVVE +++ LRK KLG ++++R GY Sbjct: 188 KESNVVEVYVTHLRK----KLGKTAIETRRGQGY 217 >gi|291535098|emb|CBL08210.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 232 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 4/146 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S+VP+I ++ + L F+ GVD+ ++KP + ++ARV AI RR+ Sbjct: 65 EVCREIRETSKVPIIMLTAKGDEEDELTGFELGVDEYISKPFSPKILVARVGAILRRIGK 124 Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G I + V G L +E +L Y M N G +++ +I + ++ Sbjct: 125 APEEGKLLSIGGIVIDQTAHTVTVDGRQIELSFKEFELLTYFMENEGIALSREKILNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR K+ K Sbjct: 185 N-YDYFGDARTIDTHVKKLRAKIGEK 209 >gi|293365220|ref|ZP_06611937.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|306825415|ref|ZP_07458755.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307703759|ref|ZP_07640700.1| response regulator [Streptococcus oralis ATCC 35037] gi|315612983|ref|ZP_07887894.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] gi|322374486|ref|ZP_08049000.1| DNA-binding response regulator CiaR [Streptococcus sp. C300] gi|291316670|gb|EFE57106.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|304432353|gb|EFM35329.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307622594|gb|EFO01590.1| response regulator [Streptococcus oralis ATCC 35037] gi|315315093|gb|EFU63134.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] gi|321279986|gb|EFX57025.1| DNA-binding response regulator CiaR [Streptococcus sp. C300] Length = 224 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K + N G I V + +V+ L Sbjct: 91 FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGDIVVNLSTNEVKVEDTPVEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + KTQIF ++G FD +VVE ++SK+RKKL+ + Sbjct: 151 LGKEFELLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTAFAEN 209 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 210 LQTLRSVGY 218 >gi|238028833|ref|YP_002913064.1| DNA-binding response regulator [Burkholderia glumae BGR1] gi|237878027|gb|ACR30360.1| DNA-binding response regulator [Burkholderia glumae BGR1] Length = 225 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 74/146 (50%), Gaps = 13/146 (8%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128 + P++ +S + + +G DD + KP E+ AR+ + RR + S ++ET Sbjct: 73 RTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDPEEMTARLEVLLRRSQASPAQSETTLE 132 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 GP+ + R G L E R+LEY+M N G+ + +T +F A++G FD Sbjct: 133 VGPLALDLIARKATRDGAEIALLPTEYRVLEYMMRNAGQTITRTMLFEAVWGYHFDPGT- 191 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDS 212 N+++ H+ +LR+K+ DP D+ Sbjct: 192 -NLIDVHMGRLRRKI------DPPDA 210 >gi|210618151|ref|ZP_03291916.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787] gi|210148975|gb|EEA79984.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787] Length = 223 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 19/215 (8%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L + GY +DG LEG + +FE+ S D+ + G V E IIR Sbjct: 22 LTEAGYRVTLANDG--LEGLS--QFEKQYFSLILLDIMMPKI----DGYAVCE---IIRK 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSN-NRA 126 +S +P+I ++ + + F+ DD + KP + +L R+ A+ RR KV N N Sbjct: 71 NSDIPIIMLTAMDEEEAQVKAFELQADDYITKPFSLKLVLMRIEAVLRRTKEKVENHNIF 130 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + I++ ++ EV G+ L + E ILE M +R + + + + + ++G +D + Sbjct: 131 ISHGIKLDTNRHTVEVNGKEINLTQLEFDILEVFMKHRNQVLTRDNLINQVWG-YDFTGD 189 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E V H+ LR+ KL D + + R +GY + Sbjct: 190 EKAVNIHVMNLRR----KLDIDCIQTVRGVGYKFE 220 >gi|77412131|ref|ZP_00788455.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77161838|gb|EAO72825.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] Length = 184 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 4/161 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L R+ A + P+I ++ ++ D G DD + KP E+LAR+ R+ + Sbjct: 23 LKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSSLI 82 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ G IR+ +D + E + L +E ++E M N + + K Q+ S ++G Sbjct: 83 RANQLRLGNIRLNTDSHELESKESSVKLSNKEFLLMEVFMRNAKQIIPKNQLISKVWGPS 142 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 D + E N +E IS LRKKLR K + + +K F GYS++ Sbjct: 143 DNS-EYNQLEVFISFLRKKLRFLKADIEIITTKGF-GYSLE 181 >gi|254501423|ref|ZP_05113574.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] gi|222437494|gb|EEE44173.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] Length = 227 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 33/212 (15%) Query: 37 WLQSSAREDVSAIEAFL---------IGKGEKVLELPRIIR-------------AHSQVP 74 W+ RE+ ++ F +G+ VL L R++ + P Sbjct: 15 WVAGGLREEGHVVDHFTDGKEALIAAMGQDYDVLILDRMVSGLDGLSVLKSLRASEDPTP 74 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134 + ++ + ++ FD+G DD + KP E+ ARV A+ RR + SN + P + Sbjct: 75 ALFLTALGEVDARVEGFDAGGDDYLTKPFAFVELSARVNALGRR-RDSNGTSTIEPTTLR 133 Query: 135 SD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 R E QG+V L +E ++LEY M G+ V +T + ++ + FD Sbjct: 134 YGVLSLDLLARRCERQGQVIDLMAKEFKLLEYFMRRPGRLVTRTMLLEQVWDMSFDPTT- 192 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +VVE+HIS+LR K+ + + ++R GY Sbjct: 193 -SVVETHISRLRSKIDKPFDDELIRTRRGEGY 223 >gi|153937909|ref|YP_001389684.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152933805|gb|ABS39303.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295317774|gb|ADF98151.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 230 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 9/164 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S++P+I IS S + ++G DD + KP + I+A++ + RR Sbjct: 66 RKIRQESKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYA 125 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K+ E ++ + D + E + E + ++E +LEYLM K V + + I+ Sbjct: 126 SKIDEKIVELQGLKFYKDRSEIEFKDERVIITKKEGVLLEYLMKKYPKVVNRDFLLEKIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 E VEEN + ++S++RK+L +KLG D +++ R +GY ++ Sbjct: 186 DDI-EFVEENTLNVNVSRIRKRL-HKLGIEDGIETVRGVGYRLN 227 >gi|317495884|ref|ZP_07954247.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316914061|gb|EFV35544.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 228 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 2/175 (1%) Query: 48 AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE 107 AI ++ K + V + ++ P++ ++ ++ + DSG DD + KP +E Sbjct: 48 AILDVMMPKMDGVTVVKKLRENKKNTPVLLLTAKSEVEDKVYGLDSGADDYLTKPFVIKE 107 Query: 108 ILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 +LARV ++ RR ++N E G + + + + L +E +++E LM N G Sbjct: 108 LLARVRSMTRRQATFTSNVLELGNVSLSKYTFELSTDKDKVRLSNKEYQMMEMLMRNPGN 167 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + Q I+G +D E NVV +IS LRKKL+ + + R +GY+++ Sbjct: 168 VIQTEQFLERIWG-YDSDSEINVVWVNISYLRKKLKALDANIQIKATRNVGYTLE 221 >gi|301052937|ref|YP_003791148.1| response regulator [Bacillus anthracis CI] gi|300375106|gb|ADK04010.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 63 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 122 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 123 KQEQQGEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204 >gi|237742256|ref|ZP_04572737.1| two-component system response regulator [Fusobacterium sp. 4_1_13] gi|229429904|gb|EEO40116.1| two-component system response regulator [Fusobacterium sp. 4_1_13] Length = 233 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 7/176 (3%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 DV ++ L K K E+ + +R + P+I I+ S+ ++ D G +D + KP Sbjct: 56 DVVLLDLMLPKKSGK--EVCQELRKLADTPIIVITAKDSVLDKVELLDLGANDYICKPFA 113 Query: 105 HREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LAR+ R + SNN+ I++ + + E L + E ILEY M Sbjct: 114 MEELLARIRVSTRNKENSNNKHFYLENEIKMDILAKKVFLNEEEIALTKTEFLILEYFMK 173 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 N+G ++ +I ++G +D EE +V+ +I+ LRKK+ +K + + + R GY Sbjct: 174 NKGLSCSREKIIIDVWG-YDFDGEEKIVDVYINSLRKKIDSKSKY--IHTIRGFGY 226 >gi|221069766|ref|ZP_03545871.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220714789|gb|EED70157.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 225 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 4/150 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131 +P++ ++ S++ + D G DD + KP E+ ARV A+ RR + +++ + GP+ Sbjct: 74 LPVLILTAADSIEERVQGLDYGADDYMAKPFALSELEARVRALTRRGMGGASSTIKHGPL 133 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 GR + G++ L RE +LE L+ G+ V+K Q+ + + E V N +E Sbjct: 134 VYDQTGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKDQLVERLCE-WGEEVSNNAIE 192 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +I +LRKK+ G + + R LGY ++ Sbjct: 193 VYIHRLRKKIEK--GPIRIATVRGLGYCLE 220 >gi|321314045|ref|YP_004206332.1| two-component response regulator YclK [Bacillus subtilis BSn5] gi|320020319|gb|ADV95305.1| two-component response regulator (YclK) [Bacillus subtilis BSn5] Length = 227 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 93/197 (47%), Gaps = 19/197 (9%) Query: 12 KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71 K+G+ A F DG LEG+ E W D+ ++ L + + R IR S Sbjct: 22 KEGFEAEFVHDG--LEGYQRFTEENW-------DLIILDIML--PSMDGVTICRKIRETS 70 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNR 125 VP+I ++ + + F+ G DD V KP ++AR+ A+ RR K + + Sbjct: 71 TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKATGKAVIDEDM 130 Query: 126 AETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 ET + R+ + GE V L +E +L YL+ N+ + ++ Q+ ++G + Sbjct: 131 IETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNQRQVFSREQLLEQVWG-YQFY 189 Query: 185 VEENVVESHISKLRKKL 201 +E V+ HI +LRKKL Sbjct: 190 GDERTVDVHIKRLRKKL 206 >gi|262281227|ref|ZP_06059009.1| two-component system DNA-binding response regulator [Acinetobacter calcoaceticus RUH2202] gi|262257458|gb|EEY76194.1| two-component system DNA-binding response regulator [Acinetobacter calcoaceticus RUH2202] Length = 224 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 11/166 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR + P++ IS LQ +D ++G DD + KP E+LAR+ A+ RR Sbjct: 61 MQVLKQIRQRAATPVLIISARDQLQNRVDGLNNGADDYLIKPYEFDELLARIHALLRRSG 120 Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V A ++G + + + +G+ L RE IL LM++ K +K + Sbjct: 121 VEAQLANHEQLLQSGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLE 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y FD V N +E ++ LR KLG D + + R LGY + Sbjct: 181 DKLYD-FDSDVTSNTIEVYVHHLRA----KLGKDFIRTIRGLGYRL 221 >gi|228992299|ref|ZP_04152230.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228998353|ref|ZP_04157945.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229005836|ref|ZP_04163531.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228755416|gb|EEM04766.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228761398|gb|EEM10352.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|228767324|gb|EEM15956.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 225 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEENALSMAGIDVNRLSRTVSVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 +G +D ++ V++HI KLR KL +K Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209 >gi|218129870|ref|ZP_03458674.1| hypothetical protein BACEGG_01451 [Bacteroides eggerthii DSM 20697] gi|317475797|ref|ZP_07935054.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|217987980|gb|EEC54305.1| hypothetical protein BACEGG_01451 [Bacteroides eggerthii DSM 20697] gi|316907957|gb|EFV29654.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 225 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 6/152 (3%) Query: 55 GKGEKVL-ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G G +L EL R+ R S ++ IS SL +D + G DD + KP H E+ AR+ Sbjct: 57 GSGLDLLRELKRLHRTDS---VLIISAKDSLDDKVDGLELGADDYLTKPFHLAELNARIK 113 Query: 114 AIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ RR + + T G + ++ D R EV G L R+E +L Y + N + + K Sbjct: 114 SLIRRRQAQGDVTVTVGNLLLYPDKRQAEVGGVPLQLNRKEFDLLYYFVVNVNRVINKMS 173 Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRN 203 + +++G D+A + + S + LRKKL+ Sbjct: 174 LAESVWGDNIDQADSLDFIYSQVKNLRKKLKQ 205 >gi|295836164|ref|ZP_06823097.1| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74] gi|197695260|gb|EDY42193.1| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74] Length = 228 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 4/138 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP+I ++ +++ + + G DD V KP RE+LAR+ A+ RR + Sbjct: 71 IRTRSAVPVIMVTARADVRSRIHGLNLGADDYVVKPYDTRELLARIHAVARRTHTGPSEP 130 Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 T GP+R+ + R+ V GE L R+E +L L G + QI S ++ E Sbjct: 131 GTTALGPVRLTPETREVSVNGEPVQLTRKEFDLLALLALRPGVVYRREQIISEVWRTSWE 190 Query: 184 AVEENVVESHISKLRKKL 201 +E HI+ LR K+ Sbjct: 191 GTGRT-LEVHIASLRAKI 207 >gi|171059687|ref|YP_001792036.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170777132|gb|ACB35271.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 221 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 8/150 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130 P++ ++ +++ + D G DD V KP+ E+ AR+ A+ RR +V +N G Sbjct: 73 TPVLVLTARAAVRDRVHCLDLGADDYVVKPVDLDELAARLRALVRRAHGQVEDN-LRVGE 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + RD +GE L RE +L L+ N G+ + + QI +Y + VE N + Sbjct: 132 VELRPGSRDVFFRGERIALAVREFDLLHALLLNAGRVLTRDQIEQHLYS-WGREVESNAI 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E HI LRKKL +L +++ R +GY I Sbjct: 191 EVHIHHLRKKLAPEL----IETVRGVGYMI 216 >gi|288574755|ref|ZP_06393112.1| two component transcriptional regulator, winged helix family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570496|gb|EFC92053.1| two component transcriptional regulator, winged helix family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 230 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 4/153 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P++ IS ++ + F+ G DD V P REI+ARV ++ RR +R R Sbjct: 77 LPILIISANKTVDDLVAMFERGADDYVASPCDGREIIARVHSLIRR-SAQCHRPLLTCGR 135 Query: 133 VFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + D R+ +V G PL RRE ILE LM + + ++ +I S ++ + NVV Sbjct: 136 LILDPVARECKVDGTSVPLRRREFDILEILMRHDNQVFSRERIISEVWQKEYDGT-SNVV 194 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + HI LR KLR V + R +GY + + Sbjct: 195 DVHIKYLRDKLREHKMDSIVVTVRGVGYKVQCS 227 >gi|224541825|ref|ZP_03682364.1| hypothetical protein CATMIT_00997 [Catenibacterium mitsuokai DSM 15897] gi|224525248|gb|EEF94353.1| hypothetical protein CATMIT_00997 [Catenibacterium mitsuokai DSM 15897] Length = 236 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 9/177 (5%) Query: 25 SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84 +++G+++L + +D+ + ++ G E + IR +P+I IS Sbjct: 47 AVDGYDAL-------NKVNQDIDMVLLDIMMPGMDGYETCKKIREKYDMPIIFISALSET 99 Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG 144 LD + G DD + KP + A+ AI R K + + I + + V G Sbjct: 100 DNMLDGYHVGADDYITKPFKPSVLYAKCQAILNRSK-KTKKEDKEIIWLDASKHLMYVDG 158 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E LP +E ++E + N+ + ++QI + ++G +D + V+++I KLRKKL Sbjct: 159 EPVALPNKEYLLMELFLNNKNQLFTRSQILNKVWG-YDYYGDGRAVDTYIKKLRKKL 214 >gi|88858419|ref|ZP_01133061.1| Transcriptional regulatory protein CpxR [Pseudoalteromonas tunicata D2] gi|88820036|gb|EAR29849.1| Transcriptional regulatory protein CpxR [Pseudoalteromonas tunicata D2] Length = 227 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 6/162 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ +++R P+I ++ + + G DD + KP +HRE+LARV AI RR++ Sbjct: 61 EVLKLLRQQKLTPVIMLTARGEDFDRIFGLELGADDYLAKPFNHRELLARVKAITRRIEH 120 Query: 121 -VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N+ + I V + R+ G L E IL L+ N G+ ++K QI Sbjct: 121 ITAANKTQNLLWHDIEVKTQSREVYAAGHALLLTGTEYEILHLLLKNAGEIISKEQISEQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + G A + + ++ H+S +RKK+ + + + + R GY Sbjct: 181 VLGRRLAAFDRS-IDMHVSNIRKKIAEHISDERIKTIRGTGY 221 >gi|228920111|ref|ZP_04083460.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839567|gb|EEM84859.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 218 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 58 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE+ L +E +L +L + G+ ++ Q+ ++ Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEADGELISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199 >gi|15644403|ref|NP_229455.1| response regulator DrrA [Thermotoga maritima MSB8] gi|4982229|gb|AAD36722.1|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8] Length = 247 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 30/216 (13%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY L DG EE L+ + EDV ++ G EL R IR+ Sbjct: 31 LSKEGYEVLKAYDG-----------EEALKIANDEDVDMFIVDIMLPGIDGFELVRKIRS 79 Query: 70 ---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 + P+I +S + + G DD + KP RE+LARV AI+RRL + Sbjct: 80 MEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRLSTATQSK 139 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRI---------LEYLMANRGKRVAKTQIFSAI 177 E P ++ + +D E+ E + + R +++ L +L N GK ++ + + Sbjct: 140 EERPKKIIA--KDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDVLLDKL 197 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +G +D + V+ HI +LR K+ DP + K Sbjct: 198 WG-YDYYGDTRTVDVHIRRLRTKIEE----DPSNPK 228 >gi|154246206|ref|YP_001417164.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154160291|gb|ABS67507.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 221 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 87/168 (51%), Gaps = 6/168 (3%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G VL R R + P++ ++ + + D G DD V+KP E ARV A Sbjct: 57 GSGYDVLRAIR--RNGLKTPVMILTARDHVSEKVKALDLGADDYVHKPFALAEFEARVRA 114 Query: 115 IYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR VS+ E GP++ + + ++G L RRE +L L+ GK V K ++ Sbjct: 115 LVRRGFGVSDVVLEFGPLQFDTAQQVARLEGSPLDLRRRELAVLHLLLLQAGKLVPKARL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 S ++GL D+AV N +E +I++LRKKL G + + R LGY ++ Sbjct: 175 ISEVFGL-DDAVGPNALELYIARLRKKL--GAGGLRIRTVRGLGYMLE 219 >gi|251798742|ref|YP_003013473.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546368|gb|ACT03387.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 238 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 90/167 (53%), Gaps = 8/167 (4%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +R S VP++ ++ + + D+G DD + KP +E+++R+ AI+RR+ Sbjct: 62 IQVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRI 121 Query: 120 KVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +AE+ G + V ++ R+ + G L +E +L +L +RGK +++ Q+ Sbjct: 122 QTLPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++ + + +V+ HIS LR K+ +N + + + R +GY + Sbjct: 182 HGVWD-YHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227 >gi|168334087|ref|ZP_02692303.1| two-component system response regulator [Epulopiscium sp. 'N.t. morphotype B'] Length = 227 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 8/144 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121 IR+ S VP+I +S S ++ G DD + KP E++ RV AI+RR+ + Sbjct: 66 IRSKSNVPIIIVSAKDSEIDRINGITMGADDYLIKPFAPMELVVRVGAIFRRMSLQSSNQ 125 Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 SNN E G I++ + ++ GE F L E +L Y+ AN+ + V++ ++ ++ Sbjct: 126 SNNADELTYGDIKLNTSFKEXFCNGEAFALTPTEFALLSYMFANQSRAVSREELLKNVWD 185 Query: 180 LFDEAVEENVVESHISKLRKKLRN 203 + + + V + + +LRKKL N Sbjct: 186 -SEFSNDTKVCDDVLKRLRKKLAN 208 >gi|1903396|gb|AAC45062.1| response regulator protein [Aeromonas jandaei] Length = 223 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 14/223 (6%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 L++D A + D I DG +E F + + +R D ++ L EL Sbjct: 8 LVEDEASIADTLIYALQTDGFEVEWFTLGQQLLSRLAQSRPDFLILDVGLPDISG--FEL 65 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 + +R + PL+ ++ L + G DD V KP RE+ ARV I RR S Sbjct: 66 CKQVRTLTDTPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREVCARVRVILRR---SQ 122 Query: 124 NRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 A+ P+ + R +G+ L R E +L+ LM G+ ++ Q+ ++ + Sbjct: 123 PSAQPAPLLALDEERARIHFRGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWQDAE 182 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221 E+++ V++HI +R KLR DP + + R LGYS++ Sbjct: 183 ESLDRT-VDTHIKTIRAKLREH---DPEANLILTHRGLGYSLE 221 >gi|330963562|gb|EGH63822.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. actinidiae str. M302091] Length = 224 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 3/167 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +++ + +R+ S VP+I I+ L D G DD + KP RE++ARV AI Sbjct: 60 GRDGMDICKELRSFSAVPIIMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 119 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR ++ A G ++V + G L E R+L + G+ ++ Q+ Sbjct: 120 RRTSATDPLAAKG-LQVDEEHYQASFNGVALDLTPVELRLLATFARSPGRVFSRDQLLDR 178 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +Y V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 179 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 224 >gi|228476159|ref|ZP_04060867.1| response regulator ArlR [Staphylococcus hominis SK119] gi|314936439|ref|ZP_07843786.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp. hominis C80] gi|228269982|gb|EEK11462.1| response regulator ArlR [Staphylococcus hominis SK119] gi|313655058|gb|EFS18803.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp. hominis C80] Length = 219 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 2/160 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R P+I I+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 61 LEICRRVRQVQSTPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLRR-Q 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + IR+ D V G+ + E +L L NR + + QI + ++G Sbjct: 120 PHKDIIDINGIRIDIDAFKVTVDGKQLDFTKTEYDLLYLLATNRNHVLQREQILNHVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 179 YNSEVETNVVDVYIRYLRNKLKPFNKEKVIETVRGVGYVI 218 >gi|270308399|ref|YP_003330457.1| DNA-binding response regulator [Dehalococcoides sp. VS] gi|270154291|gb|ACZ62129.1| DNA-binding response regulator [Dehalococcoides sp. VS] Length = 222 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 105/223 (47%), Gaps = 28/223 (12%) Query: 8 RALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66 RAL + G++ + DG+S E F + EF+ + D + IE + R+ Sbjct: 18 RALGELGHVVEYACDGISGEYFARNGEFDLMILDIGLSDKNGIE------------VCRM 65 Query: 67 IRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNN 124 +RA + +P++ ++ +L++ + D+G DD + KP + E+ AR+ A+ RR +V Sbjct: 66 VRAEGAALPILMLTAKDTLESKVKSLDAGADDYLCKPFAYSELFARIRALQRRASRVMAP 125 Query: 125 RAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 E G I F + EV+ L E ++LEY + + ++ + ++G Sbjct: 126 VVEIGGI--FFNNLSHEVKNGNNEIKLTSAEFQMLEYFITMPNVLITRSMMEEHLWG--- 180 Query: 183 EAVEENVVESHISKLRKKLRNKLGFD----PVDSKRFLGYSID 221 E + I L KKLR KLG+D P+ + R GY +D Sbjct: 181 --AESISASNSIDSLIKKLRQKLGWDARTGPIKTLRGAGYRLD 221 >gi|90577545|ref|ZP_01233356.1| Response regulator [Vibrio angustum S14] gi|90440631|gb|EAS65811.1| Response regulator [Vibrio angustum S14] Length = 219 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 10/155 (6%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 P++ +S L +D ++G DD + KP E++ARV A RR N Sbjct: 72 NCPVVILSARNELTQRVDGLNAGADDYLTKPFQMVELVARVRAQLRR-STGNASPVIQAG 130 Query: 132 RVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 + D R +V +G++ L E ++L YLM N K +++T++ IY FD + N Sbjct: 131 NLSLDTRTSKVTWEGQIIDLTALEFKVLSYLMHNTDKVISRTELVEHIYKQDFDR--DSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +E I ++R+ K+G D + + R LGY I+ N Sbjct: 189 TIEVFIGRIRR----KIGNDVIKTVRGLGYRINAN 219 >gi|94985622|ref|YP_604986.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94555903|gb|ABF45817.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 227 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 8/185 (4%) Query: 41 SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100 +A+ D+ ++ L G+ L++ + +RA P+I ++ + + G DD V Sbjct: 44 AAQPDLILLDVMLPGRSG--LDVLKTVRADGPTPVILVTARAEETDQIVGLELGADDYVV 101 Query: 101 KPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRI 156 KP RE++ARV A+ RR + E GP+ V V G+ L E R+ Sbjct: 102 KPFRPREVMARVKAVLRRAHAALEGTERPLRVGPLEVDRRAARARVNGQPLGLTPAEFRL 161 Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 L YL G+ + ++ +A L D E VV++H++ +R+KL + + + R + Sbjct: 162 LAYLAQVPGRACTREELLAA--ALPDSDALERVVDAHLASVRRKLDAAQAGELLHTVRGV 219 Query: 217 GYSID 221 GY ++ Sbjct: 220 GYRLE 224 >gi|302520129|ref|ZP_07272471.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302429024|gb|EFL00840.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 173 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 5/144 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I + S + + G DD V KP RE++AR+ A+ RR Sbjct: 9 EVCRQLRGRSNVPVIMGTAKDSEIEKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 68 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 69 PEEVTPTALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 128 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G D + ++ H+ +LR K+ Sbjct: 129 WG-ADYVGDTKTLDVHVKRLRAKI 151 >gi|226314253|ref|YP_002774149.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226097203|dbj|BAH45645.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 241 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 110/237 (46%), Gaps = 32/237 (13%) Query: 11 VKDGYIALFGDDGVSL---------EGFNSLE----FEEWLQSSAREDVSAIEAFLIGKG 57 +KD I L D+ L EGF+S++ EE L + R+ I + Sbjct: 1 MKDAAILLVDDEQAILQLLETVLHKEGFHSIDKVKTSEEALCACERKSYDLIVLDVTLPN 60 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E IR + P++ +S + L F G DD V KP + EI+AR+ A+ R Sbjct: 61 MSGIEACPFIRRLTDAPILFLSARDTDFDKLTGFAVGGDDYVTKPFNPMEIVARIKALLR 120 Query: 118 RLKVSNNRAETGPIR-VFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R + ++ T P++ V+ GR + V+G+V P P ++L +L N + Sbjct: 121 RTRKTSAAVPTAPVQGVYDFGRFQVHEAAGELCVEGKVIPCPSLVFQLLLFLCKNPNRIF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSI 220 +K++++ ++G+ + ++N + HI ++R+++ DP + R LGY + Sbjct: 181 SKSELYERVWGV-NSLRDDNTIMVHIHRIRERIEP----DPAQPEFLVNVRGLGYKM 232 >gi|319788971|ref|YP_004090286.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] gi|315450838|gb|ADU24400.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 222 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD + D +G S+ S L ++ R D+ ++ L G GE++ Sbjct: 4 ILIIDDDTHINDIVSKALRSEGYSVTSAYSGTEALLLLNNYRPDLILLDLMLPGLSGEEL 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L PRI +P+I +S + +D G D + KP E+LAR+ R+ Sbjct: 64 L--PRI----GDIPVIVVSAKADVTNKVDLLIGGAADYITKPFDMNELLARILVQLRKNA 117 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S+ R+ I + D +G L R E IL+ LM+N + VAK I I Sbjct: 118 RSDERSFLTYHEITLDMDKHTISAKGNENKLTRTEYAILKLLMSNHDQVVAKLTILDRI- 176 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 L E+ ++SHI LRKKL+ G + + S +G+ + Sbjct: 177 SLDTPDCTEDSLKSHIYNLRKKLKALTGKEYISSVWGIGFML 218 >gi|161614534|ref|YP_001588499.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|238910949|ref|ZP_04654786.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161363898|gb|ABX67666.1| hypothetical protein SPAB_02283 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|322616607|gb|EFY13516.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619878|gb|EFY16752.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622446|gb|EFY19291.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629436|gb|EFY26213.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632932|gb|EFY29675.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636823|gb|EFY33526.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641377|gb|EFY38016.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645142|gb|EFY41671.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652305|gb|EFY48661.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655657|gb|EFY51959.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660962|gb|EFY57192.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665452|gb|EFY61640.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667571|gb|EFY63732.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322677561|gb|EFY73625.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679774|gb|EFY75813.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|323193061|gb|EFZ78283.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199442|gb|EFZ84535.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203630|gb|EFZ88652.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208829|gb|EFZ93767.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209871|gb|EFZ94787.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217803|gb|EGA02518.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323226634|gb|EGA10834.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229606|gb|EGA13729.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232831|gb|EGA16927.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240133|gb|EGA24177.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323254304|gb|EGA38121.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255570|gb|EGA39329.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323267000|gb|EGA50485.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272104|gb|EGA55518.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 223 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 5/218 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ ++ + D++ ++ L E L Sbjct: 4 LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R+ +P++ ++ Q ++ SG DD V KP H E++AR+ A+ RR Sbjct: 62 LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ V EV L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E E + ++ + +LRKK++ + D + + R GY Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGY 218 >gi|325123266|gb|ADY82789.1| two-component system, OmpR family, response regulator [Acinetobacter calcoaceticus PHEA-2] Length = 219 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 11/166 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR + P++ IS LQ +D + G DD + KP E+LAR+ A+ RR Sbjct: 56 MQVLKQIRQRAATPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSG 115 Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V A ++G + + + +G+ L RE IL LM++ K +K + Sbjct: 116 VEAQLANHEQLLQSGDLVLNVEQHIATFKGQRIDLSNREWAILVPLMSHPNKIFSKANLE 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y FD V N +E ++ LR KLG D + + R LGY + Sbjct: 176 DKLYD-FDSDVTSNTIEVYVHHLRA----KLGKDFIRTIRGLGYRL 216 >gi|269216812|ref|ZP_06160666.1| subtilin biosynthesis regulatory protein SpaR [Slackia exigua ATCC 700122] gi|269129619|gb|EEZ60703.1| subtilin biosynthesis regulatory protein SpaR [Slackia exigua ATCC 700122] Length = 244 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 15/212 (7%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L +DG+ +D VS+ G ++ L + E L+G+ I Sbjct: 43 RVLARDGHAVDAANDPVSVLGLALSRYDLILCDVMMPGMDGFE--LVGR----------I 90 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126 R P++ ++ + + + G DD + KP E+ A+V A RR +V + Sbjct: 91 RHLVDAPILFLTAKVAEEDAVFGLGLGADDYIRKPFGIVELRAKVGAHVRREERVRTHML 150 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G +RV D R+ G PL E + E L +RG+ +++ QI +G +A Sbjct: 151 ALGDVRVDLDARELSAHGSPVPLTPTEYAVCELLAMHRGQVLSREQIRERAFGWASDA-G 209 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ + H+S R KLR + DP+++ R +GY Sbjct: 210 DDAISMHVSNARAKLR-RANVDPIETVRGMGY 240 >gi|255319016|ref|ZP_05360238.1| transcriptional regulatory protein QseB [Acinetobacter radioresistens SK82] gi|255303921|gb|EET83116.1| transcriptional regulatory protein QseB [Acinetobacter radioresistens SK82] Length = 221 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 89/177 (50%), Gaps = 10/177 (5%) Query: 47 SAIEAFLIGKG---EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 SA++ L+ G + LEL R R P++ ++ + ++ + G DD + KP Sbjct: 43 SAVDLCLLDLGLPDQDGLELLRKWRQDQIHTPILVLTARIQTRQCIEALNLGADDYLTKP 102 Query: 103 IHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161 E++AR+ A+ RR + S+N + + + D ++ Q + L RRE +LE LM Sbjct: 103 FELDELVARLHALTRRHRGFSSNVLQFEDLSLNQDTQEVFYQHQAIQLSRREYSLLETLM 162 Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ + + Q+ +YG + +++E N + HI LR+ KL D + + R +GY Sbjct: 163 SHPNQILKNEQLLDKLYG-YQDSIESNALNVHIYHLRQ----KLNADFIQTIRGVGY 214 >gi|227502538|ref|ZP_03932587.1| response regulator [Corynebacterium accolens ATCC 49725] gi|306835103|ref|ZP_07468144.1| response regulator [Corynebacterium accolens ATCC 49726] gi|227076700|gb|EEI14663.1| response regulator [Corynebacterium accolens ATCC 49725] gi|304569018|gb|EFM44542.1| response regulator [Corynebacterium accolens ATCC 49726] Length = 236 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 24/195 (12%) Query: 27 EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF +L+ L+ A D+ + L+ G ++ + +RA S VP+I ++ + Sbjct: 24 EGFEPIIALDGPSALEKFADNDIDIVLLDLMLPGMSGTDVCKQLRATSSVPVIMVTARDA 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---------GPIRVF 134 + + G DD V KP RE++AR+ A+ RR N++A ++ Sbjct: 84 EIDKVVGLELGADDYVTKPYSSRELIARIRAVLRR---GNDQASNADAAEGAEAEDEQIL 140 Query: 135 SDGR---DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 S GR D E V GE +P +E +LEYL+ N G+ + + Q+ I+G D + Sbjct: 141 SGGRVKMDVERHIVTVAGEPVAMPLKEFDLLEYLLRNAGRVLTRGQLIDRIWG-ADYVGD 199 Query: 187 ENVVESHISKLRKKL 201 ++ HI +LR K+ Sbjct: 200 TKTLDVHIKRLRTKI 214 >gi|210620624|ref|ZP_03292148.1| hypothetical protein CLOHIR_00091 [Clostridium hiranonis DSM 13275] gi|210155233|gb|EEA86239.1| hypothetical protein CLOHIR_00091 [Clostridium hiranonis DSM 13275] Length = 231 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 2/150 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPI 131 VP+I ++ + + DSG +D + KP +E+LAR+ + R VSN T G + Sbjct: 76 VPIIMLTAKSEVDDKVLGLDSGANDYLTKPFSAKELLARLRVLTREKSVSNTSIITVGNV 135 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + + F L +E +++E M N V+ Q+ ++G +D +E NVV Sbjct: 136 SLDTTTFEMYSPNGKFRLTNKEYQMMEIFMRNPKHIVSTEQLIEKVWG-YDSDMENNVVW 194 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +IS LRKKL + + + R LGYS++ Sbjct: 195 VYISYLRKKLISLNANIIIKANRNLGYSLE 224 >gi|219668333|ref|YP_002458768.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538593|gb|ACL20332.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 225 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 6/153 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130 P++ ++ ++ ++ D G DD + KP E+LAR+ AI RR + + N G Sbjct: 72 STPILMLTAKGEIEDRIEGLDHGADDYLTKPFAMGELLARIRAITRRKTEFAPNLLTVGN 131 Query: 131 IRVFSDGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 +++ D + E+ GE L +E +++E +M++ + ++ Q I+G +D E N Sbjct: 132 LQL--DRANYELSGEKGSIRLGNKEYQMMEMMMSSPNRLISTEQFMERIWG-YDAEAEIN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VV +IS LRKKL + + R LGY+++ Sbjct: 189 VVWVYISYLRKKLTALGSTVTIKASRGLGYTLE 221 >gi|323342107|ref|ZP_08082340.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464532|gb|EFY09725.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 224 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 5/133 (3%) Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN--RAETGPIRVFSDGRDPEVQGE 145 L+ FD+GVDD ++KP RE+ AR+ A RR+ +++ R E G I + D V Sbjct: 90 LEAFDAGVDDYLSKPFSPRELSARITAHLRRVDMNHELRRIEVGDIVINLDQHTVVVGSN 149 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 L ++E +L YL+ N + + QI S I+ FD + +V+ HI KLR KL + Sbjct: 150 PVELTKKEFDLLIYLLQNENIVLTRDQILSEIWH-FDYDGDTRIVDVHIFKLRTKLED-- 206 Query: 206 GFDPVDSKRFLGY 218 ++S R +GY Sbjct: 207 SNVKINSLRGVGY 219 >gi|255322381|ref|ZP_05363527.1| two component transcriptional regulator, winged helix family [Campylobacter showae RM3277] gi|255300754|gb|EET80025.1| two component transcriptional regulator, winged helix family [Campylobacter showae RM3277] Length = 224 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 4/159 (2%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + I+ + +P++ I+ ++ F +G DD ++KP++ +E++ R+ A+ RR K Sbjct: 62 ELTKQIKLLDESLPVLMITAKSGMEGMEKGFVTGADDYMSKPLNLKELILRINALLRRAK 121 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S R + ++ GE L +E +L L++N GK + +I I+G Sbjct: 122 IASGKRLRFKNSELDYMALSLKIGGEAVELAPKEFYLLFLLLSNPGKIFTRLEIMQEIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +D +E V++H+ KLR+KL F+ + + R +GY Sbjct: 182 -YDTDSDERAVDTHVKKLRRKLEGCTDFE-IATVRGIGY 218 >gi|222102367|ref|YP_002546508.1| two component response regulator [Agrobacterium vitis S4] gi|221739611|gb|ACM40313.1| two component response regulator [Agrobacterium vitis S4] Length = 225 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 4/163 (2%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L + +RA S + P++ ++ + ++ ++G DD + KP E++AR+ A+ RR Sbjct: 60 LNLVKSLRAASVRTPVLFLTAMSGVDDRVEGLEAGGDDYLVKPFAFSELVARINALVRRP 119 Query: 120 KVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + + G + + R G++ L RE +LE LM N G+ + KT I Sbjct: 120 PIAAEKTKLRVGDLEMDLVARTTSRAGQLIELLPREFSLLELLMRNEGRVLTKTMFLEKI 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + F+ + +VVE+HIS+LR K+ + + + GY++ Sbjct: 180 WN-FNFDPQSSVVETHISRLRAKIDKPFSTSLLHTVKNTGYTL 221 >gi|188590225|ref|YP_001921389.1| subtilin biosynthesis regulatory protein SpaR [Clostridium botulinum E3 str. Alaska E43] gi|188500506|gb|ACD53642.1| putative lantibiotic biosynthesis regulatory protein [Clostridium botulinum E3 str. Alaska E43] Length = 220 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 3/126 (2%) Query: 94 GVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152 G DD + KP E+ ARV A RR + N ++ + + ++ E+ P + Sbjct: 93 GGDDYITKPFGISELRARVNAHLRRECREKQNAFYISELKFYINAKEVYHDDELVPFTKS 152 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E I EYL N G+ +K QI+ +I+G FD + + HI +R KL+ K+G + +++ Sbjct: 153 EYNICEYLALNHGQVFSKEQIYESIFG-FDGHSDTTAIVEHIKNIRSKLK-KIGINTIET 210 Query: 213 KRFLGY 218 +GY Sbjct: 211 VWGIGY 216 >gi|326386564|ref|ZP_08208186.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326208879|gb|EGD59674.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 188 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 83/176 (47%), Gaps = 22/176 (12%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVD 96 + + ++ DV ++ L G L L + +RA P++ +S S + +G D Sbjct: 1 MATDSQFDVVVLDRML--PGMDGLSLLKAMRAADVDTPVLMLSALGSTDDRVSGLTAGAD 58 Query: 97 DVVNKPIHHREILARVAAIYRRLKVSNNRAETG----------PIRVFSDGRDPEVQGEV 146 D + KP E+LARV A+ RR ETG RV G G Sbjct: 59 DYLGKPFSFAELLARVQALIRRRSGPAKAQETGLRCGDLELDRLTRVVKRG------GRK 112 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201 L RE R+LEYLM ++G+ V +T + A++ FD NV++ HIS+LR+K+ Sbjct: 113 IALQPREFRLLEYLMLHQGEVVTRTMLLEAVWDYHFDPGT--NVIDVHISRLRRKI 166 >gi|319892417|ref|YP_004149292.1| Putative response regulator ArlR [Staphylococcus pseudintermedius HKU10-03] gi|317162113|gb|ADV05656.1| Putative response regulator ArlR [Staphylococcus pseudintermedius HKU10-03] gi|323464480|gb|ADX76633.1| two-component response regulator ArlR [Staphylococcus pseudintermedius ED99] Length = 225 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 5/164 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + +R P+I I+ + + D G DD + KP E+LAR A+ RR Sbjct: 61 LEVCKRLRTQKDTPIIMITAKGEIYDKVTGLDIGADDYIVKPFEIEELLARSRALIRRYS 120 Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N N E I++ Q E L + E +L L N+ + + + QI Sbjct: 121 DENVSDTNVVEIDGIKIDKSAFHVTYQSEKLELTKTEFDLLLLLAENKNRVLHREQILDH 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 181 VWG-YESEVETNVVDVYIRYLRNKLKRIDKQKLIETVRGVGYVI 223 >gi|163842879|ref|YP_001627283.1| two component transcriptional regulator [Brucella suis ATCC 23445] gi|163673602|gb|ABY37713.1| two component transcriptional regulator, winged helix family [Brucella suis ATCC 23445] Length = 229 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 8/155 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 R+ +P++ ++ + D+G DD V KP H E+LAR+ A+ RR +++ Sbjct: 68 RSGRTMPVLMLTARDRWSDKVAGIDAGADDYVAKPFHIEEVLARLRALIRRAAGHASSEF 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 GP+ + + + G L E R+L Y+M + + V++T++ +Y FD Sbjct: 128 VCGPLHLDTKTSKASIDGVALKLTSHEYRLLSYMMHHMDEVVSRTELVEHLYDQDFDR-- 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E + +LRK K+G D +++ R GY + Sbjct: 186 DSNTIEVFVGRLRK----KMGVDLIETVRGRGYRM 216 >gi|312200116|ref|YP_004020177.1| transcriptional regulator [Frankia sp. EuI1c] gi|311231452|gb|ADP84307.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 227 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRALRQKSSVPVIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRGS 121 Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + A E G +R+ + V G LP +E +LE + N G+ + + Q+ Sbjct: 122 EPDEAAPVTLEAGGVRMDVERHVVTVHGAAVALPLKEFELLEMFLRNTGRVLTRGQLIDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ ++ G +P + + R LGY + Sbjct: 182 VWG-SDYVGDTKTLDVHVKRLRAKIESEPG-NPRHLVTVRGLGYKFE 226 >gi|239617803|ref|YP_002941125.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506634|gb|ACR80121.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 228 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 17/208 (8%) Query: 24 VSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR--AHSQVPLIGI 78 + LEGF + + E L + + I +I G +E+ R +R SQVP++ + Sbjct: 20 LELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGIEICRFLRDEEKSQVPILML 79 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFS 135 + S++ ++ + G DD + KP RE++ARV A+ RR +V R ET G + + Sbjct: 80 TALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRNQVV--RQETLKYGDLVMNL 137 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--ENVVESH 193 R+ +GE L +E +LE M N G ++ QI L++ E N+V+ + Sbjct: 138 QTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDK---LWESGFEPRSNIVDVY 194 Query: 194 ISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 + LRKKL+ G+D +++ +GY + Sbjct: 195 VLYLRKKLK-PFGYDEKIETVHNIGYRL 221 >gi|195953641|ref|YP_002121931.1| two component transcriptional regulator, winged helix family [Hydrogenobaculum sp. Y04AAS1] gi|195933253|gb|ACG57953.1| two component transcriptional regulator, winged helix family [Hydrogenobaculum sp. Y04AAS1] Length = 229 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 77/144 (53%), Gaps = 6/144 (4%) Query: 63 LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + +I+R + +P+I ++ + ++ F++G DD + KP +E++AR+ A+ R Sbjct: 65 IAKILRQNILYKDIPIIFLTAKSEEEDKIEGFNAGADDYITKPFSSKELIARIRAVLNRY 124 Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K ++ N+ + + + D + + G+ L + E RIL+YL+ N K + + +I + + Sbjct: 125 KKTITTNKLKVENLELDEDKMEVTLDGKPINLTKTEFRILKYLLENIDKIMTRDKIINML 184 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 + + + + V+ HI LR KL Sbjct: 185 WS-YGTDINDRTVDVHIKHLRDKL 207 >gi|298370202|ref|ZP_06981518.1| DNA-binding response regulator CreB [Neisseria sp. oral taxon 014 str. F0314] gi|298281662|gb|EFI23151.1| DNA-binding response regulator CreB [Neisseria sp. oral taxon 014 str. F0314] Length = 226 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 82/165 (49%), Gaps = 8/165 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + +R P+I ++ + + G DD + KP RE++ARV A+ RR + Sbjct: 63 ELLKTLRPQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRTQT 122 Query: 122 -SNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + AE+ P V+ D QG PL + E R+L L+ G+ ++ ++ +A+ Sbjct: 123 RPASEAESAP--VWHDDAPACCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELLTAM 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 +G + + + + +HI LR KLR + +P+ + LGYS + Sbjct: 181 FG-GNRPSDPHTINTHIRALRHKLRAAGVAGEPIRTHHGLGYSFN 224 >gi|298291237|ref|YP_003693176.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296927748|gb|ADH88557.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 220 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 104/227 (45%), Gaps = 21/227 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D A++ DG A G++++ + E S+R D ++ L G G V Sbjct: 3 ILLVEDDAVLADGIRAGLWLAGLTVDAVGNCADAEAALGSSRFDAVVLDLMLPDGSGFDV 62 Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L +RA H P+I ++ + D G DD + KP E+ AR+ A+ RR Sbjct: 63 LA---TLRARHDATPVIVLTALDETPDRVRGLDGGADDFLGKPFDLDELAARLRALVRR- 118 Query: 120 KVSNNRAETGPI----RVFSDGRDPEVQGEVFPLP--RRERRILEYLMANRGKRVAKTQI 173 RA P+ V D V + P+P RRE +L LM G +K ++ Sbjct: 119 --GGGRAS--PLLTHGTVALDPATLSVSIDEVPVPVSRREFAVLSMLMERPGVIRSKGEL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E +E N VE +I LR KLG D +++ R LGY + Sbjct: 175 EERLYG-WQEEIESNTVEVYIHNLRA----KLGRDLIETVRGLGYRL 216 >gi|190575791|ref|YP_001973636.1| putative two-component response regulator [Stenotrophomonas maltophilia K279a] gi|190013713|emb|CAQ47348.1| putative two-component response regulator [Stenotrophomonas maltophilia K279a] Length = 229 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 P++ ++ ++ + D G DD + KP RE AR + RR + ++ + G Sbjct: 73 TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRARGQASEVVQIGGF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + + GE LP RE R+LE L+ G+ V K +I + ++G FD+ N +E Sbjct: 133 QFDNAAHRVSLNGEPIELPNREYRLLEILVGRLGQVVGKDEIGNGLFG-FDDEAGPNAIE 191 Query: 192 SHISKLRKKL 201 ++ +LRKKL Sbjct: 192 LYVGRLRKKL 201 >gi|325263927|ref|ZP_08130660.1| DNA-binding response regulator DltR [Clostridium sp. D5] gi|324030965|gb|EGB92247.1| DNA-binding response regulator DltR [Clostridium sp. D5] Length = 227 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 14/158 (8%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGP 130 + P+I ++ L L D+G DD + KP E+LAR I RR K+ R G Sbjct: 72 ETPVIMLTARSELSDKLKGLDTGADDYLTKPFEMEELLARARVITRRQGKMETERPGFGD 131 Query: 131 IR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 I +++ EVQ L ++E +ILEYL+ N + V + QI ++G +D Sbjct: 132 ISLDLRTCILYNQDSGAEVQ-----LGKKEFQILEYLIKNSSQIVTREQIVQKLWG-YDC 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E N VE +IS R+K++ + + R +GY ++ Sbjct: 186 NAEYNNVEVYISFTRRKMKFIECQARIKAVRGIGYRLE 223 >gi|320353761|ref|YP_004195100.1| winged helix family two component transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320122263|gb|ADW17809.1| two component transcriptional regulator, winged helix family [Desulfobulbus propionicus DSM 2032] Length = 223 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 17/191 (8%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 W++ + R D+ ++ L G+ +E+ + IR S VP+I ++ L + G D Sbjct: 40 WVRGN-RPDLILLDLMLPGRDG--MEICKEIRTFSTVPIIMVTARIEEIDRLLGLELGAD 96 Query: 97 DVVNKPIHHREILARVAAIYRRLKVSNN-----RAETGPIRVFSDGRDPEVQGEVFPLPR 151 D V KP RE++ARV A+ RR R + +RV DG ++ F Sbjct: 97 DYVCKPFSPREVVARVKAVLRRTSARTPAPHGLRVDASTMRVSLDGHHLDLTAVEF---- 152 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPV 210 ++L +L+A+ G+ ++ Q+ +Y V + ++SHI KLR+KL + G + + Sbjct: 153 ---KLLAFLLAHPGRIYSREQLMEGMYP-DQRIVNDRTIDSHIKKLRRKLDLARSGCNLI 208 Query: 211 DSKRFLGYSID 221 S +GY+ D Sbjct: 209 RSVYGVGYTFD 219 >gi|325679778|ref|ZP_08159352.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8] gi|324108593|gb|EGC02835.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8] Length = 228 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 3/145 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R S VP+I S + ++ FD G DD + KP +E+L+RV A+ RR Sbjct: 63 FEICRQLREASHVPVIFASARTAEDDRINSFDIGGDDYLQKPYSMKELLSRVNALMRRAY 122 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G +++ + R G L +RE +L L N+ V K ++ S ++ Sbjct: 123 GGEVDGSLGFGDVKINTASRTVIKGGRNVALAQREFDLLCCLCRNKNTAVPKDKLISEVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203 G F E VE + + HI LR+KL + Sbjct: 183 GAFSE-VEPSTLTVHIRWLREKLED 206 >gi|289423154|ref|ZP_06424969.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptostreptococcus anaerobius 653-L] gi|289156485|gb|EFD05135.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptostreptococcus anaerobius 653-L] Length = 231 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 16/173 (9%) Query: 61 LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL IIR+ + + +I ++ + L+ G DD V KP +E+ ARV I + Sbjct: 61 IELLNIIRSDEDYDDIAVIMLTAKNMEEDKLEGLTIGADDYVTKPFSIKELSARVKNILK 120 Query: 118 RL----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 R K+ +N+ + G + + D + ++ + L +E IL+ L+ N+G+ Sbjct: 121 RYNKQDSNNKTNKIGSNKLKAGDLILELDRHEVYLRDRLIDLTVKEYGILKLLLENKGRV 180 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ I I+G +D E V+ HI LRKKL F +D+ R LGY I Sbjct: 181 ISREYILEKIWG-YDYFGETRTVDVHIRYLRKKLGEDENF--IDTIRGLGYKI 230 >gi|218134349|ref|ZP_03463153.1| hypothetical protein BACPEC_02242 [Bacteroides pectinophilus ATCC 43243] gi|217989734|gb|EEC55745.1| hypothetical protein BACPEC_02242 [Bacteroides pectinophilus ATCC 43243] Length = 223 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127 A Q+P++ I+ S F SG DD + KP++ E++ RV A+ RR ++ N ++ Sbjct: 70 AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 129 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G D E LP++E +L L A+ G+ K Q+ ++G EA + Sbjct: 130 IGSTEFDYDAMTVITDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWGYETEA-DP 188 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +E HI ++R++ ++ F+ V + R +GY + Sbjct: 189 HTIEVHIGRIRERFKDNPDFEIV-TMRGIGYKV 220 >gi|41407319|ref|NP_960155.1| hypothetical protein MAP1221 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395671|gb|AAS03538.1| hypothetical protein MAP_1221 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 219 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G E E E L R D+ ++ L G+ Sbjct: 1 MLVVEDSETIREMVSEALTEVGYHTEARRDGERLEELLDGIRPDLVVLDVMLPGR--DGF 58 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +IR + ++ I+ L L D G DD V KP E+++RV A+ RR Sbjct: 59 ALIDVIRDWGDIGIVLITARDGLPDRLRGLDGGADDYVIKPFELAELVSRVGAVLRRRGR 118 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + + G L E R+L +L+ RG+ V+ QI + ++G Sbjct: 119 LPQVIQVGDVTLDPGAGVAARGGHRLDLTATELRVLTFLVEQRGRIVSAGQILNGVWGY- 177 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +A + N+V+ H+S LR+KL G + + R +GY + Sbjct: 178 -DAYDPNLVQVHVSGLRRKLEAH-GPRILHTVRGIGYRL 214 >gi|322374762|ref|ZP_08049276.1| DNA-binding response regulator [Streptococcus sp. C300] gi|321280262|gb|EFX57301.1| DNA-binding response regulator [Streptococcus sp. C300] Length = 225 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP + +LA+V + RR Sbjct: 67 IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E G + + + D QGEV L + E +IL L + G VA+ + ++ D Sbjct: 127 SLLEYGGVILNTKSMDLHYQGEVLSLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGYGL 222 >gi|299144284|ref|ZP_07037364.1| DNA-binding response regulator VncR [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518769|gb|EFI42508.1| DNA-binding response regulator VncR [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 217 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 82/161 (50%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S++P++ ++ + + +D F + D + KP + ARV ++ ++ Sbjct: 59 LEVLREIRKKSKLPILILTAFSDEEYKIDAFTNLADGYIEKPFSLPVLKARVDSLIKKNF 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E I V ++ GE + +E IL+YL+ N G+ + + QI ++ Sbjct: 119 GLIEKFEYKNIEVNFTSYTAKINGESIDINAKELEILKYLLDNEGQALTRMQIIDNVWKE 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRK KLG D + + R +GY ++ Sbjct: 179 TEEIPYDRVIDVYIKELRK----KLGLDCITTIRNVGYKLE 215 >gi|300779924|ref|ZP_07089780.1| response regulator [Corynebacterium genitalium ATCC 33030] gi|300534034|gb|EFK55093.1| response regulator [Corynebacterium genitalium ATCC 33030] Length = 233 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 11/148 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL------- 119 +RA S VP+I ++ + + + G DD V KP RE++AR+ A+ RR Sbjct: 68 LRATSDVPIIMVTARDTEIDKVVGLELGADDYVTKPYSTRELIARIRAVLRRRSDVADPP 127 Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + S N E G +R+ + V + P+P +E +LEYLM N G+ + + Q+ Sbjct: 128 GEEESSENILEGGRVRLDVERHTVYVDDQPVPMPLKEFDLLEYLMRNAGRVLTRGQLIDR 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204 I+G D + ++ H+ +LR K+ + Sbjct: 188 IWG-SDYVGDTKTLDVHVKRLRTKIEQE 214 >gi|255528289|ref|ZP_05395103.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255508024|gb|EET84450.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 224 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 2/151 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130 P++ ++ ++ + D+G DD ++KP E+LARV A+ RR + + N + G Sbjct: 72 HTPILMLTAKAEIEDRIVGLDAGADDYLSKPFAMGELLARVRAMTRRKSEFTPNLVKVGN 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I + + + + L +E ++LE LM+N ++ Q I+G +D E NVV Sbjct: 132 ISLNKENYELSNEKSSLRLGNKEFQMLEMLMSNPKCLISTEQFMERIWG-YDAEAEINVV 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +IS LRKKL + + + R +GY+++ Sbjct: 191 WVYISYLRKKLASLNANIKIKAGRGIGYTLE 221 >gi|254519605|ref|ZP_05131661.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226913354|gb|EEH98555.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 226 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 3/141 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 L ++ ++ P+I ++ ++ + D G DD + KP E+LAR+ +I RR Sbjct: 63 LKQLRKSGISTPVIMLTAKSQIEDRVRGLDLGADDYLTKPFATEELLARLRSITRRKGNV 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V++N G I + D D +V E L +E I++Y M V+K + + ++G Sbjct: 123 VNDNILTYGDISLNLDTYDLDVNNENIRLTLKEFEIIKYFMERPKCVVSKDDLITKLWG- 181 Query: 181 FDEAVEENVVESHISKLRKKL 201 FD VE N +E +IS +RKKL Sbjct: 182 FDSEVEYNNIEVYISFIRKKL 202 >gi|120611665|ref|YP_971343.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590129|gb|ABM33569.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] Length = 230 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 9/171 (5%) Query: 57 GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G L+L + +RA QVP++ ++ S++ + G DD + KP E+LAR+ A+ Sbjct: 59 GMTGLDLCQSLRAEGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEAL 118 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAK 170 RR + RA T ++V D E G L +E LE LM+ G+ ++ Sbjct: 119 LRRGREQRPRATT--LQVADLVLDLERMQASRAGRPIALTAKELAFLELLMSAPGRLCSR 176 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +I S ++G+ ++ + NVV+ ++ +LR K+ + + R LGY +D Sbjct: 177 ERILSNVWGMHEDPL-TNVVDVYVRRLRSKIDEGHPLALLKTVRGLGYRLD 226 >gi|33597212|ref|NP_884855.1| two-component response regulatory protein [Bordetella parapertussis 12822] gi|33573639|emb|CAE37924.1| two-component response regulatory protein [Bordetella parapertussis] Length = 229 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA + V P++ ++ S++ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLRRLRARNSVLPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRG 119 Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G + GR V + L RE +LE L+A G+ V+KTQ+ + Sbjct: 120 AGGGATIVRHGRLVFDQTGRIATVDDQTLDLSAREVSLLEILLARSGRMVSKTQLVDHLC 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + EAV N +E ++ +LRKKL G + + R LGY ++ Sbjct: 180 E-WGEAVSTNAIEVYVHRLRKKLEPS-GVKII-TVRGLGYCLE 219 >gi|317471402|ref|ZP_07930756.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901153|gb|EFV23113.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 226 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 9/150 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G++VL R +R S +P+I IS + T +D G DD + KP E+ ARV + Sbjct: 60 GDQVL---RELRGFSNIPVIVISAKDIVGTKIDLLKLGADDYITKPFDLGEVEARVLSNL 116 Query: 117 RRLKVSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR S + +T R + D + + G+ L +E IL+ LM + K K + Sbjct: 117 RRQSSSKVKEQTLQYRDLVLSKDAKSVLLGGQDLELTAKEYAILQLLMEHPKKVYTKANL 176 Query: 174 FSAIYGLFDEAV-EENVVESHISKLRKKLR 202 + ++ DE + ++N V++HIS LR KL+ Sbjct: 177 YETVWE--DEYLGDDNAVKTHISNLRNKLK 204 >gi|229049779|ref|ZP_04194336.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229112534|ref|ZP_04242071.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228670914|gb|EEL26221.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228722692|gb|EEL74080.1| DNA-binding response regulator [Bacillus cereus AH676] Length = 220 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 7/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++D S + + +G DD + KP E++ARV AI RR Sbjct: 57 EICRQIRLVKTTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 115 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + E + +F D V+ G+ L +RE +L +L+ N+ +++ I + Sbjct: 116 CNQQKEINFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMILNQ 175 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ V NVV+ +I +RKKL+ + + + GYS+ Sbjct: 176 VWG-YNIVVNPNVVDLYIGYVRKKLKCEKKERYIQTIHGRGYSM 218 >gi|170755698|ref|YP_001779969.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169120910|gb|ACA44746.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 230 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 9/164 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S++P+I IS S + ++G DD + KP + I+A++ + RR Sbjct: 66 RKIRQESKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYA 125 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K+ E ++ + D + E + E + ++E +LEYLM K V + + I+ Sbjct: 126 SKIDEKIVELQGLKFYKDRSEIEFKDERVIITKKEGILLEYLMKKYPKVVNRDFLLEKIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 E VEEN + ++S++RK+L +KLG D +++ R +GY ++ Sbjct: 186 DDI-EFVEENTLNVNVSRIRKRL-HKLGIEDGIETVRGVGYRLN 227 >gi|332531173|ref|ZP_08407086.1| two component transcriptional regulator, winged [Hylemonella gracilis ATCC 19624] gi|332039280|gb|EGI75693.1| two component transcriptional regulator, winged [Hylemonella gracilis ATCC 19624] Length = 239 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 84/163 (51%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ + +RA + +P++ ++ S++ + D G DD + KP +E+ ARV A+ RR Sbjct: 62 LEVLQRLRARGASLPVLILTAADSVEDRVQGLDYGADDYMAKPFSLQELEARVRALTRRG 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++ GP+ G + G + L RE +LE L+ G+ V+K Q+ + Sbjct: 122 LGAASGLIRHGPLVYGQAGHVATIDGRLVELSARELGLLEVLLQRCGRLVSKDQLVDRLC 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E +I +LRKK+ G + + R LGY ++ Sbjct: 182 E-WGEEVSNNAIEVYIHRLRKKIEG--GPIRIATVRGLGYCLE 221 >gi|228477753|ref|ZP_04062382.1| DNA-binding response regulator VncR [Streptococcus salivarius SK126] gi|228250642|gb|EEK09853.1| DNA-binding response regulator VncR [Streptococcus salivarius SK126] Length = 217 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP++ ++ + + L F D + KP + R+ AI+++L+ Sbjct: 60 LEVLKEIRKTSSVPVLMLTAFHDEEYKLTAFGELADGYLEKPFSLSLLKVRIEAIFKKLQ 119 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S R T G RV + + G+ + +E ILEYL+ + GK ++QI A++ Sbjct: 120 PS--RVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWK 177 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL D + + R +GY ++ Sbjct: 178 ETEEIPFDRVIDVYIKELRKKLE----LDCIVTVRNVGYKLE 215 >gi|168205726|ref|ZP_02631731.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170662782|gb|EDT15465.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] Length = 226 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 7/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR SQVP+I ++ S L + G DD V KP + + +LAR+A+I +R S Sbjct: 65 ICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKR-TYS 123 Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ET ++ + EV L + E +IL L+ N+GK V++ I A+ Sbjct: 124 GIEGETEIFNCRGLKYNMSTSEVSFNDEVEELTKNESKILNILIRNKGKIVSRDNIIKAL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +E +++N + ++++LR+K+ + +KR GY Sbjct: 184 WQ-SNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGY 223 >gi|118587757|ref|ZP_01545167.1| two component transcriptional regulator, winged helix family protein [Stappia aggregata IAM 12614] gi|118439379|gb|EAV46010.1| two component transcriptional regulator, winged helix family protein [Stappia aggregata IAM 12614] Length = 228 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 16/162 (9%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R + P++ +S + + +G DD + KP E+LAR+ A+ RR K ++ Sbjct: 69 RQGNHTPVLILSALGQVDDRVKGLKAGGDDYLPKPYAFTELLARIEALARRPKSASQIET 128 Query: 128 TGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 T + R+ R E + PL RE R+LEYLM N G+ V +T + ++ Sbjct: 129 TYTVGDLTLDRMAHSCRRGETE---IPLQPREFRLLEYLMQNAGQVVTRTMLLENVWEYH 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 FD + NV++ HIS+LR K+ GFD + + R GY+I Sbjct: 186 FDP--QTNVIDVHISRLRGKIDK--GFDTPLLHTIRGAGYTI 223 >gi|50956446|gb|AAT90753.1| response regulator [Bifidobacterium animalis subsp. lactis] Length = 245 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 20/143 (13%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI------RVFSDGRDPEVQGEVF 147 G DD V KP E++AR+ AI RR + + E PI + D D G+ Sbjct: 100 GGDDYVTKPFSLEEVVARIRAILRR---TREQVEDDPIIRVGDLEINEDSHDVTRAGQTI 156 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E ++L YLM N G+ ++K QI ++ +D + +VES+IS LRKK+ + Sbjct: 157 DLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ-YDWGGDAAIVESYISYLRKKVDDVTVT 215 Query: 208 DP----------VDSKRFLGYSI 220 D +++KR +GY I Sbjct: 216 DEDGSTHKVTPLIETKRGIGYMI 238 >gi|15602297|ref|NP_245369.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70] gi|12720685|gb|AAK02516.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70] Length = 231 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 115/224 (51%), Gaps = 16/224 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEK 59 ++++D + +++ I+LF ++ +G++ +E ++ QS+ ++ V + L+ G Sbjct: 5 LVVEDESAIRE-MISLF----LTQQGYDIIEAADY-QSAVKKLVEKPQLILLDWMLPGRS 58 Query: 60 VLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 ++ + ++ H +P+I ++ + + ++G DD + KP + +LAR+ A+ Sbjct: 59 GIQFIQFLKKHEDTENIPVIMLTARSEEEDCITGLNTGADDYITKPFSPKILLARIEAML 118 Query: 117 RRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR+ + S N E + + + Q V L E ++L++LM + K + Q+ Sbjct: 119 RRVYEQSQNSIEIDGLLLDQNALRVSYQKNVINLSSTEFKLLKFLMTHPEKVYTREQLLD 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 I+G D VE+ V+S+I +LRK L + GFD + + R GY Sbjct: 179 CIWG-NDIYVEDRTVDSYIRRLRKSL-EQYGFDRYIQTVRGAGY 220 >gi|226944540|ref|YP_002799613.1| Response regulator KdpE [Azotobacter vinelandii DJ] gi|226719467|gb|ACO78638.1| Response regulator KdpE [Azotobacter vinelandii DJ] Length = 232 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 93/209 (44%), Gaps = 21/209 (10%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 +LV GY L + G EG L + AR D+ ++ L K EL +R Sbjct: 24 SLVAHGYRVL--EAGCGREGLT-------LAAEARPDLLVLDLGLPDMDGK--ELLAELR 72 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 SQVP++ +S + D G +D V KP RE+LARV + RR T Sbjct: 73 RDSQVPVLVLSVRAGDGEKVLALDGGANDYVTKPFSIRELLARVRVLLRRPASPGQGPGT 132 Query: 129 ---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 GP+ V D R ++ G L R+E +L L + G+ V + Q+ I+G Sbjct: 133 LNCGPLAVDLDNRRVDLDGREIALTRKEYDVLAMLARHPGRIVTQQQLLRDIWG------ 186 Query: 186 EENVVESH-ISKLRKKLRNKLGFDPVDSK 213 +V +SH + + LR KLG DP D + Sbjct: 187 PTHVEDSHYLRVVVGHLRQKLGDDPADPR 215 >gi|221195593|ref|ZP_03568648.1| response regulator receiver protein [Atopobium rimae ATCC 49626] gi|221184780|gb|EEE17172.1| response regulator receiver protein [Atopobium rimae ATCC 49626] Length = 227 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 14/156 (8%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNN 124 +P++ ++ L ++ D+G DD + KP H E+LAR+ A+ RR L + Sbjct: 73 IPILMLTAKSQLDDKVEGLDNGADDYLTKPFHTAELLARLRALGRRSSNFQDSVLHFGDL 132 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 +T + + G+ L +E RILEY++ + G+ V + Q+ I+G F+ Sbjct: 133 SLDTSTATITCNS-----SGQSVRLSEKELRILEYMIGSHGRIVTRDQLAIKIWG-FESD 186 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E N VE ++S RKKL + + R LGY + Sbjct: 187 AEYNNVEVYMSFTRKKLAFVGSKVEIKAVRGLGYEL 222 >gi|254384115|ref|ZP_04999460.1| two component system response regulator [Streptomyces sp. Mg1] gi|194343005|gb|EDX23971.1| two component system response regulator [Streptomyces sp. Mg1] Length = 255 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 7/164 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ R QVP++ ++ S++ + +G DD V KP E++AR+ + RR + Sbjct: 89 LGQLRREIPQVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRSGAA 148 Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G +R+ D + G+ L E +L YLM N + ++K QI + Sbjct: 149 QAARGGSVLAVGDLRLDEDSHEVTRGGQEVHLTATEFELLRYLMRNPRRVLSKAQILDRV 208 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + +D + NVVE +IS LR+KL G P + ++R GY I Sbjct: 209 WS-YDFGGQANVVELYISYLRRKLEAGTGLPPMIHTRRGAGYLI 251 >gi|53802727|ref|YP_115492.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str. Bath] gi|53756488|gb|AAU90779.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str. Bath] Length = 232 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 4/152 (2%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---NNRA 126 + +PLI ++ + + D G DD V KP RE++AR+ A+ RR + R Sbjct: 75 YGDIPLILVTARGEEEDKIRGLDVGADDYVTKPFSPRELIARIRAVLRRSNRQSKLDGRI 134 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 E G I + +D + E L E R++E+ + + K ++ Q+ ++G +E Sbjct: 135 EIGGILLDTDEHRLSIDDESVNLSPTEYRLMEFFLTHPSKVYSRAQLLDQVWG-RSAYIE 193 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E V+ HI +LRK L D + + R GY Sbjct: 194 ERTVDVHIRRLRKILSEHDREDMIQTVRGFGY 225 >gi|16764586|ref|NP_460201.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56413783|ref|YP_150858.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168239138|ref|ZP_02664196.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194444063|ref|YP_002040487.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448565|ref|YP_002045233.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471531|ref|ZP_03077515.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736162|ref|YP_002114238.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195874180|ref|ZP_02701035.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197251572|ref|YP_002146810.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197261891|ref|ZP_03161965.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197362706|ref|YP_002142343.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244282|ref|YP_002215904.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390596|ref|ZP_03217207.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204930765|ref|ZP_03221638.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205357417|ref|ZP_02347547.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205357746|ref|ZP_02573078.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205358670|ref|ZP_02658171.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205359350|ref|ZP_02669237.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205360059|ref|ZP_02834338.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205360758|ref|ZP_02686229.2| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|207857262|ref|YP_002243913.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224584261|ref|YP_002638059.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|130127|sp|P14146|PHOP_SALTY RecName: Full=Virulence transcriptional regulatory protein phoP gi|73621400|sp|Q5PMJ1|PHOP_SALPA RecName: Full=Virulence transcriptional regulatory protein phoP gi|154264|gb|AAA27187.1| PhoP protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|154266|gb|AAA27188.1| phoP protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|7007369|emb|CAB75591.1| PhoP protein [Salmonella typhimurium] gi|16419749|gb|AAL20160.1| response regulator in two-component regulatory system with PhoQ [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56128040|gb|AAV77546.1| transcriptional regulatory protein PhoP, regulator of virulence determinants [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194402726|gb|ACF62948.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406869|gb|ACF67088.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457895|gb|EDX46734.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711664|gb|ACF90885.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630373|gb|EDX48999.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094183|emb|CAR59687.1| transcriptional regulatory protein PhoP,regulator of virulence determinants [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197215275|gb|ACH52672.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240146|gb|EDY22766.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288154|gb|EDY27541.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938798|gb|ACH76131.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603041|gb|EDZ01587.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204320224|gb|EDZ05428.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205321841|gb|EDZ09680.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329802|gb|EDZ16566.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332740|gb|EDZ19504.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336749|gb|EDZ23513.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341203|gb|EDZ27967.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205347225|gb|EDZ33856.1| transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709065|emb|CAR33398.1| transcriptional regulatory protein PhoP, regulator of virulence determinants [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|219523857|gb|ACL14891.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica] gi|219523864|gb|ACL14894.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica] gi|219523866|gb|ACL14895.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|219523868|gb|ACL14896.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica] gi|224468788|gb|ACN46618.1| transcriptional regulatory protein PhoP, regulator of virulence determinants [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261246443|emb|CBG24253.1| transcriptional regulatory protein PhoP, regulator of virulence determinants [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993010|gb|ACY87895.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157772|emb|CBW17265.1| transcriptional regulatory protein PhoP, regulator of virulence determinants [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912219|dbj|BAJ36193.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086328|emb|CBY96101.1| Response regulator mprA Mycobacterial persistence regulator A [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223849|gb|EFX48912.1| Transcriptional regulatory protein PhoP [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322673635|gb|EFY69737.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322687247|gb|EFY83219.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323129501|gb|ADX16931.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323218886|gb|EGA03397.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323242880|gb|EGA26901.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246796|gb|EGA30766.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323259404|gb|EGA43040.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|326623652|gb|EGE29997.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332988122|gb|AEF07105.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 224 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 5/218 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ ++ + D++ ++ L E L Sbjct: 5 LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 62 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R+ +P++ ++ Q ++ SG DD V KP H E++AR+ A+ RR Sbjct: 63 LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ V EV L E I+E L+ N GK V+K + +Y Sbjct: 123 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E E + ++ + +LRKK++ + D + + R GY Sbjct: 182 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGY 219 >gi|291614947|ref|YP_003525104.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291585059|gb|ADE12717.1| two component transcriptional regulator, winged helix family [Sideroxydans lithotrophicus ES-1] Length = 224 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 4/151 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130 QVP+I ++ + + D G DD + KP E+ ARV A+ RR + N G Sbjct: 73 QVPVIILTARDAEGDRVKGLDLGADDYMIKPFSLPELEARVRALIRRGQCGVNPVYSCGT 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + S GR + G L RE +LE LM G V+K Q+ +Y +EA N + Sbjct: 133 LTFDSVGRRASINGTTLELTTRELSVLEALMLRTGWVVSKEQLLERLYSYAEEA-SNNAI 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E +I +LRKK+ G + + R LGY I+ Sbjct: 192 EVYIHRLRKKI-EPAGV-TIRTIRGLGYVIN 220 >gi|282910995|ref|ZP_06318797.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282324690|gb|EFB55000.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|312438183|gb|ADQ77254.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] Length = 219 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 2/160 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR P+I I+ + D G DD + KP E+LAR+ AI RR + Sbjct: 61 LEICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-Q 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + I + + V G L + E +L L N+ + + QI + ++G Sbjct: 120 PQKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 179 YNSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 218 >gi|217076252|ref|YP_002333968.1| phosphate regulon transcriptional regulatory protein PhoB [Thermosipho africanus TCF52B] gi|217036105|gb|ACJ74627.1| phosphate regulon transcriptional regulatory protein PhoB [Thermosipho africanus TCF52B] Length = 222 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 6/169 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 ++ G + ELP I + +I IS S + + G DD V KP + RE++AR+ Sbjct: 54 MLPDGFSINELPDIKVNFPDLGVIIISARDSDNDKIYGLEIGADDYVAKPFNPREVVARI 113 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + +RR+ +N + GP+ +F + ++ + +E +L L N ++ + Sbjct: 114 KSYFRRVSKNNEYIKYGPLEIFCENYVVKLNNNEVEMTAKEFEVLCLLAKNPDYVFSREK 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I ++ DE + + VV+ HIS +RNKLG + + R GY + Sbjct: 174 ILDTVWE--DEFISDRVVDVHIS----NIRNKLGKSWIKTIRGAGYKFN 216 >gi|190576270|ref|YP_001974115.1| putative two-component system response regulator [Stenotrophomonas maltophilia K279a] gi|190014192|emb|CAQ47836.1| putative two-component system response regulator [Stenotrophomonas maltophilia K279a] Length = 229 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 2/160 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++L R +RA S VP+I ++ L + G DD + KP RE++ARV A+ RR + Sbjct: 68 VDLCRELRASSDVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVMAVLRRYR 127 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + G+ L E R+L L+A G+ A+ ++ +Y L Sbjct: 128 PDPGARANGGLHIDEPAARATWNGKGLDLTPVEYRLLRTLLATPGRIWARDELLDRLY-L 186 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYS 219 V + V+SH+ LR+KL + + +P+ S +GYS Sbjct: 187 DHRVVVDRTVDSHVRNLRRKLADAGMEGEPIRSVYGMGYS 226 >gi|148378274|ref|YP_001252815.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|148287758|emb|CAL81824.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] Length = 235 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 84/159 (52%), Gaps = 6/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR HS+VP+I IS S + ++G DD + KP + +LA++ + RR+ S + Sbjct: 70 IRNHSKVPIIFISARDSDMDQVMAIENGGDDFITKPFSYYVLLAKIKGVLRRVYGSYAKN 129 Query: 127 ETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +T +++ +++ E +G L + E +L YL+ N K V++ + ++ Sbjct: 130 DTDFLKIDDLILYTNKSMLEFKGRKTELSKNEFSLLLYLLKNINKIVSRDTLLEILWSDT 189 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +++N + ++++LRK+L + +++KR GY + Sbjct: 190 D-FIDDNTLSVNVTRLRKRLEEVGITNAIETKRGQGYML 227 >gi|303239291|ref|ZP_07325819.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302593077|gb|EFL62797.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 225 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 12/164 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ L FD G D+ + KP ++ARV A+ RR Sbjct: 66 VCRQIRKSSRVPVIMLTARSDESDELFGFDLGADEYITKPFSPMILVARVQALLRR---- 121 Query: 123 NNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + AE + + GRD + G L +E +L +L N+G +++ QI +++ Sbjct: 122 SGNAEYSTKLFDGLEINEIGRDVYIDGVKLDLSPKEFELLVFLADNKGIALSRDQILNSV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +D + V++HI KLR KL +K F + + R LGY + Sbjct: 182 WD-YDYFGDARTVDTHIKKLRLKLGDKGDF--IQTVRGLGYKFE 222 >gi|302336274|ref|YP_003801481.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301320114|gb|ADK68601.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 228 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 9/167 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R P+I ++ ++ + D+G DD + KP E+LAR+ + + Sbjct: 61 MEVLRRLRRQKDTPVILLTARDAVMDKVAGLDAGADDYITKPFAIEELLARIRVTLKH-R 119 Query: 121 VSNNRAETGPIRVFSDG--RDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S T + + G DP+ VQGE L RE +L LMA++G + + ++ Sbjct: 120 ESGQLPSTSSATLAACGVTLDPDRHEVLVQGEPVALTNREFEVLHALMAHKGVVLTRARL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 S G ++ E N V+ HI+ LR K+ ++ G + + R +GY + Sbjct: 180 ASEALG-YEYVGETNNVDVHIAHLRSKIDDRFGIKLLTTVRGVGYVV 225 >gi|255034266|ref|YP_003084887.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254947022|gb|ACT91722.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 225 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 84/165 (50%), Gaps = 7/165 (4%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +EL R IR+ + P++ ++ + + D+G DD + KP +E+LARV A+ +R Sbjct: 60 IELCREIRSWGDETPILMLTALGTTDDKVTGLDAGADDYLVKPFEFKELLARVRALTKRG 119 Query: 120 KVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ A+ + V D + G L RE +L YL+ N+G+ ++K +I Sbjct: 120 TTVSHTAQVLRFADLEVSLDAKTVYRSGNKINLTAREFNLLVYLIRNQGRVISKVEIAEQ 179 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + FD NV+E +++ LRKK+ + ++ +GY + Sbjct: 180 VWDIGFDTGT--NVIEVYVNYLRKKIDKDYPVKLIHTQFGMGYVL 222 >gi|168186231|ref|ZP_02620866.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] gi|169295719|gb|EDS77852.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] Length = 226 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 69/138 (50%), Gaps = 1/138 (0%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +S++P+I I+ + +D F G DD ++KP + R+ A+ RR V NR Sbjct: 67 IRKNSEIPIIFITAKDTESDIIDGFKLGCDDYISKPFSIEVLKQRIKAVLRRTTVVENRL 126 Query: 127 ET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 I + + D + G L +E R+LE L+ N G+ + + I ++ V Sbjct: 127 FVYEDITIDFNKMDVKKNGITIKLTAKEYRLLELLVKNSGQVLTRRTILEKLWDTDGNFV 186 Query: 186 EENVVESHISKLRKKLRN 203 +EN + +I +LRKK+ + Sbjct: 187 DENALNVNIRRLRKKIED 204 >gi|269138423|ref|YP_003295123.1| two-component transcriptional regulator, winged helix family [Edwardsiella tarda EIB202] gi|267984083|gb|ACY83912.1| two-component transcriptional regulator, winged helix family [Edwardsiella tarda EIB202] gi|304558449|gb|ADM41113.1| Response regulator BaeR [Edwardsiella tarda FL6-60] Length = 243 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 1/158 (0%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S+VP++ ++ L + G DD + KP RE++ARV Sbjct: 67 LMLPGVDGLTLCREIRRTSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 126 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 I RR + + +E P+ + + + L + E R+L+ L G +++ Q Sbjct: 127 KTILRRCGLQDTLSEPAPLLIDESRFQASYRQQPLDLTQAEFRLLKTLATQPGSVLSREQ 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 + + +Y + V + V+SHI LR+KL G +P+ Sbjct: 187 LLNHLYDDY-RVVTDRTVDSHIKNLRRKLEPVEGDEPL 223 >gi|291613481|ref|YP_003523638.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291583593|gb|ADE11251.1| two component transcriptional regulator, winged helix family [Sideroxydans lithotrophicus ES-1] Length = 222 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 110/237 (46%), Gaps = 41/237 (17%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-AIEAFLIG----- 55 ++I+D AL+ D A G +++ W++ D + + EA+ Sbjct: 3 ILVIEDDALLGDAIQAGLKQSGYAVD---------WMKDGVSADQALSTEAYAAAVLDLG 53 Query: 56 ----KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 G +VL+ R+ ++ +P++ ++ +++ + D+G DD + KP E+ AR Sbjct: 54 LPRMSGLEVLQ--RLRSRNTPIPVLILTAMDTVEDRIKGLDAGADDYLVKPFDMGELAAR 111 Query: 112 VAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163 + A+ RR L+V+ E RV + LP +E +L LM N Sbjct: 112 LRALIRRASGKPAPALQVAGVEMEPAAHRVL-------YRNSAIELPAKEFAVLHALMLN 164 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G+ +++TQI +Y + E VE N VE +I LR+KL +L +++ R +GY I Sbjct: 165 AGRVLSRTQIEEQLYA-WGEEVESNAVEVYIHHLRRKLFPEL----IETIRGVGYLI 216 >gi|114569487|ref|YP_756167.1| two component transcriptional regulator [Maricaulis maris MCS10] gi|114339949|gb|ABI65229.1| two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 225 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 K + V L R +A P++ ++ + FD+G DD + KP H E+LAR+ A+ Sbjct: 56 KMDGVTVLERWRQAGRDFPVLILTARDRWSEKVAGFDAGADDYLTKPFHTEELLARMRAL 115 Query: 116 YRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR E G + + + G + G + E R+L YL ++ + +++T++ Sbjct: 116 TRRAAGHTTATIECGGLSIDTRGARVFIDGAPVKVTSHEFRMLSYLAHHQDRVISRTELV 175 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 IY FD + N +E + +LRK K+G D +++ R LGY + Sbjct: 176 EHIYDQDFDR--DSNTIEVFVGRLRK----KIGTDRIETVRGLGYRL 216 >gi|5764628|gb|AAD51348.1|AF173226_5 SmeR [Stenotrophomonas maltophilia] Length = 229 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 2/160 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++L R +RA S VP+I ++ L + G DD + KP RE++ARV A+ RR + Sbjct: 68 VDLCRELRASSDVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVMAVLRRYR 127 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + G+ L E R+L L+A G+ A+ ++ +Y L Sbjct: 128 PDPGARANGGLHIDEPAARATWNGKGLDLTPVEYRLLRTLLATPGRIWARDELLDRLY-L 186 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYS 219 V + V+SH+ LR+KL + + +P+ S +GYS Sbjct: 187 DHRVVVDRTVDSHVRNLRRKLADAGMEGEPIRSVYGMGYS 226 >gi|323438700|gb|EGA96442.1| two-component response regulator [Staphylococcus aureus O11] Length = 219 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 2/160 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR P+I I+ + D G DD + KP E+LAR+ AI RR + Sbjct: 61 LEICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-Q 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + I + + V G L + E +L L N+ + + QI + ++G Sbjct: 120 PQKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 179 YNSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 218 >gi|315644095|ref|ZP_07897265.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315280470|gb|EFU43759.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 229 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 13/162 (8%) Query: 65 RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121 R+IR+HS VP+I +S D+P+ + G DD + KP H ++A++ A RR+ Sbjct: 65 RMIRSHSNVPIIFLSSRDHPT--DMVMSMQLGADDFIQKPFHFDVLIAKIQATLRRVYNY 122 Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S R E G F QG V L + E IL+ LM + + V++ ++ ++ Sbjct: 123 STERTELRAWRGATVEFGKNTISSPQGTV-ELTKNEMYILKILMERKNQIVSREELIKSL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 + + V +N + ++++LRKKL LG DP +++K GY Sbjct: 182 WD-HEHFVSDNTLTVNVNRLRKKLE-PLGLDPYIETKVGQGY 221 >gi|238922349|ref|YP_002935863.1| two-component system, OmpR family, response regulator [Eubacterium eligens ATCC 27750] gi|238874021|gb|ACR73729.1| two-component system, OmpR family, response regulator [Eubacterium eligens ATCC 27750] Length = 223 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 1/142 (0%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R IR S+VP+I ++ + + + D G DD + KP + +E+L+R++A RR K Sbjct: 59 FDICRKIRKSSEVPVIFLTSCDNEEEIVTGLDIGADDYITKPFYTKELLSRISANLRRSK 118 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G I V D QG+ + E I++ L+ N+G+ V + I+ I+ Sbjct: 119 FNAGYIYKKGDIVVDFDRYKISRQGDELNISTNEFDIVKMLIENKGRVVRRDAIYEKIWD 178 Query: 180 LFDEAVEENVVESHISKLRKKL 201 + VE N + +S+++ KL Sbjct: 179 IHGNFVEYNTLTVAMSRIKAKL 200 >gi|153953290|ref|YP_001394055.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219853922|ref|YP_002471044.1| hypothetical protein CKR_0579 [Clostridium kluyveri NBRC 12016] gi|146346171|gb|EDK32707.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219567646|dbj|BAH05630.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 225 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 88/171 (51%), Gaps = 11/171 (6%) Query: 57 GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ LE+ + IR + P+I ++ S+ + ++ D G DD + KP E+LAR+ A+ Sbjct: 56 GKDGLEVLKHIRNRGIRTPVIILTAMDSISSRVEGLDQGADDYLIKPFSKEELLARIRAL 115 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVA 169 RR + + G I++ S DP ++GE+ L +E ++LE L N+ + + Sbjct: 116 GRR---HIDFIQCGTIQLASLTFDP-LRGELQYKENKVKLTSKESQLLELLARNKNQVLT 171 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 K QI ++G + N +E + S LRKKLR +++ R +GY + Sbjct: 172 KDQILDRVWGPDSDVEMNNNIEVYFSYLRKKLRRLNCNVIIETIRGIGYCL 222 >gi|15924405|ref|NP_371939.1| truncated (putative response regulator) [Staphylococcus aureus subsp. aureus Mu50] gi|21283034|ref|NP_646122.1| truncated (putative response regulator ArlR [Staphylococcus aureus subsp. aureus MW2] gi|49483605|ref|YP_040829.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49486256|ref|YP_043477.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651916|ref|YP_186303.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus COL] gi|82751007|ref|YP_416748.1| two-component response regulator [Staphylococcus aureus RF122] gi|87161474|ref|YP_494005.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195145|ref|YP_499946.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267903|ref|YP_001246846.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150393966|ref|YP_001316641.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151221540|ref|YP_001332362.1| two-component response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|156979734|ref|YP_001441993.1| truncated response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|161509580|ref|YP_001575239.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142648|ref|ZP_03567141.1| response regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315262|ref|ZP_04838475.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732052|ref|ZP_04866217.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733338|ref|ZP_04867503.1| response regulator protein [Staphylococcus aureus subsp. aureus TCH130] gi|255006204|ref|ZP_05144805.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425479|ref|ZP_05601904.1| response regulator arlR [Staphylococcus aureus subsp. aureus 55/2053] gi|257428139|ref|ZP_05604537.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257430771|ref|ZP_05607153.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257433530|ref|ZP_05609888.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436371|ref|ZP_05612418.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|257795530|ref|ZP_05644509.1| response regulator protein [Staphylococcus aureus A9781] gi|258413338|ref|ZP_05681614.1| response regulator protein [Staphylococcus aureus A9763] gi|258420555|ref|ZP_05683497.1| two-component system response regulator [Staphylococcus aureus A9719] gi|258422552|ref|ZP_05685460.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|258434673|ref|ZP_05688747.1| response regulator protein [Staphylococcus aureus A9299] gi|258444751|ref|ZP_05693080.1| two-component system response regulator [Staphylococcus aureus A8115] gi|258447414|ref|ZP_05695558.1| two-component system response regulator [Staphylococcus aureus A6300] gi|258449255|ref|ZP_05697358.1| two-component system response regulator [Staphylococcus aureus A6224] gi|258452753|ref|ZP_05700750.1| response regulator arlR [Staphylococcus aureus A5948] gi|258454635|ref|ZP_05702599.1| two-component system response regulator [Staphylococcus aureus A5937] gi|269203038|ref|YP_003282307.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus ED98] gi|282892909|ref|ZP_06301144.1| response regulator arlR [Staphylococcus aureus A8117] gi|282903998|ref|ZP_06311886.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus C160] gi|282905760|ref|ZP_06313615.1| response regulator arlR [Staphylococcus aureus subsp. aureus Btn1260] gi|282908732|ref|ZP_06316550.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282914206|ref|ZP_06321993.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M899] gi|282916682|ref|ZP_06324440.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139] gi|282919128|ref|ZP_06326863.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427] gi|282924311|ref|ZP_06331985.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101] gi|282927663|ref|ZP_06335278.1| response regulator arlR [Staphylococcus aureus A9765] gi|282927940|ref|ZP_06335549.1| response regulator arlR [Staphylococcus aureus A10102] gi|283770486|ref|ZP_06343378.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19] gi|283958180|ref|ZP_06375631.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus A017934/97] gi|284024415|ref|ZP_06378813.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus 132] gi|293501230|ref|ZP_06667081.1| response regulator arlR [Staphylococcus aureus subsp. aureus 58-424] gi|293510193|ref|ZP_06668901.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809] gi|293526786|ref|ZP_06671471.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M1015] gi|294850787|ref|ZP_06791503.1| response regulator arlR [Staphylococcus aureus A9754] gi|295406362|ref|ZP_06816169.1| response regulator arlR [Staphylococcus aureus A8819] gi|295427928|ref|ZP_06820560.1| response regulator arlR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275275|ref|ZP_06857782.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus MR1] gi|297207928|ref|ZP_06924361.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244591|ref|ZP_06928474.1| response regulator arlR [Staphylococcus aureus A8796] gi|297591110|ref|ZP_06949748.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300912012|ref|ZP_07129455.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304381007|ref|ZP_07363663.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|67460127|sp|P0C000|ARLR_STAAM RecName: Full=Response regulator ArlR gi|67460128|sp|P0C001|ARLR_STAAW RecName: Full=Response regulator ArlR gi|67460163|sp|Q5HG04|ARLR_STAAC RecName: Full=Response regulator ArlR gi|67460280|sp|Q6G9E6|ARLR_STAAS RecName: Full=Response regulator ArlR gi|67460282|sp|Q6GGZ3|ARLR_STAAR RecName: Full=Response regulator ArlR gi|67460427|sp|Q9KJN4|ARLR_STAA8 RecName: Full=Response regulator ArlR gi|123485963|sp|Q2FH23|ARLR_STAA3 RecName: Full=Response regulator ArlR gi|123549162|sp|Q2YY03|ARLR_STAAB RecName: Full=Response regulator ArlR gi|9230552|gb|AAF85896.1|AF165314_1 putative response regulator ArlR [Staphylococcus aureus] gi|14247186|dbj|BAB57577.1| truncated (putative response regulator) [Staphylococcus aureus subsp. aureus Mu50] gi|21204473|dbj|BAB95170.1| truncated (putative response regulator ArlR [Staphylococcus aureus subsp. aureus MW2] gi|49241734|emb|CAG40424.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244699|emb|CAG43133.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57286102|gb|AAW38196.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus COL] gi|82656538|emb|CAI80960.1| two-component response regulator [Staphylococcus aureus RF122] gi|87127448|gb|ABD21962.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202703|gb|ABD30513.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740972|gb|ABQ49270.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149946418|gb|ABR52354.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374340|dbj|BAF67600.1| two-component response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|156721869|dbj|BAF78286.1| truncated putative response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|160368389|gb|ABX29360.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724214|gb|EES92943.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728690|gb|EES97419.1| response regulator protein [Staphylococcus aureus subsp. aureus TCH130] gi|257271936|gb|EEV04074.1| response regulator arlR [Staphylococcus aureus subsp. aureus 55/2053] gi|257274980|gb|EEV06467.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257278899|gb|EEV09518.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257281623|gb|EEV11760.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257284653|gb|EEV14773.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|257789502|gb|EEV27842.1| response regulator protein [Staphylococcus aureus A9781] gi|257839902|gb|EEV64370.1| response regulator protein [Staphylococcus aureus A9763] gi|257843503|gb|EEV67910.1| two-component system response regulator [Staphylococcus aureus A9719] gi|257847309|gb|EEV71315.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|257849034|gb|EEV73016.1| response regulator protein [Staphylococcus aureus A9299] gi|257850244|gb|EEV74197.1| two-component system response regulator [Staphylococcus aureus A8115] gi|257853605|gb|EEV76564.1| two-component system response regulator [Staphylococcus aureus A6300] gi|257857243|gb|EEV80141.1| two-component system response regulator [Staphylococcus aureus A6224] gi|257859566|gb|EEV82417.1| response regulator arlR [Staphylococcus aureus A5948] gi|257863018|gb|EEV85782.1| two-component system response regulator [Staphylococcus aureus A5937] gi|262075328|gb|ACY11301.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus ED98] gi|269940910|emb|CBI49294.1| response regulator ArlR [Staphylococcus aureus subsp. aureus TW20] gi|282313698|gb|EFB44091.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101] gi|282316938|gb|EFB47312.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427] gi|282319169|gb|EFB49521.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139] gi|282322274|gb|EFB52598.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M899] gi|282326996|gb|EFB57291.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331052|gb|EFB60566.1| response regulator arlR [Staphylococcus aureus subsp. aureus Btn1260] gi|282590237|gb|EFB95317.1| response regulator arlR [Staphylococcus aureus A10102] gi|282592052|gb|EFB97079.1| response regulator arlR [Staphylococcus aureus A9765] gi|282595616|gb|EFC00580.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus C160] gi|282764906|gb|EFC05031.1| response regulator arlR [Staphylococcus aureus A8117] gi|283460633|gb|EFC07723.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19] gi|283470630|emb|CAQ49841.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus ST398] gi|283790329|gb|EFC29146.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus A017934/97] gi|285817093|gb|ADC37580.1| Putative response regulator ArlR [Staphylococcus aureus 04-02981] gi|290920858|gb|EFD97921.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M1015] gi|291096235|gb|EFE26496.1| response regulator arlR [Staphylococcus aureus subsp. aureus 58-424] gi|291467137|gb|EFF09655.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809] gi|294822362|gb|EFG38815.1| response regulator arlR [Staphylococcus aureus A9754] gi|294968950|gb|EFG44972.1| response regulator arlR [Staphylococcus aureus A8819] gi|295128286|gb|EFG57920.1| response regulator arlR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887502|gb|EFH26402.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178621|gb|EFH37867.1| response regulator arlR [Staphylococcus aureus A8796] gi|297575996|gb|EFH94712.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|298694710|gb|ADI97932.1| two-component response regulator [Staphylococcus aureus subsp. aureus ED133] gi|300886258|gb|EFK81460.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333028|gb|ADL23221.1| response regulator receiver [Staphylococcus aureus subsp. aureus JKD6159] gi|302751245|gb|ADL65422.1| response regulator receiver [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340451|gb|EFM06389.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829810|emb|CBX34652.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129124|gb|EFT85119.1| response regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315195310|gb|EFU25697.1| response regulator [Staphylococcus aureus subsp. aureus CGS00] gi|315195878|gb|EFU26245.1| response regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320139559|gb|EFW31429.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142167|gb|EFW33985.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323444069|gb|EGB01680.1| two-component response regulator [Staphylococcus aureus O46] gi|329314093|gb|AEB88506.1| Response regulator ArlR [Staphylococcus aureus subsp. aureus T0131] gi|329727364|gb|EGG63820.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21172] gi|329730558|gb|EGG66944.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21189] gi|329733445|gb|EGG69777.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21193] Length = 219 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 2/160 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR P+I I+ + D G DD + KP E+LAR+ AI RR + Sbjct: 61 LEICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-Q 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + I + + V G L + E +L L N+ + + QI + ++G Sbjct: 120 PQKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 179 YNSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 218 >gi|326772529|ref|ZP_08231813.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505] gi|326637161|gb|EGE38063.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505] Length = 248 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 9/166 (5%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R H VP++ ++ +++ + +G DD V KP E++AR+ A+ RR Sbjct: 76 LEVMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRS 135 Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S + E G +R+ D + G+ L E +L YLM N + ++K QI Sbjct: 136 GASEEKPASILEVGDLRMDEDSHEVWRGGDEIQLTATEFELLRYLMRNPRRVLSKPQILD 195 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 ++ +D + N+VE +IS LR+K+ G +P + + R +GY + Sbjct: 196 RVWN-YDFGGQANIVELYISYLRRKIDK--GREPMIHTMRGVGYVL 238 >gi|152998427|ref|YP_001343262.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150839351|gb|ABR73327.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 222 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 5/202 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D + D F + G ++ S+E E S D+ ++ L GK G ++ Sbjct: 3 MLLIEDNESLADSIRVYFKNLGHPIDWIGSVEKAEASLSFDDFDLLILDINLPGKSGFQL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ R +++P++ ++ + + D G DD + KP RE+ AR A+YRR + Sbjct: 63 LQSLR--SKGNRIPVLVLTARTEVDDRVSSLDFGADDYLAKPFDFRELAARCRALYRRER 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++N + G + +V G L RE ++LE + N + + K I + +Y Sbjct: 121 GGASNEIQCGNLVYDLAAHSAKVNGITLDLRPRELQLLELFLKNLDRVLTKDDISNRLYS 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 +DEA N +E +++LRK+L Sbjct: 181 -YDEAYTPNAIEQTLTRLRKQL 201 >gi|89893958|ref|YP_517445.1| hypothetical protein DSY1212 [Desulfitobacterium hafniense Y51] gi|89333406|dbj|BAE83001.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 232 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 6/153 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130 P++ ++ ++ ++ D G DD + KP E+LAR+ AI RR + + N G Sbjct: 79 STPILMLTAKGEIEDRIEGLDHGADDYLTKPFAMGELLARIRAITRRKTEFAPNLLTVGN 138 Query: 131 IRVFSDGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 +++ D + E+ GE L +E +++E +M++ + ++ Q I+G +D E N Sbjct: 139 LQL--DRANYELSGEKGSIRLGNKEYQMMEMMMSSPNRLISTEQFMERIWG-YDAEAEIN 195 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VV +IS LRKKL + + R LGY+++ Sbjct: 196 VVWVYISYLRKKLTALGSTVTIKASRGLGYTLE 228 >gi|91975373|ref|YP_568032.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91681829|gb|ABE38131.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB5] Length = 233 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 10/168 (5%) Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +RA S Q+P+I ++ + +G DD + KP E+LARV + R Sbjct: 62 IELCRRLRARSDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121 Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + R T G + + D R G L E R+LE+ + + G+ ++ Q+ Sbjct: 122 R--AAPERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 180 LDGVWG-RDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226 >gi|160947486|ref|ZP_02094653.1| hypothetical protein PEPMIC_01420 [Parvimonas micra ATCC 33270] gi|158446620|gb|EDP23615.1| hypothetical protein PEPMIC_01420 [Parvimonas micra ATCC 33270] Length = 216 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 5/163 (3%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 E+ R R + + P++ ++ L ++ DSG DD + KP +E+LAR+ A+ RR Sbjct: 50 EVARRARKNGIKTPILMLTAKSQLDDKVEGLDSGADDYLTKPFQTKELLARIRALGRRSS 109 Query: 120 KVSNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G + + + + + G+ L +E RILEY+ N G+ + + Q+ I Sbjct: 110 SFQEDILNYGDLTIDKTTAMLNCDTTGQNVRLSEKELRILEYMFNNNGQIMTREQLAVKI 169 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G F+ E N VE ++S RKKL + + R LGY + Sbjct: 170 WG-FESETEYNNVEVYMSFTRKKLTFVGSNVEIKAVRGLGYEL 211 >gi|317056172|ref|YP_004104639.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315448441|gb|ADU22005.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 224 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 113/224 (50%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 +L +D + + +A+ + S++ +N L+ +++ A D ++ + G G Sbjct: 3 LLLAEDEKELSNALVAVLKHNNYSVDAVYNGLDAYDYI-IGAEYDGIVLDIMMPGLDGLT 61 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RR 118 VLE RI Q P++ ++ ++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 62 VLE--RIREKGIQTPVLLLTAKAQVEDRIAGLDTGADDYLTKPFAMGELLARIRAMTRRR 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + S N + G + + + + L +E ++LE LM NR ++ ++ I+ Sbjct: 120 AEFSPNTLKVGNVTLDRERFVISTKNGETKLGNKEFQVLEMLMLNRNILISTERLMEKIW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 G FD E +VV +IS +RKKL + +G D + + R +GY+++ Sbjct: 180 G-FDAEAEISVVWVYISYIRKKL-SAVGADVEIKASRGVGYTLE 221 >gi|257438018|ref|ZP_05613773.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] gi|257199678|gb|EEU97962.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] Length = 236 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127 A Q+P++ I+ S F SG DD + KP++ E++ RV A+ RR ++ N ++ Sbjct: 83 AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G D E LP++E +L L A+ G+ K Q+ ++G EA + Sbjct: 143 IGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRIFTKQQLMDEVWGYETEA-DP 201 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +E HI ++R++ ++ F+ V + R +GY + Sbjct: 202 HTIEVHIGRIRERFKDNPDFEIV-TMRGIGYKV 233 >gi|253681316|ref|ZP_04862114.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum D str. 1873] gi|253562554|gb|EES92005.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum D str. 1873] Length = 235 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 18/176 (10%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 L + IR ++P+I +S + + G DD + KP + E++ARV A RR Sbjct: 62 HLVKKIREKYKIPVIMLSAKSEYSHKILGLELGADDYITKPFNAMEVVARVKAQLRRYYK 121 Query: 120 ------KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 V++N E G +++ + G PL E +I+ YLM + G+ K Sbjct: 122 YHSTGDTVNDNEKCLEYGNLKLNNSTCTLYKNGVEIPLTSTEYKIIFYLMNSCGRVFTKK 181 Query: 172 QIFSAIYGLFDEAV--EENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223 QIF ++ DE ++NV+ HIS LR K+ N +P + + R LGY ++N Sbjct: 182 QIFEYVW---DEPFYGDDNVIMVHISNLRDKIEND-SKNPEYIKTIRGLGYKFNYN 233 >gi|225377469|ref|ZP_03754690.1| hypothetical protein ROSEINA2194_03117 [Roseburia inulinivorans DSM 16841] gi|225210686|gb|EEG93040.1| hypothetical protein ROSEINA2194_03117 [Roseburia inulinivorans DSM 16841] Length = 236 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 3/153 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127 A Q+P++ I+ S F SG DD + KP++ E++ RV A+ RR ++ N ++ Sbjct: 83 AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G D E LP++E +L L A+ G+ K Q+ ++G EA + Sbjct: 143 IGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRIFTKQQLMDEVWGYETEA-DP 201 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +E HI ++R++ ++ F+ V + R +GY + Sbjct: 202 HTIEVHIGRIRERFKDNPDFEIV-TMRGIGYKV 233 >gi|224482624|gb|AAB36584.2| JadR1 [Streptomyces venezuelae ATCC 10712] gi|328886020|emb|CCA59259.1| Phosphate regulon transcriptional regulatory protein PhoB [Streptomyces venezuelae ATCC 10712] Length = 259 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 74/144 (51%), Gaps = 6/144 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR+ VP+I ++ S + +G DD + KP RE++AR+ A+ RR + Sbjct: 100 LEVCRGIRSAGDVPVIAVTSRGSELDRVLGLQAGADDYLVKPYGFRELMARMEAVMRRAR 159 Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + A T GP+ + + R + G+ L R+E +L L ++ + + Q+ + Sbjct: 160 PRPSTARTITRGPLHIDAAARQVTLDGQDVDLTRKEFDLLYLLASHPDTVIPRKQLMQQV 219 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G ++ V++H+S LR KL Sbjct: 220 WG---DSWSRRTVDTHVSSLRNKL 240 >gi|169794902|ref|YP_001712695.1| transcriptional regulator [Acinetobacter baumannii AYE] gi|184159323|ref|YP_001847662.1| response regulator [Acinetobacter baumannii ACICU] gi|213157694|ref|YP_002320492.1| two-component system DNA-binding response regulator [Acinetobacter baumannii AB0057] gi|215482449|ref|YP_002324635.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB307-0294] gi|239502332|ref|ZP_04661642.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB900] gi|260557267|ref|ZP_05829483.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|301346205|ref|ZP_07226946.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB056] gi|301512563|ref|ZP_07237800.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB058] gi|301597175|ref|ZP_07242183.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB059] gi|332854188|ref|ZP_08435208.1| transcriptional regulatory protein QseB [Acinetobacter baumannii 6013150] gi|332866379|ref|ZP_08436976.1| transcriptional regulatory protein QseB [Acinetobacter baumannii 6013113] gi|332872585|ref|ZP_08440554.1| transcriptional regulatory protein QseB [Acinetobacter baumannii 6014059] gi|169147829|emb|CAM85692.1| transcriptional regulator [Acinetobacter baumannii AYE] gi|183210917|gb|ACC58315.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|193078207|gb|ABO13164.2| transcriptional regulator [Acinetobacter baumannii ATCC 17978] gi|213056854|gb|ACJ41756.1| two-component system DNA-binding response regulator [Acinetobacter baumannii AB0057] gi|213988084|gb|ACJ58383.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB307-0294] gi|260409373|gb|EEX02675.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|300915683|gb|ADK46841.1| PmrA [Acinetobacter baumannii] gi|300915687|gb|ADK46844.1| PmrA [Acinetobacter baumannii] gi|300915690|gb|ADK46846.1| PmrA [Acinetobacter baumannii] gi|300915693|gb|ADK46848.1| PmrA [Acinetobacter baumannii] gi|300915696|gb|ADK46850.1| PmrA [Acinetobacter baumannii] gi|300915699|gb|ADK46852.1| PmrA [Acinetobacter baumannii] gi|300915703|gb|ADK46855.1| PmrA [Acinetobacter baumannii] gi|300915707|gb|ADK46858.1| PmrA [Acinetobacter baumannii] gi|300915711|gb|ADK46861.1| PmrA [Acinetobacter baumannii] gi|300915715|gb|ADK46864.1| PmrA [Acinetobacter baumannii] gi|322509234|gb|ADX04688.1| Transcriptional regulator [Acinetobacter baumannii 1656-2] gi|323519263|gb|ADX93644.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332728113|gb|EGJ59501.1| transcriptional regulatory protein QseB [Acinetobacter baumannii 6013150] gi|332734663|gb|EGJ65768.1| transcriptional regulatory protein QseB [Acinetobacter baumannii 6013113] gi|332739271|gb|EGJ70129.1| transcriptional regulatory protein QseB [Acinetobacter baumannii 6014059] Length = 224 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 11/166 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR + P++ IS LQ +D + G DD + KP E+LAR+ A+ RR Sbjct: 61 MQVLKQIRQRAATPVLIISARDQLQNRVDGLNLGADDYLIKPYEFDELLARIHALLRRSG 120 Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V A E+G + + + +G+ L RE IL LM + K +K + Sbjct: 121 VEAQLASQDQLLESGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMTHPNKIFSKANLE 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y FD V N +E ++ LR KLG D + + R LGY + Sbjct: 181 DKLYD-FDSDVTSNTIEVYVHHLRA----KLGKDFIRTIRGLGYRL 221 >gi|149182951|ref|ZP_01861408.1| two-component response regulator [Bacillus sp. SG-1] gi|148849343|gb|EDL63536.1| two-component response regulator [Bacillus sp. SG-1] Length = 223 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 7/148 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE + IR S VP+I ++ + + G DD V KP +E+LAR+ A RR K Sbjct: 60 LEAAQEIRTFSDVPIIMLTAKGNEDDRVTGLKIGADDYVVKPFSPKELLARIEAALRRSK 119 Query: 121 VSNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N T + V G +V G L R+E +L LM N+G+ ++ Q+ Sbjct: 120 GYKNGNLTSQMISHEELTVDLKGHMVQVDGITVNLTRKEFLLLALLMQNQGQVFSREQLL 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR 202 I+G F+ V++HI LR KL+ Sbjct: 180 DQIWG-FESEGTARTVDTHIKTLRLKLK 206 >gi|146309422|ref|YP_001189887.1| two component transcriptional regulator [Pseudomonas mendocina ymp] gi|145577623|gb|ABP87155.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 229 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/213 (26%), Positives = 103/213 (48%), Gaps = 24/213 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 +++DD A +++ IA+ + + G+ LE E Q+ A + D+ ++ L Sbjct: 6 ILIVDDEAPIRE-MIAV----ALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWML--P 58 Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ S +P+I ++ + + G DD + KP RE++AR+ Sbjct: 59 GTSGIELARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR S++ A PI V DP + G+ + E R+L++ M ++ + Sbjct: 119 AVLRRAGPSDSEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ ++G + VEE V+ HI +LRK L Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207 >gi|306833114|ref|ZP_07466244.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|304424688|gb|EFM27824.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] Length = 218 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 53/225 (23%), Positives = 106/225 (47%), Gaps = 18/225 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++G D S E + + +E L+ + +++ + + LE Sbjct: 4 LIVEDEDMIREGISDYLTD--CSYETIQAADGQEALEKFSSYEIALVLLDIQMPKLSGLE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 62 VLAEIRKTSQVPVLMLTAFQDEEYKMGAFASLADGYLEKPFSLSLLKVRVDAIFKRY--- 118 Query: 123 NNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + ++ D R + GE + +E IL+YL+ N + + ++QI A Sbjct: 119 ---YDKGRVFIYKDTRVDFESYSASLAGEEVAINAKELEILDYLVKNERRVLTRSQIIDA 175 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ DE E V++ +I LRKKL D + + R +GY ++ Sbjct: 176 VWKATDEVPFERVIDVYIKGLRKKLH----LDCIHTVRNVGYKLE 216 >gi|304317403|ref|YP_003852548.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778905|gb|ADL69464.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 225 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130 P++ ++ +L + D+G DD + KP E+ AR+ A+ RR + S + + Sbjct: 72 NTPILMLTAKDALDDKVKGLDTGADDYMTKPFELSELTARIRALLRREQPSKSPILKIAD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189 + V + D G++ L +E +LEY+M N G+ + ++QI ++G FD N+ Sbjct: 132 LEVNTLTHDVRRGGKIITLTSKEYSLLEYMMRNSGRVLTRSQIVDHVWGYEFDGL--SNI 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +I LRKK+ + + + R GY + Sbjct: 190 IDVYIRYLRKKIDDNFDIKLIQTIRGSGYCL 220 >gi|225376300|ref|ZP_03753521.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM 16841] gi|225211946|gb|EEG94300.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM 16841] Length = 227 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 77/147 (52%), Gaps = 5/147 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119 ++ R +R S+VP+I ++ L F+ GVD+ ++KP + ++ARV A+ RR L Sbjct: 65 DVCREVRETSKVPIIMLTAKSDESDELTGFELGVDEYISKPFSPKILVARVNALLRRSGL 124 Query: 120 KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N+ E G I++ V G L +E +L+Y M N+G +++ +I + + Sbjct: 125 TAGNDEKFVEAGGIKLDKTAHLVTVDGRPIELSIKEFELLDYFMENQGIALSREKILNNV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 + +D + +++H+ KLR K+ K Sbjct: 185 WN-YDYFGDARTIDTHVKKLRAKIGEK 210 >gi|91201265|emb|CAJ74325.1| strongly similar to two-component response regulator OmpR/PhoB family [Candidatus Kuenenia stuttgartiensis] Length = 224 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 19/193 (9%) Query: 38 LQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 L + D+ ++ L G G++VL+ R H+ P I ++ S+ ++ D G D Sbjct: 39 LATHENYDLIVVDIMLPGINGKEVLKQIRNTGIHT--PAIFLTAIDSVNDKVNGLDIGAD 96 Query: 97 DVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFP 148 D + KP E+LAR+ A RR LK N + +VF D + + E+ P Sbjct: 97 DYIVKPFSFSELLARIRACMRRRTDNYVSNLKTGNVTLDPKTRKVFRDKQ----KIELTP 152 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 + E ILEY M N G+ + +T I I+ E+ NV++ HIS+LR KL Sbjct: 153 I---EFSILEYFMRNPGQILTRTMISEHIWDYNYESF-SNVIDVHISRLRNKLEKDFDKG 208 Query: 209 PVDSKRFLGYSID 221 + + R +GY ++ Sbjct: 209 IIHTVRRVGYVLE 221 >gi|146299380|ref|YP_001193971.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146153798|gb|ABQ04652.1| two component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 228 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 102/218 (46%), Gaps = 20/218 (9%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K GYI ++ +LE F S +++ L D G G +VL+ R + Sbjct: 24 LSKAGYICKIANNCADALEEFGSNDYDAMLLDLGLPD---------GDGFEVLQTIR--K 72 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRA 126 S++ +I ++ L ++ G DD + KP E+ AR+ A+ RR+ NN + Sbjct: 73 TKSKIAVIVLTARGELDDRINGLHLGADDYLTKPFALTELAARLFAVIRRIHGFTLNNLS 132 Query: 127 ETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDE 183 G + +D +V P L ++E I +YL+ N+ + + + Q+ I+G + + Sbjct: 133 IHGFLLQL---QDYKVSFNEVPLSLTKKEFDIFQYLVLNKNRVITRLQLTEHIWGDILEI 189 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + N ++ H+ LRKKL D ++ R +GY I+ Sbjct: 190 NSDSNFIDVHVRNLRKKLDKHTSIDWFETVRNVGYRIN 227 >gi|1575577|gb|AAC44436.1| DNA-binding response regulator [Thermotoga maritima] Length = 239 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 30/216 (13%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY L DG EE L+ + EDV ++ G EL R IR+ Sbjct: 23 LSKEGYEVLKAYDG-----------EEALKIANDEDVDMFIVDIMLPGIDGFELVRKIRS 71 Query: 70 ---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 + P+I +S + + G DD + KP RE+LARV AI+RRL + Sbjct: 72 MEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRLSTATQSK 131 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRI---------LEYLMANRGKRVAKTQIFSAI 177 E P ++ + +D E+ E + + R +++ L +L N GK ++ + + Sbjct: 132 EERPKKIIA--KDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDVLLDKL 189 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +G +D + V+ HI +LR K+ DP + K Sbjct: 190 WG-YDYYGDTRTVDVHIRRLRTKIEE----DPSNPK 220 >gi|116494259|ref|YP_805993.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191637593|ref|YP_001986759.1| Two-component system regulator [Lactobacillus casei BL23] gi|239629641|ref|ZP_04672672.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065765|ref|YP_003787788.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116104409|gb|ABJ69551.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190711895|emb|CAQ65901.1| Two-component system regulator [Lactobacillus casei BL23] gi|239528327|gb|EEQ67328.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438172|gb|ADK17938.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327381643|gb|AEA53119.1| Two component transcriptional regulator, winged helix family [Lactobacillus casei LC2W] gi|327384810|gb|AEA56284.1| Two component transcriptional regulator, winged helix family [Lactobacillus casei BD-II] Length = 231 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 3/133 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P++ ++ +L L F+ G DD + KP H E++ R+ A+ +R ++ G Sbjct: 75 KTPVLILTAKDALTDKLHGFELGGDDYLTKPFHREELIMRLKALLKRTGHFFDDDGLTAG 134 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P V + + + L +E +L YL+ N+ + K QIF ++G FD +V Sbjct: 135 PFVVHVTSHEVLINDQPVALNGKEFDLLVYLLQNQKTIITKDQIFDRLWG-FDSETAVSV 193 Query: 190 VESHISKLRKKLR 202 VE ++S LRKKL+ Sbjct: 194 VEVYMSNLRKKLK 206 >gi|307704977|ref|ZP_07641865.1| response regulator, transcriptional regulatory protein [Streptococcus mitis SK597] gi|307621487|gb|EFO00536.1| response regulator, transcriptional regulatory protein [Streptococcus mitis SK597] Length = 178 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K + N G I + +V+ L Sbjct: 45 FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLSYGDILINLSTNTVKVEDTTVEL 104 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + KTQIF ++G FD +VVE ++SK+RKKL+ + Sbjct: 105 LGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTTFAEN 163 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 164 LQTLRSVGY 172 >gi|299531523|ref|ZP_07044929.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|298720486|gb|EFI61437.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 227 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 11/160 (6%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A S VP++ +S + + G DD + KP RE+LAR A+ RR S T Sbjct: 69 AGSIVPVLVLSARGEEMDKVLGLELGADDYLTKPFSPRELLARTRALLRR---SRQFQPT 125 Query: 129 GP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 P +++ G+ + + L RRE ++L+ L+ G+ +++ + I+GL Sbjct: 126 APAQLARALQIDEQGQRALIHSKALDLTRREYQLLQSLVNAAGRILSRDALLEQIWGLDS 185 Query: 183 EAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 E+ + V++HI LR KLR +L + + + R LGYS++ Sbjct: 186 ESTDRT-VDTHIKTLRAKLRERLPDQELIVTHRGLGYSLN 224 >gi|262275374|ref|ZP_06053184.1| DNA-binding response regulator [Grimontia hollisae CIP 101886] gi|262220619|gb|EEY71934.1| DNA-binding response regulator [Grimontia hollisae CIP 101886] Length = 218 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 82/160 (51%), Gaps = 6/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L ++ R ++ +P++ ++ + + D G DD + KP E++AR+ + RR+ Sbjct: 63 LKQVRRVNATLPIMILTARDEIGDRVKGLDGGADDYMIKPFALEELMARLRVMIRRISGF 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S+ + + V GE L E ++L LM++ G+ ++K Q+ +++G + Sbjct: 123 SDTNISLHGVSLSLANNCVTVNGEAIKLTPNEFKLLSTLMSHAGRVMSKDQLQQSLHG-W 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D+ +N +E HI LRK K+G + + + R +GY I+ Sbjct: 182 DDMASDNAIEVHIHNLRK----KMGGELIKNIRGVGYIIE 217 >gi|256824206|ref|YP_003148166.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687599|gb|ACV05401.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 229 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 102/218 (46%), Gaps = 25/218 (11%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L + G+ DGV EG ++L E + DV+ ++ + + R +R Sbjct: 27 LERQGFTVSTASDGV--EGLDALRRETF-------DVAVVDVMM--PRMDGITFARKVRE 75 Query: 70 HSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 S +P++ ++ D P Q L F GVDD V KP + AR+ A+ RR+ Sbjct: 76 GSDLPIVLLTARDLPHDQ--LAGFQVGVDDYVTKPFDGEVLAARLRAVLRRVDTVPEEPA 133 Query: 128 TGPIRV--FSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 T IRV S RD V GE L E R+LE L+ +RG+ +++ Q+ ++ + Sbjct: 134 TATIRVADLSVNRDGMVVKRAGETISLSATEFRLLEVLLDHRGRVLSRHQLLEMVWDIGS 193 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +VVE + +LR+ K+G + + + R GY + Sbjct: 194 WG-DTHVVEVTVQRLRR----KIGAERIVTVRGAGYKL 226 >gi|229162433|ref|ZP_04290394.1| Two-component response regulator [Bacillus cereus R309803] gi|228620912|gb|EEK77777.1| Two-component response regulator [Bacillus cereus R309803] Length = 225 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 +G +D ++ V++HI KLR KL +K Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209 >gi|255532434|ref|YP_003092806.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255345418|gb|ACU04744.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 231 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 109/226 (48%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D A +++ I+ F +G E +++F L+ + + I L G + Sbjct: 3 ILLIEDEASLRESIISYFTGEGNICEA--AVDFNSALEKISIYNYDCILLDLSLPGGDGM 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R ++ + + ++ IS +L +D + G DD + KP H E+ ARVAAI RR Sbjct: 61 EILRSLKKMNKKEGVLIISARQALDDKIDGLNLGADDYLIKPFHLSELKARVAAIVRRKS 120 Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLP------RRERRILEYLMANRGKRVAKTQI 173 + +N I + + ++ E+ LP ++E +L Y +AN+GK ++K + Sbjct: 121 YNGSNTIVFNEISIDTLAMSVSIKPELARLPGILTLTKKEYDLLVYFIANQGKVISKNAL 180 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G D A + + +HI LRKKL D + S +GY Sbjct: 181 AEHLWGDEIDLADHFDFIYTHIKNLRKKLVEAGCPDYIRSMYGVGY 226 >gi|183601802|ref|ZP_02963172.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|241190700|ref|YP_002968094.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196106|ref|YP_002969661.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219408|gb|EDT90049.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|240249092|gb|ACS46032.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250660|gb|ACS47599.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793689|gb|ADG33224.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis V9] Length = 236 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 20/143 (13%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI------RVFSDGRDPEVQGEVF 147 G DD V KP E++AR+ AI RR + + E PI + D D G+ Sbjct: 91 GGDDYVTKPFSLEEVVARIRAILRR---TREQVEDDPIIRVGDLEINEDSHDVTRAGQTI 147 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E ++L YLM N G+ ++K QI ++ +D + +VES+IS LRKK+ + Sbjct: 148 DLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ-YDWGGDAAIVESYISYLRKKVDDVTVT 206 Query: 208 DP----------VDSKRFLGYSI 220 D +++KR +GY I Sbjct: 207 DEDGSTHKVTPLIETKRGIGYMI 229 >gi|168217888|ref|ZP_02643513.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182380085|gb|EDT77564.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 226 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 13/164 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + R IR SQVP+I ++ S L + G DD V KP + + +LAR+A+I +R Sbjct: 65 ICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKRTYSG 124 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ N R ++ + EV L + E +IL L+ N+GK V++ I Sbjct: 125 IEGETEIFNCRG----LKYNMSTSEVSFNDEVEELTKNESKILNILIRNKGKIVSRDNII 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 A++ +E +++N + ++++LR+K+ + +KR GY Sbjct: 181 KALWQ-SNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGY 223 >gi|330991888|ref|ZP_08315837.1| Cell cycle transcriptional regulator CtrA [Gluconacetobacter sp. SXCC-1] gi|329760909|gb|EGG77404.1| Cell cycle transcriptional regulator CtrA [Gluconacetobacter sp. SXCC-1] Length = 241 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 71/144 (49%), Gaps = 3/144 (2%) Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ RI RA P++ +++ S + F +G DD V +P E+ AR+ A+ RR K Sbjct: 61 EVIRISRAARVPTPVMVLAEEKSATAKVRAFSTGADDYVTRPYESMELTARMQAVIRRSK 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S G + + R+ V G+ L +E ILE L+ +G + K + +YG Sbjct: 121 GYSEPTLRAGHLELCLGSREVSVHGQGVHLTGKEYMILELLLLRKGMVLTKDAFLNHLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRN 203 DE E +++ I KLRKKL+ Sbjct: 181 GMDEP-EMKIIDVFICKLRKKLQG 203 >gi|237729952|ref|ZP_04560433.1| DNA-binding transcriptional regulator QseB [Citrobacter sp. 30_2] gi|226908558|gb|EEH94476.1| DNA-binding transcriptional regulator QseB [Citrobacter sp. 30_2] Length = 227 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 11 ILLIEDDTLIGDGLKTGLSKMGFSIDWFTEGRQGKEALYSAPYDAVILDLTLPGIDGRDI 70 Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R RA+ Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 71 L---REWRANGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRA 127 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + GE L +E +LE LM N+G+ + + I +Y Sbjct: 128 SGQASNTLCHGQVTLDPGALVATAAGEPLSLKPKEFALLELLMRNKGRVLPRKLIEEKLY 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 188 -TWDENVSSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 224 >gi|254524477|ref|ZP_05136532.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219722068|gb|EED40593.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 229 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 P++ ++ ++ + D G DD + KP RE AR + RR + ++ + G Sbjct: 73 TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRARGQASEVVQIGGF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + + GE LP RE R+LE L+ G+ V K +I + ++G FD+ N +E Sbjct: 133 QFDNAAHRVSLDGEPIELPNREYRLLEILVGRLGQVVGKDEIGNGLFG-FDDEAGPNAIE 191 Query: 192 SHISKLRKKL 201 ++ +LRKKL Sbjct: 192 LYVGRLRKKL 201 >gi|139438138|ref|ZP_01771691.1| Hypothetical protein COLAER_00679 [Collinsella aerofaciens ATCC 25986] gi|133776335|gb|EBA40155.1| Hypothetical protein COLAER_00679 [Collinsella aerofaciens ATCC 25986] Length = 220 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 3/159 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R IR P+I ++ + + + + G DD V KP E+ A+VAA RR + Sbjct: 60 FELVRQIRPDFDGPIIFLTARVAEEDAVAGYGLGADDYVRKPFGAAELRAKVAAHLRRER 119 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + A + G +R+ R V E PL E I EYL + G+ +++ QI A+ G Sbjct: 120 RPRSHALSFGEVRIDLGARGLAVGDEAVPLTPTEYAICEYLARHPGQVMSRAQIREAVLG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +A ++ + +S+ R+KL ++ G DP+ + +GY Sbjct: 180 WESDA-DDAAISMQVSRARRKL-SEAGADPIATVWGMGY 216 >gi|111223451|ref|YP_714245.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111150983|emb|CAJ62690.1| putative two-component system response regulator [Frankia alni ACN14a] Length = 207 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 6/133 (4%) Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVF 147 D D+G DD + KP + AR+ A+ RR R + G + + + D V Sbjct: 75 DGLDAGADDYLRKPFSFVVLTARLRALARRGASPRPRLLSHGGLVLDPESGDCSVGAAPV 134 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L RER +LE L+ N G+ ++K ++ +A++GL D E N+VE ++S LR+ K+G Sbjct: 135 SLQPRERALLEVLLRNPGRVLSKDRLLAAVWGL-DGGGEGNLVEVYVSSLRR----KIGS 189 Query: 208 DPVDSKRFLGYSI 220 D + + R LGY + Sbjct: 190 DRIATVRGLGYRL 202 >gi|152976971|ref|YP_001376488.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025723|gb|ABS23493.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 238 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 11/138 (7%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP---------IRVFSDGRDPEVQG 144 G DD + KP RE++ARV AI RR K+ + P +++ + + +G Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRTKLQEEQIPEVPDENSIMISELKILPEFYEAYFRG 155 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RN 203 E L +E +L YL N+G+ + + Q+ SA++ +D A + +V+ HIS LR K+ N Sbjct: 156 EKLELTPKEFELLVYLARNKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEHN 214 Query: 204 KLGFDPVDSKRFLGYSID 221 + + R LGY ++ Sbjct: 215 TKKPAYIKTIRGLGYKLE 232 >gi|219668265|ref|YP_002458700.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538525|gb|ACL20264.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 226 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 3/161 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R IR S VP+I ++ S+ + DSG +D + KP E+LAR+ R Sbjct: 63 EVLRRIRRTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNTAP 122 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + + +D R ++G+ L +RE +L +L+ N+G +++ + ++G Sbjct: 123 LSSTEVLSASGLELDADRRTVTMRGKPVDLTKREFDLLHFLLKNKGIVLSRESLLENVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD A + N V+ +I LR K+ + + R +GY I Sbjct: 183 -FDFAGDTNAVDVYIRFLRGKIDEVFNVKFIHTVRGVGYVI 222 >gi|116252719|ref|YP_768557.1| two component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257367|emb|CAK08462.1| putative two component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 223 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 12/168 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE + +P + R P+I ++ + ++ D G DD + KP E++AR+ A+ Sbjct: 57 GEGLSFIPELRRTGKDTPIIVLTARNEPKERIEGLDLGADDYLGKPFLVEELMARLRAVL 116 Query: 117 RR------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR LK++ R P+ + V LPRRE +L L + + V + Sbjct: 117 RRSPELAELKITAGRMVIDPLHL-----SVTVDAVPLDLPRRELLVLAALARRKEQTVLR 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + +A+Y ++E ++ N +++HIS+LRK+L + + + R +GY Sbjct: 172 STLEAAVYN-YEEEIQSNALDAHISRLRKRLIDVGAGVAIHNIRGVGY 218 >gi|49477181|ref|YP_035526.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328737|gb|AAT59383.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 223 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 63 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 122 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 123 KQEQQEEVQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204 >gi|24114327|ref|NP_708837.1| DNA-binding transcriptional regulator QseB [Shigella flexneri 2a str. 301] gi|30064375|ref|NP_838546.1| DNA-binding transcriptional regulator QseB [Shigella flexneri 2a str. 2457T] gi|24053488|gb|AAN44544.1| putative 2-component transcriptional regulator [Shigella flexneri 2a str. 301] gi|30042632|gb|AAP18356.1| putative 2-component transcriptional regulator [Shigella flexneri 2a str. 2457T] gi|281602412|gb|ADA75396.1| Two component transcriptional regulator, winged helix family precursor [Shigella flexneri 2002017] gi|313648139|gb|EFS12585.1| transcriptional regulatory protein qseB [Shigella flexneri 2a str. 2457T] gi|332998724|gb|EGK18320.1| transcriptional regulatory protein qseB [Shigella flexneri VA-6] gi|332999777|gb|EGK19361.1| transcriptional regulatory protein qseB [Shigella flexneri K-272] gi|333014732|gb|EGK34077.1| transcriptional regulatory protein qseB [Shigella flexneri K-304] gi|333015645|gb|EGK34984.1| transcriptional regulatory protein qseB [Shigella flexneri K-227] Length = 219 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 L---REWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + R + GE L +E +LE LM N G+ + + I +Y Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|289178438|gb|ADC85684.1| Two-component response regulator [Bifidobacterium animalis subsp. lactis BB-12] Length = 250 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 20/143 (13%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI------RVFSDGRDPEVQGEVF 147 G DD V KP E++AR+ AI RR + + E PI + D D G+ Sbjct: 105 GGDDYVTKPFSLEEVVARIRAILRR---TREQVEDDPIIRVGDLEINEDSHDVTRAGQTI 161 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E ++L YLM N G+ ++K QI ++ +D + +VES+IS LRKK+ + Sbjct: 162 DLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ-YDWGGDAAIVESYISYLRKKVDDVTVT 220 Query: 208 DP----------VDSKRFLGYSI 220 D +++KR +GY I Sbjct: 221 DEDGSTHKVTPLIETKRGIGYMI 243 >gi|171057189|ref|YP_001789538.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170774634|gb|ACB32773.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 223 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 4/152 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129 S VP++ ++ S++ + D G DD + KP +E+ ARV A+ RR L ++ G Sbjct: 71 SSVPVLILTAADSIEQRVKGLDFGADDYMAKPFSLQELEARVRALTRRGLGSASAIIRHG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P+ + GR + + L RE +LE L+ G+ V+K Q+ + + E V N Sbjct: 131 PLSFDATGRVAYINDLMIDLSARELSLLEVLLQRAGRLVSKDQLVERLCE-WGEEVSNNA 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E +I +LRKK+ G + + R LGY ++ Sbjct: 190 IEVYIHRLRKKIEQ--GPIRIATVRGLGYCLE 219 >gi|324327498|gb|ADY22758.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 225 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 +G +D ++ V++HI KLR KL +K Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209 >gi|291568591|dbj|BAI90863.1| two-component system response regulator (OmpR subfamily) [Arthrospira platensis NIES-39] Length = 227 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 79/147 (53%), Gaps = 6/147 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ +R+ ++ P++ ++ +L + D+G DD + KP RE+LARV A+ RR Sbjct: 60 LEICAQLRSQQNRTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRRP 119 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V++NR + G ++ + + + L +E ++L+YLM + G+ + T+I Sbjct: 120 PILDSTVTSNRLQFGDLQFDCETQLAYRGQKAIELSEKESQLLQYLMRHPGQLLTHTEIH 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++G D+ NV+ + I LR+K+ Sbjct: 180 QHLWGETDKKPSSNVLAAQIRLLRRKI 206 >gi|238022830|ref|ZP_04603256.1| hypothetical protein GCWU000324_02747 [Kingella oralis ATCC 51147] gi|237866033|gb|EEP67169.1| hypothetical protein GCWU000324_02747 [Kingella oralis ATCC 51147] Length = 222 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 110/221 (49%), Gaps = 11/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +L++D +++ + DDG +++ N+ E + D+ ++ L G+ G +V Sbjct: 3 ILLVEDDSMIAQAVVGSLKDDGYAVDWVNNGNTAETTLAGQNYDIILLDLGLPGQDGIQV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L+ R +R + P++ ++ +Q+ L D G DD + KP E+ AR+ AI RR Sbjct: 63 LQHTRALR--NATPILILTARDDIQSRLAGLDGGADDYIIKPFIMAELKARIRAILRRHA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ G I++ ++G E L ++E +L+ L++ G +++++ I Sbjct: 121 GQASPLLRNGSIQLNPQTYQATLEGQPENILLSQKEFAVLQALISRAGIIHSRSELEDKI 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 YG + E VE N ++ I LRK K+G + + + R +G+ Sbjct: 181 YG-WGEEVESNAIDFLIHSLRK----KIGKEHIKNIRGVGW 216 >gi|229018790|ref|ZP_04175639.1| Two-component response regulator [Bacillus cereus AH1273] gi|229025034|ref|ZP_04181462.1| Two-component response regulator [Bacillus cereus AH1272] gi|228736240|gb|EEL86807.1| Two-component response regulator [Bacillus cereus AH1272] gi|228742540|gb|EEL92691.1| Two-component response regulator [Bacillus cereus AH1273] Length = 225 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVTEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 +G +D ++ V++HI KLR KL +K Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209 >gi|229059731|ref|ZP_04197108.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228719560|gb|EEL71161.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 223 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 10/162 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I ++ S L + G DD + KP + +LARV I RR + Sbjct: 63 ICREIRKTSDVPIIMVTSRDSDVDELISMNLGADDFITKPYNTEILLARVTNILRR---T 119 Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +T I + D Q + L + E +IL YL+ NRG V + + Sbjct: 120 SGNFKTNHILTYRDFNLNLSNATVTYQDKSVELTKNEVKILSYLINNRGNIVKRDSLIET 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ D V+++ + +I++LRKKL + +P+ ++R LGY Sbjct: 180 LWK-SDYFVDDSTLTVNINRLRKKLEDIGIENPITTRRSLGY 220 >gi|229174262|ref|ZP_04301795.1| Two-component response regulator [Bacillus cereus MM3] gi|228609119|gb|EEK66408.1| Two-component response regulator [Bacillus cereus MM3] Length = 225 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIVLTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 +G +D ++ V++HI KLR KL +K Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209 >gi|313204235|ref|YP_004042892.1| two component transcriptional regulator, winged helix family [Paludibacter propionicigenes WB4] gi|312443551|gb|ADQ79907.1| two component transcriptional regulator, winged helix family [Paludibacter propionicigenes WB4] Length = 229 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 80/152 (52%), Gaps = 16/152 (10%) Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++ RI+R + + +P+I ++ S L F+ G DD ++KP RE+LARV A+ RR Sbjct: 63 KMARILRENPKMANIPIIFLTAKDSETDRLTGFNIGADDYISKPFSIREVLARVKAVIRR 122 Query: 119 LKVSNNRAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 N+ E P V S + + ++G P ++E IL+ + N+ + ++ Sbjct: 123 --ADTNKVEAAPTLVLSYEKLEMSLENKKVMLEGVEVPFTKKEFEILKLFLGNKNRVFSR 180 Query: 171 TQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201 ++ S ++ DE V + ++ +I++LRKK+ Sbjct: 181 DEMLSRVWS--DEVIVLDRTIDVNITRLRKKI 210 >gi|306833536|ref|ZP_07466663.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|304424306|gb|EFM27445.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] Length = 224 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K S+N G + Sbjct: 73 TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFSDNNLSYGEL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V + + G+ + +E +L Y + N+ + K+QIF I+G FD +VVE Sbjct: 133 TVTTSTNTTTINGKEVEMLGKEFDLLVYFLQNQNVILPKSQIFDRIWG-FDSDTTISVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + R +GY Sbjct: 192 VYVSKIRKKLKGTTFAKNLQTLRSVGY 218 >gi|296447928|ref|ZP_06889837.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296254565|gb|EFH01683.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 209 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 86/167 (51%), Gaps = 11/167 (6%) Query: 40 SSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 SSAR D++ ++ L G+ + +P++ +A + ++ +S + + D+G DD + Sbjct: 22 SSARYDLAVLDRRL-PDGDGLQVIPKLRQAQPESRVLILSALDDIDQRIGGLDAGGDDYL 80 Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRER 154 KP E++ARV A RR VS T P+ + + DP + G RRE Sbjct: 81 VKPFDLDELMARVRATLRRGGVS----ATPPVAIGALAFDPATRSVSIHGRAATFHRREL 136 Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +LE L+ G+ V + + S I+G FD+ V+ N + + +S+LR +L Sbjct: 137 ALLEALVRRGGRVVERDALLSEIWG-FDDEVQPNALTNLVSRLRARL 182 >gi|295317732|gb|ADF98109.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 232 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR HS+VP+I IS S + ++G DD + KP + +LA++ + RR+ S + Sbjct: 67 IRNHSKVPIIFISARDSDMDQVMAIENGGDDFITKPFSYYVLLAKIKGVLRRVYGSYAKN 126 Query: 127 ET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +T G + ++++ E +G L + E +L YL N K V++ + ++ Sbjct: 127 DTDFFKIGDLILYTNKSILEFKGRKTELSKNEFSLLLYLFKNINKIVSRDTLLEILWSDT 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +++N + ++++LRK+L + +++KR GY + Sbjct: 187 D-FIDDNTLSVNVTRLRKRLEEVGITNAIETKRGQGYML 224 >gi|260596416|ref|YP_003208987.1| DNA-binding response regulator CreB [Cronobacter turicensis z3032] gi|260215593|emb|CBA27829.1| Transcriptional regulatory protein creB [Cronobacter turicensis z3032] Length = 230 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 10/209 (4%) Query: 24 VSLEGFNSLEFEEWLQS--SAREDVSAIEAFLIGKGE-KVLELPR-IIRAHSQVPLIGIS 79 + LEGF FE L + +AR+ + + +G + EL R ++ A+ +P++ ++ Sbjct: 23 MQLEGFTVRTFERGLPALDAARQALPDLVVLDVGLPDISGFELCRQLLAAYPALPVLFLT 82 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFS 135 L + G DD V KP RE+ ARV I RRL+ + A+T G + Sbjct: 83 ARSEEVDKLIGLEIGADDYVAKPFSPREVCARVRTILRRLQKQQSGAQTVVRAGRFELND 142 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 D + PL R E +L+ L+ G+ ++ Q+ ++G +++ + V++HI Sbjct: 143 DAAQIAFCDQPLPLTRYEYLLLKTLLLAPGRVYSRQQLMDRVWGDANDSFDRT-VDTHIK 201 Query: 196 KLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 LR KLR P+++ R LGYS+ N Sbjct: 202 TLRAKLRAVNPEASPINTHRGLGYSLAVN 230 >gi|194466634|ref|ZP_03072621.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|227543945|ref|ZP_03973994.1| response regulator [Lactobacillus reuteri CF48-3A] gi|300909695|ref|ZP_07127156.1| response regulator [Lactobacillus reuteri SD2112] gi|77745285|gb|ABB02543.1| response regulator [Lactobacillus reuteri] gi|194453670|gb|EDX42567.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|227186061|gb|EEI66132.1| response regulator [Lactobacillus reuteri CF48-3A] gi|300893560|gb|EFK86919.1| response regulator [Lactobacillus reuteri SD2112] Length = 228 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 11/204 (5%) Query: 27 EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+++ L+ L+++ +D I L+ +E+ R +R P+I ++ S Sbjct: 24 EGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNGIEVARRVRELKDTPIIIMTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIR-----VFSD 136 + + D G DD + KP E+LARV A+ RR+ + NN+ + + + Sbjct: 84 VIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISIEDGNNKEHQTTVNYKDLTIEKE 143 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 R EV L +RE +L LM N +++ + S ++G +D VE NVV+ +I Sbjct: 144 NRVVRRGDEVINLTKREYELLLILMENINVVMSRKDLLSKVWG-YDSKVETNVVDVYIRY 202 Query: 197 LRKKLRNKLGFDPVDSKRFLGYSI 220 LR K+ + + R GY I Sbjct: 203 LRNKIDRPGEKSYIQTVRGTGYVI 226 >gi|330957821|gb|EGH58081.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 223 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 11/149 (7%) Query: 63 LPRI--------IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 LPR+ +RA S+ +P++ ++ ++ + + G DD + KP E+ ARV Sbjct: 54 LPRMDGFEVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVK 113 Query: 114 AIYRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ RR + R + + + D R + E+ L RE+ +LE L+A G+ ++K Q Sbjct: 114 ALLRRSVLGGERQQCCGVLTYDLDTRRFTLGEELLTLTSREQAVLEALIARPGRVMSKEQ 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + + ++GL DE + +E +I +LRKKL Sbjct: 174 LAAQVFGL-DEEASPDAIEIYIHRLRKKL 201 >gi|308175115|ref|YP_003921820.1| two-component response regulator SpaR [Bacillus amyloliquefaciens DSM 7] gi|307607979|emb|CBI44350.1| two-component response regulator SpaR [Bacillus amyloliquefaciens DSM 7] gi|328913439|gb|AEB65035.1| two-component response regulator SpaR [Bacillus amyloliquefaciens LL3] Length = 220 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +EL R IR P++ ++ ++ + +G DD + KP +E++ARV A Sbjct: 56 GTDGIELCRRIRPLVDSPILFLTAKSDEESIVKGLMTGADDYITKPFGVKELMARVNAHV 115 Query: 117 RRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR K R +G + F D ++ + PL + E +I+E+L ++ + ++ QI Sbjct: 116 RRESREKRQTKRLISGFMFDF-DNKEVWLDDRKLPLTKNEYKIVEFLAQHKNRTFSREQI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +YGL +A+ + E I +RKK + G DP+ + +GY Sbjct: 175 YEEVYGLDGDALYSTITE-FIRTIRKKCKEH-GADPIKTVWGVGY 217 >gi|229822838|ref|ZP_04448908.1| hypothetical protein GCWU000282_00127 [Catonella morbi ATCC 51271] gi|229787651|gb|EEP23765.1| hypothetical protein GCWU000282_00127 [Catonella morbi ATCC 51271] Length = 234 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 76/149 (51%), Gaps = 9/149 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LE+ R IR P+I ++ S+ + D G DD + KP E+LAR+ A++RR+ Sbjct: 66 LEVCRRIRPIKDTPIIIMTARDSVIDRVSGLDQGADDYIVKPFAIEELLARLRALFRRID 125 Query: 120 --KVSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 K N+++ ++ + GR + +V L +RE +L YLM N +++ Sbjct: 126 HNKEEKNQSQQSSVKYRNLVIEKKGRIVKRDDQVIDLTKREYELLLYLMENLNTVMSREV 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + ++G + VE NVV+ +I LR K+ Sbjct: 186 LLDKVWG-YKTEVETNVVDVYIRYLRNKI 213 >gi|153855183|ref|ZP_01996367.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814] gi|149752352|gb|EDM62283.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814] Length = 227 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 76/145 (52%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S+VP+I ++ + L F GVD+ ++KP + ++ARV AI RR V Sbjct: 65 QVCREVRQSSKVPIIMLTARSEERDELQGFALGVDEYISKPFSPKILVARVNAILRRANV 124 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G I + ++ G+ L +E +L Y + N+G +++ +I + ++ Sbjct: 125 LGGGDEIDAGGIVIDKAAHQVKIDGKEIELSFKEFELLSYFVENQGIALSREKILNNVWD 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR KL K Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGEK 208 >gi|291279123|ref|YP_003495958.1| two-component response regulator [Deferribacter desulfuricans SSM1] gi|290753825|dbj|BAI80202.1| two-component response regulator [Deferribacter desulfuricans SSM1] Length = 224 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 80/155 (51%), Gaps = 17/155 (10%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNN 124 P++ IS + + +SG DD ++KP E++ARV AI RR + + N Sbjct: 74 TPVLMISAKGEIDDRIKGLNSGADDYLSKPFSIAELIARVKAILRRTFSQYEQIISIYNL 133 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDE 183 + + +V+ + D EVQ L +E I+EYL++NR K V+K I ++G FD Sbjct: 134 KIDLNTRKVYIN--DSEVQ-----LTSKEYGIIEYLVSNRNKVVSKFAIIEYVWGDEFDP 186 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 N ++ HI +RKK+ +K + + + R +GY Sbjct: 187 FSMSNFLDVHIKNIRKKIGDK-EYKIIQTVRGIGY 220 >gi|229029069|ref|ZP_04185168.1| Two-component response regulator [Bacillus cereus AH1271] gi|228732349|gb|EEL83232.1| Two-component response regulator [Bacillus cereus AH1271] Length = 218 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 58 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 118 KQEQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199 >gi|13476586|ref|NP_108156.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14027348|dbj|BAB53617.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 223 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 13/148 (8%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA ++VP+I ++ SL + + G DD + KP E+ AR+ A RR Sbjct: 60 LEVLRTLRARGNRVPVIVLTANASLDGRVKGLNEGADDYLAKPFQIEELEARIRAQLRR- 118 Query: 120 KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +N+R T P+ D R + GE L RE +LE LM G+ V+K + Sbjct: 119 --ANDR--TAPVVACGDLVFDTNTRLFSLAGEPLALTPREHAVLEQLMVKAGRTVSKAAL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 +AIY F+ + + +E ++ ++RKKL Sbjct: 175 SAAIYD-FETDADPSAIEIYVHRVRKKL 201 >gi|311277391|ref|YP_003939622.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308746586|gb|ADO46338.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 222 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 94/209 (44%), Gaps = 31/209 (14%) Query: 20 GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGI 78 GDD +L GF + + DV ++ L GK G VL+ R R + VP++ + Sbjct: 33 GDD--ALAGFAAQPY----------DVVLLDLGLPGKDGFTVLDGLR--RKDAAVPVLIL 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR 138 + +L L D G DD + KP E+LAR+ A+ RR S I Sbjct: 79 TARDALADRLKGLDGGADDYILKPFEMSELLARIRAVTRRSSGSRTPVMNNGIMTL---- 134 Query: 139 DPEVQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 DP GE F L RE +L LM G +++ + +IYG + E VE N +E Sbjct: 135 DPATHEVCLLASGERFLLSNREYALLAALMLRPGGILSRRDLEDSIYG-WGEEVESNAIE 193 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I LRK KLG + + + R +G+ + Sbjct: 194 FLIHALRK----KLGREAIKNIRGVGWQV 218 >gi|317056826|ref|YP_004105293.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315449095|gb|ADU22659.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 227 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 20/206 (9%) Query: 34 FEEWLQSSAREDVSAI---EAFLIGKGEKV------LELP-----RII---RAHSQVPLI 76 +E L+SS E V A EA + K E+ L LP R+I R+ S+ P+I Sbjct: 18 LKELLESSGYECVQAFDGDEASRLLKNERFDMVLMDLMLPYKNGERLIGELRSRSETPVI 77 Query: 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVF 134 IS ++T LD G DD + KP E+L R+ + RR R E G + + Sbjct: 78 VISAKSMMETKLDVLRLGADDYIIKPFDIDEVLVRIEVVLRRSGAFAARPVLEVGDLSMN 137 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 ++ G L +E +L+ M + K K +++ ++ E+N + H+ Sbjct: 138 TEENTVSANGGQVQLTAKEFMLLKLFMEHPQKVYTKAELYETVWNEV-YYYEDNTINVHV 196 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSI 220 S LR KL+ G D +++ +GY + Sbjct: 197 SNLRSKLKKVSGKDHIETVWGIGYRL 222 >gi|229816849|ref|ZP_04447131.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM 20098] gi|229785865|gb|EEP21979.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM 20098] Length = 262 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 14/140 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNR---AETGPIRVFSDGRDPEVQGEVFPLP 150 G DD V KP E++AR+ AI RR + G + + D D G+ L Sbjct: 119 GGDDYVTKPFSLEEVVARIRAILRRTREQTEEDPIIRVGDLEINEDSHDVTRSGQTIDLS 178 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-------- 202 E ++L YLM N G+ ++K QI ++ +D + +VES+IS LRKK+ Sbjct: 179 PTEYKLLRYLMDNAGRVLSKAQILDHVWQ-YDWGGDAAIVESYISYLRKKVDGIEVTDEN 237 Query: 203 -NKLGFDP-VDSKRFLGYSI 220 +K P +++KR +GY I Sbjct: 238 GDKHKVTPLIETKRGIGYMI 257 >gi|86157318|ref|YP_464103.1| two component transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773829|gb|ABC80666.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-C] Length = 231 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 5/144 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++L R +R S+ P+I +S + + D+G DD + KP E+LARV R + Sbjct: 65 IDLARRLREWSRAPIIVLSARGREEDKVGALDAGADDYLTKPFGVNELLARVRVALRHAQ 124 Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S ++ E GP+RV R+ + G L E R+L L N GK + QI + Sbjct: 125 ASPEQSQVVEAGPLRVDLARREVTLAGAEIRLTPTEYRVLALLARNAGKVLTHRQILREV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G A E + V +++LRKKL Sbjct: 185 WG--PNATEAHYVRVQVAELRKKL 206 >gi|229826761|ref|ZP_04452830.1| hypothetical protein GCWU000182_02137 [Abiotrophia defectiva ATCC 49176] gi|229789631|gb|EEP25745.1| hypothetical protein GCWU000182_02137 [Abiotrophia defectiva ATCC 49176] Length = 223 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 11/160 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125 IR SQ+P+I ++ + + D VDD + KP ++ ++AA+ RR K S+ Sbjct: 67 IRKKSQIPIIILTALNGEKEQIKGLDLQVDDYITKPFSMPVLVRKIAAVLRRASKTSDQE 126 Query: 126 AET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +T I F D V G + L +RE +L L+ NRG+ + + + + I+ + Sbjct: 127 HKTISYDNLILDFDD-YSASVNGISYELTQREFEVLRELLLNRGRILTRQNLLNKIWK-Y 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+++HI LRK KL + + R +GY ID Sbjct: 185 DFYGDERVIDTHIKNLRK----KLNITFIQTIRGVGYKID 220 >gi|227541629|ref|ZP_03971678.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227182597|gb|EEI63569.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 227 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 19/198 (9%) Query: 10 LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+G+ A+ DG +L FN + D+ + L+ G ++ R +R Sbjct: 21 LKKEGFDAIIATDGRTALVEFN------------KNDIDLVLLDLMLPGMSGTDVCRRLR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSN 123 S VP+I ++ + + + G DD V KP RE++AR+ A+ RR V++ Sbjct: 69 QVSTVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLRRGGDSDGSVAD 128 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E G + + + V G+ +P +E +LEYL+ N G+ + + Q+ ++G D Sbjct: 129 QILEGGRVSLDVERHIVTVDGQQVAMPLKEFDLLEYLLRNAGRVLTRGQLIDRVWG-ADY 187 Query: 184 AVEENVVESHISKLRKKL 201 + ++ H+ +LR K+ Sbjct: 188 VGDTKTLDVHVKRLRSKI 205 >gi|326795286|ref|YP_004313106.1| transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326546050|gb|ADZ91270.1| two component transcriptional regulator, winged helix family [Marinomonas mediterranea MMB-1] Length = 219 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 112/226 (49%), Gaps = 16/226 (7%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59 + V+ DD +L G G DG +++ + L + LQS + V G Sbjct: 3 ILVVEDDESL-GSGLCTALGQDGYTVDWLKDGLHASQALQSEHFDLVILDVGLPRMDGFS 61 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 VL+ R+++ S++P++ ++ +++ + D+G DD + KP E+ ARV A+ RR Sbjct: 62 VLKNMRLLK--SEIPVLVLTARDAIEDRITGLDAGADDYLVKPFEVDELKARVRALIRR- 118 Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ RA E IR+ + + ++ + L RRE +L L+++ G + + Sbjct: 119 --ASGRASAHIEYKNIRIEPNAQQVFMEDKEVTLTRREYSLLVELVSHPGHVFTRDVLQQ 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +YG D+ VE N +E HI +RKKL + L V + R +GY +D Sbjct: 177 LLYGWGDD-VESNTLEVHIHHIRKKLFSGL----VRTVRGVGYIVD 217 >gi|322516885|ref|ZP_08069784.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus vestibularis ATCC 49124] gi|322124585|gb|EFX96062.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus vestibularis ATCC 49124] Length = 219 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 5/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125 IR P++ I+ + G DD + KP +E+ ARVAA RR + +++ Sbjct: 66 IRDQVDCPILFITAKTQEVDIVQGLTYGADDYICKPFGVKELQARVAAHLRREHRERHHK 125 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 G + ++ V+ ++ L + E I ++L N+G+ +K QI++ +YG D+ Sbjct: 126 LSLGDFQFDLSAQELYVENQLLDLTKSEYGICQFLAENKGQVFSKEQIYTHLYGYEDKGS 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 V E HI +R KL++ +G +P+++ +GY W+ Sbjct: 186 PTAVAE-HIKNIRAKLKD-VGQNPIETVWGIGYK--WH 219 >gi|165870463|ref|ZP_02215118.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|190568741|ref|ZP_03021645.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|164713958|gb|EDR19480.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|190560157|gb|EDV14138.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] Length = 218 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 58 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 118 KQEQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199 >gi|218778734|ref|YP_002430052.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218760118|gb|ACL02584.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 229 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 7/208 (3%) Query: 2 FVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 F+LI +D + +G A + G + + D+ ++ L GK Sbjct: 6 FILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDG-- 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R+ SQ+P+I ++ L + G DD + KP RE++ARV A+ RR Sbjct: 64 MEVCKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSN 123 Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R GPI + D R+ V G L E IL+ +M+ + ++ ++ Sbjct: 124 TPQEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNELLDLA 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL 205 G E + ++SHI LRKK++ L Sbjct: 184 IGSQFEGYDRT-IDSHIRNLRKKIKKAL 210 >gi|157372144|ref|YP_001480133.1| two component transcriptional regulator [Serratia proteamaculans 568] gi|157323908|gb|ABV43005.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] Length = 219 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 79/151 (52%), Gaps = 6/151 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127 A +P+I ++ +++ ++ DSG DD + KP E+++RV A+ RR+ ++ Sbjct: 66 AGQNIPIIILTARDRIESLVNSLDSGADDFLAKPFALPELISRVKAVNRRMAGFASQTWS 125 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + + + E+ L ++E R+L LM G V KT + +++G D +VE Sbjct: 126 LGNLYLDPINHQVTLDDELLLLSKKEYRLLHELMRCAGTVVRKTALEQSLFGHGD-SVES 184 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 N +E H+ LR+ K+G + + + R +GY Sbjct: 185 NSLEVHMHNLRR----KIGKEKIITVRGIGY 211 >gi|22124591|ref|NP_668014.1| DNA-binding transcriptional regulator BasR [Yersinia pestis KIM 10] gi|45440430|ref|NP_991969.1| DNA-binding transcriptional regulator BasR [Yersinia pestis biovar Microtus str. 91001] gi|51594821|ref|YP_069012.1| DNA-binding transcriptional regulator BasR [Yersinia pseudotuberculosis IP 32953] gi|108806055|ref|YP_649971.1| DNA-binding transcriptional regulator BasR [Yersinia pestis Antiqua] gi|108813411|ref|YP_649178.1| DNA-binding transcriptional regulator BasR [Yersinia pestis Nepal516] gi|145600803|ref|YP_001164879.1| DNA-binding transcriptional regulator BasR [Yersinia pestis Pestoides F] gi|153948791|ref|YP_001402561.1| BasR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|153997284|ref|ZP_02022384.1| two-component system response regulator [Yersinia pestis CA88-4125] gi|162418181|ref|YP_001608275.1| DNA-binding transcriptional regulator BasR [Yersinia pestis Angola] gi|165928165|ref|ZP_02223997.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Orientalis str. F1991016] gi|165937403|ref|ZP_02225966.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Orientalis str. IP275] gi|166011292|ref|ZP_02232190.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Antiqua str. E1979001] gi|166214025|ref|ZP_02240060.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Antiqua str. B42003004] gi|167401228|ref|ZP_02306728.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420653|ref|ZP_02312406.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423155|ref|ZP_02314908.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470191|ref|ZP_02334895.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis FV-1] gi|170025956|ref|YP_001722461.1| DNA-binding transcriptional regulator BasR [Yersinia pseudotuberculosis YPIII] gi|186893830|ref|YP_001870942.1| DNA-binding transcriptional regulator BasR [Yersinia pseudotuberculosis PB1/+] gi|218930521|ref|YP_002348396.1| DNA-binding transcriptional regulator BasR [Yersinia pestis CO92] gi|229839160|ref|ZP_04459319.1| two-component system response regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896649|ref|ZP_04511816.1| two-component system response regulator [Yersinia pestis Pestoides A] gi|229899724|ref|ZP_04514865.1| two-component system response regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229903886|ref|ZP_04518999.1| two-component system response regulator [Yersinia pestis Nepal516] gi|270489125|ref|ZP_06206199.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294505362|ref|YP_003569424.1| two-component system response regulator [Yersinia pestis Z176003] gi|21957394|gb|AAM84265.1|AE013670_2 transcriptional regulatory protein, member of 2-component regulatory system [Yersinia pestis KIM 10] gi|30314186|gb|AAP12460.1| BasR/PmrA-like two-component system response regulator [Yersinia pseudotuberculosis (type O:1b)] gi|45435287|gb|AAS60846.1| two-component system response regulator [Yersinia pestis biovar Microtus str. 91001] gi|51588103|emb|CAH19709.1| two-component system response regulator [Yersinia pseudotuberculosis IP 32953] gi|108777059|gb|ABG19578.1| two-component system response regulator [Yersinia pestis Nepal516] gi|108777968|gb|ABG12026.1| two-component system response regulator [Yersinia pestis Antiqua] gi|115349132|emb|CAL22095.1| two-component system response regulator [Yersinia pestis CO92] gi|145212499|gb|ABP41906.1| two-component system response regulator [Yersinia pestis Pestoides F] gi|149288921|gb|EDM39001.1| two-component system response regulator [Yersinia pestis CA88-4125] gi|152960286|gb|ABS47747.1| transcriptional regulatory protein BasR/PmrA [Yersinia pseudotuberculosis IP 31758] gi|162350996|gb|ABX84944.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis Angola] gi|165914508|gb|EDR33122.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Orientalis str. IP275] gi|165919852|gb|EDR37153.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Orientalis str. F1991016] gi|165989676|gb|EDR41977.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Antiqua str. E1979001] gi|166204820|gb|EDR49300.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Antiqua str. B42003004] gi|166961459|gb|EDR57480.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049253|gb|EDR60661.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057325|gb|EDR67071.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752490|gb|ACA70008.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] gi|186696856|gb|ACC87485.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] gi|229679656|gb|EEO75759.1| two-component system response regulator [Yersinia pestis Nepal516] gi|229687216|gb|EEO79291.1| two-component system response regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229695526|gb|EEO85573.1| two-component system response regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700427|gb|EEO88459.1| two-component system response regulator [Yersinia pestis Pestoides A] gi|262363427|gb|ACY60148.1| two-component system response regulator [Yersinia pestis D106004] gi|262367198|gb|ACY63755.1| two-component system response regulator [Yersinia pestis D182038] gi|270337629|gb|EFA48406.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294355821|gb|ADE66162.1| two-component system response regulator [Yersinia pestis Z176003] gi|320013711|gb|ADV97282.1| two-component system response regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 220 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 105/222 (47%), Gaps = 8/222 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++ DD L + +AL + V + E LQ+S + I + + Sbjct: 3 LLIVEDDELLQRGIAMALTSEGYVCDCAATAAEAHSLLQTSQYSMI--ILDLGLPDQDGT 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L + R H +P++ ++ +L+ +D D+G DD + KP E+LARV A+ RR + Sbjct: 61 LLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLVKPFALAELLARVRALIRRYQ 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+N + + + + +QG+ + +E IL L+ G+ V + + +Y Sbjct: 121 GQSDNLVQQDDLSLNLSTQQVCLQGQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLYT 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D+ + N +E HI LR+ KLG D + + R +GY ++ Sbjct: 181 WNDD-LSSNTLEVHIHNLRR----KLGKDRIRTVRGIGYRLE 217 >gi|300742621|ref|ZP_07072642.1| DNA-binding response regulator TrcR [Rothia dentocariosa M567] gi|300381806|gb|EFJ78368.1| DNA-binding response regulator TrcR [Rothia dentocariosa M567] Length = 247 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 10/183 (5%) Query: 43 REDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101 R DV ++ + G G ++L+ RI + + +VP + ++ S+ ++ +G DD V K Sbjct: 66 RPDVLVLDIMMPGFDGLELLD--RIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTK 123 Query: 102 PIHHREILARVAAIYRRLKVSN-NRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 P E++ R+ + +R V+ + AE G + + D R+ GE L + +L Sbjct: 124 PFSMEEVMIRLHRLVQRSGVAAIDDAELVVGDLVLNQDTREVTRGGEPIALTATQFDLLR 183 Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLG 217 YLM N + V+K+QI ++ +D + N+VE +IS LRKK+ +G +P + + R G Sbjct: 184 YLMENAKRVVSKSQILDNVWN-YDFGGQANIVELYISYLRKKI--DVGREPMIHTVRGAG 240 Query: 218 YSI 220 Y I Sbjct: 241 YVI 243 >gi|241765371|ref|ZP_04763345.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241364901|gb|EER59850.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 235 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 21/141 (14%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKV------SNNRAETGPIRVFSD---GRDPEVQG 144 G DD + KP RE+ AR+ A+ RR V S A +G F D G+ + G Sbjct: 102 GADDYLTKPFSPRELAARIKAVLRRAAVPMGVVASAGSAHSG----FHDDAAGQRISLHG 157 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 + L RRE R+L L+ G+ + + +A +G D + V++HI LR KLR Sbjct: 158 QPLALTRREYRLLACLLHGAGRIHGRETLLAAAWG-NDSESTDRTVDTHIKTLRAKLRE- 215 Query: 205 LGFDP----VDSKRFLGYSID 221 DP + + R +GY +D Sbjct: 216 --LDPTREYISTHRGMGYCLD 234 >gi|125718372|ref|YP_001035505.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|323351211|ref|ZP_08086867.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|125498289|gb|ABN44955.1| Two-component response transcriptional regulator (CheY-like receiver and winged-helix DNA-binding domains), putative [Streptococcus sanguinis SK36] gi|322122435|gb|EFX94146.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|324991492|gb|EGC23425.1| DNA-binding response regulator [Streptococcus sanguinis SK353] gi|324993852|gb|EGC25771.1| DNA-binding response regulator [Streptococcus sanguinis SK405] gi|324994827|gb|EGC26740.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|325687268|gb|EGD29290.1| DNA-binding response regulator [Streptococcus sanguinis SK72] gi|325690802|gb|EGD32803.1| DNA-binding response regulator [Streptococcus sanguinis SK115] gi|325694846|gb|EGD36751.1| DNA-binding response regulator [Streptococcus sanguinis SK150] gi|325696129|gb|EGD38020.1| DNA-binding response regulator [Streptococcus sanguinis SK160] gi|327461010|gb|EGF07343.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] gi|327463116|gb|EGF09437.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327470647|gb|EGF16103.1| DNA-binding response regulator [Streptococcus sanguinis SK330] gi|327474727|gb|EGF20132.1| DNA-binding response regulator [Streptococcus sanguinis SK408] gi|327490284|gb|EGF22072.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] gi|328946751|gb|EGG40889.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] gi|332358683|gb|EGJ36506.1| DNA-binding response regulator [Streptococcus sanguinis SK355] gi|332358954|gb|EGJ36775.1| DNA-binding response regulator [Streptococcus sanguinis SK49] gi|332362447|gb|EGJ40247.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] gi|332367141|gb|EGJ44877.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] Length = 233 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 10/152 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ R IR S VP+I +S S + + G DD V KP +RE+ ARV A+ RR Sbjct: 61 LEVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRAD 120 Query: 119 LKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L V N E+GP +++ D + G+ L RE +L +L + G+ + + Sbjct: 121 LVVENQVEESGPNELTIGELQILPDAFVAKKHGKELELTHREFELLHHLATHIGQVMTRE 180 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ I +LR+K+ + Sbjct: 181 HLLETVWG-YDYFGDVRTVDVTIRRLREKIED 211 >gi|331268289|ref|YP_004394781.1| transcriptional regulatory protein [Clostridium botulinum BKT015925] gi|329124839|gb|AEB74784.1| transcriptional regulatory protein [Clostridium botulinum BKT015925] Length = 236 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 19/176 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 L + IR ++P+I +S + + G DD + KP + E++ARV A RR Sbjct: 63 LVKKIREKYEIPVIMLSAKSEYSDKILGLELGADDYITKPFNAMEVVARVKAQLRRYYKY 122 Query: 121 ------VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 V NN E G +++ + G PL E +I+ YLM + G+ K Sbjct: 123 HSIGDIVENNNEECLEYGSLKLNNSTCTLYKDGVEIPLTSTEYKIIFYLMNSCGRVFTKK 182 Query: 172 QIFSAIYGLFDEAV--EENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223 QIF ++ DE ++N + HIS LR K+ N +P + + R LGY ++N Sbjct: 183 QIFEYVW---DEPFYGDDNAIMVHISNLRDKIEND-SKNPEYIKTIRGLGYKFNFN 234 >gi|295105976|emb|CBL03519.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 233 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 16/166 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 +R S VP++ S S + D+G DD + KP RE+LA V A+ RR + Sbjct: 67 LRRASDVPIVFASARTSETDRIVGLDTGGDDYLPKPYSLRELLAHVNALLRRSRGRAGGE 126 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ GP + G PL +E + YLMA G+ V+K ++ + ++G Sbjct: 127 GADGALAAGPYVLDEAAGSMLKDGAAIPLSPKEFALARYLMAREGEVVSKDRLLAEVWGA 186 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL-----GYSID 221 F E VE V H+S LR K+ + DP F GY D Sbjct: 187 FSE-VEPQTVSVHMSWLRAKVED----DPAHPAHFKTVRGRGYCFD 227 >gi|88857480|ref|ZP_01132123.1| response regulator [Pseudoalteromonas tunicata D2] gi|88820677|gb|EAR30489.1| response regulator [Pseudoalteromonas tunicata D2] Length = 219 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121 L ++ + ++ +P++ ++ + D G DD + KP E+LAR+ + RR+ K Sbjct: 63 LKQVRKKYATLPVLVLTARDGTDDKIKGLDLGADDYLAKPFEVTELLARLRVMTRRIGKF 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +++ E G + + G LPR+E +L+ LM + G+ ++ Q+ + +Y + Sbjct: 123 ASSTLEVGDVALNLAANTVVSAGTGLELPRKEYMVLKALMEHPGRIQSREQLETKLYQ-W 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E V N VE HI LRKKL GF + + R +GY + Sbjct: 182 GEEVSSNAVEVHIHHLRKKLPE--GF--IKTVRGIGYIV 216 >gi|313902686|ref|ZP_07836084.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313466983|gb|EFR62499.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 258 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 10/165 (6%) Query: 46 VSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH 105 V+A+ L+ G E+ +R S VP++ ++ + L F G DD V KP Sbjct: 74 VAAVVLDLMLPGMDGWEVCERLRERSPVPILMLTARGEIHERLHGFHLGADDYVVKPFDP 133 Query: 106 REILARVAAIYRRLKVSNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156 REI+ARV A+ RR + E G + + R V G+ PL R E + Sbjct: 134 REIVARVRALLRRGMPAAGATRPPGAEPALELGRLVIDPGARTVTVDGQPVPLTRTEFDL 193 Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L L +RG+ + + QI + G D +E VV+SH+ LR+KL Sbjct: 194 LYILARHRGQTLGRQQILDRLRG-GDYFGDERVVDSHVRNLREKL 237 >gi|293610947|ref|ZP_06693246.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826599|gb|EFF84965.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 224 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 11/166 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR + P++ IS LQ +D + G DD + KP E+LAR+ A+ RR Sbjct: 61 MQVLKQIRQRAATPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSG 120 Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V A ++G + + + +G+ L RE IL LM++ K +K + Sbjct: 121 VEAQLANHEQLLQSGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLE 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y FD V N +E ++ LR KLG D + + R LGY + Sbjct: 181 DKLYD-FDSDVTSNTIEVYVHHLRA----KLGKDFIRTIRGLGYRL 221 >gi|238918470|ref|YP_002931984.1| transcriptional regulatory protein QseB [Edwardsiella ictaluri 93-146] gi|238868038|gb|ACR67749.1| transcriptional regulatory protein QseB [Edwardsiella ictaluri 93-146] Length = 219 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 19/208 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEK 59 +LI+D L+ DG A G+S GF F + Q D + +A ++ G Sbjct: 4 LLIEDDRLIGDGIKA-----GLSKMGFTVDWFTDGQQGMTALDSAPYDAVILDLSLPGID 58 Query: 60 VLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ R R H++ P++ ++ +L+ + G DD + KP E+ AR+ A+ R Sbjct: 59 GLEILRCWREAGHAE-PVLILTARDALEQRVIGLQQGADDYLCKPFALIEVAARLQALIR 117 Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R ++ +A+T G + + + G PL +E +LE L+ N G+ + ++ I Sbjct: 118 R---NHGQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 +Y +D+ V N VE HI LR+KL Sbjct: 175 EEKLYS-WDDEVSSNAVEVHIHHLRRKL 201 >gi|228913968|ref|ZP_04077592.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926429|ref|ZP_04089501.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932679|ref|ZP_04095553.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944997|ref|ZP_04107358.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090352|ref|ZP_04221595.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|229120938|ref|ZP_04250180.1| Two-component response regulator [Bacillus cereus 95/8201] gi|229172038|ref|ZP_04299603.1| Two-component response regulator [Bacillus cereus MM3] gi|229183591|ref|ZP_04310814.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228599834|gb|EEK57431.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228611381|gb|EEK68638.1| Two-component response regulator [Bacillus cereus MM3] gi|228662598|gb|EEL18196.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228692935|gb|EEL46653.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228814666|gb|EEM60926.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826997|gb|EEM72757.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833253|gb|EEM78818.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845690|gb|EEM90717.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 218 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 58 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 118 KQEQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199 >gi|251797099|ref|YP_003011830.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544725|gb|ACT01744.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 226 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 5/143 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I I+ + L F+ G D+ V KP+ R ++AR A+ +R + + Sbjct: 64 VCRRIREKSDVPIIMITARAEDEDQLMGFELGADEYVTKPLSPRVLVARANALMKRTERT 123 Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R + G + V + V GE+ L +E +L +L+ + GK +++ I +A++ Sbjct: 124 VGREAELLQYGELSVNREAHTVTVTGELINLSPKEYDLLLFLIKHDGKVLSRDYILNAVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G ++ + V++HI KLR KL Sbjct: 184 G-YEYLGDLRTVDTHIKKLRAKL 205 >gi|148654779|ref|YP_001274984.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148566889|gb|ABQ89034.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 227 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 8/136 (5%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV---FSDGRDPEVQGEVF 147 FDSG DD + KP E+LARV A+ RR + + ++ +RV D R + Sbjct: 91 FDSGADDYLVKPFAFEELLARVRALGRRFSLQPD--DSNELRVGDLVLDLRHHTARRGTR 148 Query: 148 P--LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 P L E +LEYLM N G+ +++ QI ++ +D V+ +V+ +I+ LR+KL Sbjct: 149 PLDLTPTEWNLLEYLMRNAGQALSRQQILDHVWS-YDHDVQPQMVDVYIAYLRRKLNASG 207 Query: 206 GFDPVDSKRFLGYSID 221 DP+ + R +GY ++ Sbjct: 208 ERDPIVTVRGVGYRLE 223 >gi|319902736|ref|YP_004162464.1| two component transcriptional regulator, winged helix family [Bacteroides helcogenes P 36-108] gi|319417767|gb|ADV44878.1| two component transcriptional regulator, winged helix family [Bacteroides helcogenes P 36-108] Length = 229 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 79/153 (51%), Gaps = 12/153 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G K+ + + + ++VP+I I+ + T+ F+ G DD ++KP RE+ ARV A+ Sbjct: 61 GFKMASMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVL 120 Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 RR AE P ++ + + GE PL ++E IL L+ N+G+ + Sbjct: 121 RR--TQQAEAEQIPEQIIYQSLVLDIIKKKVSIDGEEAPLTKKEFEILLLLLQNKGRVFS 178 Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201 + I S I+ DE V + ++ +I++LRKK+ Sbjct: 179 REDILSRIWS--DEVYVLDRTIDVNITRLRKKI 209 >gi|270292922|ref|ZP_06199133.1| DNA-binding response regulator CiaR [Streptococcus sp. M143] gi|306829328|ref|ZP_07462518.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|270278901|gb|EFA24747.1| DNA-binding response regulator CiaR [Streptococcus sp. M143] gi|304428414|gb|EFM31504.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] Length = 224 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K + N G + Sbjct: 73 TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGDV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V + +V+ L +E +L Y + N+ + KTQIF ++G FD +VVE Sbjct: 133 VVNLSTNEVKVEDTPVELLGKEFELLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + + R +GY Sbjct: 192 VYVSKVRKKLKGTAFAENLQTLRSVGY 218 >gi|146301142|ref|YP_001195733.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146155560|gb|ABQ06414.1| two-component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 224 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 17/170 (10%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R +RA VP++ ++ + + + +SG DD + KP E+ ARV A++RR Sbjct: 60 IEICRRLRASKNFVPILLLTALGTSENIVTGLNSGADDYLVKPFKFGELDARVNALHRRA 119 Query: 120 KVSNNRAETGPIRVFS------DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKT 171 ET I V + +GR V+ GE L +E ++L YL N G+ V++ Sbjct: 120 -----HQETDKIDVITIGDLEINGRAKTVKRDGESIILTAKEFKLLYYLGKNAGRIVSRD 174 Query: 172 QIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI ++ + FD + NVV+ +I+ LRKK+ + + + LGY I Sbjct: 175 QILDNVWDINFD--MNTNVVDVYITYLRKKVDKPFKTKLIHTMKGLGYVI 222 >gi|73662632|ref|YP_301413.1| response regulator ArlR [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642594|sp|Q49XM7|ARLR_STAS1 RecName: Full=Response regulator ArlR gi|72495147|dbj|BAE18468.1| response regulator ArlR [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 220 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR + P+I I+ + D G DD + KP E+LAR+ A+ RR + Sbjct: 61 LEICRQIRQNQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRR-Q 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + I + D V G+ L + E +L L+ NR + + QI + ++G Sbjct: 120 PQKNLIDIKGIIIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +D VE NVV+ +I LR KL+ G D +++ R +GY + Sbjct: 179 YDTEVETNVVDVYIRYLRNKLK-PFGKDKCIETVRGVGYVV 218 >gi|308187501|ref|YP_003931632.1| transcriptional regulator [Pantoea vagans C9-1] gi|308058011|gb|ADO10183.1| Probable transcriptional regulator [Pantoea vagans C9-1] Length = 235 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 12/153 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G L L R IR HS++P+I ++ L + G DD + KP RE++ARV I Sbjct: 63 GTDGLTLCREIRRHSELPIIMVTARTEEIDRLLGLELGADDYICKPFSPREVVARVKTIL 122 Query: 117 RRLKVSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR+K S ++ + R F+ R+ + L E R+L+ L GK ++ Sbjct: 123 RRVKRSAEEPQSASLLRVDESRFFASWREKPLD-----LTPAEFRLLKTLSLEPGKVFSR 177 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 Q+ + +Y + V + ++SHI LR+KL N Sbjct: 178 EQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLEN 209 >gi|153931668|ref|YP_001382675.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937704|ref|YP_001386226.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|226947497|ref|YP_002802588.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|152927712|gb|ABS33212.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933618|gb|ABS39117.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|226842609|gb|ACO85275.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 258 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 84/159 (52%), Gaps = 6/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR HS+VP+I IS S + ++G DD + KP + +LA++ + RR+ S + Sbjct: 93 IRNHSKVPIIFISARDSDMDQVMAIENGGDDFITKPFSYYVLLAKIKGVLRRVYGSYAKN 152 Query: 127 ETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +T +++ +++ E +G L + E +L YL+ N K V++ + ++ Sbjct: 153 DTDFLKIDDLILYTNKSMLEFKGRKTELSKNEFSLLLYLLKNINKIVSRDTLLEILWSDT 212 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +++N + ++++LRK+L + +++KR GY + Sbjct: 213 D-FIDDNTLSVNVTRLRKRLEEVGITNAIETKRGQGYML 250 >gi|152995826|ref|YP_001340661.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150836750|gb|ABR70726.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 227 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 4/147 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 P++ ++ ++ + D+G DD + KP E+ AR A+ RR + + N E G I Sbjct: 73 TPVLILTARDQIEDRIRLLDAGADDYLTKPFDFGELEARCRALLRRKQGYATNITEHGNI 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V D R + GE+ + RE R+LE + + G+ ++K +I ++ F+E N +E Sbjct: 133 VVNRDSRQVFIDGELTVITNREFRLLEIFLGHLGRVLSKDEITDHLFN-FNETPGPNAIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ +LRKK+ G + + R +GY Sbjct: 192 LYVGRLRKKMGQ--GDLVISTLRGIGY 216 >gi|167745694|ref|ZP_02417821.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662] gi|317472712|ref|ZP_07932026.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167655006|gb|EDR99135.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662] gi|316899790|gb|EFV21790.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 225 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 2/144 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S+VP+I ++ L FD GVD+ ++KP + ++AR+ AI RR + Sbjct: 65 EVVREIRKVSEVPIIMLTAKDQENDELQGFDLGVDEYISKPFSPKILVARIEAILRRTRQ 124 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G I + + + L +E +L Y M N G+ + + I + ++ Sbjct: 125 QDGEVLKAGGIVLDEAAHMVTIDDKSIDLSFKEFELLSYFMKNEGRALTRENILNQVWN- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR K+ +K Sbjct: 184 YDYFGDARTIDTHVKKLRNKMGSK 207 >gi|300088282|ref|YP_003758804.1| winged helix family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528015|gb|ADJ26483.1| two component transcriptional regulator, winged helix family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 229 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 7/151 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ RI+R P++ ++ + + G DD V KP RE++ARV A+ RR ++ Sbjct: 63 EVCRILRKEMNSPILMLTAKADETDKIVGLEIGADDYVTKPFSMRELIARVRAMLRRTQI 122 Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G IRV D + + L +E +L +L N+G ++ Q+ Sbjct: 123 METKPSEDKIIKIGDIRVDIDRHQASLAEVILELKPKEFDLLAFLARNKGLVFSREQLLE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 ++G +D A + V+ HI LR+K+ N G Sbjct: 183 KVWG-YDYAGDTRTVDVHIRWLRQKIENDPG 212 >gi|88797266|ref|ZP_01112856.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297] gi|88780135|gb|EAR11320.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297] Length = 233 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 78/166 (46%), Gaps = 22/166 (13%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP++ ++ + + G DD + KP HRE+LAR+ A+ RR+++ N+ Sbjct: 69 IRESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRRIELDKNQK 128 Query: 127 ET--------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 E RV+SD GE P+ E ++L LM+ GK V K Sbjct: 129 EDDNGILACNGVELNFDTYRVYSD-------GEHIPMTTSEFKVLRVLMSRAGKAVPKED 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ + G A + + ++ H+S +R+KL + + R +GY Sbjct: 182 LYLEVLGREIMAYDRS-IDMHVSNVRRKLGGTTEQSKIQTIRGIGY 226 >gi|313497538|gb|ADR58904.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1] Length = 232 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 87/164 (53%), Gaps = 8/164 (4%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE L + R +R+H Q P++ ++ + D G DD V KP+ R +LAR+ Sbjct: 57 LMLPGEDGLSICRRVRSHYQGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARI 116 Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 A+ RR + +++ + G +R+ + R+ + ++ L E +L L +N G+ + Sbjct: 117 QALLRRSETVDSKRQDLAFGALRIDNRLREAHLGEQLIELTGAEFDLLWLLASNAGRVLT 176 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 + QIF+A+ G+ + ++ ++ ISK+R K+G DP+ + Sbjct: 177 REQIFTALRGVGYDG-QDRSIDIRISKIRP----KIGDDPLQPR 215 >gi|296444506|ref|ZP_06886471.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296258153|gb|EFH05215.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 225 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 10/150 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ + LP + A + ++ I+ L + ++G DD + KP E++AR+ A Sbjct: 57 GDGISLLPEVRAAQPGIRVMMITALDGLTEKISGLEAGADDYLTKPFQGAELIARIRACL 116 Query: 117 RRLKVSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR PIRV + D + V G L RRE +L LM + A+ Sbjct: 117 RR----PGGDVLPPIRVGAVAFDLDSNEVTVAGRTIILTRREMMLLRSLMQRASRVAARE 172 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + IYG+ DE V+ N ++S +S+LRK+L Sbjct: 173 TLIQEIYGV-DEEVQANALDSIVSRLRKQL 201 >gi|82778365|ref|YP_404714.1| DNA-binding transcriptional regulator QseB [Shigella dysenteriae Sd197] gi|309785329|ref|ZP_07679960.1| transcriptional regulatory protein qseB [Shigella dysenteriae 1617] gi|81242513|gb|ABB63223.1| putative 2-component transcriptional regulator [Shigella dysenteriae Sd197] gi|308926449|gb|EFP71925.1| transcriptional regulatory protein qseB [Shigella dysenteriae 1617] Length = 219 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R Q P++ ++ +L+ ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 L---REWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + R + GE L +E +LE LM N G+ + + I +Y Sbjct: 120 NGQTSNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|225026517|ref|ZP_03715709.1| hypothetical protein EUBHAL_00766 [Eubacterium hallii DSM 3353] gi|224956131|gb|EEG37340.1| hypothetical protein EUBHAL_00766 [Eubacterium hallii DSM 3353] Length = 224 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 4/158 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S VP++ +S + + G D+ + KP + A+V A+ RR + + Sbjct: 67 IRKISSVPILFLSSMNDNMNIVMAMNMGGDEFIEKPFDLNVLTAKVQALLRRAYSFQGNV 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N E + + + +GE L + E RIL+ LM N GK VA+ I + ++ DE Sbjct: 127 NVLEHEGMLLNLNDASLSYKGEKISLTKNEFRILQMLMENAGKIVARDDIIARLWE-SDE 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++N + ++++LRKKL N + +K+ +GY +D Sbjct: 186 FIDDNTLTVNVARLRKKLENAGMEGRIKTKKGIGYYLD 223 >gi|188587672|ref|YP_001919525.1| DNA-binding response regulator [Clostridium botulinum E3 str. Alaska E43] gi|188497953|gb|ACD51089.1| DNA-binding response regulator [Clostridium botulinum E3 str. Alaska E43] Length = 227 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 7/163 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RL 119 L I + +I ++ L L F+ G +D + KP E+ AR+ AI + ++ Sbjct: 63 LSYISKKTLNTGVIILTAKEELGDKLKAFNLGANDYLTKPFFMEELKARIIAILKGMGKI 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K SN E +++ + + E L + ++LEYL+ N+G + K QIF I G Sbjct: 123 KKSN-ILEFKNMQIDMKAKTVYINNEELELNEKLYKLLEYLVINKGVLLFKEQIFDNICG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 +A E ++E +IS+LRK+L +K +D + +KR +GY +D Sbjct: 182 YNSDAATE-IIEVYISRLRKQL-SKYNYDRYLVTKRGMGYLLD 222 >gi|163741296|ref|ZP_02148688.1| two-component response regulator [Phaeobacter gallaeciensis 2.10] gi|161385649|gb|EDQ10026.1| two-component response regulator [Phaeobacter gallaeciensis 2.10] Length = 225 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 13/158 (8%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A PLI ++ +++ ++ ++G DD ++KP E+LAR+ A+ RR + AET Sbjct: 69 ARITTPLILLTALGAVEDRVEGLEAGADDYLSKPFAMTELLARITALGRRGRAEA--AET 126 Query: 129 GPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 R+ G D ++ G L +E R+LE LM ++G+ + + ++ + Sbjct: 127 A-TRLSHRGLDLDLLSQTCACNGTTVLLNPKEFRLLEVLMRSKGRIQTRAMLLERVWDIN 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD + +VVE+H+S+LR K+ G + + + R GY Sbjct: 186 FDPST--SVVETHMSRLRNKIEKPFGLEFIKTVRGSGY 221 >gi|330505652|ref|YP_004382521.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] gi|328919938|gb|AEB60769.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] Length = 229 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/213 (26%), Positives = 102/213 (47%), Gaps = 24/213 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 +++DD A +++ IA+ + + G+ LE E Q+ A + D+ ++ L Sbjct: 6 ILIVDDEAPIRE-MIAV----ALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWML--P 58 Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ S +P+I ++ + + G DD + KP RE++AR+ Sbjct: 59 GTSGIELARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR S+ A PI V DP + G+ + E R+L++ M ++ + Sbjct: 119 AVLRRAGPSDGEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ ++G + VEE V+ HI +LRK L Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207 >gi|147676383|ref|YP_001210598.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146272480|dbj|BAF58229.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 232 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 12/163 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR S +P+I ++ Q + FD+G DD V KP E+L RV AI RR Sbjct: 64 FEVCKRIREFSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAILRRSH 123 Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S + GP+ F D + V+G L E ++L +L N GK + + Sbjct: 124 PSEEFPK-GPVYKFGDLVINFAQKRVFVRGREVRLTATEYQVLYHLGCNAGKVITHEDLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217 + ++G + E + + ++IS LRKK+ + DP D K LG Sbjct: 183 TRVWGA-EYRNELHYLRNYISSLRKKIED----DPGDPKYILG 220 >gi|94310594|ref|YP_583804.1| DNA-binding response regulator CreB [Cupriavidus metallidurans CH34] gi|93354446|gb|ABF08535.1| DNA-binding response regulator in two-component regulatory system with CreC [Cupriavidus metallidurans CH34] Length = 232 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 9/168 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ + + G DD V KP RE+ ARV I RR K Sbjct: 64 EVCRSMRTFSDVPVIFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRAKG 123 Query: 122 SNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +++ P+ +DG +G L R E R+L L+ + G+ A++Q+ Sbjct: 124 ASDSPHPSPMAQEEADFVHDTDGARLAYRGRWLDLTRYEYRLLALLVQHPGRIFARSQLM 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 ++ + V+ V++H+ LR KLR DP+ + R +GYS++ Sbjct: 184 DLVWHDSLDTVDRT-VDTHVKTLRAKLREIAPAGDPIRTHRGMGYSLE 230 >gi|23014270|ref|ZP_00054096.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 229 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 72/139 (51%), Gaps = 3/139 (2%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R S +P+I ++ L + G DD + KP RE++AR+ +++RR++ N Sbjct: 68 RELRRFSTIPVIMVTARVEEIDRLLGLEVGADDYICKPFSPREVVARITSLFRRMEWGNP 127 Query: 125 RAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +GP ++ D G + G PL E R++ L ++ G+ + QI Y D Sbjct: 128 VPASGPAQLEIDDAGLRICINGNRLPLTPTEFRLMRLLASSPGRIYTRAQILDLAYH-GD 186 Query: 183 EAVEENVVESHISKLRKKL 201 + V + +++SH+ +RKK+ Sbjct: 187 QDVSDRIIDSHVKNIRKKI 205 >gi|329908873|ref|ZP_08274974.1| two component transcriptional regulator, winged helix family [Oxalobacteraceae bacterium IMCC9480] gi|327546575|gb|EGF31550.1| two component transcriptional regulator, winged helix family [Oxalobacteraceae bacterium IMCC9480] Length = 219 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 74/149 (49%), Gaps = 6/149 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPI 131 P+I ++ + + ++G DD + KP E+ AR+AA+ RR + N + G + Sbjct: 73 TPVIILTARDQISDRIAGLNAGADDYLVKPFDLFELSARIAAVARRYGGNPNPQVHLGEL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 +V R + G V L RE + E L+ G ++K Q+ +Y F +E N +E Sbjct: 133 QVNLSDRSVQRAGVVVELTAREWALFEALLQRPGALLSKPQLEERLYA-FGAEIESNTIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 HIS LRK KLG+ + + R +GY + Sbjct: 192 VHISHLRK----KLGYQVIATVRGVGYRL 216 >gi|307823236|ref|ZP_07653466.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307736011|gb|EFO06858.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 219 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 112/240 (46%), Gaps = 45/240 (18%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV- 60 +L++D ++ +G + +G+ +EG+ +WL + D EA I E + Sbjct: 3 LLLVEDDEILGEGLV-----EGLKMEGYAV----DWLTNGKLAD----EALKINSYELIV 49 Query: 61 --LELPR-----IIRA----HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109 L LP I++A + P++ ++ ++ + DSG DD V KP E+ Sbjct: 50 LDLNLPDMEGLDILKALRTRKDETPVMVLTAKDTVPDRVLGLDSGADDFVIKPFELDEVC 109 Query: 110 ARVAAIYRRLKVSNNRAETGP-IRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMAN 163 AR+ A+ RR N + P I DP E L ++E IL +LM+N Sbjct: 110 ARLRALARR-----NEGRSVPNIEYKGIVLDPASHQVTWNDEKVDLSQKEFEILSFLMSN 164 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221 G+ +++ ++ ++Y +D VE N VE HI LRKKL DP + + R +GY ID Sbjct: 165 IGRVISRARLEESLYS-WDSDVESNTVEVHIHHLRKKL------DPSIIRTVRGVGYIID 217 >gi|229134404|ref|ZP_04263217.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229168317|ref|ZP_04296042.1| Two-component response regulator [Bacillus cereus AH621] gi|228615143|gb|EEK72243.1| Two-component response regulator [Bacillus cereus AH621] gi|228649025|gb|EEL05047.1| Two-component response regulator [Bacillus cereus BDRD-ST196] Length = 225 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 6/147 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 119 LKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + VS N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 +G +D ++ V++HI KLR KL +K Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209 >gi|160898586|ref|YP_001564168.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160364170|gb|ABX35783.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 231 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 13/147 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R R HS P+I ++ L + G DD + KP RE++ARV A+ RR Sbjct: 63 LDILRQFRPHSASPVILLTARVEEMDRLLGLELGADDYICKPFAPREVVARVKAVLRR-- 120 Query: 121 VSNNRAETGP----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS- 175 A GP + + + + G V PL +RE +L+ LM G+ ++ Q+ Sbjct: 121 ----SAGPGPAQQRLTLLPEQGRAMLNGSVLPLTKRELTLLQALMRQPGRLYSRAQLLEL 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR 202 A D V E ++SHI LRKKL+ Sbjct: 177 ACADTLD--VNERAIDSHIKNLRKKLK 201 >gi|161520240|ref|YP_001583667.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353582|ref|YP_001949209.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|160344290|gb|ABX17375.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189337604|dbj|BAG46673.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] Length = 220 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 12/162 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + R +P I I+ + + DSG DD + KP E+LAR+ A+ RR Sbjct: 63 LASLRRRDETLPAIIITARDGVPDRIAGLDSGADDYLVKPFALEELLARIRAVNRR---H 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 RA+T GP+R+ + + PL +E +L LM G +++ Q +Y Sbjct: 120 AGRAQTTLAIGPLRLDPVKHQVWLHDDEVPLSPKEFVLLHELMREPGAVISREQFEERLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E +E N V+ HI LRK KLG D + + R +GY I Sbjct: 180 S-WGEEIESNAVQVHIHNLRK----KLGHDMIRTVRGVGYRI 216 >gi|158320237|ref|YP_001512744.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140436|gb|ABW18748.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 224 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 82/152 (53%), Gaps = 3/152 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRA 126 +++ VP++ ++ +++ F G DD + KPI+ E+L RVAA+ RR + N +R Sbjct: 69 KSNINVPILMVTAKETIEDKKRGFSVGTDDYMVKPINLDEMLLRVAALLRRSNIVNEHRM 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + + +GE LP++E +L L+++ + + Q+ I+G+ D + Sbjct: 129 VIGEVALDYNTLTVSKKGESIVLPKKEFYLLFKLLSHPKQIFTRQQLMDEIWGM-DAETD 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E V+ HI +LR+K + F+ + + R LGY Sbjct: 188 ERTVDVHIKRLREKFGDFSEFEII-TVRGLGY 218 >gi|91785081|ref|YP_560287.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91689035|gb|ABE32235.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 220 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 15/166 (9%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 LDVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 118 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + R+++ IR+ + DP ++G L RE +LE L+A G ++K+Q+ Sbjct: 119 --QSGRSDS-TIRLGNLTLDPASHQVTLEGAPVALSAREFALLEALLARPGAVLSKSQLE 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY I Sbjct: 176 EKMYG-WGEEIGSNTVEVYIHALRK----KLGADLIRNVRGLGYMI 216 >gi|73538992|ref|YP_299359.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Ralstonia eutropha JMP134] gi|72122329|gb|AAZ64515.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Ralstonia eutropha JMP134] Length = 219 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 10/168 (5%) Query: 55 GKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G+G L+ R IR+ S VP+I ++ + + ++G DD + KP E+ ARV+ Sbjct: 57 GRG---LDFLREIRSGGSTVPVIILTALDQVSNRIAGLNAGADDYLVKPFDLSELSARVS 113 Query: 114 AIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ RR + N T G + + + GR L E +LE L+ G V++++ Sbjct: 114 AVSRRYSGNPNPLVTLGELHIDTAGRSVMRGDAHVDLTASEWALLEALIQRPGMIVSRSR 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +Y F+E + N +E H+S+LRK KLG D +++ R LGY + Sbjct: 174 LEDRLYS-FNEEIGSNTIEVHMSRLRK----KLGADVIETLRGLGYRL 216 >gi|311112536|ref|YP_003983758.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931] gi|310944030|gb|ADP40324.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931] Length = 279 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 10/183 (5%) Query: 43 REDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101 R DV ++ + G G ++L+ RI + + +VP + ++ S+ ++ +G DD V K Sbjct: 98 RPDVLVLDIMMPGFDGLELLD--RIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTK 155 Query: 102 PIHHREILARVAAIYRRLKVSN-NRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 P E++ R+ + +R V+ + AE G + + D R+ GE L + +L Sbjct: 156 PFSMEEVMIRLHRLVQRSGVAAIDDAELVVGDLVLNQDTREVTRGGEPIALTATQFDLLR 215 Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLG 217 YLM N + V+K+QI ++ +D + N+VE +IS LRKK+ +G +P + + R G Sbjct: 216 YLMENAKRVVSKSQILDNVWN-YDFGGQANIVELYISYLRKKI--DVGREPMIHTVRGAG 272 Query: 218 YSI 220 Y I Sbjct: 273 YVI 275 >gi|260662240|ref|ZP_05863136.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] gi|260553623|gb|EEX26515.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] Length = 187 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 76/146 (52%), Gaps = 3/146 (2%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIR 132 P++ ++ ++ F SG DD + KP+ E+ RVAA+ RR K+++ R T G Sbjct: 37 PVLMLTAKTTITDKTTGFTSGADDYLTKPVDLAELKLRVAALLRRAKINSARQITIGQTI 96 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + + + G L ++E +L L++ K + Q+ I+G+ D A E+ V++ Sbjct: 97 LNEENFTLTINGHSTTLAKKEFLLLFTLLSYPNKIFTQAQLLDQIWGI-DSASTEDTVKT 155 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218 H+SK+RK L++ + + R LGY Sbjct: 156 HVSKVRKLLKDSNDV-KITTIRGLGY 180 >gi|154496626|ref|ZP_02035322.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC 29799] gi|150274259|gb|EDN01350.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC 29799] Length = 224 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 18/206 (8%) Query: 27 EGFNSLEFEEWLQSS--AREDVSAIEAF-LIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 +GF LE E+ + ARE + ++ G EL R +R +S++P++ +S Sbjct: 25 DGFRVLEAEDGTTALVLAREHAPDMAILDIMMPGMNGFELTRALRKYSEIPILILSAKSQ 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS-DGRDPEV 142 + + G DD + KP + EI+ARV A RR + N ++ +R S D ++ Sbjct: 85 DNDKILGLNLGADDYIAKPFNPVEIVARVKAQLRR--AARNSSDVITVRELSLDTAAFQL 142 Query: 143 --QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 G PL E +IL LM + G+ K Q++ G + E ++N + HISKLR+K Sbjct: 143 TKSGVPIPLTPMEYKILALLMRSPGRIFTKIQLYEGAIGNYFEG-DDNTMMVHISKLREK 201 Query: 201 LRNKLGFDPVDSK-----RFLGYSID 221 + + DP + + R LGY ++ Sbjct: 202 IED----DPRNPRYIITVRGLGYKLE 223 >gi|296156679|ref|ZP_06839517.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295893278|gb|EFG73058.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 223 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 6/150 (4%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPIR 132 P++ ++ + S++ + D G DD + KP E+ AR A+ RR A+ G + Sbjct: 74 PVLMLTAHGSVEERVRGLDLGADDYLAKPFALTELEARARALLRRSHGQEPLHAQCGTLL 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 S R + GE L RER +LE L+ G+ + K + I+GL DE+V + +E Sbjct: 134 YDSVDRGFTLDGEALALTPRERSVLEVLILRNGRAINKDTLSEKIFGL-DESVNADAIEI 192 Query: 193 HISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 ++ +LR+KL R+ +G + + R LGY ++ Sbjct: 193 YVHRLRRKLERSSVG---IVTLRGLGYLLE 219 >gi|302873321|ref|YP_003841954.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307688511|ref|ZP_07630957.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302576178|gb|ADL50190.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 226 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 6/145 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ + +R S P+I IS + T +D G DD + KP E+LAR+ A RR Sbjct: 62 EILKEMRNFSDTPVIVISAKDMVGTKIDILKLGADDYITKPFDLGEVLARIEATLRRCHK 121 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +V N+ + I + + + V G L +E ILE L+ +GK K ++ +I+ Sbjct: 122 QVHINKVIKYKDIVLDDNSKHVSVNGVEIELTAKEYMILEMLIKYQGKVFTKANLYESIW 181 Query: 179 GLFDEAV-EENVVESHISKLRKKLR 202 +E + ++N V++H+S LR KL+ Sbjct: 182 K--EEYLGDDNAVKTHVSNLRSKLQ 204 >gi|228909410|ref|ZP_04073235.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228850187|gb|EEM95016.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 225 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 +G +D ++ V++HI KLR KL +K Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209 >gi|146279695|ref|YP_001169853.1| histidine kinase A domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145557936|gb|ABP72548.1| histidine kinase A domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 220 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 101/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A++ DG A G S E SLE + R D ++ ++ G + Sbjct: 3 ILVVEDDAVLSDGLRAGLRIAGFSPETVASLEDARAALLAGRFDAMVLD-LMLPDGSGLD 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 L + A VP++ ++ L + D G DD + KP E+ AR+ A+ RR Sbjct: 62 LLVEVRSAGLAVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPAA 121 Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +S R A G + G V PL RE +L LM ++K Q+ +YG Sbjct: 122 LSETRPAWNGVTLDLAALVASRADGPV-PLSPREFSVLRALMDRPRAVLSKAQLEEQLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E +E N VE HI KLR+KLG D +++ R GY + Sbjct: 181 -WQEEIESNAVEVHI----HKLRSKLGHDFIETVRGAGYRL 216 >gi|30263549|ref|NP_845926.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42782670|ref|NP_979917.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47528946|ref|YP_020295.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|47567882|ref|ZP_00238589.1| two-component response regulator [Bacillus cereus G9241] gi|49186400|ref|YP_029652.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49477754|ref|YP_037680.1| transcriptional regulatory protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141934|ref|YP_084893.1| transcriptional regulatory protein [Bacillus cereus E33L] gi|118478844|ref|YP_895995.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al Hakam] gi|165870959|ref|ZP_02215610.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167636464|ref|ZP_02394762.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640572|ref|ZP_02398834.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688455|ref|ZP_02879663.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708146|ref|ZP_02898593.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177652476|ref|ZP_02934943.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190564567|ref|ZP_03017488.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196034040|ref|ZP_03101450.1| DNA-binding response regulator [Bacillus cereus W] gi|196038467|ref|ZP_03105776.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196044699|ref|ZP_03111934.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206975347|ref|ZP_03236260.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217961002|ref|YP_002339570.1| DNA-binding response regulator [Bacillus cereus AH187] gi|218904728|ref|YP_002452562.1| DNA-binding response regulator [Bacillus cereus AH820] gi|222097054|ref|YP_002531111.1| transcriptional regulatory protein [Bacillus cereus Q1] gi|225865582|ref|YP_002750960.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227813568|ref|YP_002813577.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228916230|ref|ZP_04079800.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928652|ref|ZP_04091688.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228934872|ref|ZP_04097703.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947215|ref|ZP_04109509.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228986689|ref|ZP_04146819.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229123117|ref|ZP_04252324.1| Two-component response regulator [Bacillus cereus 95/8201] gi|229140213|ref|ZP_04268771.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|229157173|ref|ZP_04285253.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|229185835|ref|ZP_04313008.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|229197708|ref|ZP_04324428.1| Two-component response regulator [Bacillus cereus m1293] gi|229604587|ref|YP_002867793.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686167|ref|ZP_05150026.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254726066|ref|ZP_05187848.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254738640|ref|ZP_05196343.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254744802|ref|ZP_05202480.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254752958|ref|ZP_05204994.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254759230|ref|ZP_05211256.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|301055087|ref|YP_003793298.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30258184|gb|AAP27412.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42738596|gb|AAS42525.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47504094|gb|AAT32770.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|47555360|gb|EAL13704.1| two-component response regulator [Bacillus cereus G9241] gi|49180327|gb|AAT55703.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49329310|gb|AAT59956.1| transcriptional regulatory protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975403|gb|AAU16953.1| transcriptional regulatory protein [Bacillus cereus E33L] gi|118418069|gb|ABK86488.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al Hakam] gi|164713170|gb|EDR18696.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511440|gb|EDR86824.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528123|gb|EDR90915.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126954|gb|EDS95834.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667625|gb|EDT18380.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082150|gb|EDT67217.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190563884|gb|EDV17848.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195993114|gb|EDX57072.1| DNA-binding response regulator [Bacillus cereus W] gi|196024734|gb|EDX63406.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196030875|gb|EDX69473.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|206746249|gb|EDZ57643.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065228|gb|ACJ79478.1| DNA-binding response regulator [Bacillus cereus AH187] gi|218538759|gb|ACK91157.1| DNA-binding response regulator [Bacillus cereus AH820] gi|221241112|gb|ACM13822.1| transcriptional regulatory protein [Bacillus cereus Q1] gi|225789063|gb|ACO29280.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227007659|gb|ACP17402.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228585785|gb|EEK43883.1| Two-component response regulator [Bacillus cereus m1293] gi|228597547|gb|EEK55194.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228626237|gb|EEK82984.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228643299|gb|EEK99572.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|228660411|gb|EEL16044.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228773020|gb|EEM21456.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812462|gb|EEM58789.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824772|gb|EEM70573.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830971|gb|EEM76572.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843428|gb|EEM88506.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268995|gb|ACQ50632.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|300377256|gb|ADK06160.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 225 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 +G +D ++ V++HI KLR KL +K Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209 >gi|30021702|ref|NP_833333.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|75760689|ref|ZP_00740714.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206969120|ref|ZP_03230075.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218235232|ref|YP_002368413.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218898694|ref|YP_002447105.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228902100|ref|ZP_04066264.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228922307|ref|ZP_04085614.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228940685|ref|ZP_04103248.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228953868|ref|ZP_04115907.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228959784|ref|ZP_04121459.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228966495|ref|ZP_04127548.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228973603|ref|ZP_04134185.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980161|ref|ZP_04140475.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|229047283|ref|ZP_04192882.1| Two-component response regulator [Bacillus cereus AH676] gi|229071099|ref|ZP_04204325.1| Two-component response regulator [Bacillus cereus F65185] gi|229075494|ref|ZP_04208483.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|229080805|ref|ZP_04213323.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|229098043|ref|ZP_04228993.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229104130|ref|ZP_04234804.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|229111024|ref|ZP_04240583.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229117061|ref|ZP_04246443.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|229128872|ref|ZP_04257848.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|229146167|ref|ZP_04274542.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|229151795|ref|ZP_04279994.1| Two-component response regulator [Bacillus cereus m1550] gi|229179886|ref|ZP_04307232.1| Two-component response regulator [Bacillus cereus 172560W] gi|229191685|ref|ZP_04318664.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|296504106|ref|YP_003665806.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|29897257|gb|AAP10534.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|74491807|gb|EAO54998.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206736161|gb|EDZ53319.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218163189|gb|ACK63181.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218541903|gb|ACK94297.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228591847|gb|EEK49687.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228603567|gb|EEK61042.1| Two-component response regulator [Bacillus cereus 172560W] gi|228631608|gb|EEK88238.1| Two-component response regulator [Bacillus cereus m1550] gi|228637226|gb|EEK93681.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228654577|gb|EEL10439.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228666465|gb|EEL21925.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228672387|gb|EEL27672.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228679337|gb|EEL33540.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228685480|gb|EEL39408.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|228702539|gb|EEL55007.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228707743|gb|EEL59927.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|228712039|gb|EEL63988.1| Two-component response regulator [Bacillus cereus F65185] gi|228724025|gb|EEL75371.1| Two-component response regulator [Bacillus cereus AH676] gi|228779519|gb|EEM27772.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228786064|gb|EEM34061.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228793217|gb|EEM40767.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228799914|gb|EEM46856.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805836|gb|EEM52416.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818929|gb|EEM64991.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228837362|gb|EEM82696.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228857526|gb|EEN02022.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|296325158|gb|ADH08086.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 225 Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 +G +D ++ V++HI KLR KL +K Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209 >gi|291086571|ref|ZP_06356184.2| QseB [Citrobacter youngae ATCC 29220] gi|291067819|gb|EFE05928.1| QseB [Citrobacter youngae ATCC 29220] Length = 268 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D L+ DG G S++ F + SA D ++ L G G + Sbjct: 52 ILLVEDDTLIGDGLKTGLSKMGFSIDWFTEGRQGKEALYSAPYDAVILDLTLPGIDGRDI 111 Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R RA+ Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 112 L---REWRANGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRA 168 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + GE L +E +LE LM N+G+ + + I +Y Sbjct: 169 SGQASNTLRHGEVTLDPGALVATAAGEPLSLKPKEFALLELLMRNKGRVLPRKLIEEKLY 228 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 229 -TWDENVSSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 265 >gi|238919096|ref|YP_002932610.1| DNA-binding transcriptional regulator BaeR [Edwardsiella ictaluri 93-146] gi|238868664|gb|ACR68375.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 243 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 1/158 (0%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S+VP++ ++ L + G DD + KP RE++ARV Sbjct: 67 LMLPGVDGLTLCREIRRTSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 126 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 I RR + + +E P+ + + ++ L + E R+L+ L G ++ Q Sbjct: 127 KTILRRCMLQDTLSEPTPLLIDESRFQASYRQQLLDLTQAEFRLLKTLATQPGCVFSREQ 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 + + +Y + V + V+SHI LR+KL G +P+ Sbjct: 187 LLNHLYDDY-RVVTDRTVDSHIKNLRRKLEPVEGDEPL 223 >gi|238024893|ref|YP_002909125.1| Two component transcriptional regulator [Burkholderia glumae BGR1] gi|237879558|gb|ACR31890.1| Two component transcriptional regulator, winged helix family protein [Burkholderia glumae BGR1] Length = 244 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 13/172 (7%) Query: 53 LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L+ G LE+ R RA ++ P+I IS S + + G DD + KP E++AR Sbjct: 56 LMLPGVDGLEICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVAR 115 Query: 112 VAAIYRRL-------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 V A+ RR+ + R E G +R+ R+ V G L RE +L + + Sbjct: 116 VKALLRRVEALSRDTRAEAGRVEVGGLRLDPLTREAAVDGAAIDLTPREFDLLYHFARHP 175 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 GK ++T + +A++G E E+ V +HI++LR K+ DP R L Sbjct: 176 GKAFSRTDLLNAVWGYQHEGY-EHTVNTHINRLRAKIEA----DPAQPARIL 222 >gi|256423914|ref|YP_003124567.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256038822|gb|ACU62366.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 224 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 4/169 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G ++LE + I V +I D S+ + + G DD + KP H E+ ARV + Sbjct: 57 GDGLQILEHLKHIGKSENVIIISAKD--SVDDKIRGLNLGADDYLTKPFHIAELNARVKS 114 Query: 115 IYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR N E I+V + V L R+E IL YLMANR + ++K+ + Sbjct: 115 VLRRKTFEGKNILECANIKVDLNEFMAAVNDVPVALNRKEFDILVYLMANRNRLISKSSL 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D+A + + S I LRKKL++ + + +GY ++ Sbjct: 175 AEKVWGDYMDDADDFEFLYSQIKNLRKKLKDSGAEVKISAMYGMGYKLE 223 >gi|227487201|ref|ZP_03917517.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227092859|gb|EEI28171.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] Length = 227 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 94/198 (47%), Gaps = 19/198 (9%) Query: 10 LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+G+ A+ DG +L FN + D+ + L+ G ++ R +R Sbjct: 21 LKKEGFDAIIATDGRTALVEFN------------KNDIDLVLLDLMLPGMSGTDVCRRLR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSN 123 S VP+I ++ + + + G DD V KP RE++AR+ A+ RR V++ Sbjct: 69 QVSTVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLRRGGDSDGAVAD 128 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E G + + + V G+ +P +E +LEYL+ N G+ + + Q+ ++G D Sbjct: 129 QILEGGRVSLDVERHIVTVDGQQVAMPLKEFDLLEYLLRNAGRVLTRGQLIDRVWG-ADY 187 Query: 184 AVEENVVESHISKLRKKL 201 + ++ H+ +LR K+ Sbjct: 188 VGDTKTLDVHVKRLRSKI 205 >gi|261339001|ref|ZP_05966859.1| hypothetical protein ENTCAN_05206 [Enterobacter cancerogenus ATCC 35316] gi|288318832|gb|EFC57770.1| DNA-binding response regulator CreB [Enterobacter cancerogenus ATCC 35316] Length = 229 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 16/226 (7%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGE-KV 60 L++D + D I + EGF FE L +AR V A+ +G + Sbjct: 8 LVEDEISIADTLIYMLQQ-----EGFEVKAFERGLPVLEAARRQVPALAILDVGLPDISG 62 Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 EL R + A H +P++ ++ L + G DD V KP RE+ ARV I RR+ Sbjct: 63 FELCRQLLARHPSLPVLFLTARSDEVDKLLGLEMGADDYVAKPFSPREVCARVRTILRRM 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + S ++ I F + +P + GE L R E +L+ L+ G+ ++ Q+ Sbjct: 123 QKSAAPSDILRIGQF-ELNEPAARIHWCGEPLLLTRYEFLLLKTLLHAPGRVFSRQQLMD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G ++ + V++HI LR KLR P+ + R +GYS+ Sbjct: 182 LVWGEDGDSFDRT-VDTHIKTLRAKLRAVNAEISPISTHRGMGYSL 226 >gi|59713394|ref|YP_206169.1| transcriptional regulator [Vibrio fischeri ES114] gi|59481642|gb|AAW87281.1| transcriptional regulator [Vibrio fischeri ES114] Length = 228 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 3/131 (2%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLP 150 SG DD + KP E+ AR+ + RR +V NN + G ++ + E + L Sbjct: 93 SGADDYLVKPFSFDELHARILTVGRRGQVKNNDDDINIGLFKLDLAKKTLEFDTKFIDLT 152 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 + E +I+E L ++ + + I + G FD ++ +N +ESH+S +RKK++ G PV Sbjct: 153 KNEYKIIECLFLSKNQVMTTENISDYVVGSFD-SLSKNTIESHLSSVRKKVKALGGELPV 211 Query: 211 DSKRFLGYSID 221 +KR GY ++ Sbjct: 212 KNKRGFGYYVE 222 >gi|52144036|ref|YP_082792.1| response regulator [Bacillus cereus E33L] gi|118476873|ref|YP_894024.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|196035354|ref|ZP_03102759.1| DNA-binding response regulator [Bacillus cereus W] gi|196040638|ref|ZP_03107937.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046479|ref|ZP_03113704.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218902506|ref|YP_002450340.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225863261|ref|YP_002748639.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|254726203|ref|ZP_05187985.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|51977505|gb|AAU19055.1| response regulator [Bacillus cereus E33L] gi|118416098|gb|ABK84517.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|195992031|gb|EDX55994.1| DNA-binding response regulator [Bacillus cereus W] gi|196022663|gb|EDX61345.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028428|gb|EDX67036.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218538516|gb|ACK90914.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225785753|gb|ACO25970.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 223 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 63 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 122 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 123 KQEQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204 >gi|83859329|ref|ZP_00952850.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii HTCC2633] gi|83852776|gb|EAP90629.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii HTCC2633] Length = 228 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 12/169 (7%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R +R+ + +P+I ++ + D+G DD + KP +E+ ARV A+ R Sbjct: 62 IEVCRRLRSRHETRNLPIIMLTARGEEADRIRGLDTGADDYIVKPFLMKELFARVRAVLR 121 Query: 118 RLK--VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R++ ++ + G I RV +++ + P E R+L+YLM + G+ ++ Q Sbjct: 122 RIRPGLAEDSVTVGDITIDRVAHRVVRSDLEIHLGPT---EFRLLDYLMQHPGRVFSREQ 178 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + A++G D VE V+ HI +LRK L DP+ + R GY+++ Sbjct: 179 LLDAVWG-SDVYVEARTVDVHIGRLRKALSAGGEHDPIRTVRSAGYALN 226 >gi|299768936|ref|YP_003730962.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1] gi|298699024|gb|ADI89589.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1] Length = 222 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 11/166 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR + P++ IS LQ +D + G DD + KP E+LAR+ A+ RR Sbjct: 61 MQVLKQIRQRAVTPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRTG 120 Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V A + G + + + +G+ L RE IL LM++ K +K + Sbjct: 121 VEAQLANHEQLLQNGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMSHPNKIFSKANLE 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y FD V N +E ++ LR KLG D + + R LGY + Sbjct: 181 DKLYD-FDSEVTSNTIEVYVHHLRA----KLGKDFIRTIRGLGYRL 221 >gi|297616557|ref|YP_003701716.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] gi|297144394|gb|ADI01151.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] Length = 233 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 113/238 (47%), Gaps = 32/238 (13%) Query: 1 MFVLIDDRALV--------KDGY---IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAI 49 + V+ DD ALV ++GY +A+ GD E + ++ EW DV + Sbjct: 5 ILVVEDDHALVSLLTHNLEREGYETGVAMDGD-----EAWRKIQSGEW-------DVILL 52 Query: 50 EAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108 + L + LE+ R +R P+I ++ + + G DD V KP RE+ Sbjct: 53 DVMLPHRDG--LEICRQLRQEKNYTPVIMLTARDDEIDRVVGLEIGADDYVTKPFSVREL 110 Query: 109 LARVAAIYRR----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 +AR+ I RR L E GPI + + + ++G+ L R+E +L L+ N+ Sbjct: 111 MARIKVILRRRNLDLYEGKPEIEAGPILIRPENYEVFLKGQKVDLTRKEFELLTLLVQNK 170 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 G+ + + + ++ + + V+ V++ H+SKLR+KL + L +++ R +GY + Sbjct: 171 GRVLKRDYLLQRLWD-YGDTVKTRVLDVHVSKLREKLASYGLKGGGIETVRGIGYKFE 227 >gi|256845527|ref|ZP_05550985.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_36A2] gi|294785176|ref|ZP_06750464.1| DNA-binding response regulator ArlR [Fusobacterium sp. 3_1_27] gi|256719086|gb|EEU32641.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_36A2] gi|294486890|gb|EFG34252.1| DNA-binding response regulator ArlR [Fusobacterium sp. 3_1_27] Length = 227 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 7/176 (3%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 DV ++ L K K E+ + +R + P+I I+ S+ ++ D G +D + KP Sbjct: 50 DVVLLDLMLPKKSGK--EVCQELRKLADTPIIVITAKDSVLDKVELLDLGANDYICKPFA 107 Query: 105 HREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LAR+ R + SNN+ I++ + + E L + E ILEY M Sbjct: 108 MEELLARIRVSTRNKENSNNKHFYLENEIKMDILAKKVFLNEEEIALTKTEFLILEYFMK 167 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 N+G ++ +I ++G +D EE +V+ +I+ LRKK+ +K + + + R GY Sbjct: 168 NKGLSCSREKIIIDVWG-YDFDGEEKIVDVYINSLRKKIDSKSKY--IHTIRGFGY 220 >gi|221069740|ref|ZP_03545845.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220714763|gb|EED70131.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 270 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 5/152 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAETG 129 Q P++ +S + + +G DD + KP E+ AR+ A+ RR ++ + Sbjct: 110 QTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQIPAPTREMQVA 169 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 +RV R E G+ L RE R+L +LM + + V +T + +++ FD + N Sbjct: 170 DLRVNLISRSAERAGQPLSLQPREFRLLAFLMQHAHQIVTRTMLLESVWDYRFDP--QTN 227 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V++ HIS+LR K+ + + R +GYS+ Sbjct: 228 VIDVHISRLRSKVDKGFATPLIHTVRGVGYSL 259 >gi|94495738|ref|ZP_01302318.1| phosphate regulon response regulator [Sphingomonas sp. SKA58] gi|94425126|gb|EAT10147.1| phosphate regulon response regulator [Sphingomonas sp. SKA58] Length = 233 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 85/172 (49%), Gaps = 12/172 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +V R + + VP+I ++ + + ++G DD V KP RE++ARV A+ Sbjct: 62 GIEVCRRLRRMTGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVL 121 Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR++ A G F+D G G+V PL E R+L++ + + G ++ Sbjct: 122 RRVRP----ALAGETLTFADVEMDTVGHKVRRSGQVIPLGPTEFRLLKHFLEHPGWVFSR 177 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 ++ +++G D +E V+ HI +LRK + + D + + R GY++D Sbjct: 178 ERLLDSVWGQ-DSDIELRTVDVHIRRLRKAINADGQYQDIIRTVRSAGYALD 228 >gi|254775729|ref|ZP_05217245.1| two component system response regulator [Mycobacterium avium subsp. avium ATCC 25291] Length = 240 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 5/185 (2%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 E L R D+ ++ L G+ L +IR + ++ I+ L L D G Sbjct: 56 EELLDGIRPDLVVLDVMLPGR--DGFALIDVIRDWGDIGIVLITARDGLPDRLRGLDGGA 113 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR 155 DD V KP E+++RV A+ RR + G + + G L E R Sbjct: 114 DDYVIKPFELAELVSRVGAVLRRRGRLPQVIQVGDVTLDPGAGVAARGGHRLDLTATELR 173 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 +L +L+ RG+ V+ QI + ++G +A + N+V+ H+S LR+KL G + + R Sbjct: 174 VLTFLVEQRGRIVSAGQILNGVWGY--DAYDPNLVQVHVSGLRRKLEAH-GPRILHTVRG 230 Query: 216 LGYSI 220 +GY + Sbjct: 231 IGYRL 235 >gi|254486691|ref|ZP_05099896.1| two component transcriptional regulator, winged helix family [Roseobacter sp. GAI101] gi|214043560|gb|EEB84198.1| two component transcriptional regulator, winged helix family [Roseobacter sp. GAI101] Length = 218 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 12/153 (7%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 + P+I ++ + +D + G DD V KP E+ AR+ + RR ++ +T I Sbjct: 72 RTPIIILTARDKVSDRIDGLNRGADDYVIKPFDLDEVTARIHTVCRR--SADLLTQTISI 129 Query: 132 R----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 R SD G L RE +L+ L+ + + V K + +AIYG + E VE Sbjct: 130 RDLTICLSD-HSVSRAGNPVRLTAREWGVLDVLLRRKTQIVPKETLETAIYG-YGEEVES 187 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N +E+HIS +LR KLG D + + R +GYS+ Sbjct: 188 NALEAHIS----RLRTKLGKDLIATHRGIGYSL 216 >gi|187735330|ref|YP_001877442.1| two component transcriptional regulator, winged helix family [Akkermansia muciniphila ATCC BAA-835] gi|187425382|gb|ACD04661.1| two component transcriptional regulator, winged helix family [Akkermansia muciniphila ATCC BAA-835] Length = 232 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 10/166 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + +R +QVP++ ++ + +D D+G DD + KP RE+LAR+ + RR + Sbjct: 65 LEVLKQLREWTQVPILILTAWDREDEKVDALDAGADDYLTKPFSGRELLARLRVMLRRNR 124 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GPI V R E E L +E IL L+ ++GK + Q+ I+ Sbjct: 125 PDREPSVFRLGPIVVDLSSRRVEKGKEEIHLTSKEYGILRLLLLHQGKVMTHRQLLREIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSI 220 G E + + + HI+ LR+KL + DP + ++ LGY I Sbjct: 185 GPQHEE-DTHYLRVHIAHLRQKLGDS---DPENRIIRAESGLGYRI 226 >gi|65320879|ref|ZP_00393838.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] Length = 225 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 +G +D ++ V++HI KLR KL +K Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209 >gi|302876997|ref|YP_003845630.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307687688|ref|ZP_07630134.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302579854|gb|ADL53866.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 231 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 9/142 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNR 125 IR +P+I IS + ++ G DD V+KP E++ARV A RR K SN++ Sbjct: 70 IRKVKVMPIIVISAKTAQGDKINVLKLGADDFVSKPFDIYEVVARVEAQLRRYKEFSNSK 129 Query: 126 AETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E+ I + D R+ V+ + L RE ILE LM N K + IF ++ Sbjct: 130 EESNRLIYKNITLDLDAREAFVKDKQLSLTFREFEILELLMKNPKKVFTRANIFQTVWN- 188 Query: 181 FDEAV-EENVVESHISKLRKKL 201 DE + ++N + H+S LR KL Sbjct: 189 -DEFLGDDNTINVHMSNLRSKL 209 >gi|210622859|ref|ZP_03293382.1| hypothetical protein CLOHIR_01330 [Clostridium hiranonis DSM 13275] gi|210153964|gb|EEA84970.1| hypothetical protein CLOHIR_01330 [Clostridium hiranonis DSM 13275] Length = 233 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 9/149 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR + P+I +S S + F+ G DD + KP RE+LA++ A RR K Sbjct: 63 FEVCQKIRDNVVCPIIFLSARQSETDKIRGFNLGGDDYITKPFGLRELLAKIEANLRREK 122 Query: 121 VSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S E R G R EV G+ PL + E I+E L N G+ K Q Sbjct: 123 RSQYLNEENKRRKLYFGNLSLDIKDRVVEVCGKDIPLTKTEYEIVELLALNAGQVFTKEQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I+ ++G +D+ + V I K+R+K Sbjct: 183 IYEKVWG-YDKGGDNTTVVEMIKKIRRKF 210 >gi|163736175|ref|ZP_02143594.1| two-component response regulator [Phaeobacter gallaeciensis BS107] gi|161390045|gb|EDQ14395.1| two-component response regulator [Phaeobacter gallaeciensis BS107] Length = 221 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 13/158 (8%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A PLI ++ +++ ++ ++G DD ++KP E+LAR+ A+ RR + AET Sbjct: 65 ARITTPLILLTALGAVEDRVEGLEAGADDYLSKPFAMTELLARITALGRRGRAEA--AET 122 Query: 129 GPIRVFSDGRDPE-------VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 R+ G D + G L +E R+LE LM ++G+ + + ++ + Sbjct: 123 A-TRLSHRGLDLDLLSQTCACNGTTVLLNPKEFRLLEVLMRSKGRIQTRAMLLERVWDIN 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD + +VVE+H+S+LR K+ G + + + R GY Sbjct: 182 FDPST--SVVETHMSRLRNKIEKPFGLEFIKTVRGSGY 217 >gi|94311936|ref|YP_585146.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|94312967|ref|YP_586176.1| winged helix family two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|94313900|ref|YP_587109.1| winged helix family two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|241765752|ref|ZP_04763697.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|93355788|gb|ABF09877.1| two component transcriptional regulator, winged helix family (Tn6048) [Cupriavidus metallidurans CH34] gi|93356819|gb|ABF10907.1| two component transcriptional regulator, winged helix family (Tn6048) [Cupriavidus metallidurans CH34] gi|93357752|gb|ABF11840.1| two component transcriptional regulator, winged helix family (Tn6048) [Cupriavidus metallidurans CH34] gi|241364378|gb|EER59508.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|254966516|gb|ACT97243.1| MmfR [Synthetic plasmid pMOL98] gi|325528823|gb|EGD05874.1| winged helix family two component transcriptional regulator [Burkholderia sp. TJI49] Length = 221 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 57 GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ LE+ IRA VPL+ I+ L L D G DD V+KP E+LAR+ A+ Sbjct: 56 GKDGLEVLASIRAKDNPVPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELLARMRAV 115 Query: 116 YRRLK------VSNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRV 168 RR +SN P + D P+VQ L RE +L+ L+ G + Sbjct: 116 LRRKGGTAAPVLSNGVVTLDPATKEACANDGPQVQ-----LSNREFSLLQALLVRPGAIL 170 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++++ IYG + E VE N VE I LR+ KLG + + + R +G+ + Sbjct: 171 SRSELEDRIYG-WGEEVESNAVEYLIHALRR----KLGGEVIKNVRGVGWMV 217 >gi|308175743|ref|YP_003922448.1| two component transcriptional regulator, winged helix family [Bacillus amyloliquefaciens DSM 7] gi|307608607|emb|CBI44978.1| two component transcriptional regulator, winged helix family [Bacillus amyloliquefaciens DSM 7] gi|328555717|gb|AEB26209.1| two component transcriptional regulator, winged helix family protein [Bacillus amyloliquefaciens TA208] gi|328914103|gb|AEB65699.1| two component transcriptional regulator, winged helix family [Bacillus amyloliquefaciens LL3] Length = 227 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 101/214 (47%), Gaps = 14/214 (6%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 LV +G+ + DG+S N L + + ++ ++ + G LEL R+++ Sbjct: 25 GLVNEGFEVMSAADGMS--AMN-------LVKTFQPHIAVLDVMM--PGMDGLELSRMLK 73 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNRAE 127 S +I ++ ++ + G DD + KP E+LAR+ A I + + Sbjct: 74 KTSNTAVIMLTAKDEVELRVKALIEGADDYMIKPFSFEELLARIYARIRNQFPHLFDEVV 133 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 GP R+ R+ + L E +L++L+ G ++KT+I ++G +D E+ Sbjct: 134 LGPFRIDDRSREIHYNEQPLKLSATEYELLKFLVLRHGTVLSKTRILDQVWG-YDFYGED 192 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 N+VE +I LR+KL++K + + R GY +D Sbjct: 193 NIVEVYIRSLREKLKDK-EHKVIRTVRGAGYRVD 225 >gi|83649242|ref|YP_437677.1| response regulator [Hahella chejuensis KCTC 2396] gi|83637285|gb|ABC33252.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 219 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 6/151 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 ++P++ +S +Q + D+G DD + KP E+ AR+ A+ RR ++ + Sbjct: 72 EIPVLILSARDQVQDRVKGLDAGADDYLLKPFDVSELKARLRALSRRGSGNAHPEIQLAN 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 IR+ E L RRE +L L ++RG+ ++K Q+ +YG D+ V N + Sbjct: 132 IRILPSSYQVYKSAEEVRLSRREYALLYELASHRGRVLSKDQLEELVYGWSDD-VSSNTM 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E HI LRKKL D + + R +GY I+ Sbjct: 191 EVHIHNLRKKLNP----DLIKTVRGMGYMIE 217 >gi|71908428|ref|YP_286015.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] gi|71848049|gb|AAZ47545.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] Length = 218 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 12/134 (8%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146 D+G DD + KPI E+ AR+ A+ RR S RA G + + + G+ Sbjct: 91 LDAGADDYLVKPIDLDELTARIRALTRR---SAGRAAPLLTHGELSIDLAAHRVTLAGQE 147 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L RE +L+ L+ + G+ + +TQ+ ++YG DE + N +E HI LRKKL ++L Sbjct: 148 IELSSREFSLLQMLLESAGRVLTRTQLEQSLYGWHDEP-DSNALEVHIHHLRKKLGSEL- 205 Query: 207 FDPVDSKRFLGYSI 220 + + R +GY+I Sbjct: 206 ---IRTLRGVGYTI 216 >gi|327192961|gb|EGE59877.1| two component transcriptional regulator, winged helix family [Rhizobium etli CNPAF512] Length = 223 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 83/168 (49%), Gaps = 12/168 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE + +P + R P+I ++ + ++ D G DD + KP E++AR+ A+ Sbjct: 57 GEGLRFIPELRRTGRDTPIIVLTARNEPKERVEGLDLGADDYLGKPFLVEELMARLRAVL 116 Query: 117 RR------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR LK++ R P+ + D + LPRRE +L L + K V + Sbjct: 117 RRPPNLAELKITAGRMVIDPLHLSVTVDDAPLD-----LPRRELLVLAALAKRKEKTVLR 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +A+Y ++E ++ N +++HIS+LR++L + + R +GY Sbjct: 172 ATLEAAVYN-YEEEIQSNALDAHISRLRRRLAEAGAEVSIHNIRGVGY 218 >gi|311896850|dbj|BAJ29258.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 230 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 9/148 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRQLRVRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPYSTRELVARIRAVLRRRGE 121 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ Sbjct: 122 DGGADGAAAPGALEAGPVRMDVDRHVVTVDGAKVDLPLKEFDLLEMLLRNAGRVLTRMQL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G D + ++ H+ +LR K+ Sbjct: 182 IDRVWG-ADYVGDTKTLDVHVKRLRAKI 208 >gi|238922516|ref|YP_002936029.1| hypothetical protein EUBREC_0090 [Eubacterium rectale ATCC 33656] gi|238874188|gb|ACR73895.1| hypothetical protein EUBREC_0090 [Eubacterium rectale ATCC 33656] Length = 220 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 3/158 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IRA P++ ++ + ++ G DD ++KP E+ AR+ A RR Sbjct: 61 ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120 Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ R G + + + V + PL + E I E+L NRG+ +K QI A++G Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD ++ + +HI +R K + + PV + +GY Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPVKTVWGIGY 216 >gi|119960910|ref|YP_948727.1| KDP operon transcriptional regulatory [Arthrobacter aurescens TC1] gi|119947769|gb|ABM06680.1| KDP operon transcriptional regulatory [Arthrobacter aurescens TC1] Length = 224 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 12/191 (6%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 LQ++A++ V + L +E+ R IR S +P+I +S + + ++ D+G DD Sbjct: 38 LQATAKQPVEIVVLDLGLPDMDGVEIIRRIRGWSSMPIIVLSARHASEDKVEALDAGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERR 155 V KP E+LAR+ RR+ + D G+ G L E Sbjct: 98 YVTKPFGLDELLARLRVASRRVVTEHEEPTLATTDFMVDLAGKKIVKDGSEVRLTPTEWN 157 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 ILE L+ N+GK V++ QI + ++G A E + +I++LR+KL DP + + Sbjct: 158 ILELLVRNKGKLVSQQQILTQVWGQA-YAKETQYLRVYIAQLRRKLER----DPAEPRHL 212 Query: 216 -----LGYSID 221 +GY D Sbjct: 213 HTEAGMGYRFD 223 >gi|297538213|ref|YP_003673982.1| winged helix family two component transcriptional regulator [Methylotenera sp. 301] gi|297257560|gb|ADI29405.1| two component transcriptional regulator, winged helix family [Methylotenera sp. 301] Length = 230 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 16/171 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E RIIR S +P+I ++ + +SG DD V KP RE+LAR+ A+ RR K Sbjct: 62 IETLRIIRQASHIPVIMLTAKGDESERVMGLESGADDYVAKPCTPRELLARIRALLRRSK 121 Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + ++ G + + R EV G+ L E +LE L N G V K + Sbjct: 122 ITKDGSQQALQIVIGGLTITPAQRRVEVAGKAINLTSTEFNLLEILAKNAGHVVCKEDLA 181 Query: 175 SAIYG----LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 G FD + V+ H+S +R+K+ + G D + + +GY + Sbjct: 182 LQAMGRTLVRFDRS-----VDVHMSSIRQKIGTSSNGSDYIQTVYRMGYQL 227 >gi|295398647|ref|ZP_06808671.1| response regulator [Aerococcus viridans ATCC 11563] gi|294973082|gb|EFG48885.1| response regulator [Aerococcus viridans ATCC 11563] Length = 235 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 12/150 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R S VP+I ++ S+ + FD G DD + KP E+LAR+ A+ RR+ Sbjct: 66 IEVCRRLRPTSDVPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRID 125 Query: 121 VSNNRAETGPIRVFSDGRDPEVQG---------EVFPLPRRERRILEYLMANRGKRVAKT 171 + + +V RD V+ E+ L +RE +L LM N + +T Sbjct: 126 IEEEQQHRKQTKVTF--RDLSVEKENRIVRRGEEIIDLTKREYELLVMLMENVNVVLPRT 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ + ++G + VE NVV+ +I LR K+ Sbjct: 184 ELLNKVWG-YTTEVETNVVDVYIRYLRNKI 212 >gi|293380991|ref|ZP_06627022.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|290922454|gb|EFD99425.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] Length = 239 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 23/229 (10%) Query: 12 KDGYIALFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP-- 64 KDG I L D+ S+ F LEFE++ A + A++ F K +L LP Sbjct: 4 KDGKILLVEDEE-SVASFVKTELEFEDYQVVWAEDGKKALDLFTQEKPTLILLDWMLPVY 62 Query: 65 ------RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 R IR S VP+I ++ S D G+DD + KP E+LAR+ + RR Sbjct: 63 DGMTVLRRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRR 122 Query: 119 LK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L+ V + E GP+++ + E L +E ++ LM + K ++ Sbjct: 123 LEKMRQQNDVPDTSLEFGPLKIDLLKHEFYCDTEQIYLTPKEFALITELMRDPEKVKSRD 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ ++G +D + N V+ +I +R K+ N + + R LGY + Sbjct: 183 ELLDTVWG-YDFVGQTNTVDVYIRTIRNKIGNPYK-KIIKTMRGLGYCL 229 >gi|283766070|gb|ADB28435.1| two-component regulator protein PhoP [Edwardsiella tarda] Length = 224 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 2/150 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P++ ++ S Q + ++G DD V KP H E+LAR+ A+ RR +++ P Sbjct: 73 LPILVLTARESWQEKVAVLEAGADDYVTKPFHLEEVLARMQALMRRNSGLASQIISMPPF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + R+ V + L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 133 QADLSRRELRVNETLIKLTAFEYTIIETLIRNSGKVVSKDALMLQLYP-DAELRESHTID 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +LRKKL+N+ D + + R GY D Sbjct: 192 VLMGRLRKKLQNEYPADVITTVRGQGYRFD 221 >gi|161503675|ref|YP_001570787.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865022|gb|ABX21645.1| hypothetical protein SARI_01759 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|219523852|gb|ACL14889.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Arizona] Length = 224 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 5/218 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ ++ + D++ I+ L E L Sbjct: 5 LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIIDLGL--PDEDGLS 62 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R+ +P++ ++ Q ++ SG DD V KP H E++AR+ A+ RR Sbjct: 63 LIRRWRSSDVLLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ V E+ L E I+E L+ N GK V+K + +Y Sbjct: 123 LASQVINIPPFQVDLSRRELSVNEEIIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E E + ++ + +LRKK++ + D + + R GY Sbjct: 182 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGY 219 >gi|163815874|ref|ZP_02207244.1| hypothetical protein COPEUT_02053 [Coprococcus eutactus ATCC 27759] gi|158448684|gb|EDP25679.1| hypothetical protein COPEUT_02053 [Coprococcus eutactus ATCC 27759] Length = 226 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 4/148 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G E+ + IRA S VP+I ++ + L +D G DD V KP E+ A++ + Sbjct: 62 GADGFEICKAIRAKSYVPVIFLTARGREEDRLYGYDIGCDDYVVKPFSMAELSAKIMSFL 121 Query: 117 RRLK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR K + E I ++ D V G L +E +L+Y M +RG + + + Sbjct: 122 RRSKGLWEKKSSIEAYDIVIYPDKLQVFVAGNEVRLAPKEYAMLKYFMEHRGMLITRDDL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G +D + VV++HI KLR+ L Sbjct: 182 LVRLWG-YDYEGSDRVVDNHIKKLRQAL 208 >gi|118463210|ref|YP_882465.1| two component system response regulator [Mycobacterium avium 104] gi|118164497|gb|ABK65394.1| two component system response regulator [Mycobacterium avium 104] Length = 239 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 5/185 (2%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 E L R D+ ++ L G+ L +IR + ++ I+ L L D G Sbjct: 55 EELLDGIRPDLVVLDVMLPGR--DGFALIDVIRDWGDIGIVLITARDGLPDRLRGLDGGA 112 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR 155 DD V KP E+++RV A+ RR + G + + G L E R Sbjct: 113 DDYVIKPFELAELVSRVGAVLRRRGRLPQVIQVGDVTLDPGAGVAARGGHRLDLTATELR 172 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 +L +L+ RG+ V+ QI + ++G +A + N+V+ H+S LR+KL G + + R Sbjct: 173 VLTFLVEQRGRIVSAGQILNGVWGY--DAYDPNLVQVHVSGLRRKLEAH-GPRILHTVRG 229 Query: 216 LGYSI 220 +GY + Sbjct: 230 IGYRL 234 >gi|89902709|ref|YP_525180.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89347446|gb|ABD71649.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 224 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ + +RA S +P++ ++ ++ + D G DD + KP E+ ARV A+ RR Sbjct: 61 LEVLKKLRARGSALPVLILTAADGVEERVKGLDLGADDYMAKPFSLHELEARVRALSRRG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + +++ + GP+ GR + G + L RE +LE ++ G+ V+K Q+ + Sbjct: 121 MGSASSTIKHGPLIYDQSGRVATIDGVMVELSARELGLLEVMLQRVGRLVSKDQLVERLC 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E +I +LRKK+ G + + R LGY ++ Sbjct: 181 E-WGEEVSNNAIEVYIHRLRKKIEK--GPIRIATVRGLGYCLE 220 >gi|30261401|ref|NP_843778.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47526577|ref|YP_017926.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184231|ref|YP_027483.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65318666|ref|ZP_00391625.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|167634425|ref|ZP_02392746.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167639277|ref|ZP_02397549.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686885|ref|ZP_02878105.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170706300|ref|ZP_02896761.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651390|ref|ZP_02934179.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|227815860|ref|YP_002815869.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229604024|ref|YP_002865817.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254682541|ref|ZP_05146402.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254733959|ref|ZP_05191673.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254740353|ref|ZP_05198044.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254753741|ref|ZP_05205776.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254758837|ref|ZP_05210864.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30255255|gb|AAP25264.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47501725|gb|AAT30401.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178158|gb|AAT53534.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|167512716|gb|EDR88090.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530313|gb|EDR93039.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170128834|gb|EDS97700.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669408|gb|EDT20151.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082668|gb|EDT67731.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|227002678|gb|ACP12421.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229268432|gb|ACQ50069.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 223 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 63 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 122 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 123 KQEQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204 >gi|148544452|ref|YP_001271822.1| two component transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184153816|ref|YP_001842157.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|227363120|ref|ZP_03847255.1| response regulator [Lactobacillus reuteri MM2-3] gi|325682774|ref|ZP_08162290.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] gi|148531486|gb|ABQ83485.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri DSM 20016] gi|183225160|dbj|BAG25677.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|227071838|gb|EEI10126.1| response regulator [Lactobacillus reuteri MM2-3] gi|324977124|gb|EGC14075.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] Length = 228 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 11/204 (5%) Query: 27 EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+++ L+ L+++ +D I L+ +E+ R +R P+I ++ S Sbjct: 24 EGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNGIEVARRVREIKDTPIIIMTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIR-----VFSD 136 + + D G DD + KP E+LARV A+ RR+ + NN+ + + + Sbjct: 84 VIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISIEDGNNKEHQTTVNYKDLTIEKE 143 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 R EV L +RE +L LM N +++ + S ++G +D VE NVV+ +I Sbjct: 144 NRVVRRGDEVINLTKREYELLLILMENINVVMSRKDLLSKVWG-YDSKVETNVVDVYIRY 202 Query: 197 LRKKLRNKLGFDPVDSKRFLGYSI 220 LR K+ + + R GY I Sbjct: 203 LRNKIDRPGEKSYIQTVRGTGYVI 226 >gi|47566185|ref|ZP_00237213.1| two-component response regulator [Bacillus cereus G9241] gi|47556738|gb|EAL15069.1| two-component response regulator [Bacillus cereus G9241] Length = 223 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 63 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 122 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 123 KQEQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204 >gi|300766939|ref|ZP_07076852.1| DNA-binding response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300495477|gb|EFK30632.1| DNA-binding response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 234 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 106/227 (46%), Gaps = 28/227 (12%) Query: 16 IALFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV------------- 60 I + D+G SL G+ L+FE++ A + ++A+E + + E + Sbjct: 5 ILIVEDEG-SLSGYLTKELQFEDFNVLVAADGLAAMETYQAHQNELLLILLDWMLPKLDG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR H QVP+I ++ + + D+G DD + KP E+LAR+ I RR++ Sbjct: 64 MEVLRRIRKHDQVPVIIMTARDYVGDKVAGLDNGADDYITKPFEIEELLARIRVIQRRIE 123 Query: 121 VSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N+ E + D R Q EV L RE +L++ +A+ + + + Sbjct: 124 ---NQVEPNQVYQLDDVQLDTKAHRVTNGQEEV-TLTHREYDLLQFFLAHPDEVFTRDDL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D ++NVV+ ++ LR K+ + + R +GY + Sbjct: 180 LDQVWGA-DFLGQQNVVDVYVGYLRNKITTTGASPLIQTVRGVGYKL 225 >gi|327469596|gb|EGF15065.1| DNA-binding response regulator [Streptococcus sanguinis SK330] Length = 218 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 7/160 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR SQ+P++ ++ T L F+ + D V KP ++ R+ I RR Sbjct: 61 LEVLKEIRKTSQIPVMILTALDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRNT 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ A G + V D QGE PL ++E IL+ L +G V + Q+ + I+G Sbjct: 121 LASEIA-VGDLTVSIDDCTVYWQGEKMPLTKKEYEILQTLAKRKGHLVTRDQLMNTIWGY 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ V+++HI +RKK+ P+ + +GY + Sbjct: 180 SE--LDSRVLDNHIKNIRKKIPGV----PLKTITGMGYQL 213 >gi|316936295|ref|YP_004111277.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315604009|gb|ADU46544.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 221 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 105/215 (48%), Gaps = 18/215 (8%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L + GY+A DG E W + ED +AI L G L + + Sbjct: 18 RGLGEAGYLAEIVGDG----------EEAWFRGDT-EDYAAIILDLGLPGLDGLTILKRW 66 Query: 68 RAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125 R + ++ P++ ++ S +D D+G DD + KP E+LAR+ +I RR +++ Sbjct: 67 RDNGRLTPVLILTARGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSAGHASSV 126 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 G + + V+G+ L E R+ YL+ +RG+ V++ ++ IYG D+A Sbjct: 127 VSIGDVTLDERQMQVSVRGKPVALSPLEYRLASYLVLHRGRVVSQFELAENIYGQ-DDAH 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E + ++R+ K+G D ++++R GY + Sbjct: 186 DSNAIEVLVGRVRR----KIGVDLIETRRGFGYIV 216 >gi|269137806|ref|YP_003294506.1| DNA-binding response regulator in two-component regulatory system with QseC [Edwardsiella tarda EIB202] gi|267983466|gb|ACY83295.1| DNA-binding response regulator in two-component regulatory system with QseC [Edwardsiella tarda EIB202] gi|304557861|gb|ADM40525.1| Two-component system response regulator QseB [Edwardsiella tarda FL6-60] gi|308084102|gb|ADO13167.1| QseB [Edwardsiella tarda] gi|308084104|gb|ADO13168.1| QseB [Edwardsiella tarda] Length = 219 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 11/204 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 +LI+D L+ DG A G +L+ F + SA D ++ L G G ++L Sbjct: 4 LLIEDDRLIGDGIKAGLSKMGFTLDWFTDGQLGMTALESAPYDAVILDLSLPGIDGLEIL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R A P++ ++ +L+ + G DD + KP E+ AR+ A+ RR Sbjct: 64 R--RWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRR--- 118 Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ +A+T G + + + G PL +E +LE L+ N G+ + ++ I + Sbjct: 119 NHGQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKL 178 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 Y +D+ V N VE HI LR+KL Sbjct: 179 YS-WDDDVSSNAVEVHIHHLRRKL 201 >gi|261408871|ref|YP_003245112.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329928807|ref|ZP_08282646.1| response regulator MprA [Paenibacillus sp. HGF5] gi|261285334|gb|ACX67305.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328937450|gb|EGG33871.1| response regulator MprA [Paenibacillus sp. HGF5] Length = 228 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 4/159 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 L R+ S +P++ ++ ++ + D+G DD + KP E+LARV A+ RR Sbjct: 65 LRRLREGGSTIPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRKTGD 124 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 SN+R + + +D R+ G+ L +E +L M N + +++ I I+G Sbjct: 125 DTSNHRLTFEDLVMDTDAREVIRGGQRLELTAKEFELLHLFMQNPKRVLSRDLIMDKIWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +D + E NV+E +I+ LR+K G + + R GY Sbjct: 185 -YDYSGESNVLEVYIAMLRQKTEEHGGKRLIQTIRGAGY 222 >gi|171915578|ref|ZP_02931048.1| two component transcriptional regulator, winged helix family protein [Verrucomicrobium spinosum DSM 4136] Length = 247 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 23/184 (12%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R VP+I ++ S + + G DD + KP RE+ ARV A+ RR + Sbjct: 65 EVCRQVRTSKNVPVIFLTARSSEVDRVVGLEIGGDDYLCKPFSPRELTARVRAVLRRTQP 124 Query: 122 SNNRAETGPIR-----------------VFSDGRDPEVQ--GEVFPLPRRERRILEYLMA 162 A TGPI+ V D +++ GEV PL R E R+L+ L Sbjct: 125 QAAPAATGPIQAQVTPQPQAGPLGATTPVVVDETRCQIRYFGEVLPLSRYEYRLLQTLAR 184 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + G+ +++Q+ D A+E V++H+ LR K++ + + + + R +GYS+ Sbjct: 185 HPGRVFSRSQLMEHASDEPDAAMERT-VDAHVKSLRAKMKLIREEVEAIVTHRGMGYSLT 243 Query: 222 --WN 223 W+ Sbjct: 244 EAWS 247 >gi|149276901|ref|ZP_01883044.1| two-component response regulator [Pedobacter sp. BAL39] gi|149232570|gb|EDM37946.1| two-component response regulator [Pedobacter sp. BAL39] Length = 225 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 78/149 (52%), Gaps = 4/149 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G K+L+ ++ + + +I IS +L+ + + G DD + KP H E+ AR+ + Sbjct: 57 GNGMKILD--QLKAQNKEDGVIIISAKNALEDKIRGLELGADDYLAKPFHLSELSARIFS 114 Query: 115 IYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR +N N + G ++V + EV G V L ++E +L + M N+ K ++K+ + Sbjct: 115 VIRRKNFANSNFIQQGELKVDLLAKTVEVAGSVVTLTKKEFDLLLFFMGNKNKVISKSAL 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKL 201 + G L D + + +HI L+KKL Sbjct: 175 AEHLSGDLADMLDNHDFIYAHIKNLKKKL 203 >gi|121596283|ref|YP_988179.1| two component transcriptional regulator [Acidovorax sp. JS42] gi|120608363|gb|ABM44103.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 224 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ S +P++ ++ S+ + D G DD + KP E+ ARV A+ RR + Sbjct: 64 LKRLRGRGSALPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALTRRGMGG 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +++ GP+ GR + G++ L RE +LE L+ G+ V+K Q+ + + Sbjct: 124 TSSAIRHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLCE-W 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E V N +E +I +LRKK+ G + + R LGY ++ Sbjct: 183 GEEVSNNAIEVYIHRLRKKIER--GPIRIATVRGLGYCLE 220 >gi|238791834|ref|ZP_04635471.1| Two-component response regulator of virulence determinant [Yersinia intermedia ATCC 29909] gi|238728938|gb|EEQ20455.1| Two-component response regulator of virulence determinant [Yersinia intermedia ATCC 29909] Length = 223 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 104/202 (51%), Gaps = 7/202 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G ++ ++ E + +LQ A D++ I+ L GE L Sbjct: 4 LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHA-PDIAIIDLSL--PGEDGL 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L R R+H + +P++ ++ S Q + ++G DD V KP H E++AR+ A+ RR + Sbjct: 61 SLIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNI 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ E P ++ R+ V + L E I+E L+ N GK V+K + +Y Sbjct: 121 GLASQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 E E + ++ + +LRKKL Sbjct: 181 -DAELRESHTIDVLMGRLRKKL 201 >gi|330445874|ref|ZP_08309526.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490065|dbj|GAA04023.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 223 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 93/208 (44%), Gaps = 18/208 (8%) Query: 28 GFNSLEF--------EEWLQSSAREDVSAIEAFLIGKG-EKVLELPRIIRAHSQVPLIGI 78 GFN+L F +E L + D I L+ G + + L ++ + + +I + Sbjct: 19 GFNNLGFTTDEAENGDEGLSLALNNDYDIIILDLMLPGVDGMTILNKLRQTGIETRIIIL 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR 138 S Q +D G DD V KP E+ ARV AI RR + N T I + Sbjct: 79 SAKTHSQDRIDGLLQGADDYVTKPFSFDELHARVLAISRRCQAIN---VTNTIEIDGFIL 135 Query: 139 DPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 DP + + L E +I++YL +RG+ + + I I FD + +N +E H Sbjct: 136 DPSKKTLFYGSHDLELTPNEFKIVDYLFTHRGQILTTSMISDNIANNFD-YIAKNTIEVH 194 Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSID 221 IS +RKK + P+ +KR GY I+ Sbjct: 195 ISTMRKKAKKIDAVLPIKNKRGFGYYIE 222 >gi|307944018|ref|ZP_07659360.1| sensory transduction protein regX3 [Roseibium sp. TrichSKD4] gi|307772859|gb|EFO32078.1| sensory transduction protein regX3 [Roseibium sp. TrichSKD4] Length = 256 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 6/152 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ET 128 P++ ++ S L F +G DD V KP RE++ R+ AI RR +++N E Sbjct: 96 TPILFLTALGSETNVLQGFAAGADDYVVKPFSPRELIVRIKAILRRSQMANEAEAQLLEV 155 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 GPI++ + + G L E +IL L+ + +++ Q+ S +YG D AV Sbjct: 156 GPIQLDLEHPSCNLSGRTISLTPCEYKILRGLLERPRRVLSRGQLISLLYG-NDVAVGPK 214 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ H+ LR K+ + G +++ R GY I Sbjct: 215 AIDVHVHNLRAKIGDDAGV-IIETVRGFGYRI 245 >gi|269119156|ref|YP_003307333.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] gi|268613034|gb|ACZ07402.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] Length = 230 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 19/175 (10%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL+L R + VP+I ++ + + D G DD + KP E+LAR+ A+ Sbjct: 59 GLSVLKLLR--ESKIPVPVILLTAKSQTEDKVQGLDFGADDYLEKPFQMEELLARLRALT 116 Query: 117 RR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RR +K + P + RD ++ L +E + LE L+ N+ Sbjct: 117 RRKGELIFDGIMKFGD--ISLNPHLLLLSCRDNKIN-----LTLKESQALELLITNKNTA 169 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 V+K I ++G +D E+N E HIS LRKKL+ + + R +GY I + Sbjct: 170 VSKETIIEKLWG-YDSEAEDNHAEIHISLLRKKLKQAGSVLLIKAIRGIGYIIKY 223 >gi|229031256|ref|ZP_04187262.1| Two-component response regulator [Bacillus cereus AH1271] gi|228730014|gb|EEL80988.1| Two-component response regulator [Bacillus cereus AH1271] Length = 225 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 10/149 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G +D ++ V++HI KKLRNKLG Sbjct: 184 WG-YDYYGDDRTVDTHI----KKLRNKLG 207 >gi|222112512|ref|YP_002554776.1| winged helix family two component transcriptional regulator [Acidovorax ebreus TPSY] gi|221731956|gb|ACM34776.1| two component transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] Length = 224 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ S +P++ ++ S+ + D G DD + KP E+ ARV A+ RR + Sbjct: 64 LKRLRGRGSALPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALTRRGMGG 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +++ GP+ GR + G++ L RE +LE L+ G+ V+K Q+ + + Sbjct: 124 TSSAIRHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLCE-W 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E V N +E +I +LRKK+ G + + R LGY ++ Sbjct: 183 GEEVSNNAIEVYIHRLRKKIER--GPIRIATVRGLGYCLE 220 >gi|168186993|ref|ZP_02621628.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] gi|169295082|gb|EDS77215.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] Length = 235 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 91/210 (43%), Gaps = 39/210 (18%) Query: 46 VSAIEAFLIGKGEKV------LELPRI--------IRAHSQVPLIGISDYPSLQTTLDFF 91 V+ +EAF I KV + +P+I IR +P+I +S + Sbjct: 32 VNGLEAFEIISNNKVDIAIIDIMMPKIDGYHLIKKIREKYDIPIIMLSAKSEYSDKILGL 91 Query: 92 DSGVDDVVNKPIHHREILARVAAIYRR-----------LKVSNNRAETGPIRVFSDGRDP 140 D G DD V KP + E++ARV A RR LK + E G +R+ + Sbjct: 92 DLGADDYVTKPFNAMEVVARVNAQLRRYNKLKKNTYVNLKEKKSYLECGNLRLNINTCTL 151 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-----YGLFDEAVEENVVESHIS 195 L E +I+ YL+ N+G+ K QIF + YG ++N + HIS Sbjct: 152 YKDNVEVYLTSTEYKIISYLLENKGRVFTKKQIFEYVWEEPFYG------DDNAIMVHIS 205 Query: 196 KLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223 LR K+ + +P + + R LGY +D N Sbjct: 206 NLRDKVEDD-SKNPKYIKTIRGLGYKLDAN 234 >gi|160895572|ref|YP_001561154.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160361156|gb|ABX32769.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 241 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 65/238 (27%), Positives = 110/238 (46%), Gaps = 24/238 (10%) Query: 1 MFVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK 56 + ++++D + A DG ++ +G +L+ L R D+ ++ L G Sbjct: 13 LVLVVEDEPAIASILTAYLERDGLRSRMASDGQEALQLFRLL----RPDLVLLDIHLPGM 68 Query: 57 -GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G VL R IR SQ P+I ++ L G DD V KP + E++ARV A+ Sbjct: 69 DGIDVL---RAIRDDSQTPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAV 125 Query: 116 YRRLKVSNNRAET----GPIRVFSDGRDPEV---QGEVFPLP--RRERRILEYLMANRGK 166 RR + N A GPI + ++ V +G PLP E R+L L A + Sbjct: 126 LRRTQARKNPAPAPIRVGPIEIDAEAHSAVVYDNEGRALPLPLTLTEFRLLACLAAQPRR 185 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223 +++ + + L + E V++SH+SKLR+KL+ +++ R +GY + W+ Sbjct: 186 CFSRSHLIE--HCLPESDALERVIDSHLSKLRRKLQLAGQEGLIETVRGIGYRLWPWD 241 >gi|222107067|ref|YP_002547858.1| two component response regulator [Agrobacterium vitis S4] gi|221738246|gb|ACM39142.1| two component response regulator [Agrobacterium vitis S4] Length = 229 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 23/190 (12%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFL------IGKGEKVLELPRIIRAHSQVPLIGISD 80 EGF+ L ++ + A D A + + I G VL+ IR S++P++ ++ Sbjct: 24 EGFDVLSTDDGAKGLAFVDSGATDIIVLDVMMPIMNGVDVLQ---NIRKSSEIPIVMLTA 80 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR-----VFS 135 + + D G DD V+KP E++AR+ AI RR + + P++ ++ Sbjct: 81 RGDDKDRITGLDLGADDYVSKPCSPGELVARLRAILRRTGKTPPEHPSQPLKSGELVLYP 140 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL----FDEAVEENVVE 191 R + GE L E +LE L+ N GK V+K I +++G FD ++ Sbjct: 141 TSRQAHINGEALALTGTEYNLLELLVRNGGKVVSKHDISQSVFGRPLTPFDRR-----ID 195 Query: 192 SHISKLRKKL 201 H+S +R+KL Sbjct: 196 VHLSSIRQKL 205 >gi|218779424|ref|YP_002430742.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218760808|gb|ACL03274.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 236 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 93/216 (43%), Gaps = 32/216 (14%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPL 75 EGF ++ ++ LQ A+E F + V+ E+ + IRAHS VP+ Sbjct: 27 EGFQTIPAKDGLQ--------AVEMFAEATPDLVILDILMPEMDGTEVCKKIRAHSDVPI 78 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--------- 126 I +S + + G DD V KP RE++ARV A RR A Sbjct: 79 IFLSSKDDEIDRILGLELGGDDYVTKPFSPRELIARVKARLRRRLTEAKPAVSLQEKLGA 138 Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E G +R+ D R L RE RIL+ LM K + ++ YG D Sbjct: 139 ILEKGRLRLDVDARIVSWDSVRVELTHREFRILQTLMGYPEKIFTREELIDGAYGR-DHF 197 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V + ++SHI +RKKL +G + + + +GY + Sbjct: 198 VSDRTIDSHIKSVRKKL-AAVGGEAIRTAHGVGYQL 232 >gi|15833161|ref|NP_311934.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H7 str. Sakai] gi|168747469|ref|ZP_02772491.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4113] gi|168753991|ref|ZP_02778998.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4401] gi|168760182|ref|ZP_02785189.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4501] gi|168767044|ref|ZP_02792051.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4486] gi|168773322|ref|ZP_02798329.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4196] gi|168781897|ref|ZP_02806904.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4076] gi|168785895|ref|ZP_02810902.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC869] gi|168797613|ref|ZP_02822620.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC508] gi|191167555|ref|ZP_03029367.1| transcriptional regulatory protein QseB [Escherichia coli B7A] gi|193062151|ref|ZP_03043247.1| transcriptional regulatory protein QseB [Escherichia coli E22] gi|193067451|ref|ZP_03048419.1| transcriptional regulatory protein QseB [Escherichia coli E110019] gi|194426360|ref|ZP_03058915.1| transcriptional regulatory protein QseB [Escherichia coli B171] gi|195937167|ref|ZP_03082549.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H7 str. EC4024] gi|208807848|ref|ZP_03250185.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4206] gi|208813501|ref|ZP_03254830.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4045] gi|208820089|ref|ZP_03260409.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4042] gi|209398732|ref|YP_002272499.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4115] gi|209920497|ref|YP_002294581.1| DNA-binding transcriptional regulator QseB [Escherichia coli SE11] gi|217327973|ref|ZP_03444056.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. TW14588] gi|218555595|ref|YP_002388508.1| DNA-binding transcriptional regulator QseB [Escherichia coli IAI1] gi|218696731|ref|YP_002404398.1| DNA-binding transcriptional regulator QseB [Escherichia coli 55989] gi|254794977|ref|YP_003079814.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H7 str. TW14359] gi|256019057|ref|ZP_05432922.1| DNA-binding transcriptional regulator QseB [Shigella sp. D9] gi|260845779|ref|YP_003223557.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O103:H2 str. 12009] gi|260857158|ref|YP_003231049.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O26:H11 str. 11368] gi|260869779|ref|YP_003236181.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O111:H- str. 11128] gi|261228037|ref|ZP_05942318.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli O157:H7 str. FRIK2000] gi|261254893|ref|ZP_05947426.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O157:H7 str. FRIK966] gi|291284403|ref|YP_003501221.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli O55:H7 str. CB9615] gi|300818789|ref|ZP_07098995.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300821609|ref|ZP_07101755.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300923683|ref|ZP_07139710.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|307310347|ref|ZP_07589995.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|309793589|ref|ZP_07688015.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|331654630|ref|ZP_08355630.1| transcriptional regulatory protein QseB [Escherichia coli M718] gi|331669956|ref|ZP_08370801.1| transcriptional regulatory protein QseB [Escherichia coli TA271] gi|331679095|ref|ZP_08379767.1| transcriptional regulatory protein QseB [Escherichia coli H591] gi|332280158|ref|ZP_08392571.1| transcriptional regulatory protein qseB [Shigella sp. D9] gi|21759373|sp|Q8XBS3|QSEB_ECO57 RecName: Full=Transcriptional regulatory protein qseB gi|13363379|dbj|BAB37330.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. Sakai] gi|187771006|gb|EDU34850.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4196] gi|188017926|gb|EDU56048.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4113] gi|189000655|gb|EDU69641.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4076] gi|189358454|gb|EDU76873.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4401] gi|189363668|gb|EDU82087.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4486] gi|189369277|gb|EDU87693.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4501] gi|189374171|gb|EDU92587.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC869] gi|189379675|gb|EDU98091.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC508] gi|190902412|gb|EDV62149.1| transcriptional regulatory protein QseB [Escherichia coli B7A] gi|192932371|gb|EDV84969.1| transcriptional regulatory protein QseB [Escherichia coli E22] gi|192959408|gb|EDV89843.1| transcriptional regulatory protein QseB [Escherichia coli E110019] gi|194415668|gb|EDX31935.1| transcriptional regulatory protein QseB [Escherichia coli B171] gi|208727649|gb|EDZ77250.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4206] gi|208734778|gb|EDZ83465.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4045] gi|208740212|gb|EDZ87894.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4042] gi|209160132|gb|ACI37565.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. EC4115] gi|209759568|gb|ACI78096.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209759570|gb|ACI78097.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209759572|gb|ACI78098.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209759574|gb|ACI78099.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209759576|gb|ACI78100.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209913756|dbj|BAG78830.1| two-component response regulator [Escherichia coli SE11] gi|217320340|gb|EEC28765.1| transcriptional regulatory protein QseB [Escherichia coli O157:H7 str. TW14588] gi|218353463|emb|CAU99558.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli 55989] gi|218362363|emb|CAQ99987.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli IAI1] gi|254594377|gb|ACT73738.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli O157:H7 str. TW14359] gi|257755807|dbj|BAI27309.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O26:H11 str. 11368] gi|257760926|dbj|BAI32423.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O103:H2 str. 12009] gi|257766135|dbj|BAI37630.1| DNA-binding response regulator QseB in two-component regulatory system with QseC [Escherichia coli O111:H- str. 11128] gi|290764276|gb|ADD58237.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli O55:H7 str. CB9615] gi|300420050|gb|EFK03361.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300525747|gb|EFK46816.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300528574|gb|EFK49636.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|306909242|gb|EFN39737.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|308122546|gb|EFO59808.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|315062336|gb|ADT76663.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli W] gi|320189376|gb|EFW64035.1| Two-component system response regulator QseB [Escherichia coli O157:H7 str. EC1212] gi|320201937|gb|EFW76512.1| Two-component system response regulator QseB [Escherichia coli EC4100B] gi|320640099|gb|EFX09671.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H7 str. G5101] gi|320645396|gb|EFX14405.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H- str. 493-89] gi|320650708|gb|EFX19165.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H- str. H 2687] gi|320656403|gb|EFX24310.1| DNA-binding transcriptional regulator QseB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661775|gb|EFX29183.1| DNA-binding transcriptional regulator QseB [Escherichia coli O55:H7 str. USDA 5905] gi|320666927|gb|EFX33903.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H7 str. LSU-61] gi|323154721|gb|EFZ40920.1| transcriptional regulatory protein qseB [Escherichia coli EPECa14] gi|323163077|gb|EFZ48910.1| transcriptional regulatory protein qseB [Escherichia coli E128010] gi|323173733|gb|EFZ59362.1| transcriptional regulatory protein qseB [Escherichia coli LT-68] gi|323178730|gb|EFZ64306.1| transcriptional regulatory protein qseB [Escherichia coli 1180] gi|323377078|gb|ADX49346.1| two component transcriptional regulator, winged helix family [Escherichia coli KO11] gi|323946732|gb|EGB42752.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|324018133|gb|EGB87352.1| response regulator receiver domain protein [Escherichia coli MS 117-3] gi|324119636|gb|EGC13517.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|326337729|gb|EGD61563.1| Two-component system response regulator QseB [Escherichia coli O157:H7 str. 1125] gi|326347293|gb|EGD71018.1| Two-component system response regulator QseB [Escherichia coli O157:H7 str. 1044] gi|331048012|gb|EGI20089.1| transcriptional regulatory protein QseB [Escherichia coli M718] gi|331062869|gb|EGI34783.1| transcriptional regulatory protein QseB [Escherichia coli TA271] gi|331073160|gb|EGI44483.1| transcriptional regulatory protein QseB [Escherichia coli H591] gi|332102510|gb|EGJ05856.1| transcriptional regulatory protein qseB [Shigella sp. D9] Length = 219 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R Q P++ ++ +L+ ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 L---REWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + R + GE L +E +LE LM N G+ + + I +Y Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|299534866|ref|ZP_07048195.1| response regulator [Lysinibacillus fusiformis ZC1] gi|298729711|gb|EFI70257.1| response regulator [Lysinibacillus fusiformis ZC1] Length = 221 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 2/131 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP E+LAR+ AI RR S ++ + ++++ D R + L Sbjct: 91 LDAGADDYVVKPFKMEELLARIRAILRRKNKSIHQIIQIDDLKLYLDSRTLYKDNQEILL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 + E +LEYL N+G + + QI++ ++G FD + N +++ + +RKK+ Sbjct: 151 TKNEFLLLEYLFINKGIVLTREQIYTQVWG-FDHEMTNNNLDALVKLVRKKIDYNRSKSI 209 Query: 210 VDSKRFLGYSI 220 +++ R +GY + Sbjct: 210 IENIRGIGYRV 220 >gi|160898196|ref|YP_001563778.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160363780|gb|ABX35393.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 221 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 74/146 (50%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R R V ++ SD LQ L + G DD + KP E++AR+ AI Sbjct: 59 GIEVLRAWRAQRKALAVLILTASD--GLQNRLLGLNEGADDYLAKPFEPEELVARMRAIV 116 Query: 117 RRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR ++N G + +D R+ +QGE L RE +LE L++ G V K++I S Sbjct: 117 RRSHGGASNLLTVGALSFNTDTRELFLQGERLALSPREAALLELLISAPGAAVPKSRIIS 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 + ++ N VE +I KLR+KL Sbjct: 177 TMSS-WEANFSANAVEIYILKLRRKL 201 >gi|325521888|gb|EGD00601.1| DNA-binding response regulator [Burkholderia sp. TJI49] Length = 220 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + + P+I ++ ++ + D+G DD + KP E+LAR+ + RR S Sbjct: 63 LARLRQRNDPTPVIIVTARDTIGDRVAGLDAGADDYLVKPFALEELLARIRVVSRRQTGS 122 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++G +R+ + E P+ RE ILE L+ V + Q+ +YG + Sbjct: 123 VQTVFQSGTLRLDPAQHRVWLGTEEVPVTAREFAILEELIRRPNGIVTREQLEECLYG-W 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E VE N V+ HI LR+ KLG D + + R +GY I Sbjct: 182 NEEVESNTVQVHIHHLRQ----KLGTDVIVTVRGIGYRI 216 >gi|319651813|ref|ZP_08005938.1| PhoP protein [Bacillus sp. 2_A_57_CT2] gi|317396465|gb|EFV77178.1| PhoP protein [Bacillus sp. 2_A_57_CT2] Length = 238 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 14/140 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----------TGPIRVFSDGRDPEVQ 143 G DD + KP RE++ARV AI RR + AE G +++F + + Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRTQFVPEAAEEKTEDGDSLRIGGLKIFPQHYEAYFE 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 E+ L +E +L YL N+ + + + Q+ SA++ +D A + +V+ HIS LR+K+ Sbjct: 156 DELLELTPKEFELLLYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLREKIET 214 Query: 204 KLGFDPVDSK--RFLGYSID 221 PV K R LGY ++ Sbjct: 215 NTK-KPVYIKTIRGLGYKLE 233 >gi|311897834|dbj|BAJ30242.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 255 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 7/139 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNR 125 IRA S P+I +++ S + +G DD + KP E+LAR+ A+ RR + V +R Sbjct: 101 IRAVSDTPIIAVTERGSELDRVLGLQAGADDYMVKPYGFHELLARIGAVMRRFRPVRTSR 160 Query: 126 A-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + GP+R+ + R + GE L R+E +L L A G V++ Q+ + ++ D+A Sbjct: 161 TIDHGPLRIDASTRRVTLHGEWVELTRKEFDLLHALAAQPGAVVSRRQLMTQVW---DDA 217 Query: 185 VEEN--VVESHISKLRKKL 201 +++H+S LR KL Sbjct: 218 WSPKGRTLDTHVSSLRGKL 236 >gi|303232881|ref|ZP_07319565.1| putative Sensory transduction protein regX3 [Atopobium vaginae PB189-T1-4] gi|302481071|gb|EFL44147.1| putative Sensory transduction protein regX3 [Atopobium vaginae PB189-T1-4] Length = 236 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 13/171 (7%) Query: 63 LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + R +R+++Q +P+I ++ + + D+G DD + KP E+L+R+ A+ RR Sbjct: 63 ITRTLRSNAQWSHIPIIMLTAKTTEMDMIRGLDNGADDYIRKPFSVMELLSRIRALLRRA 122 Query: 120 KVSNNRA--ETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + RV + DP V E L +E +L YLM + G + Sbjct: 123 QTPAQMPADKYSMCRVGAIMLDPARHFVCVHDEPVNLTHKEYDLLHYLMLHEGLVFTRDM 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + A++G FD E V+ HI LR+KL + + V + R +GY + N Sbjct: 183 LMQAVWG-FDYEGESRTVDMHIKTLRQKLGDAACY--VQTVRGVGYCVKSN 230 >gi|229154965|ref|ZP_04283079.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228628523|gb|EEK85236.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 209 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 49 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 108 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 109 KQEQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 168 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 169 G-YDYAGSTRTVDTHVKTMRLKL 190 >gi|259503600|ref|ZP_05746502.1| DNA-binding response regulator [Lactobacillus antri DSM 16041] gi|259168424|gb|EEW52919.1| DNA-binding response regulator [Lactobacillus antri DSM 16041] Length = 228 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 95/204 (46%), Gaps = 11/204 (5%) Query: 27 EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+++ L+ L+++ +D I L+ +E+ R +R P+I ++ S Sbjct: 24 EGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNGIEVARRVRELKDTPIIIMTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ 143 + + D G DD + KP E+LARV A+ RR+ + + ++ V E + Sbjct: 84 VIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISIEDGNSKEHQTTVNYKDLTIEKE 143 Query: 144 G-------EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 EV L +RE +L LM N +++ ++ S ++G +D VE NVV+ +I Sbjct: 144 NRIVRRGDEVINLTKREYELLLILMENINVVMSRKELLSKVWG-YDSKVETNVVDVYIRY 202 Query: 197 LRKKLRNKLGFDPVDSKRFLGYSI 220 LR K+ + + R GY I Sbjct: 203 LRNKIDRPGEKSYIQTVRGTGYVI 226 >gi|30023144|ref|NP_834775.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|296505525|ref|YP_003667225.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|29898704|gb|AAP11976.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|296326577|gb|ADH09505.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 225 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 7/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++D S + + +G DD + KP E++ARV AI RR Sbjct: 62 EICRQIRLVKTTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 120 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + E + +F D V+ G+ L +RE +L +L+ N+ +++ + + Sbjct: 121 CNQQKEINFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ V NVV+ +I +RKKL+ + + + GYS+ Sbjct: 181 VWG-YNIVVNPNVVDLYIGYVRKKLKCEKKERYIQTIHGRGYSM 223 >gi|315655447|ref|ZP_07908347.1| subtilin biosynthesis regulatory protein SpaR [Mobiluncus curtisii ATCC 51333] gi|315490387|gb|EFU80012.1| subtilin biosynthesis regulatory protein SpaR [Mobiluncus curtisii ATCC 51333] Length = 224 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 3/162 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R +R P++ ++ + + G DD + KP E+++RV A RR K Sbjct: 60 FELCRNVREKVDCPILFLTAKTTETDVIQGLAMGADDYIRKPFTPSELVSRVNAHIRREK 119 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ T G IR R+ V+ E+ L + E I E ++ +RG+ ++ Q+ G Sbjct: 120 RLHHAVLTDGEIRFLLAAREVRVRDEIVTLTKMEYEICELMIRHRGQVFSRKQLLDQAGG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E+ VVE HI +RKK DP+ + +GY D Sbjct: 180 YWTESEPAAVVE-HIKNIRKKF-APYQVDPIKTIWGIGYKWD 219 >gi|314934421|ref|ZP_07841780.1| DNA-binding response regulator [Staphylococcus caprae C87] gi|313652351|gb|EFS16114.1| DNA-binding response regulator [Staphylococcus caprae C87] Length = 225 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/191 (25%), Positives = 89/191 (46%), Gaps = 2/191 (1%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFF 91 L EE L +E+V ++ G EL + ++ +P+I ++ +L F Sbjct: 33 LSGEEALHFLEKENVDIAIVGIMMNGINGFELCKTLKEDYDIPVIMLTARDALSDKERAF 92 Query: 92 DSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 SG DD V KP +E+L R+ A+ R ++ + + + G + + + V + LP Sbjct: 93 LSGTDDYVTKPFEVKELLFRIKAVLRSYQINAESELKLGNLTLNQPYMEISVDAKTINLP 152 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 +E ++L L++N + I I+G FD ++ V+ HI +LR+KL + Sbjct: 153 NKEFQLLFLLVSNPKHIFTRNDIIEKIWG-FDYEGDDRTVDVHIKRLRQKLSRLGASISI 211 Query: 211 DSKRFLGYSID 221 + R GY ++ Sbjct: 212 HTVRGQGYKVN 222 >gi|308084100|gb|ADO13166.1| QseB [Edwardsiella tarda] Length = 219 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 96/204 (47%), Gaps = 11/204 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 +LI+D L+ DG A G +L+ F + SA D ++ L G G ++L Sbjct: 4 LLIEDDRLIGDGIKAGLNKMGFTLDWFTDGQLGMTALESAPYDAVILDLSLPGIDGLEIL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R A P++ ++ +L+ + G DD + KP E+ AR+ A+ RR Sbjct: 64 R--RWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRR--- 118 Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ +A+T G + + + G PL +E +LE L+ N G+ + ++ I + Sbjct: 119 NHGQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLIEEKL 178 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 Y +D+ V N VE HI LR+KL Sbjct: 179 YS-WDDDVSSNAVEVHIHHLRRKL 201 >gi|311108366|ref|YP_003981219.1| response regulator 14 [Achromobacter xylosoxidans A8] gi|310763055|gb|ADP18504.1| response regulator 14 [Achromobacter xylosoxidans A8] Length = 220 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFP 148 D+G DD + KP H E+LARV A+ RR S+ A+ GP+ + + V G+ Sbjct: 91 IDAGADDYLTKPFHMEELLARVRALLRR-SSSHASAQWRCGPLMLDTRLAKVTVDGQALS 149 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L E ++L LM G+ ++++++ +Y D + N ++ I +LRKKL D Sbjct: 150 LTSHEFKVLAVLMQRAGEVISRSELTEHVYA-QDHDRDSNTIDVFIGRLRKKLPP----D 204 Query: 209 PVDSKRFLGYSI 220 +++ R LGY + Sbjct: 205 TIETVRGLGYRL 216 >gi|218232438|ref|YP_002369894.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228961333|ref|ZP_04122949.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229130349|ref|ZP_04259307.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|218160395|gb|ACK60387.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228653048|gb|EEL08928.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|228798341|gb|EEM45338.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 220 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 7/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++D S + + +G DD + KP E++ARV AI RR Sbjct: 57 EICRQIRLVKTTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 115 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + E + +F D V+ G+ L +RE +L +L+ N+ +++ + + Sbjct: 116 CNQQKEINFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 175 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ V NVV+ +I +RKKL+ + + + GYS+ Sbjct: 176 VWG-YNIVVNPNVVDLYIGYVRKKLKCEKKERYIQTIHGRGYSM 218 >gi|170766034|ref|ZP_02900845.1| transcriptional regulatory protein QseB [Escherichia albertii TW07627] gi|170125180|gb|EDS94111.1| transcriptional regulatory protein QseB [Escherichia albertii TW07627] Length = 219 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 25/229 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D L+ DG G+S GF+ F E Q + +A ++ L Sbjct: 3 ILLIEDDMLIGDGI-----KTGLSKMGFSVDWFTEGRQGKEALYSAPYDAVILD-----L 52 Query: 62 ELPR-----IIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 LPR I+R + P++ ++ +L ++ G DD + KP E+ AR+ Sbjct: 53 TLPRMDGRDILREWRNKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARL 112 Query: 113 AAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A+ RR +++N G + + R + GE L +E +LE LM N G+ + + Sbjct: 113 EALMRRTNGLASNELRHGNVMLDPGKRIATLAGESLTLKPKEFALLELLMRNVGRVLPRK 172 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I +Y +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 173 LIEEKLY-TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|164688486|ref|ZP_02212514.1| hypothetical protein CLOBAR_02131 [Clostridium bartlettii DSM 16795] gi|164602899|gb|EDQ96364.1| hypothetical protein CLOBAR_02131 [Clostridium bartlettii DSM 16795] Length = 224 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 3/151 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 H + P+I ++ L+ F G DD + KPI E++ R+ AI RR K+ N+ T Sbjct: 70 GHCETPIIIVTAKEQLEDKKKGFSIGADDYMVKPIDFEELILRIGAILRRSKIVNDHKIT 129 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + + GE LP++E +L L+++ + Q+ I+G+ + +E Sbjct: 130 IGNTVLDYNSLSVTSNGECNTLPKKEFYLLFKLVSSPDTIFTRRQLLDEIWGM-ESMADE 188 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ HI ++R++ R F+ V + R LGY Sbjct: 189 RTVDVHIKRIRERYRASNDFEIV-TVRGLGY 218 >gi|148269659|ref|YP_001244119.1| two component transcriptional regulator [Thermotoga petrophila RKU-1] gi|147735203|gb|ABQ46543.1| two component transcriptional regulator, winged helix family [Thermotoga petrophila RKU-1] Length = 223 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 2/148 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130 P++ ++ ++ + + G DD + KP RE++ARV A+ RR S + + G Sbjct: 72 NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + G+ L ++E +ILEYL+ N+ + V K ++ ++ FD+ V +V+ Sbjct: 132 LILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS-FDDEVFSDVL 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 SHI LRKK+ + + R +GY Sbjct: 191 RSHIKNLRKKVDKGFKRKIIHTVRGIGY 218 >gi|215486384|ref|YP_002328815.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O127:H6 str. E2348/69] gi|312966386|ref|ZP_07780608.1| transcriptional regulatory protein phoP [Escherichia coli 2362-75] gi|215264456|emb|CAS08819.1| DNA-binding response regulator PhoP in two-component regulatory system with PhoQ [Escherichia coli O127:H6 str. E2348/69] gi|312288839|gb|EFR16737.1| transcriptional regulatory protein phoP [Escherichia coli 2362-75] Length = 223 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 105/218 (48%), Gaps = 5/218 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ + ++ + D++ ++ L E L Sbjct: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGL--PDEDGLS 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R++ +P++ ++ S Q ++ +G DD V KP H E++AR+ A+ RR Sbjct: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ + EV L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E E + ++ + +LRKK++ + D + + R GY Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPQDVITTVRGQGY 218 >gi|158340654|ref|YP_001521822.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310895|gb|ABW32508.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 247 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 9/167 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKV 121 R IR S+VP+I ++ + + + G DD + KP +E+ +RV I RR LK Sbjct: 76 RAIRKTSRVPIIMLTALSEVGDRVTGLEMGADDYMVKPFSPKELESRVRCIIRRMGSLKP 135 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N R G +R+ ++ R E L E +LE L + G V++ ++ + Sbjct: 136 FNYRVTGVLNIGSLRIDTNKRKVFRGQERIILTHMEFSLLELLASTPGAVVSRQELLEKV 195 Query: 178 YGLFDEA-VEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +G + V+ VV+ H+S+LR KL+ N++G + + + R +GY++ Sbjct: 196 WGYSNGTIVDSRVVDVHVSRLRNKLKANQVGTELIHTIRGVGYTLKC 242 >gi|148261933|ref|YP_001236060.1| two component transcriptional regulator [Acidiphilium cryptum JF-5] gi|326405441|ref|YP_004285523.1| phosphate regulon transcriptional regulatory protein PhoB [Acidiphilium multivorum AIU301] gi|146403614|gb|ABQ32141.1| two component transcriptional regulator, winged helix family [Acidiphilium cryptum JF-5] gi|325052303|dbj|BAJ82641.1| phosphate regulon transcriptional regulatory protein PhoB [Acidiphilium multivorum AIU301] Length = 236 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 11/158 (6%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 +P+I ++ Q T+ ++G DD + KP ++AR+ A+ RR + RA P+ Sbjct: 80 HLPVIMLTARAEDQDTVRGLETGADDYITKPFSPEALIARIRALLRRSGTAPARA---PL 136 Query: 132 RVFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 VF D DP G V L E R+LE+ M + + ++ + +A++G D V Sbjct: 137 -VFHDLELDPTTHRVTRGGRVLHLGPTEFRLLEFFMRHPRRVFSREDVLNAVWG-RDIHV 194 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E V+ HI +LRK + + D V + R GY++D + Sbjct: 195 EPRTVDVHIRRLRKSINAETDIDLVRTVRAAGYALDLD 232 >gi|331266563|ref|YP_004326193.1| DNA-binding response regulator CiaR [Streptococcus oralis Uo5] gi|326683235|emb|CBZ00853.1| DNA-binding response regulator CiaR [Streptococcus oralis Uo5] Length = 224 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K + N G + V + +V+ L Sbjct: 91 FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGDVIVNLSTNEVKVEDTPVEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + KTQIF ++G FD +VVE ++SK+RKKL+ + Sbjct: 151 LGKEFELLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTAFAEN 209 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 210 LQTLRSVGY 218 >gi|325970798|ref|YP_004246989.1| transcriptional regulator [Spirochaeta sp. Buddy] gi|324026036|gb|ADY12795.1| two component transcriptional regulator, winged helix family [Spirochaeta sp. Buddy] Length = 241 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 14/138 (10%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD--------GRDPEV 142 F+ G DD V KP +E++ RV A++RR+ VS + +G + V Sbjct: 91 FELGADDYVCKPFSSKELVLRVHALFRRIDVSVSAFRSGSTWTLGNSVLQLDEVSHLFNV 150 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--ENVVESHISKLRKK 200 G PL E RI+ YL++N G + ++QI FD + E + +V++H+ +R K Sbjct: 151 DGHQVPLTAAEWRIMSYLVSNSGILITRSQILEHC---FDYSFESYDRIVDTHVKNMRAK 207 Query: 201 LRNKLGFDPVDSKRFLGY 218 + LG +++ R GY Sbjct: 208 M-GPLGSQWIETVRGYGY 224 >gi|291548048|emb|CBL21156.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 226 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 76/145 (52%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +S+VP+I ++ + L F+ GVD+ ++KP + ++ARV AI RR Sbjct: 65 EVCREIRKNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTGQ 124 Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 SN G I + V + L +E +L Y + N G +++ +I ++++ Sbjct: 125 SNPDEILSAGGIVIDKAAHQATVDDKPMDLSFKEFELLTYFLENEGIALSREKILNSVWN 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR K+ +K Sbjct: 185 -YDYFGDARTIDTHVKKLRSKMGDK 208 >gi|295400059|ref|ZP_06810039.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110691|ref|YP_003989007.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294977838|gb|EFG53436.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215792|gb|ADP74396.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 225 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 5/180 (2%) Query: 28 GFNSLEFEEW---LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84 GF+ LE E+ L A V A+ ++ L IR S VP++ ++ Sbjct: 29 GFSCLEAEDGDKALDVLANVKVDAVLIDIMMPKMDGFSLCERIRWQSDVPILFLTARGEE 88 Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQ 143 + G DD + KP E++AR+ A+ RR N+ GP+ + GR V Sbjct: 89 WDKVKGLKLGGDDYIVKPFSPGELIARIEAVMRRAYHAGNHDLSFGPLTIDERGRKVTVD 148 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 GE L +E +L +L +RG+ ++ ++ + ++G +D V++HI LR KL+ Sbjct: 149 GEPLILTLKEFDLLLFLAKHRGQVFSREELLAKVWG-YDYTGNVRTVDTHIKTLRMKLKQ 207 >gi|228951779|ref|ZP_04113878.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229177806|ref|ZP_04305179.1| Two-component response regulator [Bacillus cereus 172560W] gi|228605597|gb|EEK63045.1| Two-component response regulator [Bacillus cereus 172560W] gi|228807901|gb|EEM54421.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 218 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 58 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199 >gi|222099706|ref|YP_002534274.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359] gi|221572096|gb|ACM22908.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359] Length = 251 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 30/216 (13%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY L DG EE L+ + EDV ++ G EL R IR+ Sbjct: 35 LAKEGYDVLKAYDG-----------EEALKLANEEDVDMFIVDIMLPGMDGFELVRKIRS 83 Query: 70 ---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 + P+I +S + + G DD + KP RE+LARV AI+RRL + Sbjct: 84 MEKYRNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRLSAAVQSK 143 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRI---------LEYLMANRGKRVAKTQIFSAI 177 E P ++ + +D E+ E + + R +++ L +L N GK ++ + + Sbjct: 144 EERPKKITA--KDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDVLLDKL 201 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +G +D + V+ HI +LR K+ DP + K Sbjct: 202 WG-YDYYGDTRTVDVHIRRLRTKIEE----DPSNPK 232 >gi|325275465|ref|ZP_08141393.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324099396|gb|EGB97314.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 240 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 14/188 (7%) Query: 28 GFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84 G+N LE E+ AR V + L+ GE L L R ++A + +I +S S Sbjct: 26 GYNVLEAADGEQMRAQMARHTVDLVVLDLMLPGEDGLSLCRQLQATPGLAVIMLSAKGST 85 Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNNRAETGPIRVFSDGRDPE 141 + + G DD + KP RE++AR+ A+ R RL+ ++F+ R Sbjct: 86 LDRIIGLEVGADDYLAKPFEPRELIARIKAVLRRPQRLETQAQGTAGADAQLFAGFRLEH 145 Query: 142 VQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 V+ G+ PLPR + R+L L+ + V++ Q+ + +G D ++ V+ + Sbjct: 146 VKRLLTRPDGQTLPLPRSDYRVLRELLEANNRVVSRDQLTRSAFG-RDHLPDDRSVDMCV 204 Query: 195 SKLRKKLR 202 S+LR+ LR Sbjct: 205 SRLRQHLR 212 >gi|317402633|gb|EFV83192.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 223 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 3/134 (2%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127 A + P++ ++ ++ +D D G DD + KP RE+ AR+ A+ RR +++ Sbjct: 69 AGLEAPVLVMTARSEIEDKIDMLDLGADDYLVKPFDLRELEARLRALLRRPAGQTSSVTA 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + + R + G L RRE R+LE L+ G+ VAK ++ + ++ L D ++ Sbjct: 129 YGNLSLDLANRHVTLAGAPLELGRREFRLLEILLGKLGQTVAKERLMNQLFDLDDGSL-- 186 Query: 188 NVVESHISKLRKKL 201 N +E IS+LRKKL Sbjct: 187 NALELLISRLRKKL 200 >gi|262372418|ref|ZP_06065697.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262312443|gb|EEY93528.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 219 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 16/165 (9%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L RI H +P+I I+ + ++ D G +D + KP + E+ AR+ A R+ + Sbjct: 63 LKRIREQHLLIPVIFITAKDHIHDRVEGLDLGANDYLVKPFNLEELSARIRAQLRQFQ-- 120 Query: 123 NNRAETGPIRVFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +TG F+D + DP + GE L +E +IL LM N V + Q+ + Sbjct: 121 ---KQTGAYLCFADLKLDPNAKTVLKAGETVNLTAKEFQILYKLMQNPNHIVTREQLEES 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +Y + E +E N +E I ++RKK+ ++L + + R LGY ++ Sbjct: 178 LYA-WGEEIESNAIEVFIYQIRKKIGSQL----IKTIRGLGYRMN 217 >gi|264676960|ref|YP_003276866.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|262207472|gb|ACY31570.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] Length = 227 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 5/157 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A S VP++ +S + + G DD + KP RE+LAR A+ RR + A Sbjct: 69 AGSIVPVLVLSARGEEMDKVLGLELGADDYLTKPFSPRELLARTRALLRRSRQFQPAAPA 128 Query: 129 GPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 R G+ + + L RRE ++L+ L+ G+ +++ + I+GL E+ Sbjct: 129 QLARALQIDEQGQRALIHSKALDLTRREYQLLQSLVNAAGRILSRDALLEQIWGLDSEST 188 Query: 186 EENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + V++HI LR KLR +L + + + R LGYS++ Sbjct: 189 DRT-VDTHIKTLRAKLRERLPDQELIVTHRGLGYSLN 224 >gi|196228884|ref|ZP_03127750.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196227165|gb|EDY21669.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 229 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 29/217 (13%) Query: 16 IALFGDDGVSLEGF-NSLEFEEW-LQSSAREDVSAIEAFLIGKGEKVL----------EL 63 I + DD V L G ++ EFE + +Q++ D A I VL E+ Sbjct: 7 ILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYEI 66 Query: 64 PRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R +R ++P+I ++ + G DD V KP +E+LARV A RR Sbjct: 67 CRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRR---- 122 Query: 123 NNRAETGPIRVFSDGRDPEV------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R +TG + F D R G+ PL +E +L +L+ N G+ +++ +I S Sbjct: 123 -QRKQTGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMST 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 ++G + V I + LRNK+ DP + + Sbjct: 182 VWG-----YDSRVTPRSIDRFVNALRNKIEPDPAEPR 213 >gi|206967625|ref|ZP_03228581.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206736545|gb|EDZ53692.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 223 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 63 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 122 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 123 KQEQQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204 >gi|120555780|ref|YP_960131.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120325629|gb|ABM19944.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 222 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 13/167 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R +R + +P+I ++ + F+ G DD + KP + RE++AR+ A+ RR+ Sbjct: 56 LDVLRQLRGKTHLPVILLTARGDETDRIVGFEVGADDYIPKPCNPRELVARLQALLRRI- 114 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIF 174 + + E R + D R Q ++ L E +L+ L+A+ G V KT + Sbjct: 115 AWDQKTEVDASRTYGDLRVEPGQRRIYQNDAPVELTGTEYEVLQVLLAHAGSVVRKTDLM 174 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYS 219 G EA + ++ HIS LRKKL N DP +++ R LGYS Sbjct: 175 QWALGRRLEAYDRT-LDMHISNLRKKLGND---DPPRIETVRGLGYS 217 >gi|75674709|ref|YP_317130.1| phosphate regulon transcriptional regulatory protein phoB [Nitrobacter winogradskyi Nb-255] gi|74419579|gb|ABA03778.1| two component transcriptional regulator, winged helix family [Nitrobacter winogradskyi Nb-255] Length = 234 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 10/168 (5%) Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +RA S Q+P+I ++ + +G DD V KP E+LARV ++ R Sbjct: 62 IELCRRLRARSDTRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLLR 121 Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R S R + G I + D G L E R+LE+ + + G+ ++ Q+ Sbjct: 122 R--ASPARLASVLSFGDIELDRDRHRVVRSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 180 LDSVWG-RDVYIDERTVDVHIGRLRKLLNPDGELDPIRTVRGAGYALD 226 >gi|331091615|ref|ZP_08340449.1| hypothetical protein HMPREF9477_01092 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403372|gb|EGG82931.1| hypothetical protein HMPREF9477_01092 [Lachnospiraceae bacterium 2_1_46FAA] Length = 224 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 2/171 (1%) Query: 52 FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 +I K + + L I + +P++ ++ ++ + DSG +D ++KP H E+LAR Sbjct: 52 IMIPKIDGITVLKTIRSCGNSIPVLLLTAKSEVEDKVLGLDSGANDYLSKPFHAEELLAR 111 Query: 112 VAAIYRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + A+ R N+ + + G I + + + L +E ++LE +M N ++ Sbjct: 112 IRAMTRTQTAQNDSKLQIGNIILDRATFELSTPSGSYNLANKEFQMLELMMLNPNHLISA 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + I+G +D E NVV +IS LRKKL + R +GYS++ Sbjct: 172 EKFIENIWG-YDSEAEMNVVWVYISYLRKKLAALHANVRIKVTRNVGYSLE 221 >gi|261419917|ref|YP_003253599.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319766731|ref|YP_004132232.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261376374|gb|ACX79117.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317111597|gb|ADU94089.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 226 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 7/152 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R IR+ S VP++ ++ + G DD V KP E+LAR+ A+ RR Sbjct: 62 ETCRRIRSFSNVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVLRR--T 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R+ R+ D + V+ E P L +E IL L+ + + ++ QI ++++G Sbjct: 120 AGGRSAIRAARLVWDEEEHTVRYEDKPIALTPKEFAILGLLLKHPNQVFSRGQIIASLWG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 + EE V+SH+ +R+KLR K GF P D Sbjct: 180 YLAD-TEERTVDSHMKNIREKLR-KAGF-PAD 208 >gi|187731798|ref|YP_001881793.1| DNA-binding transcriptional regulator QseB [Shigella boydii CDC 3083-94] gi|187428790|gb|ACD08064.1| transcriptional regulatory protein QseB [Shigella boydii CDC 3083-94] Length = 219 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 L---REWREKGQREPVLILTARDALAERVEGLRQGADDYLCKPFALIEVAARLEALMRRT 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + R + GE L +E +LE LM N G+ + + I +Y Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|229068949|ref|ZP_04202243.1| Two-component response regulator [Bacillus cereus F65185] gi|229078583|ref|ZP_04211141.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228704727|gb|EEL57155.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228714233|gb|EEL66114.1| Two-component response regulator [Bacillus cereus F65185] Length = 218 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 58 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199 >gi|225376547|ref|ZP_03753768.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM 16841] gi|225211584|gb|EEG93938.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 17/169 (10%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +S +P+I +S + + G DD V KP + E++ARV + RR N A Sbjct: 67 IRENSSIPIIILSAKTEDSDKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQLGNAA 126 Query: 127 ETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E+G + + D ++ V GEV L E IL L+ N+GK + QI+ +I+ Sbjct: 127 ESGDSIYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIYESIWN 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSIDWN 223 D +N V HI +R+K+ +P + + +GY ID N Sbjct: 187 -EDAIGADNTVAVHIRHIREKIE----INPKEPRYLKVVWGVGYKIDKN 230 >gi|329910114|ref|ZP_08275240.1| Phosphate regulon transcriptional regulatory protein PhoB [Oxalobacteraceae bacterium IMCC9480] gi|327546267|gb|EGF31298.1| Phosphate regulon transcriptional regulatory protein PhoB [Oxalobacteraceae bacterium IMCC9480] Length = 231 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 89/170 (52%), Gaps = 7/170 (4%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G +L R A + +P+I ++ + + ++G DD + KP RE++AR+ + Sbjct: 62 GSGLTLLREWRSTAATAVLPVIMLTANGMDEDKVRGLNAGADDYITKPFSPRELVARIHS 121 Query: 115 IYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + RR + +R G I + ++ V L + E R+L++L+A+ + +++Q Sbjct: 122 LLRRNRADASRPGNIYGTIVIDTERHLVTVADVPVKLDQSEFRLLKFLVAHPARVFSRSQ 181 Query: 173 IFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++G DEA +EE V+ HI +LRK L G+ + + R +GY +D Sbjct: 182 LLDKVWG--DEAFLEERTVDVHIMRLRKSLGVAAGY--IKTVRSIGYLMD 227 >gi|229160351|ref|ZP_04288349.1| Two-component response regulator [Bacillus cereus R309803] gi|228623075|gb|EEK79903.1| Two-component response regulator [Bacillus cereus R309803] Length = 218 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 58 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEANGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199 >gi|205353035|ref|YP_002226836.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272816|emb|CAR37742.1| transcriptional regulatory protein PhoP, regulator of virulence determinants [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628114|gb|EGE34457.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 224 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P++ ++ Q ++ SG DD V KP H E++AR+ A+ RR +++ P Sbjct: 74 LPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSGLASQVINIPPF 133 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 +V R+ V EV L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 134 QVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 192 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +LRKK++ + D + + R GY Sbjct: 193 VLMGRLRKKIQAQYPHDVITTVRGQGY 219 >gi|192359014|ref|YP_001981290.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107] gi|190685179|gb|ACE82857.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107] Length = 227 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 17/163 (10%) Query: 65 RIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VS 122 R +RA + P++ ++ + Q + ++G DD + KP H E+ AR+ A+ RR + Sbjct: 64 RELRAKGRNFPILILTARGNWQDKVQGLEAGADDYLTKPFHPEELKARIHALLRRASGHA 123 Query: 123 NNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +++ GPI RV+ DG + E+ G E L YL + GK ++K ++ Sbjct: 124 SSQLNYGPITIDTSAKRVYRDGAEVELTG-------FEYNTLTYLAMHPGKNISKLELTE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y D + NV+E + +LRKKL + + ++R LGY Sbjct: 177 HLYAQ-DYDRDSNVIEVFVGRLRKKLDPDGSLNLISTQRGLGY 218 >gi|91779051|ref|YP_554259.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91691711|gb|ABE34909.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 223 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 6/150 (4%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPIR 132 P++ ++ + S++ + D G DD + KP E+ AR A+ RR A+ G + Sbjct: 74 PVLMLTAHGSVEERVRGLDLGADDYLAKPFALTELEARARALLRRSHGQEPLHAQCGTLL 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 S R + GE+ L RER +LE L+ G+ + K + I+GL DE+V + +E Sbjct: 134 YDSVDRGFTLDGELLALTPRERSVLEVLILRNGRAINKDTLSEKIFGL-DESVNADAIEI 192 Query: 193 HISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 ++ +LRKKL + +G + + R LGY ++ Sbjct: 193 YVHRLRKKLEHSSVG---IVTLRGLGYLLE 219 >gi|325276399|ref|ZP_08142172.1| DNA-binding response regulator [Pseudomonas sp. TJI-51] gi|324098466|gb|EGB96539.1| DNA-binding response regulator [Pseudomonas sp. TJI-51] Length = 220 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A + +P++ ++ +L + D+G DD + KP E+ AR+ A+ RR S Sbjct: 63 LRRVRGAGNSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRR---S 119 Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 RA E + + + QG L +E R+L L+A GK + ++ +Y Sbjct: 120 AGRAKVLIEHAGVMLDPATQQVHYQGLEVILTPKEYRLLHELLAQPGKVFTRERLTQLLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +DE E N +E HI LRKKL N L + + R +GY ++ Sbjct: 180 G-WDEEPESNTLEVHIYHLRKKLNNGL----IRTVRGIGYLVE 217 >gi|307822689|ref|ZP_07652920.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307736293|gb|EFO07139.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 225 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 + R+ + VP++ ++ Q ++ ++G DD + KP H+ E+ AR+ A+ RR V Sbjct: 63 IKRLRKDKVTVPILILTARSRWQEKVEGLEAGADDYLVKPFHYEELQARINALIRRSAGV 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 ++ I + + ++ V G L E ++LEYLM +G+ V+K+ + + IY Sbjct: 123 AHPVLTHDNIELDTVAQEVTVSGVKQELTAYEYKVLEYLMFRKGEVVSKSVLTAHIYDED 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + NV+E I +LRKKL P+++ R GY I Sbjct: 183 FDR--DSNVLEVFIGRLRKKLDPDGTRKPIETLRGRGYLI 220 >gi|262376401|ref|ZP_06069630.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] gi|262308540|gb|EEY89674.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] Length = 223 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 11/167 (6%) Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L L I + +P++ IS LQ +D + G DD + KP E+LAR+ A+ RR Sbjct: 61 ILVLKNIRQKFPNLPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARIHALIRRS 120 Query: 120 KVSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N +T G + + + G+ L RE IL ++ + K +K + Sbjct: 121 GLKNTGIDTNKKLSHGSLELDLEQHIALFNGQAIELSNREWSILMAMLNHPNKIFSKNDL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y FD V N VE +I LR KLG D + + R LGY + Sbjct: 181 EDKLYD-FDSDVSSNTVEVYIHHLRA----KLGKDFIRTIRGLGYRL 222 >gi|169829556|ref|YP_001699714.1| alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] gi|168994044|gb|ACA41584.1| Alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] Length = 238 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 11/118 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAET-------GPIRVFSDGRDPEVQ 143 G DD + KP RE+LARV A+ RR VS+ + E G +RVF + + +Q Sbjct: 96 GADDYMTKPFSPREVLARVKAVLRRFTQNVVSDEKDEPQEKMFEFGQLRVFPERFEVFLQ 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E +E +L YL+ N+ + + + Q+ SA++ +D A + +V+ HIS LR K+ Sbjct: 156 DEALEFTPKEFELLIYLLENKNRVLTRDQLLSAVWK-YDFAGDTRIVDVHISHLRDKI 212 >gi|146306206|ref|YP_001186671.1| two component heavy metal response transcriptional regulator [Pseudomonas mendocina ymp] gi|145574407|gb|ABP83939.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 224 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 83/165 (50%), Gaps = 19/165 (11%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118 IR +S+ P++ ++ L L FDSG DD + KP E+LARV ++ RR Sbjct: 66 IRRNSRTPVMMLTARGRLADKLKGFDSGADDYLVKPFEFPELLARVRSLLRRGEQVSAPD 125 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 LKV + + R + +G+ ++ + F L L LM G+ +++TQI S + Sbjct: 126 VLKVDDLELDPARHRAYRNGQRIDLTTKEFAL-------LHLLMRRSGEVLSRTQIISLV 178 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + FD + NVVE I +LR K+ + + + R +GY ++ Sbjct: 179 WDMNFD--CDTNVVEVSIRRLRAKIDDPFENKLIHTLRGVGYVLE 221 >gi|104783276|ref|YP_609774.1| DNA-binding response regulator TctD [Pseudomonas entomophila L48] gi|95112263|emb|CAK16990.1| putative DNA-binding response regulator TctD [Pseudomonas entomophila L48] Length = 223 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPI 131 +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + R + GP+ Sbjct: 73 LPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLGGERQQRCGPL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 D R + E L +RE+ +LE L+A G+ ++K Q+ + ++GL DE + +E Sbjct: 133 VYDLDTRRFTLGDEPLTLTQREQSVLEALIARPGRVMSKEQLAAQVFGL-DEEASPDAIE 191 Query: 192 SHISKLRKKL 201 +I +LRKKL Sbjct: 192 IYIHRLRKKL 201 >gi|150390957|ref|YP_001321006.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950819|gb|ABR49347.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 225 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 82/157 (52%), Gaps = 11/157 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP++ ++ L FD GVDD + KP +E++ARV A+ +R SN + Sbjct: 69 IREKSNVPILILTARSEEHDKLFGFDLGVDDYMTKPFSVKELVARVKALLKR---SNRQL 125 Query: 127 ETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 T ++V G +QGE L +E +L + N+ + +++ I ++G + Sbjct: 126 STETLIVQGLKVDKKGHQVFLQGERLMLTPKEYDLLLIFLHNQNQALSREVILDGVWG-Y 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D + V++H+ +LR KL+ ++G + + + R LGY Sbjct: 185 DYYGDLRTVDTHVKRLRHKLK-EMG-EQIKTVRGLGY 219 >gi|332366461|gb|EGJ44209.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] Length = 224 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K + N G + Sbjct: 73 TPVLIMTAKESLDDKGHGFERGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLSYGDV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V G+ L +E +L Y + N+ + KTQIF ++G FD +VVE Sbjct: 133 TVNLSTNSTTKAGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTVSVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + R +GY Sbjct: 192 VYVSKIRKKLKGTAFAKNLHTLRSVGY 218 >gi|331091201|ref|ZP_08340042.1| hypothetical protein HMPREF9477_00685 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404648|gb|EGG84187.1| hypothetical protein HMPREF9477_00685 [Lachnospiraceae bacterium 2_1_46FAA] Length = 226 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 6/149 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G L+L IR P+I ++ S Q ++ +G DD + KP E+LAR++A Sbjct: 59 GMNGLDLCASIRDFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHL 118 Query: 117 RRLKVSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR + S+N+ ++ I +SD R ++G L +E I++ L AN G+ + + Sbjct: 119 RREQRSHNKTKSKFLEELIIDYSD-RSLYIKGNKIELSNKEFEIIQLLSANAGQVFDREK 177 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I+ I+G+ D + + V++ HI K+R K Sbjct: 178 IYDCIWGI-DGSGDSVVIKEHIRKIRLKF 205 >gi|325696865|gb|EGD38753.1| DNA-binding response regulator [Streptococcus sanguinis SK160] gi|327459810|gb|EGF06150.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] Length = 224 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K + N G + Sbjct: 73 TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLSYGDV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V G+ L +E +L Y + N+ + KTQIF ++G FD +VVE Sbjct: 133 TVNLSTNSTTKAGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTVSVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + R +GY Sbjct: 192 VYVSKIRKKLKGTTFAKNLHTLRSVGY 218 >gi|270261453|ref|ZP_06189726.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044937|gb|EFA18028.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 223 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 3/167 (1%) Query: 57 GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 GE L L R RAH ++P++ ++ S Q + ++G DD V KP H E++AR+ A+ Sbjct: 56 GEDGLSLIRRWRAHQMKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQAL 115 Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR +++ P ++ R+ V + L E I+E L+ N GK V+K + Sbjct: 116 MRRNSGLASQVIVLPPFQIDLSRRELSVGEQQIKLTAFEYTIIETLIRNAGKVVSKDSLM 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +Y E E + ++ + +LRKKL+ + + + + R GY D Sbjct: 176 LQLYP-DAELRESHTIDVLMGRLRKKLQAEYPQEVITTVRGQGYRFD 221 >gi|228971393|ref|ZP_04132019.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978006|ref|ZP_04138385.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228781667|gb|EEM29866.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228788260|gb|EEM36213.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 209 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 49 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 108 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 109 KQEQQEEIQFGPILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 168 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 169 G-YDYAGSTRTVDTHVKTMRLKL 190 >gi|75908637|ref|YP_322933.1| response regulator receiver modulated diguanylate cyclase [Anabaena variabilis ATCC 29413] gi|75702362|gb|ABA22038.1| response regulator receiver modulated diguanylate cyclase [Anabaena variabilis ATCC 29413] Length = 684 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 100/223 (44%), Gaps = 29/223 (13%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 ++L Y F DG EG+N E + + ++ + R + Sbjct: 18 KSLTSQHYTVDFAKDGE--EGWNFAELYTYDLILLDLILPKLDG---------ISFCRQL 66 Query: 68 RAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118 RA +Q P++ ++ + T + D+G DD V KP +E+LAR+ A+ RR Sbjct: 67 RASGNQTPVLLLTSQDTSITKVAGLDAGADDYVAKPFDFQELLARIRALLRRGGSALPPL 126 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L+ +N R + V DG+ + L +E +LE + N + + + + ++ Sbjct: 127 LEWNNLRLDPSTCEVACDGK-------LLHLTPKEYGLLELFLRNSHRIFSCSALIDQLW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 F+E E+ V SHI LR+KL+ + DP+D+ +GY + Sbjct: 180 S-FEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRL 221 >gi|297572158|ref|YP_003697932.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] gi|296932505|gb|ADH93313.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] Length = 248 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 8/156 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ S +P++ ++ L+ L ++G DD V KP E++ R+ I RR S Sbjct: 73 LRRMREQGSDIPVLFLTAKDDLRDKLQGLNAGADDYVTKPFSLEEVVTRIQVILRRTTPS 132 Query: 123 NNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ IR D + +G + L E ++L YLM N + V+K QI + Sbjct: 133 EE--DSALIRYHDLELNEDTYEVRRRGHMVELSPTEYKLLRYLMVNAERVVSKVQILDHV 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 + +D E ++VES+IS LR+K+ + G D K Sbjct: 191 WD-YDWIGEASIVESYISYLRRKIDSADGLGITDPK 225 >gi|283457122|ref|YP_003361686.1| response regulator [Rothia mucilaginosa DY-18] gi|283133101|dbj|BAI63866.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 247 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 85/160 (53%), Gaps = 7/160 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L RI + + +VP + ++ S+ ++ +G DD V KP E++ R+ + +R V+ Sbjct: 85 LSRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLVQRSGVA 144 Query: 123 N-NRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + AE G + + D R+ GE L + +L YLM N + V+K+QI ++ Sbjct: 145 SIDDAELVVGDLVLNQDTREVTRGGEQINLTATQFDLLRYLMENAKRVVSKSQILDNVWN 204 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +D + N+VE +IS LRKK+ +G +P + + R GY Sbjct: 205 -YDFGGQANIVELYISYLRKKI--DVGREPMIHTVRGAGY 241 >gi|239636903|ref|ZP_04677902.1| response regulator ArlR [Staphylococcus warneri L37603] gi|239597577|gb|EEQ80075.1| response regulator ArlR [Staphylococcus warneri L37603] gi|330685054|gb|EGG96724.1| response regulator ArlR [Staphylococcus epidermidis VCU121] Length = 219 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR P+I I+ + D G DD + KP E+LAR+ AI RR + Sbjct: 61 LEICRQIRQQQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-Q 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + I + + + V G L + E + L N+ + + QI + ++G Sbjct: 120 PKKDTININGIIIDKEAFEVTVDGTQLDLTKTEYDLFYVLAENKNHVLQREQILNHVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220 ++ VE NVV+ +I LR KL+ G D V ++ R +GY I Sbjct: 179 YNTEVETNVVDVYIRYLRNKLK-PFGKDKVIETVRGVGYVI 218 >gi|167761524|ref|ZP_02433651.1| hypothetical protein CLOSCI_03935 [Clostridium scindens ATCC 35704] gi|167661190|gb|EDS05320.1| hypothetical protein CLOSCI_03935 [Clostridium scindens ATCC 35704] Length = 224 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 106/227 (46%), Gaps = 12/227 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D + +++ + G+ GF E +L++ A E + ++ GE Sbjct: 1 MIFCVEDDSNIRELVVYTLESTGLKARGFE--EGSSFLEALALETPDLVLLDIMLPGEDG 58 Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL + ++A + +P+I ++ + + D+G DD V KP E+++R+ A+ R Sbjct: 59 MELLKKLKASPKTRDIPVIMVTAKGAEYDKVMGLDTGADDYVTKPFGMMELVSRIKAVLR 118 Query: 118 RLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R R E G I + + GEV L +E +L+ LM N + + Q+ Sbjct: 119 RSAREGVRKEDSIVIGEIEMNLKKHEVTAAGEVISLTLKEYELLKRLMKNSNIVLTRDQL 178 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D E V+ H+ LR+KL + + +++ R +GY + Sbjct: 179 LEDIWG-YDFDGETRTVDVHVRTLRQKLGS--AGERIETVRGVGYRM 222 >gi|157148587|ref|YP_001455906.1| DNA-binding transcriptional regulator QseB [Citrobacter koseri ATCC BAA-895] gi|157085792|gb|ABV15470.1| hypothetical protein CKO_04414 [Citrobacter koseri ATCC BAA-895] Length = 219 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D AL+ DG A G S++ F + SA D ++ L G G + Sbjct: 3 ILLVEDDALIGDGIKAGLSKMGFSVDWFTEGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R + P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 LREWR--EQGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALLRRAN 120 Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N G + + + G+ PL +E +LE LM N G+ + + I +Y Sbjct: 121 GQVSNELRHGQVTLNPGNLVATLAGDPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N +E H+ LR+ KLG D + + +GY++ Sbjct: 180 TWDEDVSSNTIEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|118444264|ref|YP_877513.1| subtilin biosynthesis regulatory protein spaR [Clostridium novyi NT] gi|118134720|gb|ABK61764.1| subtilin biosynthesis regulatory protein spaR [Clostridium novyi NT] Length = 220 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 3/157 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L + IR P+I ++ Q + G DD ++KP E+ ARVAA RR + Sbjct: 62 LCKEIRNLVDCPIIFLTAKTMEQDIVMGLSLGGDDYISKPFGISELRARVAAHLRREHRE 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N ++ ++ ++ P + E I EYL N G+ +K +I+ ++G++ Sbjct: 122 KQNAFSVSDVKFNITAKEAYYNEKLVPFTKSEYSICEYLAINHGQVFSKERIYEKVFGVY 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +VE HI +R KL++ +G +P+++ +GY Sbjct: 182 GNSDTTAIVE-HIKNIRSKLKS-IGINPIETVWGIGY 216 >gi|94967342|ref|YP_589390.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549392|gb|ABF39316.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 232 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 20/158 (12%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 QVP++ ++ + + D+G DD V KP E+LAR+ A+ RR TGP Sbjct: 72 QVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRR---------TGPH 122 Query: 132 R----VFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R V D EVF L R E +L+ LM N G+ V++ + ++G + Sbjct: 123 RSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNVWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 D A+E N +++ I LR+K+ + + + R GYS Sbjct: 182 DRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGYS 219 >gi|56420692|ref|YP_148010.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380534|dbj|BAD76442.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 224 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 17/162 (10%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IRA P+I I+ S+ + D+G DD + KP E+LAR+ A++RR+ Sbjct: 62 MEVCRRIRAAKSTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVH 121 Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + F D R + E L +RE +L M N + + + Sbjct: 122 PEAN----AQVLTFKDLVVDVQARTVKKGDEFIELTKREYDLLVAFMQNINVVLTRDALL 177 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 ++G FD VE NVV+ ++ LR+KL D D +R++ Sbjct: 178 DKVWG-FDAEVETNVVDVYVRYLRQKL------DEHDKERYI 212 >gi|326386033|ref|ZP_08207657.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326209258|gb|EGD60051.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 258 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 89/183 (48%), Gaps = 4/183 (2%) Query: 40 SSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 ++ R D + ++ L G L + R+ P++ IS + + +G DD + Sbjct: 71 AAERFDAATVDRMLPGLDGLTL-VARMRARQITTPVLVISALGDVDERIAGLRAGGDDYL 129 Query: 100 NKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRIL 157 KP E++ R+ + RR + + GP+ + R V GE L +E R+L Sbjct: 130 AKPFSPAEMVTRIEVLLRRARDYPEDGFLRAGPLELDLVKRKAWVMGEAVELLNKEFRLL 189 Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217 E+L+ + G VA+ IF ++G + EA +N++ HI++LR+KL P+++ + G Sbjct: 190 EFLVRHAGHVVARQVIFEQVWGRYFEA-SDNLINVHIARLRRKLERADWPAPIETIKGEG 248 Query: 218 YSI 220 Y + Sbjct: 249 YRL 251 >gi|148270636|ref|YP_001245096.1| two component transcriptional regulator [Thermotoga petrophila RKU-1] gi|170289342|ref|YP_001739580.1| two component transcriptional regulator [Thermotoga sp. RQ2] gi|147736180|gb|ABQ47520.1| two component transcriptional regulator, winged helix family [Thermotoga petrophila RKU-1] gi|170176845|gb|ACB09897.1| two component transcriptional regulator, winged helix family [Thermotoga sp. RQ2] Length = 226 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 6/157 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+P + +H ++ +I IS + + G DD V KP + RE+LARV A+ RR+ Sbjct: 64 EIPEMKVSHPEMAIIIISARDRDMDRIFGIELGADDYVTKPFNPREVLARVKAVLRRMGK 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + +F + G+ + +E +L+ L K ++ +I + ++G Sbjct: 124 EQKVLRFGRLEIFPEDYIVRYDGKNVEMTAKEFELLKLLATTPNKVFSREEILNRVWG-- 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D+ V + VV+ HIS +R+K+G + + R LGY Sbjct: 182 DDYVSDRVVDVHIS----AIRSKIGKGWIKTVRGLGY 214 >gi|56476059|ref|YP_157648.1| two-component response regulatory protein [Aromatoleum aromaticum EbN1] gi|56312102|emb|CAI06747.1| Two-component response regulatory protein [Aromatoleum aromaticum EbN1] Length = 228 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 3/159 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ S +P++ ++ ++ + D+G DD + KP E+ ARV A+ RR Sbjct: 63 LKRLRARKSALPVLILTAQDGVEERVRGLDAGADDYLTKPFALPELEARVRALTRRGTGQ 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 E G + R ++ G+V L RE +LE G+ V+K QI + G + Sbjct: 123 PRCIEIGSLSYDQADRVAKINGQVVELSAREVGLLEVFALRVGRLVSKDQIVDHLCG-WG 181 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E V N +E ++ +LRKKL + G V + R LGY ++ Sbjct: 182 EEVSSNAIEVYVHRLRKKLEDS-GVRIV-TVRGLGYCLE 218 >gi|295093355|emb|CBK82446.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 228 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 2/161 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L +I VP+I ++ ++ D G DD + KP +E+LAR+ AI RR + Sbjct: 63 LSKIRAEGCDVPVIMLTAKAETDDKINGLDLGADDYLAKPFETKELLARIRAITRRKSEA 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + S + G L +E +I+E LMAN+ ++ + I+G + Sbjct: 123 VSTEMKYGDCTLNSLNYELSSSGGSVKLQNKEYQIMELLMANQNAIISAELMMEKIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D E +VV +IS LRKKL + + R GY +++ Sbjct: 182 DTDTEISVVWVNISYLRKKLSQIGSGVSIKAVRNQGYILEY 222 >gi|254501265|ref|ZP_05113416.1| phosphate regulon transcriptional regulatory protein PhoB [Labrenzia alexandrii DFL-11] gi|222437336|gb|EEE44015.1| phosphate regulon transcriptional regulatory protein PhoB [Labrenzia alexandrii DFL-11] Length = 236 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +RA ++P+I ++ + +G DD V KP E++ARV AI R Sbjct: 66 IELCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAILR 125 Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R +V + +G I + + + L E R+LE+LM G+ ++ Q+ Sbjct: 126 RASPEVVSTMLRSGDIELDRETHRVRRSTKEIHLGPTEFRLLEFLMTAPGRVFSREQLLD 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK L DP+ + R GY+ + Sbjct: 186 GVWG-HDVYVDERTVDVHVGRLRKALNKGKAKDPIRTVRGAGYAFN 230 >gi|209520018|ref|ZP_03268796.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209499557|gb|EDZ99634.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 219 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 82/160 (51%), Gaps = 6/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L R+ A VP++ ++ ++ + ++G DD + KP E++AR A+ RR + Sbjct: 63 LKRVRDAGKDVPVLVLTARGTVVDRVGGLEAGADDYLGKPFDLTELVARCHALLRRAQGR 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + + V + +V PL RE IL L+ N G +++++ ++YG + Sbjct: 123 SIDLIRYQNLTVNPAAQTVQVDEARVPLTSREWAILLQLLTNLGIPQSRSRLEESLYG-W 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E +E N +E H+S LRK KLG + + + R +GY ++ Sbjct: 182 QEEIESNAIEVHVSNLRK----KLGANLIKTVRNIGYVME 217 >gi|303238774|ref|ZP_07325306.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302593653|gb|EFL63369.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 238 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 5/167 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL+ R IR + P+I +S + + DSG DD + KP E+LARV A+ Sbjct: 59 GMTVLQRLRKIRITT--PVILLSARSEISAKVAGLDSGADDYLVKPFSLDELLARVRALG 116 Query: 117 RRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR SNN G I + + + L RE +LE+L+ +G K +I Sbjct: 117 RRKGELFSNNILVYGDIELNTASLKLSTEQSEVALTCRECELLEFLIRRKGIISPKERII 176 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G FD + N VE +IS LRKKL + + R GY I+ Sbjct: 177 EKLWG-FDSSAGANHVEVYISFLRKKLEYIGSNVVITTHRGAGYEIN 222 >gi|291528146|emb|CBK93732.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 223 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 6/130 (4%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPR 151 G +D + KP RE++ARV ++ R K ++ + G I D ++ G+V L Sbjct: 93 GAEDYITKPFSVRELVARVNRVFLRRKSDDSSSVIHAGSISYDLDKKEARRAGQVIALSS 152 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 E RIL+ L N K V++ + I+ EA +V + ++ K++R KLG D + Sbjct: 153 LENRILDLLFTNHDKAVSRNAVLDCIW----EATGNDVYDHTVTVYMKRIRAKLGEDVIK 208 Query: 212 SKRFLGYSID 221 + + +GY +D Sbjct: 209 TVKGIGYRVD 218 >gi|15644015|ref|NP_229064.1| phosphate regulon transcriptional regulatory protein PhoB [Thermotoga maritima MSB8] gi|4981814|gb|AAD36333.1|AE001781_4 phosphate regulon transcriptional regulatory protein PhoB [Thermotoga maritima MSB8] Length = 229 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+P + +H ++ +I IS + + G DD V KP + RE+LARV A+ RR+ Sbjct: 67 EIPEMKVSHPEMAIIIISARDRDMDRIFGIELGADDYVTKPFNPREVLARVKAVLRRMGK 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + +F + G+ + +E +L+ L K ++ +I + ++G Sbjct: 127 EQKVLRFGRLEIFPEDYIVRYDGKNVEMTAKEFELLKLLATTPNKVFSREEILNRVWG-- 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 D+ V + VV+ HIS +R+K+G + + R LGY Sbjct: 185 DDYVSDRVVDVHIS----AIRSKIGKGWIKTVRGLGYK 218 >gi|332994661|gb|AEF04716.1| transcriptional regulatory protein CpxR [Alteromonas sp. SN2] Length = 246 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 71/134 (52%), Gaps = 9/134 (6%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE------TGPIRVFSDGRDPEVQGEV- 146 G DD + KP +HRE++AR+ AI+RRL ++++ + + S + +V GEV Sbjct: 111 GADDYLPKPFNHRELVARIKAIFRRLSLTHSGGTIEQDLIVNELFLSSSSQVAKV-GEVE 169 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L E IL LM N G RV K +I + G +A + + ++ H+S LRKK+ Sbjct: 170 MTLTSTEFSILRLLMLNTGSRVTKEEISLKVLGKSLQAFDRS-IDMHVSNLRKKIAAISN 228 Query: 207 FDPVDSKRFLGYSI 220 + + + R +GY + Sbjct: 229 IEKIKTIRGVGYML 242 >gi|330811233|ref|YP_004355695.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379341|gb|AEA70691.1| Putative response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 240 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 11/163 (6%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE L + R +R H P++ ++ + D G DD V KP+ R +LAR+ Sbjct: 57 LMLPGEDGLSICRKVRGHYDGPILMLTARTDDTDQIQGLDLGADDYVCKPVRPRLLLARI 116 Query: 113 AAIYRR------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 A+ RR + R + GP+ V R+ +QG L E +L L++N G+ Sbjct: 117 QALLRRSEPEPSVAQKQRRLQFGPLVVDDALREAWLQGNGIELTSAEFDLLWLLVSNAGR 176 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +++ +IF+A+ G+ + ++ ++ IS++R K+G DP Sbjct: 177 ILSREEIFTALRGIGYDG-QDRSIDVRISRIRP----KIGDDP 214 >gi|228957669|ref|ZP_04119416.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229108854|ref|ZP_04238459.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229126714|ref|ZP_04255726.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|229149599|ref|ZP_04277831.1| Two-component response regulator [Bacillus cereus m1550] gi|228633945|gb|EEK90542.1| Two-component response regulator [Bacillus cereus m1550] gi|228656654|gb|EEL12480.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228674623|gb|EEL29862.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228802011|gb|EEM48881.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 218 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 58 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199 >gi|126657980|ref|ZP_01729132.1| two-component response regulator [Cyanothece sp. CCY0110] gi|126620618|gb|EAZ91335.1| two-component response regulator [Cyanothece sp. CCY0110] Length = 231 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 105/217 (48%), Gaps = 15/217 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L++ YI + DG E N L ++ I +L+ K + + +I Sbjct: 18 RVLIQHNYIVDWAKDG---EEANDL-----IEMGLNLYTIGIFDWLLPKISGIDLIKKIR 69 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 + +S +P++ ++ + + D+G DD + KP E+LAR+ A+ RR N + Sbjct: 70 QQNSSLPILMLTAKDREEDKVIGLDAGADDYLVKPFGMAELLARLRALQRRFPTINPQKL 129 Query: 128 T-GPIRV-FSD----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 T G I + +S+ RD + + PL +E ++LEY M + + V + Q+ S ++ Sbjct: 130 TVGHITLDYSNYTIFYRDQMGKHQPIPLTNKEFQLLEYFMKHPNQIVTRDQLLSQLWEWG 189 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E + NVV + I LR+KL G + +++ LGY Sbjct: 190 NEPM-SNVVAAQIRLLRRKLEPHCGDNYIETVYGLGY 225 >gi|160898512|ref|YP_001564094.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160364096|gb|ABX35709.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] gi|222834138|gb|EEE72615.1| predicted protein [Populus trichocarpa] Length = 238 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 15/222 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D A + D D+G LE + ++ L+ R A+ ++ G LE Sbjct: 8 LLVEDDAHIADLLTLHLRDEG--LEVMHCARGDDGLRQLERGGWDALVLDIMLPGVDGLE 65 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + R RA ++ P+I IS S + + G DD + KP E++ARV A+ RR++ Sbjct: 66 ICRRARAMARYTPIIIISARSSEVQRILGLEIGADDYLAKPFSVLELVARVKALLRRVEA 125 Query: 121 -VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N R E+G + + DP + G L RE +L + GK ++ + Sbjct: 126 LAQNARLESGSLTIAGLAMDPVARDARLHGARLDLTPREFDLLYFFARQPGKVFSRMDLL 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 +A++G E E+ V +HI++LR K+ DP R L Sbjct: 186 NAVWGYQHEGY-EHTVNTHINRLRAKIEA----DPAQPARIL 222 >gi|15902751|ref|NP_358301.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae R6] gi|116515465|ref|YP_816195.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae D39] gi|182683717|ref|YP_001835464.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae CGSP14] gi|298503196|ref|YP_003725136.1| DNA-binding response regulator [Streptococcus pneumoniae TCH8431/19A] gi|5830517|emb|CAB54564.1| response regulator [Streptococcus pneumoniae] gi|15458297|gb|AAK99511.1| Response regulator, transcriptional regulatory protein [Streptococcus pneumoniae R6] gi|116076041|gb|ABJ53761.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae D39] gi|182629051|gb|ACB89999.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae CGSP14] gi|298238791|gb|ADI69922.1| DNA-binding response regulator [Streptococcus pneumoniae TCH8431/19A] Length = 246 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K + N G I V +V+ L Sbjct: 113 FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGNIVVNLSTNTVKVEDTPVEL 172 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + KTQIF ++G FD +VVE ++SK+RKKL+ + Sbjct: 173 LGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTTFAEN 231 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 232 LQTLRSVGY 240 >gi|281412946|ref|YP_003347025.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] gi|281374049|gb|ADA67611.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] Length = 222 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 6/157 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+P + +H ++ +I IS + + G DD V KP + RE+LARV A+ RR+ Sbjct: 60 EIPEMKVSHPEMAIIIISARDRDMDRIFGIELGADDYVTKPFNPREVLARVKAVLRRMGK 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + +F + G+ + +E +L+ L K ++ +I + ++G Sbjct: 120 EQKVLRFGRLEIFPEDYIVRYDGKNVEMTAKEFELLKLLATTPNKVFSREEILNRVWG-- 177 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D+ V + VV+ HIS +R+K+G + + R LGY Sbjct: 178 DDYVSDRVVDVHIS----AIRSKIGKGWIKTVRGLGY 210 >gi|257067981|ref|YP_003154236.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558799|gb|ACU84646.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 239 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 13/155 (8%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG-- 129 + P++ ++ Q + G DD V KP E++AR+ A+ RR ++ AET Sbjct: 82 KYPILFLTAKDETQDKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRR---THGGAETTVD 138 Query: 130 PIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 V +D R E EV L E ++L YLM N G+ V+KTQI ++ +D Sbjct: 139 SALVVADLRLDEDSHEVHRGDVNIELSPTEFKLLRYLMLNAGRVVSKTQILDHVWD-YDW 197 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + E +VES+IS LR+K+ + +G + +KR +GY Sbjct: 198 SGEVGIVESYISYLRRKI-DVIGEPMIHTKRGIGY 231 >gi|17232666|ref|NP_489214.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134312|dbj|BAB76873.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 601 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 18/166 (10%) Query: 65 RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----- 118 R +RA +Q P++ ++ + T + D+G DD V KP +E+LAR+ A+ RR Sbjct: 64 RQLRASGNQTPILLLTSQDTSITKVTGLDAGADDYVAKPFDFQELLARIRALLRRGGSAL 123 Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 L+ +N R + V DG+ + L +E +LE + N + + + + Sbjct: 124 PPLLEWNNLRLDPSTCEVACDGK-------LLHLTPKEYGLLELFLRNSHRIFSCSALID 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++ F+E E+ V SHI LR+KL+ + DP+D+ +GY + Sbjct: 177 QLWS-FEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRL 221 >gi|103486311|ref|YP_615872.1| two component transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976388|gb|ABF52539.1| two component transcriptional regulator, winged helix family [Sphingopyxis alaskensis RB2256] Length = 232 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 3/153 (1%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAET 128 + VP+I ++ + + ++G DD V KP RE++ARV+A+ RRL+ ++ Sbjct: 76 ANVPIIMLTARGEEEDRIRGLETGADDYVTKPFSPRELVARVSAVLRRLRPALAGEMLSY 135 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 I + S G+V + E R+L + M + G+ ++ Q+ +++G D +E Sbjct: 136 ADIELDSVAHKVVRGGQVVTMGPTEFRLLRHFMEHPGRVFSRGQLLDSVWGQ-DSDIELR 194 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V+ HI +LRK + D + + R GY++D Sbjct: 195 TVDVHIRRLRKAINLPGTSDIIRTVRSAGYALD 227 >gi|313835331|gb|EFS73045.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL037PA2] gi|314928282|gb|EFS92113.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL044PA1] gi|314969982|gb|EFT14080.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL037PA3] gi|328905911|gb|EGG25687.1| two-component response regulator, KdpE [Propionibacterium sp. P08] Length = 227 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 8/149 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +V+E +R SQ P++ IS ++ D+G DD V KP E+LAR+ + Sbjct: 59 GVQVIE---AVRGWSQAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLT 115 Query: 117 RRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR+ + AE G +RV G L E R+LE L+ N G+ V + Sbjct: 116 RRISHDRSGAEPVIAFGTVRVDLTSHTVTRDGANVRLTPTEWRVLELLIHNEGRLVTRQT 175 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + + ++G + + + +IS+LRKKL Sbjct: 176 LLNQVWG-SEHVTDTGYLRLYISQLRKKL 203 >gi|319764865|ref|YP_004128802.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330827070|ref|YP_004390373.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|317119426|gb|ADV01915.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329312442|gb|AEB86857.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 224 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ S +P++ ++ ++ + D G DD + KP E+ ARV A+ RR + Sbjct: 64 LKRLRGRGSALPVLILTAADGIEERVKGLDLGADDYMAKPFALSELEARVRALTRRGMGG 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ + GP+ GR + G++ L RE +LE L+ G+ V+K Q+ + + Sbjct: 124 TSATIKHGPLVYDQAGRVATIDGKMVELSARELGLLEVLLQRAGRLVSKEQLVERLCE-W 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E V N +E +I +LRKK+ G + + R LGY ++ Sbjct: 183 GEEVSNNAIEVYIHRLRKKIER--GPIRIATVRGLGYCLE 220 >gi|229092565|ref|ZP_04223721.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228690852|gb|EEL44627.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 225 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 71/149 (47%), Gaps = 10/149 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G +D ++ V++HI KKLRNKLG Sbjct: 184 WG-YDYYGDDRTVDTHI----KKLRNKLG 207 >gi|182420098|ref|ZP_02951332.1| DNA-binding response regulator [Clostridium butyricum 5521] gi|237669479|ref|ZP_04529459.1| two component transcriptional regulator, winged helix family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376135|gb|EDT73722.1| DNA-binding response regulator [Clostridium butyricum 5521] gi|237654923|gb|EEP52483.1| two component transcriptional regulator, winged helix family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 227 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 13/141 (9%) Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF 147 L F+ G +D + KP E+ AR+ AI + S + +T I F D + ++F Sbjct: 88 LKAFNLGANDYLTKPFFMEELKARINAILK----SMGKVKTANILEFKDLKIDMKTKKIF 143 Query: 148 ------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L + ++LEYL+ N+G + K QIF I G +A E ++E +IS+LRK+L Sbjct: 144 IEDNEIELNEKLYKLLEYLVLNKGVLLFKEQIFDNICGYNSDAATE-IIEVYISRLRKQL 202 Query: 202 RNKLGFDP-VDSKRFLGYSID 221 N G+ + +KR +GY +D Sbjct: 203 -NSFGYGKYLVTKRGMGYILD 222 >gi|163744528|ref|ZP_02151888.1| putative two-component response regulator transcriptional regulatory protein [Oceanibulbus indolifex HEL-45] gi|161381346|gb|EDQ05755.1| putative two-component response regulator transcriptional regulatory protein [Oceanibulbus indolifex HEL-45] Length = 223 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 6/164 (3%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L L + +R A+ P++ +S L ++ ++G DD + KP E+ AR+ A+ RR Sbjct: 60 LTLVKSVRGANVDTPILFLSALGGLNDRVNGLEAGADDYLVKPFAFSELSARLTALARRP 119 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ R + + + G+ + RE R+L YLM N + V +T + A+ Sbjct: 120 PMQAEETRLQVADLEIDLIRHTVCRSGQEIAVQPREFRLLSYLMKNAERVVTRTMLLEAV 179 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + FD NVVE+HIS+LR K+ + + R GYS+ Sbjct: 180 WDFHFDP--NTNVVETHISRLRNKIDKPFDQPLIHTVRGAGYSL 221 >gi|163746354|ref|ZP_02153712.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanibulbus indolifex HEL-45] gi|161380239|gb|EDQ04650.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanibulbus indolifex HEL-45] Length = 229 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 11/155 (7%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 +P+I +S T+ ++G DD V KP + RE++ARV RR + A G + Sbjct: 79 HIPVIMLSARSEEVDTVRGLETGADDYVIKPYNLRELMARVRTQLRRTRP----AAAGAL 134 Query: 132 RVFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 F D + DPE G L E R+L L+ G+ ++ Q+ ++G D V Sbjct: 135 LSFDDIQLDPERHRVSRAGSELKLGPTEYRLLTTLLEKPGRVFSRDQLLDHVWG-RDIYV 193 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + V+ HI++LRK L + G DP+ + R GY++ Sbjct: 194 DTRTVDVHIARLRKALTREGGGDPIRTVRGAGYAL 228 >gi|30019451|ref|NP_831082.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|218236073|ref|YP_002366082.1| DNA-binding response regulator [Bacillus cereus B4264] gi|29894995|gb|AAP08283.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|218164030|gb|ACK64022.1| DNA-binding response regulator [Bacillus cereus B4264] gi|326939022|gb|AEA14918.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 223 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 63 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 122 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 123 KQEQQEEIQFGPILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204 >gi|49475266|ref|YP_033307.1| two-component system regulatory protein [Bartonella henselae str. Houston-1] gi|49238072|emb|CAF27279.1| Two-component system regulatory protein [Bartonella henselae str. Houston-1] Length = 222 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 22/139 (15%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEV 142 D+G DD V KP H E++AR+ A+ RR L +T RVF D Sbjct: 91 IDAGADDYVVKPFHLEELMARLRALIRRSTGHATSTLCCGKVLLDTKTSRVFFD------ 144 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201 G++ L E R+L YLM + + V++T++ +Y FD+ + N VE + +LRK Sbjct: 145 -GQLIKLTSYEFRLLSYLMHHGDRIVSRTELTEHLYDQDFDK--DSNTVEVFVGRLRK-- 199 Query: 202 RNKLGFDPVDSKRFLGYSI 220 KLG D +++ R +GY + Sbjct: 200 --KLGMDLIETIRGMGYRV 216 >gi|332669109|ref|YP_004452117.1| winged helix family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338147|gb|AEE44730.1| two component transcriptional regulator, winged helix family [Cellulomonas fimi ATCC 484] Length = 238 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 36/222 (16%) Query: 31 SLEFEEWLQSSAREDVSAIEAF-----------LIGKGEKVLELPRIIRAHSQVPLIGIS 79 LE E + +A + + AIE F L+ G E+ R +R S VP+I ++ Sbjct: 20 QLEREGYEVVAAADGLQAIELFEEHGADLVLLDLMLPGLPGTEVCRRLRLTSDVPVIMLT 79 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------------LKVSNN 124 + + G DD V KP RE+LAR+ A+ RR L + Sbjct: 80 AKDDEIDKVVGLELGADDYVTKPYSSRELLARMRAVLRRREAAVVAGAGAPAPVLDEEDG 139 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 +GP+ + D +V+GE+ P +E +LE L+ N G+ + + Q+ I+G D Sbjct: 140 LLVSGPVEMDVDRHTVKVRGELVAFPLKEFDLLEMLLRNAGRVLTRGQLIDRIWG-SDYV 198 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSID 221 + ++ H+ K++R K+ DP + + R LGY ++ Sbjct: 199 GDTKTLDVHV----KRVRAKIEADPANPTLLLTVRGLGYKLE 236 >gi|260429018|ref|ZP_05782995.1| transcriptional regulatory protein TctD [Citreicella sp. SE45] gi|260419641|gb|EEX12894.1| transcriptional regulatory protein TctD [Citreicella sp. SE45] Length = 223 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 24/229 (10%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED--VSAIEAFLI------ 54 ++I+D A + G IA F G++ + SL ++AR+ V +A ++ Sbjct: 4 LMIEDAADLAAGVIAQFSKSGIACDLAGSL-------AAARDHLAVQGYDALVLDINLPD 56 Query: 55 GKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G G +L R IRA + P++ ++ ++ + D G DD + KP RE+ AR+ Sbjct: 57 GSGRDLL---REIRARGDRTPVLMLTALFTIDDRVAALDLGADDYLVKPFDQRELEARLR 113 Query: 114 AIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ RR + + G +R + G L RRE +L L+ + + ++K + Sbjct: 114 ALVRRDAEQKGDELALGQLRYSPAQMQATLDGNRLDLTRREAALLGLLLRHADQPLSKER 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYSI 220 ++ ++ D V N +E +I++LRKKL G D V ++R +GY I Sbjct: 174 LYDGLFAFNDADVGLNAIELYIARLRKKL---AGSDVVILTQRGVGYRI 219 >gi|281411631|ref|YP_003345710.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] gi|281372734|gb|ADA66296.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] Length = 225 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 2/148 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130 P++ ++ ++ + + G DD + KP RE++ARV A+ RR S + + G Sbjct: 74 NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGD 133 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + G+ L ++E +ILEYL+ N+ + V K ++ ++ FD+ V +V+ Sbjct: 134 LILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS-FDDEVFSDVL 192 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 SHI LRKK+ + + R +GY Sbjct: 193 RSHIKNLRKKVDKGFKRKIIHTVRGIGY 220 >gi|126651382|ref|ZP_01723589.1| PhoP [Bacillus sp. B14905] gi|126591911|gb|EAZ85994.1| PhoP [Bacillus sp. B14905] Length = 238 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 11/118 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAET-------GPIRVFSDGRDPEVQ 143 G DD + KP RE+LARV A+ RR VS+ + E G +RVF + + +Q Sbjct: 96 GADDYMTKPFSPREVLARVKAVLRRFTQNVVSDEKDEPQEKMFEFGQLRVFPERFEVFLQ 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E +E +L YL+ N+ + + + Q+ SA++ +D A + +V+ HIS LR K+ Sbjct: 156 DEALEFTPKEFELLIYLLENKNRVLTRDQLLSAVWK-YDFAGDTRIVDVHISHLRDKI 212 >gi|90426377|ref|YP_534747.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90108391|gb|ABD90428.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB18] Length = 219 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 108/224 (48%), Gaps = 15/224 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A++ DG A G S++ + E + + A + SAI ++ + Sbjct: 3 ILVVEDDAMIADGIRAGLTLAGASIDCVATCE--DAAAALAANNFSAIVLDIMLPDGSGI 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +RA P++ ++ + + DSG DD + KP E+ AR+ AI + Sbjct: 61 DLLRKLRAGGDTTPVLLLTALDEVGDRISGLDSGADDYLGKPFDLDELGARLRAII---R 117 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + RA T G IR+F + + G PL RRE +L LM G +++++ Sbjct: 118 RRDGRAATCLEHGAIRLFPADNNATLDGAPVPLSRREFAVLHALMERPGVLRSRSELEER 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG DE VE N VE H+ LR KLG +++ R +GY + Sbjct: 178 LYGWGDE-VESNAVEVHVHNLRA----KLGRAAIETVRGIGYRM 216 >gi|330810541|ref|YP_004355003.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378649|gb|AEA69999.1| putative Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 227 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 7/169 (4%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L++ + +R+ S VP+I I+ L D G DD + KP RE++ARV Sbjct: 56 LMLPGRDGLQVCQELRSFSAVPIIMITARVEEVDRLLGLDLGADDYICKPFSPREVVARV 115 Query: 113 AAIYRRLKVSNNRAETGPIRVF--SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 AI RR S T P R+ D + G L E R+L L + G+ ++ Sbjct: 116 KAILRR---SPQLLVTAPARLLIDEDRYQASLDGVALDLTPLELRLLRTLAQSPGRVFSR 172 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 Q+ IY V + V+SHI LR+KL +P++S +GY Sbjct: 173 DQLLDRIYS-DHRVVTDRTVDSHIRNLRRKLEQACPAENPIESLYGVGY 220 >gi|325660888|ref|ZP_08149516.1| hypothetical protein HMPREF0490_00248 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472962|gb|EGC76172.1| hypothetical protein HMPREF0490_00248 [Lachnospiraceae bacterium 4_1_37FAA] Length = 228 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 11/146 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L I R + P+I + SLQ + D G DD + KP E+LAR+ A+ RR + Sbjct: 63 LSAIRRKNIFTPVILATAMDSLQDKISGLDCGADDYLTKPFDAEELLARIRALARRPAL- 121 Query: 123 NNRAETGPIRVFSD-GRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + PI + D DPE + L ++E ++EYL+ N+ + + ++ I S Sbjct: 122 ---FKESPILSYGDLCFDPEKLELSTNEKTLSLSKKEGSLIEYLIKNKEQNLRRSLILSY 178 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR 202 ++G D VEE ++++I LR++LR Sbjct: 179 VWG-ADAEVEEGNLDNYIYFLRRRLR 203 >gi|241206417|ref|YP_002977513.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860307|gb|ACS57974.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 246 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 21/230 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D + L G S + + + D+ ++A L GE Sbjct: 15 ILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAML--PGEDGF 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLD---FFDSGVDDVVNKPIHHREILARVAAIYRR 118 + R +RA VP++ ++ +LQ +D + G DD V KP + RE+LAR+ +I RR Sbjct: 73 SICRRLRAACSVPILMLT---ALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRR 129 Query: 119 LKVSNNRAET-GPIRVFSDGR-DP------EVQGEVFPLPRRERRILEYLMANRGKRVAK 170 ++++ E GP+ +FS R DP + G + E IL N K + + Sbjct: 130 ASYAHHQEEALGPM-MFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLTR 188 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218 Q+ S + VE + +++HIS++R+K+ L DP + + R GY Sbjct: 189 EQLLSMTHAGSAGPVERS-IDAHISRVRQKIEPNLK-DPTFIKTVRLGGY 236 >gi|153940477|ref|YP_001389642.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|170757816|ref|YP_001779924.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|152936373|gb|ABS41871.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|169123028|gb|ACA46864.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 288 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR HS+VP+I IS S + ++G DD + KP + +LA++ + RR+ S + Sbjct: 123 IRNHSKVPIIFISARDSDMDQVMAIENGGDDFITKPFSYYVLLAKIKGVLRRVYGSYAKN 182 Query: 127 ET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +T G + ++++ E +G L + E +L YL N K V++ + ++ Sbjct: 183 DTDFFKIGDLILYTNKSILEFKGRKTELSKNEFSLLLYLFKNINKIVSRDTLLEILWSDT 242 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +++N + ++++LRK+L + +++KR GY + Sbjct: 243 D-FIDDNTLSVNVTRLRKRLEEVGITNAIETKRGQGYML 280 >gi|53804012|ref|YP_114372.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath] gi|53757773|gb|AAU92064.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath] Length = 221 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 8/138 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R + +P++ ++ SL + +SG DD + KP E++AR+ A+ RR + RAE Sbjct: 70 RRGAGIPVLILTARDSLSDRVLGLNSGADDYLVKPFELDELVARIHALVRR---AAGRAE 126 Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 GP+R+ R+ ++GE L RE +L L+ G +++T++ +YG E Sbjct: 127 PVVEHGPLRLLPVKRECWLRGEPVELSAREFDLLYALLEKPGAVLSRTRLEERVYGWGQE 186 Query: 184 AVEENVVESHISKLRKKL 201 V N ++ HI LRKKL Sbjct: 187 VV-SNAIDVHIHHLRKKL 203 >gi|16130921|ref|NP_417497.1| quorum sensing DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli str. K-12 substr. MG1655] gi|89109795|ref|AP_003575.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli str. K-12 substr. W3110] gi|170082568|ref|YP_001731888.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli str. K-12 substr. DH10B] gi|238902138|ref|YP_002927934.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli BW2952] gi|1723888|sp|P52076|QSEB_ECOLI RecName: Full=Transcriptional regulatory protein qseB gi|882555|gb|AAA69193.1| ORF_o219 [Escherichia coli str. K-12 substr. MG1655] gi|1789402|gb|AAC76061.1| quorum sensing DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli str. K-12 substr. MG1655] gi|85675828|dbj|BAE77081.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli str. K12 substr. W3110] gi|169890403|gb|ACB04110.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli str. K-12 substr. DH10B] gi|238860870|gb|ACR62868.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli BW2952] gi|260447939|gb|ACX38361.1| two component transcriptional regulator, winged helix family [Escherichia coli DH1] gi|315137618|dbj|BAJ44777.1| DNA-binding transcriptional regulator QseB [Escherichia coli DH1] Length = 219 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 L---REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + R + GE L +E +LE LM N G+ +++ I +Y Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|134287719|ref|YP_001109885.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134132369|gb|ABO60104.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 221 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 18/172 (10%) Query: 57 GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ LE+ IRA +PL+ I+ L L D G DD V+KP E+LAR+ A+ Sbjct: 56 GKDGLEVLASIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELLARMRAV 115 Query: 116 YRRLK------VSNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRV 168 RR +SN P + D P+VQ L RE +L+ L+ G + Sbjct: 116 LRRKGGTAAPVLSNGVVTLDPATKEACANDGPQVQ-----LSNREFSLLQALLVRPGAIL 170 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++++ IYG + E VE N VE I LR+ KLG + + + R +G+ + Sbjct: 171 SRSELEDRIYG-WGEEVESNAVEYLIHALRR----KLGGEVIKNVRGVGWMV 217 >gi|224282738|ref|ZP_03646060.1| response regulator of two-component system [Bifidobacterium bifidum NCIMB 41171] gi|310287197|ref|YP_003938455.1| Two-component response regulator [Bifidobacterium bifidum S17] gi|313139897|ref|ZP_07802090.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|309251133|gb|ADO52881.1| Two-component response regulator [Bifidobacterium bifidum S17] gi|313132407|gb|EFR50024.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 245 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 20/143 (13%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI------RVFSDGRDPEVQGEVF 147 G DD V KP E++AR+ AI RR + + E PI + D D G Sbjct: 100 GGDDYVTKPFSLEEVVARIRAILRR---TREQVEDDPIIRVGDLEINEDSHDVSRAGHAI 156 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E ++L YLM N G+ ++K QI ++ +D + +VES+IS LRKK+ + Sbjct: 157 DLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ-YDWGGDAAIVESYISYLRKKVDGIMVT 215 Query: 208 DP----------VDSKRFLGYSI 220 D +++KR +GY I Sbjct: 216 DDNGEQHKVTPLIETKRGIGYMI 238 >gi|108763038|ref|YP_633464.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108466918|gb|ABF92103.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 226 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 7/179 (3%) Query: 45 DVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101 + SA +A L+ G LE+ + IRA S++P+I ++ + + G DD + K Sbjct: 43 EASAFDAVLLDVMMPGMDGLEVCKRIRAKSRIPVIMLTAKGDETDRVVGLELGADDYLPK 102 Query: 102 PIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159 P RE+LAR+ A+ RR + S +R E+G + + GR+ V+ L E +L Sbjct: 103 PFSPRELLARLRAVLRRSQPSAVADRLESGGVSIDVAGREVRVEERAVELTGLEFDLLVA 162 Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L+ G+ V + + G D V E V+ HIS LR+KL +G + + R +GY Sbjct: 163 LVRRAGRVVPRDALLGE-AGRSDTVVGERTVDVHISHLRQKL-GDVGTRLIKTVRGVGY 219 >gi|284993022|ref|YP_003411576.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066267|gb|ADB77205.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 240 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 11/171 (6%) Query: 38 LQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 + +S R D+ ++ + G G V+ R+ + P++ ++ + + + G D Sbjct: 50 MAASFRPDLLVLDVMMPGLDGFGVVR--RLRESGRHTPVLFLTARDAAEDKVSGLTLGGD 107 Query: 97 DVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR-DPEVQ-----GEVFPLP 150 D V KP E+LAR+ A+ RR AE+ P F+D D E GEV L Sbjct: 108 DYVTKPFSLDEVLARIRAVLRRSTGPQRPAES-PRLSFADIELDEESHEVVKAGEVVSLS 166 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E ++L YLMAN G+ ++K QI ++ +D + NVVES+IS LR+K+ Sbjct: 167 PTEFKLLRYLMANAGRVLSKAQILDHVWN-YDFNGDANVVESYISYLRRKV 216 >gi|197301304|ref|ZP_03166389.1| hypothetical protein RUMLAC_00035 [Ruminococcus lactaris ATCC 29176] gi|197299622|gb|EDY34137.1| hypothetical protein RUMLAC_00035 [Ruminococcus lactaris ATCC 29176] Length = 220 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 3/158 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IRA P++ ++ + ++ G DD ++KP E+ AR+ A RR Sbjct: 61 ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120 Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ R G + + + V + PL + E I E+L NRG+ +K QI A++G Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD ++ + +HI +R K + + P+ + +GY Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGY 216 >gi|119944977|ref|YP_942657.1| two component transcriptional regulator, winged helix family protein [Psychromonas ingrahamii 37] gi|119863581|gb|ABM03058.1| two component transcriptional regulator, winged helix family protein [Psychromonas ingrahamii 37] Length = 218 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 6/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L ++ +A ++P++ ++ + + D G DD + KP +E+LAR+ I RR+ Sbjct: 63 LSQVRKAGHKLPILILTARDDIDDRVKGLDGGADDYLLKPFALQELLARLRVIVRRVSGY 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + ++ E + + E G L E ++L L+ G+ ++K + +YG + Sbjct: 123 AESKIELHGLVISLAKNTVEYHGAAIKLTNTEFKLLTTLVTKAGRVLSKEYLQQTLYG-W 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE +N +E +I LRKK+ N+L + + R +GY I+ Sbjct: 182 DEMASDNAIEVYIHNLRKKINNQL----IKNIRGVGYIIE 217 >gi|15614507|ref|NP_242810.1| two-component response regulator [Bacillus halodurans C-125] gi|10174562|dbj|BAB05663.1| two-component response regulator [Bacillus halodurans C-125] Length = 229 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 4/140 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA SQ+P+I ++ + G DD + KP RE++AR+ RR + Sbjct: 70 IRAFSQIPIIMLTARGGEDDKVMGLQIGADDYIVKPFSPRELVARIEVALRRTQGIQQVD 129 Query: 127 ETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +TG +R+ GR V G+ L ++E +L +L+ +RG+ + + ++G+ Sbjct: 130 DTGYRFNELRIQPSGRKVFVNGQEISLTKKEYDLLVFLLEHRGRVFTREHLHDRLWGMDT 189 Query: 183 EAVEENVVESHISKLRKKLR 202 + V++HI LR KL+ Sbjct: 190 QQGTLRTVDTHIKTLRLKLK 209 >gi|311032627|ref|ZP_07710717.1| two-component response regulator [Bacillus sp. m3-13] Length = 227 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 9/142 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +P++ ++ + G DD V KP +E+LARV A+ RR +N+A Sbjct: 70 IREKYMMPILMLTAKSDELDKVRGLKLGADDYVMKPFSPKELLARVEALLRR----SNQA 125 Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 I V R V GE L RRE +L +LM + GK ++ Q+ I+GL Sbjct: 126 FFDVVSHSEITVQKSARQVLVGGERINLARREYDLLLFLMEHEGKVFSREQLHDVIWGLD 185 Query: 182 DEAVEENVVESHISKLRKKLRN 203 E V++H+ LR KL++ Sbjct: 186 TEKGSYRTVDTHVKTLRFKLKD 207 >gi|256850843|ref|ZP_05556232.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260661054|ref|ZP_05861968.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|282934486|ref|ZP_06339741.1| response regulator ArlR [Lactobacillus jensenii 208-1] gi|297205717|ref|ZP_06923112.1| response regulator [Lactobacillus jensenii JV-V16] gi|256615905|gb|EEU21093.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260547991|gb|EEX23967.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|281301433|gb|EFA93722.1| response regulator ArlR [Lactobacillus jensenii 208-1] gi|297148843|gb|EFH29141.1| response regulator [Lactobacillus jensenii JV-V16] Length = 240 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 11/151 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LE+ R +R P+I ++ S+ + D G DD + KP E+LAR+ A+ RR+ Sbjct: 61 LEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVN 120 Query: 120 ---KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 KVS+N A + F+D R + L +RE +L L+ N+ V++ Sbjct: 121 IEKKVSSNAAIKQKVVKFNDLTIETANRIVHRGDKTIDLTKREYNLLMTLIDNKNNVVSR 180 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q+ + I+G D +E NVVE ++ LR K+ Sbjct: 181 EQLLNKIWG-PDSNIETNVVEVYVRYLRNKI 210 >gi|219523854|gb|ACL14890.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica] Length = 224 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P++ ++ Q ++ SG DD V KP H E++AR+ A+ RR +++ P Sbjct: 74 LPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSGLASQVINIPPF 133 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 +V R+ V EV L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 134 QVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 192 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +LRKK++ + D + + R GY Sbjct: 193 VLMGRLRKKIQAQYPHDVITTVRGQGY 219 >gi|163734401|ref|ZP_02141841.1| probable two-component response regulator transcription regulator protein [Roseobacter litoralis Och 149] gi|161392409|gb|EDQ16738.1| probable two-component response regulator transcription regulator protein [Roseobacter litoralis Och 149] Length = 223 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 108/209 (51%), Gaps = 15/209 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 +LI+D A V D F G++ EG+ ++ E+ L+ +A+ + + L+ G Sbjct: 3 ILLIEDEARVAD-----FVRRGLAAEGWSVDHAANGEDGLELAAQNNYDVVLLDLMLPGI 57 Query: 59 KVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 + + R +RA S+ P++ ++ + ++ G DD + KP E++AR+ A++R Sbjct: 58 QGQGVCRKLRARKSKTPIMMLTALDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHR 117 Query: 118 RLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R VS+ G I + V+ + L ++ER +L+ L+ + G+ +++ + Sbjct: 118 RATGYTADVSDTIITNGAITFDRASLEVNVEKKPIELTKKERDLLQLLLTSNGRVLSRER 177 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I + ++GL + + NVV+ ++ +LR+KL Sbjct: 178 ILNTVWGLNADPL-TNVVDVYVGRLRRKL 205 >gi|329954397|ref|ZP_08295489.1| putative transcriptional regulatory protein ResD [Bacteroides clarus YIT 12056] gi|328527665|gb|EGF54658.1| putative transcriptional regulatory protein ResD [Bacteroides clarus YIT 12056] Length = 229 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 94/195 (48%), Gaps = 24/195 (12%) Query: 21 DDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------KGEKVLELPRIIRAHSQVP 74 ++G ++ NS E + + D+SA L+ G K+ + + + ++VP Sbjct: 25 NEGYEVDTANSAE------EALKMDISAYNLLLLDVMMGEISGFKMASMLKKEKKTAKVP 78 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134 +I I+ + T+ F+ G DD ++KP RE+ ARV A+ RR E P ++ Sbjct: 79 IIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVLRR--TQQAETERAPEQIV 136 Query: 135 SDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VE 186 + + GE PL ++E IL L+ N+G+ ++ I S I+ DE V Sbjct: 137 YKSLVLDIIKKRVSIDGEEAPLTKKEFEILLLLLQNKGRVFSREDILSRIWS--DEVYVL 194 Query: 187 ENVVESHISKLRKKL 201 + ++ +I++LRKK+ Sbjct: 195 DRTIDVNITRLRKKI 209 >gi|283798726|ref|ZP_06347879.1| DNA-binding response regulator DltR [Clostridium sp. M62/1] gi|291073407|gb|EFE10771.1| DNA-binding response regulator DltR [Clostridium sp. M62/1] gi|295090823|emb|CBK76930.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] gi|295116054|emb|CBL36901.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SM4/1] Length = 224 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 53/222 (23%), Positives = 106/222 (47%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60 +L +D A + A+ + S++ + E+L+S + V I ++ K + + Sbjct: 3 LLLAEDEAALSKALTAILERNNYSVDSVCDGQAALEYLESDNYDGV--ILDIMMPKIDGI 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L ++ + S VP++ ++ + + D+G +D + KP H RE+LAR+ A+ R Sbjct: 61 TVLRKLRQKGSLVPVLLLTAKSEVDDKVLGLDAGANDYLTKPFHSRELLARIRAMTRTQT 120 Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ + G + + + + L +E +++E LM+N ++ + I+G Sbjct: 121 AHPDSQLQMGNVVLNRASFELSTPSGSYRLANKEFQMMEMLMSNPKCLISSERFMEKIWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D E NVV +IS LRKKL + + R GYS++ Sbjct: 181 -YDSEAEINVVWVYISYLRKKLAALHATIHIKASRNAGYSLE 221 >gi|228938514|ref|ZP_04101122.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228821112|gb|EEM67129.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 203 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 43 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 102 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 103 KQEQQEEIQFGPILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 162 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 163 G-YDYAGSTRTVDTHVKTMRLKL 184 >gi|240146411|ref|ZP_04745012.1| subtilin biosynthesis regulatory protein SpaR [Roseburia intestinalis L1-82] gi|257201459|gb|EEU99743.1| subtilin biosynthesis regulatory protein SpaR [Roseburia intestinalis L1-82] gi|291526354|emb|CBK91941.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291526803|emb|CBK92389.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 220 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 3/158 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IRA P++ ++ + ++ G DD ++KP E+ AR+ A RR Sbjct: 61 ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120 Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ R G + + + V + PL + E I E+L NRG+ +K QI A++G Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD ++ + +HI +R K + + P+ + +GY Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGY 216 >gi|217979526|ref|YP_002363673.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] gi|217504902|gb|ACK52311.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] Length = 236 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 82/160 (51%), Gaps = 4/160 (2%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ R + +P++ +S ++ + +G DD + KP E+ ARV A+ RR + + + Sbjct: 77 RLRRDDAHLPVLFVSGLTAVDERIRALKAGGDDYLTKPFALGELAARVDALLRRSQSAQD 136 Query: 125 RA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 A GP+ + R + L E ++LEY+M + G+ +++ + ++G + Sbjct: 137 TALVVGPLMLDRISRMAQRGARAIALLPAEFKLLEYMMRHAGQTLSRAMLLEDVWG-YRS 195 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222 N+++ HI KLR+K+ + G P + S R G+++ W Sbjct: 196 LPNTNLIDVHIGKLRRKI-DAAGETPLIHSVRGAGFTLQW 234 >gi|126700609|ref|YP_001089506.1| two-component system esponse regulator [Clostridium difficile 630] gi|254976534|ref|ZP_05273006.1| two-component system esponse regulator [Clostridium difficile QCD-66c26] gi|255093919|ref|ZP_05323397.1| two-component system esponse regulator [Clostridium difficile CIP 107932] gi|255102100|ref|ZP_05331077.1| two-component system esponse regulator [Clostridium difficile QCD-63q42] gi|255307969|ref|ZP_05352140.1| two-component system esponse regulator [Clostridium difficile ATCC 43255] gi|255315671|ref|ZP_05357254.1| two-component system esponse regulator [Clostridium difficile QCD-76w55] gi|255518332|ref|ZP_05386008.1| two-component system esponse regulator [Clostridium difficile QCD-97b34] gi|255651449|ref|ZP_05398351.1| two-component system esponse regulator [Clostridium difficile QCD-37x79] gi|260684509|ref|YP_003215794.1| two-component system esponse regulator [Clostridium difficile CD196] gi|260688167|ref|YP_003219301.1| two-component system esponse regulator [Clostridium difficile R20291] gi|306521274|ref|ZP_07407621.1| two-component system esponse regulator [Clostridium difficile QCD-32g58] gi|115252046|emb|CAJ69882.1| Two-component response regulator [Clostridium difficile] gi|260210672|emb|CBA65415.1| two-component system esponse regulator [Clostridium difficile CD196] gi|260214184|emb|CBE06427.1| two-component system esponse regulator [Clostridium difficile R20291] Length = 230 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 9/166 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S +P+I IS + +SG DD + KP ++ ++A++ + RR+ Sbjct: 66 RCIRQQSNLPIIFISARDGNVDQIRALESGADDYITKPFYYDVVMAKIKSHIRRVYGEYS 125 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K+ E ++ + + + E+ GE + ++E ++E L+ K V++ + I+ Sbjct: 126 PKIDERIVELDGLKFYPERLELELNGENLIITKKEGILIECLIKRYPKVVSRDYLLEKIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223 E VEEN + ++S++RK+ +LG D V + R LGY ++ N Sbjct: 186 DDI-EFVEENTLNVNVSRIRKRFE-ELGIDNAVQTVRGLGYKLNKN 229 >gi|89093375|ref|ZP_01166324.1| DNA-binding response regulator BaeS [Oceanospirillum sp. MED92] gi|89082354|gb|EAR61577.1| DNA-binding response regulator BaeS [Oceanospirillum sp. MED92] Length = 229 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 6/178 (3%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD 89 N LE W++ + + + I L+ G+ +E+ + IR S P+I + L Sbjct: 36 NGLEVTGWVK---QHNPAVILLDLMLPGKDGMEICKEIRTFSNTPIIMTTARVEEIDRLL 92 Query: 90 FFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETG-PIRVFSDGRDPEVQGEVF 147 + G DD V KP RE++ARV A RR+ S N +T PI + + + GE Sbjct: 93 GLELGADDYVCKPYSPREVVARVKATLRRIAAFSGNTPKTADPISLDEERFLAFIGGEQL 152 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 L E R+++ + N+G+ +++Q+ Y V + V++HI LRKK++ L Sbjct: 153 ELTPVEFRMMQTFLDNQGRVFSRSQLMDKAY-TDQRVVSDRTVDTHIKNLRKKIQPHL 209 >gi|254819560|ref|ZP_05224561.1| two component system response regulator [Mycobacterium intracellulare ATCC 13950] Length = 266 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 15/194 (7%) Query: 39 QSSAREDVSAIEAFLIG------------KGEKVLELPRIIRAHSQVPLIGISDYPSLQT 86 + AR D +EA L G G L +IR + ++ I+ L Sbjct: 71 HTDARCDGGGLEAVLDGMRPDLVVLDVMLPGRDGFALIDVIREWGDIGIVLITARDGLPD 130 Query: 87 TLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV 146 L D G DD V KP E+++RV A+ RR + G + + G Sbjct: 131 RLRGLDGGADDYVIKPFELAELVSRVGAVLRRRGRLPQVVQVGDVALDLGAGVAARDGHR 190 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L E R+L + + RG+ V+ QI + ++G +A + N+V+ H+S LR+KL G Sbjct: 191 LDLTATELRVLTFFVEQRGRIVSAAQILNGVWGY--DAYDPNLVQVHVSGLRRKLEAH-G 247 Query: 207 FDPVDSKRFLGYSI 220 + + R +GY + Sbjct: 248 PRILHTVRGIGYRL 261 >gi|167031315|ref|YP_001666546.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166857803|gb|ABY96210.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 240 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 95/188 (50%), Gaps = 14/188 (7%) Query: 28 GFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84 G+N L + E+ + AR+ V + L+ GE L L R ++A + +I +S S Sbjct: 26 GYNVLAAADGEQMREQLARQKVELVVLDLMLPGEDGLSLCRQLQATPGLAVIMLSAKGST 85 Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI---RVFSDGRDPE 141 + + G DD + KP RE++AR+ A+ RR + + +AE + ++F+ R Sbjct: 86 LDRIIGLEVGADDYLAKPFEPRELIARIKAVLRRPQRLDAQAEEPAVMDAQLFAGFRLEH 145 Query: 142 VQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 V+ GE LPR + R+L L+ + V++ Q+ + +G D ++ V+ + Sbjct: 146 VKRLLTRPDGETLTLPRSDYRVLRELLEANNRVVSRDQLTRSAFG-RDHLPDDRSVDMCV 204 Query: 195 SKLRKKLR 202 S+LR++LR Sbjct: 205 SRLRQQLR 212 >gi|307709217|ref|ZP_07645676.1| response regulator [Streptococcus mitis SK564] gi|307620163|gb|EFN99280.1| response regulator [Streptococcus mitis SK564] Length = 224 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K + N G I + +V+ L Sbjct: 91 FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLSYGDILINLSTNTVKVEDTPVEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + KTQIF ++G FD +VVE ++SK+RKKL+ + Sbjct: 151 LGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTTFAEN 209 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 210 LQTLRSVGY 218 >gi|302036228|ref|YP_003796550.1| putative phosphate regulon transcriptional regulatory protein PhoB [Candidatus Nitrospira defluvii] gi|300604292|emb|CBK40624.1| putative Phosphate regulon transcriptional regulatory protein phoB [Candidatus Nitrospira defluvii] Length = 238 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 88/168 (52%), Gaps = 7/168 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +V + R+ + + +P++ ++ T+ + G DD V KP + ++ARV A+ Sbjct: 67 GLEVCKRIRLNQETALLPILMLTAKAEESDTVIGLELGADDYVTKPFSPKALVARVKALL 126 Query: 117 RRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RRL+ + N +T GP+ V + + G+ L +E +LE+L+ N G+ + + Sbjct: 127 RRLERNANSPQTQYHYGPLTVDLSRHEVRLDGQEVALTAKEFGLLEHLLRNIGRVLTRDV 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + SA++G +D V+ H+ +L++KL L D + S + LGY + Sbjct: 187 LLSAVWG-YDYYGTTRTVDVHVRRLKQKL--PLLDDAIISIKSLGYKL 231 >gi|226315382|ref|YP_002775278.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098332|dbj|BAH46774.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 233 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 73/152 (48%), Gaps = 16/152 (10%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R+IR +P+I +S S + G DD + KP + E++ARV A RR K Sbjct: 64 EVTRLIREQHNMPIIFLSAKTSDLDKISGLVMGADDYMTKPFNPMELVARVNAQLRRFKQ 123 Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKT 171 SN E G + ++ + R + GE L +E IL YL+A K+V + Sbjct: 124 LNQPAVAVASNKVLEAGGLVIYPEERTVSLYGETIELTPKEFDIL-YLLARYPKKVFSAD 182 Query: 172 QIFSAIYGLFDEAVEE--NVVESHISKLRKKL 201 IF ++G EA E N V HI LRKKL Sbjct: 183 NIFEMVWG---EAYYEGSNTVMVHIRTLRKKL 211 >gi|125717796|ref|YP_001034929.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|125497713|gb|ABN44379.1| Two-component response transcriptional regulator (CheY-like receiver domain and a winged-helix DNA-binding domains), putative [Streptococcus sanguinis SK36] gi|324990861|gb|EGC22796.1| DNA-binding response regulator [Streptococcus sanguinis SK353] gi|324993111|gb|EGC25031.1| DNA-binding response regulator [Streptococcus sanguinis SK405] gi|324995585|gb|EGC27497.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|325687908|gb|EGD29928.1| DNA-binding response regulator [Streptococcus sanguinis SK72] gi|327461377|gb|EGF07708.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327469539|gb|EGF15008.1| DNA-binding response regulator [Streptococcus sanguinis SK330] gi|327489235|gb|EGF21028.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] gi|328946064|gb|EGG40210.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] gi|332361465|gb|EGJ39269.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] Length = 224 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K + N G + Sbjct: 73 TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLSYGDV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V G+ L +E +L Y + N+ + KTQIF ++G FD +VVE Sbjct: 133 TVNLSTNSTTKAGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTVSVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + R +GY Sbjct: 192 VYVSKIRKKLKGTAFAKNLHTLRSVGY 218 >gi|15900691|ref|NP_345295.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae TIGR4] gi|111658151|ref|ZP_01408848.1| hypothetical protein SpneT_02000676 [Streptococcus pneumoniae TIGR4] gi|148985849|ref|ZP_01818943.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP3-BS71] gi|148990411|ref|ZP_01821577.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP6-BS73] gi|148992467|ref|ZP_01822162.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP9-BS68] gi|148997122|ref|ZP_01824776.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP11-BS70] gi|149003430|ref|ZP_01828319.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP14-BS69] gi|149007683|ref|ZP_01831300.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP18-BS74] gi|149010570|ref|ZP_01831941.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP19-BS75] gi|149021667|ref|ZP_01835698.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP23-BS72] gi|168484457|ref|ZP_02709409.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae CDC1873-00] gi|168486188|ref|ZP_02710696.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae CDC1087-00] gi|168489819|ref|ZP_02714018.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae SP195] gi|168490895|ref|ZP_02715038.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae CDC0288-04] gi|168492956|ref|ZP_02717099.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae CDC3059-06] gi|168575461|ref|ZP_02721397.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae MLV-016] gi|169833866|ref|YP_001694261.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae Hungary19A-6] gi|194398608|ref|YP_002037443.1| CiaR response regulator TCS05 [Streptococcus pneumoniae G54] gi|225854314|ref|YP_002735826.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae JJA] gi|225856472|ref|YP_002737983.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae P1031] gi|225858608|ref|YP_002740118.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae 70585] gi|225861298|ref|YP_002742807.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae Taiwan19F-14] gi|237649444|ref|ZP_04523696.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae CCRI 1974] gi|237821004|ref|ZP_04596849.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae CCRI 1974M2] gi|298230630|ref|ZP_06964311.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255363|ref|ZP_06978949.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae str. Canada MDR_19A] gi|303255789|ref|ZP_07341830.1| CiaR response regulator TCS05 [Streptococcus pneumoniae BS455] gi|303260265|ref|ZP_07346236.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae SP-BS293] gi|303261471|ref|ZP_07347419.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae SP14-BS292] gi|303264139|ref|ZP_07350060.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae BS397] gi|303266251|ref|ZP_07352142.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae BS457] gi|303268689|ref|ZP_07354479.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae BS458] gi|307067403|ref|YP_003876369.1| CheY-like receiver/winged-helix DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307127650|ref|YP_003879681.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae 670-6B] gi|61220925|sp|P0A4H7|CIAR_STRPN RecName: Full=Transcriptional regulatory protein CiaR gi|61220927|sp|P0A4H8|CIAR_STRR6 RecName: Full=Transcriptional regulatory protein CiaR gi|495276|emb|CAA54465.1| response regulator [Streptococcus pneumoniae] gi|14972274|gb|AAK74935.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae TIGR4] gi|147756822|gb|EDK63862.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP11-BS70] gi|147758613|gb|EDK65611.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP14-BS69] gi|147760838|gb|EDK67809.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP18-BS74] gi|147765051|gb|EDK71980.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP19-BS75] gi|147921995|gb|EDK73119.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP3-BS71] gi|147924316|gb|EDK75409.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP6-BS73] gi|147928784|gb|EDK79797.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP9-BS68] gi|147930128|gb|EDK81114.1| DNA-binding response regulator CiaR [Streptococcus pneumoniae SP23-BS72] gi|168996368|gb|ACA36980.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae Hungary19A-6] gi|172042318|gb|EDT50364.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae CDC1873-00] gi|183570751|gb|EDT91279.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae CDC1087-00] gi|183571796|gb|EDT92324.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae SP195] gi|183574782|gb|EDT95310.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae CDC0288-04] gi|183577079|gb|EDT97607.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae CDC3059-06] gi|183578577|gb|EDT99105.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae MLV-016] gi|194358275|gb|ACF56723.1| CiaR response regulator TCS05 [Streptococcus pneumoniae G54] gi|225720388|gb|ACO16242.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae 70585] gi|225724185|gb|ACO20038.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae JJA] gi|225725849|gb|ACO21701.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae P1031] gi|225726696|gb|ACO22547.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae Taiwan19F-14] gi|291195955|emb|CBE70267.1| CiaR protein [Streptococcus pneumoniae] gi|291195959|emb|CBE70270.1| CiaR protein [Streptococcus pneumoniae] gi|301793955|emb|CBW36351.1| response regulator protein [Streptococcus pneumoniae INV104] gi|301799813|emb|CBW32382.1| response regulator protein [Streptococcus pneumoniae OXC141] gi|301801642|emb|CBW34340.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302597173|gb|EFL64278.1| CiaR response regulator TCS05 [Streptococcus pneumoniae BS455] gi|302637605|gb|EFL68092.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae SP14-BS292] gi|302638589|gb|EFL69053.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae SP-BS293] gi|302641749|gb|EFL72106.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae BS458] gi|302644181|gb|EFL74437.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae BS457] gi|302646544|gb|EFL76770.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae BS397] gi|306408940|gb|ADM84367.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pneumoniae AP200] gi|306484712|gb|ADM91581.1| transcriptional regulatory protein CiaR [Streptococcus pneumoniae 670-6B] gi|327390155|gb|EGE88498.1| response regulator [Streptococcus pneumoniae GA04375] gi|332073074|gb|EGI83553.1| response regulator [Streptococcus pneumoniae GA17570] gi|332077215|gb|EGI87677.1| response regulator [Streptococcus pneumoniae GA17545] gi|332202662|gb|EGJ16731.1| response regulator [Streptococcus pneumoniae GA41317] gi|332203954|gb|EGJ18021.1| response regulator [Streptococcus pneumoniae GA47368] gi|332204809|gb|EGJ18874.1| response regulator [Streptococcus pneumoniae GA47901] Length = 224 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K + N G I V +V+ L Sbjct: 91 FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGNIVVNLSTNTVKVEDTPVEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + KTQIF ++G FD +VVE ++SK+RKKL+ + Sbjct: 151 LGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTTFAEN 209 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 210 LQTLRSVGY 218 >gi|294651275|ref|ZP_06728601.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC 19194] gi|292822841|gb|EFF81718.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC 19194] Length = 225 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 12/167 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +++ + IR + +P++ IS LQ +D + G DD + KP E+LAR+ A+ RR Sbjct: 61 MQILKQIRQRTAMPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARIHALLRRGN 120 Query: 119 LKVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ N+ T G + + + +GE L RE IL ++ + K +K + Sbjct: 121 TVMNQNKGNTQLLKSGDLILDVEQHSATFKGEQIELSNREWAILIPMVTHPNKIFSKANL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y FD V N +E ++ LR KLG D + + R LGY + Sbjct: 181 EDKLYD-FDSEVTSNTIEVYVHHLRA----KLGKDFIRTIRGLGYRL 222 >gi|254555419|ref|YP_003061836.1| response regulator [Lactobacillus plantarum JDM1] gi|308179421|ref|YP_003923549.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044346|gb|ACT61139.1| response regulator [Lactobacillus plantarum JDM1] gi|308044912|gb|ADN97455.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 234 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 28/227 (12%) Query: 16 IALFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV------------- 60 I + D+G SL G+ L+FE++ A ++A+E + + E + Sbjct: 5 ILIVEDEG-SLSGYLTKELQFEDFNVLVAANGLAAMETYQAHQNELLLILLDWMLPKLDG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR H QVP+I ++ + + D+G DD + KP E+LAR+ I RR++ Sbjct: 64 MEVLRRIRKHDQVPVIIMTARDYVGDKVAGLDNGADDYITKPFEIEELLARIRVIQRRIE 123 Query: 121 VSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N+ E + D R Q EV L RE +L++ +A+ + + + Sbjct: 124 ---NQVEPNQVYQLDDIQLDTKAHRVTNGQEEV-TLTHREYDLLQFFLAHPDEVFTRDDL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D ++NVV+ ++ LR K+ + + R +GY + Sbjct: 180 LDQVWGA-DFLGQQNVVDVYVGYLRNKITTTGASPLIQTVRGVGYKL 225 >gi|225377534|ref|ZP_03754755.1| hypothetical protein ROSEINA2194_03184 [Roseburia inulinivorans DSM 16841] gi|225210611|gb|EEG92965.1| hypothetical protein ROSEINA2194_03184 [Roseburia inulinivorans DSM 16841] Length = 220 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 3/158 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IRA P++ ++ + ++ G DD ++KP E+ AR+ A RR Sbjct: 61 ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120 Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ R G + + + V + PL + E I E+L NRG+ +K QI A++G Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD ++ + +HI +R K + + P+ + +GY Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGY 216 >gi|184155774|ref|YP_001844114.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|227515634|ref|ZP_03945683.1| response regulator [Lactobacillus fermentum ATCC 14931] gi|260663510|ref|ZP_05864400.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] gi|183227118|dbj|BAG27634.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|227086064|gb|EEI21376.1| response regulator [Lactobacillus fermentum ATCC 14931] gi|260552051|gb|EEX25104.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] Length = 228 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R P+I ++ S+ + D G DD + KP E+LARV A+ RR+ Sbjct: 61 LEVARRVREVKDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRIS 120 Query: 121 V---SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + +N+ +T + + + R EV L +RE +L LM N +++ ++ Sbjct: 121 IEGDANSVHQTTVTYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKEL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 S ++G +D VE NVV+ +I LR K+ + + R GY I Sbjct: 181 LSKVWG-YDSKVETNVVDVYIRYLRNKIDRPGEKSYIQTVRGTGYVI 226 >gi|168186215|ref|ZP_02620850.1| DNA-binding response regulator [Clostridium botulinum C str. Eklund] gi|169295668|gb|EDS77801.1| DNA-binding response regulator [Clostridium botulinum C str. Eklund] Length = 223 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 85/164 (51%), Gaps = 10/164 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 + R +R S VP+I ++ S + + G DD V KP + +LAR+A+I RR Sbjct: 63 ICREVRKFSNVPIIVVTSRDSDMDEIMSMNLGADDFVTKPYNTEILLARIASILRRTYGK 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY- 178 V + + + + ++ L + E +IL +LM N+GK V++ + ++ Sbjct: 123 DVPQDVLSYKGLNLNLSSGSISYEDKILELTKNELKILSFLMKNQGKIVSRESLMDYLWS 182 Query: 179 -GLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220 LF +++N + ++++LRKKL + +G V +++R LGY I Sbjct: 183 SNLF---IDDNTLSVNVTRLRKKLED-IGLKSVIETRRGLGYII 222 >gi|186475948|ref|YP_001857418.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184192407|gb|ACC70372.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 228 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 16/157 (10%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETG 129 +++P++ ++ + + D+G DD + KP E+++R A+ RR S R +E Sbjct: 80 NEIPVLVLTAKDTAADKVRGLDAGADDYLGKPFDLAELISRCRALIRR---SQGRGSELI 136 Query: 130 PIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 R S DP Q G PL RE +L +L+ + G + +I ++YG + E Sbjct: 137 EWRGLS--VDPVAQTVSKDGARVPLTAREWAVLIHLLTHAGVPQPRARIEESLYG-WHEE 193 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE N +E H+S LRK KLG D + + R GY +D Sbjct: 194 VESNAIEVHVSNLRK----KLGGDVIRTVRGFGYVVD 226 >gi|86747907|ref|YP_484403.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86570935|gb|ABD05492.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] Length = 233 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 10/168 (5%) Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +RA + Q+P+I ++ + +G DD + KP E+LARV + R Sbjct: 62 IELCRRLRARTDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121 Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + R T G + + D R G L E R+LE+ + + G+ ++ Q+ Sbjct: 122 R--AAPERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 180 LDGVWG-RDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226 >gi|66047192|ref|YP_237033.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|63257899|gb|AAY38995.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|330973017|gb|EGH73083.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 223 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 79/149 (53%), Gaps = 11/149 (7%) Query: 63 LPRI--------IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 LPR+ +RA S+ +P++ ++ ++ + + G DD + KP E+ ARV Sbjct: 54 LPRMDGFEVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVK 113 Query: 114 AIYRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ RR + R + + + D R + E+ L RE+ +LE L+A G+ ++K Q Sbjct: 114 ALLRRSVLGGERQQCCGVLAYDLDTRRFTLGEELLTLTSREQAVLEALIARPGRVMSKEQ 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + + ++GL DE + +E ++ +LRKKL Sbjct: 174 LAAQVFGL-DEEASPDAIEIYVHRLRKKL 201 >gi|89096819|ref|ZP_01169710.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088199|gb|EAR67309.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 236 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 100/210 (47%), Gaps = 21/210 (10%) Query: 27 EGFNSLEF----EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82 EGF+S+ EE L+ +R + + ++ G+ ++ IR S ++ ++ Sbjct: 26 EGFSSIHTAYTAEEALECVSRHPIDIVVLDVMLPGQSGFDICPKIREISDAYILFLTARV 85 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNRAETGPIRVFS 135 S L F G DD + KP + EI AR+ A RR LK + + + G + Sbjct: 86 SDLDVLTGFAIGGDDYITKPFNPLEIAARIKARLRRNQAPSPALKEAGRKHDFGRFILDE 145 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 + D V+G+ P + +L+YL + ++KTQ+ A++G FD V++N V HI Sbjct: 146 EAGDLIVEGKAVQTPAQVFLLLQYLCQHPNTVISKTQMLEAVWG-FDSFVDDNTVTVHIR 204 Query: 196 KLRKKLRNKLGFDP-----VDSKRFLGYSI 220 ++R+++ DP + + R LGY + Sbjct: 205 RIRERIEK----DPSHPELLVTVRGLGYKL 230 >gi|307706360|ref|ZP_07643172.1| response regulator [Streptococcus mitis SK321] gi|307708503|ref|ZP_07644968.1| transcriptional regulatory protein CiaR [Streptococcus mitis NCTC 12261] gi|307615419|gb|EFN94627.1| transcriptional regulatory protein CiaR [Streptococcus mitis NCTC 12261] gi|307618278|gb|EFN97433.1| response regulator [Streptococcus mitis SK321] Length = 224 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K + N G I V +V+ L Sbjct: 91 FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGNIVVNLSTNTVKVEDTPVEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + KTQIF ++G FD +VVE ++SK+RKKL+ + Sbjct: 151 LGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTTFAEN 209 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 210 LQTLRSVGY 218 >gi|304439740|ref|ZP_07399638.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371727|gb|EFM25335.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 225 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 83/157 (52%), Gaps = 5/157 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLKVSNNR 125 I+ +P++ +S L F+ G+DD V KP +E++AR+ I R K+++NR Sbjct: 67 IKKTKNIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVTRNKKLNDNR 126 Query: 126 A-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E +++ DGR V GE L +E +L YL N+ +++ Q+ + ++G +D Sbjct: 127 VMEFEGLKIDLDGRSVSVDGERVDLTPKEYELLTYLAKNKNIALSREQLLNQVWG-YDFY 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ V++HI LR +++ F + + R +GY + Sbjct: 186 GDDRTVDTHIKMLRNSIKHYRKF--IVTVRGVGYKFE 220 >gi|317052735|ref|YP_004113851.1| response regulator receiver [Desulfurispirillum indicum S5] gi|316947819|gb|ADU67295.1| response regulator receiver [Desulfurispirillum indicum S5] Length = 224 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 5/148 (3%) Query: 61 LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE RI++ S++P+I IS Q + G DD + KP + + A+V A+ R Sbjct: 62 LEFLRILKNSVERSEIPVIIISAKSGEQDIVTGLSLGADDYITKPFSMKVLKAKVDAVLR 121 Query: 118 RLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R +NR G I + + V G L +E +L + K + Q+ S+ Sbjct: 122 RALHHDNRTVAYGSISIDMETHKAYVDGNEVVLTMKEFELLHLFLKRPKKVFHRNQLLSS 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204 I+G +D V V++HIS LRKKL +K Sbjct: 182 IWG-YDSEVYTRTVDAHISSLRKKLGDK 208 >gi|221231598|ref|YP_002510750.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|220674058|emb|CAR68571.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] Length = 224 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K + N G I V +V+ L Sbjct: 91 FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGNIVVNLSTNTVKVEDTPVEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + KTQIF ++G FD +VVE ++SK+RKKL+ + Sbjct: 151 LGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTTFAEN 209 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 210 LQTLRSVGY 218 >gi|156743599|ref|YP_001433728.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156234927|gb|ABU59710.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 226 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 23/171 (13%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 ++ R IR S VP+I ++ LQ + G DD + KP E+LARV A+ RR Sbjct: 61 DICRQIRRMSDVPIIFVTGSGQLQDRVTGLQIGGDDYLVKPFEPAELLARVEAVLRRRNS 120 Query: 119 ------LKVSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 ++S PI +F DGR L E R+L YLM N G+ ++ Sbjct: 121 DMVNPVTRISQGPLTLDPIEHTVLFEDGRH-------VVLTPIEFRLLYYLMQNSGRVLS 173 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218 QI + ++G +D E N+V ++ +LR K+ + G P + + R LGY Sbjct: 174 PDQILNKVWG-YDYEGESNLVAVYVRRLRAKIESD-GESPRHIITVRNLGY 222 >gi|322376362|ref|ZP_08050855.1| DNA-binding response regulator CiaR [Streptococcus sp. M334] gi|321282169|gb|EFX59176.1| DNA-binding response regulator CiaR [Streptococcus sp. M334] Length = 224 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K + N G I V +V+ L Sbjct: 91 FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGNIVVNLSTNTVKVEDNPVEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + KTQIF ++G FD +VVE ++SK+RKKL+ + Sbjct: 151 LGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTTFAEN 209 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 210 LQTLRSVGY 218 >gi|292493049|ref|YP_003528488.1| response regulator receiver [Nitrosococcus halophilus Nc4] gi|291581644|gb|ADE16101.1| response regulator receiver [Nitrosococcus halophilus Nc4] Length = 219 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 79/148 (53%), Gaps = 7/148 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGP 130 +P++ ++ + L+ +G DD ++KP H E+L RV A+ RR V++ R E G Sbjct: 73 LPVLILTARDAWAERLEGLRAGADDYLSKPFHPDELLLRVQAVLRRSHGAVNSPRLEVGG 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + D + + + L R E R+L M + GK +++ Q+ +Y E + NV+ Sbjct: 133 LALDEDRQSIWRGDQEYELTRGEFRLLRCFMLHPGKLLSRMQLNEHLYDGESER-DSNVL 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E HI++LR+ KLG ++++R GY Sbjct: 192 EVHINRLRR----KLGHQVIETRRGQGY 215 >gi|302523820|ref|ZP_07276162.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302432715|gb|EFL04531.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 229 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 28/224 (12%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ A V++ G +LE E+ ++ A D+ ++ L G ++ + +R Sbjct: 21 LRKEGFTA-----AVAVTGQQALE--EFDRNGA--DIVLLDLMLPGMSGT--DVCKQLRQ 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-- 127 S VP+I ++ S + + G DD V KP RE++ARV A+ RR + E Sbjct: 70 RSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGEPGSDGELA 129 Query: 128 -----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 GP+R+ + V G LP +E +LEYL+ N G+ + + Q+ ++G D Sbjct: 130 PLVLSAGPVRMDVERHVVTVDGGEVSLPLKEFDLLEYLLRNVGRVLTRGQLIDRVWG-AD 188 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 + ++ H+ K+LR+K+ DP + R LGY + Sbjct: 189 YVGDTKTLDVHV----KRLRSKIEPDPGSPRHLVTVRGLGYKFE 228 >gi|239626319|ref|ZP_04669350.1| response regulator receiver protein [Clostridiales bacterium 1_7_47_FAA] gi|239516465|gb|EEQ56331.1| response regulator receiver protein [Clostridiales bacterium 1_7_47FAA] Length = 234 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 3/156 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126 R P+I + + +D D+G DD + KP E+LAR+ A+ RR ++ RA Sbjct: 74 RMDITTPVIITTALDGVNDRIDGLDAGADDYLVKPYAAGELLARIRAVTRRPGRLEQGRA 133 Query: 127 ET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 +T I + +D R+ L RRE ++EYLM N G+ + + I S I+G D V Sbjct: 134 KTFSNITMDTDRRELAGPSGTVSLSRREAALMEYLMRNAGQVLPRGLILSYIWG-PDSEV 192 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E+ ++++I LR++L+ + + +GY ++ Sbjct: 193 EDGNLDNYIYFLRRRLKAVGTAAQIKTVHGIGYRLE 228 >gi|229016644|ref|ZP_04173581.1| Two-component response regulator [Bacillus cereus AH1273] gi|229022859|ref|ZP_04179379.1| Two-component response regulator [Bacillus cereus AH1272] gi|228738394|gb|EEL88870.1| Two-component response regulator [Bacillus cereus AH1272] gi|228744634|gb|EEL94699.1| Two-component response regulator [Bacillus cereus AH1273] Length = 218 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 58 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E G+ L +E +L +L + G+ ++ Q+ ++ Sbjct: 118 KQEQQEEIQFGPILINEKSRRIETDGQAVSLTVKEFDLLYFLCQHNGQVFSREQLLEKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199 >gi|119025586|ref|YP_909431.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|154487046|ref|ZP_02028453.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis L2-32] gi|118765170|dbj|BAF39349.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|154084909|gb|EDN83954.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis L2-32] Length = 243 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 20/172 (11%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI + P++ ++ Q + G DD V KP E++AR+ AI RR + Sbjct: 71 RIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TQQ 127 Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E PI + D D G+ L E ++L YLM N G+ ++K QI ++ Sbjct: 128 QVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLR---------NKLGFDP-VDSKRFLGYSI 220 +D + +VES+IS LRKK+ +K P +++KR +GY I Sbjct: 188 Q-YDWGGDAAIVESYISYLRKKVDGIVIEDENGDKHKVTPLIETKRGIGYMI 238 >gi|168209202|ref|ZP_02634827.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170712621|gb|EDT24803.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] Length = 222 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 3/158 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121 + R IR S VP+I ++ S + + G DD + KP + + +LAR+A++ RR + Sbjct: 63 ICREIRKDSNVPIIIVTSRDSDMDEIMSMNLGADDFITKPYNTQVLLARIASLLRRTYSL 122 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S T G +++ +G+ L + E +IL +L+ N+G V++ + ++ Sbjct: 123 SEQEVLTYGDLKLNLSNGTVSCRGKEEELTKNELKILSHLLKNKGNVVSREDLMDYMWN- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D V++N + ++++LRKKL ++++R LGY Sbjct: 182 SDIFVDDNTLSVNVTRLRKKLEEVGVKGAIETRRGLGY 219 >gi|221068907|ref|ZP_03545012.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220713930|gb|EED69298.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 235 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 5/157 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE- 127 A S VP++ +S + + G DD + KP RE+LAR A+ RR K A Sbjct: 77 AGSIVPVLVLSARGEEMDKVLGLELGADDYLTKPFSPRELLARTRALLRRSKQFQPAAPA 136 Query: 128 --TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 +++ G+ + L RRE ++L+ L+ G+ +++ + I+GL E+ Sbjct: 137 QLAKALQIDEQGQRALIHSRALDLTRREYQLLQSLVNAAGRILSRDALLEQIWGLDSEST 196 Query: 186 EENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + V++HI LR KLR +L + + + R LGYS++ Sbjct: 197 DRT-VDTHIKTLRAKLRERLPDQELIVTHRGLGYSLN 232 >gi|28377207|ref|NP_784099.1| response regulator [Lactobacillus plantarum WCFS1] gi|28270038|emb|CAD62938.1| response regulator [Lactobacillus plantarum WCFS1] Length = 234 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 28/227 (12%) Query: 16 IALFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV------------- 60 I + D+G SL G+ L+FE++ A ++A+E + + E + Sbjct: 5 ILIVEDEG-SLSGYLTKELQFEDFNVLVAANGLAAMETYQAHQNELLLILLDWMLPKLDG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR H QVP+I ++ + + D+G DD + KP E+LAR+ I RR++ Sbjct: 64 MEVLRRIRKHDQVPVIIMTARDYVGDKVAGLDNGADDYITKPFEIEELLARIRVIQRRIE 123 Query: 121 VSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N+ E + D R Q EV L RE +L++ +A+ + + + Sbjct: 124 ---NQVEPNQVYQLDDVQLDTKAHRVTNGQEEV-TLTHREYDLLQFFLAHPDEVFTRDDL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D ++NVV+ ++ LR K+ + + R +GY + Sbjct: 180 LDQVWGA-DFLGQQNVVDVYVGYLRNKITTTGASPLIQTVRGVGYKL 225 >gi|269139404|ref|YP_003296105.1| two-component transcriptional regulator, winged helix family [Edwardsiella tarda EIB202] gi|267985065|gb|ACY84894.1| two-component transcriptional regulator, winged helix family [Edwardsiella tarda EIB202] gi|304559300|gb|ADM41964.1| Transcriptional regulatory protein PhoP [Edwardsiella tarda FL6-60] Length = 224 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 2/150 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P++ ++ S Q + ++G DD V KP H E+LAR+ A+ RR +++ P Sbjct: 73 LPILVLTARESWQEKVAVLEAGADDYVTKPFHLEEVLARMQALMRRNSGLASQIISMPPF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + R+ V + L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 133 QADLSRRELRVNETLIKLTAFEYTIIETLIRNSGKVVSKDALMLQLYP-DAELRESHTID 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +LRKKL+N+ D + + R GY D Sbjct: 192 VLMGRLRKKLQNEYPGDVITTVRGQGYRFD 221 >gi|257092800|ref|YP_003166441.1| winged helix family two component transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045324|gb|ACV34512.1| two component transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 220 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 15/224 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +L++D ++ DG + + + E ++ D+ ++ L G+ G V Sbjct: 3 VLLVEDDPMIGKSVQQGLRQDGHTADWLRDGQQAELALATTPYDILLLDLGLPGRSGLDV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R+ R+ + +P++ I+ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 63 LT--RLRRSANSIPVLVITARDAIADRIRGLDAGADDYLVKPFDLDELSARMRAVQRR-- 118 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RA E GP+R+ + + G L RE +L+ L+ G +++ ++ Sbjct: 119 -HAGRAEPVIENGPLRMNPATHELTLDGTPVTLSAREFALLQALLEQPGVPLSRARLEEK 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG DE +E N VE +I LR+ KLG + + + R +GY + Sbjct: 178 LYGWGDE-IESNAVEVYIHSLRR----KLGAEQIKNIRGVGYLV 216 >gi|227485274|ref|ZP_03915590.1| response regulator [Anaerococcus lactolyticus ATCC 51172] gi|227236734|gb|EEI86749.1| response regulator [Anaerococcus lactolyticus ATCC 51172] Length = 237 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 6/162 (3%) Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LK 120 R IR S VP+I +S + + G DD V+KP +LA++ AI RR K Sbjct: 77 TRKIRDISNVPIIFLSSKEDTMNKIMAMEMGADDFVSKPFEIDLLLAKIKAILRRAYDYK 136 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +R E + + V L + E +ILE LM N+G V++ ++ ++++ Sbjct: 137 ENLSRLEIRGLILDLKSMTVSVGENSLDLSKNEFKILETLMVNKGNVVSREKLMTSLWST 196 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 D +++N + +IS+LRK L LG D + +K+ GY ++ Sbjct: 197 -DIYIDDNTLTVNISRLRKSLAG-LGIGDFIKTKQGYGYYVE 236 >gi|37521380|ref|NP_924757.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212377|dbj|BAC89752.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 223 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + D A+ +G +E E L SS D+ ++ L G L Sbjct: 3 LLLVEDEAELADPLAAMLKREGHVVETSYDGEHAWDLLSSQSFDLVILDWML--PGHSGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 +L R +RA + VP++ ++ ++ + L F++G DD + KP RE+LARV A+ RR Sbjct: 61 DLCRRLRAGGRSVPVLMLTARDTIDSKLAGFEAGADDYLVKPFELRELLARVRALLRRPP 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ G + + + G L +E ++LEY M + G+ + QI ++ Sbjct: 121 ERQSDELRLGDLVLDVSNKLVRRAGRPIDLSAKEYQLLEYFMRHPGQLLTHEQILEHVW- 179 Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D E NVV + + LR+K+ G + + GY Sbjct: 180 --DSGAEPNSNVVAAQVKLLRRKIDKDAGTALIHTVYGQGY 218 >gi|330964534|gb|EGH64794.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. actinidiae str. M302091] Length = 223 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 75/137 (54%), Gaps = 3/137 (2%) Query: 67 IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +RA S+ +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + R Sbjct: 66 LRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLGGER 125 Query: 126 AETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + + + D R + E+ L RE+ +LE L+A G+ ++K Q+ + ++GL DE Sbjct: 126 QQRCGVLAYDLDTRRFTLSDELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFGL-DEE 184 Query: 185 VEENVVESHISKLRKKL 201 + +E ++ +LRKKL Sbjct: 185 ASPDAIEIYVHRLRKKL 201 >gi|259047938|ref|ZP_05738339.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259035358|gb|EEW36613.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 227 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R +R++ P++ ++ L+ + + G DD + KP E+LARV ++ RR Sbjct: 60 IEVVRELRSNGIHTPVLMLTAKSQLEDKVTGLEEGADDYLTKPFEGAELLARVKSLLRRP 119 Query: 120 KVSNNRAET-GPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V T G + + D +G+V L +E +++EY M N + ++ I + Sbjct: 120 NVFVASVMTLGNVELNRDTFTMMTSKGQVL-LNNKEFQLMEYFMMNSNQVLSTDLIMEKV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +GL EA E NVV +IS LRKKL + S R LGY + Sbjct: 179 WGLDSEA-EINVVWVNISSLRKKLATIEADVTIKSARGLGYQL 220 >gi|229087145|ref|ZP_04219295.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] gi|228696213|gb|EEL49048.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] Length = 238 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 11/138 (7%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSN---------NRAETGPIRVFSDGRDPEVQG 144 G DD + KP RE++ARV AI RR K+ + N +++ + + Q Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRTKLQDEQVPEVQDENSIHIVDLKILPEFYEAYFQE 155 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RN 203 E L +E +L YL N+G+ + + Q+ SA++ +D A + +V+ HIS LR K+ +N Sbjct: 156 EKLELTPKEFELLVYLARNKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEKN 214 Query: 204 KLGFDPVDSKRFLGYSID 221 + + R LGY ++ Sbjct: 215 TKKPTYIKTIRGLGYKLE 232 >gi|78061618|ref|YP_371526.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77969503|gb|ABB10882.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 220 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 12/157 (7%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R +P I I+ + + DSG DD + KP E+LAR+ A+ RR RA+ Sbjct: 68 RRDENLPAIIITARDGVPDRIAGLDSGADDYLVKPFELDELLARIRAVNRR---HAGRAQ 124 Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 T GP+R+ + + PL +E +L LM + G +++ Q +Y + E Sbjct: 125 TTLVIGPLRLDPVKHLVWLNDDEVPLSPKEFVLLHELMRDPGAVISREQFEERLYS-WGE 183 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E N V+ HI LRK KLG D + + R +GY I Sbjct: 184 EIESNAVQVHIHNLRK----KLGHDMIRTVRGVGYRI 216 >gi|73539891|ref|YP_294411.1| DNA-binding response regulator CreB [Ralstonia eutropha JMP134] gi|72117304|gb|AAZ59567.1| two component transcriptional regulator, winged helix family [Ralstonia eutropha JMP134] Length = 226 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 22/231 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLE----GFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57 ++I+D + + D DG+++E G ++LE R A + ++ G Sbjct: 6 ILVIEDESAIADTIDYALSTDGMAVERCALGGDALE---------RLRTQAFDLVILDVG 56 Query: 58 EKVL---ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 L E+ R +R + VP+I ++ + + G DD V KP RE+ ARV Sbjct: 57 LPDLSGFEVCRTLRTFTDVPVIFLTARHDEIDRVVGLEIGADDYVVKPFSPRELAARVRV 116 Query: 115 IYRRLKVSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 I RR AE VF+ DG G L R E R+L ++ + G+ ++ Sbjct: 117 ILRR-TARQPVAEPASQSVFTVDNDGARVAFHGHWLELTRYEYRMLALMLRHPGRIYSRA 175 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 Q+ ++ + ++ V++HI +R KLR DP+ + R +GYSI+ Sbjct: 176 QLMDEVWHDAPDTIDRT-VDTHIKTVRAKLRALDAASDPIRTHRGMGYSIE 225 >gi|310659563|ref|YP_003937284.1| DNA-binding response regulator in two-component system with yedv [Clostridium sticklandii DSM 519] gi|308826341|emb|CBH22379.1| DNA-binding response regulator in two-component system with YedV [Clostridium sticklandii] Length = 231 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 84/170 (49%), Gaps = 14/170 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R S +P++ ++ + + D G DD + KP E+LAR+ I++R+ Sbjct: 63 VEVLRRLRQKSDMPVVMLTAKDEMNDKILGLDIGADDYMTKPFAIEELLARIRVIFKRM- 121 Query: 121 VSNNRAETGP----------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 +N + P + + D + + L +RE +L+Y+M N+ + + Sbjct: 122 --DNYKASKPQNDSILRIKGVNLDIDRYTVTYKEKNIDLTKREFELLKYMMQNKNLVITR 179 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I + ++G ++ + NVV+ +I LR K+ ++ G + + R +GY I Sbjct: 180 EMILAKVWG-YEYMGDTNVVDVYIRYLRSKIDDQFGIKLIHTIRGVGYQI 228 >gi|291482776|dbj|BAI83851.1| hypothetical protein BSNT_00666 [Bacillus subtilis subsp. natto BEST195] Length = 289 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 19/197 (9%) Query: 12 KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71 K+G+ A F DG LEG+ E W D+ ++ L + + R IR S Sbjct: 84 KEGFEAEFVHDG--LEGYQRFTEENW-------DLIILDIMLPSMDG--VTICRKIRETS 132 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNR 125 VP+I ++ + + F+ G DD V KP ++AR+ A+ RR K + + Sbjct: 133 TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKATGKAVIDEDM 192 Query: 126 AETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 ET + R+ + GE V L +E +L YL+ N + ++ Q+ ++G + Sbjct: 193 IETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLLEQVWG-YQFY 251 Query: 185 VEENVVESHISKLRKKL 201 +E V+ HI +LRKKL Sbjct: 252 GDERTVDVHIKRLRKKL 268 >gi|170764175|ref|ZP_02633582.2| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170661077|gb|EDT13760.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] Length = 228 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 3/158 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121 + R IR S VP+I ++ S + + G DD + KP + + +LAR+A++ RR + Sbjct: 69 ICREIRKDSNVPIIIVTSRDSDMDEIMSMNLGADDFITKPYNTQVLLARIASLLRRTYSL 128 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S T G +++ +G+ L + E +IL +L+ N+G V++ + ++ Sbjct: 129 SEQEVLTYGDLKLNLSNGTISCRGKEEELTKNELKILSHLLKNKGNVVSREDLMDYMWN- 187 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D V++N + ++++LRKKL ++++R LGY Sbjct: 188 SDIFVDDNTLSVNVTRLRKKLEEVGVKGAIETRRGLGY 225 >gi|91787833|ref|YP_548785.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91697058|gb|ABE43887.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 223 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPI 131 +P++ ++ S Q + ++G DD + KP + E+ AR+ A+ RR LK +++ GP+ Sbjct: 73 IPILILTARGSWQDKVVGLEAGADDYLVKPFEYPELAARLKALLRRSLKTASDVLTLGPL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + + G L E R+LEYL+ R V K + +Y E + NV+E Sbjct: 133 SIDLSAQAARLNGAALELTAFEYRLLEYLVRQRPGIVTKQALSDYLYP-HGEDRDSNVLE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +LR+KL P+++ R GY Sbjct: 192 VLVGRLRRKLDPDGSLGPIETVRGRGY 218 >gi|28871373|ref|NP_793992.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. tomato str. DC3000] gi|213971133|ref|ZP_03399252.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. tomato T1] gi|301381851|ref|ZP_07230269.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. tomato Max13] gi|302059020|ref|ZP_07250561.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. tomato K40] gi|302132819|ref|ZP_07258809.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28854624|gb|AAO57687.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. tomato str. DC3000] gi|213924122|gb|EEB57698.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. tomato T1] gi|330877449|gb|EGH11598.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|331015588|gb|EGH95644.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 223 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 75/137 (54%), Gaps = 3/137 (2%) Query: 67 IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +RA S+ +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + R Sbjct: 66 LRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLGGER 125 Query: 126 AETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + + + D R + E+ L RE+ +LE L+A G+ ++K Q+ + ++GL DE Sbjct: 126 QQRCGVLAYDLDTRRFTLSDELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFGL-DEE 184 Query: 185 VEENVVESHISKLRKKL 201 + +E ++ +LRKKL Sbjct: 185 ASPDAIEIYVHRLRKKL 201 >gi|332093078|gb|EGI98142.1| transcriptional activator protein irlR [Shigella boydii 5216-82] Length = 223 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 42 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 101 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 102 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNICITLTRKEFQLLWLLAS 161 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 162 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 >gi|327474015|gb|EGF19428.1| DNA-binding response regulator [Streptococcus sanguinis SK408] Length = 224 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K + N G + Sbjct: 73 TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLSYGDV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V G+ L +E +L Y + N+ + KTQIF ++G FD +VVE Sbjct: 133 TVNLSTNSTTKAGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTVSVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + R +GY Sbjct: 192 VYVSKIRKKLKGTAFAKNLHTLRSVGY 218 >gi|326387442|ref|ZP_08209051.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326208098|gb|EGD58906.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 229 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 88/175 (50%), Gaps = 7/175 (4%) Query: 52 FLIGKGEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108 ++IG G +E+ R +R A + VP+I ++ + ++G DD V KP RE+ Sbjct: 55 WMIG-GTSGIEVCRRLRRQKATAHVPIIMLTARSDEDDRVRGLETGADDYVTKPFSPREL 113 Query: 109 LARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 +ARV A+ RR++ ++ G + + + + + E R+L + M + G+ Sbjct: 114 IARVGAVLRRVRPALAGETITVGDLSLDPTAHRVTRKAQSIKIGPTEFRLLRHFMEHPGR 173 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ A++G + +E V+ HI +LR+ + DPV + R GY+++ Sbjct: 174 VFSRGQLLDAVWGSGSD-IELRTVDVHIRRLRQAIAIPGAPDPVRTVRSAGYALE 227 >gi|89072828|ref|ZP_01159385.1| Response regulator [Photobacterium sp. SKA34] gi|89051350|gb|EAR56805.1| Response regulator [Photobacterium sp. SKA34] Length = 219 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 10/153 (6%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 P++ +S L +D ++G DD + KP E++ARV A RR N Sbjct: 72 NCPVVILSARNELTQRVDGLNAGADDYLTKPFQMVELVARVRAQLRR-STGNASPVIQAG 130 Query: 132 RVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 + D R +V +G++ L E ++L YLM N K +++T++ IY FD + N Sbjct: 131 NLSLDTRTSKVTWEGQIIDLTALEFKVLSYLMHNTDKVISRTELVEHIYKQDFDR--DSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E I ++R+ K+G D + + R LGY I+ Sbjct: 189 TIEVFIGRIRR----KIGNDVIKTVRGLGYRIN 217 >gi|225569381|ref|ZP_03778406.1| hypothetical protein CLOHYLEM_05465 [Clostridium hylemonae DSM 15053] gi|225161589|gb|EEG74208.1| hypothetical protein CLOHYLEM_05465 [Clostridium hylemonae DSM 15053] Length = 230 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 85/162 (52%), Gaps = 5/162 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ R IR S V ++ ++ ++ +D+G DD + KP ++++V A RR + Sbjct: 61 LDFCREIRRVSDVFILFLTALDQEVDIVNGYDTGADDYITKPFSLMVLISKVNAFMRRRE 120 Query: 121 VSNNRAE--TGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + T P D ++ +V +GE PL ++E ++L Y M + + ++K QI A Sbjct: 121 HTGGEGTVLTAPDLTL-DCKEMKVFIKGEETPLSKKEMQLLAYFMEHPRQIISKEQILEA 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ + + V++N V +IS+L+KKL + + + R +GY Sbjct: 180 VWDVDGQFVDDNTVPVNISRLKKKLGGDSETEYIKNIRGIGY 221 >gi|224588354|gb|ACN58978.1| two-component response regulator [uncultured bacterium BLR19] Length = 226 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 2/153 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 + ++ +I IS SL+ + + G DD + KP H E+ AR+ ++ RR +A Sbjct: 69 KRNNNTGVIIISAKSSLEDKITGLEIGADDYLTKPFHLSELNARLKSVLRRRMFDGEQAI 128 Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 I++ D EV G+ L ++E +L Y ++N+ K + K I ++G + + Sbjct: 129 IFNEIKIAPDTMKVEVNGKPIVLTKKEYDLLIYFISNKTKILPKETIVEHLWGDYISTSD 188 Query: 187 E-NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + +H+S LRKKL + G D + + +GY Sbjct: 189 SYDFLYTHVSNLRKKLMDNGGEDYIKTVYKIGY 221 >gi|222087224|ref|YP_002545759.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221724672|gb|ACM27828.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 219 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 84/166 (50%), Gaps = 20/166 (12%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 L ++ R + P+I ++ + ++ +SG DD + KP + E+ AR+ A+ RR Sbjct: 63 LKKLRRKPDETPVIILTARDQISDRIEGLNSGADDYLVKPFNLGELSARILAVARRYSGS 122 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ ++ + RV DG+D + G RE +L+ L+ G ++K QI Sbjct: 123 PQPTIRFADLEIDQPQRRVRLDGKDVVLTG-------REWAVLDLLVTRPGAIISKDQIE 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A+Y F +E N VE ++S+LRK K+G D + + R +GY + Sbjct: 176 EALYA-FGSEIESNTVEVYVSRLRK----KIGKDRIRTARGVGYCL 216 >gi|254447699|ref|ZP_05061165.1| two component transcriptional regulator, winged helix family [gamma proteobacterium HTCC5015] gi|198263042|gb|EDY87321.1| two component transcriptional regulator, winged helix family [gamma proteobacterium HTCC5015] Length = 229 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 22/209 (10%) Query: 27 EGFN------SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80 EGFN E EEWL + + + G ++ + RI + ++QVP+I ++ Sbjct: 25 EGFNVHWAQLGGEAEEWLSCHSADGIVLDVGLPDTNGFELCK--RIRQNNTQVPIIFLTA 82 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGR 138 + + G DD V KP RE++AR+ AI RR S++ A P + D Sbjct: 83 RKEEVDRIVGLEIGGDDYVVKPFSPRELVARIKAILRRASRSDDIAFQSVAPSLMQHDAN 142 Query: 139 DPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY----GLFDEAVEENVVES 192 + GE L E RIL L+ G +++ Q+ A + FD A V++ Sbjct: 143 RQCIVFSGEAVDLTLYEYRILLALLERAGHVLSRAQLMDAAWSDPSASFDRA-----VDT 197 Query: 193 HISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 HI +R +L++ + DP+ + R LGYS+ Sbjct: 198 HIKGIRARLKSIRPDLDPIRTHRGLGYSL 226 >gi|126642782|ref|YP_001085766.1| transcriptional regulator [Acinetobacter baumannii ATCC 17978] Length = 168 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 11/166 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR + P++ IS LQ +D + G DD + KP E+LAR+ A+ RR Sbjct: 5 MQVLKQIRQRAATPVLIISARDQLQNRVDGLNLGADDYLIKPYEFDELLARIHALLRRSG 64 Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V A E+G + + + +G+ L RE IL LM + K +K + Sbjct: 65 VEAQLASQDQLLESGDLVLNVEQHIATFKGQRIDLSNREWAILIPLMTHPNKIFSKANLE 124 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y FD V N +E ++ LR KLG D + + R LGY + Sbjct: 125 DKLYD-FDSDVTSNTIEVYVHHLRA----KLGKDFIRTIRGLGYRL 165 >gi|332654953|ref|ZP_08420695.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] gi|332516296|gb|EGJ45904.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] Length = 229 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 21/202 (10%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRI 66 +AL K+GY +DG S S+ + L + D++ ++ L I G +++ R Sbjct: 19 QALKKEGYSVDCCNDGES-----SMIYA--LNTDYGYDLAIVDRMLPIIDGLTIIKAMR- 70 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R Q+P+I I+ +L +D DSG DD + KP H RE++ARV A+ RR Sbjct: 71 -RKQIQIPVIIITGMSALDDRVDGLDSGADDYLIKPFHIRELMARVRALTRR---PQQIQ 126 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E G + ++D R G+ L +E +L LM ++ Q+ ++G Sbjct: 127 EMGMLS-YADLHFDYPNRKVTCNGQELILTAKETELLSVLMKQPETSFSREQLVLKVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLR 202 + +E V+++IS LRK+LR Sbjct: 185 SNADIEPGNVDNYISFLRKRLR 206 >gi|210614641|ref|ZP_03290252.1| hypothetical protein CLONEX_02466 [Clostridium nexile DSM 1787] gi|210150631|gb|EEA81640.1| hypothetical protein CLONEX_02466 [Clostridium nexile DSM 1787] gi|295108131|emb|CBL22084.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 229 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 98/202 (48%), Gaps = 21/202 (10%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRI 66 +AL K+GY +DG S S+ + L + D++ ++ L I G +++ R Sbjct: 19 QALKKEGYSVDCCNDGES-----SMIYA--LNTDYGYDLAIVDRMLPIIDGLTIIKAMR- 70 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R Q+P+I I+ +L +D DSG DD + KP H RE++ARV A+ RR Sbjct: 71 -RKQIQIPVIIITGMSALDDRVDGLDSGADDYLIKPFHIRELMARVRALTRR---PQQIQ 126 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E G + ++D R G+ L +E +L LM ++ Q+ ++G Sbjct: 127 EMGMLS-YADLHFDYPNRKVTCNGQELILTAKETELLSVLMKQPETSFSREQLVLKVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLR 202 + +E V+++IS LRK+LR Sbjct: 185 SNADIEPGNVDNYISFLRKRLR 206 >gi|205374546|ref|ZP_03227342.1| response regulator PhoP [Bacillus coahuilensis m4-4] Length = 238 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 73/139 (52%), Gaps = 12/139 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----------ETGPIRVFSDGRDPEVQ 143 G DD + KP RE++AR+ AI RR + A + G ++V+ + + + Sbjct: 96 GADDYMTKPFSPREVVARIKAILRRTQTLIQSAVEEQDPKDYLKVGELKVYPEHYEAFIG 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202 E+ L +E +L YL N+G+ + + Q+ SA++ +D A + +V+ HIS LR K+ + Sbjct: 156 EELLELTPKEFELLLYLTENKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQ 214 Query: 203 NKLGFDPVDSKRFLGYSID 221 N + + R LGY ++ Sbjct: 215 NTKKPIYIKTIRGLGYKLE 233 >gi|170759073|ref|YP_001785608.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169406062|gb|ACA54473.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 288 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR HS+VP+I IS S + ++G DD + KP + +LA++ + RR+ S + Sbjct: 123 IRNHSKVPIIFISARDSDMDQVMAIENGGDDFITKPFSYYVLLAKIKGVLRRVYGSYAKN 182 Query: 127 ET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +T G + ++++ E +G L + E +L YL N K V++ + ++ Sbjct: 183 DTDFFKIGDLILYTNKSILEFRGRKTELSKNEFSLLLYLFKNINKIVSRDTLLEILWSDT 242 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +++N + ++++LRK+L + +++KR GY + Sbjct: 243 D-FIDDNTLSVNVTRLRKRLEEVGITNAIETKRGQGYML 280 >gi|269216634|ref|ZP_06160488.1| DNA-binding response regulator CiaR [Slackia exigua ATCC 700122] gi|269130163|gb|EEZ61245.1| DNA-binding response regulator CiaR [Slackia exigua ATCC 700122] Length = 234 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 4/118 (3%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--PIRVFSDGRDPEVQGEVFPLP 150 +G DD + KP E+L R+ AI RR S R E + ++ D V L Sbjct: 101 AGADDYLTKPFAKDELLLRIEAILRRCTDSFERKEFSFKDLVLYPDMHAAYVGDAEVKLK 160 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 R+ +LE+L++ +G+ V+K+QIF ++G + NVVE ++S +RK+L+ G+D Sbjct: 161 GRQYDVLEFLVSRKGQLVSKSQIFDRVWGFMSDT-STNVVEVYVSAVRKQLK-PFGYD 216 >gi|262373903|ref|ZP_06067180.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262310914|gb|EEY92001.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 240 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 15/174 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R Q PL+ ++ + + G DD KP REI+AR+ AI+RR++ Sbjct: 64 FEVCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRME 123 Query: 121 VSNNRAETG--------PIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKR 167 + + P++ + +P + G++ L R E R+L L+ + K Sbjct: 124 IQAQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQHPEKV 183 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ Q+ I+ + ++ E V++HI LR+KL+ DP+ + R GYS+ Sbjct: 184 FSRQQLMDHIWEHPEHSL-ERTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSL 236 >gi|229013792|ref|ZP_04170920.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] gi|228747461|gb|EEL97336.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] Length = 239 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 12/139 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----------ETGPIRVFSDGRDPEVQ 143 G DD + KP RE++ARV AI RR K+ + G +++ + + Q Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVSESPDEESIKIGELKILPEFYEAYFQ 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202 G L +E +L YL N+ + + + Q+ SA++ +D A + +V+ HIS LR K+ + Sbjct: 156 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQ 214 Query: 203 NKLGFDPVDSKRFLGYSID 221 N + + R LGY ++ Sbjct: 215 NTKKPTYIKTIRGLGYKLE 233 >gi|87200295|ref|YP_497552.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135976|gb|ABD26718.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 229 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 89/175 (50%), Gaps = 7/175 (4%) Query: 52 FLIGKGEKVLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108 ++IG G +E+ R +R + + VP+I ++ + + G DD V KP RE+ Sbjct: 55 WMIG-GTSGIEVCRRLRRNKETAHVPIIMLTARSDEDDRIRGLEIGADDYVTKPFSPREL 113 Query: 109 LARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 +ARV A+ RR++ ++ G + + +G+ + E R+L++ M + G+ Sbjct: 114 IARVGAVLRRVRPALAGETITVGDLSLDPTAHRVSRRGQPMKVGPTEFRLLKHFMEHPGR 173 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ A++G + +E V+ HI +LR+ + DPV + R GY+++ Sbjct: 174 VFSRGQLLDAVWGSGSD-IELRTVDVHIRRLRQAIAVPGAADPVRTVRSAGYALE 227 >gi|312968636|ref|ZP_07782845.1| transcriptional regulatory protein qseB [Escherichia coli 2362-75] gi|312286854|gb|EFR14765.1| transcriptional regulatory protein qseB [Escherichia coli 2362-75] Length = 219 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSQMGFSIDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 L---REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + R + GE L +E +LE LM N G+ + + I +Y Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|311279965|ref|YP_003942196.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308749160|gb|ADO48912.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 224 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%) Query: 58 EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 E L + R R+H +P++ ++ Q ++ +G DD V KP H E+ AR+ A+ Sbjct: 57 EDGLSMIRRWRSHDVSLPILVLTAREGWQDKVEVLGAGADDYVTKPFHIEEVAARIQALM 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR +++ P +V R+ + EV L E I+E L+ N GK V+K + Sbjct: 117 RRNSGLASQVITIPPFQVDLSRRELSIHDEVIKLTAFEYTIMETLIRNSGKVVSKDSLML 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y E E + ++ + +LRKK++ + D + + R GY Sbjct: 177 QLYP-DAELRESHTIDVLMGRLRKKIQAQYAQDVITTVRGQGY 218 >gi|229084387|ref|ZP_04216667.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228698927|gb|EEL51632.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 219 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 4/144 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 58 IEVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117 Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E G IR+ R E GE L +E +L +L + G+ ++ Q+ + Sbjct: 118 KQEEQQEELQFGSIRINEKSRKIETNGETISLTVKEFDLLHFLCEHNGQVFSREQLLEKV 177 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G +D A V++H+ +R KL Sbjct: 178 WG-YDYAGSTRTVDTHVKTMRLKL 200 >gi|254520763|ref|ZP_05132819.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226914512|gb|EEH99713.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 221 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 92/192 (47%), Gaps = 18/192 (9%) Query: 41 SAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLD 89 SA + + AIE F K + V+ LP+ IR S VP+I ++ T + Sbjct: 31 SAEDGMQAIELFKNNKIDLVILDIMLPKANGFVVLNKIRQESNVPVIMLTAMSDDYTQIM 90 Query: 90 FFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAET-GPIRVFSDGRDPEVQGEVF 147 FD DD + KP + R+ A+ RR +KVS N+ G I + +G GE Sbjct: 91 SFDEEADDYITKPFSIIVLHKRIEALLRRGVKVSENKKWCYGDIEIDFEGYSARKNGENI 150 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L +E +++E L+ GK + + QI ++ + +EA + V++ +I +RKKL Sbjct: 151 DLKPKEIKLIELLLKYEGKVLTRAQILDNLWRI-EEAPNDRVIDVYIKNIRKKLL----L 205 Query: 208 DPVDSKRFLGYS 219 D + + + +GY Sbjct: 206 DCIVTVKGIGYK 217 >gi|220926004|ref|YP_002501306.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950611|gb|ACL61003.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 222 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 17/225 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D V A+ + G +++ E E W + + A+ + K + + Sbjct: 3 ILLVEDDPRVARKVAAVLTEAGYAVDHVEDGE-EAWFRGDTEDYDLAVLDLGLPKMDGLA 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R A +P++ ++ + ++ D+G DD + KP E+LARV A+ RR Sbjct: 62 VLKRWRAAGRDLPVLILTARGAWAERVEGIDAGADDYLTKPFAMEELLARVRALLRR--- 118 Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFS 175 + RA +GP V D R V + P L E R L YLM + G+ + T++ Sbjct: 119 AAGRAVPVFISGP--VVLDTRKMRVTADDVPLNLSPLEYRCLSYLMHHAGRVIPPTELME 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y D + N +E + +LR+ KLG D ++++R GY + Sbjct: 177 HLYA-HDHDRDPNALEVLVGRLRR----KLGVDLIETRRGFGYLV 216 >gi|314935479|ref|ZP_07842831.1| DNA-binding response regulator [Staphylococcus hominis subsp. hominis C80] gi|313656044|gb|EFS19784.1| DNA-binding response regulator [Staphylococcus hominis subsp. hominis C80] Length = 221 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 16/220 (7%) Query: 16 IALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRI----- 66 + + DD V E N L + S A++ + +E F + E VL LP Sbjct: 3 VLIVEDDVVIAESLGNELSHWNYEVSIAKQFDNILEEFKTAEPELVLLDINLPTFNGYHW 62 Query: 67 ---IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LK 120 IR S VP+I IS + G DD + KP + +A++ A+ RR L Sbjct: 63 CQEIRKVSNVPIIFISSRTDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLT 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 VSNN ++ D + L E +IL L N GK V +T I + Sbjct: 123 VSNNEMTVKGCKLVVDEATLYYNNDSVQLSFTELQILNKLFQNEGKYVNRTAIIEKCWE- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +++N + ++++LRKKL++ D +++K+ +GY + Sbjct: 182 SENFIDDNTLAVNMTRLRKKLQSIGIVDFIETKKNVGYKV 221 >gi|283783193|ref|YP_003373947.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|298253961|ref|ZP_06977548.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis 5-1] gi|283441704|gb|ADB14170.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|297532104|gb|EFH71079.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis 5-1] Length = 246 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 14/169 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI + +VP++ ++ Q + G DD V KP E++AR+ AI RR + + Sbjct: 71 RIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEPDE 130 Query: 125 RA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + D D G L E ++L YLM N G+ ++K+QI + ++ + Sbjct: 131 ETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ-Y 189 Query: 182 DEAVEENVVESHISKLRKKL----------RNKLGFDPVDSKRFLGYSI 220 D + +VES+IS LRKK+ + + +++KR +GY I Sbjct: 190 DWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMI 238 >gi|212712243|ref|ZP_03320371.1| hypothetical protein PROVALCAL_03329 [Providencia alcalifaciens DSM 30120] gi|212684989|gb|EEB44517.1| hypothetical protein PROVALCAL_03329 [Providencia alcalifaciens DSM 30120] Length = 227 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 84/160 (52%), Gaps = 5/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ + H + P++ ++ + + ++G DD + KP E+ AR+ A+ RR + Sbjct: 68 LAQMRKRHQETPVLLLTANSDVADRVKGLNAGADDYLTKPFDIAELEARIRALLRRSHGN 127 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N ++ F + ++ E L RE +L L RG+ V+KTQ+F ++ L D Sbjct: 128 INESQCFGDLCFHEEGYFSLKMEPLGLTPREYAVLNTLFHRRGRPVSKTQLFEQVFSLSD 187 Query: 183 EAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 EA ++ +E ++ ++RKKL G D +++ R LGY ++ Sbjct: 188 EANLQS-IELYVHRVRKKLA---GSDVNINTLRGLGYRLE 223 >gi|169351289|ref|ZP_02868227.1| hypothetical protein CLOSPI_02068 [Clostridium spiroforme DSM 1552] gi|169292351|gb|EDS74484.1| hypothetical protein CLOSPI_02068 [Clostridium spiroforme DSM 1552] Length = 225 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/225 (23%), Positives = 108/225 (48%), Gaps = 17/225 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIG- 55 ++I+D + D L D+G ++S + + Q + + D+ ++ L G Sbjct: 7 ILIIEDDKTISDELKILLDDNG-----YDSYQLFNFHQVAKKIIEFDPDLVLLDIVLPGT 61 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ +L + IR S +P+I ++ + G DD + KP + +L R+ + Sbjct: 62 NGQTIL---KEIRKESNLPVIMLTSKTGDINEIMSMSYGADDYITKPYNPTLLLLRIETL 118 Query: 116 YRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +R L + SN++ E + + + L + E IL YL+ N GK V++ ++ Sbjct: 119 FRHLDDQGSNDQIEYNQMTINLLKSTLTYKDNEIILSKNELTILYYLIKNHGKIVSRDEL 178 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ + + V++N + +I++LRKK++N D ++++R GY Sbjct: 179 MDHLWD-YSDFVDDNTLTVNINRLRKKMKNLGILDSIETRRKQGY 222 >gi|308049852|ref|YP_003913418.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] gi|307632042|gb|ADN76344.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] Length = 224 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 106/219 (48%), Gaps = 6/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D L+ + G ++ + E+L ++ D++ ++ L E L Sbjct: 3 ILVIEDDPLLCHHLKVRLSELGNQVQASQTASEGEYLANNYPLDIAVVDLGL--PDESGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L + +R + P++ ++ S Q ++ ++G DD + KP E++AR+ A+ RR Sbjct: 61 SLIQRLRDQGKAFPILILTARDSWQDKVEGLNAGADDYLVKPFRIEELMARLNALVRRSA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 G +++ G+ + G++ L E +ILEYLM + + ++K ++ +Y Sbjct: 121 GFIKPEISCGSLKMDLTGKSVTLAGDLLELTAFEYQILEYLMRHHQQVISKQRLLDVLYE 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D + N VE IS+LRKKL + +P+ + R GY Sbjct: 181 --DREGDPNTVEVMISRLRKKLVSGGMNNPIVTIRGQGY 217 >gi|308172233|ref|YP_003918938.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307605097|emb|CBI41468.1| two-component response regulator [YclK] [Bacillus amyloliquefaciens DSM 7] gi|328552043|gb|AEB22535.1| two-component response regulator (YclK) [Bacillus amyloliquefaciens TA208] gi|328910307|gb|AEB61903.1| two-component response regulator [Bacillus amyloliquefaciens LL3] Length = 227 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 32/223 (14%) Query: 12 KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71 K+G+ A F DGV EG+ E+W D+ ++ L + + R IR S Sbjct: 22 KEGFEAEFVHDGV--EGYQRFTEEDW-------DLVILDIMLPSMDG--VTICRKIRETS 70 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV------SNNR 125 VP+I ++ + + F+ G DD V KP ++AR+ A+ RR + S++ Sbjct: 71 SVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYRATGQAVKSDDL 130 Query: 126 AETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 ET + R+ + G+ V L +E +L YL+ N + ++ Q+ ++G + Sbjct: 131 IETACFSINKKTREVFLHGKSVENLTPKEFDLLFYLVQNPRQVFSREQLLEQVWG-YQFY 189 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYSID 221 +E V+ HI +LRKKL + D K FL GY D Sbjct: 190 GDERTVDVHIKRLRKKLSS-------DEKPFLYTVWGVGYKFD 225 >gi|258593609|emb|CBE69950.1| putative Two-component transcriptional regulator; putative transcriptional regulator involved in heavy-metal (Cu/Zn) homeostasis [NC10 bacterium 'Dutch sediment'] Length = 225 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 62/213 (29%), Positives = 99/213 (46%), Gaps = 23/213 (10%) Query: 19 FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIG 77 ++GV ++ NS + E+L S DV ++ L GK ++L R +RA P++ Sbjct: 20 LAEEGVVVDIANSGDEGEYLASVNDYDVIVLDWLLPGKDG--IQLCRELRARGLSTPILM 77 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP----IRV 133 ++ +L+ + D+G DD + KP E+LAR+ A+ RR TGP +RV Sbjct: 78 VTAKDALRDRIKGLDTGADDYMVKPFAFAELLARIRALMRR--------GTGPRPTMLRV 129 Query: 134 FSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GLFDEAVEE 187 DP G L +E I+E+L G+ V +T + I+ FD Sbjct: 130 ADLVIDPASHRVTRGGASIKLTTKEYAIIEFLARRVGEVVTRTTLGEHIWEDEFDNLT-- 187 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+V+ HIS LRKK+ + + R GY + Sbjct: 188 NLVDVHISNLRKKIDAGSTVSLIHTVRGRGYRL 220 >gi|284921875|emb|CBG34950.1| two-component response regulator [Escherichia coli 042] Length = 239 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 58 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 117 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 118 FSFSELLARVRAQLRQHHALNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 177 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 178 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLISTIRGMGYS 233 >gi|119386003|ref|YP_917058.1| two component transcriptional regulator [Paracoccus denitrificans PD1222] gi|119376598|gb|ABL71362.1| two component transcriptional regulator, winged helix family [Paracoccus denitrificans PD1222] Length = 219 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 7/158 (4%) Query: 65 RIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +RA V P+I ++ + ++ ++G DD + KP E+ AR+ ++ RR + Sbjct: 64 RSLRAGGNVTPVIILTALDQISDRIEGLNAGADDYLVKPFDLAELSARIGSVARRYSGNP 123 Query: 124 NRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N G + V R G L RE + E + G+ ++K Q+ +Y FD Sbjct: 124 NPIIVHGALAVDLALRSIRRDGRPVQLTAREWALFEAFLTRPGQLLSKAQLEEKLYA-FD 182 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 VE N +E H+S+LRK KLG ++++R LGY + Sbjct: 183 TEVESNTIEVHVSRLRK----KLGAAVIETERGLGYRL 216 >gi|294636784|ref|ZP_06715122.1| DNA-binding response regulator PhoP [Edwardsiella tarda ATCC 23685] gi|291089999|gb|EFE22560.1| DNA-binding response regulator PhoP [Edwardsiella tarda ATCC 23685] Length = 224 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 3/167 (1%) Query: 57 GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 GE L L R R+ +P++ ++ S Q + ++G DD V KP H E+LAR+ A+ Sbjct: 56 GEDGLSLIRRWRSEQVTLPILVLTARESWQEKVTVLEAGADDYVTKPFHLEEVLARMQAL 115 Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR +++ P +V R+ V + L E I+E L+ N GK V+K + Sbjct: 116 MRRNSGLASQIISLPPFQVDLSRRELRVDDTLIKLTAFEYTIMETLIRNNGKVVSKDALM 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +Y E E + ++ + +LRKKL+ + + + R GY D Sbjct: 176 LQLYP-DAELRESHTIDVLMGRLRKKLQQAFPAEVITTVRGQGYRFD 221 >gi|266625369|ref|ZP_06118304.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM 13479] gi|288862730|gb|EFC95028.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM 13479] Length = 225 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 5/163 (3%) Query: 41 SAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 S DV ++ L GE ++ R +R AH Q P++ ++ + + D G DD + Sbjct: 42 SGEYDVIVLDVML--PGENGFDVVRKLRKAHVQTPVLMLTARDDISDKVTGLDRGADDYM 99 Query: 100 NKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 KP E+LARV A+ RR +V G + + D + L +E +L+ Sbjct: 100 TKPFVPEELLARVRALSRRQGEVVVEELHFGDLVLNLSTNDLLRGRKSIHLGYKEFEVLK 159 Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 LM N GK ++K + S ++G D E+N VE++IS LRKKL Sbjct: 160 LLMNNAGKIISKDTLISRVWG-NDSDAEDNNVEAYISFLRKKL 201 >gi|187933594|ref|YP_001887202.1| response regulator [Clostridium botulinum B str. Eklund 17B] gi|187721747|gb|ACD22968.1| response regulator [Clostridium botulinum B str. Eklund 17B] Length = 218 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 67/130 (51%), Gaps = 1/130 (0%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 +P+I ++ L + SG +D + KP E+LAR+ + RR ++N E G + Sbjct: 72 NIPVIFLTAKNGLADKVTGLKSGAEDYIVKPFETVELLARIEIVLRRYSKNSNCIEFGNL 131 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 +++ + R + E L +E ++ L+ N+ +++ + I+G ++ E ++ Sbjct: 132 KIYEEERSIKKDDETIDLTLKEFELMVLLVKNKNMALSREYLLEKIWG-YEYMGETRTID 190 Query: 192 SHISKLRKKL 201 +HI KLRKKL Sbjct: 191 NHIQKLRKKL 200 >gi|126649411|ref|ZP_01721652.1| two-component response regulator [Bacillus sp. B14905] gi|126593736|gb|EAZ87659.1| two-component response regulator [Bacillus sp. B14905] Length = 227 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 6/181 (3%) Query: 26 LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85 +E F + E RE + + ++ E + + IRA S VP+I ++ + Sbjct: 26 IETFTAASGTEAYDIIVREKIDLVLLDVMMPHEDGFVVCQSIRAMSNVPIIFLTARDAND 85 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGRDP 140 + G DD + KP H E++AR+ A+ RR ++ GPI++ R Sbjct: 86 DKVKGLTLGGDDYIVKPFTHDELVARIYAVLRRSGANIAELQQKYVVFGPIKIDEIARKV 145 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 V G+ PL +E +L M N G + Q+ I+ + D V++HI LR K Sbjct: 146 SVDGKSIPLTLKEFELLHLFMKNPGNAYTREQLLERIWDI-DYVGGTRTVDTHIKTLRIK 204 Query: 201 L 201 L Sbjct: 205 L 205 >gi|172058697|ref|YP_001815157.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991218|gb|ACB62140.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 222 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 82/166 (49%), Gaps = 3/166 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G EL ++R++ ++P++ ++ L D F +G DD + KP E++ R+ A+ Sbjct: 56 GRTGFELCALLRSNQEIPILMLTALGELTDKRDGFSAGADDYITKPFDPEELVFRLHAVA 115 Query: 117 RRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K + + G + + + + +PRRE +L L + G+ ++ ++ Sbjct: 116 RRYQKAAVPTMQFGEVTIDKRSQQLTIGTTRLTIPRREFELLHQLASFPGRVFSREELIE 175 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++GL D ++ V+ HI +LR +L +++ R LGY ++ Sbjct: 176 HVWGL-DFMGDDRTVDVHIKRLRTRLHQTEAI-TIETVRGLGYRLE 219 >gi|332561089|ref|ZP_08415407.1| two component transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|332274887|gb|EGJ20203.1| two component transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 220 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ DG G E +LE + R + ++ ++ G + Sbjct: 3 ILIVEDDPVLADGLQVGLRLAGFVPEAVGTLEDARAALDAGRFEAMVLD-LMLPDGSGLE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 L ++ A VP++ ++ L + D G DD + KP E+ AR+ A+ RR Sbjct: 62 LLAKLRAAREPVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGRRPAA 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ R E + + + G L RE +L LMA+ ++K QI +YG Sbjct: 122 LATTRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQLYG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E +E N +E H+ KLR KL + GF +++ R +GY + Sbjct: 181 WQEEIESNAIEVHVHKLRAKLGH--GF--IETVRGVGYRL 216 >gi|260768553|ref|ZP_05877487.1| DNA-binding response regulator [Vibrio furnissii CIP 102972] gi|260616583|gb|EEX41768.1| DNA-binding response regulator [Vibrio furnissii CIP 102972] gi|315180264|gb|ADT87178.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Vibrio furnissii NCTC 11218] Length = 223 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 90/202 (44%), Gaps = 12/202 (5%) Query: 28 GFNSLEF--------EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGI 78 G N L F +E L + I L+ G LE+ + +R H Q ++ + Sbjct: 19 GLNHLGFATDDTGDGQEALSMALNNTYDVIILDLMLPGLSGLEILKALRKHKKQTRVLIL 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSD 136 S Q ++ G DD + KP E+ AR+ I RR L+ + + Sbjct: 79 SAKTETQDRVEGLLQGADDYLTKPFSFEELHARILTIMRRGSLEQVDQTLTVDEYSLNLV 138 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 + + + L E +IL+ L A + ++ QI A+ G FD V +N +E+H+S Sbjct: 139 DKTFHFEQQTVDLTPNEFKILQCLFAAPNRVMSVEQISEAVVGHFD-YVAKNTIEAHLSA 197 Query: 197 LRKKLRNKLGFDPVDSKRFLGY 218 +RKK+R+ G PV +KR GY Sbjct: 198 IRKKVRDAGGTLPVKNKRGFGY 219 >gi|284035398|ref|YP_003385328.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283814691|gb|ADB36529.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 225 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 96/212 (45%), Gaps = 14/212 (6%) Query: 10 LVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 +VKDGY+ E ++ E EE + + V G G +++E + + Sbjct: 20 MVKDGYVC---------ETASTFREAEEKIHLYTYDCVIVDLTLPDGNGFQIIEALKRLI 70 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAE 127 A + V +I D +L+ L + G DD + KP H E+ ARV ++ RR + + Sbjct: 71 ATTGVIIISARD--ALEDKLRGLEIGSDDYLTKPFHLSELNARVKSLLRRRQFGGHTEIR 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVE 186 I V R+ V G + L R+E +L Y ++N + K I ++G D A Sbjct: 129 FREIVVVPHNRNVYVNGHLTTLSRKEYDLLLYFLSNVDVALTKASIAEHLWGDNIDSADS 188 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++V SHI LR+KL K D V S +GY Sbjct: 189 FDMVYSHIKNLRRKLLEKGAADYVQSIYGIGY 220 >gi|330809365|ref|YP_004353827.1| two-component regulator system, response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377473|gb|AEA68823.1| Putative two-component regulator system, response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 219 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 27/229 (11%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLI------ 54 +L++D + D DDG +++ W+Q + AR VS LI Sbjct: 4 LLVEDSPRLGDAVREQIADDGHAVD---------WVQNLAQARSSVSTTAYDLILLDLML 54 Query: 55 --GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 G+G L R A +I ++ + + ++G DD + KP E+ ARV Sbjct: 55 PDGRGLDFLRQRR--SAGDATAVIILTAQDQISDRIAGLNAGADDYLVKPFDLFELSARV 112 Query: 113 AAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 AA+ RR + N + G + V R + G L RE +LE + G ++K Sbjct: 113 AAVARRYSGNPNPQIRLGELHVDMTARTLQRAGMAVDLTAREWALLEAFIQRPGALLSKG 172 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Q+ +Y F +E N +E +IS+LRK KLG D +++ R +GY + Sbjct: 173 QLEDRLYA-FGAEIESNTIEVYISRLRK----KLGRDLIETVRGMGYRM 216 >gi|229147640|ref|ZP_04275984.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228635849|gb|EEK92335.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] Length = 220 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 7/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++D S + + +G DD + KP E++AR+ AI RR Sbjct: 57 EICRQIRLVKTTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARIQAILRRSD- 115 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + E + +F D V+ G+ L +RE +L +L+ N+ +++ + + Sbjct: 116 CNQQKEISFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 175 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ V NVV+ +I +RKKL+ + + + GYS+ Sbjct: 176 VWG-YNIVVNPNVVDLYIGYVRKKLKCEKKERYIQTIHGRGYSM 218 >gi|218283462|ref|ZP_03489462.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989] gi|218215844|gb|EEC89382.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989] Length = 228 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 102/206 (49%), Gaps = 12/206 (5%) Query: 24 VSLEGFNS--LEFE------EWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVP 74 ++L FN ++FE ++LQ + + D++ ++ L G G +L+ R + +P Sbjct: 19 LTLASFNYELVDFENGKDAYDYLQDN-KVDLAILDLMLPGMNGYDILKFIRSKASLKDLP 77 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134 +I +S + D G DD + KP E+ AR+ ++ RR K + + + Sbjct: 78 VIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLRRSKKDERLIQIHGLCID 137 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D R ++ E L +E +L+YL N G+ V++ ++ + I+G +D E ++ HI Sbjct: 138 LDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELINQIWG-YDFIGESRTLDVHI 196 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSI 220 + LRKKL N+ + S R +GY + Sbjct: 197 NSLRKKLGNEYAH-WIQSVRQVGYRL 221 >gi|149190294|ref|ZP_01868568.1| transcriptional activator protein IrlR [Vibrio shilonii AK1] gi|148835901|gb|EDL52864.1| transcriptional activator protein IrlR [Vibrio shilonii AK1] Length = 227 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 100/222 (45%), Gaps = 24/222 (10%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66 + L++ GY DGV +L ++ D+ ++ L G ++L+ R Sbjct: 18 KGLIESGYTVDLSTDGVD---------ALYLATTNDYDLIVLDIMLPKLNGWQLLQTLR- 67 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 + P+I +S ++ + + G +D + KP E+LARV R S Sbjct: 68 -SSDIPTPVIILSAKDQVEDRVKGLELGANDYLVKPFAFIELLARVKNALRHQTTS---I 123 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +T + +D R + PL +E +LEYL A RG+ V +TQI SA++ + Sbjct: 124 KTESVLCIADLSLDLLKRKATRNNDTIPLTAKEFSLLEYLFAKRGQVVTRTQIASAVWDM 183 Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + NV+++ + +LR K+ + + R +GY +D Sbjct: 184 NFDS--DTNVIDAAVKRLRSKIDKPYQIKLIQTVRGMGYKLD 223 >gi|300813866|ref|ZP_07094171.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512053|gb|EFK39248.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 223 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 94/168 (55%), Gaps = 8/168 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G ++LE R +++ I +S ++ ++ D G +D ++KP H E+ AR+ ++ Sbjct: 59 GMEILEEFRTFNQDTKI--IILSARSQIKDKVEGLDKGANDYLSKPFHLDELEARIRSLT 116 Query: 117 RRLKVSNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR ++NN+ + F S R ++ + L R+E ILEYL+ NRG+ +++ ++ Sbjct: 117 RRNFITNNQMLSYKNLSFDSKKRIVKIDDKEISLTRKELGILEYLLLNRGRPISQEELID 176 Query: 176 AIYGLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ D +V+ N + HIS LRKKL+ L +DP+ ++ LGY ++ Sbjct: 177 HVW---DSSVDLFSNSIRVHISALRKKLKKALKYDPIINRVGLGYQLE 221 >gi|268609051|ref|ZP_06142778.1| response regulator receiver protein [Ruminococcus flavefaciens FD-1] Length = 225 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 4/168 (2%) Query: 57 GEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G +E+ R +R H P++ ++ ++ ++ D G DD + KP E+LARV A+ Sbjct: 56 GMNGIEVLRNLRQEHINTPVLLLTARSEVEDKINGLDCGADDYLTKPFITGELLARVRAL 115 Query: 116 YRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR V + + + + D +G L +E +I+E L++N + + K +I Sbjct: 116 TRRKGEIVDESNLDFNGLTLNKDTCSVIWKGSDVKLSLKEYQIMELLISNPRRILPKERI 175 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G ++ VE N +E +IS LRKKL + + + R +GYS++ Sbjct: 176 IEKIWG-YESDVEYNNIEVYISFLRKKLASISAPVQIKTARGIGYSLE 222 >gi|228997630|ref|ZP_04157239.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides Rock3-17] gi|228762092|gb|EEM11029.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides Rock3-17] Length = 224 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 89/191 (46%), Gaps = 13/191 (6%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L+++ ++ I L+ G +E+ R +RA P+I ++ S+ + DSG DD Sbjct: 38 LEAAIEKNYDIILLDLMLPGLNGMEVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETGP--------IRVFSDGRDPEVQGEVFPL 149 + KP E+LAR+ I+RR + E+ P +++ + R E+ L Sbjct: 98 YLPKPFAIEELLARIRVIFRR----EQKEESKPTLLLAFKDLQLHVESRTLRKNDEIIEL 153 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L M N + + + + ++G +D VE N+V+ ++ LR KL + Sbjct: 154 TNKEFELLLMFMKNINRVLTRDILLEQVWG-YDAIVETNIVDVYVRYLRNKLHGVDKEEY 212 Query: 210 VDSKRFLGYSI 220 + + R GY + Sbjct: 213 IQTVRGAGYVM 223 >gi|254412739|ref|ZP_05026512.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180474|gb|EDX75465.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 235 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 27/226 (11%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 RAL + Y+ + DG G+ L++ + AI +L+ + LEL R + Sbjct: 18 RALSLEKYVVDWVVDGTEAWGY--------LENQEMQYTLAIFDWLLPELSG-LELLRRL 68 Query: 68 RAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118 RA+ S +P++ ++ L+ + D+G DD + KP E+LARV A+ RR Sbjct: 69 RANKSSLPVLMLTAKDRLEDRVAGLDAGADDYLVKPFRMAELLARVRALQRRSPQLQPQQ 128 Query: 119 LKVSNNRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 L+V + + G RV + G EV PL +E ++LEY M + + V QI + Sbjct: 129 LQVGSLTLDCGTRTVYRVAAKGEKQEV-----PLTNKEYQLLEYFMRHPNQVVTSDQIRN 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + E + NVV + I LR+KL + P+++ +GY ++ Sbjct: 184 QLWEVSAEPL-SNVVAAQIRLLRRKLESIGCAIPIETVHGIGYRLN 228 >gi|149370489|ref|ZP_01890178.1| two-component system response regulator [unidentified eubacterium SCB49] gi|149356040|gb|EDM44597.1| two-component system response regulator [unidentified eubacterium SCB49] Length = 188 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 82/163 (50%), Gaps = 6/163 (3%) Query: 61 LELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 LE+ + IR +P+I ++ + + + DSG DD + KP +E+LAR+ A R Sbjct: 22 LEVAKKIRQLGFDSLPIIMLTALGTTENIVKGLDSGADDYLIKPFKFKELLARIRARTRT 81 Query: 119 LKVSNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + ++ N + I + D ++ G+ L E R+LEYLM N + +++ I Sbjct: 82 VGITGNSNQLLQIEDLTLDMDAKIVTRGGQEIKLTSTEFRLLEYLMKNSNRVLSRVDILE 141 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +++ + + + NVV+ +++ LR K+ K + + +GY Sbjct: 142 SVWDI-NFNMGTNVVDVYVNYLRNKIDKKFEIKLIHTVIGMGY 183 >gi|149277690|ref|ZP_01883830.1| two-component system response regulator [Pedobacter sp. BAL39] gi|149231378|gb|EDM36757.1| two-component system response regulator [Pedobacter sp. BAL39] Length = 225 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 4/151 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G VL + R V +I D SL+ + + G DD + KP H E+ AR+ + Sbjct: 57 GNGLDVLAELKAARKSDNVIIISAKD--SLEDKITGLNMGADDYLVKPFHIAELNARINS 114 Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR + N+ E + + R V G+ L R+E IL YL N + V KT + Sbjct: 115 VLRRKSLDGNQTLELADMYINLSDRVVTVDGKELLLNRKEYDILVYLAVNSSRLVNKTAL 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRN 203 ++G D+A + + S I LRKKL++ Sbjct: 175 AEQVWGDYMDQADDYEFMYSQIRNLRKKLKD 205 >gi|313900629|ref|ZP_07834122.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312954691|gb|EFR36366.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 230 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 4/167 (2%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 +E + I ++ KGE +L R IR+ S VP++ +++ S + + F G DD + KP Sbjct: 43 QETIDCIVLDVLLKGESGFDLCRKIRSFSSVPIVFLTNLSSQEDLKNGFLMGADDYITKP 102 Query: 103 IHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159 E+ R+ A R+ +R + P+R+ D R ++Q PL E IL Sbjct: 103 FSLEELYLRIQARIRQYYQIPSRQKILNFFPLRINLDARTIQIQDNRVPLTMSEFDILVL 162 Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L ++I+ ++ + D + V+ HI+ LRKKL G Sbjct: 163 LAQTPEHVYTISEIYQRVWKMPDMN-STHTVQVHIANLRKKLEEAWG 208 >gi|290770079|gb|ADD61842.1| putative protein [uncultured organism] Length = 223 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 1/142 (0%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R IR S+VP+I ++ + + + D G DD + KP + +E+L+R++A RR K Sbjct: 59 FDICRKIRKLSEVPVIFLTSCDNEEEIVTGLDIGADDYITKPFYTKELLSRISANLRRSK 118 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N + G I V D GE + E I+ L+ N+G+ V + I+ I+ Sbjct: 119 FNAGNIYKKGDIVVDFDRYKISRCGEELNISTNEFDIVRILIENKGRVVRREVIYEKIWD 178 Query: 180 LFDEAVEENVVESHISKLRKKL 201 + VE N + +S+++ KL Sbjct: 179 IHGNFVEYNTLTVAMSRIKAKL 200 >gi|282882486|ref|ZP_06291107.1| transcriptional regulatory protein CutR [Peptoniphilus lacrimalis 315-B] gi|281297628|gb|EFA90103.1| transcriptional regulatory protein CutR [Peptoniphilus lacrimalis 315-B] Length = 223 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 94/168 (55%), Gaps = 8/168 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G ++LE R +++ I +S ++ ++ D G +D ++KP H E+ AR+ ++ Sbjct: 59 GMEILEEFRTFNQDTKI--IILSARSQIKDKVEGLDKGANDYLSKPFHLDELEARIRSLT 116 Query: 117 RRLKVSNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR ++NN+ + F S R ++ + L R+E ILEYL+ NRG+ +++ ++ Sbjct: 117 RRNFITNNQMLSYKNLSFDSKKRIVKIDDKEISLTRKELGILEYLLLNRGRPISQEELID 176 Query: 176 AIYGLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ D +V+ N + HIS LRKKL+ L +DP+ ++ LGY ++ Sbjct: 177 HVW---DSSVDLFSNSIRVHISALRKKLKKALKYDPIINRVGLGYQLE 221 >gi|169342185|ref|ZP_02863271.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169299669|gb|EDS81726.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 226 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 7/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR SQVP+I ++ S L + G DD V KP + + +LAR+A+I +R S Sbjct: 65 ICREIRKKSQVPIIVVTSRQSEMDELMSMNLGADDFVTKPYNTQILLARIASIMKR-TYS 123 Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ET ++ + + EV L + E +IL L+ N+GK V++ I + Sbjct: 124 GIEGETEIFNCRGLKYNMSTSEVSFKDEVEELTKNESKILNILIRNKGKIVSRDNIIKTL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +E +++N + ++++LR+K+ + +KR GY Sbjct: 184 WQ-SNEFIDDNTLTVNVNRLRRKIEGIGAEGYLQTKRGQGY 223 >gi|126651421|ref|ZP_01723625.1| two-component response regulator [Bacillus sp. B14905] gi|126591674|gb|EAZ85770.1| two-component response regulator [Bacillus sp. B14905] Length = 233 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 3/145 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR VP+I ++ + + G DD + KP E+LAR+ A+ RR K+ + Sbjct: 66 IRKFWHVPIIMLTAKGEHSDIVKGLNIGADDYILKPFDEEELLARIHAVLRRTKIEDKVV 125 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 +R+ + + Q E PL +E ++ + + K ++ + + ++G + ++E Sbjct: 126 VFEGLRLDKESFELYYQQEAIPLTPKEFSMMSLFLDYQNKVFSREHLINTVWG-YHVSIE 184 Query: 187 ENVVESHISKLRKKLRNKLGFDPVD 211 + ++SH+ LR+KLR K GF P D Sbjct: 185 DRTIDSHVRNLREKLR-KSGF-PAD 207 >gi|75909659|ref|YP_323955.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703384|gb|ABA23060.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 224 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 14/152 (9%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIR 132 P+I ++ L L + G DD + KP E++AR+ A+ RR + N G ++ Sbjct: 74 PVILLTARNELDDRLAGLNLGADDYIAKPFFVEELVARIHAVVRRSIGDRQNLLVIGTLK 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + R+ V L RE +LEYLM + G+ +TQI ++G +D NVV+ Sbjct: 134 LDRITREVTCNQRVIELTSREFNLLEYLMRSPGRVFTRTQILEHVWG-YDFNPNTNVVDV 192 Query: 193 HISKLRKKLRNKLGFDPVD------SKRFLGY 218 I ++RKK+ DPVD S R +GY Sbjct: 193 CIQRIRKKI------DPVDEAGWIESIRGVGY 218 >gi|18309822|ref|NP_561756.1| two-component response regulator [Clostridium perfringens str. 13] gi|110798875|ref|YP_695287.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168212523|ref|ZP_02638148.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|168216286|ref|ZP_02641911.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|169342523|ref|ZP_02863579.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|182625600|ref|ZP_02953370.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|18144500|dbj|BAB80546.1| two-component response regulator [Clostridium perfringens str. 13] gi|110673522|gb|ABG82509.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|169299295|gb|EDS81362.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|170715980|gb|EDT28162.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|177909152|gb|EDT71623.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|182381663|gb|EDT79142.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 222 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 83/158 (52%), Gaps = 3/158 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121 + R IR S VP+I ++ S + + G DD + KP + + +LAR+A++ RR + Sbjct: 63 ICREIRKDSNVPIIIVTSRDSDMDEIMSMNLGADDFITKPYNTQVLLARIASLLRRTYSL 122 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S T G +++ +G+ L + E +IL +L+ N+G V++ + ++ Sbjct: 123 SEQEVLTYGDLKLNLSNGTISCRGKEEELTKNELKILSHLLKNKGNVVSREDLMDYMWN- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D V++N + ++++LRKKL ++++R LGY Sbjct: 182 SDIFVDDNTLSVNVTRLRKKLEEVGVKGAIETRRGLGY 219 >gi|228475708|ref|ZP_04060426.1| two-component response regulator [Staphylococcus hominis SK119] gi|228270490|gb|EEK11925.1| two-component response regulator [Staphylococcus hominis SK119] Length = 221 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 16/220 (7%) Query: 16 IALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRI----- 66 + + DD V E N L + S A++ + +E F + E VL LP Sbjct: 3 VLIVEDDVVIAESLGNELSHWNYEVSIAKQFGNILEEFKTAEPELVLLDINLPTFNGYHW 62 Query: 67 ---IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LK 120 IR S VP+I IS + G DD + KP + +A++ A+ RR L Sbjct: 63 CQEIRKVSNVPIIFISSRTDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLT 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 VSNN ++ D + L E +IL L N GK V +T I + Sbjct: 123 VSNNEITVKGCKLVVDEATLYYNNDSVQLSFTELQILNKLFQNEGKYVNRTAIIEKCWE- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +++N + ++++LRKKL++ D +++K+ +GY + Sbjct: 182 SENFIDDNTLAVNMTRLRKKLQSIGIVDFIETKKNVGYKV 221 >gi|209520678|ref|ZP_03269429.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209498878|gb|EDZ98982.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 220 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 LEVLRALRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQ 119 Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S++ G + + + G L RE +LE L+A G ++K+Q+ +Y Sbjct: 120 SGRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + E + N VE +I LRK KLG D + + R LGY I Sbjct: 180 G-WGEEIGSNTVEVYIHALRK----KLGADLIRNVRGLGYMI 216 >gi|193212865|ref|YP_001998818.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] gi|193086342|gb|ACF11618.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] Length = 227 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 81/157 (51%), Gaps = 3/157 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ + + VP+I ++ +++ + D+G +D + KP E+LAR+ RR ++ Sbjct: 65 RLRKEGNDVPIIFLTAKDTIEDVVFGLDAGANDYIRKPFEFEELLARIRVQLRRRGSESS 124 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDE 183 + TG + V + L +E +LE+L+ N+G+ +++I ++ + FD Sbjct: 125 KLSTGELTVDPASHQARCESIDLALTPKEFALLEFLLRNKGRVCTRSRIIEHVWDMHFDS 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +V++ +I+ LRKKL D + + R +GY I Sbjct: 185 --DTSVIDVYINFLRKKLDAAGCRDLIQTIRGVGYII 219 >gi|222056601|ref|YP_002538963.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221565890|gb|ACM21862.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 222 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 82/174 (47%), Gaps = 10/174 (5%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 W+Q+ E + ++ L GKG LE+ + IR+ S VP+I I+ L + G D Sbjct: 41 WIQAQKPEMI-LLDLMLPGKGG--LEICKEIRSFSSVPIIMITARVEEIDRLLGLELGAD 97 Query: 97 DVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERR 155 D + KP RE++ARV A+ RR A G V D R + L E + Sbjct: 98 DYICKPFSPREVVARVKAVLRR--AHGAEAVNGKELVLDDSRYRAMLHDRDLHLTAVEFK 155 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +L L A+ G+ + Q+ IY V + ++SHI KLR+KL G DP Sbjct: 156 LLSLLAASPGRIFGRQQLMDHIYP-DQRIVSDRTIDSHIKKLRRKLS---GADP 205 >gi|148550428|ref|YP_001270530.1| two component transcriptional regulator [Pseudomonas putida F1] gi|167036353|ref|YP_001671584.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|325275137|ref|ZP_08141111.1| winged helix family two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|148514486|gb|ABQ81346.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|166862841|gb|ABZ01249.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] gi|313501293|gb|ADR62659.1| PhoB [Pseudomonas putida BIRD-1] gi|324099745|gb|EGB97617.1| winged helix family two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 229 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 103/213 (48%), Gaps = 24/213 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 +++DD A +++ IA+ + + G++ LE E Q+ A + D+ ++ L Sbjct: 6 ILIVDDEAPIRE-MIAV----ALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--P 58 Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ +P+I ++ + + G DD + KP RE++AR+ Sbjct: 59 GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR S++ A PI V DP + G+ + E R+L++ M ++ + Sbjct: 119 AVLRRTGPSDSEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ ++G + VEE V+ HI +LRK L Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207 >gi|257469232|ref|ZP_05633326.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|317063479|ref|ZP_07927964.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|313689155|gb|EFS25990.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 220 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 106/217 (48%), Gaps = 25/217 (11%) Query: 10 LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRII 67 L+K+GY +DG V+++ F F D+ ++ L K G VL R I Sbjct: 21 LLKEGYDVTEAEDGEVAIKLFYEKPF----------DLVILDIMLPKKDGWSVL---REI 67 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-- 125 + +S VP++ +S + L F+ G D+ + KP +++ +LAR+ A+ + SNN Sbjct: 68 KKYSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKALIKN--TSNNTDH 125 Query: 126 -AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E G I + V GE L +E +L YL+ N +++ ++ + ++G +D Sbjct: 126 IIELGKIIINDTSHTVTVDGEEVILAPKEYELLIYLIKNHKIALSRDKMLTEVWG-YDFP 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +++HI LRK KLG + + + R +GY + Sbjct: 185 GSDRTIDTHIKNLRK----KLGEECIKTVRGIGYKFE 217 >gi|326204220|ref|ZP_08194080.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325985731|gb|EGD46567.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 238 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 7/141 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR H+ VP++ ++ L G DD + KP + E+ AR+ +RRL+ N Sbjct: 70 IRRHTAVPILFLTARSGDLDKLTGLGIGGDDYITKPFNPLEVAARINVQFRRLEQYQNAG 129 Query: 127 ET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +T GP+ + V G+ P P +E +L +L + + Q++ I+G Sbjct: 130 QTTEINRFGPVAIDRKAAQLLVDGQEVPCPAKEFELLLFLTDHPNQVFTSGQLYEHIWG- 188 Query: 181 FDEAVEENVVESHISKLRKKL 201 +D +E V HI +LRKK+ Sbjct: 189 YDSIGDEKTVSIHIMRLRKKI 209 >gi|255527179|ref|ZP_05394064.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186122|ref|ZP_06854527.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255509134|gb|EET85489.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049390|gb|EFG88819.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 231 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 25/176 (14%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + IR ++P+I +S + + + G DD + KP E+LARV A RR Sbjct: 63 LIKKIREKYKIPVIVMSAKSEISDKILGLELGADDYITKPCDPLEVLARVKAQLRRCLEF 122 Query: 123 NNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +N E G +++++D P+ E ++L LM N K K QIF Sbjct: 123 DNSEEEIVETITIGELKLYTDSCTLYKGSRQVPITSTEYKLLLLLMGNPKKVFTKKQIFE 182 Query: 176 AI-----YGLFDEAVEENVVESHISKLRKKL----RNKLGFDPVDSKRFLGYSIDW 222 I YG ++N + HISKLR K+ +N L + R LGY ++ Sbjct: 183 CIWNEPFYG------DDNTIMVHISKLRDKIEEDSKNPLYLKTI---RGLGYKFEY 229 >gi|251778916|ref|ZP_04821836.1| putative lantibiotic biosynthesis regulatory protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083231|gb|EES49121.1| putative lantibiotic biosynthesis regulatory protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 220 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 3/126 (2%) Query: 94 GVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152 G DD + KP E+ ARV A RR + N ++ + + ++ E+ P + Sbjct: 93 GGDDYITKPFGISELRARVNAHLRRECREKQNAFYISELKFYINAKEVYHDDELVPFTKS 152 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E I EYL N G+ +K QI+ +++G FD + + HI +R KL+ K+G + +++ Sbjct: 153 EYNICEYLALNHGQVFSKEQIYESVFG-FDGRSDTTAIVEHIKNIRSKLK-KIGINTIET 210 Query: 213 KRFLGY 218 +GY Sbjct: 211 VWGIGY 216 >gi|217966593|ref|YP_002352099.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] gi|217335692|gb|ACK41485.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] Length = 220 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 6/155 (3%) Query: 68 RAHSQVPLIGISDYPSL---QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R + P +GI +L + ++ F G DD V KP E+LAR+ A+ RR + Sbjct: 65 RLRDKYPDLGIIMLTALGDVKDKVEAFKLGADDYVVKPFSIEELLARIQAVSRRKEKKEE 124 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 I ++ D + G+ L + E +L L+ N ++K +I S+I+G +D+ Sbjct: 125 IISKHGIELYVDQHRVFIDGKEVELSKTEFSLLYLLLKNENIVLSKEKILSSIWGDYDDE 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 EN+VE +I+ LRKKL + + + + R +GYS Sbjct: 185 -RENLVEVYINYLRKKLGERGKY--IKTIRGVGYS 216 >gi|311114543|ref|YP_003985764.1| response regulator [Gardnerella vaginalis ATCC 14019] gi|310946037|gb|ADP38741.1| response regulator [Gardnerella vaginalis ATCC 14019] Length = 250 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 20/172 (11%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI + VP++ ++ Q + G DD V KP E++AR+ AI RR + + Sbjct: 75 RIRQNGVAVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TQD 131 Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E P+ + D D G L E ++L YLM N G+ ++K+QI + ++ Sbjct: 132 PDEDTPVVRVADLEINEDSHDVSRSGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVW 191 Query: 179 GLFDEAVEENVVESHISKLRKK-----LRNKLG-----FDPVDSKRFLGYSI 220 +D + +VES+IS LRKK ++N+ G +++KR +GY I Sbjct: 192 Q-YDWGGDAAIVESYISYLRKKIDGIEIKNEDGSLKKVVPLIETKRGIGYMI 242 >gi|331269514|ref|YP_004396006.1| regulatory protein VanR [Clostridium botulinum BKT015925] gi|329126064|gb|AEB76009.1| regulatory protein VanR [Clostridium botulinum BKT015925] Length = 226 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 10/207 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLE---FEEWLQSSAREDVSAIEAFLIGKG 57 + ++ DD+ L K AL +EG+ L+ +EE ++ ++ V + + Sbjct: 4 ILIVEDDKLLNKGVKFAL------EIEGYTILDTYNYEEGYKAFLKDKVDLVLLDINLPD 57 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E +L IR +S++P+I I+ + +D F+ G DD ++KP + R+ A+ R Sbjct: 58 ESGSKLSMEIRKNSEIPIIFITAKDTESDIIDGFNLGCDDYISKPFSIEVLKQRIKAVLR 117 Query: 118 RLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R V N I + + D + G L +E R+LE L+ N G+ + + I Sbjct: 118 RTNLVENTVFVYEDITIDFNKMDVKKDGISIKLTAKEYRLLELLVKNSGQVLTRRTILEK 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203 ++ V+EN + +I +LRKK+ + Sbjct: 178 LWDTDGNFVDENALNVNIRRLRKKIED 204 >gi|283455696|ref|YP_003360260.1| two-component response regulator [Bifidobacterium dentium Bd1] gi|306823278|ref|ZP_07456654.1| response regulator [Bifidobacterium dentium ATCC 27679] gi|309801893|ref|ZP_07696008.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bifidobacterium dentium JCVIHMP022] gi|283102330|gb|ADB09436.1| Two-component response regulator [Bifidobacterium dentium Bd1] gi|304553910|gb|EFM41821.1| response regulator [Bifidobacterium dentium ATCC 27679] gi|308221449|gb|EFO77746.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bifidobacterium dentium JCVIHMP022] Length = 248 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 20/172 (11%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI + P++ ++ Q + G DD V KP E++AR+ AI RR + Sbjct: 76 RIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TQE 132 Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E PI + D D G+ L E ++L YLM N G+ ++K QI ++ Sbjct: 133 QVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 192 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP----------VDSKRFLGYSI 220 +D + +VES+IS LRKK+ + D +++KR +GY I Sbjct: 193 Q-YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMI 243 >gi|251778175|ref|ZP_04821095.1| DNA-binding response regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082490|gb|EES48380.1| DNA-binding response regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 227 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 7/163 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RL 119 L I + +I ++ L L F+ G +D + KP E+ AR+ AI + ++ Sbjct: 63 LSYISKKTLNTGVIILTAKEELGDKLKAFNLGANDYLTKPFFMEELKARIIAILKGMGKI 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K SN E +++ + + E L + ++LEYL+ N+G + K QIF I G Sbjct: 123 KKSN-ILEFKNMQIDMKVKKVYINNEELELNEKLYKLLEYLVINKGVLLFKEQIFDNICG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 +A E ++E +IS+LRK+L +K +D + +KR +GY +D Sbjct: 182 YNSDAATE-IIEVYISRLRKQL-SKYNYDKYLVTKRGMGYLLD 222 >gi|228907029|ref|ZP_04070894.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228852620|gb|EEM97409.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 218 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 58 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199 >gi|323705669|ref|ZP_08117242.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534887|gb|EGB24665.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 225 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 9/159 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L + +R+ S +P+I ++ + + G DD + KP + RE++AR+ A++RR Sbjct: 61 LTLCKEVRSFSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRRTT 120 Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + G I + + + G+ L +E +L L +N GK +K ++ Sbjct: 121 TPYVKKHDVIKLGDITINVPDKIVQKNGKDIDLTNKEFELLVLLASNPGKLYSKDKLMDL 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 I+G FD + N V HI KLR+K+ + DP + K Sbjct: 181 IWG-FDFYGDTNTVNVHIRKLREKIED----DPANPKHI 214 >gi|254038194|ref|ZP_04872252.1| transcriptional regulatory protein QseB [Escherichia sp. 1_1_43] gi|226839818|gb|EEH71839.1| transcriptional regulatory protein QseB [Escherichia sp. 1_1_43] Length = 219 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 L---RKWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + R + GE L +E +LE LM N G+ + + I +Y Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|182413658|ref|YP_001818724.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177840872|gb|ACB75124.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 216 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 111/228 (48%), Gaps = 23/228 (10%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNS-----LEFEEWLQSSAREDVSAIEAFLIG 55 + V+ DD L+ + AL G++G +++G ++ + E W + DV E Sbjct: 3 LLVVEDDPDLLANLLKAL-GEEGYAVDGADTGPEGLFKAESWDYDAIVLDVMLPEL---- 57 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G +L+ +R + P++ ++ + Q + D G DD + KP E+ AR+ A+ Sbjct: 58 DGWTLLQR---LRRTKRTPVLMLTARDATQDRVRGLDIGADDYLTKPFDLPELCARLRAL 114 Query: 116 YRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + R G + + R +G PL E ++E+L +RG+ V++T ++ Sbjct: 115 IRRSCGEVHPRLALGDLVIDQTARTVTCKGATVPLTATEYALIEFLALHRGQVVSRTTLY 174 Query: 175 SAIYGLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 LFDEA + N+++ H++ +R+ K+G D + ++R GY I Sbjct: 175 EH---LFDEAHDSLSNLLDVHVAHVRR----KIGRDVIVTRRGHGYLI 215 >gi|126652889|ref|ZP_01725032.1| DNA-binding response regulator [Bacillus sp. B14905] gi|126590309|gb|EAZ84430.1| DNA-binding response regulator [Bacillus sp. B14905] Length = 233 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 107/227 (47%), Gaps = 12/227 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 + VL D+RA+ + I L + S+ N++E + + D ++ L G G Sbjct: 6 ILVLEDERAIAEMIDIILRKEGMTSITVCNTIEAAKSEIYAKTFDFYLLDIMLPDGSG-- 63 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAI 115 LE+ IIR S P+ ++ S L F +G DD + KP + E++ARV A Sbjct: 64 -LEVAHIIREKSDAPIFYLTAKSSDADKLRGFMNGADDYITKPFNPLELVARVKVQLARY 122 Query: 116 YRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ +V+ N T F D + V G + R +L+YL N G+ ++K QI+ Sbjct: 123 MKKKQVTENHLFTCSRFTFDIDAAEITVDGVREIISGRLFHLLKYLCDNAGQVLSKEQIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 ++G D ++N V HI KLR+K+ G + + R +GY + Sbjct: 183 ERVWG--DCLFDDNTVMVHIRKLREKIEKNPGKPTCIITVRGIGYKL 227 >gi|300855471|ref|YP_003780455.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300435586|gb|ADK15353.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 220 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 77/163 (47%), Gaps = 10/163 (6%) Query: 61 LELPRIIRAHSQVPLIGIS---DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 EL + IR+ P+I ++ D S+ L F G DD ++KP E+ ARV A R Sbjct: 60 FELCQKIRSTVDSPIIFLTAKTDESSIVKGLAF---GGDDYISKPFGVMELNARVEAYLR 116 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R S + G I + D ++ V V + E I E+L NRGK K IF Sbjct: 117 RENRGKSTKKLVYGDITIDFDKKEILVNNNVIAFTKNEYNICEFLALNRGKVFTKQAIFE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 AIY L D + +V+ +I +R K + F P+++ +GY Sbjct: 177 AIYDL-DSDTQFSVITEYIRLIRNKFKEYNCF-PIETVWGVGY 217 >gi|291286979|ref|YP_003503795.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290884139|gb|ADD67839.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 227 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 19/174 (10%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +LE R A P++ ++ + + D G DD + KP E+LARV A+ Sbjct: 59 GFCILEAVR--EASITTPVLMLTAKSDVSDRIKGLDKGSDDYLVKPFAVSELLARVRALL 116 Query: 117 RR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 RR LKV++ T V DG P L R+E + EYL+ N+ + V Sbjct: 117 RRDNLDKNPFLKVADIVLNTVSCDVVKDGH-P------LKLTRKEYMVFEYLLYNKNRVV 169 Query: 169 AKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 K + ++G FDE N ++ HI LRKK+ ++ + +KR +GY I+ Sbjct: 170 TKAALAGHVWGDEFDEFNASNFIDVHIKNLRKKIGDENHL-IIRTKRGIGYIIN 222 >gi|289167698|ref|YP_003445967.1| response regulator [Streptococcus mitis B6] gi|288907265|emb|CBJ22100.1| response regulator [Streptococcus mitis B6] Length = 224 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K + N G I V +V+ L Sbjct: 91 FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGNIVVNLSTNTVKVEDTPVEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + KTQIF ++G FD +VVE ++SK+RKKL+ + Sbjct: 151 LGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTTFAEN 209 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 210 LKTLRSVGY 218 >gi|187777082|ref|ZP_02993555.1| hypothetical protein CLOSPO_00627 [Clostridium sporogenes ATCC 15579] gi|187774010|gb|EDU37812.1| hypothetical protein CLOSPO_00627 [Clostridium sporogenes ATCC 15579] Length = 230 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 9/164 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S++P+I IS S + ++G DD + KP + I+A++ + RR Sbjct: 66 RKIRQKSKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYA 125 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K+ E ++ + + + E + E + ++E +LEYLM K V + + I+ Sbjct: 126 PKIDEKIVELQGLKFYKERSEIEFEDESVIITKKEGILLEYLMKKYPKVVNRDFLLEKIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 E VEEN + ++S++RK+L +KLG D +++ R +GY ++ Sbjct: 186 DDI-EFVEENTLNVNVSRIRKRL-HKLGIEDGIETVRGVGYRLN 227 >gi|123440802|ref|YP_001004793.1| DNA-binding transcriptional regulator BasR [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087763|emb|CAL10549.1| two-component system response regulator [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 219 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 80/155 (51%), Gaps = 6/155 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 R H +P++ ++ +L+ +D D+G DD + KP E+LARV A+ RR + S+N Sbjct: 68 RQHITLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQGQSDNLI 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + + + + +QG+ + +E IL L+ G+ V + + +Y D+ + Sbjct: 128 QQDDLSLNLSTQQVCLQGQALEVTPKEFAILSRLIMRAGQTVNRELLQQDLYTWNDD-LG 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 N +E HI LR+ KLG D + + R +GY ++ Sbjct: 187 SNTLEVHIHNLRR----KLGKDRIRTVRGIGYRLE 217 >gi|325124170|gb|ADY83693.1| DNA-binding response regulator CreB [Acinetobacter calcoaceticus PHEA-2] Length = 240 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 87/174 (50%), Gaps = 15/174 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R SQ PL+ ++ + + G DD KP REI+AR+ AI+RR++ Sbjct: 64 FEVCKQLRQKSQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRME 123 Query: 121 VS----------NNRAETGPIRVFS-DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKR 167 V + A P ++S + + ++Q G+ L R E R+L L+ + + Sbjct: 124 VQIQSNSSQNPISQAAIVAPSSIWSCNPQSLQIQYHGKSLQLTRYEYRLLFLLIQHPEQV 183 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ Q+ I+ + ++ E V++HI LR+KL+ DP+ + R GYS+ Sbjct: 184 FSRQQLMDHIWEHPEHSL-ERTVDTHIKSLRQKLKQITPDNDPIRTHRGFGYSL 236 >gi|210621261|ref|ZP_03292567.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275] gi|210154872|gb|EEA85878.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275] Length = 222 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 7/163 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + ++IR S VP+I ++ L F+ DD + KP ++ RV AI RR Sbjct: 64 VCKMIRKTSSVPIIFLTALNQESDQLKGFEIECDDYITKPFSFNLLVKRVEAILRRSNKT 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +S+N +++ D E+ G+V L +E IL+ L+ + + + + +I+G Sbjct: 124 ISDNFITFEKLKLNLDTYSAEIDGDVIELTLKEFNILKELIEKYPQVITRESLLDSIWG- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + +V++HI +RKK+ + + + +GY++D N Sbjct: 183 YDYYGDTRIVDAHIKNIRKKIT----LPYIKTVKGIGYTLDKN 221 >gi|26991996|ref|NP_747421.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24987128|gb|AAN70885.1|AE016732_10 DNA-binding response regulator PhoB [Pseudomonas putida KT2440] Length = 242 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 103/213 (48%), Gaps = 24/213 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 +++DD A +++ IA+ + + G++ LE E Q+ A + D+ ++ L Sbjct: 19 ILIVDDEAPIRE-MIAV----ALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--P 71 Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ +P+I ++ + + G DD + KP RE++AR+ Sbjct: 72 GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 131 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR S++ A PI V DP + G+ + E R+L++ M ++ + Sbjct: 132 AVLRRTGPSDSEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 188 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ ++G + VEE V+ HI +LRK L Sbjct: 189 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 220 >gi|296157271|ref|ZP_06840107.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295892607|gb|EFG72389.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 220 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 15/166 (9%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 LDVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 118 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + R+++ IR+ + DP + G L RE +LE L+A G ++K+Q+ Sbjct: 119 --QSGRSDS-TIRLGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLE 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY I Sbjct: 176 EKMYG-WGEEIGSNTVEVYIHALRK----KLGADLIRNVRGLGYMI 216 >gi|227517846|ref|ZP_03947895.1| response regulator [Enterococcus faecalis TX0104] gi|229546771|ref|ZP_04435496.1| response regulator protein [Enterococcus faecalis TX1322] gi|229548862|ref|ZP_04437587.1| response regulator [Enterococcus faecalis ATCC 29200] gi|255971376|ref|ZP_05421962.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|256617795|ref|ZP_05474641.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256761680|ref|ZP_05502260.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256854231|ref|ZP_05559595.1| response regulator [Enterococcus faecalis T8] gi|256957218|ref|ZP_05561389.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256964254|ref|ZP_05568425.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|257077810|ref|ZP_05572171.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|257081169|ref|ZP_05575530.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis E1Sol] gi|257083837|ref|ZP_05578198.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|257086263|ref|ZP_05580624.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257089336|ref|ZP_05583697.1| two component system response regulator [Enterococcus faecalis CH188] gi|257415488|ref|ZP_05592482.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG] gi|257421170|ref|ZP_05598160.1| two component system response regulator [Enterococcus faecalis X98] gi|294780513|ref|ZP_06745876.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|307268001|ref|ZP_07549389.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307271926|ref|ZP_07553194.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307286734|ref|ZP_07566820.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|307290942|ref|ZP_07570832.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|312904486|ref|ZP_07763645.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|312952807|ref|ZP_07771669.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|227074689|gb|EEI12652.1| response regulator [Enterococcus faecalis TX0104] gi|229305883|gb|EEN71879.1| response regulator [Enterococcus faecalis ATCC 29200] gi|229308120|gb|EEN74107.1| response regulator protein [Enterococcus faecalis TX1322] gi|255962394|gb|EET94870.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|256597322|gb|EEU16498.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256682931|gb|EEU22626.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256709791|gb|EEU24835.1| response regulator [Enterococcus faecalis T8] gi|256947714|gb|EEU64346.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256954750|gb|EEU71382.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|256985840|gb|EEU73142.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|256989199|gb|EEU76501.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis E1Sol] gi|256991867|gb|EEU79169.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|256994293|gb|EEU81595.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|256998148|gb|EEU84668.1| two component system response regulator [Enterococcus faecalis CH188] gi|257157316|gb|EEU87276.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG] gi|257162994|gb|EEU92954.1| two component system response regulator [Enterococcus faecalis X98] gi|294452340|gb|EFG20779.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|295113884|emb|CBL32521.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterococcus sp. 7L76] gi|306498012|gb|EFM67539.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306502212|gb|EFM71496.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306511432|gb|EFM80434.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306515642|gb|EFM84169.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310629323|gb|EFQ12606.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|310632184|gb|EFQ15467.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|315027111|gb|EFT39043.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315029796|gb|EFT41728.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] gi|315032445|gb|EFT44377.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315034321|gb|EFT46253.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|315149686|gb|EFT93702.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] gi|315152998|gb|EFT97014.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315155229|gb|EFT99245.1| response regulator receiver domain protein [Enterococcus faecalis TX0043] gi|315157556|gb|EFU01573.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] gi|315165214|gb|EFU09231.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] gi|315172028|gb|EFU16045.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] gi|315577292|gb|EFU89483.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|323480106|gb|ADX79545.1| response regulator [Enterococcus faecalis 62] gi|327534506|gb|AEA93340.1| response regulator [Enterococcus faecalis OG1RF] gi|329577924|gb|EGG59345.1| response regulator protein GraR [Enterococcus faecalis TX1467] Length = 224 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 13/162 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I IS + + + G DD V KP ++A++ A+ RR S N + Sbjct: 67 IREVSKVPIIFISSRSTNMDMIMAMNMGADDFVTKPFQIDVLIAKINALLRR---SYNYS 123 Query: 127 ETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +T I + D E++GE+ L + E R+L LM GK + + ++ A++ Sbjct: 124 DTDSEVLSHNGITLNVDNGRMEIKGEMIDLSKNEYRLLYLLMKKHGKILTREKLLRALWD 183 Query: 180 LFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE V++N + +I++LRKK+ +++K +GY + Sbjct: 184 --DERFVDDNTLTVNINRLRKKIEQAGIAGYIETKVGVGYMV 223 >gi|226325419|ref|ZP_03800937.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758] gi|225206162|gb|EEG88516.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758] Length = 235 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 76/145 (52%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + R IR S+VP+I ++ + L F+ GVD+ ++KP + ++ARV AI RR Sbjct: 74 QTCREIRKESKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVTAILRRTNA 133 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S++ I + ++ G+ L +E +L Y + N+G +++ +I + ++ Sbjct: 134 LASDDLLHADGIEIDKAAHMVKIDGKPIELSYKEFELLTYFVENQGIALSREKILNNVWN 193 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR KL +K Sbjct: 194 -YDYFGDARTIDTHVKKLRSKLGDK 217 >gi|16077443|ref|NP_388257.1| two-component response regulator YclK [Bacillus subtilis subsp. subtilis str. 168] gi|221308189|ref|ZP_03590036.1| hypothetical protein Bsubs1_02118 [Bacillus subtilis subsp. subtilis str. 168] gi|221312511|ref|ZP_03594316.1| hypothetical protein BsubsN3_02104 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317448|ref|ZP_03598742.1| hypothetical protein BsubsJ_02123 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321710|ref|ZP_03603004.1| hypothetical protein BsubsS_02134 [Bacillus subtilis subsp. subtilis str. SMY] gi|23396952|sp|P94413|YCLJ_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yclJ gi|1805445|dbj|BAA09007.1| yclJ [Bacillus subtilis] gi|2632676|emb|CAB12183.1| two-component response regulator [YclK] [Bacillus subtilis subsp. subtilis str. 168] Length = 227 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 94/200 (47%), Gaps = 19/200 (9%) Query: 12 KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71 K+G+ A F DG LEG+ E W D+ ++ L + + R IR S Sbjct: 22 KEGFEAEFVHDG--LEGYQRFTEENW-------DLIILDIMLPSMDG--VTICRKIRETS 70 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNR 125 VP+I ++ + + F+ G DD V KP ++AR+ A+ RR K + + Sbjct: 71 TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKATGKAVIDEDM 130 Query: 126 AETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 ET + R+ + GE V L +E +L YL+ N + ++ Q+ ++G + Sbjct: 131 IETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLLEQVWG-YQFY 189 Query: 185 VEENVVESHISKLRKKLRNK 204 +E V+ HI +LRKKL ++ Sbjct: 190 GDERTVDVHIKRLRKKLASE 209 >gi|291618073|ref|YP_003520815.1| BaeR [Pantoea ananatis LMG 20103] gi|291153103|gb|ADD77687.1| BaeR [Pantoea ananatis LMG 20103] gi|327394471|dbj|BAK11893.1| transcriptional regulatory protein BaeR [Pantoea ananatis AJ13355] Length = 235 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 2/152 (1%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G+ L L R IR S++P+I ++ L + G DD V KP RE++ARV Sbjct: 59 LMLPGKDGLTLCREIRRDSELPIIMVTARTEEIDRLLGLEIGADDYVCKPFSPREVVARV 118 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 I RR+K S A + + R + E L E R+L+ L GK ++ Sbjct: 119 KTILRRVKRSPEDAPVASLLKVHESRFQASWRDEPLDLTPAEFRLLKTLSLEPGKVFSRE 178 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 Q+ + +Y + V + ++SHI LR+KL N Sbjct: 179 QLLNHLYDDY-RVVTDRTIDSHIKNLRRKLEN 209 >gi|228964356|ref|ZP_04125473.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228795340|gb|EEM42830.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 218 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 58 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199 >gi|126665458|ref|ZP_01736440.1| probable two-component response regulator [Marinobacter sp. ELB17] gi|126630086|gb|EBA00702.1| probable two-component response regulator [Marinobacter sp. ELB17] Length = 228 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 15/171 (8%) Query: 61 LELPRI----IRAHS-----QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L LPR+ I H+ Q+P+I ++ L+ L D+G DD + KP E+ AR Sbjct: 52 LTLPRVDGLDIVRHTRQQGNQLPIIILTARAELEEKLQGLDAGADDYLTKPFAMAELKAR 111 Query: 112 VAAIYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + A+ RR +N ++ G + + LPR E +IL+Y+M + + + Sbjct: 112 IRAVTRRRSSTNGDQLIVGQLTLDPASAQLTCGTGTATLPRSEFQILQYMMRHPDQVATR 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ +YG ++ E N +E HI LR+ ++G + + R +GY +D Sbjct: 172 RRLEEQLYG-WEPGAESNALEVHIHHLRR----RVGKATIRTIRGVGYFLD 217 >gi|15894830|ref|NP_348179.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15024503|gb|AAK79519.1|AE007665_6 Response regulator (CheY-like receiver domain and HTH DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325508968|gb|ADZ20604.1| Response regulator (CheY-like receiver domain and HTH DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 227 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 96/190 (50%), Gaps = 19/190 (10%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74 Y G DG+ L F ++F+ + D+ GE E+ RI+R S V Sbjct: 29 YCTTQGLDGIEL--FKKVKFQLVILDLMLPDID---------GE---EVCRILRRISDVY 74 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA-ETGPIR 132 + ++ +L+ ++ + G D+ + KP RE+ ARV A++RR+ K NN + G ++ Sbjct: 75 IFILTAKVALKDRIEGLNMGADEYLLKPCSPRELTARVNALFRRVFKDENNTDFDDGNLQ 134 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVE 191 + SD R ++ + L E IL L+ N+G+ +++ Q+ ++GL FD + ++ Sbjct: 135 ICSDKRIVRIKDQQISLTPNEFDILYALVLNKGRVLSREQLIERVFGLDFDGF--DRTID 192 Query: 192 SHISKLRKKL 201 HI +RKK+ Sbjct: 193 VHIKNIRKKI 202 >gi|300715798|ref|YP_003740601.1| two component transcriptional regulator, winged helix family [Erwinia billingiae Eb661] gi|299061634|emb|CAX58749.1| Two component transcriptional regulator, winged helix family [Erwinia billingiae Eb661] Length = 222 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 22/163 (13%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 + +PL+ I+ +L+ L D+G DD V P LAR+ A+ RR GP Sbjct: 71 NMLPLLIITARDALEDRLRGLDAGADDFVIAPFDMTAWLARIRAVMRR-----KEGHCGP 125 Query: 131 IRVFSDG---RDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V S+G DP +GEV+ L RE +L+ L+ G ++++++ IYG Sbjct: 126 --VLSNGIIRLDPASHEACDVEKGEVYRLSNREFALLQALLIRPGTLLSRSELEEKIYG- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + E +E N VE I LRKK +K + + R +G+ + N Sbjct: 183 WGEEIESNAVEFFIHALRKKFGSK----AIKNVRGVGWKVSGN 221 >gi|317132092|ref|YP_004091406.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315470071|gb|ADU26675.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 230 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 15/169 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R S VP++ ++ ++ DSG DD + KP E+LAR+ A R Sbjct: 63 VEVCRNVRLFSSVPILMLTAKGETVDKVEGLDSGADDYITKPFQMEELLARMRAALR--- 119 Query: 121 VSNNRAETGPIRVFSD-GRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ P+ V + DP L +RE +LEY+M NR + + QI Sbjct: 120 -GNDSPGQTPLLVVQNLTLDPFKHTVCRDDTEIELTKREFDLLEYMMRNRSIVLTRGQIL 178 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221 ++G E E N+V+ +I LR K+ + F+P + + R +GY +D Sbjct: 179 DHVWGETYEG-EANIVDVYIRYLRGKMDD--AFEPKLLHTVRGVGYVLD 224 >gi|254519629|ref|ZP_05131685.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] gi|226913378|gb|EEH98579.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] Length = 223 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 86/161 (53%), Gaps = 11/161 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I +S S + ++G DD + KP ++ ++ A+ RR S + Sbjct: 67 IREISKVPIIFLSSRDSNMDLIMGINNGGDDYITKPFSIEVLITKINALLRR---SYDYT 123 Query: 127 ETGPIRVFSDG-RDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + D D E + + L + E +IL L+ N+GK V++ +I +++ Sbjct: 124 FSDSVIYYKDTILDMEKCTFKYEDNIIELTKNEMKILSILIKNKGKVVSRDKIMMSLWN- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 DE V +N + ++++LR +L+++LG D + +K+ +GY I Sbjct: 183 DDEFVSDNTLTVNVTRLRGRLKDELGLNDFIKTKKGIGYMI 223 >gi|39937875|ref|NP_950151.1| two-component transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39651735|emb|CAE30257.1| two-component transcriptional regulator, winged helix family [Rhodopseudomonas palustris CGA009] Length = 221 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 103/215 (47%), Gaps = 18/215 (8%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L + GY+A DG E W + ED +AI L G L + + Sbjct: 18 RGLGEAGYLAEIVGDG----------EEAWFRGDT-EDYAAIILDLGLPGLDGLTILKRW 66 Query: 68 RAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R + ++ P++ ++ S +D D+G DD + KP E+LAR+ +I RR + Sbjct: 67 RDNGRLTPVLILTARGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSAGHASSV 126 Query: 127 ET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 T G + + V G+ L E R+ YL+ +RG+ V++ ++ IYG D+A Sbjct: 127 VTIGEVTLDERQMQVSVGGKPVSLSPLEYRLASYLVLHRGRVVSQYELAENIYGQ-DDAH 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E + ++R+ K+G D ++++R GY + Sbjct: 186 DSNAIEVLVGRVRR----KIGADLIETRRGFGYIV 216 >gi|120596934|ref|YP_961508.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|120557027|gb|ABM22954.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] Length = 231 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 8/151 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TG 129 P++ ++ S Q ++ D+G DD + KP H +E++AR+ A+ RR S +A G Sbjct: 74 PILILTARDSWQDKVEGLDAGADDYLTKPFHPQELVARLKALIRR---SAGKASPLVYNG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P + + + E+ L E ++ E+LM + G+ +KT + IY D ++ NV Sbjct: 131 PFSLNTSSLEIRKGDELINLSGSEYKLFEFLMLHPGEVKSKTVLTEHIYDQ-DFDLDSNV 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E I +LRKKL ++ +++ R GY + Sbjct: 190 IEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220 >gi|315646765|ref|ZP_07899880.1| two-component response regulator [Paenibacillus vortex V453] gi|315277695|gb|EFU41019.1| two-component response regulator [Paenibacillus vortex V453] Length = 232 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 76/141 (53%), Gaps = 8/141 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +S VP++ ++ S + G DD + KP E++ARV ++ RR N+R Sbjct: 70 IRKYSNVPVLMLTAKGSEPDKVTGLSLGADDYLTKPFSINELIARVQSLIRRYTTFNSR- 128 Query: 127 ETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ I +F + R V+ ++ L +E +L +L +N+G+ K QI++ ++ Sbjct: 129 DSVSILIFKGIVIDKEIRTVHVEDKLIDLTGKEFDLLVFLASNKGRVFTKKQIYTQVWN- 187 Query: 181 FDEAVEENVVESHISKLRKKL 201 D + ++N + S ISKLRKK+ Sbjct: 188 DDYSFDDNNIMSFISKLRKKI 208 >gi|262278413|ref|ZP_06056198.1| two-component system response regulator protein [Acinetobacter calcoaceticus RUH2202] gi|262258764|gb|EEY77497.1| two-component system response regulator protein [Acinetobacter calcoaceticus RUH2202] Length = 220 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GEKVL R VP+I I+ S+ ++ D G +D + KP E+ AR+ A Sbjct: 59 GEKVLTTIR--HKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQL 116 Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+ +S T G +++ + + G+ L +E +IL LM + + + Q+ Sbjct: 117 RKQTLSQQSVLTWGNLQLDTQAKVVSCAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A+Y + E +E N +E I +LRK K+G + + R LGY + Sbjct: 177 ALYA-WGEEIESNAIEVFIYQLRK----KIGSSSIKTIRGLGYRM 216 >gi|149377172|ref|ZP_01894921.1| two component transcriptional regulator, winged helix family protein [Marinobacter algicola DG893] gi|149358590|gb|EDM47063.1| two component transcriptional regulator, winged helix family protein [Marinobacter algicola DG893] Length = 228 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 85/167 (50%), Gaps = 13/167 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +RA + +P++ ++ + F+ G DD + KP + RE++AR+ A+ RR+ Sbjct: 62 LEVLRQLRAKTHLPVVLLTARGDETDRIVGFEVGADDYIPKPCNPRELIARLQALLRRVA 121 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++RA G +RV R L E +L+ L+A+ G V KT + Sbjct: 122 WDQEVGMDDSRA-YGDLRVEPVHRRIYQNDVALDLTATEYEVLQVLLAHAGSVVRKTDLM 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYS 219 G EA + ++ HIS LRKKL N DP +++ R LGYS Sbjct: 181 QWALGRRLEAYDRT-LDMHISNLRKKLGND---DPPRIETVRGLGYS 223 >gi|298345637|ref|YP_003718324.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304390674|ref|ZP_07372627.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654235|ref|ZP_07907143.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315657866|ref|ZP_07910746.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235698|gb|ADI66830.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304326430|gb|EFL93675.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491270|gb|EFU80887.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315491663|gb|EFU81274.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 241 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 14/165 (8%) Query: 65 RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +RA +P++ ++ ++ ++ +G DD V KP E++AR+ AI RR K S Sbjct: 73 RKLRASGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTKRSA 132 Query: 124 NRAETGPIRVFS---DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E +RV D EV G + L E ++L YLM N G+ V+KTQI ++ Sbjct: 133 --VEQPLLRVADLELDDNLYEVHRGGRLIDLSPTEFKLLRYLMVNEGRVVSKTQILDHVW 190 Query: 179 GLFDEAVEENVVESHISKLRKKLR--NKLGFDP---VDSKRFLGY 218 +D + +VES+IS LR+KL ++ G P + ++R +GY Sbjct: 191 E-YDWEGDAAIVESYISYLRRKLDAPDETGSIPPSLIQTRRGVGY 234 >gi|154687499|ref|YP_001422660.1| SpaR [Bacillus amyloliquefaciens FZB42] gi|154353350|gb|ABS75429.1| SpaR [Bacillus amyloliquefaciens FZB42] Length = 220 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +EL R IR P++ ++ ++ + +G DD + KP +E++ARV A Sbjct: 56 GTDGIELCRRIRPLVDSPILFLTAKSDEESIVKGLMTGADDYITKPFGVQELMARVNAHV 115 Query: 117 RRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR K R +G + F D ++ + PL + E +I+E L ++ + ++ QI Sbjct: 116 RRERREKHQTKRLISGFMFDF-DNKEVWIDDRKLPLTKNEYKIVECLAQHKNRTFSREQI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + +YGL +A+ + E I +RKK + G DP+ + +GY Sbjct: 175 YEEVYGLDGDALYSTITE-FIRTIRKKCKEH-GADPIKTVWGVGYK 218 >gi|297193586|ref|ZP_06910984.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151835|gb|EFH31368.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 184 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 4/122 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 59 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178 Query: 178 YG 179 +G Sbjct: 179 WG 180 >gi|171743333|ref|ZP_02919140.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC 27678] gi|171278947|gb|EDT46608.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC 27678] Length = 243 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 20/172 (11%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI + P++ ++ Q + G DD V KP E++AR+ AI RR + Sbjct: 71 RIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TQE 127 Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E PI + D D G+ L E ++L YLM N G+ ++K QI ++ Sbjct: 128 QVEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP----------VDSKRFLGYSI 220 +D + +VES+IS LRKK+ + D +++KR +GY I Sbjct: 188 Q-YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMI 238 >gi|298246544|ref|ZP_06970350.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554025|gb|EFH87890.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 244 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 28/155 (18%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR------------------LKVSNNRAETGPIR 132 + G DD V KP RE+LARV A+ RR + +N GP+R Sbjct: 95 LEVGADDYVTKPFGRRELLARVRALIRRSDYVPGGEGENGEEPEQERRSANRELVAGPLR 154 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + GR +G+ L ++ +L YL+ NRG + + Q+ ++G +D + V+ Sbjct: 155 IDLAGRRVNCRGQDIELQPKQFELLAYLVRNRGTVLTRDQLLHNVWG-YDYVGDTRTVDV 213 Query: 193 HISKLRKKLRNKLGFDPVDSK-----RFLGYSIDW 222 H+ LR+KL DP + K R +GY W Sbjct: 214 HVRWLREKLEE----DPANPKLIQTVRGVGYVFRW 244 >gi|312115104|ref|YP_004012700.1| two component transcriptional regulator PhoB, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311220233|gb|ADP71601.1| two component transcriptional regulator PhoB, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 236 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 20/172 (11%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +RA +P++ ++ + G DD V KP E+LARV AI R Sbjct: 62 IELCRRLRAGKTARTIPILLLTARGEETDRIRGLTVGADDYVVKPFSVPELLARVKAILR 121 Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R L+V + + RV GR+ + F ++LE+LM + G+ Sbjct: 122 RAAPERISQTLEVEDIELDRETYRVMRSGREVRLGPTEF-------KLLEFLMESPGRVF 174 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++TQ+ ++G D V+E V+ HI +LRK + DP+ + R GY++ Sbjct: 175 SRTQLLDGVWG-RDVYVDERTVDVHIGRLRKAINRGKEKDPIRTVRGAGYAL 225 >gi|260463371|ref|ZP_05811572.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259030961|gb|EEW32236.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 225 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 13/148 (8%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R++RA ++VP+I ++ SL + + G DD + KP E+ AR+ RR Sbjct: 60 MEVLRMLRARGNRVPVIVLTANASLDGRVKGLNEGADDYLAKPFQIEELEARIRVQLRR- 118 Query: 120 KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +N+R T P+ D R + GE L RE +LE LM G+ V+K + Sbjct: 119 --ANDR--TAPMITCGDLVFDTNTRLFSLAGETLALTPREHAVLEQLMVKAGRTVSKAAL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 +AIY F+ + + +E ++ ++RKKL Sbjct: 175 SAAIYD-FETDADPSAIEIYVHRVRKKL 201 >gi|215488353|ref|YP_002330784.1| DNA-binding transcriptional regulator QseB [Escherichia coli O127:H6 str. E2348/69] gi|331684666|ref|ZP_08385258.1| transcriptional regulatory protein QseB [Escherichia coli H299] gi|215266425|emb|CAS10863.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli O127:H6 str. E2348/69] gi|331078281|gb|EGI49487.1| transcriptional regulatory protein QseB [Escherichia coli H299] gi|332086683|gb|EGI91823.1| transcriptional regulatory protein qseB [Shigella boydii 5216-82] Length = 219 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSKMGFSIDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 L---REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + R + GE L +E +LE LM N G+ + + I +Y Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|254426949|ref|ZP_05040656.1| response regulator receiver domain protein [Alcanivorax sp. DG881] gi|196193118|gb|EDX88077.1| response regulator receiver domain protein [Alcanivorax sp. DG881] Length = 220 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 64/234 (27%), Positives = 104/234 (44%), Gaps = 35/234 (14%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSA-----IEAFLIGK 56 +LI+D AL+ DG A G ++ F + ARE ++A +A ++ Sbjct: 3 ILLIEDDALLGDGIQA----------GLQAMGFTVAWVTRAREGLAAWKSVEFDALVLDL 52 Query: 57 G----EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 G + L + A P++ ++ ++Q +D G DD + KP E+ AR+ Sbjct: 53 GLPDQDGGQALCQWRDAGLTAPVLILTARDAVQDRIDGLQRGADDYLVKPFDLGELAARL 112 Query: 113 AAIYRRLK------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 A+ RR + + + R P R D EV+ L RRE +L L+ +RG+ Sbjct: 113 QALLRRSRGQASPLIEHGRVRVDPFRQQVWLADQEVE-----LQRREMALLLALLQSRGR 167 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + Q+ +YG D VE N + HI LR+ KLG V++ R GY + Sbjct: 168 LLTPDQLADRVYGWVD-GVESNALAVHIHNLRR----KLGSGIVETVRGGGYRL 216 >gi|121602270|ref|YP_988746.1| transcriptional regulator FeuP [Bartonella bacilliformis KC583] gi|120614447|gb|ABM45048.1| transcriptional regulator FeuP [Bartonella bacilliformis KC583] Length = 221 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD V KP + E++AR+ A+ RR A G + + + V G++ L Sbjct: 91 IDAGADDYVVKPFYLEEVMARLRALIRRASGHATSALSCGAVLLDTKTSRVFVDGQLIKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + K V++T++ +Y FD + N +E + +LRK KLG D Sbjct: 151 TSHEFRLLSYLMHHCDKVVSRTELIEHLYDQDFDR--DSNTIEVFVRRLRK----KLGVD 204 Query: 209 PVDSKRFLGYSI 220 +++ R +GY + Sbjct: 205 FIETIRGMGYRV 216 >gi|116751092|ref|YP_847779.1| two component transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116700156|gb|ABK19344.1| two component transcriptional regulator, winged helix family [Syntrophobacter fumaroxidans MPOB] Length = 263 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 3/131 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ +S S+ + + G DD + KP E+LARV ++ RR KV+ + Sbjct: 104 TPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSKVNQETVQLKAGD 163 Query: 133 VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 ++ D V E F L +E +LEYLM N+G+ V + +I ++G ++ NVV Sbjct: 164 LWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVWG-YNFVPATNVV 222 Query: 191 ESHISKLRKKL 201 E HI +LR+KL Sbjct: 223 EVHICRLREKL 233 >gi|116493525|ref|YP_805260.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116103675|gb|ABJ68818.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 233 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 100/227 (44%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D I F D + + + EE L E I L+ L Sbjct: 4 ILVVDDEKPISD--IVKFNLDKEGYDVVTAYDGEEALAQVEEEKPDLILLDLMLPKIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +RA +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 62 EVARQVRAKHNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQDQ 121 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N + GP+ + SD G L RE +L YL + G+ + + + Sbjct: 122 LQQDDETVKNNIKIGPLVINSDSYSVTRDGMQLDLTHREFELLHYLAQHTGQVMTREHLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220 ++G +D + V+ + +LR+K+ G + ++R +GY + Sbjct: 182 QTVWG-YDYFGDVRTVDVTVRRLREKIEETPGNPQILVTRRGVGYYL 227 >gi|227890585|ref|ZP_04008390.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|301299690|ref|ZP_07205943.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a] gi|227867523|gb|EEJ74944.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|300214343|gb|ADJ78759.1| Two-component response regulator [Lactobacillus salivarius CECT 5713] gi|300852702|gb|EFK80333.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a] Length = 228 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 10/189 (5%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L+ + ED AI L+ LE+ R +R P+I ++ S+ + D G DD Sbjct: 38 LELALDEDWDAILLDLMLPELNGLEVCRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSN----NRAETGPIRVFSDGRDPEV---QGEVFPLP 150 + KP E+LAR+ A+ RR+++ N N+ T R + ++ V E+ L Sbjct: 98 YIVKPFAIEELLARLRAVLRRVELENEQNGNKQTTLTYRDLTIEKENRVVRRGDEIIELT 157 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP- 209 +RE +L LM N +A+ + ++G ++ +E NVV+ +I LR K+ ++ G D Sbjct: 158 KREYELLLTLMENINVVLARDTLLKKVWG-YETQIETNVVDVYIRYLRNKI-DRPGEDSY 215 Query: 210 VDSKRFLGY 218 + + R GY Sbjct: 216 IQTVRGTGY 224 >gi|192293660|ref|YP_001994265.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|192287409|gb|ACF03790.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] Length = 221 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 103/215 (47%), Gaps = 18/215 (8%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L + GY+A DG E W + ED +AI L G L + + Sbjct: 18 RGLGEAGYLAEIVGDG----------EEAWFRGDT-EDYAAIILDLGLPGLDGLTILKRW 66 Query: 68 RAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R + ++ P++ ++ S +D D+G DD + KP E+LAR+ +I RR + Sbjct: 67 RDNGRLTPVLILTARGSWAERVDGIDAGADDYLPKPFQMEELLARLRSIVRRSAGHASSV 126 Query: 127 ET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 T G + + V G+ L E R+ YL+ +RG+ V++ ++ IYG D+A Sbjct: 127 VTIGEVMLDERQMQVSVGGKPVSLSPLEYRLASYLVLHRGRVVSQYELAENIYGQ-DDAH 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E + ++R+ K+G D ++++R GY + Sbjct: 186 DSNAIEVLVGRVRR----KIGADLIETRRGFGYIV 216 >gi|186686379|ref|YP_001869575.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468831|gb|ACC84632.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 232 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 94/200 (47%), Gaps = 18/200 (9%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L ++GYI DG E+ Q+ + D+ ++ L GK LE+ + + Sbjct: 18 RLLTREGYIVDAAFDGTI--------GSEYAQAGSY-DLLILDWMLPGK--TGLEICQQL 66 Query: 68 RAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R + P++ ++ +L + D+G DD + KP RE+LARV A+ RR Sbjct: 67 RRQGKTTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRSGSQTYET 126 Query: 127 ETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 TG + V D E QG + L ++E ++L+Y M + G+ + QI ++ Sbjct: 127 TTGRLTVADLELDCENQVAYRQGRIIELSQKESQLLQYFMEHTGQLMTHAQIMENLWQ-E 185 Query: 182 DEAVEENVVESHISKLRKKL 201 +E NV+ + I LR+K+ Sbjct: 186 EEQPSSNVIAALIRLLRRKI 205 >gi|312867423|ref|ZP_07727632.1| putative sensory transduction protein RegX3 [Streptococcus parasanguinis F0405] gi|311097124|gb|EFQ55359.1| putative sensory transduction protein RegX3 [Streptococcus parasanguinis F0405] Length = 217 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP + ++ + L F D + KP + R+ AI+++L+ Sbjct: 60 LEVLKTIRKTSSVPGLMLTAFHDEDYKLTAFGELADGYLEKPFSLSLLKVRIEAIFKKLQ 119 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S R T G RV + + G+ + +E ILEYL+ + GK ++QI A++ Sbjct: 120 PS--RVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWK 177 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL D + + R +GY ++ Sbjct: 178 ETEEIPFDRVIDVYIKELRKKLE----LDCIVTVRNVGYKLE 215 >gi|331674568|ref|ZP_08375328.1| transcriptional regulatory protein QseB [Escherichia coli TA280] gi|331068662|gb|EGI40057.1| transcriptional regulatory protein QseB [Escherichia coli TA280] Length = 219 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDTVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 L---REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + R + GE L +E +LE LM N G+ + + I +Y Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|326317102|ref|YP_004234774.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373938|gb|ADX46207.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 230 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 5/169 (2%) Query: 57 GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G L+L + +RA QVP++ ++ S++ + G DD + KP E+LAR+ A+ Sbjct: 59 GMTGLDLCQSLRAEGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEAL 118 Query: 116 YRRLKVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR + RA + + + + G L +E LE LM+ G+ ++ + Sbjct: 119 LRRGREQRPRATRLQVADLVLDLERMQASRAGRPIALTAKELAFLELLMSAPGRLCSRER 178 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I S ++G+ ++ + NVV+ ++ +LR K+ + + R LGY +D Sbjct: 179 ILSNVWGMHEDPL-TNVVDVYVRRLRSKIDEGHPLALLKTVRGLGYRLD 226 >gi|258545920|ref|ZP_05706154.1| DNA-binding response regulator [Cardiobacterium hominis ATCC 15826] gi|258518798|gb|EEV87657.1| DNA-binding response regulator [Cardiobacterium hominis ATCC 15826] Length = 225 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 9/158 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNN 124 +R ++ P++ ++ L + L D G DD + KP E+LAR+ A+ RR +NN Sbjct: 66 LRQNAATPVLILTARDDLDSRLRGLDGGADDYLIKPFELAELLARMRAVLRRHGQHSANN 125 Query: 125 RAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + G I + + GE L RE IL LM G +++ ++ YG + Sbjct: 126 ELDNGIITLNPATHEARRHDNGETRQLTAREYTILHALMQRPGHILSRAELEDKTYG-WG 184 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E VE N ++ I LRK KLG D + + R +G+ + Sbjct: 185 EEVESNAIDYLIHALRK----KLGADSIRNVRGVGWCV 218 >gi|302522283|ref|ZP_07274625.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|318060992|ref|ZP_07979713.1| two-component system regulator [Streptomyces sp. SA3_actG] gi|318077282|ref|ZP_07984614.1| two-component system regulator [Streptomyces sp. SA3_actF] gi|333024045|ref|ZP_08452109.1| putative two-component system regulator [Streptomyces sp. Tu6071] gi|302431178|gb|EFL02994.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|332743897|gb|EGJ74338.1| putative two-component system regulator [Streptomyces sp. Tu6071] Length = 228 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 68/138 (49%), Gaps = 4/138 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP+I ++ +++ + + G DD V KP RE+LAR+ A+ RR S + Sbjct: 71 IRTRSAVPVIMVTARADVRSRIHGLNLGADDYVVKPYDTRELLARIHAVARRTHSSASEP 130 Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 T GP+R+ + R+ V G L R+E +L L G + QI S ++ E Sbjct: 131 GTTALGPVRLTPETREVSVHGVPVQLTRKEFDLLALLALRPGVVYRREQIISEVWRTSWE 190 Query: 184 AVEENVVESHISKLRKKL 201 +E HI+ LR K+ Sbjct: 191 GTGRT-LEVHIASLRAKI 207 >gi|332999989|gb|EGK19572.1| transcriptional regulatory protein qseB [Shigella flexneri K-218] Length = 219 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R Q P++ ++ +L ++ G DD + KP E+ A++ A+ RR Sbjct: 63 L---REWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAAKLEALMRRT 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + R + GE L +E +LE LM N G+ + + I +Y Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|331663464|ref|ZP_08364374.1| transcriptional activator protein CopR [Escherichia coli TA143] gi|331059263|gb|EGI31240.1| transcriptional activator protein CopR [Escherichia coli TA143] Length = 269 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 58 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 117 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 118 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 177 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 178 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 233 >gi|329946290|ref|ZP_08293884.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386] gi|328527582|gb|EGF54577.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386] Length = 248 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 9/166 (5%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R HS VP++ ++ +++ + +G DD V KP E++AR+ A+ RR Sbjct: 76 LEVMRRVRGHSPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRS 135 Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S + E G +R+ D + + L E +L YLM N + ++K QI Sbjct: 136 GASEEKPDSLLEVGDLRMDEDSHEVWRGEDEIQLTATEFELLRYLMRNPRRVLSKPQILD 195 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 ++ +D + N+VE +IS LR+K+ G +P + + R +GY + Sbjct: 196 RVWN-YDFGGQANIVELYISYLRRKIDK--GREPMIHTMRGVGYVL 238 >gi|332160068|ref|YP_004296645.1| DNA-binding transcriptional regulator BasR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607372|emb|CBY28870.1| transcriptional regulatory protein basR/pmrA [Yersinia enterocolitica subsp. palearctica Y11] gi|325664298|gb|ADZ40942.1| DNA-binding transcriptional regulator BasR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862041|emb|CBX72207.1| transcriptional regulatory protein pmrA [Yersinia enterocolitica W22703] Length = 219 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 80/155 (51%), Gaps = 6/155 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 R H +P++ ++ +L+ +D D+G DD + KP E+LARV A+ RR + S+N Sbjct: 68 RQHITLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQGQSDNLI 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + + + + +QG+ + +E IL L+ G+ V + + +Y D+ + Sbjct: 128 QQDDLSLNLSTQQVCLQGQALEVTPKEFAILSRLIMRAGQTVNRELLQQDLYTWNDD-LG 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 N +E HI LR+ KLG D + + R +GY ++ Sbjct: 187 SNTLEVHIHNLRR----KLGKDRIRTIRGIGYRLE 217 >gi|304397451|ref|ZP_07379329.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|304355069|gb|EFM19438.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] Length = 235 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 12/153 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G L L R IR HS++P+I ++ L + G DD + KP RE++ARV I Sbjct: 63 GTDGLTLCREIRRHSELPIIMVTARTEEIDRLLGLELGADDYICKPFSPREVVARVKTIL 122 Query: 117 RRLKVSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR++ S ++ + R F+ R+ + L E R+L+ L GK ++ Sbjct: 123 RRVRRSAEEPQSASLLRVDESRFFASWREKPLD-----LTPAEFRLLKTLSLEPGKVFSR 177 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 Q+ + +Y + V + ++SHI LR+KL N Sbjct: 178 EQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLEN 209 >gi|121594772|ref|YP_986668.1| two component transcriptional regulator [Acidovorax sp. JS42] gi|120606852|gb|ABM42592.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 225 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 105/224 (46%), Gaps = 15/224 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---E 58 ++++D ALV G A G+ L GF S Q+ A +A ++ G Sbjct: 3 ILIVEDNALVASGIQA-----GLELHGFTSDTAGSVAQAQAHMASRQFDACVLDLGLPDG 57 Query: 59 KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIY 116 + L R RA +P++ ++ +++ + F +G DD + KP +E +L A + Sbjct: 58 DGISLLRQWRAKGLALPVLILTARSTIEDKVAGFQTGTDDYLTKPFDLQELVLRLRALLR 117 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R +++ G +V + G + RRE +L+ L+ G+ ++ Q+ + Sbjct: 118 RAGGRTSDLLALGDCQVNMATGEVTRNGVAIDISRREWALLQALLQAHGRVLSAAQLHDS 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YGL D+ V+ N V H+ LRK KLG D +D+ R LG+ + Sbjct: 178 LYGL-DQDVDSNTVNVHVHHLRK----KLGADVIDTVRGLGFRL 216 >gi|257057097|ref|YP_003134929.1| response regulator with CheY-like receiver domain-containing protein and winged-helix DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586969|gb|ACU98102.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 221 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 54/216 (25%), Positives = 104/216 (48%), Gaps = 20/216 (9%) Query: 16 IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE---LPRIIRAH-S 71 IA F + G++ GF E+ + + + ++ G ++ + R +RA Sbjct: 13 IAAFVNKGLTANGFTVTVVEDGQAAYEYALTGSFDLMVLDIGLPGMDGFTVLRKLRAERC 72 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 +P+I ++ S+Q T+ + G DD + KP E+LARV RL++ ++R++ + Sbjct: 73 PIPVIILTARDSVQDTVAGLEGGADDYMPKPFRFEELLARV-----RLRLVSDRSQEPTV 127 Query: 132 RVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + R V GE L RE + E + + G+ +++ Q+ S ++G +D Sbjct: 128 LTYGGLQLDLRTRRAHVGGETVDLSAREFALAETFLRHPGQVLSREQLLSQVWG-YDFDP 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 NVV+ ++ + LR KLG D + + R +GY ++ Sbjct: 187 GSNVVDVYV----RYLRRKLGADRITTVRGMGYRLE 218 >gi|222100288|ref|YP_002534856.1| Phosphate regulon transcriptional regulatory protein PhoB [Thermotoga neapolitana DSM 4359] gi|221572678|gb|ACM23490.1| Phosphate regulon transcriptional regulatory protein PhoB [Thermotoga neapolitana DSM 4359] Length = 226 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 6/162 (3%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G + E+P + +H ++ +I +S + + G DD V KP + RE++ARV A+ Sbjct: 59 GVAMEEIPEMKVSHPEMAIIIVSARDRDMDRIFGIELGADDYVTKPFNPREVIARVKAVL 118 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR+ G + +F + G + +E +L+ L + K ++ +I + Sbjct: 119 RRMGKDQKVLRFGKLEIFPEDYVVRYDGRNVEMTAKEFELLKLLASAPNKIFSREEILNR 178 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I+G D+ V + VV+ HIS +R+K+G + + + R LGY Sbjct: 179 IWG--DDYVSDRVVDVHIS----AIRSKIGKNWIKTVRGLGY 214 >gi|295093603|emb|CBK82694.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 230 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 2/132 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 +P+I ++ +L+ F G DD + KP E+LARV A+YRR ++ G + Sbjct: 74 IPVIMLTALGTLENKTAAFSRGADDYIVKPFEFDELLARVNALYRRSHQIHTFDYSYGDV 133 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 D R + + L RE ++ E L+ + GK V++ +I +I+GL N++ Sbjct: 134 TYLIDSRTLQCGDQSVRLTNRESQLFELLLRSAGKIVSQDEIIESIWGLTSNVGNGNIL- 192 Query: 192 SHISKLRKKLRN 203 ++I LR +L+ Sbjct: 193 NYIYFLRNRLKT 204 >gi|262275301|ref|ZP_06053111.1| probable two-component response regulator protein [Grimontia hollisae CIP 101886] gi|262220546|gb|EEY71861.1| probable two-component response regulator protein [Grimontia hollisae CIP 101886] Length = 231 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 95/184 (51%), Gaps = 12/184 (6%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 DV+ ++ L G L L + +RA +QV P++ ++ + ++ ++G DD + KP Sbjct: 46 DVAIVDRML--PGLDGLSLVKALRA-AQVGTPILFLTALGGVDDRVEGLEAGGDDYLTKP 102 Query: 103 IHHREILARVAAIYRR--LKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 E+LARV A+ RR LK + E G + + +G+ L +E RILE Sbjct: 103 FAFSELLARVTALSRRAVLKTTEAMPEISYGDVVLNLFEHSATRRGQPLDLQPKEFRILE 162 Query: 159 YLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217 + + G+ + +T + ++ + FD + +VVE+HIS+LR KL G + + R +G Sbjct: 163 LFLRHPGRVITRTMLLEHVWDIHFDP--QTSVVETHISRLRNKLEKPFGDTLIQTVRGVG 220 Query: 218 YSID 221 Y ++ Sbjct: 221 YKLE 224 >gi|326441956|ref|ZP_08216690.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 235 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 9/164 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121 L R+ R +VP++ ++ +++ + +G DD V KP E++AR+ + RR Sbjct: 71 LARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAA 130 Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S R E+ G + + D R+ G+ L E +L YLM N + ++K QI + Sbjct: 131 SAARGESLLAVGDLTLDEDSREVSRGGQAIHLTATEFELLRYLMRNPRRVLSKAQILDRV 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + +D + NVVE ++S LRKK+ G P + ++R GY I Sbjct: 191 WS-YDFGGQANVVELYVSYLRKKI--DAGRAPMIHTRRGAGYLI 231 >gi|167761675|ref|ZP_02433802.1| hypothetical protein BACSTE_00009 [Bacteroides stercoris ATCC 43183] gi|167763397|ref|ZP_02435524.1| hypothetical protein BACSTE_01771 [Bacteroides stercoris ATCC 43183] gi|167698691|gb|EDS15270.1| hypothetical protein BACSTE_01771 [Bacteroides stercoris ATCC 43183] gi|167700456|gb|EDS17035.1| hypothetical protein BACSTE_00009 [Bacteroides stercoris ATCC 43183] Length = 229 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 95/195 (48%), Gaps = 24/195 (12%) Query: 21 DDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------KGEKVLELPRIIRAHSQVP 74 ++G ++ NS E + + D+S + L+ G K+ + + + +++P Sbjct: 25 NEGYEVDTANSAE------DALKMDISTYDLLLLDVMMGEISGFKMASMLKKEKKTAKIP 78 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134 +I I+ + T+ F+ G DD ++KP RE+ ARV A+ RR + E P ++ Sbjct: 79 IIFITAKDTENDTVTGFNIGADDYISKPFSLREVAARVKAVLRRTR--QTETERAPEQIA 136 Query: 135 SDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VE 186 + + GE PL ++E IL L+ N+G+ ++ I S I+ DE V Sbjct: 137 YKSLVLDIIKKKVSIDGEEAPLTKKEFEILLLLLQNKGRVFSREDILSRIWS--DEVYVL 194 Query: 187 ENVVESHISKLRKKL 201 + ++ +I++LRKK+ Sbjct: 195 DRTIDVNITRLRKKI 209 >gi|322804592|emb|CBZ02144.1| two-component response regulator YvcP [Clostridium botulinum H04402 065] Length = 230 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 9/164 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S++P+I IS S + ++G DD + KP + I+A++ + RR Sbjct: 66 RRIRQKSKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYA 125 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 KV E ++ + D + E + E + ++E +LEYLM K V + + I+ Sbjct: 126 PKVDEKIVELQGLKFYKDRSEIEFKDERVIITKKEGILLEYLMKKYPKVVNRDFLLEKIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 E VEEN + ++S++RK+L ++LG D +++ R +GY ++ Sbjct: 186 DDI-EFVEENTLNVNVSRIRKRL-HELGIEDGIETVRGVGYRLN 227 >gi|311894023|dbj|BAJ26431.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 97/213 (45%), Gaps = 10/213 (4%) Query: 16 IALFGDDGVSLEGFNSLEFEEWLQSSARE-----DVSAIEAFLIG-KGEKVLELPRIIRA 69 +AL G+ EGF + L AR DV ++ L G G +V R+ A Sbjct: 12 LALAIKHGLEAEGFTVDTVHDGLSGLARATDHSYDVVILDIMLPGLNGYRVC--ARLRAA 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAET 128 S ++ ++ + D+G DD ++KP ++AR+ A+ RR+ + RA Sbjct: 70 GSDAGILMLTAKDGEWDEAEALDTGADDYLSKPFSFVVLVARLKALARRIGSRAPRRAVL 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + V S R G L RE +L++L G+ V+K +I ++ ++ + N Sbjct: 130 GDLVVDSAARTCSRAGRPIALTPREFAVLDHLARRAGEAVSKREILEQVWDAAADS-DPN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE HIS LR+K+ G + + R GY ++ Sbjct: 189 TVEVHISALRRKIDTPFGRSALQTVRGAGYRLE 221 >gi|312112485|ref|YP_003990801.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|311217586|gb|ADP76190.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 232 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 10/169 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +EL +IR P+I +S + + G DD ++KP +E+ AR+ RR + Sbjct: 62 MELCSMIRDRVDCPIIFVSAKTLEEDKIQALSVGGDDYISKPFSLKELKARIDCHLRREE 121 Query: 121 V--SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 SN R + D EV +G L ++E I++ LM N+ +K +IF + Sbjct: 122 RIRSNERQLLSSKNITIDLLANEVFCKGVKLHLTKKEYEIMKLLMLNKNMVFSKERIFES 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDWN 223 ++GL E+ E V ES I +RKK+R+ DP S K G W+ Sbjct: 182 VWGLDSESQLETVTES-IKNIRKKIRS---LDPEHSYIKTLYGLGYKWD 226 >gi|260914398|ref|ZP_05920867.1| two component response regulator [Pasteurella dagmatis ATCC 43325] gi|260631499|gb|EEX49681.1| two component response regulator [Pasteurella dagmatis ATCC 43325] Length = 223 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 14/195 (7%) Query: 9 ALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 L K G+ + F D LE NS ++ + + +E + EK Sbjct: 19 GLTKSGFTVDWFQDGRTGLEAVNSAPYDAVVLDLTLPKMDGLEILQTWRKEK-------- 70 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNRA 126 VP++ ++ +L + G DD + KP E++AR+ A I RR SN Sbjct: 71 ---CDVPVLILTARDTLDERVTGLQRGADDYLCKPFALAEVVARLQALIRRRYGQSNPII 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 E IR + R +Q + L RE ++LE M N+ + + + I +Y +D+ V Sbjct: 128 EHSQIRFDPNQRKVFLQNQEVALTTREYKLLELFMLNKDRVLPRAVIEEKLYT-WDDEVS 186 Query: 187 ENVVESHISKLRKKL 201 N +E HI LR+KL Sbjct: 187 SNALEVHIYNLRQKL 201 >gi|218896331|ref|YP_002444742.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218540658|gb|ACK93052.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 223 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 63 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 122 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 123 KQEQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204 >gi|15893741|ref|NP_347090.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023306|gb|AAK78430.1|AE007559_8 Response regulator (CheY-like and HTH domains) [Clostridium acetobutylicum ATCC 824] gi|325507864|gb|ADZ19500.1| Response regulator (CheY-like and HTH domains) [Clostridium acetobutylicum EA 2018] Length = 227 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 4/164 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R +R +S +P+I ++ + FD G DD + KP +E+++R+ A+ RR Sbjct: 62 DLCRELRKNSDIPIIFLTACDEEVNVVMGFDLGADDYITKPFKIKELISRIKAVLRRCSS 121 Query: 122 SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +E V D R + + L E ++L + N G+ + + I ++ Sbjct: 122 REEVSELKSRDVLIDKRTLKAYKNDKEIVLTHMELKLLILFIENSGQTLKRNLILQRLWD 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + +E V++N + +I +LR+KL+ + + R +GY WN Sbjct: 182 ISEEFVDDNTLSVYIKRLREKLKEDSKNPYIVTVRGIGYR--WN 223 >gi|330997603|ref|ZP_08321449.1| putative transcriptional activator protein IrlR [Paraprevotella xylaniphila YIT 11841] gi|329570314|gb|EGG52049.1| putative transcriptional activator protein IrlR [Paraprevotella xylaniphila YIT 11841] Length = 227 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 2/142 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + R Q +I IS S++ ++ D G DD + KP H E+ ARV ++ RR K Sbjct: 63 LAHLKRTRKQESVIIISAKDSIEDKVEGLDLGADDYLAKPFHLAELNARVKSLLRRKKAG 122 Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-L 180 + + G + + D R V G L R+E +L Y ++N + + + + +++G Sbjct: 123 GDTSIVLGNLTLVPDTRKATVDGNELNLNRKEFDLLYYFISNPNRLINRMALAESVWGDH 182 Query: 181 FDEAVEENVVESHISKLRKKLR 202 D+A + + S + LRKK++ Sbjct: 183 IDQADSLDFIYSQVKNLRKKMK 204 >gi|297565507|ref|YP_003684479.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849956|gb|ADH62971.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 222 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 6/165 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ R IRA P+I ++ L + G DD V KP RE++ARV A+ RR Sbjct: 59 LEVLRRIRADGNTPVILVTARSEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRRAN 118 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 L+ + GP+ + ++ V L E R+LE L G+ + ++ A Sbjct: 119 PLESAATVLRAGPLEIDTEWVMARVGASRLELTPTEFRLLETLARTPGRAFTRQELLEA- 177 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 L D E V++ H+ LRKKL +++ R +GY + W Sbjct: 178 -ALPDSDALERVIDVHLKNLRKKLEAAGATGLLETVRGVGYRL-W 220 >gi|295677563|ref|YP_003606087.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295437406|gb|ADG16576.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 220 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 LEVLRALRARGNALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQ 119 Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S++ G + + + G L RE +LE L+A G ++K+Q+ +Y Sbjct: 120 SGRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + E + N VE +I LRK KLG D + + R LGY I Sbjct: 180 G-WGEEIGSNTVEVYIHALRK----KLGADLIRNVRGLGYMI 216 >gi|269104518|ref|ZP_06157214.1| response regulator [Photobacterium damselae subsp. damselae CIP 102761] gi|268161158|gb|EEZ39655.1| response regulator [Photobacterium damselae subsp. damselae CIP 102761] Length = 219 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 8/151 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPI 131 P++ +S L ++ ++G DD + KP E++AR+ A RR + + + GP+ Sbjct: 73 CPIVILSARSELTQRVEGLNAGADDYLTKPFQMVELVARLRAQLRRSTGNTSPVIQAGPL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190 + + G+ L E ++L YLM N+ K +++T++ IY FD + N + Sbjct: 133 ELDTRSSKVTFHGQPVELTALEFKVLSYLMHNQDKVISRTELVEHIYKQDFDR--DSNTI 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E I ++R+ K+G D + + R LGY I+ Sbjct: 191 EVFIGRIRR----KVGTDVIKTVRGLGYRIN 217 >gi|322420870|ref|YP_004200093.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320127257|gb|ADW14817.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 226 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 2/145 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G LE+ + IR SQ+P+I I+ L + G DD V KP RE++ARV + Sbjct: 58 GRDGLEICKEIRTFSQLPIIMITARVEEIDRLLGLELGADDYVCKPFSPREVVARVKTVL 117 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR + G + + D + QG L E ++L +L N G+ +++Q+ Sbjct: 118 RR-SGEHPAPAAGGLTLDPDRYSAQWQGRDLDLTVVEFKLLHFLYQNPGRIYSRSQLMDR 176 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 IY V + ++SHI KLRKK+ Sbjct: 177 IYS-DQRIVSDRTIDSHIKKLRKKI 200 >gi|117927299|ref|YP_871850.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117647762|gb|ABK51864.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 228 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 88/186 (47%), Gaps = 10/186 (5%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 E L+ R+ + L+ G ++ R +R S VP+I ++ S + + G Sbjct: 37 EGLELFERQGADLVLLDLMLPGLSGTDVCRRLRERSNVPIIMLTARDSEVDKVVGLELGA 96 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLP 150 DD V KP RE++AR+ A+ RR + E GP+R+ D V+G LP Sbjct: 97 DDYVTKPFSSRELVARIRAVLRRRDGGGDEQRTTVLEAGPVRIDIDRHVVLVRGAPVHLP 156 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 RE +LE L+ + G+ + + Q+ I+G D + ++ H+ +LR ++ + DP Sbjct: 157 LREFELLEMLVRHAGRVLTRQQLIDRIWG-GDYVGDTKTLDVHVKRLRSRIED----DPS 211 Query: 211 DSKRFL 216 + + + Sbjct: 212 EPRHLV 217 >gi|260598679|ref|YP_003211250.1| transcriptional regulatory protein TctD [Cronobacter turicensis z3032] gi|260217856|emb|CBA32382.1| Transcriptional regulatory protein tctD [Cronobacter turicensis z3032] Length = 226 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 5/162 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ R VP++ ++ + ++ + + G DD + KP E+ AR+ A+ RR + Sbjct: 63 LSRLRRRGQAVPVLLLTAHGAVADRVKGLNEGADDYLPKPFELSELEARLRALVRRSEGQ 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 A+ F D E+QG L RE +L LM R + V + Q+F ++ L D Sbjct: 123 VQEAQRLGELTFHDAGYFELQGRPLALTPREHALLTVLMYRRRRPVTRQQLFEQVFSLSD 182 Query: 183 EAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223 + E+ +E +I +LRKKL L + + + R LGY ++ + Sbjct: 183 DVSPES-IEIYIHRLRKKL---LASNVQITTLRGLGYVLECS 220 >gi|251795531|ref|YP_003010262.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543157|gb|ACT00176.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 239 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 12/167 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 L R+ + + P+I ++ + + + G DD + KP E+LARV+A+ RR Sbjct: 65 LTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQQD 124 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ S G + ++ + + + GE PL +E +L YL+ G + + + Sbjct: 125 DSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDLM 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 + ++G FD + V+ H+S LRKKL +LG ++S R +GY + Sbjct: 185 NVVWG-FDYIGGQRTVDVHVSSLRKKL--ELGQSVQIESIRGVGYKL 228 >gi|116253935|ref|YP_769773.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115258583|emb|CAK09687.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 240 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 21/230 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D + L G S + + + D+ ++A L GE Sbjct: 9 ILIVEDDPPIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAML--PGEDGF 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLD---FFDSGVDDVVNKPIHHREILARVAAIYRR 118 + R +RA VP++ ++ +LQ +D + G DD V KP + RE+LAR+ +I RR Sbjct: 67 SICRRLRAACSVPILMLT---ALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRR 123 Query: 119 LKVSNNRAET-GPIRVFSDGR-DP------EVQGEVFPLPRRERRILEYLMANRGKRVAK 170 ++++ E GP+ +FS R DP + G + E IL N K + + Sbjct: 124 ASYAHHQEEALGPM-MFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218 Q+ S + VE + +++HIS++R+K+ L DP + + R GY Sbjct: 183 EQLLSMTHAGSAGPVERS-IDAHISRVRQKIEPNLK-DPTFIKTVRLGGY 230 >gi|32469244|dbj|BAC79018.1| repressor-response regulator [Streptomyces sp. AM-7161] Length = 226 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 77/153 (50%), Gaps = 9/153 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 +E+ R +RA P+I + + + +G DD + +P RE++AR+ A+ RR+ Sbjct: 58 IEVCRRMRAAGDTPIISFAGESAELDRILGLQAGSDDCLERPYSFRELMARIDAVMRRVG 117 Query: 120 -KVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ R T G + + S+ R+ + G PL R+E +L YL + G V++ ++ Sbjct: 118 ARIGGQRRPTLSRGGLSLDSESREVVLDGRPIPLTRKEFDLLHYLASRPGVVVSRQRLMI 177 Query: 176 AIYG----LFDEAVEENVVESHISKLRKKLRNK 204 ++G + A +++H+S +R KLR Sbjct: 178 DVWGHPADVGLSAQASRTIDTHVSSMRSKLRES 210 >gi|255326451|ref|ZP_05367533.1| DNA-binding response regulator PrrA [Rothia mucilaginosa ATCC 25296] gi|255296491|gb|EET75826.1| DNA-binding response regulator PrrA [Rothia mucilaginosa ATCC 25296] Length = 247 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 85/162 (52%), Gaps = 7/162 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L RI + + +VP + ++ S+ ++ +G DD V KP E++ R+ + +R V+ Sbjct: 85 LSRIRKFYPEVPCLFLTAKDSVDNRIEGLAAGADDYVTKPFSMEEVMIRLHRLVQRSGVA 144 Query: 123 N-NRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + AE G + + D R+ GE L + +L YLM N + V+K+QI ++ Sbjct: 145 AIDDAELVVGDLVLNQDTREVTRGGEQINLTATQFDLLRYLMENAKRVVSKSQILDNVWN 204 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +D + N+VE +IS LRKK+ +G +P + + R GY + Sbjct: 205 -YDFGGQANIVELYISYLRKKI--DVGREPMIHTVRGAGYVL 243 >gi|169832040|ref|YP_001718022.1| two component transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169638884|gb|ACA60390.1| two component transcriptional regulator, winged helix family [Candidatus Desulforudis audaxviator MP104C] Length = 227 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 87/166 (52%), Gaps = 15/166 (9%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR + VP+I +S + + G DD V KP RE++ARV A+ RR SN Sbjct: 67 REIRRQTAVPIIMLSAKGEEYDRVLGLELGADDYVTKPFSPRELVARVKAVLRR---SNA 123 Query: 125 RAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFS 175 A TG + + ++ R EV+G+ L +E +L +L A+R +RV ++ Q+ + Sbjct: 124 PAGTGAGPALRYPGLTIDTEARRVEVEGQPIALTPKEFELLAFL-ASRPRRVFSREQLLA 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ ++ + V++HI +LR+KLR G + + + LGY + Sbjct: 183 GVWD-YEYPGDTRTVDTHIKRLREKLRGT-GRNYLKTVWGLGYKFE 226 >gi|254253753|ref|ZP_04947070.1| Response regulator [Burkholderia dolosa AUO158] gi|124898398|gb|EAY70241.1| Response regulator [Burkholderia dolosa AUO158] Length = 224 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 16/195 (8%) Query: 36 EWLQSSAREDVSAIEAF--------LIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQT 86 EW++ A S I+AF L G L++ R +RA H +VP++ ++ + T Sbjct: 28 EWVRDGAAGHAS-IDAFEYTAVLLDLGLPGMSGLDVLRAVRASHKEVPILILTARDDVDT 86 Query: 87 TLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGE 145 + D G DD + KP RE+LARV A+ RR + +R + + D R +G Sbjct: 87 RVQGLDLGADDYIAKPFQVRELLARVRAVMRRKAGYAASRLGDDSLCLDLDKRTLNCRGV 146 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 PL RE ++ + G +++ Q+ +YG + +E N ++ I +RK K Sbjct: 147 ELPLTSREFALMLAFLERPGTILSREQLEEKLYG-WGREIESNAIDVLIYSIRK----KF 201 Query: 206 GFDPVDSKRFLGYSI 220 G + + R +G+++ Sbjct: 202 GQSVIRNVRGIGWTV 216 >gi|330448429|ref|ZP_08312077.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492620|dbj|GAA06574.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 219 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 10/153 (6%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 P++ +S L +D ++G DD + KP E++ARV A RR N Sbjct: 72 NCPVVILSARNELTQRVDGLNAGADDYLTKPFQMVELVARVRAQLRR-STGNASPVIQAG 130 Query: 132 RVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 + D R +V QG++ L E ++L YLM N K +++T++ IY FD + N Sbjct: 131 DLSLDTRTSKVTWQGQLVDLTALEFKVLSYLMHNTDKVISRTELVEHIYKQDFDR--DSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E I ++R+ K+G D + + R LGY I+ Sbjct: 189 TIEVFIGRIRR----KIGNDVIKTVRGLGYRIN 217 >gi|308234693|ref|ZP_07665430.1| response regulator receiver domain protein [Gardnerella vaginalis ATCC 14018] Length = 246 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 20/172 (11%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI + VP++ ++ Q + G DD V KP E++AR+ AI RR + + Sbjct: 71 RIRQNGVAVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TQD 127 Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E P+ + D D G L E ++L YLM N G+ ++K+QI + ++ Sbjct: 128 PDEDTPVVRVADLEINEDSHDVSRSGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVW 187 Query: 179 GLFDEAVEENVVESHISKLRKK-----LRNKLG-----FDPVDSKRFLGYSI 220 +D + +VES+IS LRKK ++N+ G +++KR +GY I Sbjct: 188 Q-YDWGGDAAIVESYISYLRKKIDGIEIKNEDGSLKKVVPLIETKRGIGYMI 238 >gi|295394476|ref|ZP_06804699.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972655|gb|EFG48507.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 227 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 72/143 (50%), Gaps = 13/143 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR SQVP+I ++ Q+ ++ D G DD V KP E+LAR+ A RR V A Sbjct: 65 IRGWSQVPIIVVTARHETQSKIEALDRGADDYVTKPFALGELLARLRANLRR--VPQETA 122 Query: 127 ETGPIRVFSDGRDP--------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E P+ V SDGR V GE L E +I+ YL + + V + ++ + ++ Sbjct: 123 E--PVVVTSDGRLSIDLARNIVAVSGEQVSLTPHEWKIVGYLARHPNRLVRREELLTHVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G E E N ++S++R+KL Sbjct: 181 GKGYEK-ESNYARVYMSQIRQKL 202 >gi|255523352|ref|ZP_05390322.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188286|ref|ZP_06856678.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255513006|gb|EET89276.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047412|gb|EFG86854.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 225 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 105/222 (47%), Gaps = 13/222 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS----SAREDVSAIEAFLIGKG 57 +++DD L++ D + EG+ +LE E+ ++ S+ +D+ + ++ Sbjct: 6 ILVVDDEPLIRK-----LVTDFLKREGYITLEAEDGRKALDVFSSEKDIDLVILDVMLPE 60 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 + R IR S P+I ++ L FD G D+ + KP ++ARV A+ R Sbjct: 61 YDGWTVCREIRKKSSTPIIMLTARGEEFDELFGFDIGADEYIAKPFSPNILVARVNAVLR 120 Query: 118 R-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + V + E + + + + + L +E +L YL N GK V++ QI Sbjct: 121 RAVPVDSKTKEFNGLIIDENAHEVNIDDCTIDLSPKEYDLLMYLTENYGKAVSREQILDK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G +D + V++HI++LR KL +K + V + R GY Sbjct: 181 VWG-YDYYGDLRTVDTHINRLRIKLDSKSNY--VQTVRGYGY 219 >gi|220935053|ref|YP_002513952.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996363|gb|ACL72965.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7] Length = 244 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 96/210 (45%), Gaps = 29/210 (13%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66 D +L GY L G EG L +S D+ ++ L K K E+ + Sbjct: 31 DISLRSQGYATLLA--GTGREGLT-------LLASKGADLVVLDLGLPDKDGK--EVLKE 79 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S+VP+I ++ + + D+G +D V KP E++AR+ A R L + A Sbjct: 80 LRRWSRVPVIVLTVRSGEEEKVALLDAGANDYVTKPFGVEELMARIRAFLRTL---GSGA 136 Query: 127 ETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E P V+ DG R+ V G+V L R+E +L L G+ + +TQI ++ Sbjct: 137 EEDP--VYDDGVVRIDLAQREVTVHGQVVTLSRKEFSLLSLLARQPGRLITQTQILREVW 194 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD 208 G EE+ ++ L KLRNKLG D Sbjct: 195 G---PTHEEDA--HYLRILVGKLRNKLGDD 219 >gi|154503273|ref|ZP_02040333.1| hypothetical protein RUMGNA_01097 [Ruminococcus gnavus ATCC 29149] gi|153796267|gb|EDN78687.1| hypothetical protein RUMGNA_01097 [Ruminococcus gnavus ATCC 29149] Length = 226 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 107/225 (47%), Gaps = 10/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D +++ I G+ +GF E ++++ A + I ++ GE Sbjct: 1 MIYCVEDDDNIRELVIYTLETTGLKAKGFA--EGTAFMEALAFDTPELILLDIMLPGEDG 58 Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LEL + ++ ++ +P+I ++ + + DSG DD V KP E+++R+ A+ R Sbjct: 59 LELLKKLKNSAKTKDIPVIMVTAKGAEYDKVIGLDSGADDYVTKPFGMMELVSRIKAVLR 118 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + V D + EV+ GE+ L +E +LE LM N+ + + Q+ Sbjct: 119 RSGRVQEQDMLSVNGVSVDVKKHEVKVAGEIVTLTLKEFELLERLMRNQNIVLTRDQLLE 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D E V+ H+ LR+KL K D + + R +GY I Sbjct: 179 DIWG-YDFDGETRTVDVHVRTLRQKLGEK--GDIIKTVRGVGYRI 220 >gi|21230181|ref|NP_636098.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21111717|gb|AAM40022.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 238 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 19/172 (11%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I ++ + D+G +D V KP +E++AR+ A+ R+ Sbjct: 71 EVLREIRQWSSVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQAGA 130 Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N E+ VF DG R+ + GE PL R+E +L L + G+ V + Q+ Sbjct: 131 GNTVEES----VFDDGRLHIHLGLREVTLDGEAVPLSRKEYALLALLFKHAGRVVTQPQL 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG------FDPVDSKRFLGYS 219 ++G E + + + + KLR+KL + +P RF+G + Sbjct: 187 LREVWGPTHEE-DTHYLRILVGKLRQKLHDDAAAPHYIVTEPGVGLRFIGVT 237 >gi|311105062|ref|YP_003977915.1| transcriptional regulator TctD 3 [Achromobacter xylosoxidans A8] gi|310759751|gb|ADP15200.1| transcriptional regulatory protein TctD 3 [Achromobacter xylosoxidans A8] Length = 229 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA +S +P++ ++ S++ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLRRLRARNSALPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRG 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + GR V + L RE +LE L+ G+ V+KTQ+ + Sbjct: 120 AGGGATMIKHGRLLFDQTGRVAMVDDQTLDLSAREVSLLEILLTRSGRMVSKTQLVDHLC 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E ++ +LRKKL G V + R LGY ++ Sbjct: 180 E-WGEEVSTNAIEVYVHRLRKKLEPS-GVKIV-TVRGLGYCLE 219 >gi|297531093|ref|YP_003672368.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297254345|gb|ADI27791.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 225 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 3/151 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG-- 129 + P++ ++ SL+ + D G DD + KP E+ AR+ A+ RR + Sbjct: 71 ETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQSPELKARLRALLRRSGALTTKQTIRYR 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I +F + V G+ L ++ +LEYL+ N+G + K QIF I+G FD ++ Sbjct: 131 GIELFGKEKGVVVDGQPLKLTSKQYELLEYLVHNQGVILTKEQIFDRIWG-FDSDTTISI 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 VE + +LRKKL + + R +GY + Sbjct: 190 VEVFVHQLRKKLEPFGYHADIQTVRGIGYML 220 >gi|257064074|ref|YP_003143746.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256791727|gb|ACV22397.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 225 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 16/141 (11%) Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDP 140 D FD+G DD + KP +LAR+ A+ RR LK S+ +T RV GR+ Sbjct: 89 DAFDTGADDFLRKPFSLVVLLARLRALVRRGGVAKGSVLKASDLMLDTRTKRVTRAGREI 148 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 E L RE +LE L+ N G + K + ++G + +ENVVE +IS LR+K Sbjct: 149 E-------LTPREFALLELLLMNAGNALPKQLLLERVWG-YAILADENVVEVYISYLRRK 200 Query: 201 LRNKLGFDPVDSKRFLGYSID 221 + + + R +GY ID Sbjct: 201 VDAPFDKKLIRTVRGVGYCID 221 >gi|229543409|ref|ZP_04432469.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229327829|gb|EEN93504.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 224 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 12/156 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR SQVP+I ++ + G DD ++KP +E+LAR+ A+ RR Sbjct: 62 EVCRQIRKMSQVPVIMLTARTDKPDVVKGLKIGADDYISKPFDEKELLARIDAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +N+ + I DP Q + + +E +L + + + ++ Q+ ++ Sbjct: 119 -SNQNQNETIEKNGLKWDPVSFQVFYQNQPVSVTPKEFAMLGLFLQHPNQVFSREQLLTS 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 I+G ++ E+ ++SHI +R KLRN GF PVDS Sbjct: 178 IWG-YEVETEDRTIDSHIRNVRDKLRNA-GF-PVDS 210 >gi|220927161|ref|YP_002502463.1| two component transcriptional regulator PhoB, winged helix family [Methylobacterium nodulans ORS 2060] gi|219951768|gb|ACL62160.1| two component transcriptional regulator PhoB, winged helix family [Methylobacterium nodulans ORS 2060] Length = 234 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R IRA + +P+I ++ + +G DD + KP E+LARV A+ R Sbjct: 62 IELCRRIRARRETERLPIIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALLR 121 Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R K ++ + G I + +G L E ++LE+LM + G+ ++ Q+ Sbjct: 122 RAKPAHVAHLLVAGDIELDRVSHRVRREGRELHLGPTEFKLLEFLMQSPGRVFSREQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ HI +LRK + DP+ + R GYS D Sbjct: 182 GVWG-HDVYIDERTVDVHIGRLRKAINRPRRPDPIRTVRGSGYSFD 226 >gi|330818169|ref|YP_004361874.1| DNA-binding response regulator [Burkholderia gladioli BSR3] gi|327370562|gb|AEA61918.1| DNA-binding response regulator [Burkholderia gladioli BSR3] Length = 233 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 13/157 (8%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R H+ +P++ I+ ++ + D+G DD + KP E+ AR+ A+ RR + R+E Sbjct: 82 RGHA-LPVLIITARDAVSDRVKGLDAGADDYLVKPFDLDELGARMRALIRR---QSGRSE 137 Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G + + + G L RE +LE L+A G ++K+Q+ +YG + E Sbjct: 138 SVIRHGALTLDPASHQVTLDGAAVALSAREFALLEALLARPGAVLSKSQLEEKMYG-WGE 196 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N VE +I LRK KLG D + + R LGY + Sbjct: 197 EIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 229 >gi|297616303|ref|YP_003701462.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] gi|297144140|gb|ADI00897.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] Length = 228 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 5/143 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123 R IRA S P+I ++ + D G DD V KP E++ARV A+ RR ++N Sbjct: 66 REIRAMSNAPIIMLTAKGEESDRVLGLDLGADDYVCKPFSPIELVARVKAVLRRTSLANQ 125 Query: 124 --NRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 NR P + V D EV G L +E +L +L ++ GK ++ Q+ S ++ Sbjct: 126 DGNRVLFYPGLTVNYDSHLVEVDGRRVSLTPKEFELLWFLASHPGKVYSREQLLSYVWD- 184 Query: 181 FDEAVEENVVESHISKLRKKLRN 203 +D + V++HI +LR+KL + Sbjct: 185 YDYLGDPRTVDTHIKRLREKLES 207 >gi|117624105|ref|YP_853018.1| transcriptional regulatory protein YedW [Escherichia coli APEC O1] gi|301029610|ref|ZP_07192682.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1] gi|91072760|gb|ABE07641.1| putative 2-component transcriptional regulator yedW [Escherichia coli UTI89] gi|115513229|gb|ABJ01304.1| putative 2-component transcriptional regulator [Escherichia coli APEC O1] gi|294492861|gb|ADE91617.1| heavy metal response regulator [Escherichia coli IHE3034] gi|299877512|gb|EFI85723.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1] gi|307626558|gb|ADN70862.1| transcriptional regulatory protein YedW [Escherichia coli UM146] gi|323952458|gb|EGB48331.1| heavy metal response regulator [Escherichia coli H252] Length = 260 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLISTIRGMGYS 254 >gi|332652328|ref|ZP_08418073.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16] gi|332517474|gb|EGJ47077.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16] Length = 225 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 2/158 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSN 123 R+ AH P++ ++ + + D G DD + KP E++ARV A+ RR +V Sbjct: 65 RLRSAHISTPILMLTARDDISDKIGGLDCGADDYMTKPFDSGELMARVRALTRRQGEVLG 124 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + G + + R V L +E ++ LM N V+K + + I+GL E Sbjct: 125 DVLKVGDLSLECSSRLLRVGERSVRLGFKEFEVMRLLMVNSRAVVSKETLIAKIWGLDSE 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A E+N VE +IS LRKKL + + R +GY ++ Sbjct: 185 A-EDNNVEVYISFLRKKLAYLGSRIAISTVRKVGYYLE 221 >gi|291458575|ref|ZP_06597965.1| transcriptional activator protein Irlr [Oribacterium sp. oral taxon 078 str. F0262] gi|291419108|gb|EFE92827.1| transcriptional activator protein Irlr [Oribacterium sp. oral taxon 078 str. F0262] Length = 223 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 87/168 (51%), Gaps = 8/168 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +L+L R R + V +I ++ ++ + D G +D + KP H E+ AR+ ++ Sbjct: 59 GFTLLQLIR--RENKLVNVIMLTARTEIKDRVKGLDLGANDYLIKPFHFEELEARIRSLL 116 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR ++ + + + D R V +G+ L +E ILEYL+ N+G +++ ++ Sbjct: 117 RRKQLQEDTVLSAQ-GISYDMRSKTVTAEGKAIRLTAKELGILEYLLLNQGNYISQEELL 175 Query: 175 SAIY-GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ G +E N V H+S LR+KL+ LG + + ++ GY ID Sbjct: 176 EHVWDGDMNEF--SNTVRVHVSALRRKLKESLGKNIIRNEIGKGYIID 221 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300072766|gb|ADJ62165.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 5/163 (3%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA +S++P++ ++ S++ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRG 119 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+ GR + ++ L RE +LE L+ G+ V+K Q+ + Sbjct: 120 AGGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLC 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E ++ +LRKK+ ++G + + R LGY ++ Sbjct: 180 E-WGEEVSNNAIEVYVHRLRKKI--EVGGVRIATVRGLGYCLE 219 >gi|307945464|ref|ZP_07660800.1| transcriptional regulatory protein CusR [Roseibium sp. TrichSKD4] gi|307771337|gb|EFO30562.1| transcriptional regulatory protein CusR [Roseibium sp. TrichSKD4] Length = 228 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 12/159 (7%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A P++ +S + + +G DD + KP E+ ARV A+ RR K S + T Sbjct: 70 AGDHTPVLILSALGQVDDRVKGLKAGGDDYLPKPYAFTELQARVEALARRPKASGDLETT 129 Query: 129 GPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181 + R+ R +V+ PL RE R+LEYLM + G+ V +T + ++ F Sbjct: 130 YQVGDLVLDRLAHSCRRGDVE---IPLQPREFRLLEYLMQHAGQVVTRTMLLENVWEYHF 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + NV++ HIS+LR K+ + + R GYSI Sbjct: 187 DP--QTNVIDVHISRLRAKIDKDFDKPLLQTIRGAGYSI 223 >gi|226349426|ref|YP_002776540.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] gi|226245341|dbj|BAH55688.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] Length = 224 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 98/209 (46%), Gaps = 18/209 (8%) Query: 23 GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGI 78 G++ EGF + E + L+ + D + ++ G ++ R +RA P++ + Sbjct: 19 GLTAEGFVVDVAREGCDGLEQAVTGDFDVVVLDIMLPGMHGYQILRELRARQVWTPVLML 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNRAETGPI 131 S D FD G DD + KP ++AR+ A+ RR + + N A Sbjct: 79 SAKDGEYDQADAFDLGADDYLTKPFSFVILVARLRALLRRGAPERPAILTAGNLALDPAR 138 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 R S G D V L RE +LE+L+ N+G V+K +I +++ + ++NVVE Sbjct: 139 RRVSRGED------VLALTPREYGVLEFLLRNKGDVVSKAEILRSVWDSNYDG-DDNVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +I LR+K+ G +++ R +GY + Sbjct: 192 VYIGYLRRKIDAPFGMATIETVRGVGYRL 220 >gi|91789521|ref|YP_550473.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91698746|gb|ABE45575.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 219 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA + P++ + ++ + D+G DD V KP E+LAR+ A+ RR Sbjct: 60 LEVLRSLRARRNATPVLVATARDAIGDRIAGLDAGADDYVVKPYDIDELLARIRALIRR- 118 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S R E + + R+ V G+ L RE +LE L+A G +++ Q+ Sbjct: 119 --SAGRGEPVFEHKGVSLNPATREASVHGQPVSLSAREWAVLEALLARPGVVLSRAQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ DE V N VE +I +RKKL N+L + + R LGY + Sbjct: 177 KLFSWKDE-VSSNAVEVYIHGVRKKLGNEL----IQTVRGLGYLV 216 >gi|331653384|ref|ZP_08354389.1| putative 2-component transcriptional regulator YedW [Escherichia coli M718] gi|331049482|gb|EGI21554.1| putative 2-component transcriptional regulator YedW [Escherichia coli M718] Length = 260 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLITTIRGMGYS 254 >gi|170719341|ref|YP_001747029.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169757344|gb|ACA70660.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 229 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 103/213 (48%), Gaps = 24/213 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 +++DD A +++ IA+ + + G++ LE E Q+ A + D+ ++ L Sbjct: 6 ILIVDDEAPIRE-MIAV----ALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--P 58 Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ +P+I ++ + + G DD + KP RE++AR+ Sbjct: 59 GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR S++ A PI V DP + G+ + E R+L++ M ++ + Sbjct: 119 AVLRRAGPSDSEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ ++G + VEE V+ HI +LRK L Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207 >gi|258510266|ref|YP_003183700.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|50830978|emb|CAG29816.1| putative response regulator transcription factor kdpE [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476992|gb|ACV57311.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 232 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 5/205 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V+ D+RA++K IAL G LE +S E + S+ R D++ I+ L + Sbjct: 6 ILVVDDERAILKLMQIALKGHGYEVLEA-SSGEEALVVASTKRPDLAVIDWGL--PDMEG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R SQ+P+I ++ + + + D+G DD V KP E+LAR+ R Sbjct: 63 IEVLRRLREWSQMPVIMLTVRDAEEDKIAALDAGADDYVVKPFGMGELLARIRVALRHAA 122 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + R E+ GE L E +L+ L N GK V + Q+ ++ Sbjct: 123 RVQDEPVIEAAGLAIHLAERRVELNGEAVKLTPIEYDLLKALAQNAGKVVTQRQLLRHVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203 G D + + +I LRKKL + Sbjct: 183 GDVDPDNAAHYLRVYIGHLRKKLED 207 >gi|330684103|gb|EGG95854.1| putative response regulator protein GraR [Staphylococcus epidermidis VCU121] Length = 221 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 +R S VP+I IS + G DD + KP + +A+V A+ RR L VSN Sbjct: 66 MRKISNVPIIFISSRTDNMDQIMAIQMGGDDFIEKPFNLSLTVAKVQALLRRTYDLAVSN 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N ++ D Q +V L E +I++ L N GK V +T + + + Sbjct: 126 NELNVKGCKLIVDEAKLMFQDDVTQLSLTELQIVKLLFQNEGKFVNRTALIEKCWE-SEN 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL D +++K+ +GY + Sbjct: 185 YIDDNTLAVNMTRLRKKLSQIGLTDFIETKKNVGYRV 221 >gi|319934827|ref|ZP_08009272.1| regulatory protein VanR [Coprobacillus sp. 29_1] gi|319810204|gb|EFW06566.1| regulatory protein VanR [Coprobacillus sp. 29_1] Length = 223 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 27/221 (12%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPR 65 + L+K+GY + + G ++ L A+ D+ ++ L G GE+VL P+ Sbjct: 20 EETLIKEGY-----ETSRAYSGTEAI----LLLEHAKPDLVLLDLMLPGLNGEEVL--PK 68 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 I +P+I IS + ++ +G D + KP H +E+LAR+A R+ Sbjct: 69 I----KNIPVIIISAKIDIDNKVNLLLNGAVDYMTKPFHKKELLARIAVQLRKPIF---- 120 Query: 126 AETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E+ PI F + + L R E IL+ LM N + + K+ + I Sbjct: 121 LESSPILTFEELNLHHNTHTVTIHNTEIKLTRTEYAILKLLMQNPSQIITKSLLLERISD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E + ++ HIS LRKKLR G D +++ +G+ + Sbjct: 181 DTPDCTESS-LKMHISNLRKKLREVTGKDYIEAVWGIGFKL 220 >gi|298241430|ref|ZP_06965237.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554484|gb|EFH88348.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 234 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 5/179 (2%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQT 86 E F++ EE L+ R I L G LE+ R +R S +P+I +S + + Sbjct: 31 EVFSASSGEEALEEVVRHRPDLILLDLGLPGISGLEVCRKVREQSNLPIIVLSVKDTERD 90 Query: 87 TLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNNRA-ETGPIRVFSDGRDPEV 142 + D G DD V+KP E+LARV R ++KV + GP+RV R +V Sbjct: 91 KVQALDLGADDYVSKPFGLNEVLARVRVALRHSAQVKVGTEPVFQAGPLRVDFSQRLVQV 150 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +G+ L E +L+ L+ N GK + + + S ++G E + + +I +LR+K+ Sbjct: 151 EGKEVKLTPTEYDLLKALIRNSGKIMTRQMLLSQVWGT-GYGTEAHYLHVYIGQLRRKI 208 >gi|298290576|ref|YP_003692515.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296927087|gb|ADH87896.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 224 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 3/163 (1%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+L R RA +P++ ++ +L + + G DD V KP H E++AR+ A+ RR Sbjct: 60 LDLLRRQRARGLAIPVLILTARDNLADRVRGLEQGGDDYVLKPFHMDELVARLRALLRRP 119 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + + R V PL RRE +LE M G+ + + I A+Y Sbjct: 120 NQALGANIIVGNVALNTADRSVTVSHAPLPLSRRELGLLELFMRRSGRVLTRECIERALY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD+ +E N VE + +LR+KL + + R +GY ++ Sbjct: 180 S-FDDELESNAVEVLLHRLRRKLTGAGASPEIHTLRGIGYLLE 221 >gi|255324243|ref|ZP_05365365.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] gi|255298759|gb|EET78054.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] Length = 235 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 27/209 (12%) Query: 10 LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+G+ + DG +LE F A D+ + L+ G E+ + +R Sbjct: 21 LRKEGFEPIIAHDGPTALEKF------------AANDIDIVLLDLMLPGMSGTEVCKQLR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 S VP+I ++ S + + G DD V KP RE++AR+ A+ RR S A+T Sbjct: 69 TTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHDSGAGADT 128 Query: 129 -------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 G +++ + V E +P +E +LEYL+ N G+ + + Q+ Sbjct: 129 EAEEEVAEQILEGGRVKMDVERHTVTVADEPVSMPLKEFDLLEYLLRNAGRVLTRGQLID 188 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK 204 I+G D + ++ H+ +LR K+ + Sbjct: 189 RIWG-ADYVGDTKTLDVHVKRLRSKIEEQ 216 >gi|229043138|ref|ZP_04190863.1| Two-component response regulator [Bacillus cereus AH676] gi|229144003|ref|ZP_04272419.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228639400|gb|EEK95814.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228726197|gb|EEL77429.1| Two-component response regulator [Bacillus cereus AH676] Length = 218 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 58 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 117 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEAGGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199 >gi|162138420|ref|YP_541172.2| transcriptional regulatory protein YedW [Escherichia coli UTI89] gi|218558823|ref|YP_002391736.1| transcriptional regulatory protein YedW [Escherichia coli S88] gi|218365592|emb|CAR03319.1| DNA-binding response regulator in two-component system with YedV [Escherichia coli S88] gi|309702255|emb|CBJ01572.1| two-component response regulator [Escherichia coli ETEC H10407] gi|323961816|gb|EGB57416.1| heavy metal response regulator [Escherichia coli H489] Length = 223 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 42 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 101 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 102 FSFSELLARVRAQLRQHHALNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 161 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 162 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLISTIRGMGYS 217 >gi|15803567|ref|NP_289600.1| DNA-binding transcriptional regulator QseB [Escherichia coli O157:H7 EDL933] gi|12517595|gb|AAG58159.1|AE005532_3 quorum sensing Escherichia coli regulator B [Escherichia coli O157:H7 str. EDL933] Length = 219 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R Q P++ ++ +L+ + G DD + KP E+ AR+ A+ RR Sbjct: 63 L---REWREKGQREPVLILTARDALEERVXGLRLGADDYLCKPFALIEVAARLEALMRRT 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + R + GE L +E +LE LM N G+ + + I +Y Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|325694299|gb|EGD36213.1| DNA-binding response regulator [Streptococcus sanguinis SK150] Length = 224 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K + N G + Sbjct: 73 TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLSYGDV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V G+ L +E +L Y + N+ + KTQIF ++G FD +VVE Sbjct: 133 TVNLSTNSTLKAGKDVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTVSVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + R +GY Sbjct: 192 VYVSKIRKKLKGTTFAKNLHTLRSVGY 218 >gi|295676683|ref|YP_003605207.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295436526|gb|ADG15696.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 219 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 6/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L R+ A + VP++ ++ ++ + ++G DD + KP E++AR A+ RR + Sbjct: 63 LKRMRDAGNDVPVLVLTAKGTVVDRVGGLEAGADDYLGKPFDLTELVARCRALLRRAQGR 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + + V + ++ PL RE IL L+ N G +++++ ++YG + Sbjct: 123 SIDLIRYQNLTVNPAAQTVQIDEARVPLTSREWAILLQLLTNLGIPQSRSRLEESLYG-W 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E +E N +E H+S LRK KLG + + + R +GY ++ Sbjct: 182 QEEIESNAIEVHVSNLRK----KLGANLIKTVRNIGYVME 217 >gi|229163835|ref|ZP_04291778.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228619655|gb|EEK76538.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 231 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 65 RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S E +++F + + E L ++E + E L++ + ++ + +A++ Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGAEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 DE+ VEEN + +I++LRKK N+LG + +++ R LGY Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223 >gi|169349478|ref|ZP_02866416.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552] gi|169293553|gb|EDS75686.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552] Length = 227 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 111/226 (49%), Gaps = 21/226 (9%) Query: 1 MFVLIDDR--------ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52 +FV+ DD ALV +GY + D+ + ++LE + S AI Sbjct: 5 IFVIEDDENIREIINLALVSNGYEVVQFDNAI-----DALELMKKETPSL-----AIFDL 54 Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 ++ K + + +I ++++P++ +S ++ DSG DD + KP E+ ARV Sbjct: 55 MLPKMSGIDAIKKIRETNNELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARV 114 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ RR V+++ +T + V R ++ G+ L +E ++L YLM N+ + V + + Sbjct: 115 RSLLRR-HVTSDVIKTKHLVVDKQTRMIKMDGKKLELTNKEYQLLVYLMDNKHRVVEREE 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + I+G +D E ++ HI LR KL N G + + R +GY Sbjct: 174 LLNEIWG-YDFIGESRALDVHIRALRSKL-NDDGHKYIKTIRSVGY 217 >gi|326790669|ref|YP_004308490.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541433|gb|ADZ83292.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 221 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 3/154 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA S +P+I ++ S L + G DD V KP + + +LAR+A++ RR + Sbjct: 67 IRAASSIPIIVVTSRDSEMDELMSMNLGADDFVTKPYNIQILLARIASVLRRTQRHQELK 126 Query: 127 ETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + D +V + + L + E RIL LM ++ V++ +I + ++ DE Sbjct: 127 AITYKGLTLDLSQSKVSFENQEVELTKNELRILHLLMKHQTTIVSRDEIMNELWQ-SDEF 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V++N + +I++LR+KL + D + +KR GY Sbjct: 186 VDDNTLTVNINRLRRKLEDVGANDYIMTKRGQGY 219 >gi|196228357|ref|ZP_03127224.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196227760|gb|EDY22263.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 226 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 81/162 (50%), Gaps = 6/162 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123 R+ + ++ VP++ ++ +L + F+SG DD + KP E+L R+ A+ RR V Sbjct: 65 RVRKQNTDVPIVVLTARDALSDKVANFESGADDYLTKPFAFAELLVRIKALLRRGAVPRA 124 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N + + + G+ L +E +LEYL N G+ +++T I ++ D+ Sbjct: 125 NVIQIADLEIDRLAHQVRRGGQSIKLTAKEYGLLEYLATNAGRVLSRTMIVEHVW---DQ 181 Query: 184 AVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + E N+V+ ++ +LR K+ + + R +GY I+ N Sbjct: 182 SFEGLTNIVDVYVRQLRAKIDEPFDRKLIHTVRSVGYVINEN 223 >gi|148556617|ref|YP_001264199.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148501807|gb|ABQ70061.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 232 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 3/155 (1%) Query: 68 RAHSQVPLIGI-SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R + Q+P I + +L+ + D+G DD V KP+ E+ AR+ A+ RR V Sbjct: 74 RKYQQMPPAIIQTARGALEDRVTGLDAGADDYVVKPVEVDELAARIRALLRRPGVRTQPV 133 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E G + + R + L RRE +LE LM G V + I +A+Y F++ V Sbjct: 134 IEVGTLCFDTASRSASIADRNVDLSRREADLLELLMRRAGTVVHRDVIENALYS-FNDPV 192 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N VE+ +S+LR+KL + + R +GY + Sbjct: 193 TPNAVEAAVSRLRRKLDEAAMPGTLHTVRGVGYML 227 >gi|118586833|ref|ZP_01544268.1| two-component system regulator [Oenococcus oeni ATCC BAA-1163] gi|290889967|ref|ZP_06553053.1| hypothetical protein AWRIB429_0443 [Oenococcus oeni AWRIB429] gi|118432753|gb|EAV39484.1| two-component system regulator [Oenococcus oeni ATCC BAA-1163] gi|290480409|gb|EFD89047.1| hypothetical protein AWRIB429_0443 [Oenococcus oeni AWRIB429] Length = 228 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 101/214 (47%), Gaps = 24/214 (11%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74 YI L DG G + E Q+S R +V ++ +++ K + + L RI + +SQV Sbjct: 28 YIVLTASDGEM--GLSVFE-----QNSNRINVVLLD-WMLPKRDGLEVLRRIRKLNSQVS 79 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRA 126 +I ++ + + DSG DD + KP E+LAR+ R +VSN Sbjct: 80 IILMTAKSDIGDKVAALDSGADDYITKPFEIEELLARLRVTIRHQNKPRPKLYQVSNLVL 139 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + RV D G+V L +RE ++L YL+ N GK + + + ++G+ D + Sbjct: 140 DLDAHRVTRD-------GQVIDLTQREFQLLTYLIENAGKTLTRDDLLDNVWGV-DFNGQ 191 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N + +I LR+K+ + + + R +GY + Sbjct: 192 YNTADVYIRYLRQKIDDHFYPKLIHTVRSVGYVL 225 >gi|29375510|ref|NP_814664.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|227555037|ref|ZP_03985084.1| response regulator [Enterococcus faecalis HH22] gi|255973994|ref|ZP_05424580.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256960052|ref|ZP_05564223.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|257418520|ref|ZP_05595514.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|293383804|ref|ZP_06629711.1| DNA-binding response regulator [Enterococcus faecalis R712] gi|293388720|ref|ZP_06633213.1| DNA-binding response regulator [Enterococcus faecalis S613] gi|300860072|ref|ZP_07106160.1| putative Response regulator protein GraR [Enterococcus faecalis TUSoD Ef11] gi|307275343|ref|ZP_07556486.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307278379|ref|ZP_07559454.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|312901532|ref|ZP_07760805.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312906980|ref|ZP_07765976.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312978762|ref|ZP_07790489.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|29342970|gb|AAO80734.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|44933475|gb|AAS49391.1| response regulator [Enterococcus faecalis] gi|227175824|gb|EEI56796.1| response regulator [Enterococcus faecalis HH22] gi|255966866|gb|EET97488.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256950548|gb|EEU67180.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|257160348|gb|EEU90308.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|291078880|gb|EFE16244.1| DNA-binding response regulator [Enterococcus faecalis R712] gi|291081877|gb|EFE18840.1| DNA-binding response regulator [Enterococcus faecalis S613] gi|300850890|gb|EFK78639.1| putative Response regulator protein GraR [Enterococcus faecalis TUSoD Ef11] gi|306504885|gb|EFM74080.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306507977|gb|EFM77104.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|310626965|gb|EFQ10248.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|311288469|gb|EFQ67025.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|311291327|gb|EFQ69883.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315145787|gb|EFT89803.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315148083|gb|EFT92099.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315163015|gb|EFU07032.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315167938|gb|EFU11955.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315574161|gb|EFU86352.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315581696|gb|EFU93887.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] Length = 224 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 13/162 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I IS + + + G DD V KP ++A++ A+ RR S N + Sbjct: 67 IREVSKVPIIFISSRSTNMDMIMAMNMGADDFVTKPFQIDVLIAKINALLRR---SYNYS 123 Query: 127 ETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +T I + D E++GE+ L + E R+L LM GK + + ++ A++ Sbjct: 124 DTDSEVLSHNGITLNVDNGRMEIRGEMIDLSKNEYRLLYLLMKKHGKILTREKLLRALWD 183 Query: 180 LFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE V++N + +I++LRKK+ +++K +GY + Sbjct: 184 --DERFVDDNTLTVNINRLRKKIEQAGIAGYIETKVGVGYMV 223 >gi|27376207|ref|NP_767736.1| phosphate regulon, two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|2769532|emb|CAA11074.1| phosphate regulatory protein [Bradyrhizobium japonicum] gi|27349347|dbj|BAC46361.1| phosphate regulon, two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 235 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 10/168 (5%) Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R Q+P+I ++ + +G DD + KP E+LARV + R Sbjct: 62 IELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121 Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R S R T G I + D R G L E R+LE+ + + G+ ++ Q+ Sbjct: 122 R--ASPERLATVLAYGDIELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 180 LDSVWG-RDIYIDERTVDVHIGRLRKLLNLGREQDPIRTVRGAGYALD 226 >gi|74313564|ref|YP_311983.1| DNA-binding transcriptional regulator QseB [Shigella sonnei Ss046] gi|91212442|ref|YP_542428.1| DNA-binding transcriptional regulator QseB [Escherichia coli UTI89] gi|110643266|ref|YP_670996.1| DNA-binding transcriptional regulator QseB [Escherichia coli 536] gi|117625331|ref|YP_854614.1| DNA-binding transcriptional regulator QseB [Escherichia coli APEC O1] gi|170018721|ref|YP_001723675.1| DNA-binding transcriptional regulator QseB [Escherichia coli ATCC 8739] gi|170683979|ref|YP_001745293.1| DNA-binding transcriptional regulator QseB [Escherichia coli SMS-3-5] gi|188495719|ref|ZP_03002989.1| QseB [Escherichia coli 53638] gi|191172517|ref|ZP_03034057.1| transcriptional regulatory protein QseB [Escherichia coli F11] gi|194431717|ref|ZP_03064008.1| transcriptional regulatory protein QseB [Shigella dysenteriae 1012] gi|194436837|ref|ZP_03068937.1| transcriptional regulatory protein QseB [Escherichia coli 101-1] gi|218560102|ref|YP_002393015.1| DNA-binding transcriptional regulator QseB [Escherichia coli S88] gi|218691322|ref|YP_002399534.1| DNA-binding transcriptional regulator QseB [Escherichia coli ED1a] gi|218701797|ref|YP_002409426.1| DNA-binding transcriptional regulator QseB [Escherichia coli IAI39] gi|218706652|ref|YP_002414171.1| DNA-binding transcriptional regulator QseB [Escherichia coli UMN026] gi|237706225|ref|ZP_04536706.1| transcriptional regulatory protein QseB [Escherichia sp. 3_2_53FAA] gi|253772137|ref|YP_003034968.1| DNA-binding transcriptional regulator QseB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162974|ref|YP_003046082.1| DNA-binding transcriptional regulator QseB [Escherichia coli B str. REL606] gi|256024393|ref|ZP_05438258.1| DNA-binding transcriptional regulator QseB [Escherichia sp. 4_1_40B] gi|293406640|ref|ZP_06650566.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1412] gi|293412399|ref|ZP_06655122.1| transcriptional regulatory protein qseB [Escherichia coli B354] gi|298382380|ref|ZP_06991977.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1302] gi|300901405|ref|ZP_07119491.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300916867|ref|ZP_07133570.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300931911|ref|ZP_07147208.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300937501|ref|ZP_07152324.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300950767|ref|ZP_07164654.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300958409|ref|ZP_07170549.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300993285|ref|ZP_07180322.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|301017281|ref|ZP_07182045.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|301020011|ref|ZP_07184143.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|301325626|ref|ZP_07219092.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|301643606|ref|ZP_07243647.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|306816631|ref|ZP_07450763.1| DNA-binding transcriptional regulator QseB [Escherichia coli NC101] gi|307139714|ref|ZP_07499070.1| DNA-binding transcriptional regulator QseB [Escherichia coli H736] gi|312972713|ref|ZP_07786886.1| transcriptional regulatory protein qseB [Escherichia coli 1827-70] gi|331643725|ref|ZP_08344856.1| transcriptional regulatory protein QseB [Escherichia coli H736] gi|331648819|ref|ZP_08349907.1| transcriptional regulatory protein QseB [Escherichia coli M605] gi|331659309|ref|ZP_08360251.1| transcriptional regulatory protein QseB [Escherichia coli TA206] gi|331664635|ref|ZP_08365541.1| transcriptional regulatory protein QseB [Escherichia coli TA143] gi|73857041|gb|AAZ89748.1| quorum sensing regulator B [Shigella sonnei Ss046] gi|91074016|gb|ABE08897.1| transcriptional Regulatory protein QseB [Escherichia coli UTI89] gi|110344858|gb|ABG71095.1| probable transcriptional regulatory protein YgiX [Escherichia coli 536] gi|115514455|gb|ABJ02530.1| transcriptional regulatory protein QseB [Escherichia coli APEC O1] gi|169753649|gb|ACA76348.1| two component transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|170521697|gb|ACB19875.1| transcriptional regulatory protein QseB [Escherichia coli SMS-3-5] gi|188490918|gb|EDU66021.1| QseB [Escherichia coli 53638] gi|190907185|gb|EDV66784.1| transcriptional regulatory protein QseB [Escherichia coli F11] gi|194420073|gb|EDX36151.1| transcriptional regulatory protein QseB [Shigella dysenteriae 1012] gi|194424319|gb|EDX40306.1| transcriptional regulatory protein QseB [Escherichia coli 101-1] gi|218366871|emb|CAR04641.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli S88] gi|218371783|emb|CAR19636.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli IAI39] gi|218428886|emb|CAR09831.2| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli ED1a] gi|218433749|emb|CAR14666.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli UMN026] gi|222034749|emb|CAP77491.1| Transcriptional regulatory protein qseB [Escherichia coli LF82] gi|226899265|gb|EEH85524.1| transcriptional regulatory protein QseB [Escherichia sp. 3_2_53FAA] gi|242378577|emb|CAQ33364.1| QseB transcriptional activator [Escherichia coli BL21(DE3)] gi|253323181|gb|ACT27783.1| two component transcriptional regulator, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974875|gb|ACT40546.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli B str. REL606] gi|253979031|gb|ACT44701.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia coli BL21(DE3)] gi|284923046|emb|CBG36139.1| two-component system response regulator [Escherichia coli 042] gi|291426646|gb|EFE99678.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1412] gi|291469170|gb|EFF11661.1| transcriptional regulatory protein qseB [Escherichia coli B354] gi|294493099|gb|ADE91855.1| transcriptional regulatory protein QseB [Escherichia coli IHE3034] gi|298277520|gb|EFI19036.1| transcriptional regulatory protein qseB [Escherichia coli FVEC1302] gi|299881968|gb|EFI90179.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|300305099|gb|EFJ59619.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300314918|gb|EFJ64702.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300355177|gb|EFJ71047.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300400254|gb|EFJ83792.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300415837|gb|EFJ99147.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300449937|gb|EFK13557.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300457459|gb|EFK20952.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300460334|gb|EFK23827.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300847598|gb|EFK75358.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|301077990|gb|EFK92796.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|305850196|gb|EFM50655.1| DNA-binding transcriptional regulator QseB [Escherichia coli NC101] gi|307625369|gb|ADN69673.1| DNA-binding transcriptional regulator QseB [Escherichia coli UM146] gi|309703456|emb|CBJ02796.1| two-component system response regulator [Escherichia coli ETEC H10407] gi|310332655|gb|EFP99868.1| transcriptional regulatory protein qseB [Escherichia coli 1827-70] gi|312947587|gb|ADR28414.1| DNA-binding transcriptional regulator QseB [Escherichia coli O83:H1 str. NRG 857C] gi|315288813|gb|EFU48211.1| response regulator receiver domain protein [Escherichia coli MS 110-3] gi|315297717|gb|EFU56994.1| response regulator receiver domain protein [Escherichia coli MS 16-3] gi|315617296|gb|EFU97904.1| transcriptional regulatory protein qseB [Escherichia coli 3431] gi|320176208|gb|EFW51272.1| Two-component system response regulator QseB [Shigella dysenteriae CDC 74-1112] gi|320180948|gb|EFW55869.1| Two-component system response regulator QseB [Shigella boydii ATCC 9905] gi|320195177|gb|EFW69806.1| Two-component system response regulator QseB [Escherichia coli WV_060327] gi|323188540|gb|EFZ73825.1| transcriptional regulatory protein qseB [Escherichia coli RN587/1] gi|323935972|gb|EGB32267.1| response regulator receiver domain-containing protein [Escherichia coli E1520] gi|323941875|gb|EGB38054.1| response regulator receiver domain-containing protein [Escherichia coli E482] gi|323951450|gb|EGB47325.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323957822|gb|EGB53536.1| response regulator receiver domain-containing protein [Escherichia coli H263] gi|323960927|gb|EGB56546.1| response regulator receiver domain-containing protein [Escherichia coli H489] gi|323966555|gb|EGB61988.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|323971849|gb|EGB67074.1| response regulator receiver domain-containing protein [Escherichia coli TA007] gi|323978902|gb|EGB73982.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] gi|324005372|gb|EGB74591.1| response regulator receiver domain protein [Escherichia coli MS 57-2] gi|324011978|gb|EGB81197.1| response regulator receiver domain protein [Escherichia coli MS 60-1] gi|327251811|gb|EGE63497.1| transcriptional regulatory protein qseB [Escherichia coli STEC_7v] gi|330909085|gb|EGH37599.1| two-component system response regulator QseB [Escherichia coli AA86] gi|331037196|gb|EGI09420.1| transcriptional regulatory protein QseB [Escherichia coli H736] gi|331042566|gb|EGI14708.1| transcriptional regulatory protein QseB [Escherichia coli M605] gi|331053891|gb|EGI25920.1| transcriptional regulatory protein QseB [Escherichia coli TA206] gi|331058566|gb|EGI30547.1| transcriptional regulatory protein QseB [Escherichia coli TA143] gi|332344981|gb|AEE58315.1| transcriptional regulatory protein QseB [Escherichia coli UMNK88] Length = 219 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 L---REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + R + GE L +E +LE LM N G+ + + I +Y Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|312602770|ref|YP_004022615.1| transcriptional regulatory protein [Burkholderia rhizoxinica HKI 454] gi|306431573|emb|CBK52125.1| transcriptional regulatory protein [Burkholderia rhizoxinica HKI 454] gi|312170084|emb|CBW77096.1| transcriptional regulatory protein [Burkholderia rhizoxinica HKI 454] Length = 296 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 6/142 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R A + PLI I + + D+G DDVV PI RE+L RV RR V+ Sbjct: 66 RACYADRRAPLIVIGALEDRASIVHVLDAGADDVVLTPIDPRELLLRVHLAIRRFNVTRR 125 Query: 125 R-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E GP R+ + + G+ L RE I L ++ G+ V++ QI A++ Sbjct: 126 TDHAGVIECGPYRLDPNTCIVRINGDAVRLTPREFAIAWLLFSHYGEYVSRRQIAGAVWS 185 Query: 180 LFDEAVEENVVESHISKLRKKL 201 ++ V +E HI KLRKKL Sbjct: 186 SSEDIVGRT-LEQHIYKLRKKL 206 >gi|307689741|ref|ZP_07632187.1| hypothetical protein Ccel74_16399 [Clostridium cellulovorans 743B] Length = 205 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 80/155 (51%), Gaps = 2/155 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123 ++IR P+I +S + D G DD + KP +LA++ A+ RR N Sbjct: 49 KVIRKKLDTPVIIVSSRSEEGEQIRGIDLGADDYITKPFSMGILLAKINAVLRRANNQNE 108 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N E I++F + + +V+ + L + E ++L+ ++ K VA+ + ++ +E Sbjct: 109 NVIEVNGIKLFCESMELKVKDKAISLSKNEYKLLKIFFSSYEKVVAREDLLETLWD-DEE 167 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V++N + +I++L+K+L+ +++KR +GY Sbjct: 168 FVDDNTLTVNITRLKKRLKENGIQLTIETKRGVGY 202 >gi|262282637|ref|ZP_06060405.1| response regulator [Streptococcus sp. 2_1_36FAA] gi|262261928|gb|EEY80626.1| response regulator [Streptococcus sp. 2_1_36FAA] Length = 233 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 10/152 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S VP+I +S S + + G DD V KP +RE+ ARV AI RR + Sbjct: 61 LEVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSE 120 Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + +N G +++ D + GE L RE +L +L ++ G+ + + Sbjct: 121 FAVDTQESEKGSNELTVGELQILPDAFVAKKHGEELELTHREFELLYHLASHVGQVMTRE 180 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ I +LR+K+ + Sbjct: 181 HLLETVWG-YDYFGDVRTVDVTIRRLREKIED 211 >gi|302874199|ref|YP_003842832.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307689539|ref|ZP_07631985.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577056|gb|ADL51068.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 229 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 6/165 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R S +P+I ++ + D G DD V KP E+LAR+ +R Sbjct: 62 IEILRRLRESSDIPVIMLTAKDETMDKVMGLDMGADDYVTKPFEIEELLARIRVALKRKI 121 Query: 121 VSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 V + I++ + D E + E L ++E +L YL+ N+ K +++ +I Sbjct: 122 VVVKENTSNLIKIKNLSIDLEKYSVTFKSEDIELTKKEFDLLLYLVENKNKVLSRDKILE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD + NVV+ +I LR K+ +K + + R +GY + Sbjct: 182 TVWG-FDYFGDTNVVDVYIRYLRSKIDDKYKEKYIYTVRGVGYVV 225 >gi|157370255|ref|YP_001478244.1| DNA-binding transcriptional regulator PhoP [Serratia proteamaculans 568] gi|157322019|gb|ABV41116.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] Length = 223 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 3/167 (1%) Query: 57 GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 GE L L R RAH ++P++ ++ S Q + ++G DD V KP H E++AR+ A+ Sbjct: 56 GEDGLSLIRRWRAHQMKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQAL 115 Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR +++ P ++ R+ V + L E I+E L+ N GK V+K + Sbjct: 116 MRRNSGLASQVIVLPPFQIDLSRRELSVNEQQIKLTAFEYTIIETLIRNAGKVVSKDSLM 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +Y E E + ++ + +LRKK++ + + + + R GY D Sbjct: 176 LQLYP-DAELRESHTIDVLMGRLRKKVQAEYPQEVITTVRGQGYRFD 221 >gi|306825719|ref|ZP_07459058.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432080|gb|EFM35057.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 260 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR SQVP++ +S + + G DD + KP + +LA+V + RR Sbjct: 102 IRKISQVPIMFLSSRDQAMDIVMAINMGADDFITKPFDQQVLLAKVQGLLRRSYEFGRDE 161 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + + D QGEV L + E +IL L + G VA+ + ++ D Sbjct: 162 SLLEYAGVILNTKSMDLHYQGEVLSLTKNEFQILRILFEHAGNIVARDDLMRELWN-SDF 220 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +++K+ +GY + Sbjct: 221 FIDDNTLSVNVARLRKKLEEQGLAGFIETKKGIGYGL 257 >gi|227875752|ref|ZP_03993880.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|269976698|ref|ZP_06183674.1| subtilin biosynthesis regulatory protein SpaR [Mobiluncus mulieris 28-1] gi|306819028|ref|ZP_07452745.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|307700351|ref|ZP_07637391.1| putative subtilin biosynthesis regulatory protein SpaR [Mobiluncus mulieris FB024-16] gi|227843694|gb|EEJ53875.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|269935063|gb|EEZ91621.1| subtilin biosynthesis regulatory protein SpaR [Mobiluncus mulieris 28-1] gi|304648221|gb|EFM45529.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|307614562|gb|EFN93791.1| putative subtilin biosynthesis regulatory protein SpaR [Mobiluncus mulieris FB024-16] Length = 220 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 17/164 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +IR P++ ++ + + G DD + KP E+ A+V A R Sbjct: 62 LVELIRNRVDYPIVFLTAKVGESDAIQGLEIGADDYIRKPFSLGELRAKVKAHLR----- 116 Query: 123 NNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R + G I+VFS G + V + L E I E+L N G+ +K QI Sbjct: 117 --RDQRGRIQVFSLGSVRFDMGVHEVLVGNKAVNLTPTEYSICEFLALNHGQVFSKEQIH 174 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G ++EA E + H+S R KLR G DP+ +KR +GY Sbjct: 175 DEVFG-WNEAAGETSILMHLSNARGKLRQH-GIDPIKNKRGVGY 216 >gi|57234026|ref|YP_181946.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224474|gb|AAW39531.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] Length = 222 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 67/225 (29%), Positives = 104/225 (46%), Gaps = 30/225 (13%) Query: 7 DRALVKDGYIALFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 +RAL + G++ + DG S E F NS EF+ + D + IE + Sbjct: 17 ERALGEAGHVVEYACDGASGEYFAANS-EFDLLILDIGLPDKNGIE------------VC 63 Query: 65 RIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKV 121 R +RA V ++ ++ SL + + D+G DD + KP E+ AR+ A+ RR L+V Sbjct: 64 RKLRADGIVTSVLMLTARDSLDSKVKGLDAGADDYLCKPFACDELFARIRALQRRPPLRV 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ET I F + G+ L E +ILEY + N G + ++ + ++G Sbjct: 124 LPV-VETAGIS-FDNVSHRVCGGKTEIKLTAAEYKILEYFITNPGVLITRSMLEEHLWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD----PVDSKRFLGYSID 221 E V + I L KKLR KLG+D P+ + R GY +D Sbjct: 181 ----AESTSVSNTIDSLIKKLRQKLGWDAKSGPIKTLRGAGYRLD 221 >gi|228991507|ref|ZP_04151455.1| Uncharacterized sensory transduction protein ykoG [Bacillus pseudomycoides DSM 12442] gi|229008403|ref|ZP_04165865.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides Rock1-4] gi|228752861|gb|EEM02428.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides Rock1-4] gi|228768231|gb|EEM16846.1| Uncharacterized sensory transduction protein ykoG [Bacillus pseudomycoides DSM 12442] Length = 224 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 13/189 (6%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L+++ ++ I L+ G +E+ R +RA P+I ++ S+ + DSG DD Sbjct: 38 LEAAIEKNYDIILLDLMLPGLNGIEVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETGP--------IRVFSDGRDPEVQGEVFPL 149 + KP E+LAR+ I+RR + E+ P +++ + R E+ L Sbjct: 98 YLPKPFAIEELLARIRVIFRR----EQKEESKPTLLLAFKDLQLHVESRTLRKNDEIIEL 153 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L M N + + + + ++G +D VE N+V+ ++ LR KL + Sbjct: 154 TNKEFELLLMFMKNINRVLTRDILLEQVWG-YDAIVETNIVDVYVRYLRNKLHGVDKEEY 212 Query: 210 VDSKRFLGY 218 + + R GY Sbjct: 213 IQTVRGAGY 221 >gi|254520519|ref|ZP_05132575.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] gi|226914268|gb|EEH99469.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] Length = 228 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 4/144 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR S++P+I ++ + + G DD + KP +E+LARV A+ RR Sbjct: 65 IEVLKWIRKSSEIPVIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVMRRYN 124 Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E + + ++ + +G +P +E +L YL +N+ K + Q+ + Sbjct: 125 YDEKNTEIINYSDLVIDANSYNVVYKGVEIKMPPKEFELLHYLASNKNKVFTREQLLCEV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G +D + V+ HI +LR+K+ Sbjct: 185 WG-YDYPGDSRTVDVHIKRLREKI 207 >gi|170690183|ref|ZP_02881350.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170144618|gb|EDT12779.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 231 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 80/150 (53%), Gaps = 6/150 (4%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIR 132 P++ ++ + S++ + D G DD + KP E+ AR A+ RR + A+ G + Sbjct: 82 PVLILTAHGSVEERVRGLDLGADDYLAKPFALTELEARARALLRRGHGQEASVAQCGTLV 141 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 S R + GE L RER +LE L+ G+ + K + I+GL DE+V + +E Sbjct: 142 YDSVDRGFTLDGEPLALTPRERSVLEVLILRNGRAINKETLSEKIFGL-DESVNADAIEI 200 Query: 193 HISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 ++ +LRKKL R+ +G + + R LGY ++ Sbjct: 201 YVYRLRKKLERSSVG---IVTLRGLGYLLE 227 >gi|220923033|ref|YP_002498335.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219947640|gb|ACL58032.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 223 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 6/149 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPI 131 P+I ++ + + ++G DD + KP E+ AR++A+ RR + N T G + Sbjct: 73 TPVIILTARDQISDRIAGLNAGADDYLIKPFDLFELTARISAVGRRYSGNPNPLVTIGDL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + R G+ PL RE + E L+ ++KTQ+ +Y FD VE N +E Sbjct: 133 DIDLAARSVHKGGKPVPLTAREWSLFEALIQRPNALLSKTQLEERLYS-FDAEVESNTIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +I +LRK K+G D +++ R +GY + Sbjct: 192 VYIGRLRK----KIGADVIETVRGMGYRL 216 >gi|157151157|ref|YP_001450078.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075951|gb|ABV10634.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 233 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 10/152 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S VP+I +S S + + G DD V KP +RE+ ARV AI RR + Sbjct: 61 LEVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSE 120 Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + +N G +++ D + GE L RE +L +L ++ G+ + + Sbjct: 121 FAVDTQENEKGSNELTVGELQILPDAFVAKKHGEELELTHREFELLYHLASHVGQVMTRE 180 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ I +LR+K+ + Sbjct: 181 HLLETVWG-YDYFGDVRTVDVTIRRLREKIED 211 >gi|311064059|ref|YP_003970784.1| two-component response regulator [Bifidobacterium bifidum PRL2010] gi|310866378|gb|ADP35747.1| Two-component response regulator [Bifidobacterium bifidum PRL2010] Length = 245 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 20/143 (13%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI------RVFSDGRDPEVQGEVF 147 G DD V KP E++AR+ AI RR + + E PI + D D G Sbjct: 100 GGDDYVTKPFSLEEVVARIRAILRR---TREQVEDDPIIRVGDLEINEDSHDVSRAGYAI 156 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E ++L YLM N G+ ++K QI ++ +D + +VES+IS LRKK+ + Sbjct: 157 DLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ-YDWGGDAAIVESYISYLRKKVDGIMVT 215 Query: 208 DP----------VDSKRFLGYSI 220 D +++KR +GY I Sbjct: 216 DDNGEQHKVTPLIETKRGIGYMI 238 >gi|269796544|ref|YP_003315999.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098729|gb|ACZ23165.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 271 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 100/206 (48%), Gaps = 20/206 (9%) Query: 30 NSLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIG 77 ++L +E W S+A + +A+ ++G + + L RI + VP++ Sbjct: 40 SALRYEGWDVSTALDGQTAVRLARETVPDVIVLDIMLGDIDGLEVLRRIRQQQEGVPVLF 99 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRV 133 ++ S++ + +G DD V KP E++AR+ + RR S R E G + + Sbjct: 100 LTARDSVEDRVAGLTAGGDDYVTKPFSLEEVVARLRGLLRRAGASAARDEARLVVGDLTL 159 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D + + G+ L E +L YLM N + ++K+QI ++ +D + N+VE + Sbjct: 160 DEDSHEVDRAGQEIHLTATEFELLRYLMRNARRVMSKSQILDRVWQ-YDFGGQANIVELY 218 Query: 194 ISKLRKKLRNKLGFDP-VDSKRFLGY 218 IS LR+K+ G +P + + R +GY Sbjct: 219 ISYLRRKI--DAGREPMIHTLRGVGY 242 >gi|255656953|ref|ZP_05402362.1| DNA-binding response regulator [Clostridium difficile QCD-23m63] gi|296452205|ref|ZP_06893913.1| transcriptional regulator FeuP [Clostridium difficile NAP08] gi|296877559|ref|ZP_06901590.1| transcriptional regulator FeuP [Clostridium difficile NAP07] gi|296258944|gb|EFH05831.1| transcriptional regulator FeuP [Clostridium difficile NAP08] gi|296431410|gb|EFH17226.1| transcriptional regulator FeuP [Clostridium difficile NAP07] Length = 223 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 4/165 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G ++LE R + P+I ++ + D G DD + KP E+ AR+ A+ Sbjct: 59 GIEILEFFR--SNNLNTPVIIVTARDGVNELAKGLDLGADDYIVKPFQIIELRARIQAVI 116 Query: 117 RRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR +N E+GPI + R V E L +E I+EYL + V+ I Sbjct: 117 RRFYGRTNPNIESGPITINPSSRKVYVYNEEVTLGTKEFDIVEYLASRYPDIVSGIDISE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y + + + +V+ HI++L+KKLR G + + + R +GYSI Sbjct: 177 HVYDEYFDPLS-SVLRVHIARLKKKLREVAGKEIIITTRGIGYSI 220 >gi|221369433|ref|YP_002520529.1| Transcriptional regulator, winged helix family [Rhodobacter sphaeroides KD131] gi|221162485|gb|ACM03456.1| Transcriptional regulator, winged helix family [Rhodobacter sphaeroides KD131] Length = 221 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 100/224 (44%), Gaps = 15/224 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEA----FLIGKG 57 ++++D ++ DG G+ L GF + A D EA ++ G Sbjct: 4 ILIVEDDPVLADGLQV-----GLRLAGFGPEAVGTLEDARAALDAGRFEAMVLDLMLPDG 58 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 + L + A VP++ ++ L + D G DD + KP E+ AR+ A+ R Sbjct: 59 SGLDLLAELRAAREAVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRALGR 118 Query: 118 R-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R ++ R E + + + G L RE +L LMA+ ++K QI Sbjct: 119 RPAALATPRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIEEQ 178 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E +E N +E H+ KLR KL + GF +++ R +GY + Sbjct: 179 LYG-WQEEIESNAIEVHVHKLRAKLGH--GF--IETVRGVGYRL 217 >gi|254486503|ref|ZP_05099708.1| two-component response regulator [Roseobacter sp. GAI101] gi|214043372|gb|EEB84010.1| two-component response regulator [Roseobacter sp. GAI101] Length = 223 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 6/165 (3%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L + +R A + P++ ++ S+ + ++G DD + KP E+ ARVAA+ RR Sbjct: 60 LTLVKTLRGAGNTTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVAALARRP 119 Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V + G + + R G+ L RE +LE+L+ +G+ +T + A+ Sbjct: 120 QVLEQDTVLRAGDLEMHLITRKVTRGGQDIDLLPREFALLEHLLRRKGRVQTRTMLLEAV 179 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + FD NVVE+HIS+LR K+ + + + R GY ID Sbjct: 180 WDISFDPMT--NVVETHISRLRAKVDKPFDRELIHTVRGAGYRID 222 >gi|229020091|ref|ZP_04176872.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229026320|ref|ZP_04182679.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|229032496|ref|ZP_04188464.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228728865|gb|EEL79873.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228735036|gb|EEL85672.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228741201|gb|EEL91418.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 231 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 65 RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S E +++F + + E L ++E + E L++ + ++ + +A++ Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGAEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 DE+ VEEN + +I++LRKK N+LG + +++ R LGY Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223 >gi|239625973|ref|ZP_04669004.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239520203|gb|EEQ60069.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 224 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 3/129 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPL 149 F +G DD + KP+ E++ R+ A+ RR ++++ R T G + + D G L Sbjct: 92 FMAGTDDYMTKPVDEEEMVLRIRALLRRAQIASERKITIGNVILDYDSLSVTRDGSSQTL 151 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 PR+E +L L++ GK + Q+ I+G+ E ++N + HI++LRK+ + F Sbjct: 152 PRKEFYLLYKLLSYPGKIFTRIQLMDEIWGIESET-DDNTINVHINRLRKRFEHYPEF-T 209 Query: 210 VDSKRFLGY 218 +++ R LGY Sbjct: 210 IETIRGLGY 218 >gi|83816273|ref|YP_446921.1| response regulator receiver domain-containing protein [Salinibacter ruber DSM 13855] gi|294508860|ref|YP_003572919.1| Response regulator receiver, transcriptional regulatory protein [Salinibacter ruber M8] gi|83757667|gb|ABC45780.1| response regulator receiver domain protein [Salinibacter ruber DSM 13855] gi|294345188|emb|CBH25966.1| Response regulator receiver, transcriptional regulatory protein [Salinibacter ruber M8] Length = 247 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 89/163 (54%), Gaps = 8/163 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ +R H ++P++ ++ +++ + +G DD + KP E+LAR+ A+ RR+ Sbjct: 64 LEVCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRV 123 Query: 120 KVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R E GP+ + R GE L E +L +LMA G+ +++ I + Sbjct: 124 DRPSEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEV 183 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218 +G FD N+++ +++ +R+KL +++G + P+++ R +GY Sbjct: 184 WGHDFDRGT--NLIDVYVNYVRRKL-DEVGCEAPIETVRGIGY 223 >gi|332686214|ref|YP_004455988.1| two-component response regulator BceR [Melissococcus plutonius ATCC 35311] gi|332370223|dbj|BAK21179.1| two-component response regulator BceR [Melissococcus plutonius ATCC 35311] Length = 227 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 7/140 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122 IR S +P+I IS + + + G DD V KP ++A++ A+ RR +VS Sbjct: 70 IRKQSNIPIIFISSRNTNMDMIMAMNMGADDFVTKPFQMDVLIAKINALIRRTYNYSEVS 129 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + + I + D E+ G+V L + E R+L LM GK + + ++ A++ D Sbjct: 130 SEKISHNGITLNIDNGSMEINGQVIDLSKNEYRLLYILMKKNGKILTREKLLRALWE--D 187 Query: 183 EA-VEENVVESHISKLRKKL 201 E V++N + +I+++R+K+ Sbjct: 188 ERFVDDNTLTVNINRIRRKI 207 >gi|323972872|gb|EGB68071.1| heavy metal response regulator [Escherichia coli TA007] Length = 290 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254 >gi|300931183|ref|ZP_07146528.1| putative transcriptional activator protein Irlr [Escherichia coli MS 187-1] gi|300460990|gb|EFK24483.1| putative transcriptional activator protein Irlr [Escherichia coli MS 187-1] gi|323948330|gb|EGB44317.1| heavy metal response regulator [Escherichia coli H120] Length = 290 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254 >gi|257459719|ref|ZP_05624828.1| DNA-binding response regulator [Campylobacter gracilis RM3268] gi|257443144|gb|EEV18278.1| DNA-binding response regulator [Campylobacter gracilis RM3268] Length = 220 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 10/169 (5%) Query: 54 IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 I KG+ L + ++ + P I + +L F SG DD + KP +E+L RV Sbjct: 55 IPKGDGFSLLKELRKSGDRTPAIFATSLNTLDDLEVGFKSGCDDYLKKPYELKELLLRVN 114 Query: 114 AIYRRLKVSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 ++ +R S+N E I + + ++ G L +ER +L + N+ + ++ Sbjct: 115 SLIKR-SFSHNFDEFVTIDDEFKFYFASKELRRSGVPVALSNKERELLALFLQNKNRLLS 173 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 K +IFSAIY FDE E + ++I K LR LG + + ++R GY Sbjct: 174 KDEIFSAIYA-FDETPSEEALRTYI----KNLRRVLGEEHIINRRNAGY 217 >gi|242372310|ref|ZP_04817884.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242350039|gb|EES41640.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 221 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 6/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 +R S VP++ IS + G DD + KP + +A++ A+ RR L VSN Sbjct: 66 MRKVSNVPIMFISSRTDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLSVSN 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + ++ D +GE L E +IL+ L N GK V++T + + + Sbjct: 126 DELDVKGCKLILDEAKLIKEGEAVQLSLTELQILKMLFQNEGKYVSRTTLIEKCWE-SEN 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +++N + ++++LRKKL + +G D +++K+ +GY + Sbjct: 185 FIDDNTLAVNMTRLRKKL-SSIGVDHFIETKKNVGYRV 221 >gi|148378320|ref|YP_001252861.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153933406|ref|YP_001382720.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936909|ref|YP_001386271.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|168177660|ref|ZP_02612324.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|148287804|emb|CAL81870.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152929450|gb|ABS34950.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932823|gb|ABS38322.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|182671215|gb|EDT83189.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 230 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 9/164 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S++P+I IS S + ++G DD + KP + I+A++ + RR Sbjct: 66 RRIRQKSKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYA 125 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 KV E ++ + + + E + E + ++E +LEYLM K V + + I+ Sbjct: 126 PKVDEKIVELQGLKFYKERSEIEFKDERVIITKKEGILLEYLMKKYPKVVNRDFLLEKIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 E VEEN + ++S++RK+L +KLG D +++ R +GY ++ Sbjct: 186 DDI-EFVEENTLNVNVSRIRKRL-HKLGIEDGIETVRGVGYRLN 227 >gi|104774339|ref|YP_619319.1| two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514434|ref|YP_813340.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423420|emb|CAI98293.1| Two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093749|gb|ABJ58902.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126134|gb|ADY85464.1| Two-component system regulator [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 237 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 12/175 (6%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L + ED AI L+ LE+ R +R P+I ++ S+ + D G DD Sbjct: 38 LDRALSEDFDAILLDLMLPDLNGLEIARRVRQSKTTPIIMMTARDSVIDRVSGLDHGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFSDGRDPEVQ-------GEV 146 + KP E+LAR+ A+ RR+K+ S N+ + F D G+ Sbjct: 98 YIVKPFAIEELLARLRAVLRRVKIEKDASKNKLPRQKVVKFKDLTIETANRIVHRGDGKT 157 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L +RE +L L+ N+ V + Q+ + I+G + +E NVVE ++ LR K+ Sbjct: 158 VDLTKREYNLLMTLIENKNNVVGRDQLLNKIWG-PESNIETNVVEVYVRYLRNKI 211 >gi|15839182|ref|NP_299870.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c] gi|9107813|gb|AAF85390.1|AE004066_4 two-component system, regulatory protein [Xylella fastidiosa 9a5c] Length = 266 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 102/227 (44%), Gaps = 17/227 (7%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL--------IGK 56 + R L+ D +A+ D V+ EFE S ARE + I + + Sbjct: 36 VQKRVLIVDDEVAI--RDMVAF-ALRKGEFESLQASDAREAQAVIADCVPDLILLDWMLP 92 Query: 57 GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G LEL R R S ++P+I ++ + ++GVDD + KP RE+LAR+ Sbjct: 93 GTSGLELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIR 152 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEV-QGEV-FPLPRRERRILEYLMANRGKRVAKT 171 A+ RR + + ++ DG V G V P+ E R+L + M + + ++T Sbjct: 153 AVMRRTRDDDEDGSVAIGKLRIDGAAHRVYAGHVQVPIGPTEYRLLHFFMTHSERVYSRT 212 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 Q+ ++G +EE ++ HI +LR+ L D V + R GY Sbjct: 213 QLLDHVWG-SGVYIEERTIDVHIRRLRRTLEPYGLDDMVQTVRSAGY 258 >gi|187776443|ref|ZP_02802733.2| heavy metal response regulator [Escherichia coli O157:H7 str. EC4196] gi|189406170|ref|ZP_02826753.2| heavy metal response regulator [Escherichia coli O157:H7 str. EC508] gi|12516077|gb|AAG56982.1|AE005418_10 putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. EDL933] gi|13362175|dbj|BAB36130.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. Sakai] gi|187767096|gb|EDU30940.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4196] gi|189376147|gb|EDU94563.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC508] gi|209766628|gb|ACI81626.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209766630|gb|ACI81627.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209766632|gb|ACI81628.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209766634|gb|ACI81629.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209766636|gb|ACI81630.1| putative 2-component transcriptional regulator [Escherichia coli] Length = 239 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 58 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 117 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 118 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 177 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 178 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 233 >gi|154243815|ref|YP_001409388.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154162937|gb|ABS70152.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 235 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 29/194 (14%) Query: 22 DGVSLEGFNSLEFEEWLQSSAREDVSA--IEAFLIG----KGEKVLELPRIIRAHSQVPL 75 +G LE F SL S+ARE V+ + FLI G+ + + + RA + P+ Sbjct: 23 EGFVLERFGSL-------SAARESVAVDRYDLFLIDLGMPDGDGIDFVRAVRRAGNTTPI 75 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAE 127 + I+ L + DSG DD + KP E+ AR A+ RR L V N + Sbjct: 76 LVITARNGLGDRVGGLDSGADDYLVKPFDMPELAARCRALLRRPGACLGTTLNVENLDFD 135 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 T R+ + G+V +P RE +LE LM G V+K + +Y L E V Sbjct: 136 T-------IAREVRISGQVIHVPPRECALLERLMRRAGHVVSKASLEDTMYALSSE-VSP 187 Query: 188 NVVESHISKLRKKL 201 N +E+ +S+LR++L Sbjct: 188 NALEAVVSRLRRRL 201 >gi|317122445|ref|YP_004102448.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592425|gb|ADU51721.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 258 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 62/198 (31%), Positives = 93/198 (46%), Gaps = 18/198 (9%) Query: 14 GYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 G+ + DGVS L F++L Q A V+A+ L+ G E+ +R SQ Sbjct: 48 GFAVVEAGDGVSALAAFDALV----RQGRA---VAAVVLDLMLPGLDGWEVCERLRERSQ 100 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAE 127 VP++ ++ + L F G DD V KP RE++AR+ A+ RR V AE Sbjct: 101 VPILMLTARGEIHERLHGFHLGADDYVVKPFDPREVVARIRALSRRAAPAPGGVRPAGAE 160 Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 G + + R V G L R E +L L +RG+ +++ QI + G D Sbjct: 161 PALHFGRLTIDPGARTVTVDGHPVSLTRTEFDLLYTLAQHRGQTLSRQQILDRLRG-GDY 219 Query: 184 AVEENVVESHISKLRKKL 201 +E V++SHI LR+KL Sbjct: 220 FGDERVIDSHIRNLREKL 237 >gi|315648980|ref|ZP_07902074.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315275661|gb|EFU39015.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 228 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 4/159 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 L R+ S P++ ++ ++ + D+G DD + KP E+LARV A+ RR Sbjct: 65 LRRLREGGSTTPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRKTGD 124 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 SN+R + + +D R+ G+ L +E +L M N + +++ I I+G Sbjct: 125 DSSNHRLTYEDLIMDTDAREVIRSGQRLELTAKEFELLHLFMQNPKRVLSRDLIMDKIWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +D + E NV+E +I+ LR+K G + + R GY Sbjct: 185 -YDYSGESNVLEVYIAMLRQKTEEHGGKRLIQTIRGAGY 222 >gi|229014045|ref|ZP_04171169.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|229062531|ref|ZP_04199844.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228716814|gb|EEL68505.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228747301|gb|EEL97180.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 231 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 65 RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S E +++F + + E L ++E + E L++ + ++ + +A++ Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGAEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 DE+ VEEN + +I++LRKK N+LG + +++ R LGY Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223 >gi|260587759|ref|ZP_05853672.1| DNA-binding response regulator DltR [Blautia hansenii DSM 20583] gi|260542024|gb|EEX22593.1| DNA-binding response regulator DltR [Blautia hansenii DSM 20583] Length = 224 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 81/160 (50%), Gaps = 2/160 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLKV 121 L I + + +P++ ++ + ++ D+G +D + KP H +E+LAR+ A+ R + Sbjct: 63 LKEIRKKGNLIPVLLLTAKSEVDDKVEGLDAGANDYLAKPFHSKELLARIRAMTRVQTGQ 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + G + + + F L +E +++E +M+N G ++ + I+G + Sbjct: 123 TGSILKMGNVTLNRAAFELSTSKGSFRLANKEFQMIELMMSNPGVLISAERFMEKIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D E NVV +IS LRKKL + R +GYS++ Sbjct: 182 DSEAEINVVWVYISYLRKKLAALQADIQIKVTRSVGYSLE 221 >gi|257413137|ref|ZP_05591538.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|257204550|gb|EEV02835.1| regulatory protein VanR [Roseburia intestinalis L1-82] Length = 234 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 17/169 (10%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S +P+I +S + + G DD V KP + E++ARV + RR N A Sbjct: 71 IREESSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQLGNAA 130 Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E+ G + + D ++ V GEV L E IL L+ N+GK + QI+ +I+ Sbjct: 131 ESSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIYESIWN 190 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSIDWN 223 D +N V HI +R+K+ +P + + +GY ID N Sbjct: 191 -EDAIGADNTVAVHIRHIREKIE----INPKEPRYLKVVWGVGYKIDKN 234 >gi|192360483|ref|YP_001983964.1| response regulator receiver domain-containing protein [Cellvibrio japonicus Ueda107] gi|190686648|gb|ACE84326.1| Response regulator receiver domain protein [Cellvibrio japonicus Ueda107] Length = 219 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 6/150 (4%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130 QV ++ ++ S + D+G DD + KP E+LAR+ + RRL +N GP Sbjct: 72 QVQVLILTARDSTNAKVLGLDAGADDYLTKPFALDELLARLRVLERRLGTANTAMIHVGP 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + G+ L RRE +L+ L+ N G + + + +Y DE V N + Sbjct: 132 LSLNTTQHLVLLNGDALVLSRREYMLLKALVENLGIIQTRESLEAKLYSWNDE-VASNAI 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E HI LRKKL L F + + R +GY + Sbjct: 191 EVHIHNLRKKL--PLNF--IRTIRGVGYVV 216 >gi|77465432|ref|YP_354935.1| transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77389850|gb|ABA81034.1| transcriptional regulator, winged helix family [Rhodobacter sphaeroides 2.4.1] Length = 221 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 19/226 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI------G 55 ++++D ++ DG G+ L GF + A D EA ++ G Sbjct: 4 ILIVEDDPVLADGL-----QVGLRLAGFVPEAVGTLEDARAALDAGRFEAMVLDLMLPDG 58 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G ++L R R VP++ ++ L + D G DD + KP E+ AR+ A+ Sbjct: 59 SGLELLAELRAAR--EAVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRAL 116 Query: 116 YRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR ++ R E + + + G L RE +L LMA+ ++K QI Sbjct: 117 GRRPAALATTRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQIE 176 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E +E N +E H+ KLR KL + GF +++ R +GY + Sbjct: 177 EQLYG-WQEEIESNAIEVHVHKLRAKLGH--GF--IETVRGVGYRL 217 >gi|227327067|ref|ZP_03831091.1| DNA-binding transcriptional regulator PhoP [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|301069182|dbj|BAJ11970.1| response regulator PehR [Pectobacterium carotovorum subsp. carotovorum] Length = 229 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 50/222 (22%), Positives = 103/222 (46%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L++ + G ++ + + ++ D++ ++ L E + Sbjct: 3 ILVVEDNVLLRHHLTVQMNEMGHQVDAASDAKEADYFLHENMPDIAIVDLGL--PDEDGM 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R RAH ++P++ ++ Q + ++G DD V KP H E++AR+ A+ RR Sbjct: 61 SMIRRWRAHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMRRNS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ P + R+ + G L E I+E L+ N+GK V+K + +Y Sbjct: 121 GLASQVISLPPFEIDLSRRELVIHGGPIKLTAFEYTIIETLIRNKGKVVSKESLMLQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E + ++ + +LRKK++ D + + R GY D Sbjct: 181 -DAELRESHTIDVLMGRLRKKIQQAEAPDVITTVRGQGYRFD 221 >gi|169826014|ref|YP_001696172.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168990502|gb|ACA38042.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 228 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 6/140 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKV 121 IRA S VP+I ++ + + + G DD + KP H E+ AR+ A+ RR ++ Sbjct: 68 IRAMSNVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELAARIYAVLRRSGANIAEL 127 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 GPI++ R V G+ PL +E +L M N G + Q+ I+ + Sbjct: 128 QQKYVVFGPIKIDEIARKVSVHGKSIPLTLKEFELLHLFMKNPGNAYTREQLLERIWDI- 186 Query: 182 DEAVEENVVESHISKLRKKL 201 D V++HI LR KL Sbjct: 187 DYVGGTRTVDTHIKTLRIKL 206 >gi|104784360|ref|YP_610858.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas entomophila L48] gi|95113347|emb|CAK18075.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas entomophila L48] Length = 229 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 105/217 (48%), Gaps = 32/217 (14%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 +++DD A +++ IA+ + + G++ LE E Q+ A + D+ ++ L Sbjct: 6 ILIVDDEAPIRE-MIAV----ALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--P 58 Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ +P+I ++ + + G DD + KP RE++AR+ Sbjct: 59 GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRA--ETG-----PI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 A+ RR S++ A E G PI RV DGR E + E R+L++ M ++ Sbjct: 119 AVLRRTGPSDSEAPIEVGGLLLDPISHRVTIDGRPAE-------MGPTEYRLLQFFMTHQ 171 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + + Q+ ++G + VEE V+ HI +LRK L Sbjct: 172 ERAYTRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207 >gi|330505347|ref|YP_004382216.1| DNA-binding response regulator CreB [Pseudomonas mendocina NK-01] gi|328919633|gb|AEB60464.1| DNA-binding response regulator CreB [Pseudomonas mendocina NK-01] Length = 226 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 4/162 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R S+VP+I ++ + + G DD V KP RE+ ARV AI +R+ Sbjct: 61 FEVCKRLRRFSEVPVIFLTARSEEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRVA 120 Query: 121 VSNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + P ++ G+ L R E R+L L+ + ++ Q+ A+ Sbjct: 121 PREAPAASAPSIFQIDDAAFRIHYHGQALSLTRHEFRLLRTLLGQPRRVYSREQLLDAL- 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 G+ EA E ++SHI +R KLR +P+ + R LGYS Sbjct: 180 GVASEAGYERNIDSHIKSVRAKLRAIAPSEEPIQTHRGLGYS 221 >gi|315651808|ref|ZP_07904812.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315485938|gb|EFU76316.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 225 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 101/211 (47%), Gaps = 23/211 (10%) Query: 2 FVLIDD----RALVKD-----GYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEA 51 +++DD R LVKD GYI L +DG EE L+ +D+ I Sbjct: 6 ILVVDDEARMRKLVKDFLSIKGYIVLEAEDG-----------EEALKVFDTNKDIKLILL 54 Query: 52 FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 ++ E+ IR +S+VP++ ++ + L+ + GVD+ + KP + ++AR Sbjct: 55 DVMMPKMDGFEVLEAIRQYSKVPVMMLTARSEERDELEGYKLGVDEYITKPFSPKILVAR 114 Query: 112 VAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 V A+ RR + + G I V R + + L +E +L Y + N+G +++ Sbjct: 115 VEAVLRRTVGEPEEKLVAGAIEVDKVARSVYIDKKPVDLSFKEYELLTYFIENKGIALSR 174 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +I S+++ +D + +++H+ KLR K+ Sbjct: 175 EKILSSVWN-YDYFGDARTIDTHVKKLRAKM 204 >gi|238923173|ref|YP_002936686.1| two component transcriptional regulator, winged helix family [Eubacterium rectale ATCC 33656] gi|238925077|ref|YP_002938594.1| two component transcriptional regulator, winged helix family [Eubacterium rectale ATCC 33656] gi|238874845|gb|ACR74552.1| two component transcriptional regulator, winged helix family [Eubacterium rectale ATCC 33656] gi|238876753|gb|ACR76460.1| two component transcriptional regulator, winged helix family [Eubacterium rectale ATCC 33656] gi|291535286|emb|CBL08398.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 232 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 53/207 (25%), Positives = 101/207 (48%), Gaps = 9/207 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLI-GKGE 58 + +L DD +L+ DG + + +E ++ E +++L R D+ ++ L G G Sbjct: 4 ILLLEDDVSLI-DGLVYSLKKNEFDVEVARTVCEAKQYLSELDRYDLLILDVTLPDGTGF 62 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 V E R+ + + Q+P+I ++ + + DSG DD + KP E+ +R+ A+ RR Sbjct: 63 DVCE--RVRKENQQIPIIFLTASDEEVSIIRGLDSGGDDYITKPFKLGELCSRIRALLRR 120 Query: 119 LKVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 VS N E G I + G ++G+ L E R+L L+ N + V + I Sbjct: 121 AGVSKSEKNTSMECGDITIDLLGSRATLKGKALDLTSAEYRLLCLLVRNANRVVTRDIIL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 + ++ V++N + ++ +LR+K+ Sbjct: 181 NELWDDTGNFVDDNTLSVYVRRLREKV 207 >gi|228984473|ref|ZP_04144650.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775176|gb|EEM23565.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 209 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 3/137 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR + Sbjct: 55 IRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQE 114 Query: 127 ET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E GPI + R E GE L +E +L +L + G+ ++ Q+ ++G +D A Sbjct: 115 EIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG-YDYA 173 Query: 185 VEENVVESHISKLRKKL 201 V++H+ +R KL Sbjct: 174 GSTRTVDTHVKTMRLKL 190 >gi|229169580|ref|ZP_04297283.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228613855|gb|EEK70977.1| DNA-binding response regulator [Bacillus cereus AH621] Length = 231 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 65 RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S E +++F + + E L ++E + E L++ + ++ + +A++ Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGAEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 DE+ VEEN + +I++LRKK N+LG + +++ R LGY Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223 >gi|269926249|ref|YP_003322872.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269789909|gb|ACZ42050.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 227 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 91/183 (49%), Gaps = 10/183 (5%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRIIRAHSQVPLIGISDYPS 83 EGFN + + LQ+ R + + ++ + E+ + IR S P+I ++ Sbjct: 23 EGFNVIAASDGLQALRRWQMDHPDVVVLDANMPKMNGFEVCKRIREQSNTPVILLTALND 82 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-----RAETGPIRVFSDGR 138 + F G DD V KP HR++ R+ A+ +R +++ + +GP+ + D Sbjct: 83 EDHIVQGFHIGADDYVTKPFSHRQLAMRIRAVAKRNSSASSVDFSGKLVSGPLSLDRDTH 142 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 + + L E ++L L+AN G+ V +++ +G +DE +E+++++HIS +R Sbjct: 143 EVLLDDREIHLTPTEFKLLYILVANAGRVVPSSRLVEYAWG-YDEG-DESLLKTHISHIR 200 Query: 199 KKL 201 +KL Sbjct: 201 RKL 203 >gi|92116259|ref|YP_575988.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799153|gb|ABE61528.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 233 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 13/196 (6%) Query: 33 EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLD 89 E + WL+ D+ ++ L G +EL R +RA Q+P+I ++ + Sbjct: 37 EADTWLKERT-PDLVVLDWML--PGLSGIELCRRLRARPETRQLPIIMLTARGEESERVR 93 Query: 90 FFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGE 145 +G DD V KP E+LARV + RR S R T G I + D G Sbjct: 94 GLATGADDYVVKPFSVPELLARVKGLLRR--ASPERLATILSFGDIELDRDKHRVARSGR 151 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 L E R+LE+ + + G+ ++ Q+ +++G D ++E V+ HI +LRK + Sbjct: 152 PIDLGPTEYRLLEFFLEHPGRVFSREQLLDSVWG-RDIYIDERTVDVHIGRLRKLINPGG 210 Query: 206 GFDPVDSKRFLGYSID 221 DP+ + R GY++D Sbjct: 211 EPDPIRTVRGAGYALD 226 >gi|50841845|ref|YP_055072.1| response regulator [Propionibacterium acnes KPA171202] gi|282853420|ref|ZP_06262757.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|50839447|gb|AAT82114.1| response regulator [Propionibacterium acnes KPA171202] gi|282582873|gb|EFB88253.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314922289|gb|EFS86120.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314965397|gb|EFT09496.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314982508|gb|EFT26601.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315091052|gb|EFT63028.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315094140|gb|EFT66116.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|315104789|gb|EFT76765.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|315106404|gb|EFT78380.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] gi|327329342|gb|EGE71102.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL103PA1] Length = 226 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 14/166 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ R +R V +I ++ S + + G DD V KP HRE++AR+ A+ RR Sbjct: 62 EVCRQLRQRGNVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGSP 121 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++VS + E +R+ + + V+G V L +E +LE L+ N G+ + + + + Sbjct: 122 EVEVSPDVLEESGVRMDVERHEVSVEGTVVRLALKEFDLLEVLLRNAGRVMTRASLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 +G D + ++ HI +LR K+ + DP + + R LGY Sbjct: 182 WG-ADYVGDTKTLDVHIKRLRAKIED----DPSRPVRITTVRGLGY 222 >gi|325284496|ref|YP_004257035.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324316670|gb|ADY27781.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 221 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 13/217 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++ DD A+++ L + LE + E L R D++ ++ L G Sbjct: 4 ILIVDDDPAILEILRAYLKAEGHTVLEACDGYSAREQL---PRADLAILDWML--PGVSG 58 Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 ++L R RA +P++ ++ + L D GVDD V KP RE++ARV A+ RR+ Sbjct: 59 VDLAREARASGLTLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVVARVRALLRRV 118 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V A G +R+ G + GE L + E +L L + G + ++ ++G Sbjct: 119 GVQEEIA-VGDLRIDLRGHSASLSGERLELSKLEFDLLSALAQHPGMAWPRERLLERVWG 177 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 D E VV+ HI+ LRKKL D D+ RF+ Sbjct: 178 -SDFPGTERVVDVHITGLRKKL-----GDTSDTPRFI 208 >gi|312897337|ref|ZP_07756763.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] gi|310621555|gb|EFQ05089.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] Length = 227 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 5/164 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L + IR S VP++ ISD + T + F+ G +D + KP + RE+ AR+ A+ K Sbjct: 63 LLLCKEIRKISAVPVLIISDCDDITTKVKAFEYGANDYLTKPFNCRELSARIHALLHSGK 122 Query: 121 -VSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V NN T ++ V D + ++ L ++E +L +L+ N+ +++ I Sbjct: 123 AVCNNFRRTLTLKDLLVDLDAHEVYIKERRISLTKKEFSLLTFLIHNKNIVLSRHSILEH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D NVV+ +I LR KL + + R +GY + Sbjct: 183 VWG-YDFFGTTNVVDVYIRYLRSKLCTDRHESYITTVRGVGYIV 225 >gi|294012877|ref|YP_003546337.1| two-component system phosphate regulon response regulator PhoB [Sphingobium japonicum UT26S] gi|292676207|dbj|BAI97725.1| two-component system phosphate regulon response regulator PhoB [Sphingobium japonicum UT26S] Length = 233 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 86/173 (49%), Gaps = 14/173 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +V R + + VP+I ++ + + ++G DD V KP RE++ARV A+ Sbjct: 62 GIEVCRRLRRMNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVL 121 Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR++ A G F+D G G+V PL E R+L++ + + G ++ Sbjct: 122 RRVRP----ALAGETLTFADVEMDTVGHKVRRGGQVIPLGPTEFRLLKHFLEHPGWVFSR 177 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSID 221 ++ +++G D +E V+ HI +LRK + N G D + + R GY++D Sbjct: 178 ERLLDSVWGQ-DSDIELRTVDVHIRRLRKAI-NADGRHRDIIRTVRSAGYALD 228 >gi|223986660|ref|ZP_03636651.1| hypothetical protein HOLDEFILI_03973 [Holdemania filiformis DSM 12042] gi|223961373|gb|EEF65894.1| hypothetical protein HOLDEFILI_03973 [Holdemania filiformis DSM 12042] Length = 221 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 9/178 (5%) Query: 45 DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D+ ++ L G GE V+E + +P+I +S + +D SG D + KP Sbjct: 47 DLILLDLMLPGISGEAVME------SVPDIPVIIVSARGEIDDKVDLLRSGAADYITKPF 100 Query: 104 HHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 RE+LAR+ R N T GP+ + + G+ L R E IL+ LM Sbjct: 101 DTRELLARIEVQLRPAAGRRNPDLTCGPLTLSPLLQQVSAGGQTVKLTRTETAILKLLMR 160 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N G+ + K+++ I + + EN ++ HIS LR KLRN + ++S +G+ + Sbjct: 161 NPGQVITKSEMLEQISEDTPDGM-ENSLKVHISHLRAKLRNIWDQEIIESVWGIGFKL 217 >gi|160938728|ref|ZP_02086080.1| hypothetical protein CLOBOL_03623 [Clostridium bolteae ATCC BAA-613] gi|158438427|gb|EDP16186.1| hypothetical protein CLOBOL_03623 [Clostridium bolteae ATCC BAA-613] Length = 240 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 3/156 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R + P+I + + +D D+G DD + KP E+LAR+ A+ RR Sbjct: 80 RMNITTPVIITTALDGINDRIDGLDAGADDYLVKPYAAGELLARIRALTRRPGNFKQSPS 139 Query: 128 TGPIRVFSDGRDPEVQGEV--FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + D E+ G + L +RE ++EYL+ N+G+ + + I S I+G D V Sbjct: 140 AACSNISLDPEKRELTGPLGTLQLSKRESALMEYLIRNKGQVLPRGLILSYIWG-PDSDV 198 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 EE ++++I LR++L++ + + +GY ++ Sbjct: 199 EEGNLDNYIYFLRRRLKSIGALPQIKTVHGIGYRLE 234 >gi|3724162|emb|CAA09795.1| PhoP protein [Yersinia enterocolitica] Length = 200 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 98/200 (49%), Gaps = 5/200 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ + G ++ + ++ D++ I+ L GE L Sbjct: 4 LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 L R R+H + +P++ ++ S Q + ++G DD V KP H E++AR+ A+ RR + Sbjct: 62 LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMRRNIG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ E P ++ R+ V + L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQIIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKK 200 E E + ++ + +LRKK Sbjct: 181 DAELRESHTIDVLMGRLRKK 200 >gi|118580643|ref|YP_901893.1| two component transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118503353|gb|ABK99835.1| two component transcriptional regulator, winged helix family [Pelobacter propionicus DSM 2379] Length = 222 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 25/193 (12%) Query: 22 DGVSLEGF------NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPL 75 D +S GF N L+ W++ D+ ++ L G+ LE+ + IR+ S VP+ Sbjct: 20 DYLSQSGFETHRLRNGLDVVPWVRER-NPDLILLDLMLPGRDG--LEICKEIRSFSSVPI 76 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETG 129 I + L + G DD + KP RE++ARV A+ RR +K S + Sbjct: 77 IMTTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRTDGGTTIKASGLTLDEL 136 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE-AVEEN 188 +R + RD E+ F ++L++L AN G+ ++ Q+ IY DE V + Sbjct: 137 RLRAVLNDRDLELTAVEF-------KLLQFLAANPGRIYSRQQLMDRIYP--DERIVSDR 187 Query: 189 VVESHISKLRKKL 201 ++SHI KLR+K+ Sbjct: 188 TIDSHIKKLRRKI 200 >gi|302539344|ref|ZP_07291686.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302448239|gb|EFL20055.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 257 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 10/160 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA ++P+I ++ S + +G DD + KP RE++AR+ A+ RR + Sbjct: 99 EVCRGIRAAHEIPVIAVTARGSELDRVLGLQAGADDYLVKPYGFRELMARMEAVMRRARP 158 Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + A T GP+R+ + R+ + GE R+E +L L ++ + + + ++ Sbjct: 159 TRPVAATITCGPLRIDAGTREVTLNGEPVETTRKEFDMLYLLASHPDTVIPRKMLMQQVW 218 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G ++ V++H+S LRNK+G + + R +G+ Sbjct: 219 G---DSWSRRTVDTHVS----TLRNKIGAGWIITIRGVGF 251 >gi|42783766|ref|NP_981013.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987] gi|222098050|ref|YP_002532107.1| DNA-binding response regulator phop [Bacillus cereus Q1] gi|229198737|ref|ZP_04325435.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|42739696|gb|AAS43621.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987] gi|221242108|gb|ACM14818.1| DNA-binding response regulator PhoP [Bacillus cereus Q1] gi|228584759|gb|EEK42879.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|324328481|gb|ADY23741.1| DNA-binding response regulator PhoP [Bacillus thuringiensis serovar finitimus YBT-020] Length = 239 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 12/139 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----------GPIRVFSDGRDPEVQ 143 G DD + KP RE++ARV AI RR K+ T +++ + + Q Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVTESSDEESITIAELKILPEFYEAYFQ 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202 G L +E +L YL N+ + + + Q+ SA++ +D A + +V+ HIS LR K+ + Sbjct: 156 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQ 214 Query: 203 NKLGFDPVDSKRFLGYSID 221 N + + R LGY ++ Sbjct: 215 NTKKPTYIKTIRGLGYKLE 233 >gi|189010643|ref|ZP_02808375.2| heavy metal response regulator [Escherichia coli O157:H7 str. EC4076] gi|189403619|ref|ZP_02796631.2| heavy metal response regulator [Escherichia coli O157:H7 str. EC4486] gi|189404363|ref|ZP_02788923.2| heavy metal response regulator [Escherichia coli O157:H7 str. EC4501] gi|208810230|ref|ZP_03252106.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4206] gi|208816557|ref|ZP_03257677.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4045] gi|208819204|ref|ZP_03259524.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4042] gi|209398847|ref|YP_002271082.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4115] gi|217328961|ref|ZP_03445042.1| heavy metal response regulator [Escherichia coli O157:H7 str. TW14588] gi|188999283|gb|EDU68269.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4076] gi|189359672|gb|EDU78091.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4486] gi|189366025|gb|EDU84441.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4501] gi|208724746|gb|EDZ74453.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4206] gi|208730900|gb|EDZ79589.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4045] gi|208739327|gb|EDZ87009.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4042] gi|209160247|gb|ACI37680.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4115] gi|217318308|gb|EEC26735.1| heavy metal response regulator [Escherichia coli O157:H7 str. TW14588] gi|326342377|gb|EGD66158.1| Putative two-component system response regulator YedW [Escherichia coli O157:H7 str. 1044] Length = 233 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 52 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 111 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 112 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 171 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 172 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 227 >gi|160895466|ref|YP_001561048.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160361050|gb|ABX32663.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 262 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 9/154 (5%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--G 129 Q P++ +S + + +G DD + KP E+ AR+ A+ RR ++ E Sbjct: 102 QTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQIPAPAREMRLA 161 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 +R+ R E G+ L RE R+L +LM + + V +T + +++ FD + N Sbjct: 162 DLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVWDYRFDP--QTN 219 Query: 189 VVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 V++ HIS+LR K+ GF+P + + R +GYS+ Sbjct: 220 VIDVHISRLRGKVDK--GFEPALIHTVRGVGYSL 251 >gi|158319827|ref|YP_001512334.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140026|gb|ABW18338.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 226 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 18/217 (8%) Query: 8 RALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66 + VK GY + DG V LE ++ E++ + + +E + + ++ I Sbjct: 18 KGFVKKGYAVDYAVDGEVGLELYHINEYDLIILDLNLPSMDGLEVLETIREKDKMQRVLI 77 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLKVSNNR 125 + A S VP + D G +D + KP E+ ARV ++ R L N Sbjct: 78 LSARSTVP-----------DRIRGLDMGANDYLPKPFDFAELDARVRSLLRCELIQHNTS 126 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + I + + + V G +FPL RE I EYL+ +RG ++ + I+ D V Sbjct: 127 IQYDNIILDTRAKSILVNGVIFPLAPREYAIFEYLLIHRGTVISAETLIEHIW---DSEV 183 Query: 186 E--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +V++ HIS +RKKLR G + + + R GY I Sbjct: 184 NMFTDVIKVHISNIRKKLREASGKEYIVTVRGKGYLI 220 >gi|53717517|ref|YP_105500.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|53722482|ref|YP_111467.1| two-component response regulator [Burkholderia pseudomallei K96243] gi|67640031|ref|ZP_00438853.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|76819653|ref|YP_335649.1| two component response regulator [Burkholderia pseudomallei 1710b] gi|124382891|ref|YP_001024486.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126443643|ref|YP_001063069.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126447886|ref|YP_001078807.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|126457711|ref|YP_001076011.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|167002751|ref|ZP_02268541.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|167744626|ref|ZP_02417400.1| DNA-binding response regulator [Burkholderia pseudomallei 14] gi|167820246|ref|ZP_02451926.1| DNA-binding response regulator [Burkholderia pseudomallei 91] gi|167828621|ref|ZP_02460092.1| DNA-binding response regulator [Burkholderia pseudomallei 9] gi|167850081|ref|ZP_02475589.1| DNA-binding response regulator [Burkholderia pseudomallei B7210] gi|167898689|ref|ZP_02486090.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] gi|167907033|ref|ZP_02494238.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] gi|167915377|ref|ZP_02502468.1| DNA-binding response regulator [Burkholderia pseudomallei 112] gi|167923219|ref|ZP_02510310.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] gi|217425234|ref|ZP_03456729.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|254174447|ref|ZP_04881109.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|254185252|ref|ZP_04891841.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|254186777|ref|ZP_04893293.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|254194369|ref|ZP_04900801.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|254204224|ref|ZP_04910583.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|254209196|ref|ZP_04915543.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|254264284|ref|ZP_04955149.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] gi|254301543|ref|ZP_04968987.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|254355518|ref|ZP_04971798.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|52212896|emb|CAH38932.1| putative two-component response regulator [Burkholderia pseudomallei K96243] gi|52423487|gb|AAU47057.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|76584126|gb|ABA53600.1| two component response regulator [Burkholderia pseudomallei 1710b] gi|124290911|gb|ABN00181.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126223134|gb|ABN86639.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126231479|gb|ABN94892.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|126240740|gb|ABO03852.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|147745108|gb|EDK52189.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|147750419|gb|EDK57489.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|148023611|gb|EDK82673.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|157811217|gb|EDO88387.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|157934461|gb|EDO90131.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|160695493|gb|EDP85463.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|169651120|gb|EDS83813.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|184215844|gb|EDU12825.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|217391839|gb|EEC31866.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|238520671|gb|EEP84129.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|243061632|gb|EES43818.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|254215286|gb|EET04671.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 219 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 10/168 (5%) Query: 55 GKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G+G L+ R +RA S VP+I ++ + + ++G DD + KP E+ ARV+ Sbjct: 57 GRG---LDFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVS 113 Query: 114 AIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ RR + N + G + V R G L E +LE L+ + G ++K Q Sbjct: 114 AVARRYSGNPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQ 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +Y DE V N +E H+S+LRK KLG + +++ R LGY + Sbjct: 174 LEERLYSFSDE-VGSNTIEVHVSRLRK----KLGAELIETVRGLGYRL 216 >gi|331266502|ref|YP_004326132.1| DNA-binding response regulator [Streptococcus oralis Uo5] gi|326683174|emb|CBZ00792.1| DNA-binding response regulator [Streptococcus oralis Uo5] Length = 227 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/220 (21%), Positives = 100/220 (45%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D AL++D + L G ++ +F++ Q + D I L GE Sbjct: 4 ILVIEDEALIRDEIVILLEKTGYQVDKLT--DFKDTSQQVLQYDTDLIILDLNLPGETGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +++ VP++ ++ L+ + G D+ + KP LAR+ I +R + Sbjct: 62 QICKNLKSKRSVPILVLTSREQLKDEIYALKLGADEYLTKPFKKERFLARIENILKRYEG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N E + + G LP+ + ++LE L+ V K ++ ++ Sbjct: 122 RQNLLEKDNFLLDRQTYTLYINGHSILLPQNQGKLLETLLVTNAPVVTKEELSMKLWN-T 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++EN ++ +I++L+K ++ V S R +GY ++ Sbjct: 181 TEFIDENALQVNIARLKKVMKQAGIALQVKSVRGIGYKLE 220 >gi|312129843|ref|YP_003997183.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] gi|311906389|gb|ADQ16830.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] Length = 230 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 7/153 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P+I ++ + ++ F+ G DD + KP RE+LAR+ +R ++ ++ Sbjct: 77 IPIIMLTALGETEDKIEGFERGADDYLVKPFDFRELLARINVFIKR-NAGAGASQENTLK 135 Query: 133 VFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 + + DG+ G L +E +LEYL+ N+GK V+K +I SA++ ++ Sbjct: 136 IANLVMDLDGKTVMRDGVKIDLTPKEFSLLEYLIKNKGKVVSKAEISSALWEPNNQQ-SL 194 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVVE +I+ LRKK+ + +K +GY I Sbjct: 195 NVVEVYINFLRKKIDKDFIPKLIHTKTGMGYII 227 >gi|119510916|ref|ZP_01630039.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119464444|gb|EAW45358.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 230 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 21/225 (9%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L + Y+ + DG G+ L+ S E AI +++ K LEL + + Sbjct: 18 RTLTQQKYLVDWVIDGDEAWGY--------LEDSWTEYTLAIFDWMLPKISG-LELCKRL 68 Query: 68 RAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118 R H + +P++ ++ S++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 69 RKHQNSLPILMLTAKDSMEDKVTGLDAGADDYLVKPFGMAELLARLRALQRRSPQFQPQK 128 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L V N + G V S VQ L +E ++LEY M + + + QI + ++ Sbjct: 129 LTVGNLTLDYGNNVVSSQDAVGNVQE--ITLTYKEFQLLEYFMKHPNQILTTEQIRNQLW 186 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + E V NVV + + LR+KL N + +++ LGY ++N Sbjct: 187 EVNAEPV-SNVVAAQMRLLRRKLVNGGCENMIETLHGLGYRFNFN 230 >gi|160878862|ref|YP_001557830.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427528|gb|ABX41091.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 228 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 26/171 (15%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124 IR S P+I +S + F+ G+DD V KP +EI+ RV AI RR + V+N Sbjct: 67 IRKKSNTPVIMLSARGEEYDKVLGFELGIDDYVVKPFSSKEIMLRVNAILRRTQKSVANF 126 Query: 125 RAETGPI--------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 +E G I +VF DG VQ + P +E +L +L+ N+ K V + Sbjct: 127 DSEEGHIIFRKEGFEADMTAYKVFIDG----VQANMAP---KEYDLLFFLIRNKNKAVPR 179 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I + ++G FD ++ +++H+ LR+ L F + + R LGY + Sbjct: 180 ENILTEVWG-FDYCGDDRTLDTHMKLLRRSLGPYANF--ITTLRGLGYRFE 227 >gi|193066637|ref|ZP_03047672.1| heavy metal response regulator [Escherichia coli E22] gi|293446346|ref|ZP_06662768.1| transcriptional regulatory protein YedW [Escherichia coli B088] gi|298381094|ref|ZP_06990693.1| two-component system response regulator YedW [Escherichia coli FVEC1302] gi|81244982|gb|ABB65690.1| putative 2-component transcriptional regulator [Shigella boydii Sb227] gi|192925712|gb|EDV80371.1| heavy metal response regulator [Escherichia coli E22] gi|291323176|gb|EFE62604.1| transcriptional regulatory protein YedW [Escherichia coli B088] gi|298278536|gb|EFI20050.1| two-component system response regulator YedW [Escherichia coli FVEC1302] Length = 239 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 58 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 117 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 118 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 177 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 178 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 233 >gi|238797563|ref|ZP_04641060.1| Transcriptional regulatory protein basR/pmrA [Yersinia mollaretii ATCC 43969] gi|238718560|gb|EEQ10379.1| Transcriptional regulatory protein basR/pmrA [Yersinia mollaretii ATCC 43969] Length = 220 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 53/221 (23%), Positives = 108/221 (48%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L++ G ++G + + + + L S++ + ++ L + VL Sbjct: 3 LLIVEDDELLQRGIAMALTNEGYACDCTGTAAEAQSLLQSSQYSMVILDLGLPDQDGAVL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L + R H +P++ ++ +L+ +D D+G DD + KP E+LARV A+ RR + Sbjct: 63 -LRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S+N + + + + +Q + + +E IL L+ G+ V + + +Y Sbjct: 122 QSDNLVQQDDLSLNLSTQQVCLQDQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLYTW 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D+ + N +E HI LR+ KLG D + + R +GY ++ Sbjct: 182 NDD-LGSNTLEVHIHNLRR----KLGKDRIRTVRGIGYRLE 217 >gi|325970799|ref|YP_004246990.1| transcriptional regulator [Spirochaeta sp. Buddy] gi|324026037|gb|ADY12796.1| two component transcriptional regulator, winged helix family [Spirochaeta sp. Buddy] Length = 239 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 33/235 (14%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSA------IEAFLI 54 + +++D ++++G G ++ GF +L+ SARE + I+ ++ Sbjct: 11 LIYIVEDHEVIREGVRQYLELSGYAVRGFANLK-------SAREAFATQTPSLLIQDVML 63 Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G+ + ++ + P+I ++ + F+ G DD ++KP +E++ RV A Sbjct: 64 PDGDG-FAFVKQLKEKTDCPVIFMTARTEESDRILGFELGADDYISKPFSPKELVLRVQA 122 Query: 115 IYRRLK-----VSNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGK 166 + RR + +S+ G + D +D + GE+ L E RILEYL+ N Sbjct: 123 VLRRYRNGSYEISDGLLYVGEHWMSFDEQDHRLVVDDGEIV-LTAAEWRILEYLVQNSHH 181 Query: 167 RVAKTQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 V+++QI FD +VE E VV++HI K +R+KLG P +++ R GY Sbjct: 182 LVSRSQILEEC---FDYSVESYERVVDTHI----KNIRSKLGDGPWIETVRGYGY 229 >gi|300857676|ref|YP_003782659.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685130|gb|ADK28052.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302205415|gb|ADL09757.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis C231] gi|302329969|gb|ADL20163.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis 1002] gi|308275653|gb|ADO25552.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis I19] Length = 231 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 97/204 (47%), Gaps = 21/204 (10%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ + DG + +EFE + D+ + L+ G ++ + +R Sbjct: 21 LRKEGFEVVVAGDGPT----ALVEFE-------KNDIDIVLLDLMLPGMSGTDVCKRLRK 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRA 126 S VP+I ++ S + + G DD V KP RE++AR+ A+ RR +V++ Sbjct: 70 VSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGEPQVADYEE 129 Query: 127 E------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E G +R+ + V GE +P +E +LEYLM N G+ + + Q+ I+G Sbjct: 130 EGDDILGGGRVRMDVERHTVTVAGENISMPLKEFDLLEYLMRNSGRVLTRGQLIDRIWG- 188 Query: 181 FDEAVEENVVESHISKLRKKLRNK 204 D + ++ H+ +LR K+ + Sbjct: 189 ADYVGDTKTLDVHVKRLRSKIEEE 212 >gi|255321050|ref|ZP_05362220.1| DNA-binding response regulator [Acinetobacter radioresistens SK82] gi|262379549|ref|ZP_06072705.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255301874|gb|EET81121.1| DNA-binding response regulator [Acinetobacter radioresistens SK82] gi|262299006|gb|EEY86919.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 219 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 7/161 (4%) Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R H +Q P+I ++ S+ ++ D G +D + KP E+ AR+ + R L+ Sbjct: 61 EILKTLRQHQAQTPVIFLTARDSISDRVEGLDLGANDYLVKPFSLEELSARIRSQMRNLQ 120 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ I + + + +GE L RE +IL LM + V + Q+ +IY Sbjct: 121 AGQSQTLIWNNICLDPKAKTVQQEGESRDLTAREFQILYKLMQHPNHVVTREQLEESIYA 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE VE N +E +I +LRK KLG + + R LGY + Sbjct: 181 WGDE-VESNAIEVYIYQLRK----KLGSQTIRTIRGLGYRM 216 >gi|171777476|ref|ZP_02919212.1| hypothetical protein STRINF_00039 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283254|gb|EDT48678.1| hypothetical protein STRINF_00039 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 225 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 2/160 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + +VP+I ++ L+ + D G DD + KP E+LAR+ R+ ++ Sbjct: 59 LKRVRQMGMEVPIIFLTAKSQLEDRVLGLDLGADDYMIKPFEAEELLARIRLRTRQSSIT 118 Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N + G + + D R+ V L +E ++E + N K + K Q+ ++G Sbjct: 119 QVNHLKFGNLILNLDTRELSVAEREVKLSNKEFLLMETFLRNSKKIIPKNQLILKVWGPL 178 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE+ + N +E IS LRKKLR + + + +GYS++ Sbjct: 179 DES-DYNQLEVFISFLRKKLRFLAASAVIKTTKGVGYSLE 217 >gi|317404641|gb|EFV85039.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 220 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 12/152 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----T 128 +P++ ++ + + D+G DD + KP H E+LARV A+ RR +N A Sbjct: 73 MPVLILTARSNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRR---HSNHASAQWRC 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 GP+ + + V G+ L E ++L LM + G+ V++ + IY D + N Sbjct: 130 GPLMLDTRLARATVDGQPLNLTSHEFKVLAVLMQHAGEVVSRGDLIEHIYA-QDHDRDSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ I +LRKKL D +++ R LGY + Sbjct: 189 TIDVFIGRLRKKLPA----DTIETVRGLGYRL 216 >gi|303234315|ref|ZP_07320955.1| putative subtilin biosynthesis regulatory protein SpaR [Finegoldia magna BVS033A4] gi|302494568|gb|EFL54334.1| putative subtilin biosynthesis regulatory protein SpaR [Finegoldia magna BVS033A4] Length = 220 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 3/159 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 EL R +R P++ ++ + + G DD + KP E+++RV A RR Sbjct: 61 FELCRNVREKVDCPILFLTAKSTEADVAEGLAIGGDDYIRKPFTPLELVSRVKAHLRREE 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +V ++ G IR + ++ +++GE + E I E L ++G+ ++ I + G Sbjct: 121 RVHHSYLSFGDIRFLLNAKEIQIKGETIKFTKMEYEICELLARHKGQVFSREHILEQVGG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + E+ +VE HI +RKK + DP+ + +GY Sbjct: 181 FWTESESAAIVE-HIKNIRKKF-STYQLDPIKTIWGVGY 217 >gi|293396538|ref|ZP_06640814.1| DNA-binding response regulator [Serratia odorifera DSM 4582] gi|291420802|gb|EFE94055.1| DNA-binding response regulator [Serratia odorifera DSM 4582] Length = 204 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 3/167 (1%) Query: 57 GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 GE + L R RAH ++P++ ++ S Q + ++G DD V KP H E++AR+ A+ Sbjct: 37 GEDGMSLIRRWRAHQVKLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQAL 96 Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR +++ P ++ R+ V L E I+E L+ N GK V+K + Sbjct: 97 MRRNSGLASQVIVLPPFQIDLSRRELSVNDRPIKLTAFEYTIIETLIRNAGKVVSKDSLM 156 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +Y E E + ++ + +LRKKL+ + + + + R GY D Sbjct: 157 LQLYP-DAELRESHTIDVLMGRLRKKLQAEYPQEVITTVRGQGYRFD 202 >gi|225570249|ref|ZP_03779274.1| hypothetical protein CLOHYLEM_06345 [Clostridium hylemonae DSM 15053] gi|225161044|gb|EEG73663.1| hypothetical protein CLOHYLEM_06345 [Clostridium hylemonae DSM 15053] Length = 221 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 14/204 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNS---LEFEEWLQ-SSAREDVSAIEAFLI-GKG 57 ++ DDR L + IAL + EGF + + E L+ + R D+ ++ L G G Sbjct: 5 IIEDDRLLNRALNIAL------NKEGFETNCVYTYREGLRMAQERNDLLLLDISLPDGNG 58 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R I +P I ++ L FD G DD V KP + +L RV A+ R Sbjct: 59 ---IELYREILKTRSIPAIFLTARDEEADMLTAFDEGADDYVVKPFPMKVLLKRVEAVLR 115 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R + R + ++ + ++ L +E R+LE++M +RG+ ++K I + Sbjct: 116 RGADQSGRLSWEGLCLYQKAKRVCLENREIQLTPKEYRLLEFMMEHRGQVLSKESILEHV 175 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 + + + V +N V +++L+KK+ Sbjct: 176 WDIDGQFVGDNTVSVTVNRLKKKI 199 >gi|170768311|ref|ZP_02902764.1| DNA-binding response regulator PhoP [Escherichia albertii TW07627] gi|170123077|gb|EDS92008.1| DNA-binding response regulator PhoP [Escherichia albertii TW07627] Length = 223 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 105/218 (48%), Gaps = 5/218 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ + ++ + D++ ++ L E L Sbjct: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGL--PDEDGLS 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R++ +P++ ++ S Q ++ +G DD V KP H E++AR+ A+ RR Sbjct: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ + EV L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVISLPPFQVDLSRRELSINEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E E + ++ + +LRKK++ + + + + R GY Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHEVITTVRGQGY 218 >gi|149916162|ref|ZP_01904684.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Roseobacter sp. AzwK-3b] gi|149810017|gb|EDM69866.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Roseobacter sp. AzwK-3b] Length = 219 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPI 131 P+I ++ + ++ ++G DD + KP E+ AR+ ++ RR + N GPI Sbjct: 73 TPVIILTALDQVTDRIEGLNAGADDYLVKPFDLAELSARIGSVARRYCGNPNPIISHGPI 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V G+ L RE + E +A G+ ++K Q+ +Y F VE N +E Sbjct: 133 DVDLAAHSVHRDGKPVQLTAREWALFEAFLARPGQLLSKAQLEEKLYE-FGAEVESNTIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 H+S+LRK KLG ++++R +GY + Sbjct: 192 VHVSRLRK----KLGAGIIETERGMGYRL 216 >gi|302552564|ref|ZP_07304906.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302470182|gb|EFL33275.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 268 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 20/207 (9%) Query: 31 SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78 +L +E W SA + AI++ ++ + + L R+ R VP++ + Sbjct: 60 ALRYEGWQIRSAGDGQGAIQSARDFRPDAVVLDMMLPDMDGLAVLGRLRRELPDVPVLFL 119 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134 + +++ + +G DD V KP E++AR+ + RR ++ R+E+ G + + Sbjct: 120 TAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAADRRSESMLVVGDLTLD 179 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D + G+ L E +L +LM N + ++K QI ++ +D + NVVE +I Sbjct: 180 EDSHEVTRAGDNIHLTATEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 238 Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220 S LR+K+ G +P + ++R GY I Sbjct: 239 SYLRRKI--DAGREPMIHTRRGAGYLI 263 >gi|297243563|ref|ZP_06927494.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis AMD] gi|296888314|gb|EFH27055.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis AMD] Length = 246 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 14/169 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI + +VP++ ++ Q + G DD V KP E++AR+ AI RR + + Sbjct: 71 RIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEPDE 130 Query: 125 RA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + D D G L E ++L YLM N G+ ++K+QI + ++ + Sbjct: 131 ETHIIKVADLEINEDSHDVTRCGMPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ-Y 189 Query: 182 DEAVEENVVESHISKLRKKL----------RNKLGFDPVDSKRFLGYSI 220 D + +VES+IS LRKK+ + + +++KR +GY I Sbjct: 190 DWGGDAAIVESYISYLRKKIDGIEITDDSGKPQKVVPLIETKRGIGYMI 238 >gi|296501980|ref|YP_003663680.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296323032|gb|ADH05960.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 223 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 63 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYT 122 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 123 KQEQQEEIQFGPILINEKSRRIEAGGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 183 G-YDYAGSTRTVDTHVKTMRLKL 204 >gi|300777987|ref|ZP_07087845.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300503497|gb|EFK34637.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 224 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 4/149 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G K+LE + + Q +I IS +L ++ G DD + KP H E++ARV + Sbjct: 57 GNGLKILE--ELKKQQKQDGVIIISAKNALDDKIEGLKLGADDYLTKPFHLSELMARVYS 114 Query: 115 IYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR + S+N + +++ + V E L ++E +L Y + N+ K ++K+ + Sbjct: 115 VIRRKQFSSSNVVKQNELQIDLLAKTVTVNNETISLTKKEFDLLIYFIGNKNKVISKSTL 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKL 201 + G L D + V +H+ L+KKL Sbjct: 175 AEHLSGDLADMLDNHDFVYAHVKNLKKKL 203 >gi|261418005|ref|YP_003251687.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297529673|ref|YP_003670948.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|319767181|ref|YP_004132682.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261374462|gb|ACX77205.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297252925|gb|ADI26371.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|317112047|gb|ADU94539.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 224 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 17/162 (10%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IRA P++ I+ S+ + D+G DD + KP E+LAR+ A++RR+ Sbjct: 62 MEVCRRIRAAKSTPIMMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVH 121 Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + F D R + E L +RE +L M N + + + Sbjct: 122 PEAN----AQVLTFKDLVVDVQARTVKKGDEFIELTKREYDLLVAFMQNINVVLTRDALL 177 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 ++G FD VE NVV+ ++ LR+KL D D +R++ Sbjct: 178 DKVWG-FDAEVETNVVDVYVRYLRQKL------DEHDKERYI 212 >gi|239825816|ref|YP_002948440.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239806109|gb|ACS23174.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 233 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 10/169 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +EL +IR P+I +S + + G DD ++KP +E+ AR+ RR + Sbjct: 63 MELCSMIRDRVDCPIIFVSAKTLEEDKIQALSVGGDDYISKPFSLKELKARIDCHLRREE 122 Query: 121 V--SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 SN R + D EV +G L ++E I++ LM N+ +K +IF + Sbjct: 123 RIRSNERQLLSSKNITIDLLANEVFCKGVKLHLTKKEYEIIKLLMLNKNMVFSKERIFES 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDWN 223 ++GL E+ E V ES I +RKK+R+ DP S K G W+ Sbjct: 183 VWGLDSESQLETVTES-IKNIRKKIRS---LDPEHSYIKTLYGLGYKWD 227 >gi|160879822|ref|YP_001558790.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428488|gb|ABX42051.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 224 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 4/159 (2%) Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E I+R+ +++P++ +S F G+DD + KP+ E++ R+ A+ RR K Sbjct: 62 EFTEILRSVQNELPILMVSAKQLPADRKKGFQVGIDDFMTKPVDAEEMVLRIKALLRRAK 121 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ R G + + D +GE LP++E ++L L++ GK + Q+ I+G Sbjct: 122 ITSERKIMIGNVVLDEDSLSVTREGETQVLPQKEFQLLFKLLSYPGKIFTRIQLMDEIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ E V H+ +LR++ F +DS R LGY Sbjct: 182 TESDSGWETVT-VHVGRLRRRFEGWPEFQ-IDSVRGLGY 218 >gi|49081814|gb|AAT50307.1| PA3077 [synthetic construct] Length = 224 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 2/150 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 Q P++ ++ +LQ LD FD+G DD + KP E+L R+ A+ RR R + + Sbjct: 74 QTPVLMLTALDTLQDKLDGFDAGADDYLLKPFELPELLVRLQALSRRRSGQAQRLQVDDL 133 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + D R G L +ILE LM V + Q+ +++G DE E N + Sbjct: 134 VMDLDSRQASRGGTPLALSPTAWKILECLMRASPALVTREQLGRSVWG--DEPPESNTLN 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 H+ LR + + + +G+ ++ Sbjct: 192 VHMHHLRSTVDKGFATPLIHTLHSVGFQLE 221 >gi|295397798|ref|ZP_06807865.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563] gi|294973967|gb|EFG49727.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563] Length = 358 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 97/207 (46%), Gaps = 9/207 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + D A G + F +L E L+ I L+ G L Sbjct: 134 ILIVDDEASILDIVEAYLSAKGYQV--FRALSGNEALKKVDIVQPDLIVLDLMLPGLSGL 191 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP+I ++ + + L+ G DD + KP +E++ARV + RR++ Sbjct: 192 EVCKKIRDSSTVPIIMLTAKTAEKDILEGLSLGADDYITKPFSPKELVARVETVLRRVQP 251 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E G + ++ D + QGE L E +L L ++ + ++ Q+ A+ Sbjct: 252 EYREEKWSFEEGLLVIYPDRKQVFKQGEEIILTPTEYALLALLASHPKRIFSREQLLDAV 311 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRN 203 GL FD + V+++HI +R+K+ + Sbjct: 312 KGLDFDGT--DRVIDTHIKNIRQKIED 336 >gi|294084834|ref|YP_003551594.1| winged helix family two component transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292664409|gb|ADE39510.1| two component transcriptional regulator, winged helix family [Candidatus Puniceispirillum marinum IMCC1322] Length = 230 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 20/229 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-AIEAFLIGKGEKV 60 L+DD + + +G ++ +N + E LQ AR+ V A+ + + + V Sbjct: 5 IALVDDDQNILTSVSLMLESEGFDVDCYN--DGEAALQGMARQPVELAVLDIKMPRMDGV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + IR +SQ+P+I ++ F G DD + KP R +LAR+ A+ RR Sbjct: 63 -ELLQKIRKNSQLPVIFLTSKDDELDEALGFGMGADDYITKPFSQRLLLARIRAVLRR-- 119 Query: 121 VSNNRAETGPIRVFSDG---RDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + +T V G DP+ +GE L E IL+ L + G + Q Sbjct: 120 ATEGVMDTAGPNVIHQGDLVMDPDRHLCSWKGEEVKLTVTEFLILQALASRPGMVKNRDQ 179 Query: 173 IFSAIYG--LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + A YG +F +++ ++SHI +LR+K+R + FD +++ +GY Sbjct: 180 LMDAAYGESIF---LDDRTIDSHIKRLRRKIRAHDNAFDGIETLYGIGY 225 >gi|255523653|ref|ZP_05390620.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255512708|gb|EET88981.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 225 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 16/166 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 I Q+P+I +S L T L+ G DD + KP ++ E++ R+ A+ RR+ N+ Sbjct: 67 INEEFQIPIICVSAKDDLGTKLELIRDGADDYITKPFNNEELIVRIGAVLRRM----NKG 122 Query: 127 ET-GPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 T +F S+ + E L +E ILE L+++ K K IF ++ Sbjct: 123 RTIDKSNIFGFKDLILDSENHIVTINDEPIELTVKEYSILELLISSPRKVFTKQNIFESV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + + ++E VV H+S LR KL++ G + + + +GY + N Sbjct: 183 WS-EEYIMDERVVTVHVSNLRNKLKH--GEEYIKTVWGIGYKMQDN 225 >gi|188493946|ref|ZP_03001216.1| heavy metal response regulator [Escherichia coli 53638] gi|193071320|ref|ZP_03052238.1| heavy metal response regulator [Escherichia coli E110019] gi|300899234|ref|ZP_07117505.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1] gi|300901970|ref|ZP_07119998.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1] gi|301304238|ref|ZP_07210353.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1] gi|331683515|ref|ZP_08384116.1| transcriptional activator protein CopR [Escherichia coli H299] gi|188489145|gb|EDU64248.1| heavy metal response regulator [Escherichia coli 53638] gi|192955362|gb|EDV85847.1| heavy metal response regulator [Escherichia coli E110019] gi|300357145|gb|EFJ73015.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1] gi|300405938|gb|EFJ89476.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1] gi|300840495|gb|EFK68255.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1] gi|315253295|gb|EFU33263.1| transcriptional activator protein Irlr [Escherichia coli MS 85-1] gi|331079730|gb|EGI50927.1| transcriptional activator protein CopR [Escherichia coli H299] Length = 260 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHTLNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254 >gi|115376427|ref|ZP_01463663.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca DW4/3-1] gi|310823253|ref|YP_003955611.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|115366559|gb|EAU65558.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca DW4/3-1] gi|309396325|gb|ADO73784.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] Length = 226 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 104/226 (46%), Gaps = 20/226 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSL-------EGFNSLEFEEWLQSSAREDVSAIEAFLI 54 +LIDD + + G +G+S+ G +LE + D ++ + Sbjct: 5 VLLIDDDTRMYELLAQYLGQNGISVAHAPDGGRGLAALEGSPY-------DAVLLDVMM- 56 Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G LE+ + IRA +QVP++ ++ + + G DD + KP RE+LAR+ A Sbjct: 57 -PGMDGLEVCKRIRAKTQVPILMLTARGDETDRVVGLELGADDYLAKPFSPRELLARLRA 115 Query: 115 IYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + RR + + +R E + + GR+ +V G L E +L L+ G+ + + Sbjct: 116 VLRRAQPTAVADRMEAQGVSIDVAGREVKVNGRPVELTGLEFELLVALVRRAGRVIPRDA 175 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + G D V E V+ HIS LR+KL ++ G + + R +GY Sbjct: 176 LLGE-AGRSDTVVGERTVDVHISHLRQKLGDE-GGRLIKTVRGVGY 219 >gi|160877446|ref|YP_001556762.1| two component transcriptional regulator [Shewanella baltica OS195] gi|217975283|ref|YP_002360034.1| winged helix family two component transcriptional regulator [Shewanella baltica OS223] gi|304412081|ref|ZP_07393691.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307305976|ref|ZP_07585722.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|160862968|gb|ABX51502.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|217500418|gb|ACK48611.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] gi|304349631|gb|EFM14039.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306911469|gb|EFN41895.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|315269648|gb|ADT96501.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 231 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 8/151 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TG 129 P++ ++ S Q ++ D+G DD + KP H +E++AR+ A+ RR S +A G Sbjct: 74 PILILTARDSWQDKVEGLDAGADDYLTKPFHPQELVARLKALIRR---SAGKASPLIYNG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P + + + E+ L E ++ E+ M ++G+ +KT + IY D ++ NV Sbjct: 131 PFSLNTSSLEVRKGEELVNLSGSEYKLFEFFMLHQGEVKSKTVLTEHIYDQ-DFDLDSNV 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E I +LRKKL ++ +++ R GY + Sbjct: 190 IEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220 >gi|332359755|gb|EGJ37570.1| DNA-binding response regulator [Streptococcus sanguinis SK49] Length = 224 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K + N G + Sbjct: 73 TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRAGKFNENTLSYGEV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V V + L +E +L Y + N+ + KTQIF ++G FD +VVE Sbjct: 133 SVNLSTNSTLVADKEVELLGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTVSVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + R +GY Sbjct: 192 VYVSKIRKKLKGTAFAKNLHTLRSVGY 218 >gi|332076078|gb|EGI86544.1| transcriptional regulatory family protein [Streptococcus pneumoniae GA41301] Length = 159 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K + N G I V +V+ L Sbjct: 26 FELGADDYLTKPFYLEELKMRIQALLKRSGKFNENTLTYGNIVVNLSTNTVKVEDTPVEL 85 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + KTQIF ++G FD +VVE ++SK+RKKL+ + Sbjct: 86 LGKEFDLLVYFLQNQNVILPKTQIFDRLWG-FDSDTTISVVEVYVSKVRKKLKGTTFAEN 144 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 145 LQTLRSVGY 153 >gi|317402892|gb|EFV83434.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 229 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA +S +P++ ++ S++ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLRRLRARNSALPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRG 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + GR V + L RE +LE L+ G+ V+KTQ+ + Sbjct: 120 AGGGATLLKHGRLVFDQTGRVATVDDQTLDLSAREVSLLEILLTRSGRMVSKTQLVDHLC 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E ++ +LRKKL G V + R LGY ++ Sbjct: 180 E-WGEEVSTNAIEVYVHRLRKKLEPS-GVKIV-TVRGLGYCLE 219 >gi|229082085|ref|ZP_04214567.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228701215|gb|EEL53719.1| DNA-binding response regulator [Bacillus cereus Rock4-2] Length = 194 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 11/165 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 28 RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 87 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S E +++F + + E L ++E + E L++ + ++ + +A++ Sbjct: 88 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 147 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 DE+ VEEN + +I++LRKK N+LG + +++ R LGY + Sbjct: 148 D--DESFVEENTLNVNITRLRKKF-NELGIENSIETVRGLGYRFN 189 >gi|193077836|gb|ABO12711.2| putative two-component response regulator [Acinetobacter baumannii ATCC 17978] Length = 220 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GEKVL R VP+I I+ S+ ++ D G +D + KP E+ AR+ A Sbjct: 59 GEKVLTTIR--HKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQL 116 Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+ +S T G +++ + + G+ L +E +IL LM + + + Q+ Sbjct: 117 RKQTLSQQSILTWGDLQLDTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A+Y + E +E N +E I +LRK K+G + + R LGY + Sbjct: 177 ALYA-WGEEIESNAIEVFIYQLRK----KIGSSSIKTIRGLGYRM 216 >gi|187934991|ref|YP_001884341.1| DNA-binding response regulator [Clostridium botulinum B str. Eklund 17B] gi|187723144|gb|ACD24365.1| DNA-binding response regulator [Clostridium botulinum B str. Eklund 17B] Length = 227 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 5/137 (3%) Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVS-NNRAETGPIRVFSDGRDPEVQGE 145 L F+ G +D + KP E+ AR+ AI + + K+ +N E +++ + + E Sbjct: 88 LKAFNLGANDYLTKPFFMEELKARIIAILKSMGKIKKSNILEFKNMQIDMKVKKVYINNE 147 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 L + ++LEYL+ N+G + K QIF I G +A E ++E +IS+LRK+L +K Sbjct: 148 ELELNEKLYKLLEYLVINKGVLLFKEQIFDNICGYNSDAATE-IIEVYISRLRKQL-SKY 205 Query: 206 GFDP-VDSKRFLGYSID 221 +D + +KR +GY +D Sbjct: 206 DYDKYLVTKRGMGYLLD 222 >gi|127513276|ref|YP_001094473.1| two component transcriptional regulator [Shewanella loihica PV-4] gi|126638571|gb|ABO24214.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 224 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 3/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRA 126 +A + P++ ++ + Q ++ ++G DD + KP E++AR+ A+ RR + Sbjct: 68 KAELKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPQI 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 +GP+ + + + + E +ILEYLM + + VAK ++ IYG D+ + Sbjct: 128 TSGPLELDLAAKQVTLDQSPMEVTAFEYQILEYLMRHCHEVVAKQRLLDVIYG--DKEGD 185 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 N +E +S+LRKKL +P+ + R GY + Sbjct: 186 PNTIEVMVSRLRKKLTKGGLENPIATIRGQGYKFN 220 >gi|296102850|ref|YP_003612996.1| DNA-binding transcriptional regulator PhoP [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057309|gb|ADF62047.1| DNA-binding transcriptional regulator PhoP [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 223 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%) Query: 58 EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 E L L R R+H +P++ ++ Q ++ +G DD V KP H E+ AR+ A+ Sbjct: 57 EDGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALL 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR +++ P +V R+ + EV L E I+E L+ N GK V+K + Sbjct: 117 RRNSGLASQVISLPPFQVDLSRREFSINNEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y E E + ++ + +LRKK++ + D + + R GY Sbjct: 177 QLYP-DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGY 218 >gi|226312462|ref|YP_002772356.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095410|dbj|BAH43852.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 217 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 4/149 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P+I ++ S+ + +GVDD + KP E+LAR+ + R +N Sbjct: 72 IPVIFLTAKSSVTDKVYGLKAGVDDYMTKPFEGIELLARIENVLRHYNKKSNIINFKDTE 131 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 V+ + + GE+ L +E +L +L+ N+ + + +I I+G +D E +++ Sbjct: 132 VYLEEMKVKKNGEMIELTLKEFELLVFLVQNKNIVLTREKIIEKIWG-YDYVGETRTIDN 190 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221 HI KLRKKL K D + + LGY ++ Sbjct: 191 HIQKLRKKLGWK---DEIKTVFKLGYRLE 216 >gi|255279876|ref|ZP_05344431.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM 14469] gi|255269649|gb|EET62854.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM 14469] Length = 246 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 94/199 (47%), Gaps = 15/199 (7%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRI 66 R L K+GY+ DG + + L + D++ ++ L + G ++ R Sbjct: 36 RELEKNGYMVECCSDGETAMFYA-------LNTDYGYDIAIVDRMLPVVDGLTIIRAMR- 87 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R + Q+P+I I+ +L +D D G DD + KP H RE+LARV A+ RR + A Sbjct: 88 -RKNIQIPVIIITGMSALDDRVDGLDGGADDYLVKPFHIRELLARVRALTRRPHQMQD-A 145 Query: 127 E---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E G +R + R + L +E +L LM ++ Q+ ++G D Sbjct: 146 ELLTCGDLRFDTSTRTLQCSQRKVALTAKEAELLGTLMRQPEAVFSREQLVLKVWG-SDS 204 Query: 184 AVEENVVESHISKLRKKLR 202 +E V+++IS LR++LR Sbjct: 205 DIEPGNVDNYISFLRRRLR 223 >gi|218508024|ref|ZP_03505902.1| two component transcriptional regulator, winged helix family protein [Rhizobium etli Brasil 5] Length = 232 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 12/151 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE + +P + R P+I ++ + ++ D G DD + KP E++AR+ A+ Sbjct: 57 GEGLRFIPELRRTGKDTPIIVLTALNEPKERVEGLDLGADDYLGKPFLVEELMARLRAVL 116 Query: 117 RR------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR LK++ R P+ + V LPRRE +L L + K V + Sbjct: 117 RRPANLAELKITAGRMVIDPLHLSV-----TVDDAPLDLPRRELLVLVALAKRKEKTVLR 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + +A+Y ++E ++ N +++HIS+LR +L Sbjct: 172 ATLEAAVYN-YEEEIQSNALDAHISRLRTRL 201 >gi|297200795|ref|ZP_06918192.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197712366|gb|EDY56400.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 269 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 20/207 (9%) Query: 31 SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78 +L +E W SA + A++ ++ + + L R+ R VP++ + Sbjct: 61 ALRYEGWQIRSAGDGTGAVQTAREFRPDAVVLDMMLPDMDGLAVLGRLRRELPDVPVLFL 120 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134 + +++ + +G DD V KP E++AR+ + RR ++ R+++ G + + Sbjct: 121 TAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAADRRSDSVLVVGDLTLD 180 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D + GE L E +L +LM N + ++K QI ++ +D + NVVE +I Sbjct: 181 EDSHEVSRAGENIHLTATEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 239 Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220 S LR+K+ G +P + ++R GY I Sbjct: 240 SYLRRKI--DAGREPMIHTRRGAGYLI 264 >gi|86160425|ref|YP_467210.1| two component transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85776936|gb|ABC83773.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-C] Length = 230 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 6/133 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAET-GPIRVFSDGRDPEVQGEVF 147 F+ G DD V KP RE++ R+ A+ RR + S+ E+ GPIRV D V G Sbjct: 94 FELGADDYVTKPFSVRELVLRLKAVLRRSAARPSDRPPESVGPIRVDVDAHRAYVDGAEV 153 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E ++L LM+ G+ ++ Q+ ++ + E VE V++H+ +LR+KL + G Sbjct: 154 VLTPLEFKLLTTLMSRLGRVQSREQLLEDVWEMSSE-VETRTVDTHVKRLREKLGS--GR 210 Query: 208 DPVDSKRFLGYSI 220 D +++ R +GY + Sbjct: 211 DLLETVRGIGYRL 223 >gi|23098049|ref|NP_691515.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776274|dbj|BAC12550.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 229 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 4/161 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ RA +Q P+I ++ + + D G +D + KP E+LARV R++ + Sbjct: 65 LRRVRRAENQTPIILLTARDEVHDKVSGLDLGANDYITKPFQIEELLARVRVHLRKVVQA 124 Query: 123 NNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N +T ++V + GE L RE +L L+ N+ + + Q+ +++G Sbjct: 125 ANDNQTLSVADLQVDLHAYEVTRNGEKIELTPREFNLLVCLLKNKNIVLTREQLIESVWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + NVV+ +I LR+K+ + + R +GY+I Sbjct: 185 -YDYFGDTNVVDVYIRYLRQKVDKNFEIPIIQTVRGVGYTI 224 >gi|115526874|ref|YP_783785.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520821|gb|ABJ08805.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 234 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 10/168 (5%) Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +RA Q+P+I ++ + +G DD + KP E+LARV + R Sbjct: 62 IELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121 Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + R T G + + D R G L E R+LE+ + + G+ ++ Q+ Sbjct: 122 R--AAPERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 180 LDGVWG-RDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226 >gi|15598273|ref|NP_251767.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107102626|ref|ZP_01366544.1| hypothetical protein PaerPA_01003690 [Pseudomonas aeruginosa PACS2] gi|116051074|ref|YP_790096.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218890723|ref|YP_002439587.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254236049|ref|ZP_04929372.1| hypothetical protein PACG_02006 [Pseudomonas aeruginosa C3719] gi|254241777|ref|ZP_04935099.1| hypothetical protein PA2G_02488 [Pseudomonas aeruginosa 2192] gi|296388425|ref|ZP_06877900.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313108385|ref|ZP_07794401.1| putative two-component system regulatory protein [Pseudomonas aeruginosa 39016] gi|9949184|gb|AAG06465.1|AE004731_13 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115586295|gb|ABJ12310.1| putative two-component system regulatory protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126167980|gb|EAZ53491.1| hypothetical protein PACG_02006 [Pseudomonas aeruginosa C3719] gi|126195155|gb|EAZ59218.1| hypothetical protein PA2G_02488 [Pseudomonas aeruginosa 2192] gi|218770946|emb|CAW26711.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] gi|310880903|gb|EFQ39497.1| putative two-component system regulatory protein [Pseudomonas aeruginosa 39016] Length = 223 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 2/150 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 Q P++ ++ +LQ LD FD+G DD + KP E+L R+ A+ RR R + + Sbjct: 74 QTPVLMLTALDTLQDKLDGFDAGADDYLLKPFELPELLVRLQALSRRRSGQAQRLQVDDL 133 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + D R G L +ILE LM V + Q+ +++G DE E N + Sbjct: 134 VMDLDSRQASRGGTPLALSPTAWKILECLMRASPALVTREQLGRSVWG--DEPPESNTLN 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 H+ LR + + + +G+ ++ Sbjct: 192 VHMHHLRSTVDKGFATPLIHTLHSVGFQLE 221 >gi|270292851|ref|ZP_06199062.1| DNA-binding response regulator [Streptococcus sp. M143] gi|270278830|gb|EFA24676.1| DNA-binding response regulator [Streptococcus sp. M143] Length = 227 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/220 (21%), Positives = 101/220 (45%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D AL++D + L G ++ +F++ Q + D I L GE Sbjct: 4 ILVIEDEALIRDEIVILLEKAGYQVDKLT--DFKDTSQQVLQYDTDLIILDLNLPGETGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +++ VP++ ++ L+ + G D+ + KP LAR+ I +R + Sbjct: 62 QICKNLKSKRSVPILVLTSREQLKDEIHALKLGADEYLTKPFKKERFLARIENILKRYEG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N E + + + G LP+ + ++LE L+ V K ++ ++ Sbjct: 122 RQNLLEKDNFLLDRNTYTLYINGHSILLPQNQGKLLETLLVATDSVVTKEELSMKLWN-T 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++EN ++ +I++L+K ++ V S R +GY ++ Sbjct: 181 TEFIDENALQVNIARLKKVMKQAGIALQVKSVRGIGYKLE 220 >gi|224823765|ref|ZP_03696874.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] gi|224604220|gb|EEG10394.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] Length = 227 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 34/225 (15%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI- 66 RAL GY+ DG++ + +L+ E + D+ ++ L LPR+ Sbjct: 18 RALTASGYVVDVIHDGLNAD--TALQTEPY-------DLVVLD----------LNLPRLS 58 Query: 67 -------IRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +RA H +P++ ++ + L ++ + G DD + KP E+ AR+ A+ RR Sbjct: 59 GKDVLVRLRARHQTLPVLILTAHGELSDKVEGLELGADDYLVKPFELVELEARLKALLRR 118 Query: 119 LKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +N G + R + E L RRE +LE LM G+ V + ++FS + Sbjct: 119 HQGHDNEPLRCGALVFDKQERLFRLGTERLVLTRREHAVLEALMRRAGQPVNRERLFSQV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 + L DE V +E +I +LRKKL G D + + R LGY ++ Sbjct: 179 FSLDDE-VNPEAIEIYIHRLRKKLE---GSDVAITTLRGLGYLLE 219 >gi|182701575|ref|ZP_02612281.2| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182670559|gb|EDT82533.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 288 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 82/159 (51%), Gaps = 6/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR HS+VP+I IS S + ++G DD + KP + +LA++ + RR+ S + Sbjct: 123 IRNHSKVPIIFISARDSDMDQVMAIENGGDDFITKPFSYYVLLAKIKGVLRRVYGSYAKN 182 Query: 127 ET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +T G + ++++ E +G L + E +L YL N K V++ + ++ Sbjct: 183 DTDFFKIGDLILYTNKSILEFKGRKTELSKNEFSLLLYLFKNINKIVSRDTLLEILWSDT 242 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +++N + ++++LRK+L + + +KR GY + Sbjct: 243 D-FIDDNTLSVNVTRLRKRLEEVGITNAIGTKRGQGYML 280 >gi|220920110|ref|YP_002495411.1| winged helix family two component transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219944716|gb|ACL55108.1| two component transcriptional regulator, winged helix family [Methylobacterium nodulans ORS 2060] Length = 225 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L R+ + P++ ++ + + D G DD + KP RE+ ARV A+ RR Sbjct: 63 LKRMRARRGRTPVLVLTARSEVDDRVGALDLGADDYLVKPFDFRELEARVRALLRRHSGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++N G + + R V G+ L RRE ++E L A G+ K ++ + F Sbjct: 123 ADNAIACGNLSLDRAARSASVGGQPLDLTRREWTLIEILAARPGRIFGKAELLDRL-STF 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +E EN +E +++LR+KL + G +P + + R LGY + Sbjct: 182 EEEPSENALEQIVARLRRKL-AQAGAEPEIRTLRGLGYQV 220 >gi|241662072|ref|YP_002980432.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12D] gi|309779746|ref|ZP_07674503.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] gi|240864099|gb|ACS61760.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12D] gi|308921485|gb|EFP67125.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA] Length = 235 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ + +P++ ++ S++ + D G DD + KP E+ ARV A+ RR Sbjct: 66 LKRLRSRGAMLPVLILTAADSVEERVKGLDLGADDYMAKPFALSELEARVRALVRRGTGG 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 GP+ GR + +V L RE +LE L+A G+ V+K Q+ + G + Sbjct: 126 GATLVRHGPLAFDQVGRIAYIHDQVVELSAREIGLLEILLARVGRLVSKEQLVDHLCG-W 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E V N +E +I +LRKK+ + G + + R LGY ++ Sbjct: 185 GEEVSNNAIEVYIHRLRKKIEVE-GI-RIATVRGLGYCLE 222 >gi|226195970|ref|ZP_03791556.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|225931863|gb|EEH27864.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] Length = 217 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 10/168 (5%) Query: 55 GKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G+G L+ R +RA S VP+I ++ + + ++G DD + KP E+ ARV+ Sbjct: 55 GRG---LDFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVS 111 Query: 114 AIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ RR + N + G + V R G L E +LE L+ + G ++K Q Sbjct: 112 AVARRYSGNPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQ 171 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +Y DE V N +E H+S+LRK KLG + +++ R LGY + Sbjct: 172 LEERLYSFSDE-VGSNTIEVHVSRLRK----KLGAELIETVRGLGYRL 214 >gi|330958496|gb|EGH58756.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. maculicola str. ES4326] Length = 226 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 3/167 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +++ + +R+ S VP+I I+ L D G DD + KP RE++ARV AI Sbjct: 62 GRDGMDICKELRSFSAVPIIMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR ++ +A G ++V G L E R+L + G+ ++ + Sbjct: 122 RRTSAADPQAAKG-LQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDR 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +Y V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 181 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 226 >gi|310780298|ref|YP_003968630.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309749621|gb|ADO84282.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 220 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 7/158 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LK 120 + R IR S++P+I ++ + L FD G D+ + KP + +LARV + +R K Sbjct: 63 ICRKIRKESKIPIIMLTARSTEDDELFGFDLGADEYITKPFSLKILLARVKVLLKRKDTK 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + G + + S E+ L +E +L ++ N+ +++ + + I+G Sbjct: 123 TEENSLKVGKLEIDSSSHRVIFFDEILDLTPKEYDMLLMMVENKDIAISRERFLNQIWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD + V++H+ +LRKKL+ K + + R +GY Sbjct: 182 FDYYGDLRTVDTHVKQLRKKLKGK----HIKTVRGVGY 215 >gi|308084106|gb|ADO13169.1| QseB [Edwardsiella tarda 080813] Length = 219 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 19/208 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEK 59 +LI+D L+ DG A G+S GF+ F + LQ + + +A ++ G Sbjct: 4 LLIEDDRLIGDGIKA-----GLSKMGFSLDWFTDGLQGMTALESAPYDAVILDLSLPGID 58 Query: 60 VLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ R R H++ P++ ++ +L+ + G DD + KP E+ AR+ A+ R Sbjct: 59 GLEILRRWREAGHAE-PVLILTARDALEQRVIGLQQGADDYLCKPFALIEVAARLQALIR 117 Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R ++ +A+T G + + + G PL +E +LE L+ N G+ + ++ I Sbjct: 118 R---NHGQAQTLLSHGAVSLDPLSLTATLDGASLPLKPKEFALLELLLRNAGRVLPRSLI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 +Y +D+ V N VE HI LR+KL Sbjct: 175 EEKLYS-WDDDVSSNAVEVHIHHLRRKL 201 >gi|325679592|ref|ZP_08159167.1| putative response regulator ArlR [Ruminococcus albus 8] gi|324108622|gb|EGC02863.1| putative response regulator ArlR [Ruminococcus albus 8] Length = 225 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 111/225 (49%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L +D + + +A+F + S++ ++ L+ +++ + + + I ++ + + Sbjct: 3 LLLAEDEKELSNALVAVFKHNNYSVDAVYDGLDAYDYIIGAEYDGI--ILDIMMPGMDGI 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L RI Q P++ ++ ++ + DSG DD + KP E+LAR+ A+ RR Sbjct: 61 TVLKRIRDKGIQTPVLLLTAKSQVEDRITGLDSGADDYLTKPFAMGELLARIRAMTRRKT 120 Query: 120 KVSNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + N + G + + + PE G L +E ++LE LM NR ++ ++ Sbjct: 121 EFAPNSLKVGNVTLDRERFVISTPE--GGEQKLGNKEFQVLEMLMLNRNVLISTERLMEK 178 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G FD E +VV +IS +RKKL + + R +GY+++ Sbjct: 179 IWG-FDAEAEISVVWVYISYIRKKLTAVKADIEIKASRGVGYTLE 222 >gi|229087374|ref|ZP_04219514.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228695942|gb|EEL48787.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 231 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 65 RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S E +++F + + E L ++E + E L++ + ++ + +A++ Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGAEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 DE+ VEEN + +I++LRKK N+LG + +++ R LGY Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223 >gi|325289148|ref|YP_004265329.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324964549|gb|ADY55328.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 228 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 5/154 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130 P++ ++ ++ + F G DD + KP + +E+LAR+ ++ RR + N Sbjct: 72 TPVLLLTAKDNIDDKVKGFKLGADDYLVKPFYRQELLARLESLIRRSGGALKENILNFRD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + R +++ E L R+ ILE+L+ N V K QIF I+G FD VV Sbjct: 132 LTLNLSNRTVKIRDEELTLAGRQFDILEFLIRNHNSIVTKKQIFDRIWG-FDSDTTITVV 190 Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223 + + S +RK L+ K G+D + + R +GY I N Sbjct: 191 DVYTSNIRKALQKK-GYDKYLKTVRGVGYMITGN 223 >gi|169335013|ref|ZP_02862206.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM 17244] gi|169257751|gb|EDS71717.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM 17244] Length = 233 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 108/238 (45%), Gaps = 29/238 (12%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE---EWLQSSAREDVSAIEA-FLIGK 56 + V+ DD+ +VK I L S EG+N E E L +E++ I ++ K Sbjct: 6 ILVVDDDKEIVKAINIYL------SNEGYNIFEAYDGYEALSVLEKEEIHLIVLDIMMPK 59 Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 + + + ++ R VP+I +S + + G DD V KP + E++ARV ++ Sbjct: 60 LDGIATITKV-REKQNVPVIFLSAKSEDTDKIIGLNIGADDYVTKPFNPLELIARVKSLI 118 Query: 117 RRLKVSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 RR + N +E TG + + D + V GE L E +IL+ LM+ K Sbjct: 119 RRYTILGNMSEKEADNILTTGGLSLNEDTTEVTVDGEEVKLTSTEFKILKLLMSRPNKVF 178 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221 + +I+ ++G + +N V H+ +R+K+ DP + K +GY I+ Sbjct: 179 SMEEIYEKVWGELS-YMTDNTVAVHVRHIREKIE----IDPKNPKYLKVVWGIGYKIE 231 >gi|170744715|ref|YP_001773370.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168198989|gb|ACA20936.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 234 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R IRA + +P+I ++ + +G DD + KP E+LARV A+ R Sbjct: 62 IELCRRIRARRETERLPVIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALLR 121 Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R K ++ + G I + +G L E ++LE+LM + G+ ++ Q+ Sbjct: 122 RAKPAHVAHLLVAGDIELDRVSHRVRREGRELHLGPTEFKLLEFLMQSPGRVFSREQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ HI +LRK + DP+ + R GYS D Sbjct: 182 GVWG-HDVYIDERTVDVHIGRLRKAINRPRRPDPIRTVRGSGYSFD 226 >gi|58337917|ref|YP_194502.1| response regulator [Lactobacillus acidophilus NCFM] gi|227902916|ref|ZP_04020721.1| response regulator [Lactobacillus acidophilus ATCC 4796] gi|58255234|gb|AAV43471.1| response regulator [Lactobacillus acidophilus NCFM] gi|227869332|gb|EEJ76753.1| response regulator [Lactobacillus acidophilus ATCC 4796] Length = 233 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 98/213 (46%), Gaps = 28/213 (13%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP--------RIIRAHSQVPLIGI 78 LEFE + A++ A+E F K +L LP R IR S+VP+I + Sbjct: 23 TELEFEGYQVIWAQDGKEALELFQKEKPTLILLDWMLPVYDGITVLRRIRKKSEVPIIML 82 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV-FSDG 137 + S D G+DD + KP E+ AR+ I RRL+ SN + E I F Sbjct: 83 TAKNSTSDISSALDQGLDDYITKPFEIEELFARIRVILRRLEKSNKQKENSTISFNFGPF 142 Query: 138 RDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + V+ E F L +E ++ LM + K ++ ++ ++G +D + N V+ Sbjct: 143 KIDLVKHEFFSNDEKIYLTPKEFALMTELMRDPEKVKSRDELLDVVWG-YDFVGQTNTVD 201 Query: 192 SHISKLRKKLRNKLGFDP----VDSKRFLGYSI 220 +I + +RNK+G DP + + R LGY + Sbjct: 202 VYI----RTIRNKIG-DPNKKLIQTVRGLGYCL 229 >gi|30264659|ref|NP_847036.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames] gi|47530129|ref|YP_021478.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames Ancestor'] gi|47564999|ref|ZP_00236042.1| alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus G9241] gi|49187479|ref|YP_030731.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Sterne] gi|49481343|ref|YP_038634.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140920|ref|YP_085909.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] gi|65321956|ref|ZP_00394915.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118479736|ref|YP_896887.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis str. Al Hakam] gi|165869762|ref|ZP_02214420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488] gi|167633879|ref|ZP_02392202.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442] gi|167638246|ref|ZP_02396524.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193] gi|170685683|ref|ZP_02876906.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465] gi|170705363|ref|ZP_02895827.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389] gi|177651214|ref|ZP_02934045.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174] gi|190569075|ref|ZP_03021975.1| DNA-binding response regulator PhoP [Bacillus anthracis Tsiankovskii-I] gi|196032842|ref|ZP_03100255.1| DNA-binding response regulator PhoP [Bacillus cereus W] gi|196040861|ref|ZP_03108159.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99] gi|196047480|ref|ZP_03114691.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108] gi|206977153|ref|ZP_03238052.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97] gi|217962068|ref|YP_002340638.1| DNA-binding response regulator PhoP [Bacillus cereus AH187] gi|218905816|ref|YP_002453650.1| DNA-binding response regulator PhoP [Bacillus cereus AH820] gi|225866566|ref|YP_002751944.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102] gi|227817373|ref|YP_002817382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC 684] gi|228917227|ref|ZP_04080784.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929636|ref|ZP_04092654.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935896|ref|ZP_04098706.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948313|ref|ZP_04110596.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228987836|ref|ZP_04147945.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229093685|ref|ZP_04224784.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|229124155|ref|ZP_04253347.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|229141314|ref|ZP_04269852.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|229158191|ref|ZP_04286258.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|229186844|ref|ZP_04313999.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|229604309|ref|YP_002868868.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248] gi|254687396|ref|ZP_05151252.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CNEVA-9066] gi|254724959|ref|ZP_05186742.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A1055] gi|254736696|ref|ZP_05194402.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Western North America USA6153] gi|254741733|ref|ZP_05199420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Kruger B] gi|254754669|ref|ZP_05206704.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Vollum] gi|254757501|ref|ZP_05209528.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Australia 94] gi|301056094|ref|YP_003794305.1| alkaline phosphatase synthesis response regulator [Bacillus anthracis CI] gi|30259334|gb|AAP28522.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames] gi|47505277|gb|AAT33953.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames Ancestor'] gi|47557785|gb|EAL16110.1| alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus G9241] gi|49181406|gb|AAT56782.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Sterne] gi|49332899|gb|AAT63545.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974389|gb|AAU15939.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] gi|118418961|gb|ABK87380.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis str. Al Hakam] gi|164714591|gb|EDR20110.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488] gi|167514063|gb|EDR89431.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193] gi|167530680|gb|EDR93382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442] gi|170129488|gb|EDS98351.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389] gi|170670147|gb|EDT20887.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465] gi|172083040|gb|EDT68102.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174] gi|190559857|gb|EDV13842.1| DNA-binding response regulator PhoP [Bacillus anthracis Tsiankovskii-I] gi|195994271|gb|EDX58226.1| DNA-binding response regulator PhoP [Bacillus cereus W] gi|196021695|gb|EDX60391.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108] gi|196028315|gb|EDX66924.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99] gi|206744638|gb|EDZ56046.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97] gi|217063985|gb|ACJ78235.1| DNA-binding response regulator PhoP [Bacillus cereus AH187] gi|218539540|gb|ACK91938.1| DNA-binding response regulator PhoP [Bacillus cereus AH820] gi|225790365|gb|ACO30582.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102] gi|227003433|gb|ACP13176.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC 684] gi|228596581|gb|EEK54246.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|228625149|gb|EEK81909.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|228642095|gb|EEK98388.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|228659457|gb|EEL15105.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|228689570|gb|EEL43378.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|228771884|gb|EEM20341.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228811300|gb|EEM57638.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823664|gb|EEM69486.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830023|gb|EEM75642.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842428|gb|EEM87519.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268717|gb|ACQ50354.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248] gi|300378263|gb|ADK07167.1| alkaline phosphatase synthesis response regulator [Bacillus cereus biovar anthracis str. CI] Length = 239 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 12/139 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----------GPIRVFSDGRDPEVQ 143 G DD + KP RE++ARV AI RR K+ T +++ + + Q Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVTETSDEESITIAELKILPEFYEAYFQ 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202 G L +E +L YL N+ + + + Q+ SA++ +D A + +V+ HIS LR K+ + Sbjct: 156 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQ 214 Query: 203 NKLGFDPVDSKRFLGYSID 221 N + + R LGY ++ Sbjct: 215 NTKKPTYIKTIRGLGYKLE 233 >gi|331083762|ref|ZP_08332871.1| hypothetical protein HMPREF0992_01795 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403187|gb|EGG82747.1| hypothetical protein HMPREF0992_01795 [Lachnospiraceae bacterium 6_1_63FAA] Length = 224 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 81/160 (50%), Gaps = 2/160 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLKV 121 L I + + +P++ ++ + ++ D+G +D + KP H +E+LAR+ A+ R + Sbjct: 63 LKEIRKKGNLIPVLLLTAKSEVDDKVEGLDAGANDYLAKPFHSKELLARIRAMTRVQTGQ 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + G + + + F L +E +++E +M+N G ++ + I+G + Sbjct: 123 TGSILKMGNVALNRAAFELSTSKGSFRLANKEFQMIELMMSNPGVLISAERFMEKIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D E NVV +IS LRKKL + R +GYS++ Sbjct: 182 DSEAEINVVWVYISYLRKKLAALQADIQIKVTRSVGYSLE 221 >gi|325263675|ref|ZP_08130409.1| phosphate regulon response regulator PhoB [Clostridium sp. D5] gi|324031384|gb|EGB92665.1| phosphate regulon response regulator PhoB [Clostridium sp. D5] Length = 226 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 10/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D +++ I G+ +GF E ++++ A + I ++ GE Sbjct: 1 MIYCVEDDDNIRELVIYTLETTGLKAQGFA--EGGSFMEALAFDTPELILLDIMLPGEDG 58 Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 L L +++ S+ +P+I ++ + + DSG DD V KP E+++RV A+ R Sbjct: 59 LSLLGKLKSSSKTKDIPVIMVTAKGAEYDKVVGLDSGADDYVTKPFGMMELVSRVKAVLR 118 Query: 118 RLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R ++++ + G + V + V G+ L +E +LE LM N+ + + Q+ Sbjct: 119 RTGRASDKDDMSVGGVCVNVKKHEVTVDGKTVTLTLKEFELLERLMRNQNIVLTRDQLLE 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D E V+ H+ LR+KL K + +++ R +GY I Sbjct: 179 DIWG-YDFDGETRTVDVHVRTLRQKLGVK--GEIIETVRGVGYRI 220 >gi|307730872|ref|YP_003908096.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307585407|gb|ADN58805.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 220 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 LDVLRALRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQ 119 Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S++ G + + ++G L RE +LE L+A G ++K+Q+ +Y Sbjct: 120 SGRSDSTIRHGNLTLDPASHQVTLEGAPVALSAREFALLEALLARPGAVLSKSQLEEKMY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + E + N VE +I LRK KLG D + + R LGY I Sbjct: 180 G-WGEEIGSNTVEVYIHALRK----KLGADLIRNVRGLGYMI 216 >gi|224541344|ref|ZP_03681883.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM 15897] gi|224525781|gb|EEF94886.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM 15897] Length = 223 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 6/198 (3%) Query: 28 GFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84 GF+++E EE L + + ++ G EL +R + + P+I ++ Sbjct: 26 GFDTIEAANAEEALDIVENQYIDLAVVDIMMPGMDGFELVEQMRQYREFPVIMLTAKSQS 85 Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQ 143 + L F G+DD V KP E++ARV I +R + S+N + G + D + Q Sbjct: 86 KDKLRGFSLGIDDYVTKPFDPDELMARVKTILKRYSINSSNVVKIGDVIFDGDKYEVRYQ 145 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 +V LP ++ + L N + + Q+ I+G+ D + V+ HI ++R+ L + Sbjct: 146 EQVIHLPLKQFELAFELAKNPNQIFTREQLIEKIWGM-DYDGFDRTVDVHIKRIRENLGH 204 Query: 204 KLGFDPVDSKRFLGYSID 221 GF V + R LGY I+ Sbjct: 205 LPGFKVV-TVRGLGYKIE 221 >gi|156740251|ref|YP_001430380.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156231579|gb|ABU56362.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 227 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 4/134 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFP- 148 FDSG DD + KP E+LARV A+ RR + ++R E + D R + P Sbjct: 91 FDSGADDYLVKPFAFEELLARVRALGRRFTLQPDDRDELRVGDLVLDLRHHTARRGARPL 150 Query: 149 -LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E +LEYLM N G+ +++ QI ++ ++ V+ +V+ +I+ LR+KL Sbjct: 151 DLTPTEWNLLEYLMRNAGQALSRQQILDYVWS-YEHDVQPQMVDVYIAYLRRKLNAPGER 209 Query: 208 DPVDSKRFLGYSID 221 DP+ + R +GY ++ Sbjct: 210 DPIVTVRGVGYRLE 223 >gi|15807237|ref|NP_295967.1| phosphate regulon transcriptional regulatory protein PhoB [Deinococcus radiodurans R1] gi|6460051|gb|AAF11793.1|AE002057_1 phosphate regulon transcriptional regulatory protein PhoB [Deinococcus radiodurans R1] Length = 238 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 12/159 (7%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGP 130 ++P++ ++ + ++ ++G DD + KP E++ARV A+ RR + GP Sbjct: 75 RLPVLMLTARAAEAERVEGLETGADDYLTKPFSAAELVARVRALLRRAQPETPQHLGNGP 134 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V + ++ G L RRE +L +L AN G+ ++T++ ++G D E V Sbjct: 135 LTVDLAAAEAQLAGRTLNLTRREFDLLAFLTANAGRVYSRTELLDRVWGA-DFLGGERTV 193 Query: 191 ESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI-DWN 223 + H+++LR LG DP +++ R GY + WN Sbjct: 194 DQHVTQLRA----HLGDDPGKPSFLETVRGKGYRMRAWN 228 >gi|257093436|ref|YP_003167077.1| DNA-binding response regulator CreB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045960|gb|ACV35148.1| two component transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 226 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 ++ R++R +S VP+I ++ + + G DD V KP RE+++RV AI RR + Sbjct: 61 DVCRLLRRNSDVPVIFLTARSDEVDRIVGLELGADDYVAKPFSPREVVSRVRAILRRSRP 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + N T R DG V G L R E +L L+A G+ +++ QI + Sbjct: 121 ELRNGAGATASARFTVDGEGLRVAYHGVWLNLTRYEYLLLTLLLARPGRILSRGQIMENV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + E++E V++H+ LR KLR + +P+ + R LGYSI Sbjct: 181 WQDSGESLERT-VDTHVKTLRGKLRAVRADEEPILTHRGLGYSI 223 >gi|256421617|ref|YP_003122270.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256036525|gb|ACU60069.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 227 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 4/169 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G ++L+ + + S V +I + SL + + G DD + KP H E+ AR+ A Sbjct: 57 GNGLELLQFMHLEKIDSCVLIISAKN--SLDDKISGLEGGADDYLTKPFHLPELHARLRA 114 Query: 115 IYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 I+RR K+ +N I + +D + V + +E +L Y + N+ + +++ I Sbjct: 115 IFRRKKLQGSNIVSFNEITLNTDTLEASVNEIRLDVTPKEFDLLLYFLVNKNRVLSRQSI 174 Query: 174 FSAIYGLF-DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++G + D + V H+ LRKK+ G D +++ LGY + Sbjct: 175 AAHLWGDYTDNLANFDFVYQHVKNLRKKIHAAEGADYINTVYGLGYKFN 223 >gi|33597417|ref|NP_885060.1| putative two-component response regulator [Bordetella parapertussis 12822] gi|33602158|ref|NP_889718.1| putative two-component response regulator [Bordetella bronchiseptica RB50] gi|33573844|emb|CAE38153.1| putative two-component response regulator [Bordetella parapertussis] gi|33576596|emb|CAE33674.1| putative two-component response regulator [Bordetella bronchiseptica RB50] Length = 223 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 13/169 (7%) Query: 57 GEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ L L R +R + P++ ++ L + D G DD + KP E+LAR+ A+ Sbjct: 58 GQSGLALLRALREGYDTTPVLLVTARDQLSDRIRGLDGGADDYIVKPFELDELLARLRAV 117 Query: 116 YRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR S+N+ G + V R G L + E R L LM RG+ V++ Sbjct: 118 LRR---SHNQVAPLMRHGELLVDPAARQVSRAGRPVALSQSEYRTLLALMQRRGRTVSRE 174 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Q+ +YG A+E N V ++ +LR+ KLG D +++ GY I Sbjct: 175 QLEHDVYG-ASVALESNTVAVYVHQLRR----KLGDDLIETVHGYGYRI 218 >gi|87122638|ref|ZP_01078515.1| Two comoponent transcriptional regulator, winged helix family protein [Marinomonas sp. MED121] gi|86162096|gb|EAQ63384.1| Two comoponent transcriptional regulator, winged helix family protein [Marinomonas sp. MED121] Length = 232 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 88/169 (52%), Gaps = 19/169 (11%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E ++IRA S+VP+I ++ + + G DD ++KP + RE+LAR+ AI RR Sbjct: 62 ETLKLIRAKSKVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRR--A 119 Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +N++ E +G + + R ++GE+ L E +LE +++ G+ + K ++ Sbjct: 120 ANDKEEDLATDLVSGNLLLQRKDRSVYLEGELIELTTSEYTLLECMLSLPGQVLTKQELS 179 Query: 175 SAIYG----LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 G ++D + ++ HIS LRKK+ + +P + + R +GY Sbjct: 180 EKALGRKLTMYDRS-----LDMHISNLRKKVGTLINGEPRIKTVRGVGY 223 >gi|219666589|ref|YP_002457024.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219536849|gb|ACL18588.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 246 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 12/162 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------L 119 IR SQVP++ IS + + G DD + KP + A++ AI RR + Sbjct: 90 IRKVSQVPIMFISSAGDNMNIVMAMNMGGDDFIAKPFDLNVLTAKIQAILRRTYHFAGQV 149 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K+ +R G + +D QG+ L + + RIL+ LM N+G+ V++ + ++ Sbjct: 150 KILEHR---GALLNTADA-SLTYQGQHIELTKNDYRILQALMENKGRVVSRDTLMQRLWE 205 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D V+EN + ++++LRKKL D + +K+ LGY I+ Sbjct: 206 T-DSFVDENTLTVNMTRLRKKLEAAGLKDFIITKKGLGYLIE 246 >gi|107025799|ref|YP_623310.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693018|ref|YP_838551.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170737720|ref|YP_001778980.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105895173|gb|ABF78337.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116651018|gb|ABK11658.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|169819908|gb|ACA94490.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 220 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 12/157 (7%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R +P I I+ + + DSG DD + KP E+LAR+ A+ RR RA+ Sbjct: 68 RRDENLPAIIITARDGVPDRIAGLDSGADDYLVKPFELDELLARIRAVNRR---HAGRAQ 124 Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 T GP+R+ + + PL +E +L LM G +++ Q +Y + E Sbjct: 125 TTLAIGPLRLDPVKHLVWLDDDEVPLSPKEFVLLHELMREPGAVISREQFEERLYS-WGE 183 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E N V+ HI LRK KLG D + + R +GY I Sbjct: 184 EIESNAVQVHIHNLRK----KLGHDMIRTVRGVGYRI 216 >gi|30264900|ref|NP_847277.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530386|ref|YP_021735.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49187716|ref|YP_030969.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49481771|ref|YP_038879.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65322198|ref|ZP_00395157.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165869737|ref|ZP_02214395.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634030|ref|ZP_02392353.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638007|ref|ZP_02396285.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685909|ref|ZP_02877132.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170705536|ref|ZP_02896000.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651274|ref|ZP_02934105.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|196033172|ref|ZP_03100585.1| DNA-binding response regulator [Bacillus cereus W] gi|196041444|ref|ZP_03108737.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196043886|ref|ZP_03111123.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206977011|ref|ZP_03237912.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962325|ref|YP_002340897.1| DNA-binding response regulator [Bacillus cereus AH187] gi|218906060|ref|YP_002453894.1| DNA-binding response regulator [Bacillus cereus AH820] gi|222098310|ref|YP_002532367.1| DNA-binding response regulator [Bacillus cereus Q1] gi|225866835|ref|YP_002752213.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227817627|ref|YP_002817636.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228917487|ref|ZP_04081036.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929881|ref|ZP_04092896.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936145|ref|ZP_04098948.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948581|ref|ZP_04110860.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228988098|ref|ZP_04148197.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229093945|ref|ZP_04225036.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|229124398|ref|ZP_04253586.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|229141576|ref|ZP_04270108.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|229158457|ref|ZP_04286518.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|229187098|ref|ZP_04314247.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|229199005|ref|ZP_04325691.1| DNA-binding response regulator [Bacillus cereus m1293] gi|229604112|ref|YP_002869105.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687640|ref|ZP_05151496.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725206|ref|ZP_05186989.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736944|ref|ZP_05194650.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741979|ref|ZP_05199666.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754423|ref|ZP_05206458.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254757256|ref|ZP_05209283.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259575|gb|AAP28763.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47505534|gb|AAT34210.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49181643|gb|AAT57019.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49333327|gb|AAT63973.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164714566|gb|EDR20085.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167513824|gb|EDR89192.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530831|gb|EDR93533.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170129661|gb|EDS98524.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670373|gb|EDT21113.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083100|gb|EDT68162.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|195994601|gb|EDX58556.1| DNA-binding response regulator [Bacillus cereus W] gi|196025222|gb|EDX63892.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196027692|gb|EDX66306.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|206744816|gb|EDZ56222.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217063173|gb|ACJ77423.1| DNA-binding response regulator [Bacillus cereus AH187] gi|218534774|gb|ACK87172.1| DNA-binding response regulator [Bacillus cereus AH820] gi|221242368|gb|ACM15078.1| DNA-binding response regulator [Bacillus cereus Q1] gi|225788218|gb|ACO28435.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227007195|gb|ACP16938.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228584471|gb|EEK42603.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228596407|gb|EEK54078.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228624976|gb|EEK81742.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228641856|gb|EEK98155.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|228659050|gb|EEL14702.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228689427|gb|EEL43241.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|228771596|gb|EEM20063.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228811080|gb|EEM57422.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823490|gb|EEM69319.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829797|gb|EEM75419.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842159|gb|EEM87258.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268520|gb|ACQ50157.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|324328738|gb|ADY23998.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 231 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 65 RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S E +++F + + E L ++E + E L++ + ++ + +A++ Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 DE+ VEEN + +I++LRKK N+LG + +++ R LGY Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223 >gi|330875500|gb|EGH09649.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 226 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 3/167 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +++ + +R+ S VP+I I+ L D G DD + KP RE++ARV AI Sbjct: 62 GRDGMDICKELRSFSAVPIIMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR ++ A G ++V + G V L E R+L + G+ ++ Q+ Sbjct: 122 RRTSATDPLAAKG-LQVDEEHYQASFNGVVLDLTPVELRLLATFARSPGRVFSRDQLLDR 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +Y V + V+SHI LR+KL G D + S +GY ++ Sbjct: 181 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDQIQSLYGVGYKLEL 226 >gi|315223364|ref|ZP_07865223.1| DNA-binding response regulator [Capnocytophaga ochracea F0287] gi|314946695|gb|EFS98684.1| DNA-binding response regulator [Capnocytophaga ochracea F0287] Length = 223 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G ++L+ R ++ + V +I D S++ + + G DD + KP H E+LARV + Sbjct: 57 GSGMQLLDELRAMKKNHSVLIISAKD--SVEDKVLGLEKGADDYLAKPFHLAELLARVKS 114 Query: 115 IYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 I RR N + E +++F + R +V L R+E +L Y + + V K Sbjct: 115 IIRR---KNQQGEEVITLKNVQLFPETRTVKVGNTTLTLNRKEYDLLYYFIIRPERLVEK 171 Query: 171 TQIFSAIYGLFDEAVEE-NVVESHISKLRKKLRN 203 T + A++G + + V+ + + S I LRKKL+ Sbjct: 172 TTLAEAVWGDYIDQVDSLDFIYSQIKNLRKKLKT 205 >gi|288818738|ref|YP_003433086.1| two-component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|288788138|dbj|BAI69885.1| two-component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|308752325|gb|ADO45808.1| two component transcriptional regulator, winged helix family [Hydrogenobacter thermophilus TK-6] Length = 224 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 29/208 (13%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--- 66 D Y+ +G++ EG++ + W+ R+ SA+ L G +L LP+ Sbjct: 9 DTYVGEMIKEGLTYEGYHVV----WV----RDGFSAMREALEGDYHLILLDIMLPKFDGM 60 Query: 67 -----IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 IR +P+I I+ ++ ++ +G DD + KP +E+LAR+ A+ RR K Sbjct: 61 KVLSRIREVKDIPVIMITAKSQVEDKVEGLSAGADDYITKPFSFKEVLARINAVLRRYK- 119 Query: 122 SNNRAETGPIRV---FSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E I+V + R EV +G L RE ++L+ L + G+ +++ ++F+ Sbjct: 120 ---KEEEDIIKVGDLLINPRSYEVYYRGRSIKLTSREFKLLKVLAEHAGEVLSRERLFAK 176 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204 ++G NVV+ +I LR KL ++ Sbjct: 177 VWG-SSYGENSNVVDVYIKNLRNKLEDR 203 >gi|227549745|ref|ZP_03979794.1| response regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227078180|gb|EEI16143.1| response regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 230 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 9/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118 IRA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 67 IRAVSAVPIIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGPEVVDEE 126 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ E G +++ V GE +P +E +LEYLM N G+ + + Q+ I+ Sbjct: 127 VEADERILEGGRVKMDVSRHTVFVDGEPVSMPLKEFDLLEYLMRNPGRVLTRGQLIERIW 186 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G D + ++ H+ +LR K+ Sbjct: 187 G-ADYVGDTKTLDVHVKRLRTKI 208 >gi|134095798|ref|YP_001100873.1| OmpR family response regulator [Herminiimonas arsenicoxydans] gi|133739701|emb|CAL62752.1| Transcriptional regulatory protein TctD [Herminiimonas arsenicoxydans] Length = 233 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 54/216 (25%), Positives = 103/216 (47%), Gaps = 16/216 (7%) Query: 8 RALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66 R+L + GY+ +GV + ++ +F+ + +S +E L R+ Sbjct: 18 RSLRQSGYVTDCVKNGVEADSALSTQDFDLLILDLGLPKMSGLEV-----------LQRL 66 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +S++P++ ++ S++ + D G DD + KP E+ ARV A+ RR Sbjct: 67 RARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGAGGGPTV 126 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + GP+ GR + ++ L RE +LE L+ G+ V+K Q+ + + E V Sbjct: 127 IKHGPLSYDQVGRIAYINDQMLELSARELGLLEVLLQRSGRLVSKEQLVDHLCE-WSEEV 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 N +E ++ +LRKK+ ++G + + R LGY ++ Sbjct: 186 SNNAIEVYVHRLRKKI--EIGGLRIATVRGLGYCLE 219 >gi|71734320|ref|YP_276098.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. phaseolicola 1448A] gi|257486549|ref|ZP_05640590.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628131|ref|ZP_06461085.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649903|ref|ZP_06481246.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. aesculi str. 2250] gi|298488665|ref|ZP_07006694.1| DNA-binding response regulator TctD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554873|gb|AAZ34084.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. phaseolicola 1448A] gi|298156738|gb|EFH97829.1| DNA-binding response regulator TctD [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330871254|gb|EGH05963.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330889487|gb|EGH22148.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. mori str. 301020] gi|330989046|gb|EGH87149.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010032|gb|EGH90088.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 223 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 79/149 (53%), Gaps = 11/149 (7%) Query: 63 LPRI--------IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 LPR+ +RA S+ +P++ ++ ++ + + G DD + KP E+ ARV Sbjct: 54 LPRMDGFEVLARLRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVK 113 Query: 114 AIYRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ RR + R + + + D R + E+ L RE+ +LE L+A G+ ++K Q Sbjct: 114 ALLRRSVLGGERQQRCGVLAYDLDTRRFTLGEELLALTSREQAVLEALIARPGRVMSKEQ 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + + ++GL DE + +E ++ +LRKKL Sbjct: 174 LAAQVFGL-DEEASPDAIEIYVHRLRKKL 201 >gi|46199662|ref|YP_005329.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55981691|ref|YP_144988.1| putative response regulator [Thermus thermophilus HB8] gi|46197288|gb|AAS81702.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55773104|dbj|BAD71545.1| putative response regulator [Thermus thermophilus HB8] Length = 225 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 17/200 (8%) Query: 28 GFNSLEFEEW---LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDYPS 83 GF LE E+ L+ + D+ ++ L G LE+ R+IR ++PL+ ++ Sbjct: 24 GFEVLEAEDGEKALELFPQADLVILDLMLPKVGG--LEVARLIRQERPELPLLILTAKGE 81 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ 143 + + + G DD V KP RE++ARV A+ RR + GP+R+ R+ + Sbjct: 82 EEDRVLGLELGADDYVVKPFSPREVVARVKALLRRAGLREELV-YGPLRLLPTRREAYLA 140 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 G+ PL R E +L L + G ++ ++ ++G V + VV+ HI+ LRK Sbjct: 141 GKPLPLSRLEFDLLLTLAQHPGVVFSRERLLERVWGPGFPGV-DRVVDVHIAALRK---- 195 Query: 204 KLGFDP-----VDSKRFLGY 218 KLG DP +++ R +GY Sbjct: 196 KLGDDPENPRFIETVRGVGY 215 >gi|331658014|ref|ZP_08358976.1| transcriptional activator protein CopR [Escherichia coli TA206] gi|331056262|gb|EGI28271.1| transcriptional activator protein CopR [Escherichia coli TA206] Length = 260 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRNNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254 >gi|320658631|gb|EFX26325.1| transcriptional regulatory protein YedW [Escherichia coli O55:H7 str. USDA 5905] Length = 260 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254 >gi|298247083|ref|ZP_06970888.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297549742|gb|EFH83608.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 227 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 97/215 (45%), Gaps = 18/215 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEK 59 +++DD D IA D + EGF + + E+ L + R V + ++ G Sbjct: 6 LIVDD-----DAAIAHLLRDFLKAEGFQVMVATDAEKALDTVQRTSVDCLVLDVMMPGRS 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L R IR S +P++ +S Y S + L F G DD + K E++ARV A+ RR Sbjct: 61 GFDLCRHIRETSNLPILFLSAYDSDKEKLRGFGLGGDDYIAKSASPSEVVARVKAVLRRC 120 Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K S++ G + + + ++G+ P RE +L + + + + Q+F Sbjct: 121 QKEKPSSSMFNFGRLVIDPVAHEVLIEGQPLPFTTREFALLCFFAEHPRQVFTREQLFER 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 +G E + V HI ++R+K+ DP D Sbjct: 181 FWG---EIGDRQTVTVHIRRIREKIER----DPAD 208 >gi|257790500|ref|YP_003181106.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|325829924|ref|ZP_08163382.1| response regulator receiver domain protein [Eggerthella sp. HGA1] gi|257474397|gb|ACV54717.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|325488091|gb|EGC90528.1| response regulator receiver domain protein [Eggerthella sp. HGA1] Length = 226 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 9/134 (6%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--- 129 P++ ++ + L SG DD + KP E+LAR+ AI RR + R + G Sbjct: 72 TPVLMLTARSATADKLRGLRSGADDYLAKPFDRDELLARIEAILRR---TTGRRDVGIVA 128 Query: 130 --PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 + + + R + E L ++ ILEYL++++G ++K ++F I+G + Sbjct: 129 FKELALHTRTRQAFIADEPLALKGKQYDILEYLVSHQGSLISKERLFDKIWGFMSD-TSS 187 Query: 188 NVVESHISKLRKKL 201 NVVE ++S LRK L Sbjct: 188 NVVEVYVSALRKAL 201 >gi|167629726|ref|YP_001680225.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] gi|167592466|gb|ABZ84214.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] Length = 234 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 31/227 (13%) Query: 16 IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------KGEKVLELPRIIRA 69 +A D + EGF L + + DV F++ G +VL+ IR Sbjct: 13 VAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDGSEVLQY---IRR 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-- 127 + P+I ++ + + F G DD + KP E+ ARV A+ RR + +++ E Sbjct: 70 KTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTEGTHHITENQ 129 Query: 128 --------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 G + + D + +V+G V L +E +L+YL + V QI+ +++G Sbjct: 130 VGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTIAQIYESVWG 189 Query: 180 LFDEAV-EENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSI 220 E + ++N V HIS +LRNK+ DP + +R LGY + Sbjct: 190 --KEFIHDDNTVMVHIS----RLRNKIEEDPANPQRLQTVRGLGYRL 230 >gi|153002710|ref|YP_001368391.1| two component transcriptional regulator [Shewanella baltica OS185] gi|151367328|gb|ABS10328.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] Length = 231 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 79/151 (52%), Gaps = 8/151 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TG 129 P++ ++ S Q ++ D+G DD + KP H +E++AR+ A+ RR S +A G Sbjct: 74 PILILTARDSWQDKVEGLDAGADDYLTKPFHPQELVARLKALIRR---SAGKASPLIYNG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P + + + E+ L E ++ E+ M ++G+ +KT + IY D ++ NV Sbjct: 131 PFSLNTSSLEVRKGEELVNLSGSEYKLFEFFMLHQGEVKSKTVLTEHIYDQ-DFDLDSNV 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E I +LRKKL ++ +++ R GY + Sbjct: 190 IEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220 >gi|126663766|ref|ZP_01734762.1| two component transcriptional regulator, winged helix family protein [Flavobacteria bacterium BAL38] gi|126624349|gb|EAZ95041.1| two component transcriptional regulator, winged helix family protein [Flavobacteria bacterium BAL38] Length = 221 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 14/162 (8%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 RI + + +P+I ++ ++Q T++ +G +D + KP E+L R +R Sbjct: 63 CKRIRKEKTNLPIIFLTAKDTVQETIEGLKAGANDYIKKPFSFDELLERTKIHFRTKDEV 122 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 L + N + +VF D ++ L +RE +LEYL+ N+GK +T I Sbjct: 123 KVLTLGNITIDKSKFQVFVDNKE-------VSLTQREFELLEYLIKNKGKVCTRTNIIED 175 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ + E + V++ ++ +RKKL D + + R +GY Sbjct: 176 VWDIHFE-YDTGVIDVFMNAIRKKLNLTKDQDLIKTIRGIGY 216 >gi|114778428|ref|ZP_01453273.1| response regulator receiver domain protein (CheY-like) [Mariprofundus ferrooxydans PV-1] gi|114551272|gb|EAU53830.1| response regulator receiver domain protein (CheY-like) [Mariprofundus ferrooxydans PV-1] Length = 227 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 21/158 (13%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L + R +RA P++ ++ S++ + D+G DD + KP E+LARV A+ RR Sbjct: 60 LVVCRELRASGVSTPVLMLTARDSVEDKVRGLDAGADDYLAKPFAFEELLARVRALLRRK 119 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 LKV++ E PI R QG L +E +LEYLM N GK +++T Sbjct: 120 SESKSPVLKVAD--LELDPI-----SRRVSRQGSSIRLTTKEYALLEYLMRNPGKVLSRT 172 Query: 172 QIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 I ++ + FD E NV++ +IS LR K+ GFD Sbjct: 173 LIGEHVWDMNFDP--ESNVIDVYISHLRSKIDK--GFD 206 >gi|163942574|ref|YP_001647458.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229135685|ref|ZP_04264462.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|163864771|gb|ABY45830.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228647783|gb|EEL03841.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] Length = 231 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 65 RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S E +++F + + E L ++E + E L++ + ++ + +A++ Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 DE+ VEEN + +I++LRKK N+LG + +++ R LGY Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENSIETVRGLGY 223 >gi|328544519|ref|YP_004304628.1| Response regulators consisting of a chemotaxis protein CheY domain and a winged-helix DNA-binding domain [polymorphum gilvum SL003B-26A1] gi|326414261|gb|ADZ71324.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Polymorphum gilvum SL003B-26A1] Length = 227 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 14/171 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G V+E R +A P++ +S + + +G DD + KP E+LAR+ A+ Sbjct: 59 GLSVIEALR--KAGDHTPVLILSALGQVDDRVTGLRAGGDDYLPKPFAFTELLARIEALG 116 Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR K S ET + +D G+ PL RE R+LEYLM + G+ V + Sbjct: 117 RRPKASG---ETETVYRVADLELDRLTHRCSRAGKDIPLQPREFRLLEYLMQHAGQVVTR 173 Query: 171 TQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 T + ++ FD + NV++ HIS+LR K+ + + R GYSI Sbjct: 174 TMLLENVWEYHFDP--QTNVIDVHISRLRAKIDKDFDRPLLHTIRGAGYSI 222 >gi|326789158|ref|YP_004306979.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326539922|gb|ADZ81781.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 237 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 7/165 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR S +P+I ++ + + D G D + KP E+LAR+ ++ +LK Sbjct: 70 MEVLRRIRQVSSLPVIMLTAKDDVMDKVMGLDLGAQDYITKPFAIEELLARIRVLF-KLK 128 Query: 121 VSNNRAETGPIRVFSDGRDP---EVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFS 175 + A ++ DP EV P L ++E +L++LM N+ + + QI Sbjct: 129 ATTPTATPEVLKCGQLTLDPERYEVSYNNIPLALTKKEFELLQFLMLNKNLLITREQILE 188 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D + NVV+ +I LR K+ + + + R +GY I Sbjct: 189 KVWG-YDYLGDTNVVDVYIRYLRNKIDQRFEDKLIYTVRGMGYQI 232 >gi|226356996|ref|YP_002786736.1| response regulator CheY [Deinococcus deserti VCD115] gi|226318986|gb|ACO46982.1| putative response regulator, CheY [Deinococcus deserti VCD115] Length = 229 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 9/157 (5%) Query: 57 GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 GE L R +RA ++ +P++ ++ + ++ +SG DD + KP E++ARV Sbjct: 55 GESGLGFLRRLRADAELRRMPVLMLTARAAEAERVEGLESGADDYLTKPFSAAELVARVR 114 Query: 114 AIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ RR + + T GP+ V + + V G+ L RRE +L +L N G+ ++T+ Sbjct: 115 ALLRRSQPDSPPTLTNGPLIVDVNAAEARVSGKRLNLTRREFDLLAFLTQNTGRVYSRTE 174 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 + ++G D E V+ H+++LR LG DP Sbjct: 175 LLDRVWG-ADFLGGERTVDQHVTQLRA----HLGDDP 206 >gi|192361100|ref|YP_001980663.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107] gi|190687265|gb|ACE84943.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107] Length = 221 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 57 GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G L++ R RA P++ ++ +D +G DD + KP H E+ R+ A+ Sbjct: 56 GTSGLDVLRHWRAQGLHTPVLILTARDKWSERIDGLKAGADDYLTKPFHPEELQLRIQAL 115 Query: 116 YRRLKVSNNRAE-TGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR N+ + V + R + +GE L E +L YLM + + ++K+Q+ Sbjct: 116 LRRAHGFANQPQLQAAGLVLDEARQMAQYRGETVTLTAAEFSLLRYLMLHPERILSKSQL 175 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +Y + + NV+E HI+ LR+ KLG D ++++R GY + Sbjct: 176 YDHLYN-GEAERDSNVIEVHINHLRR----KLGKDIIETRRGQGYRL 217 >gi|168184808|ref|ZP_02619472.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237793637|ref|YP_002861189.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672118|gb|EDT84079.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229261261|gb|ACQ52294.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 230 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 9/164 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S++P+I IS S + ++G DD + KP + I+A++ + RR Sbjct: 66 RRIRQKSKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYA 125 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 KV E ++ + + + E + E + ++E +LEYLM K V + + I+ Sbjct: 126 PKVDEKIVELQGLKFYKERSEIEFRDERVIITKKEGILLEYLMKKYPKVVNRDFLLEKIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 E VEEN + ++S++RK+L +KLG D +++ R +GY ++ Sbjct: 186 DDI-EFVEENTLNVNVSRIRKRL-HKLGIEDGIETVRGVGYRLN 227 >gi|300822262|ref|ZP_07102403.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7] gi|300525145|gb|EFK46214.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7] gi|323936954|gb|EGB33235.1| heavy metal response regulator [Escherichia coli E1520] Length = 260 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254 >gi|299537379|ref|ZP_07050677.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298727171|gb|EFI67748.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 227 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 6/181 (3%) Query: 26 LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85 +E F + E RE++ + ++ E + + IRA S VP+I ++ + + Sbjct: 26 IETFTAASGTEAYDVIVRENIDLVLLDVMMPHEDGFVVCQSIRAMSNVPIIFLTARDANE 85 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-----GPIRVFSDGRDP 140 + G DD + KP H E++AR+ A+ RR + + G I++ R Sbjct: 86 DKVKGLTLGGDDYIVKPFTHDELVARIYAVLRRSGANITELQQKYVIFGSIKIDEIARKV 145 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 V G+ PL +E +L M N G ++ Q+ I+ + D V++HI LR K Sbjct: 146 SVDGKSIPLTLKEFELLHLFMKNPGNAYSREQLLERIWDI-DYVGGTRTVDTHIKTLRIK 204 Query: 201 L 201 L Sbjct: 205 L 205 >gi|161986515|ref|YP_310926.2| transcriptional regulatory protein YedW [Shigella sonnei Ss046] gi|323168911|gb|EFZ54591.1| transcriptional activator protein irlR [Shigella sonnei 53G] Length = 223 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 3/159 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 121 LNSTLEISGLRMDSVSQSVSRNNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 FD + N V+ I +LR K+ + + + R +GYS Sbjct: 181 FDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 >gi|66769829|ref|YP_244591.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|188993044|ref|YP_001905054.1| two-component system response regulator [Xanthomonas campestris pv. campestris str. B100] gi|66575161|gb|AAY50571.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734804|emb|CAP53014.1| two-component system response regulator [Xanthomonas campestris pv. campestris] Length = 271 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 19/172 (11%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I ++ + D+G +D V KP +E++AR+ A+ R+ Sbjct: 104 EVLREIRQWSSVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQAGA 163 Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N E+ VF DG R+ + GE PL R+E +L L + G+ V + Q+ Sbjct: 164 GNTVEES----VFDDGRLHIHLGLREVTLDGEAVPLSRKEYALLALLFKHAGRVVTQPQL 219 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG------FDPVDSKRFLGYS 219 ++G E + + + + KLR+KL + +P RF+G + Sbjct: 220 LREVWGPTHEE-DTHYLRILVGKLRQKLHDDAAAPHYIVTEPGVGLRFIGVT 270 >gi|310641768|ref|YP_003946526.1| alkaline phosphatase synthesis transcriptional regulatory proteinphop [Paenibacillus polymyxa SC2] gi|309246718|gb|ADO56285.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Paenibacillus polymyxa SC2] Length = 224 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 49/202 (24%), Positives = 96/202 (47%), Gaps = 5/202 (2%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISD 80 + LEG +E + L + D + ++ ++ G EL R +R + +PL+ ++ Sbjct: 21 LRLEGLEVVEAVDGLDAMRLFDETKVDLLVLDIMMPGMDGWELCRKLREQTDLPLLMLTA 80 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRD 139 + F G DD + KP ++ARV A+ +R ++ +++ T G + + SD + Sbjct: 81 KGETSQIVKGFALGTDDYLVKPFDPMVLVARVKALLKRYRIMASKSVTIGDLVLRSDTFE 140 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 + + LPR+E +L L + GK + + I+G +D +E V+ HI +LR+ Sbjct: 141 CQAGEQGITLPRKEFELLFKLASYPGKTFTRDHLIEQIWG-YDYEGDERTVDVHIKRLRE 199 Query: 200 KLRNKLGFDPVDSKRFLGYSID 221 + + + R LGY ++ Sbjct: 200 RFPEATQSFAIRTIRGLGYRLE 221 >gi|168752198|ref|ZP_02777220.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4113] gi|168757600|ref|ZP_02782607.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4401] gi|195940656|ref|ZP_03086038.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7 str. EC4024] gi|261227539|ref|ZP_05941820.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7 str. FRIK2000] gi|261254637|ref|ZP_05947170.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7 str. FRIK966] gi|291283144|ref|YP_003499962.1| Heavy metal response regulator [Escherichia coli O55:H7 str. CB9615] gi|188013893|gb|EDU52015.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4113] gi|189355396|gb|EDU73815.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4401] gi|290763017|gb|ADD56978.1| Heavy metal response regulator [Escherichia coli O55:H7 str. CB9615] gi|320191940|gb|EFW66587.1| Putative two-component system response regulator YedW [Escherichia coli O157:H7 str. EC1212] gi|320641815|gb|EFX11203.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7 str. G5101] gi|320668529|gb|EFX35356.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7 str. LSU-61] gi|326344882|gb|EGD68629.1| Putative two-component system response regulator YedW [Escherichia coli O157:H7 str. 1125] Length = 260 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254 >gi|168362851|ref|ZP_02696025.1| regulatory protein VanR [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|171903029|gb|EDT49318.1| regulatory protein VanR [Ureaplasma urealyticum serovar 13 str. ATCC 33698] Length = 219 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 5/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125 IR+ P+I ++ +D SG DD + KP E+LARV A RR + ++ Sbjct: 66 IRSKVDCPIIFLTAKTMESDIVDGLLSGGDDYITKPFGVGELLARVEAHLRREQREKHSS 125 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 G IR V E L + E +I E L +G+ +K QI+ I+G FD Sbjct: 126 LNLGNIRFDLSSNQVFVNEEEVHLTKSEYQISELLAKRKGQVFSKEQIYEMIFG-FDGIG 184 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + + + H+ +R K + K+G +P+ + +GY WN Sbjct: 185 DSSAISEHVKNIRAKFQ-KIGENPIATVWGIGYK--WN 219 >gi|71279007|ref|YP_269498.1| response regulator [Colwellia psychrerythraea 34H] gi|71144747|gb|AAZ25220.1| response regulator [Colwellia psychrerythraea 34H] Length = 243 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 91/185 (49%), Gaps = 28/185 (15%) Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L L I + +P+I ++ S+ + + D G DD + KP +E+LAR+ I RRL Sbjct: 60 LLVLKEIRAKKNDLPVIILTARDSIDSKVKGLDYGADDYLAKPFDMQELLARLRVIERRL 119 Query: 120 KVSNNRA--------ETGPIRVF-------SDGRDPEVQGEV--------FPLPRRERRI 156 +++ +T +V+ ++ ++ E +GE+ ++E + Sbjct: 120 GTASSSMITIDRVSLDTKSHKVYLLQCNQVNNEQNHEQEGEINAQNGASEVHFSKKEFMV 179 Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 L+ LM N G+ ++ QI S +Y + E V N VE HI KLRK L NK + + R + Sbjct: 180 LKALMENAGRIQSREQIESKLYQ-WGEEVLSNAVEVHIHKLRKNLPNKF----IQNVRGV 234 Query: 217 GYSID 221 GY I+ Sbjct: 235 GYIIN 239 >gi|52140668|ref|YP_086162.1| DNA-binding response regulator [Bacillus cereus E33L] gi|51974137|gb|AAU15687.1| DNA-binding response regulator [Bacillus cereus E33L] Length = 231 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 65 RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S E +++F + + E L ++E + E L++ + ++ + +A++ Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 DE+ VEEN + +I++LRKK N+LG + +++ R LGY Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223 >gi|42784035|ref|NP_981282.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42739965|gb|AAS43890.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 231 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 65 RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S E +++F + + E L ++E + E L++ + ++ + +A++ Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 DE+ VEEN + +I++LRKK N+LG + +++ R LGY Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223 >gi|323968255|gb|EGB63663.1| heavy metal response regulator [Escherichia coli M863] gi|323977850|gb|EGB72936.1| heavy metal response regulator [Escherichia coli TW10509] Length = 260 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254 >gi|300772484|ref|ZP_07082354.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300760787|gb|EFK57613.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 232 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 13/199 (6%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 +L++ G L + V+L G LE + S D+ ++ L G L + R IR Sbjct: 14 SLIRRGLSELNFNISVALNGLTGLE----MAVSGNYDLIILDVML--PGMDGLRVCRNIR 67 Query: 69 AHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS----- 122 + VP++ +S + +D F S DD + KP + E+ ARV+ R++ + Sbjct: 68 QQKKNVPILILSALDQPEDIVDGFKSDADDYLTKPFNMEELKARVSRFSRKIGQTSRVEE 127 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 NN E + + + + Q L E R+LE+LM N+ + V++ I +++G+ D Sbjct: 128 NNNLEFADLILDYSSKIAKRQDVDIALTATEFRLLEFLMKNQKRVVSRIDILESVWGM-D 186 Query: 183 EAVEENVVESHISKLRKKL 201 + NVV+ +I+ LR K+ Sbjct: 187 FNLSTNVVDVYINYLRNKI 205 >gi|224475794|ref|YP_002633400.1| putative response regulator protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222420401|emb|CAL27215.1| putative response regulator protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 226 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 8/155 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121 R IR S VP++ +S + + + G DD + KP + ++A++ A+YRR+ + Sbjct: 64 RQIRHESNVPILFLSARDNPMDQVMSMELGADDFIQKPFYTNVLIAKLKAVYRRVYQFNL 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R T G I+V E + EV L + E ILE L+ +R + V++ +I +A++ Sbjct: 124 EEKRTMTWGNIQVDLAKGVLEREEEVIYLSKTEMMILEILLKHRNEIVSRDEIITALWD- 182 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKR 214 DEA + +N + +I++LRKKL + G D R Sbjct: 183 -DEAFISDNTLTVNINRLRKKLAD-FGLDTAIETR 215 >gi|194440153|ref|ZP_03072201.1| heavy metal response regulator [Escherichia coli 101-1] gi|256022375|ref|ZP_05436240.1| transcriptional regulatory protein YedW [Escherichia sp. 4_1_40B] gi|293415278|ref|ZP_06657921.1| two-component system [Escherichia coli B185] gi|194420916|gb|EDX36955.1| heavy metal response regulator [Escherichia coli 101-1] gi|291432926|gb|EFF05905.1| two-component system [Escherichia coli B185] gi|324018823|gb|EGB88042.1| transcriptional activator protein Irlr [Escherichia coli MS 117-3] Length = 260 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254 >gi|187935627|ref|YP_001885324.1| DNA-binding response regulator [Clostridium botulinum B str. Eklund 17B] gi|187723780|gb|ACD25001.1| DNA-binding response regulator [Clostridium botulinum B str. Eklund 17B] Length = 222 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 3/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124 IR +S +P+I ++ S + G DD + KP + ++AR+ A+ RR +SN+ Sbjct: 67 IRKYSNIPIIFVTSRDSNMDEIMSMTVGGDDFITKPYDSQILIARITAVLRRSYNNLSND 126 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E + + + Q + L + E +IL L+ N+G V + + + ++ D Sbjct: 127 ILEYKGVSLNLGKGNVTYQNKTIDLTKNEFKILNNLLQNKGSIVTRDDLMNYLWN-DDVF 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + +I++LRKKL D ++++R LGY I Sbjct: 186 LDDNTLTVNINRLRKKLEEINIHDFIETRRGLGYII 221 >gi|170680782|ref|YP_001743277.1| transcriptional regulatory protein YedW [Escherichia coli SMS-3-5] gi|194433665|ref|ZP_03065941.1| heavy metal response regulator [Shigella dysenteriae 1012] gi|293405449|ref|ZP_06649441.1| two-component system response regulator YedW [Escherichia coli FVEC1412] gi|301018162|ref|ZP_07182681.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1] gi|331673476|ref|ZP_08374244.1| transcriptional activator protein CopR [Escherichia coli TA280] gi|332278865|ref|ZP_08391278.1| transcriptional regulatory protein YedW [Shigella sp. D9] gi|170518500|gb|ACB16678.1| heavy metal response regulator [Escherichia coli SMS-3-5] gi|194418094|gb|EDX34187.1| heavy metal response regulator [Shigella dysenteriae 1012] gi|291427657|gb|EFF00684.1| two-component system response regulator YedW [Escherichia coli FVEC1412] gi|300399854|gb|EFJ83392.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1] gi|320180635|gb|EFW55563.1| Putative two-component system response regulator YedW [Shigella boydii ATCC 9905] gi|324119015|gb|EGC12904.1| heavy metal response regulator [Escherichia coli E1167] gi|331069674|gb|EGI41061.1| transcriptional activator protein CopR [Escherichia coli TA280] gi|332101217|gb|EGJ04563.1| transcriptional regulatory protein YedW [Shigella sp. D9] Length = 260 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254 >gi|153955619|ref|YP_001396384.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146348477|gb|EDK35013.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] Length = 228 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + R + P+I ++ + + DSG DD + KP E+LAR+ A+ RR Sbjct: 63 LKELRRNGIETPVILLTAKGETEDKVRGLDSGADDYLAKPFEAEELLARLRALGRR---K 119 Query: 123 NNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G ++ DP + + F L +E ++LE L+ +G ++K I + Sbjct: 120 SELVNEGILKYGDMKLDPLNLRLSCRKQEFKLTLKECQLLELLIKGKGIIISKNVIVEKL 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G ++ VE N VE ++S LRKKLRN + + R GY I Sbjct: 180 WG-YETDVEYNNVEVYVSFLRKKLRNIKSNVFIQTVRGAGYVI 221 >gi|310641974|ref|YP_003946732.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309246924|gb|ADO56491.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 230 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 9/144 (6%) Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--- 122 +IR H+ VP+I IS ++ + G DD + KP +E+ AR+ A++RR+K++ Sbjct: 66 LIRKHTDVPIIVISTENNISERIRTLTLGADDYICKPFSMQELKARIEALFRRIKITRLQ 125 Query: 123 --NNRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N E P I + R V G++ + E +++ +NRG ++ + A+ Sbjct: 126 GRNTSPEAEPENGISLDLARRMVIVNGQMVEMTYSEFELMKLFYSNRGIVFSRYALIQAL 185 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 G D + E V+ HI+ LR+K+ Sbjct: 186 RGT-DSFINERAVDVHINHLRRKI 208 >gi|300923861|ref|ZP_07139879.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1] gi|300419894|gb|EFK03205.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1] Length = 260 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254 >gi|238761757|ref|ZP_04622731.1| Transcriptional regulatory protein basR/pmrA [Yersinia kristensenii ATCC 33638] gi|238699871|gb|EEP92614.1| Transcriptional regulatory protein basR/pmrA [Yersinia kristensenii ATCC 33638] Length = 219 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 80/155 (51%), Gaps = 6/155 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 R H +P++ ++ +L+ +D D+G DD + KP E+LARV A+ RR + S+N Sbjct: 68 REHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQGQSDNLV 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + + + + +QG+ + +E IL L+ G+ V + + +Y D+ + Sbjct: 128 QQDDLSLNLSTQQVCLQGQPLEVTPKEFAILSRLIMRAGQTVNRELLQQDLYTWNDD-LG 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 N +E HI LR+ KLG D + + R +GY ++ Sbjct: 187 SNTLEVHIHNLRR----KLGKDRIRTVRGIGYRLE 217 >gi|228999620|ref|ZP_04159197.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] gi|229007167|ref|ZP_04164786.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228754082|gb|EEM03508.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228760146|gb|EEM09115.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] Length = 231 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 11/162 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 65 RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S E +++F + + E L ++E + E L++ + + + +A++ Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKHPRTANREDLLAALW 184 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 DE+ VEEN + +I++LRKK N+LG + +++ R LGY Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223 >gi|229072342|ref|ZP_04205546.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228710767|gb|EEL62738.1| DNA-binding response regulator [Bacillus cereus F65185] Length = 231 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 65 RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S E +++F + + E L ++E + E L++ + ++ + +A++ Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 DE+ VEEN + +I++LRKK N+LG + +++ R LGY Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENSIETVRGLGY 223 >gi|257790923|ref|YP_003181529.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|257474820|gb|ACV55140.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] Length = 220 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 3/163 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G EL R IR P++ ++ S + G DD + KP E+ ARVAA Sbjct: 56 GTDGFELCRAIRGSVDAPIVFLTARSSEDDAVYGLGLGADDYLRKPFGAAELRARVAAHL 115 Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + A + G +R+ R+ V PL + E + E+L + G+ ++ QI Sbjct: 116 RRERRERKHALSFGALRLDLASREAYVGEATVPLTKTEFDVCEFLARHPGQAFSRDQIVE 175 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + G +D + + H++ R KL+ G +P+D+ +GY Sbjct: 176 NVLG-WDAESAASTISVHVANARAKLKAA-GAEPIDTVWGVGY 216 >gi|53804200|ref|YP_114203.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath] gi|53757961|gb|AAU92252.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath] Length = 224 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 108/222 (48%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D + DG +DG L + + + + D+ ++ L G++V Sbjct: 3 ILLVEDDETLADGLSRSLAEDGFDLTVAATGTYADSALRTQDYDLVILDLGLPDIDGKEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R+ + S VP++ ++ L + + G DD + KP RE+ ARV A+ RR Sbjct: 63 LRQLRVRK--SPVPVLILTARDGLDDRIGGLELGADDYMTKPFELRELEARVRALIRRSH 120 Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + R V GE LP RE +LE L+ G+ V+K +I + Sbjct: 121 GGFGHDIVCGPLVLNTFDRQVHVNGEPMLLPSREYGVLEALLLQAGRVVSKDRIALRLAS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + +N +E ++ +LR++L + LG + + R LGY ++ Sbjct: 181 GGDE-LADNAIEVYVHRLRRRL-DDLGI-RIRTVRGLGYLLE 219 >gi|47568009|ref|ZP_00238715.1| DNA-binding response regulator [Bacillus cereus G9241] gi|229099317|ref|ZP_04230248.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|229105475|ref|ZP_04236117.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|229118328|ref|ZP_04247684.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|301056347|ref|YP_003794558.1| DNA-binding response regulator [Bacillus anthracis CI] gi|47555312|gb|EAL13657.1| DNA-binding response regulator [Bacillus cereus G9241] gi|228665158|gb|EEL20644.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228677942|gb|EEL32177.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228684135|gb|EEL38082.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|300378516|gb|ADK07420.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 231 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 65 RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S E +++F + + E L ++E + E L++ + ++ + +A++ Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 DE+ VEEN + +I++LRKK N+LG + +++ R LGY Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223 >gi|309795924|ref|ZP_07690337.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7] gi|308120374|gb|EFO57636.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7] gi|320198658|gb|EFW73258.1| Putative two-component system response regulator YedW [Escherichia coli EC4100B] Length = 260 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254 >gi|291543615|emb|CBL16724.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. 18P13] Length = 232 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 93/199 (46%), Gaps = 21/199 (10%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRII 67 L K+GY + DG ++ FN+L + D+ ++ L G G +V R I Sbjct: 23 LEKEGYSVILSHDGEEAVVKFNAL----------KPDIVLLDVMLPGLDGWQVC---REI 69 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R S +P++ I+ + + G DD + KP +E++AR+ A+ RR S E Sbjct: 70 RKKSNIPILMITAKSDTFDKVLGLELGADDYIVKPFDSKEVIARIKAVVRRTGQSPAEME 129 Query: 128 TGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +R V + +V G+V P +E +L YL +N + + Q+ ++G F+ Sbjct: 130 VREVRYDKLSVNMTRYELKVDGKVVDAPPKELELLFYLASNPNRVYTRDQLLDEVWG-FE 188 Query: 183 EAVEENVVESHISKLRKKL 201 + ++ HI +LR+KL Sbjct: 189 YYGDSRTIDVHIKRLREKL 207 >gi|226227419|ref|YP_002761525.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226090610|dbj|BAH39055.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 222 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 87/167 (52%), Gaps = 5/167 (2%) Query: 57 GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G L++ R +R+ + P++ ++ ++ ++ +G DD V KP E+LAR A+ Sbjct: 56 GRNGLDVLRTLRSSGFERPVLVLTAQDAVDAKVETLRAGADDYVTKPFAFEELLARAEAL 115 Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + +++ + G + + R+ GE+ L +E +LEYLM + G+ +++T I Sbjct: 116 LRRPRALASPQLRVGDLELDQGTREVLRAGELIELTPKEFAVLEYLMRHAGRVMSRTLIT 175 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G FD N+V+ I+ LRKK+ + + + R +GY I Sbjct: 176 EYAWGYHFDPGT--NIVDVVINHLRKKIDARFDKKLITTVRGVGYMI 220 >gi|218695574|ref|YP_002403241.1| transcriptional regulatory protein YedW [Escherichia coli 55989] gi|218352306|emb|CAU98068.1| DNA-binding response regulator in two-component system with YedV [Escherichia coli 55989] gi|315617851|gb|EFU98449.1| transcriptional activator protein irlR [Escherichia coli 3431] Length = 223 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 42 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 101 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 102 FSFSELLARVRAQLRQHHTLNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 161 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 162 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 >gi|189466516|ref|ZP_03015301.1| hypothetical protein BACINT_02891 [Bacteroides intestinalis DSM 17393] gi|189434780|gb|EDV03765.1| hypothetical protein BACINT_02891 [Bacteroides intestinalis DSM 17393] Length = 229 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 12/153 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G K+ L + + +QVP+I I+ + T+ F+ G DD ++KP RE++ARV A+ Sbjct: 61 GFKMASLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVL 120 Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 RR E P ++ + + GE PL ++E IL L+ ++G+ + Sbjct: 121 RR--TQQGEQERAPEQISYKTLVIDIVKKKVSIDGEEAPLTKKEFEILLLLLQSKGRVFS 178 Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201 + I + I+ DE V + ++ +I++LRKK+ Sbjct: 179 REDILARIWS--DEVYVLDRTIDVNITRLRKKI 209 >gi|146341626|ref|YP_001206674.1| putative two-component response regulator (QseB/CopT-like) [Bradyrhizobium sp. ORS278] gi|146194432|emb|CAL78457.1| putative two-component response regulator (QseB/CopT-like) [Bradyrhizobium sp. ORS278] Length = 224 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 75/149 (50%), Gaps = 2/149 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPI 131 +P+I ++ LQ + SG DD + KP E++AR+ AI RR R+ E G + Sbjct: 73 LPVIVLTARGGLQDRVGGLRSGADDYLVKPFALEELVARLQAILRRPGQLLGRSLELGNL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 ++ R V G L RE +LE L+ +G+ V K + I+GL E V N VE Sbjct: 133 VYDTESRQTFVGGAPRTLSARELSVLEILLRRQGRVVPKKAVEDHIFGLTGE-VGSNAVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++S+LRK+L + + R +GY + Sbjct: 192 VYVSRLRKQLAEYGATVVIHTIRGVGYMM 220 >gi|323183609|gb|EFZ69006.1| transcriptional regulatory protein qseB [Escherichia coli 1357] Length = 219 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 102/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R Q P++ ++ +L+ ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 L---REWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + R + G+ L +E +LE LM N G+ + + I +Y Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGDPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|187927570|ref|YP_001898057.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12J] gi|187724460|gb|ACD25625.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] Length = 236 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ + +P++ ++ S++ + D G DD + KP E+ ARV A+ RR Sbjct: 66 LKRLRSRGAMLPVLILTAADSVEERVKGLDLGADDYMAKPFALSELEARVRALVRRGTGG 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 GP+ GR + +V L RE +LE L+A G+ V+K Q+ + G + Sbjct: 126 GATLVRHGPLAFDQVGRIAYIHDQVVELSAREIGLLEILLARVGRLVSKEQLVDHLCG-W 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E V N +E +I +LRKK+ + G + + R LGY ++ Sbjct: 185 GEEVSNNAIEVYIHRLRKKIEVE-GI-RIATVRGLGYCLE 222 >gi|152994266|ref|YP_001339101.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150835190|gb|ABR69166.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 221 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 109/228 (47%), Gaps = 23/228 (10%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +LI+D + + DDG +++ SL F E + D+ ++ L G G L Sbjct: 4 LLIEDTTGLGEAVRDQICDDGHAVDWVQSLNFAEASVQATSYDLVLLDLMLPDGNGFDFL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 + R ++ + P+I ++ + ++ ++G DD + KP E+ ARV A+ RR Sbjct: 64 KSLR--KSGNSTPVIILTARDQVSDRIEGLNAGADDYLIKPFDLSELSARVGAVARRYRG 121 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +K+ + + G R+ ++G E L RE + E L+ G ++++Q+ Sbjct: 122 DPNPLVKLGHLEIDLGEHRIKANGLPVE-------LTAREWALFEGLVQRPGTLLSRSQL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +Y F +E N +E +IS+LRK KLG D + + R +GY ++ Sbjct: 175 EDRLYQ-FGAEIESNTIEVYISRLRK----KLGRDVIITVRNMGYRLE 217 >gi|30022904|ref|NP_834535.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|206969682|ref|ZP_03230636.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218231548|ref|YP_002369645.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218900007|ref|YP_002448418.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228903354|ref|ZP_04067485.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|228910691|ref|ZP_04074502.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228923592|ref|ZP_04086872.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228942018|ref|ZP_04104561.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955112|ref|ZP_04117127.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961108|ref|ZP_04122734.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228967956|ref|ZP_04128966.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228974949|ref|ZP_04135510.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981542|ref|ZP_04141839.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|229048543|ref|ZP_04194104.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229112300|ref|ZP_04241839.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|229130118|ref|ZP_04259079.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|229147408|ref|ZP_04275757.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|229153043|ref|ZP_04281224.1| DNA-binding response regulator [Bacillus cereus m1550] gi|229181156|ref|ZP_04308488.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|229193119|ref|ZP_04320074.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|296505302|ref|YP_003667002.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|29898463|gb|AAP11736.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|206735370|gb|EDZ52538.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218159505|gb|ACK59497.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218545331|gb|ACK97725.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228590383|gb|EEK48247.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228602347|gb|EEK59836.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228630463|gb|EEK87111.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228636090|gb|EEK92571.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228653333|gb|EEL09210.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|228671140|gb|EEL26445.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228722807|gb|EEL74191.1| DNA-binding response regulator [Bacillus cereus AH676] gi|228778221|gb|EEM26491.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228784802|gb|EEM32820.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228791737|gb|EEM39329.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228798551|gb|EEM45538.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804622|gb|EEM51226.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817687|gb|EEM63769.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228836061|gb|EEM81422.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228848959|gb|EEM93802.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228856315|gb|EEN00844.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|296326354|gb|ADH09282.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|326942620|gb|AEA18516.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 231 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 65 RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S E +++F + + E L ++E + E L++ + ++ + +A++ Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 DE+ VEEN + +I++LRKK N+LG + +++ R LGY Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENSIETVRGLGY 223 >gi|325264921|ref|ZP_08131649.1| DNA-binding response regulator DltR [Clostridium sp. D5] gi|324029910|gb|EGB91197.1| DNA-binding response regulator DltR [Clostridium sp. D5] Length = 227 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 4/164 (2%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L + R IR H VP+I + ++ +D D G DD + KP E++AR+ A+ RR Sbjct: 60 LSILRSIRQNHINVPVILTTALDTVNDRIDGLDCGADDYLVKPYAIEELMARIRALSRRP 119 Query: 120 KVSNNRAETGPIRVF--SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V + + + D R + + + L RE ++EY + N K +A+ QIF + Sbjct: 120 GVLLEHQDLTFLDLCFTPDSRTLKCKDKEVQLSGREALLMEYFLRNPEKVLAREQIFVRV 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G D +VE+ ++++I LRK L+ + + LGY ++ Sbjct: 180 WG-TDASVEDGNLDTYIYFLRKHLKTLHSQSVITTVHGLGYRLE 222 >gi|323359211|ref|YP_004225607.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275582|dbj|BAJ75727.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 230 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 3/132 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFP 148 ++G DD V KP EI+AR+ AI RR ++ + TG + + D D V Sbjct: 94 LNAGGDDYVTKPFSLDEIVARIQAILRRTMQADEESIIRTGELTMDQDTHDVSVGDVSID 153 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L E ++L YLM N + ++K QI ++ +D + +VES+IS LR+K+ Sbjct: 154 LSPTEFKLLRYLMLNPNRVLSKAQILDHVWE-YDFNGDAGIVESYISYLRRKIDPHSSEP 212 Query: 209 PVDSKRFLGYSI 220 + +KR GY + Sbjct: 213 LIQTKRGFGYML 224 >gi|110680145|ref|YP_683152.1| DNA-binding response regulator, putative [Roseobacter denitrificans OCh 114] gi|109456261|gb|ABG32466.1| DNA-binding response regulator, putative [Roseobacter denitrificans OCh 114] Length = 221 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 F+L++D + +A DG ++ +E D+ ++ L G G Sbjct: 3 FLLVEDNIELAQAVLARLRLDGHVIDHAEKIEDAMAYAQVGDYDLILLDIMLPDGDGRDF 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ R ++ P+I ++ + + D G DD V KP H E+ AR A+ RR Sbjct: 63 LQQHR--QSQKDTPVIVLTARSQVSDRITLLDLGADDYVTKPFDHAELEARCRAVLRRRA 120 Query: 121 VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S +F R V G+ L RE R+LE + G+ +K ++ ++ Sbjct: 121 GSAQTVTQLRDVIFDPVRGSLSVAGQSVKLRNRELRLLELFINAPGQLFSKQKLVDRLFS 180 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +DE V +N +E ++ +LRK L ++L + + R LGYS++ Sbjct: 181 -YDEDVSDNAIEVYVGRLRKHLEPSQL---RIKTSRGLGYSLE 219 >gi|157803257|ref|YP_001491806.1| preprotein translocase subunit SecB [Rickettsia canadensis str. McKiel] gi|157784520|gb|ABV73021.1| preprotein translocase subunit SecB [Rickettsia canadensis str. McKiel] Length = 237 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 7/162 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 L R+ A + P++ +S + F G DD + KP E++AR+ AI RR K Sbjct: 63 LLRLRAAKIKTPILILSSLTDTDQKITGFSFGADDYLTKPFVREELIARIKAIVRRSKGH 122 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S R + + V D R EV+G+ L +E +LE L+ RG + K + +Y Sbjct: 123 VASVFRFD--KVSVNLDTRSVEVEGKKVHLTNKEYAVLELLILRRGTILTKEMFLNHLYN 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 DE + +++ I KLRKKL + G D +D+ GY + Sbjct: 181 SVDEPAIK-IIDVFICKLRKKLSDAAGGRDYIDTVWGRGYML 221 >gi|313672108|ref|YP_004050219.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] gi|312938864|gb|ADR18056.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] Length = 222 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 84/160 (52%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L ++ + ++ P+I ++ +++ + DSG DD + KP E+L+R A+ RR ++ Sbjct: 63 LKKLRKQNNTTPVIMLTAKDTVKDKVLGLDSGSDDYLTKPFSFEELLSRTKAVIRRKYEI 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-L 180 S+ + + + + + + + L +E +LEYL AN+ K +++T I IY Sbjct: 123 SSPIIKVDNLEIDTAKKTVKRANQPIELSAKEYALLEYLAANKNKVLSRTMIIEHIYNEE 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + NV++ I+++R K+ V + R +GY++ Sbjct: 183 FD--FDSNVIDVFINRIRNKIDKNFDKKLVHTIRGMGYAL 220 >gi|225352746|ref|ZP_03743769.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156353|gb|EEG69922.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 243 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 20/172 (11%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI + P++ ++ Q + G DD V KP E++AR+ AI RR + Sbjct: 71 RIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TQE 127 Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E PI + D D G+ L E ++L YLM N G+ ++K QI ++ Sbjct: 128 QVEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRN---------KLGFDP-VDSKRFLGYSI 220 +D + +VES+IS LRKK+ K P +++KR +GY I Sbjct: 188 Q-YDWGGDAAIVESYISYLRKKVDGLTVEDENGEKHKVAPLIETKRGIGYMI 238 >gi|157155786|ref|YP_001463269.1| transcriptional regulatory protein YedW [Escherichia coli E24377A] gi|157161437|ref|YP_001458755.1| transcriptional regulatory protein YedW [Escherichia coli HS] gi|170019701|ref|YP_001724655.1| transcriptional regulatory protein YedW [Escherichia coli ATCC 8739] gi|191169243|ref|ZP_03030996.1| heavy metal response regulator [Escherichia coli B7A] gi|194430371|ref|ZP_03062859.1| heavy metal response regulator [Escherichia coli B171] gi|297516682|ref|ZP_06935068.1| transcriptional regulatory protein YedW [Escherichia coli OP50] gi|300920190|ref|ZP_07136638.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] gi|300951603|ref|ZP_07165432.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1] gi|300956508|ref|ZP_07168794.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1] gi|301327760|ref|ZP_07220962.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1] gi|301644571|ref|ZP_07244563.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1] gi|307312448|ref|ZP_07592082.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|331668658|ref|ZP_08369506.1| transcriptional activator protein CopR [Escherichia coli TA271] gi|157067117|gb|ABV06372.1| heavy metal response regulator [Escherichia coli HS] gi|157077816|gb|ABV17524.1| heavy metal response regulator [Escherichia coli E24377A] gi|169754629|gb|ACA77328.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|190900721|gb|EDV60517.1| heavy metal response regulator [Escherichia coli B7A] gi|194411591|gb|EDX27925.1| heavy metal response regulator [Escherichia coli B171] gi|300316692|gb|EFJ66476.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1] gi|300412786|gb|EFJ96096.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] gi|300449146|gb|EFK12766.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1] gi|300845693|gb|EFK73453.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1] gi|301077107|gb|EFK91913.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1] gi|306907619|gb|EFN38122.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|315061264|gb|ADT75591.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli W] gi|320174282|gb|EFW49439.1| putative two-component system response regulator YedW [Shigella dysenteriae CDC 74-1112] gi|320185520|gb|EFW60287.1| Putative two-component system response regulator YedW [Shigella flexneri CDC 796-83] gi|323378157|gb|ADX50425.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli KO11] gi|323940374|gb|EGB36565.1| heavy metal response regulator [Escherichia coli E482] gi|331063852|gb|EGI35763.1| transcriptional activator protein CopR [Escherichia coli TA271] Length = 260 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254 >gi|325687850|gb|EGD29870.1| DNA-binding response regulator [Streptococcus sanguinis SK72] Length = 218 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 7/160 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR SQ+P++ ++ T L F+ + D V KP ++ R+ I RR Sbjct: 61 LEVLKEIRKTSQIPVMILTALDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRNT 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V++ A G + V D Q E PL ++E IL+ L +G V + Q+ + I+G Sbjct: 121 VASEIA-VGDLTVSIDDCTVYWQSEKMPLTKKEYEILQALAKRKGHLVTRDQLMNTIWGY 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ V+++HI +RKK+ P+ + +GY + Sbjct: 180 SE--LDSRVLDNHIKNIRKKIPGV----PLKTITGMGYQL 213 >gi|310827211|ref|YP_003959568.1| two-component response regulator [Eubacterium limosum KIST612] gi|308738945|gb|ADO36605.1| two-component response regulator [Eubacterium limosum KIST612] Length = 234 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121 IR ++VP++ ++ + F G DD ++KP + E+++RV ++ RR V Sbjct: 71 IREKTRVPILFLTAKDQDSDKVMGFSVGGDDYLSKPFSYTELVSRVKSLLRRYYVYQGSA 130 Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +N+ + + D ++ E+ GE+ L E RILE +M NR K + I+ +I+ Sbjct: 131 PAEKSNKLVIRDLVLDKDAQNVEIGGEIVTLTDIEYRILELMMDNRKKVFSAQNIYESIW 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203 N V HI LRKKL++ Sbjct: 191 NEPYFYSANNTVMVHIRNLRKKLKD 215 >gi|187732444|ref|YP_001879602.1| transcriptional regulator YedW [Shigella boydii CDC 3083-94] gi|187429436|gb|ACD08710.1| heavy metal response regulator [Shigella boydii CDC 3083-94] Length = 260 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254 >gi|148265316|ref|YP_001232022.1| two component transcriptional regulator [Geobacter uraniireducens Rf4] gi|146398816|gb|ABQ27449.1| two component transcriptional regulator, winged helix family [Geobacter uraniireducens Rf4] Length = 225 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 15/188 (7%) Query: 22 DGVSLEGFNSLEFEEWLQSSA-------REDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74 D + GF+S EWL R I L+ G + L++ + IR+ S VP Sbjct: 20 DYLKQSGFDS----EWLADGQAVVPWVKRHGPDLILLDLMLPGRRGLDICKEIRSFSDVP 75 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134 +I I+ L + G DD + KP RE++ARV ++ RR + G I + Sbjct: 76 IIMITARIEEIDRLLGLELGADDYICKPFSPREVVARVKSLLRRTGGRLTASVQGLI-LD 134 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE-AVEENVVESH 193 + + G V L E ++L +L +N G+ +++Q+ IY DE V + ++SH Sbjct: 135 TSRYQATLHGHVLDLTVVEFKLLHFLFSNPGQIYSRSQLMHRIYP--DERIVSDRTIDSH 192 Query: 194 ISKLRKKL 201 + KLRKK+ Sbjct: 193 VKKLRKKI 200 >gi|283787153|ref|YP_003367018.1| two-component system response regulator [Citrobacter rodentium ICC168] gi|282950607|emb|CBG90278.1| two-component system response regulator [Citrobacter rodentium ICC168] Length = 219 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D AL+ DG G ++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDALIGDGIKTGLSKMGFCVDWFTDGRQGKEALHSAPYDAVILDLSLPGMDGRDI 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R + P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 LRDWR--EQGKREPVLILTARDALAQRVEGLRLGADDYLCKPFALIEVAARLEALMRRAS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ G + + R + G L +E +LE LM N+G+ + + I +Y Sbjct: 121 GQASSELCHGQVTLNPGNRVAALNGSALALKPKEFALLELLMRNKGRVLPRKLIEEKLYN 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 181 -WDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|209543371|ref|YP_002275600.1| winged helix family two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209531048|gb|ACI50985.1| two component transcriptional regulator, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 244 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 4/148 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R R + P++ +S Q + F +G DD + KP E+ AR+ A+ Sbjct: 59 GYEVLRATRAAR--RETPIVALSSLGGPQAKVRAFSAGADDYITKPYDAPELAARIQAVV 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K GP+R+ D R+ V G L +E +LE L+ +G + K Sbjct: 117 RRSKGYCQPILHAGPLRLSLDSREVTVNGRPVHLTGKEYLVLELLLLRKGTVLTKYAFLD 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203 +YG DE E +++ I K+RKKL+ Sbjct: 177 HLYGGMDEP-EMKIIDVFICKVRKKLQQ 203 >gi|218439203|ref|YP_002377532.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218171931|gb|ACK70664.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 224 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 2/157 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123 R+ + ++VP+I ++ + + D+G DD + KP E+LARV A RR +N Sbjct: 67 RLRQTGNKVPIILLTAKDEISDRVTGLDAGADDYIIKPFSLEELLARVRANLRRTSENNA 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + +R+ R+ + L +E +LEYLM++ + + + QI ++G +D Sbjct: 127 DEVQFMDLRLNRSSREVYRANRLIELTAKEFDLLEYLMSHPRQVLTREQILERVWG-YDF 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N++E ++ LR KL N + + R +GY + Sbjct: 186 MGDSNIIEVYVRYLRLKLENNQEKRLIQTVRGIGYVL 222 >gi|119944067|ref|YP_941747.1| two component transcriptional regulator, winged helix family protein [Psychromonas ingrahamii 37] gi|119862671|gb|ABM02148.1| two component transcriptional regulator, winged helix family [Psychromonas ingrahamii 37] Length = 230 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 88/178 (49%), Gaps = 8/178 (4%) Query: 47 SAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106 +AI + K + + + R+ + P++ ++ S Q ++ D+G DD + KP + Sbjct: 47 AAIIDLGLPKIDGITVITRLREKNRNFPILILTARDSWQDKVEGLDAGADDYLCKPFYPE 106 Query: 107 EILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E++AR+ A+ RR S +A GP + + + + + E L E +I EY M Sbjct: 107 ELVARLNALIRR---SAGKASPVINNGPFSINTSSLEVKKEHEFISLSASEYKIFEYFML 163 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G+ +KT + IY D ++ NV+E I +LRKKL + +++ R GY + Sbjct: 164 HPGEVKSKTVLTEHIYDQ-DFDLDSNVIEVFIRRLRKKLDPDNEYGLIETLRGQGYRL 220 >gi|89896373|ref|YP_519860.1| hypothetical protein DSY3627 [Desulfitobacterium hafniense Y51] gi|219667799|ref|YP_002458234.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89335821|dbj|BAE85416.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538059|gb|ACL19798.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 228 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 3/144 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR +S +P+I ++ +L ++ G DD + KP R ++A+V + Sbjct: 67 VCRRIRRNSGIPIIILTARSDEDDSLLGYELGADDYLIKPYSPRVLMAKVKRFLEKTSDT 126 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V + G I + R V+G+ L E IL YLM N+G + + Q+ + ++G Sbjct: 127 VEEMQISAGGILLNLGSRCVSVEGDPINLTHTEFEILAYLMQNKGLVITREQLITKLWG- 185 Query: 181 FDEAVEENVVESHISKLRKKLRNK 204 +D +E V SHI LR KL +K Sbjct: 186 YDFYGDEKTVNSHIRNLRSKLGSK 209 >gi|251796137|ref|YP_003010868.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543763|gb|ACT00782.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 224 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 49/204 (24%), Positives = 100/204 (49%), Gaps = 9/204 (4%) Query: 24 VSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGI 78 + +EGF LE + +++ SA+ D+ ++ + EL IR H +P + + Sbjct: 21 LKVEGFEVLEASDGVEALTILDSAKADLVIMDVMM--PNMDGWELCAEIRDHYDLPRLML 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDG 137 + L F+ G DD + KP E++ARV A+ +R ++++++ + G + + Sbjct: 79 TAKGETAQKLKGFELGADDYLVKPFEPLELIARVKALLKRYRIASSQTVQAGDLILDRKT 138 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 +V G+ LP +E +L L + G+ ++ Q+ I+G +D E ++ HI++L Sbjct: 139 YVVQVNGQSMTLPLKEFELLFKLASYPGQSFSRGQLIEEIWG-YDFEGNERTLDVHINRL 197 Query: 198 RKKLRNKLGFDPVDSKRFLGYSID 221 R++ + + R LGY ++ Sbjct: 198 RERFPESQHTFRISTIRGLGYRLE 221 >gi|312797149|ref|YP_004030071.1| transcriptional regulatory protein qseB [Burkholderia rhizoxinica HKI 454] gi|312168924|emb|CBW75927.1| Transcriptional regulatory protein qseB [Burkholderia rhizoxinica HKI 454] Length = 333 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 31/232 (13%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSA----IEAFLIGKG 57 +L++D +++ +G DG +++ W+Q A ++A + L+ G Sbjct: 117 VLLVEDDSMIAEGVRKALRADGWAVD---------WVQDGAAAILAADGEPYDLMLLDLG 167 Query: 58 ---EKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 L++ + +RA V P++ ++ ++ + D+G DD + KP E+ AR+ Sbjct: 168 LPQRDGLDVLKTVRAKKHVFPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMR 227 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP---EVQGEVFP--LPRRERRILEYLMANRGKRV 168 A+ RR RAET IR DP EV E P L RE +LE L+A G + Sbjct: 228 ALVRR---QAGRAET-VIRHRGLTLDPAAREVTLEGVPVALSAREYGLLEALLARPGAVL 283 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +K+Q+ IYG + E + N VE +I LRK KLG + + + R LGY + Sbjct: 284 SKSQLEEKIYG-WGEEIGSNTVEVYIHSLRK----KLGAELIRTVRGLGYMM 330 >gi|291540403|emb|CBL13514.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 234 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 17/169 (10%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S +P+I +S + + G DD V KP + E++ARV + RR N A Sbjct: 71 IREESSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQLGNAA 130 Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E G + + D ++ V GEV L E IL L+ N+GK + QI+ +I+ Sbjct: 131 ENSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIYESIWN 190 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSIDWN 223 D +N V HI +R+K+ +P + + +GY ID N Sbjct: 191 -EDAIGADNTVAVHIRHIREKIE----INPKEPRYLKVVWGVGYKIDKN 234 >gi|289674703|ref|ZP_06495593.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae FF5] gi|330898490|gb|EGH29909.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330937668|gb|EGH41572.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330950073|gb|EGH50333.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae Cit 7] gi|330981459|gb|EGH79562.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 223 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 75/137 (54%), Gaps = 3/137 (2%) Query: 67 IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +RA S+ +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + R Sbjct: 66 LRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLGGER 125 Query: 126 AETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + + + D R + E+ L RE+ +LE L+A G+ ++K Q+ + ++GL DE Sbjct: 126 QQRCGVLAYDLDTRRFTLGEELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFGL-DEE 184 Query: 185 VEENVVESHISKLRKKL 201 + +E ++ +LRKKL Sbjct: 185 ASPDAIEIYVHRLRKKL 201 >gi|295402032|ref|ZP_06811993.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110946|ref|YP_003989262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294975923|gb|EFG51540.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311216047|gb|ADP74651.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 223 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 3/151 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR S VP+I ++ + + G DD + KP E+LAR+ A+ RR Sbjct: 62 ETCKRIREFSDVPIIMVTARDQTLDIVKGLNIGADDYITKPFDEAELLARIEAVLRRSVG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ E + D Q E L +E IL + + + ++ QI +++G + Sbjct: 122 KRSKIEFQGLVWDEDEHKTHYQNEPIFLTPKEFAILGLFLKHPNRVFSREQIIVSLWG-Y 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 + EE ++SH+ +R+KLR ++GF P+D Sbjct: 181 NANTEERTIDSHVKNIREKLR-QVGF-PIDQ 209 >gi|218554547|ref|YP_002387460.1| transcriptional regulatory protein YedW [Escherichia coli IAI1] gi|218361315|emb|CAQ98899.1| DNA-binding response regulator in two-component system with YedV [Escherichia coli IAI1] Length = 223 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 42 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 101 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 102 FSFSELLARVRAQLRQHHALNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 161 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 162 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 >gi|254391205|ref|ZP_05006411.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294813637|ref|ZP_06772280.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197704898|gb|EDY50710.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326236|gb|EFG07879.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 279 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 83/164 (50%), Gaps = 9/164 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121 L R+ R +VP++ ++ +++ + +G DD V KP E++AR+ + RR Sbjct: 115 LARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAA 174 Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S R E+ G + + D R+ G+ L E +L YLM N + ++K QI + Sbjct: 175 SAARGESLLAVGDLTLDEDSREVSRGGQAIHLTATEFELLRYLMRNPRRVLSKAQILDRV 234 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + +D + NVVE ++S LRKK+ G P + ++R GY I Sbjct: 235 WS-YDFGGQANVVELYVSYLRKKI--DAGRAPMIHTRRGAGYLI 275 >gi|152981344|ref|YP_001351979.1| two-components system response regulator [Janthinobacterium sp. Marseille] gi|151281421|gb|ABR89831.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 100/219 (45%), Gaps = 14/219 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + L + GY A DG+ EG EW DV ++ L + + L + Sbjct: 19 KGLKEIGYEATVCADGI--EGMELAVGGEW-------DVIILDRMLPQGMDGLSILAALR 69 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 + P++ +S ++ + +G +D + KP E+ ARV A+ R + + E Sbjct: 70 EMGKRTPVLILSALSAIDERVRGLQAGCNDYLTKPFAFPELAARVEALLRWTQPNEVIRE 129 Query: 128 TG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 ++V R E G L RE R+L Y+M ++G+ + +T + +++ FD Sbjct: 130 LCVEDLKVNLLTRSVERGGRPLSLQPREFRLLVYMMTHKGQVLTRTMLLESVWNYQFDP- 188 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + NV+++HIS+LR K+ + ++R LGY + N Sbjct: 189 -QTNVIDAHISRLRNKVDKGFAVPLIHTRRNLGYILTPN 226 >gi|110613524|gb|ABG78576.1| membrane sensor protein [Salmonella enterica subsp. enterica serovar Paratyphi A] Length = 205 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P++ ++ Q ++ SG DD V KP H E++AR+ A+ RR +++ P Sbjct: 60 LPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSGLASQVINIPPF 119 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 +V R+ V +V L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 120 QVDLSRRELSVNEQVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 178 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +LRKK++ + D + + R GY Sbjct: 179 VLMGRLRKKIQAQYPHDVITTVRGQGY 205 >gi|331677849|ref|ZP_08378524.1| transcriptional activator protein CopR [Escherichia coli H591] gi|331074309|gb|EGI45629.1| transcriptional activator protein CopR [Escherichia coli H591] Length = 260 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254 >gi|327399045|ref|YP_004339914.1| winged helix family two component transcriptional regulator [Hippea maritima DSM 10411] gi|327181674|gb|AEA33855.1| two component transcriptional regulator, winged helix family [Hippea maritima DSM 10411] Length = 223 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 1/149 (0%) Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 +GE +EL +P++ I+ + G DD + KP + +LA+V AI Sbjct: 60 QGEDFIELVSSKEKLKDIPILIITAKTQDDLFAQLLNKGADDFLVKPFSTKVLLAKVNAI 119 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RRLK + I + D V E L + E IL+ + N K ++ +I Sbjct: 120 LRRLKNRTSVISVCGIELNEDEYSILVNSEPIELTKTEFSILKLFLENPNKVFSRDRILE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK 204 +++G ++ V + ++ H+S LRKKL+ K Sbjct: 180 SVWG-YNANVSDRTIDVHLSNLRKKLKEK 207 >gi|300818609|ref|ZP_07098817.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1] gi|300528781|gb|EFK49843.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1] Length = 260 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254 >gi|295096184|emb|CBK85274.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 225 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%) Query: 58 EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 E L L R R+H +P++ ++ Q ++ +G DD V KP H E+ AR+ A+ Sbjct: 59 EDGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALL 118 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR +++ P +V R+ + EV L E I+E L+ N GK V+K + Sbjct: 119 RRNSGLASQVISLPPFQVDLSRREFSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y E E + ++ + +LRKK++ + D + + R GY Sbjct: 179 QLYP-DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQGY 220 >gi|291525728|emb|CBK91315.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] Length = 223 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 6/130 (4%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPR 151 G +D + KP RE++ARV ++ R K ++ + G I D ++ G+V L Sbjct: 93 GAEDYITKPFSVRELVARVNRVFLRRKNDDSSSVIHAGSISYDLDKKEARRDGQVISLSS 152 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 E RIL+ L N K V++ + I+ EA +V + ++ K++R KLG D + Sbjct: 153 LENRILDLLFTNHDKAVSRNAVIDCIW----EATGNDVYDHTVTVYMKRIRVKLGEDVIK 208 Query: 212 SKRFLGYSID 221 + + +GY +D Sbjct: 209 TVKGIGYRVD 218 >gi|270293867|ref|ZP_06200069.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275334|gb|EFA21194.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 229 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 12/153 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G K+ + + + +Q+P+I I+ + T+ F+ G DD ++KP RE+ ARV A+ Sbjct: 61 GFKMASMLKKDKKTAQIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVL 120 Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 RR + E P ++ + + GE PL ++E IL L+ N+G+ + Sbjct: 121 RRTR--QGETEHAPEQIVYKTLVLDIIKKKVCIDGEEAPLTKKEFEILLLLLQNKGRVFS 178 Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201 + I + I+ DE V + ++ +I++LRKK+ Sbjct: 179 REDILNRIWS--DEVYVLDRTIDVNITRLRKKI 209 >gi|225574599|ref|ZP_03783209.1| hypothetical protein RUMHYD_02676 [Blautia hydrogenotrophica DSM 10507] gi|225038213|gb|EEG48459.1| hypothetical protein RUMHYD_02676 [Blautia hydrogenotrophica DSM 10507] Length = 225 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 54/228 (23%), Positives = 106/228 (46%), Gaps = 11/228 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++V+ DD+ + + AL + G ++GF + + D++ ++ L E Sbjct: 4 IYVVEDDKNIREIESFAL-KNAGYEIQGFVCAKDFYTAMLRQKPDLALLDVML--PDEDG 60 Query: 61 LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ R +R+ +P++ ++ + + D G DD + KP E+++RV A+ R Sbjct: 61 LEIVRKLRSDRMTKHIPILMVTAKTTEIDKVKGLDMGADDYMTKPFGVMELISRVKALLR 120 Query: 118 RLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R ++ + GP+ + + R G+ L +E +L LM N G +++ I + Sbjct: 121 RSQIIPEEEVIQVGPVTMDQNKRKVSAYGKACELTYKEYELLHLLMQNAGIVISRDVILN 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++G D E ++ HI LRKKL+ + + R +GY + N Sbjct: 181 RVWGT-DYEGESRTIDMHIKTLRKKLKEAGAM--IQTVRNVGYVFNEN 225 >gi|120435580|ref|YP_861266.1| two-component system response regulator [Gramella forsetii KT0803] gi|117577730|emb|CAL66199.1| two-component system response regulator [Gramella forsetii KT0803] Length = 224 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPI 131 +I IS SL L+ D G DD + KP H E+ +R+ A+ RR + +N I Sbjct: 73 CGVIIISANSSLDNKLEGLDLGADDYITKPFHLAELNSRIKAVLRRGQFGGDNTINFQEI 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE-NVV 190 ++ + R V G+ L R+E +L + + N+G+ ++K I ++G + ++ + + Sbjct: 133 KLDTMARSAYVNGKAITLTRKEYDLLLFFITNQGRVLSKAIIAEHLWGDDSDLLDNFDFI 192 Query: 191 ESHISKLRKKL 201 HI+ LRKKL Sbjct: 193 YVHINNLRKKL 203 >gi|307706889|ref|ZP_07643691.1| response regulator [Streptococcus mitis SK321] gi|307617762|gb|EFN96927.1| response regulator [Streptococcus mitis SK321] Length = 218 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 50/219 (22%), Positives = 103/219 (47%), Gaps = 6/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++G D G E + + +E L+ + +V+ + + LE Sbjct: 4 LIVEDEEMIREGVSDYLTDCG--YETIEAADGQEALEKFSSYEVALVLLDIQMPKLNGLE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR SQVP++ ++ + + + F D + KP + RV AI++R Sbjct: 62 VLAEIRKTSQVPVLMLTAFQDEEYKMSAFAFLADGYLEKPFSLSLLKVRVDAIFKRYYDM 121 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +V + + G+ + +E IL+YL+ N G+ + ++QI A++ D Sbjct: 122 GRVFSYKDAKVDFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKATD 181 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E + V++ +I K+LR KL D + + R +GY ++ Sbjct: 182 EVPFDRVIDVYI----KELRKKLDLDCILTVRNVGYKLE 216 >gi|224476547|ref|YP_002634153.1| putative response regulator protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222421154|emb|CAL27968.1| putative response regulator protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 220 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 77/166 (46%), Gaps = 14/166 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ R IR P+I I+ + D G DD + KP E+LAR+ A RR Sbjct: 61 LEICRKIREVKSTPIIIITAKGDTYDKVAGLDYGADDYIVKPFDIEELLARIRATLRRQP 120 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + RV DG++ E L + E +L+ L N + + QI Sbjct: 121 AKDTITIKGIEIDKAAFRVTIDGQELE-------LTKTEYDLLQLLTENLNHVMQREQIL 173 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G +D VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 174 NHVWG-YDSEVETNVVDVYIRYLRNKLKPFNKEKVIETVRGVGYVI 218 >gi|90416240|ref|ZP_01224172.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [marine gamma proteobacterium HTCC2207] gi|90331965|gb|EAS47179.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [marine gamma proteobacterium HTCC2207] Length = 219 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 8/155 (5%) Query: 70 HSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126 HSQ + ++ ++ + + DSG DD + KP E+LAR+ + RRL + Sbjct: 68 HSQPEIQILILTARSGTEEKITGLDSGADDYLAKPFEVDELLARLRVLERRLGSAKTSLV 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + + + G+ L RRE +L LM N G+ ++ + + +Y + E V Sbjct: 128 AVGDVVLDTTTNMVSMSGQNVELSRREYSLLRSLMENVGRVQTRSVLENRLYS-WGEEVS 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 N +E HI LRK KLG D + + R +GY ++ Sbjct: 187 SNALEVHIHNLRK----KLGSDFIKTVRGVGYRVN 217 >gi|33593530|ref|NP_881174.1| two-component response regulatory protein [Bordetella pertussis Tohama I] gi|33601058|ref|NP_888618.1| two-component response regulatory protein [Bordetella bronchiseptica RB50] gi|33572886|emb|CAE42822.1| two-component response regulatory protein [Bordetella pertussis Tohama I] gi|33575493|emb|CAE32571.1| two-component response regulatory protein [Bordetella bronchiseptica RB50] gi|332382938|gb|AEE67785.1| two-component response regulatory protein [Bordetella pertussis CS] Length = 229 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA + V P++ ++ S++ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLRRLRARNSVLPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRG 119 Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G + GR V + L RE +LE L+A G+ V+KTQ+ + Sbjct: 120 AGGGATIVRHGRLVFDQTGRIATVDDQTLDLSAREVSLLEILLARSGRMVSKTQLVDHLC 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E ++ +LRKKL G + + R LGY ++ Sbjct: 180 E-WGEEVSTNAIEVYVHRLRKKLEPS-GVKII-TVRGLGYCLE 219 >gi|293604304|ref|ZP_06686711.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] gi|292817181|gb|EFF76255.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] Length = 229 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 5/163 (3%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA +S +P++ ++ S++ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLRRLRARNSALPVLILTAADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRG 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + GR V + L RE +LE L+ G+ V+KTQ+ + Sbjct: 120 AGGGATMLKHGRLLFDQTGRVAIVDDQTLDLSAREVSLLEILLTRSGRMVSKTQLVDHLC 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E ++ +LRKKL G V + R LGY ++ Sbjct: 180 E-WGEEVSTNAIEVYVHRLRKKLEPS-GVKIV-TVRGLGYCLE 219 >gi|316936243|ref|YP_004111225.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315603957|gb|ADU46492.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 219 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 15/224 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A++ DG A G S++ + E + +A E + + ++ G V Sbjct: 3 ILVVEDDAMIADGIRAGLSLAGASIDCVSGCE-DARAALAANEFSAVVLDIMLPDGSGV- 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R IRA P++ ++ + D+G DD + KP E+ A + ++ Sbjct: 61 DLLRAIRAAGDTTPVLLLTALDETPDRIAGLDAGADDYLGKPFDLDEL---SARLRAIIR 117 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + RA T GP+R++ + + G L RRE +L LM G ++ ++ Sbjct: 118 RRDGRAATCLEHGPVRLYPAEGNATLDGVSVALSRREFAVLHALMERPGVVRSRAELEER 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG DE V+ N +E HI LR KLG +++ R LGY + Sbjct: 178 LYGWGDE-VDSNAIEVHIHNLRA----KLGRSAIETMRGLGYRM 216 >gi|220916055|ref|YP_002491359.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953909|gb|ACL64293.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] Length = 231 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 9/208 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 + ++++D A V+ A G +E ++ E L DV ++ L G G Sbjct: 7 LVLVVEDEAPVRRFLRAALAAHGYRIEEAGTVAEAEQLAPGHNPDVFLLDLGLPDGDG-- 64 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 ++L R +R ++ P+I +S + + D+G DD + KP E+LARV R Sbjct: 65 -IDLARRLREWTRAPIIVLSARGREEDKVTALDAGADDYLTKPFGVNELLARVRVALRHA 123 Query: 120 KVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + E GP+R+ R+ G L E R+L L N GK + QI Sbjct: 124 QAPPDGPPVVEVGPLRIDLARREITRSGAEVRLTPTEYRVLAMLARNAGKVLTHRQILRE 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204 ++G A E + V +++LRKKL ++ Sbjct: 184 VWG--PNATEAHYVRVQVAELRKKLEDE 209 >gi|163783571|ref|ZP_02178561.1| two component transcriptional regulator, winged helix family protein [Hydrogenivirga sp. 128-5-R1-1] gi|159881191|gb|EDP74705.1| two component transcriptional regulator, winged helix family protein [Hydrogenivirga sp. 128-5-R1-1] Length = 225 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 4/111 (3%) Query: 94 GVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 G DD + KP + RE+LARV A+ RR L +S G + + + ++G + L Sbjct: 94 GADDYITKPFNMRELLARVKALLRRRKKLSLSGETLRVGELEIHTGEMKVLLKGRLVDLT 153 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +E IL+ L++ RGK V++ +I S IY D E +V+++I ++R KL Sbjct: 154 PKEFLILKKLLSKRGKVVSREEIVSEIYS-GDIPYYERIVDTYIYRIRTKL 203 >gi|121597839|ref|YP_990168.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|134284304|ref|ZP_01770993.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|237508768|ref|ZP_04521483.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|242310946|ref|ZP_04809963.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|121225637|gb|ABM49168.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|134244344|gb|EBA44453.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|235000973|gb|EEP50397.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|242134185|gb|EES20588.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] Length = 232 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 10/168 (5%) Query: 55 GKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G+G L+ R +RA S VP+I ++ + + ++G DD + KP E+ ARV+ Sbjct: 70 GRG---LDFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVS 126 Query: 114 AIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ RR + N + G + V R G L E +LE L+ + G ++K Q Sbjct: 127 AVARRYSGNPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQ 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +Y DE V N +E H+S+LRK KLG + +++ R LGY + Sbjct: 187 LEERLYSFSDE-VGSNTIEVHVSRLRK----KLGAELIETVRGLGYRL 229 >gi|56965768|ref|YP_177502.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56912014|dbj|BAD66541.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 226 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 6/139 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123 IR +P+I ++ + + +G DD + KP +E++ARV A RR K+ Sbjct: 69 IRQKHSLPVIMLTARGNEADKVRGLKTGADDYMVKPFSPKELMARVEAALRRANMDKIRG 128 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 R G + + DGR V G + L RRE +L +L N G+ ++ +F ++ D Sbjct: 129 RRLVFGELELDQDGRAVTVAGSLISLTRREYELLLFLAENAGRAFSREHLFERVW--TDT 186 Query: 184 AVEE-NVVESHISKLRKKL 201 A V++HI LR KL Sbjct: 187 AASSLRTVDTHIKTLRLKL 205 >gi|75759288|ref|ZP_00739387.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493237|gb|EAO56354.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 240 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 74 RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 133 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S E +++F + + E L ++E + E L++ + ++ + +A++ Sbjct: 134 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 193 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 DE+ VEEN + +I++LRKK N+LG + +++ R LGY Sbjct: 194 D--DESFVEENTLNVNITRLRKKF-NELGIENSIETVRGLGY 232 >gi|311031361|ref|ZP_07709451.1| two-component response regulator PhoP [Bacillus sp. m3-13] Length = 242 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 99/206 (48%), Gaps = 16/206 (7%) Query: 31 SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLD 89 +++ EE L + E I L+ + +E+ + +R H P++ ++ + Sbjct: 32 AMDGEEGLNKAMEERFDMIVLDLMLPKKDGIEVCKELRQHKIHTPILMLTAKDDEFDKVL 91 Query: 90 FFDSGVDDVVNKPIHHREILARVAAIYRRL----------KVSNNRAET---GPIRVFSD 136 + G DD + KP RE++ARV AI RR+ KV + +E G +++ + Sbjct: 92 GLELGADDYMTKPFSPREVVARVKAILRRMQQMTGNTEAPKVEEDTSEKIVIGDVKILPE 151 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 + + E L +E +L YL N+G+ + + Q+ SA++ +D A + +V+ HIS Sbjct: 152 HYEAYFREERLELTPKEFELLVYLSKNKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISH 210 Query: 197 LRKKLRNKLGFDP-VDSKRFLGYSID 221 LR+K+ + + R LGY ++ Sbjct: 211 LREKIETDTKKPTYIKTIRGLGYKLE 236 >gi|257870881|ref|ZP_05650534.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257805045|gb|EEV33867.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 224 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 7/159 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125 IR S+VP+I IS + + + G DD V KP ++A++ A+ RR N Sbjct: 67 IRETSKVPIIFISSRNTNMDMIMAMNMGADDFVTKPFEIDVLIAKINALLRRSYNYVENN 126 Query: 126 AET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +ET + + D ++ EV L + E R+L LM N GK +++ ++ A++ D Sbjct: 127 SETLVHNGLTLNIDNSSMQINDEVIDLSKNEYRLLYILMKNHGKILSREKLLRALWD--D 184 Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E V++N + +I++LR+K+ + +++K GY + Sbjct: 185 ERFVDDNTLTVNINRLRRKIEQAGMDNYIETKVGQGYIV 223 >gi|288939775|ref|YP_003442015.1| winged helix family two component transcriptional regulator [Allochromatium vinosum DSM 180] gi|288895147|gb|ADC60983.1| two component transcriptional regulator, winged helix family [Allochromatium vinosum DSM 180] Length = 219 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 10/162 (6%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R RA +P++ ++ + +D +G DD + KP H E++AR+ A+ RR Sbjct: 60 LEVLRHWRARGLSLPVLILTARDAWPERVDGLKAGADDYLGKPFHVEELIARLNALTRR- 118 Query: 120 KVSNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N R + D +V GEV L E R+L YLM N G+ ++K Q+ Sbjct: 119 AAGNLRPALAVGGLSLDADRQQVICPDGEVRELTGTEFRLLRYLMLNPGRILSKAQLLEH 178 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y L E +N++E +I ++LR K+G D + + R GY Sbjct: 179 VYELEAER-GDNLIEVYI----RRLREKIGRDRIQTLRGQGY 215 >gi|218130473|ref|ZP_03459277.1| hypothetical protein BACEGG_02062 [Bacteroides eggerthii DSM 20697] gi|217987352|gb|EEC53682.1| hypothetical protein BACEGG_02062 [Bacteroides eggerthii DSM 20697] Length = 229 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 87/177 (49%), Gaps = 18/177 (10%) Query: 39 QSSAREDVSAIEAFLIG------KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFD 92 + + + D+SA L+ G K+ + + + ++VP+I I+ + T+ F+ Sbjct: 37 EEALKLDISAYNLLLLDVMMGEISGFKMASMLKKDKKTAKVPIIFITAKDTENDTVTGFN 96 Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG-------RDPEVQGE 145 G DD ++KP RE+ ARV A+ RR E P ++ + + + GE Sbjct: 97 LGADDYISKPFSLREVAARVKAVLRR--TQQGERERAPEQIVYESLVLDIIKKKVSIDGE 154 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201 PL ++E IL L+ N+G+ ++ I I+ DE V + ++ +I++LRKK+ Sbjct: 155 EAPLTKKEFEILLLLLQNKGRVFSREDILGRIWS--DEVYVLDRTIDVNITRLRKKI 209 >gi|114049392|ref|YP_739942.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|113890834|gb|ABI44885.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 227 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ + P++ ++ S Q ++ D+G DD + KP H E++AR+ A+ RR S Sbjct: 65 RVRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR---SAG 121 Query: 125 RAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +A GP + + + E+ L E ++ E M ++G+ +KT + IY Sbjct: 122 KASPVITNGPFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYDQ 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D ++ NV+E I +LRKKL ++ +++ R GY + Sbjct: 182 -DFDLDSNVIEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220 >gi|30468114|ref|NP_849001.1| ompR-like transcriptional regulator [Cyanidioschyzon merolae strain 10D] gi|30409214|dbj|BAC76163.1| ompR-like transcriptional regulator [Cyanidioschyzon merolae strain 10D] Length = 224 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 15/173 (8%) Query: 42 AREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLDF 90 A + ++A++ F I + V+ +P++ IR S VP++ ++ ++ + Sbjct: 32 ATDGINAVQQFRIHQPHLVILEVMIPKVDGFGVCQWIRTQSNVPIMMVTGLTQVKDKITA 91 Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 F+ G DD V KP REI AR+ + RR + G IR+ + + L Sbjct: 92 FELGADDYVVKPFCAREIEARIKGLLRRTN-QDQSWHLGAIRIHQ--KQVWKHNQPIRLT 148 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 E +LE L+ + G+ V + I I+G + E VV+ HIS+LR KL + Sbjct: 149 EMEWALLELLIRHPGQIVTRQTILKQIWG-YAWPNETRVVDVHISRLRAKLED 200 >gi|319790733|ref|YP_004152373.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315593196|gb|ADU34262.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 229 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 1/111 (0%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 D+G DD + KP E+ AR+ A+ RR K + + G +++ R G LP Sbjct: 99 LDAGADDYLGKPFDLAEVEARLRALVRRAKGTEDIVLLGQLKLDRKARRFSTAGGPLDLP 158 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 RE +L LM+ G+ V+K + + FDE++ +N +E+ IS+LRKKL Sbjct: 159 AREFEVLWELMSPPGRTVSKRALSDKLSS-FDESLGDNALEAFISRLRKKL 208 >gi|212716927|ref|ZP_03325055.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM 16992] gi|212660212|gb|EEB20787.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM 16992] Length = 243 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 20/172 (11%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI + P++ ++ Q + G DD V KP E++AR+ AI RR + Sbjct: 71 RIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TQE 127 Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E PI + D D G+ L E ++L YLM N G+ ++K QI ++ Sbjct: 128 QVEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRN---------KLGFDP-VDSKRFLGYSI 220 +D + +VES+IS LRKK+ K P +++KR +GY I Sbjct: 188 Q-YDWGGDAAIVESYISYLRKKVDGLTVEDENGEKRKVAPLIETKRGIGYMI 238 >gi|297625540|ref|YP_003687303.1| two component system response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|32452353|emb|CAD59399.1| putative two-component system regulatory protein [Propionibacterium freudenreichii subsp. shermanii] gi|296921305|emb|CBL55858.1| two component system response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 242 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 98/205 (47%), Gaps = 20/205 (9%) Query: 31 SLEFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LELPRIIRA-HSQVPLIGI 78 ++ +E W ++A A+ A + + LE+ R +RA VP+I + Sbjct: 36 AMRYEGWEPTTAATGSDAVRAARDTNPDAIVLDMMLPDFDGLEVMRRVRAEQPDVPVIFL 95 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134 + ++ + +G DD V KP E++AR+ ++ RR ++ R+E+ G + + Sbjct: 96 TAKDAVNDRIVGLTAGGDDYVTKPFSVEELMARLRSLLRRSGATSKRSESELIVGDLVLD 155 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D + G+ L E +L YLM N + ++K QI ++ +D + NVVE +I Sbjct: 156 EDSHEVTRGGDEIHLTATEFELLRYLMRNPKRVLSKAQILDRVWN-YDFGGQANVVELYI 214 Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGY 218 S LRKK+ G +P + + R GY Sbjct: 215 SYLRKKI--DAGREPMIHTMRGAGY 237 >gi|73855984|gb|AAZ88691.1| putative 2-component transcriptional regulator [Shigella sonnei Ss046] Length = 280 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 3/159 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 118 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 177 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 178 LNSTLEISGLRMDSVSQSVSRNNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 237 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 FD + N V+ I +LR K+ + + + R +GYS Sbjct: 238 FDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 274 >gi|262042303|ref|ZP_06015468.1| two-component response regulator QseB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040367|gb|EEW41473.1| two-component response regulator QseB [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 219 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 +L++D L+ DG A G S++ F + LE + L S A D + ++ L G G Sbjct: 3 ILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYS-APYDAAILDLTLPGIDGLD 61 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L R H V ++ D +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 62 ILREWRDKGRHEPVLILTARD--ALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRA 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S++ G + + + + GE L +E +LE LM N G+ + + I +Y Sbjct: 120 HGQSSSELHHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D+ V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDDEVSSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|226951618|ref|ZP_03822082.1| transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|226837648|gb|EEH70031.1| transcriptional regulator [Acinetobacter sp. ATCC 27244] Length = 225 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 12/167 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +++ + IR + +P++ IS LQ +D + G DD + KP E+LAR+ A+ RR Sbjct: 61 MQILKQIRQRTAMPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARIHALLRRGN 120 Query: 119 LKVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ N+ T G + + + +GE L RE IL ++ + K +K + Sbjct: 121 TVMNQNKGNTQLLKSGDLILDVEQHLATFKGEQIELSNREWAILIPMVTHPNKIFSKANL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y FD V N +E ++ LR KLG D + + R LGY + Sbjct: 181 EDKLYD-FDSEVTSNTIEVYVHHLRA----KLGKDFIRTIRGLGYRL 222 >gi|15887970|ref|NP_353651.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|15155576|gb|AAK86436.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 225 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 4/163 (2%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L L + +RA S ++P++ ++ + ++ ++G DD + KP E+ AR+ A+ RR Sbjct: 60 LNLVKSLRAASIRIPILFLTAMSGVDDRVEGLEAGGDDYLVKPFAFSELTARINALVRRP 119 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R G + + R G+ L RE +LE LM N G+ + KT I Sbjct: 120 PITTEKTRLRVGDLEMNLVTRTTSRGGQRIDLLPREFSLLELLMRNEGRILTKTMFLEKI 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + F+ + +VVE+HIS+LR K+ + + + GY++ Sbjct: 180 WN-FNFDPQSSVVETHISRLRAKIDKPFDQPLLHTVKNTGYTL 221 >gi|332530381|ref|ZP_08406326.1| two component transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332040192|gb|EGI76573.1| two component transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 225 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 6/150 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGP 130 +P++ ++ +L+ ++ D G DD + KPI E+ AR+ A+ RR +AE G Sbjct: 73 LPVLVLTARDTLEQRIEGLDLGADDYLIKPIALDELAARLRAMLRRATGRATQAEWVHGD 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 +R + Q + L RE +LE L+ N + ++KTQ+ +Y E N + Sbjct: 133 LRYDPASKQVHWQDKPVELTGREISLLEVLLKNPQRVLSKTQLLEQLYDWGGGEPESNAL 192 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E HI LR+K+ + V + R LGY++ Sbjct: 193 EVHIHHLRRKIAPGV----VRTVRGLGYAL 218 >gi|296448535|ref|ZP_06890411.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296253953|gb|EFH01104.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 230 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 14/171 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ + +PRI Q+ ++ ++ ++ +D ++G DD + KP + E++AR+ Sbjct: 57 GDAISIIPRIREKQPQIRIMMLTALDAVDERIDALEAGADDYLTKPFNLDELIARIRVQL 116 Query: 117 RRLKVSNNRAETG--PIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 R R +T P+R+ D R V+GE L R+E +LE L+ + + V+ Sbjct: 117 R------GRGQTALRPVRIGGLSFDLDQRVVTVRGEDVVLARQELLLLEALVRSANRIVS 170 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +++ +YG E V+E+ + S +S+LR +L + S R LGY I Sbjct: 171 RETLYAHLYGRGME-VQEHALTSLVSRLRARLAELDAGVEIRSARALGYRI 220 >gi|291523295|emb|CBK81588.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 229 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 81/181 (44%), Gaps = 20/181 (11%) Query: 41 SAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLD 89 A + A EAF IG VL +P+I IR S VP+I IS S Sbjct: 29 CATDGQKACEAFDIGFYSIVLLDLMIPKITGMNVMKYIRQKSTVPIIIISAKDSDSDKTL 88 Query: 90 FFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETGPIRVFSDGRDPEVQ 143 G DD + KP E++AR+ A RR ++ + GP+ + + Sbjct: 89 GLGLGADDYITKPFSITEVMARIKANIRRNTEYAAVQPEQTKLVWGPLVMNLENHTVTKS 148 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV-EENVVESHISKLRKKLR 202 GE+ L +E IL L+ N + K QI+S I+ D + +EN V HIS+LR K+ Sbjct: 149 GEIIELTAKEFDILRLLLENPQRVYTKAQIYSLIWN--DAYMGDENAVNVHISRLRTKIE 206 Query: 203 N 203 + Sbjct: 207 D 207 >gi|302530364|ref|ZP_07282706.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302439259|gb|EFL11075.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 233 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 7/146 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R SQVP++ ++ + + G DD V KP +E+ RVA++ RR + Sbjct: 65 LEVCRRLRQTSQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELTLRVASVLRRAR 124 Query: 121 VSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + T G +R+ R + G PL RE +L + +++ G ++ + Sbjct: 125 MPRPEPPTAELVDGNLRLQMTARQATLDGAALPLTTREFDLLAFFLSHPGVAFSRADLLE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 ++G + +++ V H+ +LR+K+ Sbjct: 185 KVWGW--DFGDQSTVTVHVRRLREKI 208 >gi|291457450|ref|ZP_06596840.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM 20213] gi|291381285|gb|EFE88803.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM 20213] Length = 243 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 20/172 (11%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI + P++ ++ Q + G DD V KP E++AR+ AI RR + Sbjct: 71 RIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TRE 127 Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E PI + D D G+ L E ++L YLM N G+ ++K QI ++ Sbjct: 128 QVEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLR---------NKLGFDP-VDSKRFLGYSI 220 +D + +VES+IS LRKK+ K P +++KR +GY I Sbjct: 188 Q-YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMI 238 >gi|219855998|ref|YP_002473120.1| hypothetical protein CKR_2655 [Clostridium kluyveri NBRC 12016] gi|219569722|dbj|BAH07706.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 230 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 9/163 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + R + P+I ++ + + DSG DD + KP E+LAR+ A+ RR Sbjct: 65 LKELRRNGIETPVILLTAKGETEDKVRGLDSGADDYLAKPFEAEELLARLRALGRR---K 121 Query: 123 NNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G ++ DP + + F L +E ++LE L+ +G ++K I + Sbjct: 122 SELVNEGILKYGDMKLDPLNLRLSCRKQEFKLTLKECQLLELLIKGKGIIISKNVIVEKL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G ++ VE N VE ++S LRKKLRN + + R GY I Sbjct: 182 WG-YETDVEYNNVEVYVSFLRKKLRNIKSNVFIQTVRGAGYVI 223 >gi|160889014|ref|ZP_02070017.1| hypothetical protein BACUNI_01434 [Bacteroides uniformis ATCC 8492] gi|317479297|ref|ZP_07938432.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] gi|156861481|gb|EDO54912.1| hypothetical protein BACUNI_01434 [Bacteroides uniformis ATCC 8492] gi|316904585|gb|EFV26404.1| response regulator receiver domain-containing protein [Bacteroides sp. 4_1_36] Length = 229 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 78/153 (50%), Gaps = 12/153 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G K+ + + + +Q+P+I I+ + T+ F+ G DD ++KP RE+ ARV A+ Sbjct: 61 GFKMASMLKKDKKTAQIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAARVKAVL 120 Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 RR E P ++ + + GE PL ++E IL L+ N+G+ + Sbjct: 121 RR--TQQGETEHAPEQIVYKTLVLNVIKKKVCIDGEEAPLTKKEFEILLLLLQNKGRVFS 178 Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201 + I + I+ DE V + ++ +I++LRKK+ Sbjct: 179 REDILNRIWS--DEVYVLDRTIDVNITRLRKKI 209 >gi|187926854|ref|YP_001893199.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|241665183|ref|YP_002983542.1| transcriptional regulator [Ralstonia pickettii 12D] gi|187728608|gb|ACD29772.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|240867210|gb|ACS64870.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12D] Length = 221 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 95/203 (46%), Gaps = 14/203 (6%) Query: 28 GFNS------LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 G+N+ ++ ++W+ ++ E + G+G LE R AH VP+I S Sbjct: 25 GYNATWVRRLVDAQKWITTNTFEAIVLDLGLPDGEGHVFLEELRA--AHRDVPVIIASAR 82 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDP 140 +L L D+G DD + KP E++AR+ A+ RR S N+ G + V + Sbjct: 83 DALSERLKGLDAGADDFLVKPFPVDELIARLRAVLRRHAGQSTNQWSVGNLVVEPSQKRV 142 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 G+V L RE ++L L+ + V + + A+Y D +V N +E I LR+ Sbjct: 143 TQDGQVIELTPREYQLLLELVRRAHRWVPRETLMDALYREGD-SVSANALEVVIHHLRR- 200 Query: 201 LRNKLGFDPVDSKRFLGYSIDWN 223 KLG + + + R +GY I N Sbjct: 201 ---KLGNETIQTIRGVGYMIGGN 220 >gi|219669756|ref|YP_002460191.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540016|gb|ACL21755.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 230 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 73/141 (51%), Gaps = 5/141 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120 R +R S +P+I ++ + F+ G DD + KP +E++ARV A+ RR + Sbjct: 65 RDVRERSDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRRSRGNTA 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +S++ GP+++ D + E P RE +L +L N + ++ Q+ ++G Sbjct: 125 ISSSDLLFGPLKIEKDKHRVSIDDEQIPFTPREFELLYFLAKNPSRVFSREQLMETVWG- 183 Query: 181 FDEAVEENVVESHISKLRKKL 201 +D + V++H+ K+R+KL Sbjct: 184 YDFYGDARTVDTHVKKIREKL 204 >gi|300790441|ref|YP_003770732.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799955|gb|ADJ50330.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 226 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 14/215 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66 R LV +G+ A G EG W + DV ++ L G +VL+ R+ Sbjct: 18 RGLVAEGFTADVAHTG--REGL-------WRATEHAYDVVVLDIMLPELSGYEVLK--RL 66 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 A + P++ ++ D FD G DD ++KP ++AR+ A+ RR + Sbjct: 67 RAAENWTPVLMLTAKDGEYDEADAFDLGADDYLSKPFSFVVLIARLRALLRRGAPARPAV 126 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E G +R+ R + L RE +LE+L+ G ++K +I S ++ + Sbjct: 127 LEAGDLRLDPSARTVHRGQKRIELTAREFGLLEFLLRRTGAALSKNEILSHVWDAHYDG- 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +ENVVE +I LR+K+ G +++ R +GY + Sbjct: 186 DENVVEVYIGYLRRKIDAPFGTHTIETVRGVGYRL 220 >gi|300113904|ref|YP_003760479.1| winged helix family two component transcriptional regulator [Nitrosococcus watsonii C-113] gi|299539841|gb|ADJ28158.1| two component transcriptional regulator, winged helix family [Nitrosococcus watsonii C-113] Length = 219 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 9/149 (6%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGP 130 +P++ ++ + L+ +G DD ++KP H E+L RV A+ RR V++ R E G Sbjct: 73 LPVLILTARDAWAERLEGLRAGADDYLSKPFHPDELLLRVQAVLRRSHGTVNSPRLEAGG 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + D + + + L R E R+L M + GK +++ ++ +Y E + NV+ Sbjct: 133 LALDEDRQSVWQGDQEYELTRGEFRLLRCFMLHPGKVLSRMELNEHLYDGESER-DSNVL 191 Query: 191 ESHISKLRKKLRNKLGFDPV-DSKRFLGY 218 E HIS+LR+KL DPV +++R GY Sbjct: 192 EVHISRLRRKL-----GDPVIETRRSQGY 215 >gi|238763581|ref|ZP_04624542.1| Transcriptional regulatory protein baeR [Yersinia kristensenii ATCC 33638] gi|238698213|gb|EEP90969.1| Transcriptional regulatory protein baeR [Yersinia kristensenii ATCC 33638] Length = 239 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 11/183 (6%) Query: 36 EWLQSSAREDVSAIEAF--------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTT 87 +WL + A E V+A+ L+ G + + R IR S VP++ ++ Sbjct: 39 QWLTNGA-EVVAAVRQAPPAIILLDLMLPGSDGISICREIRRFSDVPIMMVTAKTEEIDR 97 Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEV 146 L + G DD + KP RE++ARV I RR + + +E+ P+ + QG Sbjct: 98 LLGLEIGADDYICKPYSPREVVARVKTILRRCQQQREQPSESAPLLIDESRFQASYQGHF 157 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L E R+L+ L G ++ Q+ + +Y + V + ++SHI LR+KL + G Sbjct: 158 LELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY-RVVTDRTIDSHIKNLRRKLESLDG 216 Query: 207 FDP 209 P Sbjct: 217 EKP 219 >gi|77164853|ref|YP_343378.1| two comoponent transcriptional regulator [Nitrosococcus oceani ATCC 19707] gi|254433825|ref|ZP_05047333.1| response regulator receiver domain protein [Nitrosococcus oceani AFC27] gi|76883167|gb|ABA57848.1| two compnent transcriptional regulator, winged helix family [Nitrosococcus oceani ATCC 19707] gi|207090158|gb|EDZ67429.1| response regulator receiver domain protein [Nitrosococcus oceani AFC27] Length = 219 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 9/149 (6%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGP 130 +P++ ++ + L+ +G DD ++KP H E+L RV A+ RR V++ R E G Sbjct: 73 LPVLILTARDAWAERLEGLRAGADDYLSKPFHPDELLLRVQAVLRRSHGTVNSPRLEAGG 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + D + + + L R E R+L M + GK +++ ++ +Y E + NV+ Sbjct: 133 LALDEDRQSVWQGDQEYELTRGEFRLLRCFMLHPGKVLSRMELSEHLYDGESER-DSNVL 191 Query: 191 ESHISKLRKKLRNKLGFDPV-DSKRFLGY 218 E HIS+LR+KL DPV +++R GY Sbjct: 192 EVHISRLRRKL-----GDPVIETRRNQGY 215 >gi|20807496|ref|NP_622667.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20516025|gb|AAM24271.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 229 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 3/161 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR +S +P+I ++ ++ + D G DD V KP E+ ARV A R+ Sbjct: 63 EVLKKIRENSDIPVIMLTAKYEVKDKVRGLDIGADDYVTKPFSIEELFARVRAALRKRNP 122 Query: 122 SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + + D EV QG L ++E +LE+LM N +++ +I +++G Sbjct: 123 SIKKDVLKFAGIVMDLTTHEVRRQGVKIDLTKKEFDLLEFLMRNANIALSREKILRSVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + NVV+ +I LR K+ + + + R +GYS+ Sbjct: 183 -YDYYGDTNVVDVYIRYLRSKIDDPFDRKLIHTIRGVGYSL 222 >gi|89895322|ref|YP_518809.1| hypothetical protein DSY2576 [Desulfitobacterium hafniense Y51] gi|89334770|dbj|BAE84365.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 73/141 (51%), Gaps = 5/141 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120 R +R S +P+I ++ + F+ G DD + KP +E++ARV A+ RR + Sbjct: 65 RDVRERSDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRRSRGNTA 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +S++ GP+++ D + E P RE +L +L N + ++ Q+ ++G Sbjct: 125 ISSSDLLFGPLKIEKDKHRVSIDDEQIPFTPREFELLYFLAKNPSRVFSREQLMETVWG- 183 Query: 181 FDEAVEENVVESHISKLRKKL 201 +D + V++H+ K+R+KL Sbjct: 184 YDFYGDARTVDTHVKKIREKL 204 >gi|67460421|sp|Q99U73|ARLR_STAAN RecName: Full=Response regulator ArlR Length = 214 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 7/160 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR P+I I+ + D G DD + KP E+LAR+ AI RR Sbjct: 61 LEICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-- 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + I V V G L + E +L L N+ + + QI + ++G Sbjct: 119 ----QPQKDIIDVNGTLLKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG- 173 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 174 YNSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 213 >gi|313904165|ref|ZP_07837544.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313470967|gb|EFR66290.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 231 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 73/145 (50%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 ++ R IR S+VP+I ++ + L F+ GVD+ + KP + ++ARV AI RR Sbjct: 65 QVCREIRKESKVPIIMLTARSEERDELLGFELGVDEYIAKPFSPKILVARVEAILRRTNQ 124 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ G + + V G+ L +E +L Y + N G +++ +I + ++ Sbjct: 125 ISADETLSIGGVTINKSAHLASVDGKTMDLSYKEFELLTYFLENAGIALSREKILNNVWN 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR K+ K Sbjct: 185 -YDYFGDARTIDTHVKKLRSKMGEK 208 >gi|290475831|ref|YP_003468723.1| response regulator in two-component regulatory system with PhoQ, regulates gene expression at low [Mg+] (OmpR family) [Xenorhabdus bovienii SS-2004] gi|289175156|emb|CBJ81959.1| response regulator in two-component regulatory system with PhoQ, regulates gene expression at low [Mg+] (OmpR family) [Xenorhabdus bovienii SS-2004] Length = 227 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A+++ + G ++ + + ++ D++ ++ L GE L Sbjct: 3 ILIIEDEAILRHHLTVQLRELGHQVDAAENTKEADYYLKENHPDIAIVDLGL--PGEDGL 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R R+ +P++ ++ + S Q + ++G DD V KP EI AR+ A+ RR Sbjct: 61 SMIRRWRSDQVNLPILILTVHDSWQEKVTVLNAGADDYVTKPFRLEEINARIQALMRRHS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ E P + ++ V L E I+E LM N GK V+K + +Y Sbjct: 121 GLASQLVELSPFLIDLSRKEFSVNKNSIKLTAFEYTIIETLMRNNGKVVSKESLMRQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E + ++ + +LRKK+ N+ + + + R GY D Sbjct: 181 -DAELRESHTIDVLMGRLRKKISNEWSDEVIVTVRGQGYRFD 221 >gi|229060772|ref|ZP_04198127.1| Two-component response regulator [Bacillus cereus AH603] gi|228718419|gb|EEL70051.1| Two-component response regulator [Bacillus cereus AH603] Length = 228 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 7/148 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I ++ TL F+ G DD V KP +LAR + S Sbjct: 64 VCRRIRKKSNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIESRYSS 123 Query: 123 NNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 T I V R V GE + E IL YLM N+G +++ Q+ + Sbjct: 124 TINVSTADTLTSSGIHVHFPSRTVTVDGEDISMTHTEFEILTYLMQNQGIVISREQLITK 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204 I+G ++ A ++ V SHI LR KL K Sbjct: 184 IWG-YEFAGDDRTVNSHIRNLRHKLGEK 210 >gi|229175552|ref|ZP_04303062.1| DNA-binding response regulator [Bacillus cereus MM3] gi|228607948|gb|EEK65260.1| DNA-binding response regulator [Bacillus cereus MM3] Length = 231 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 11/162 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 65 RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S E +++F + + E L ++E + E L++ + ++ + +A++ Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGTEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 DE+ VEEN + +I++LRKK N+LG + +++ R LGY Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223 >gi|226953146|ref|ZP_03823610.1| DNA-binding heavy metal response regulator [Acinetobacter sp. ATCC 27244] gi|294650734|ref|ZP_06728085.1| DNA-binding heavy metal response regulator [Acinetobacter haemolyticus ATCC 19194] gi|226836116|gb|EEH68499.1| DNA-binding heavy metal response regulator [Acinetobacter sp. ATCC 27244] gi|292823380|gb|EFF82232.1| DNA-binding heavy metal response regulator [Acinetobacter haemolyticus ATCC 19194] Length = 237 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 77/147 (52%), Gaps = 5/147 (3%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G ++ E R R +P++ ++ +L L F SG DD + KP E++ R+ A Sbjct: 68 GSGYELCEWLRTERG-LDIPVLMLTARDTLDDKLKGFASGTDDYLVKPFDFNELVVRIRA 126 Query: 115 IYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + +R +VSN++ + + + S + G++ LP + ++L+ LM N K ++K + Sbjct: 127 LIKRAMGEVSNSKLQIHDLVLDSATQQITRAGKIIDLPPIQFKLLKILMRNSPKVISKQE 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRK 199 I ++G DE E + + SHI LRK Sbjct: 187 IVMELWG--DEEPESDALRSHIYNLRK 211 >gi|222110613|ref|YP_002552877.1| winged helix family two component transcriptional regulator [Acidovorax ebreus TPSY] gi|221730057|gb|ACM32877.1| two component transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] Length = 225 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 15/224 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---E 58 ++++D ALV G A G+ L GF S Q+ A +A ++ G Sbjct: 3 ILIVEDNALVASGIQA-----GLELHGFTSDTAGSVAQAQAHMTSRQFDACVLDLGLPDG 57 Query: 59 KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIY 116 + L R RA +P++ ++ +++ + F +G DD + KP +E +L A + Sbjct: 58 DGISLLRQWRAKGLALPVLILTARSTIEDKVAGFQTGTDDYLTKPFDLQELVLRLRALLR 117 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R +++ G +V + G + RRE +L+ L+ G+ ++ Q+ + Sbjct: 118 RAGGRTSDLLALGDCQVNMATGEVTRNGVAIDISRREWALLQALLQAHGRVLSAAQLHDS 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YGL D+ V N V H+ LRK KLG D +D+ R LG+ + Sbjct: 178 LYGL-DQDVGSNTVNVHVHHLRK----KLGADVIDTVRGLGFRL 216 >gi|126463834|ref|YP_001044947.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|126105645|gb|ABN78175.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17029] Length = 220 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 104/227 (45%), Gaps = 21/227 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI------G 55 ++++D ++ DG G+ L GF + A D EA ++ G Sbjct: 3 ILIVEDDPVLADGLQV-----GLRLAGFVPEAVGTLEDARAALDAGRFEAMVLDLMLPDG 57 Query: 56 KGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G LEL +RA + VP++ ++ L + D G DD + KP E+ AR+ A Sbjct: 58 SG---LELLAELRAAREPVPVLVLTARDRLDDRVRGLDLGADDYLGKPFELEELAARLRA 114 Query: 115 IYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR ++ R E + + + G L RE +L LMA+ ++K QI Sbjct: 115 LGRRPAALATTRPEWNGVALDLAAMEASRDGRPVALSPREFAVLRALMAHPRAILSKAQI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E +E N +E H+ KLR KL + GF +++ R +GY + Sbjct: 175 EEQLYG-WQEEIESNAIEVHVHKLRAKLGH--GF--IETVRGVGYRL 216 >gi|76788272|ref|YP_330651.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|77405138|ref|ZP_00782237.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77410895|ref|ZP_00787252.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|76563329|gb|ABA45913.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|77163113|gb|EAO74067.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77176281|gb|EAO79051.1| DNA-binding response regulator [Streptococcus agalactiae H36B] Length = 223 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 3/152 (1%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAET 128 SQV ++ ++ +++ + D G DD + KP E++AR+ A+ RR +VS++ + Sbjct: 71 SQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTNRQVSSDDIQI 130 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 I + + + L +E +LEYL +R + +++ QI ++ +D E N Sbjct: 131 QDITINLSTKQVWRNNNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVWD-YDYDGESN 189 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ I LR+KL N + +KR LGY I Sbjct: 190 IIDVLIKNLRRKLDNNRDGSLIKTKRGLGYVI 221 >gi|26986792|ref|NP_742217.1| DNA-binding heavy metal response regulator, putative [Pseudomonas putida KT2440] gi|148545318|ref|YP_001265420.1| two component heavy metal response transcriptional regulator [Pseudomonas putida F1] gi|167031082|ref|YP_001666313.1| two component heavy metal response transcriptional regulator [Pseudomonas putida GB-1] gi|170719251|ref|YP_001746939.1| two component heavy metal response transcriptional regulator [Pseudomonas putida W619] gi|325272074|ref|ZP_08138510.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] gi|24981387|gb|AAN65681.1|AE016195_2 DNA-binding heavy metal response regulator, putative [Pseudomonas putida KT2440] gi|148509376|gb|ABQ76236.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|166857570|gb|ABY95977.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida GB-1] gi|169757254|gb|ACA70570.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida W619] gi|324102770|gb|EGC00181.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] Length = 224 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 21/175 (12%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VLEL R R + ++ ++ L + ++G DD + KP E+LARV A+ Sbjct: 59 GWQVLELLR--RKNCPSRIMMLTARSRLADKVRGLENGADDYLIKPFEFPELLARVRALM 116 Query: 117 RR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RR ++V++ + R F DG+ ++ + F L L YLM N G Sbjct: 117 RRSDHPASVEVIRVADLELDQSRHRAFRDGQRIDLTTKEFAL-------LHYLMRNTGVV 169 Query: 168 VAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++TQI S ++ + FD + NVVE I +LR K+ + + + R +GY ++ Sbjct: 170 LSRTQIISQVWDMNFD--CDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLE 222 >gi|329923390|ref|ZP_08278872.1| response regulator MprA [Paenibacillus sp. HGF5] gi|328941282|gb|EGG37576.1| response regulator MprA [Paenibacillus sp. HGF5] Length = 232 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 36/230 (15%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L +GY D+G+ +LE + S E D+ ++ L G +EL R IR Sbjct: 22 LESEGYQVTKADNGLDALEAYRSQEV----------DLILLDVML--PGMSGIELLRRIR 69 Query: 69 AH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------- 118 AH S ++ ++ S++ + D G +D + KP E+LAR+ A R Sbjct: 70 AHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQGKPLPEEE 129 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 L ++ + G V DGR L RE +L YL+ N+ + + + QI Sbjct: 130 AAGEWLTAADLKLNEGTREVIRDGRR-------IDLTPREFDLLVYLLKNKRQVLNREQI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +A++G +D + NVV+ +I +RKK+ + + + + R +GY + N Sbjct: 183 LAAVWG-YDYYGDTNVVDVYIRYVRKKIDHGGTQELIHTVRGVGYVLKEN 231 >gi|288941366|ref|YP_003443606.1| two component transcriptional regulator PhoB, winged helix family [Allochromatium vinosum DSM 180] gi|288896738|gb|ADC62574.1| two component transcriptional regulator PhoB, winged helix family [Allochromatium vinosum DSM 180] Length = 228 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 78/151 (51%), Gaps = 8/151 (5%) Query: 57 GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G LEL + ++ + + +P+I IS + + D+G DD + KP RE++ARV Sbjct: 57 GRSGLELAQQLKQNPKTKSIPIIMISARGEEEDRVKGLDTGADDYIAKPFSPREMVARVK 116 Query: 114 AIYRRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A+ RR K + + E G + + + G G + E R+L + MA+ + +++ Sbjct: 117 AVLRRAKPDEATDEIEIGGLVMDNLGHRVTAGGRPIEVAPTEYRLLHFFMAHADRAFSRS 176 Query: 172 QIFSAIYGLFDEA-VEENVVESHISKLRKKL 201 Q+ ++G D+ VEE V+ H+ +LRK L Sbjct: 177 QLLDQVWG--DQVYVEERTVDVHVRRLRKAL 205 >gi|218550275|ref|YP_002384066.1| DNA-binding transcriptional regulator QseB [Escherichia fergusonii ATCC 35469] gi|218357816|emb|CAQ90460.1| DNA-binding response regulator in two-component regulatory system with QseC [Escherichia fergusonii ATCC 35469] Length = 219 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDRLIGDGIKTGLSKMGFSVDWFTGGREGKEALYSAPYDAIILDLTLPGIDGRDI 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R + P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 LREWR--ENGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRAS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++N G + + R + GE PL +E +LE LM N G+ + + I +Y Sbjct: 121 GQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE HI LR+KL + GF + + +GY++ Sbjct: 180 TWDEEVTSNAVEVHIHHLRRKLGS--GF--IRTVHGIGYTL 216 >gi|153953197|ref|YP_001393962.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146346078|gb|EDK32614.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 224 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 4/161 (2%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E + +R ++ +P++ ++ + + F+ G+DD + KPI E+L R+ A+ RR Sbjct: 62 EFAKTVRKQNKNIPILFMTARDDISSKKKGFNIGIDDYMVKPIELDELLMRIEALLRRAN 121 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ R G + + +D + GE PL RE IL L++ + +TQ+ +G Sbjct: 122 IASERKLAVGSLTLNADENMAYLNGEEVPLTVREFEILFKLLSYPKRTFTRTQLMDEFWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E+ V+ I+KLR KL + V + R LGY + Sbjct: 182 IESESTPR-TVDVSITKLRSKLAECKDIEIV-TVRSLGYKV 220 >gi|89901889|ref|YP_524360.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346626|gb|ABD70829.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 239 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 101/215 (46%), Gaps = 32/215 (14%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIG-------KGEKV------LELPRI--------IR 68 ++ E +WL + R++ ++ G K EK L LP++ +R Sbjct: 23 DNTELAQWLGRTLRKEQYTVDCIDNGADADFALKSEKYNLIILDLALPKLDGKEVLRRLR 82 Query: 69 AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 A Q P++ ++ ++Q+ + D G DD + KP E+ AR+ + RR S+ +A Sbjct: 83 ARDDQTPVLILTANNTIQSRVSKLDQGADDYMAKPFEIEELEARIRMLLRR---SSGQAS 139 Query: 128 ----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 G + ++ R+ + ++ L RER +LE L+ G V K + +++ L ++ Sbjct: 140 PLIACGDLSYNTNTREFHISQQLLALTPRERAVLEMLLRKSGTTVTKHALAQSLFSLSED 199 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 A + +E ++ +LRKKL + + + R LGY Sbjct: 200 A-STDAIEIYVHRLRKKLEHSSA--QIMTLRGLGY 231 >gi|148254885|ref|YP_001239470.1| putative two-component response regulator [Bradyrhizobium sp. BTAi1] gi|146407058|gb|ABQ35564.1| putative two-component response regulator [Bradyrhizobium sp. BTAi1] Length = 224 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 2/154 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 R +P+I ++ LQ + SG DD + KP E++AR+ AI RR R+ Sbjct: 68 RGSDPLPVIVLTARGGLQDRVGGLRSGADDYLVKPFALEELVARLEAILRRPGQLLGRSL 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 E G + ++ R V G RE +LE L+ +G+ V K + I+GL E V Sbjct: 128 ELGNLVYDTESRQTFVAGTPRTFSARELSVLEILLRRQGRVVPKKAVEDHIFGLTGE-VG 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N VE ++S+LRK+L + + R +GY + Sbjct: 187 SNAVEVYVSRLRKQLSEYGATVVIHTIRGVGYMM 220 >gi|23464633|ref|NP_695236.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|46190381|ref|ZP_00206445.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum DJO10A] gi|189438868|ref|YP_001953949.1| response regulator [Bifidobacterium longum DJO10A] gi|227546731|ref|ZP_03976780.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239620707|ref|ZP_04663738.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132322|ref|YP_003999661.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|317481711|ref|ZP_07940743.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|322689673|ref|YP_004209407.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322691634|ref|YP_004221204.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|23325190|gb|AAN23872.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|189427303|gb|ACD97451.1| Response regulator [Bifidobacterium longum DJO10A] gi|227212693|gb|EEI80574.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239516283|gb|EEQ56150.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516232|emb|CBK69848.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum subsp. longum F8] gi|311773616|gb|ADQ03104.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|316916825|gb|EFV38215.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|320456490|dbj|BAJ67112.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320461009|dbj|BAJ71629.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 243 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 20/172 (11%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI + P++ ++ Q + G DD V KP E++AR+ AI RR + Sbjct: 71 RIRQEGINAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TRE 127 Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E PI + D D G+ L E ++L YLM N G+ ++K QI ++ Sbjct: 128 QVEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLR---------NKLGFDP-VDSKRFLGYSI 220 +D + +VES+IS LRKK+ K P +++KR +GY I Sbjct: 188 Q-YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMI 238 >gi|325289382|ref|YP_004265563.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324964783|gb|ADY55562.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 227 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 13/170 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++L + IR +S +P+I ++ + G DD + KP + ARV A+ RR + Sbjct: 61 MDLCKEIRTYSNIPIIMLTACDLETDEVSGLLVGADDYITKPFSLSVLRARVEALLRRTE 120 Query: 121 V-SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S + +G ++ F G + E+ P+ E R+L +LM N G+ ++K QI Sbjct: 121 SESRHIIHSGKYKLDAELCKFFRGEEEEI-----PISATEYRLLSFLMTNAGQVLSKEQI 175 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S ++ V+EN + +IS+LR KL + +P K G WN Sbjct: 176 LSFLWDNEGNFVDENTLPVNISRLRAKLEDDPK-NPQTIKTIHGIGYIWN 224 >gi|291438629|ref|ZP_06578019.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341524|gb|EFE68480.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 268 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 8/163 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ R VP++ ++ S++ + +G DD V KP E++AR+ + RR + Sbjct: 105 LGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRGLIRRSGAA 164 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + RA + G + + D + GE L E +L +LM N + ++K QI ++ Sbjct: 165 DRRAGSLLVVGDLTLDEDSHEVTRAGEGIHLTATEFELLRFLMRNPRRVLSKAQILDRVW 224 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +D NVVE +IS LRKK+ G +P + ++R GY I Sbjct: 225 S-YDFGGHANVVELYISYLRKKI--DAGREPMIHTRRGAGYMI 264 >gi|238922420|ref|YP_002935934.1| two-component system, OmpR family, response regulator [Eubacterium eligens ATCC 27750] gi|238874092|gb|ACR73800.1| two-component system, OmpR family, response regulator [Eubacterium eligens ATCC 27750] Length = 236 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 3/153 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAE 127 A Q+P++ I+ S F SG DD + KP++ E++ RV A+ RR ++ N ++ Sbjct: 83 AGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQILNEHKIV 142 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G D E LP++E +L L A+ + K Q+ ++G EA + Sbjct: 143 IGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPDRTFTKQQLMDEVWGYETEA-DP 201 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +E HI ++R++ ++ F+ V + R +GY + Sbjct: 202 HTIEVHIGRIRERFKDNPDFEIV-TMRGIGYKV 233 >gi|224540237|ref|ZP_03680776.1| hypothetical protein BACCELL_05150 [Bacteroides cellulosilyticus DSM 14838] gi|224518116|gb|EEF87221.1| hypothetical protein BACCELL_05150 [Bacteroides cellulosilyticus DSM 14838] Length = 229 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 12/153 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G K+ L + + +QVP+I I+ + T+ F+ G DD ++KP RE++ARV A+ Sbjct: 61 GFKMASLLKKDKKTAQVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVL 120 Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 RR E P ++ + + GE PL ++E IL L+ ++G+ + Sbjct: 121 RR--TQQGEPERAPEQISYKTLVIDIVKKKVSIDGEEAPLTKKEFEILLLLLQSKGRVFS 178 Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201 + I + I+ DE V + ++ +I++LRKK+ Sbjct: 179 REDILARIWS--DEVYVLDRTIDVNITRLRKKI 209 >gi|158341219|ref|YP_001522417.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158311460|gb|ABW33071.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 247 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 9/167 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKV 121 R IR S+VP+I ++ + + + G DD + KP +E+ +RV I RR LK Sbjct: 76 RAIRKTSRVPIIMLTALSEVGDRITGLEMGADDYMVKPFSPKELESRVRCIIRRMGSLKP 135 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N R G + + ++ R E L E +LE L + G V++ ++ + Sbjct: 136 FNYRVTGVLNIGSLHIDTNKRKVFRGQERIILTHMEFSLLELLASTPGAVVSRQELLEKV 195 Query: 178 YGLFDEA-VEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +G + + V+ VV+ H+S+LR KL+ N++G + + + R +GY++ Sbjct: 196 WGYSNGSIVDSRVVDVHVSRLRNKLKANQVGTELIHTIRGVGYTLKC 242 >gi|314938355|ref|ZP_07845646.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314942278|ref|ZP_07849126.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314951415|ref|ZP_07854465.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314993174|ref|ZP_07858559.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314996059|ref|ZP_07861136.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313589748|gb|EFR68593.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313592351|gb|EFR71196.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313596372|gb|EFR75217.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313598895|gb|EFR77740.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313642253|gb|EFS06833.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] Length = 229 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 75/140 (53%), Gaps = 7/140 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVS 122 IR S+VP+I IS + + + G DD V KP ++A++ A+ RR ++S Sbjct: 72 IREVSKVPIIFISSRNTNMDMIMAMNMGADDFVTKPFQIDVLIAKINALLRRSYNYTELS 131 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + I + D E+ GE+ L + E R+L LM + GK +++ ++ A++ D Sbjct: 132 SEMMSHNGITLNVDNGSMEINGEIIDLSKNEYRLLFILMKHNGKILSREKLLRALWD--D 189 Query: 183 EA-VEENVVESHISKLRKKL 201 E V++N + +I++LR+K+ Sbjct: 190 ERFVDDNTLTVNINRLRRKI 209 >gi|312623478|ref|YP_004025091.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] gi|312203945|gb|ADQ47272.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] Length = 223 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSN- 123 IR S+VP++ IS + + G DD + KP + A+V A+ RR VSN Sbjct: 67 IRKISKVPIMFISSASDNMNIIMAINMGGDDFIEKPFDLNVLTAKVHALIRRTYSFVSNI 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N E + + + Q + L + E +IL+ LM N G+ V++ +I ++ D Sbjct: 127 NLIEYKGVILNLNNTTLLYQNKKIELTKNEYKILQLLMENAGRVVSREEIMQHLWQ-SDS 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 +++N + +I++LRKKL +LG + + +K+ +GY ID Sbjct: 186 FIDDNTLTVNITRLRKKLA-ELGLENFIKTKKGIGYIID 223 >gi|258543851|ref|ZP_05704085.1| DNA-binding heavy metal response regulator [Cardiobacterium hominis ATCC 15826] gi|258520891|gb|EEV89750.1| DNA-binding heavy metal response regulator [Cardiobacterium hominis ATCC 15826] Length = 229 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 24/161 (14%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----------LKVS 122 P++ +S + ++ +G DD + KP E+LARV A+ RR L+V+ Sbjct: 73 TPVLILSALGEVDDRVEGLAAGGDDYLVKPYAFSELLARVQALTRRRGGEIQDQMMLEVA 132 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181 + + + +V GR +Q RE R+LEYLM+N G+ V +T + ++ F Sbjct: 133 DLQLDRLKRKVTRSGRKINLQP-------REFRLLEYLMSNAGQVVTRTMLLEKVWEYHF 185 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 D + NV++ HIS+LR K+ FDP + ++R GYS+ Sbjct: 186 DP--QTNVIDVHISRLRSKIDKD--FDPPLIHTERGAGYSL 222 >gi|229552020|ref|ZP_04440745.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229314597|gb|EEN80570.1| response regulator [Lactobacillus rhamnosus LMS2-1] Length = 227 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 27/215 (12%) Query: 6 DDRALVKD----GYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 D +AL+KD Y + DG+ +L F+ + D+ ++ L GE Sbjct: 15 DIQALLKDVLTPTYTVIQAYDGIQALTAFHR----------EQPDLIILDLMLPNVTGES 64 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 VL IR SQVP++ ++ T+ G +D + KP E+LAR+ R++ Sbjct: 65 VL---TTIRKTSQVPVLVLTAIQEKAKTVALLQQGANDYLTKPFDIDELLARIQVQLRQV 121 Query: 120 K----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++N++ + G I++ V + LP++E +L +M + + K+Q++ Sbjct: 122 SGQPLMTNDQLKVGEIQLDPKRHVVTVNQQTLTLPKKEYDMLALMMRDPHQVFDKSQLYE 181 Query: 176 AIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDP 209 ++G F A +N + HIS LR K+ N+L DP Sbjct: 182 HVWGEPFLNA--DNTLNVHISNLRTKI-NELAHDP 213 >gi|229095884|ref|ZP_04226862.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229101998|ref|ZP_04232711.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|229114837|ref|ZP_04244250.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228668529|gb|EEL23958.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228681385|gb|EEL35549.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228687508|gb|EEL41408.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 218 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 58 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 117 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E G+ L +E +L +L + G+ ++ Q+ ++ Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEADGDPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199 >gi|163759095|ref|ZP_02166181.1| putative two-component response regulator transcriptional regulatory protein [Hoeflea phototrophica DFL-43] gi|162283499|gb|EDQ33784.1| putative two-component response regulator transcriptional regulatory protein [Hoeflea phototrophica DFL-43] Length = 241 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 5/131 (3%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLP 150 +G DD + KP E+LAR+ + RR + G + + + G+ PL Sbjct: 109 AGGDDYLTKPYAFSELLARIEILGRRKGARDQETTYRVGDLELDRLSHEVRRAGQPIPLQ 168 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209 RE R+LEYLM N G+ V +T + ++ FD + NV++ HIS+LR K+ G Sbjct: 169 PREYRLLEYLMKNAGQVVTRTMLLEHVWDYHFDP--QTNVIDVHISRLRSKIEKDFGEPL 226 Query: 210 VDSKRFLGYSI 220 + + R GY + Sbjct: 227 LKTVRGAGYMM 237 >gi|70728820|ref|YP_258569.1| DNA-binding response regulator TctD [Pseudomonas fluorescens Pf-5] gi|68343119|gb|AAY90725.1| DNA-binding response regulator TctD [Pseudomonas fluorescens Pf-5] Length = 223 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + Sbjct: 63 LARLRARGKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLG 122 Query: 123 NNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + + D R + E+ L RE+ +LE L+A G+ ++K Q+ S ++GL Sbjct: 123 GERQQRCGVLAYDLDTRRFTLGEELLTLTSREQAVLEALIARPGRVMSKEQLASQVFGL- 181 Query: 182 DEAVEENVVESHISKLRKKL 201 DE + +E ++ +LRKKL Sbjct: 182 DEEASPDAIEIYVHRLRKKL 201 >gi|293364938|ref|ZP_06611655.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307703191|ref|ZP_07640137.1| response regulator [Streptococcus oralis ATCC 35037] gi|331266859|ref|YP_004326489.1| DNA-binding response regulator [Streptococcus oralis Uo5] gi|291316388|gb|EFE56824.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307623266|gb|EFO02257.1| response regulator [Streptococcus oralis ATCC 35037] gi|326683531|emb|CBZ01149.1| DNA-binding response regulator [Streptococcus oralis Uo5] Length = 225 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP + +LA+V + RR Sbjct: 67 IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + + D QGEV L + E +IL L + G VA+ + ++ D Sbjct: 127 SLLEYAGVILNTKSMDLHYQGEVLSLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +GF +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLVGF--IETKKGIGYGL 222 >gi|239930282|ref|ZP_04687235.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 256 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 8/163 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ R VP++ ++ S++ + +G DD V KP E++AR+ + RR + Sbjct: 93 LGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRGLIRRSGAA 152 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + RA + G + + D + GE L E +L +LM N + ++K QI ++ Sbjct: 153 DRRAGSLLVVGDLTLDEDSHEVTRAGEGIHLTATEFELLRFLMRNPRRVLSKAQILDRVW 212 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +D NVVE +IS LRKK+ G +P + ++R GY I Sbjct: 213 S-YDFGGHANVVELYISYLRKKI--DAGREPMIHTRRGAGYMI 252 >gi|229593403|ref|YP_002875522.1| phosphate regulon two-component system response regulator [Pseudomonas fluorescens SBW25] gi|312963904|ref|ZP_07778375.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas fluorescens WH6] gi|229365269|emb|CAY53596.1| phosphate regulon two-component system, response regulator [Pseudomonas fluorescens SBW25] gi|311281939|gb|EFQ60549.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas fluorescens WH6] Length = 229 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 102/213 (47%), Gaps = 24/213 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 +++DD A +++ IA+ + + G++ LE E Q+ A + D+ ++ L Sbjct: 6 ILIVDDEAPIRE-MIAV----ALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--P 58 Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ +P+I ++ + + G DD + KP RE++AR+ Sbjct: 59 GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR ++ A PI V DP + G+ + E R+L++ M ++ + Sbjct: 119 AVLRRAGPTDGEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ ++G + VEE V+ HI +LRK L Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207 >gi|209884019|ref|YP_002287876.1| DNA-binding response regulator [Oligotropha carboxidovorans OM5] gi|209872215|gb|ACI92011.1| DNA-binding response regulator [Oligotropha carboxidovorans OM5] Length = 220 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 6/170 (3%) Query: 52 FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 ++ G+ + L + R P+I ++ + + + G DD + KP E+LAR Sbjct: 52 MMLPDGQGITFLRDLRRKGCVTPVIIMTALDQISDRIQGLNVGADDYMTKPFDLSELLAR 111 Query: 112 VAAIYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + A+ RR + N + G +++ R G L RE +LE + + G+ ++K Sbjct: 112 LNAVGRRYSGNPNPLVKIGDLQIDLAARTITRGGRPVNLTAREWALLEAFIQHPGQVLSK 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Q+ +Y F VE N +E H+S++RK KLG V++ R +GY + Sbjct: 172 EQLEERLYA-FGAEVESNTIEVHVSRMRK----KLGSAIVETVRGIGYRL 216 >gi|161367585|ref|NP_288428.2| transcriptional regulatory protein YedW [Escherichia coli O157:H7 str. EDL933] gi|161984954|ref|YP_407518.2| transcriptional regulatory protein YedW [Shigella boydii Sb227] gi|162139781|ref|NP_310734.2| transcriptional regulatory protein YedW [Escherichia coli O157:H7 str. Sakai] gi|209919389|ref|YP_002293473.1| transcriptional regulatory protein YedW [Escherichia coli SE11] gi|218689962|ref|YP_002398174.1| transcriptional regulatory protein YedW [Escherichia coli ED1a] gi|218705460|ref|YP_002412979.1| transcriptional regulatory protein YedW [Escherichia coli UMN026] gi|254161973|ref|YP_003045081.1| transcriptional regulatory protein YedW [Escherichia coli B str. REL606] gi|254793621|ref|YP_003078458.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7 str. TW14359] gi|256017840|ref|ZP_05431705.1| transcriptional regulatory protein YedW [Shigella sp. D9] gi|260844365|ref|YP_003222143.1| putative DNA-binding response regulator in two-component system with YedV [Escherichia coli O103:H2 str. 12009] gi|260855938|ref|YP_003229829.1| putative DNA-binding response regulator in two-component system with YedV [Escherichia coli O26:H11 str. 11368] gi|260868559|ref|YP_003234961.1| putative DNA-binding response regulator in two-component system with YedV [Escherichia coli O111:H- str. 11128] gi|312973814|ref|ZP_07787986.1| transcriptional activator protein irlR [Escherichia coli 1827-70] gi|209912648|dbj|BAG77722.1| two-component response regulator [Escherichia coli SE11] gi|218427526|emb|CAR08421.2| DNA-binding response regulator in two-component system with YedV [Escherichia coli ED1a] gi|218432557|emb|CAR13450.1| DNA-binding response regulator in two-component system with YedV [Escherichia coli UMN026] gi|242377633|emb|CAQ32391.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli BL21(DE3)] gi|253973874|gb|ACT39545.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli B str. REL606] gi|253978068|gb|ACT43738.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli BL21(DE3)] gi|254593021|gb|ACT72382.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli O157:H7 str. TW14359] gi|257754587|dbj|BAI26089.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli O26:H11 str. 11368] gi|257759512|dbj|BAI31009.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli O103:H2 str. 12009] gi|257764915|dbj|BAI36410.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli O111:H- str. 11128] gi|310332409|gb|EFP99644.1| transcriptional activator protein irlR [Escherichia coli 1827-70] gi|320647173|gb|EFX16006.1| transcriptional regulatory protein YedW [Escherichia coli O157:H- str. 493-89] gi|320652458|gb|EFX20756.1| transcriptional regulatory protein YedW [Escherichia coli O157:H- str. H 2687] gi|320657782|gb|EFX25552.1| transcriptional regulatory protein YedW [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|323152702|gb|EFZ38974.1| transcriptional activator protein irlR [Escherichia coli EPECa14] gi|323158555|gb|EFZ44569.1| transcriptional activator protein irlR [Escherichia coli E128010] gi|323174649|gb|EFZ60269.1| transcriptional activator protein irlR [Escherichia coli LT-68] gi|323180780|gb|EFZ66320.1| transcriptional activator protein irlR [Escherichia coli 1180] gi|323183951|gb|EFZ69338.1| transcriptional activator protein irlR [Escherichia coli 1357] gi|327253104|gb|EGE64758.1| transcriptional activator protein irlR [Escherichia coli STEC_7v] gi|332095480|gb|EGJ00496.1| transcriptional activator protein irlR [Shigella dysenteriae 155-74] gi|332096928|gb|EGJ01917.1| transcriptional activator protein irlR [Shigella boydii 3594-74] gi|332343693|gb|AEE57027.1| transcriptional activator protein IrlR [Escherichia coli UMNK88] Length = 223 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 3/159 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 121 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 FD + N V+ I +LR K+ + + + R +GYS Sbjct: 181 FDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 >gi|18310175|ref|NP_562109.1| two-component response regulator [Clostridium perfringens str. 13] gi|110800369|ref|YP_695848.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168205438|ref|ZP_02631443.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168209683|ref|ZP_02635308.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168213127|ref|ZP_02638752.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|168217845|ref|ZP_02643470.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|169346754|ref|ZP_02865707.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|18144854|dbj|BAB80899.1| two-component response regulator [Clostridium perfringens str. 13] gi|110675016|gb|ABG84003.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|169297106|gb|EDS79227.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|170663026|gb|EDT15709.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170712265|gb|EDT24447.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170715454|gb|EDT27636.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|182380100|gb|EDT77579.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 225 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 26/218 (11%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L+K+GY +G LE + L+ E + + I+ F L +++R Sbjct: 20 LLKEGYTVFKAVNG--LEALDILKKEHIHLALLDVMMDGIDGF---------NLLKMLRE 68 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVS--NNRA 126 SQ+P+I ++ + G DD V KP E++AR+ + RR K S N Sbjct: 69 WSQIPVIFLTAKIEDDDKILGLGLGADDYVIKPFKPVELMARIKSNLRRCYKYSGENELI 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV- 185 + G + + +G + GE+ L +E +ILE LM+N G+ K QI+ ++ +E + Sbjct: 129 KIGNLELSKEGCTVKKDGEIVTLNAKEFKILEMLMSNIGRVFTKKQIYENVWQ--EEYLG 186 Query: 186 EENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 ++N + HIS LR K+ DP + + R +GY Sbjct: 187 DDNTIMVHISHLRDKIEE----DPKNPCKIKTIRGIGY 220 >gi|309777330|ref|ZP_07672291.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308914871|gb|EFP60650.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 223 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 18/207 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + D L+ ++ E + LQ A + ++ L G GE++ Sbjct: 7 ILIVEDDETIHEMIKEYLQKDYTCLDAYSGTEAQLLLQQ-ADASLVLLDLMLPGMSGEQL 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ + Q+P+I +S S+ + + G DD + KP +E+ AR+ R+ Sbjct: 66 LQELK----QKQLPIIVLSAKDSIDDRVTLLNEGADDYLCKPFDLKELKARIQVQLRK-- 119 Query: 121 VSNNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N +TG +R+ D R E++G L R E RILE LM + + K +I+ Sbjct: 120 --RNPQQTGELAVNGVRLLPDFRHMELEGSSIRLTRHEYRILELLMQDVKRARTKKEIYE 177 Query: 176 AIYGLFDEAV-EENVVESHISKLRKKL 201 Y D+ + ++ + HIS +R KL Sbjct: 178 --YAWEDDYLGDDKTINVHISNIRSKL 202 >gi|293374348|ref|ZP_06620675.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325841243|ref|ZP_08167344.1| putative response regulator protein GraR [Turicibacter sp. HGF1] gi|292647011|gb|EFF64994.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325489924|gb|EGC92271.1| putative response regulator protein GraR [Turicibacter sp. HGF1] Length = 223 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S VP+I ++ S L + G DD + KP + + +LAR+++I +R S + + Sbjct: 67 VRKSSDVPIIVVTSRDSELDELMSMNLGADDFITKPYNTQILLARISSILKRTYGSLSAS 126 Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ET G S+G Q + L + E +IL L+ N+G+ V++ + ++ D Sbjct: 127 ETLCYKGLTLNLSNGSITYEQ-KTMELTKNELKILGCLIKNQGQIVSRDVLMEHLWK-SD 184 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V++N + ++++LRKKL D ++++R LGY Sbjct: 185 LFVDDNTLSVNVTRLRKKLEEIGLKDAIETRRGLGY 220 >gi|291615563|ref|YP_003518305.1| QseB [Pantoea ananatis LMG 20103] gi|291150593|gb|ADD75177.1| QseB [Pantoea ananatis LMG 20103] gi|327395832|dbj|BAK13254.1| transcriptional regulatory protein QseB [Pantoea ananatis AJ13355] Length = 223 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 5/205 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D L+ DG A G S++ F S E ++A D ++ L + L Sbjct: 3 ILLIEDDRLIGDGIKAGLSKLGFSVDWFVSGEAGFQALTAAPWDAVVLDLSLPER--DGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R R VP++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 61 DILRQWRQQGHDVPVLILTARDALDQRVEGLQMGADDYLCKPFALTEVAARLQALIRRRH 120 Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 G + + E GE L RE +LE M N + + ++Q+ +Y Sbjct: 121 GQLQPELRHGDVVLIPGNLCVERNGENIALKSRELALLELFMRNPDRVLTRSQLEEKLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D V N VE HI LRKKL N+ Sbjct: 180 TWDTEVSSNAVEVHIHHLRKKLGNR 204 >gi|257126355|ref|YP_003164469.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257050294|gb|ACV39478.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 224 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 78/152 (51%), Gaps = 4/152 (2%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAET 128 H+ V ++ D S + D G DD + KP E++AR+ A+ RR S+N+ Sbjct: 72 HTSVLMLTARD--SADDKVKGLDLGADDYIVKPFDFNELMARIRAVVRRKYGNSSNKLMI 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + + + G+ L +E +LEYLM ++ + +++ QI ++ FD + N Sbjct: 130 GNLVLNTSEKSVTRGGKQIELTGKEYEVLEYLMQSKNRILSRDQIKEHVWD-FDYEGDSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ I +RKK+ + G + +KR LGY I Sbjct: 189 IIDVLIKNIRKKIDVEGGKQIIYTKRGLGYVI 220 >gi|331271106|ref|YP_004385815.1| two component transcriptional (response) regulator [Clostridium botulinum BKT015925] gi|329127601|gb|AEB77543.1| Two component transcriptional (response) regulator [Clostridium botulinum BKT015925] Length = 230 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 13/151 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E IIR P++ +S + L F G DD + KP +E+ AR+ + RR Sbjct: 61 IEFCSIIRKKVSCPILFVSAKILEEDKLQAFAIGGDDYITKPFSLKELKARIESHLRR-- 118 Query: 121 VSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R ++ + + S G D +GE L +E ++++LM N+ +K + Sbjct: 119 --EERIKSKEVYILSSGNIILDAVAHDILCKGEKLKLTNKEYNMVKFLMLNKNIVFSKEK 176 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G+ E+ E V ES I +RKK++N Sbjct: 177 LLDNVWGMDSESYLETVTES-IKNIRKKIKN 206 >gi|313124174|ref|YP_004034433.1| DNA-binding response regulator, ompr family (rec-whth domains) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280737|gb|ADQ61456.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325685788|gb|EGD27861.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 237 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 12/175 (6%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L + ED AI L+ LE+ R +R P+I ++ S+ + D G DD Sbjct: 38 LDRALSEDFDAILLDLMLPDLNGLEIARRVRQSKTTPIIMMTARDSVIDRVSGLDHGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETG-PIRVFSDGRDPEVQ----------GEV 146 + KP E+LAR+ A+ RR+K+ + ++ P + +D ++ G+ Sbjct: 98 YIVKPFAIEELLARLRAVLRRVKIEKDASKDKLPRQKVVKFKDLTIETANRIVHRGDGKT 157 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L +RE +L L+ N+ V + Q+ + I+G + +E NVVE ++ LR K+ Sbjct: 158 VDLTKREYNLLMTLIENKNNVVGRDQLLNKIWG-PESNIETNVVEVYVRYLRNKI 211 >gi|227494381|ref|ZP_03924697.1| response regulator PhoP [Actinomyces coleocanis DSM 15436] gi|226832115|gb|EEH64498.1| response regulator PhoP [Actinomyces coleocanis DSM 15436] Length = 252 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 4/159 (2%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122 R+ A +++P++ ++ ++ + G DD V KP E++AR+ AI RR V Sbjct: 92 RLRNAGTRIPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMDSVD 151 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + + + D + G L E ++L YLM N G+ V+K QI ++ +D Sbjct: 152 DGILRIADLELDEDAYEVRRDGVELELSPTEFKLLRYLMINEGRVVSKMQILDHVWE-YD 210 Query: 183 EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + +VES+IS LR+KL ++ D + ++R +GY + Sbjct: 211 WEGDAAIVESYISYLRRKLAVHEDSKDLIHTRRGVGYML 249 >gi|218133928|ref|ZP_03462732.1| hypothetical protein BACPEC_01817 [Bacteroides pectinophilus ATCC 43243] gi|217991303|gb|EEC57309.1| hypothetical protein BACPEC_01817 [Bacteroides pectinophilus ATCC 43243] Length = 240 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 3/162 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IRA P++ ++ + ++ G DD ++KP E+ AR+ A RR Sbjct: 79 ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 138 Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ R G + + + + + P + E I E+L NRG+ +K QI A++G Sbjct: 139 EHSVRMVLGRVCIQMSQKKLLMDDKELPFTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 197 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 FD ++ + +HI +R K + + P+ + LG W Sbjct: 198 FDNESNDSTIITHIKNIRAKFAD-YDYMPIKTVCSLGIGYKW 238 >gi|188534102|ref|YP_001907899.1| DNA-binding transcriptional regulator PhoP [Erwinia tasmaniensis Et1/99] gi|188029144|emb|CAO97016.1| Two-component response regulator of virulence determinants [Erwinia tasmaniensis Et1/99] Length = 222 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 2/149 (1%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIR 132 P++ ++ Q ++ ++G DD V KP H E++AR+ A+ RR +++ P + Sbjct: 74 PILVLTARDGWQAKVEALEAGADDYVTKPFHIEEVVARLQALMRRNCGLASQIITLQPFQ 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + R+ + + L E ILE L+ N GK V+K + +Y E E + ++ Sbjct: 134 IDLSRREVTIHERLLKLTAFEYTILETLIRNAGKVVSKDSLMLQLYP-DAELRESHTIDV 192 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +LRKK++ + + + + R LGY D Sbjct: 193 LMGRLRKKIQAEYAQEVITTVRGLGYRFD 221 >gi|167035384|ref|YP_001670615.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166861872|gb|ABZ00280.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 223 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 70/130 (53%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPI 131 +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + R + GP+ Sbjct: 73 LPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLGGERQQRCGPL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 D R + + L RE+ +LE L+A G+ ++K Q+ + ++GL DE + +E Sbjct: 133 VYDLDTRRFTLGADNLTLTSREQSVLEALIARPGRVMSKEQLAAQVFGL-DEEASPDAIE 191 Query: 192 SHISKLRKKL 201 +I +LRKKL Sbjct: 192 IYIHRLRKKL 201 >gi|70725405|ref|YP_252319.1| hypothetical protein SH0404 [Staphylococcus haemolyticus JCSC1435] gi|68446129|dbj|BAE03713.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 222 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S VP++ IS + G DD + KP + + ++ A+ RR L VSN Sbjct: 66 IRKTSNVPIMFISSRTDNMDQIMAIQMGGDDFIEKPFNLSLTVTKIQALLRRTYDLAVSN 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N ++ D + E L E +IL L N GK V++T + + + Sbjct: 126 NEVTVKNCKLVVDEATLYHEDESVQLSFTELQILNMLFRNEGKYVSRTALIEKCWE-SEN 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL++ D +++K+ +GY + Sbjct: 185 FIDDNTLAVNMTRLRKKLQSIGVVDLIETKKNVGYKV 221 >gi|223984939|ref|ZP_03635042.1| hypothetical protein HOLDEFILI_02344 [Holdemania filiformis DSM 12042] gi|223963108|gb|EEF67517.1| hypothetical protein HOLDEFILI_02344 [Holdemania filiformis DSM 12042] Length = 222 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 7/139 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--AAIYRRLKVSNN 124 IR S +P+I +S + T ++ G DD V KP + E+LAR+ I + + Sbjct: 67 IRKFSDIPIIIVSAKDLVLTKVELLRLGADDYVTKPFNLEELLARIERCLIRNQKTLPEM 126 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + +G + + + + + + L +E +ILE LM K +K ++ A++ +EA Sbjct: 127 QIVSGDLVLDTQSKSVSIHDTILSLTAKEYQILELLMKYPNKVFSKQNLYEAVW---NEA 183 Query: 185 V--EENVVESHISKLRKKL 201 + +V+ +HIS LRKKL Sbjct: 184 FARDNDVMNTHISNLRKKL 202 >gi|154684868|ref|YP_001420029.1| YclJ [Bacillus amyloliquefaciens FZB42] gi|154350719|gb|ABS72798.1| YclJ [Bacillus amyloliquefaciens FZB42] Length = 227 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 19/200 (9%) Query: 12 KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71 K+G+ A F DGV EG+ E+W D+ ++ L + + R IR S Sbjct: 22 KEGFEAEFVHDGV--EGYQRFTEEDW-------DLVILDIMLPSMDG--VTICRKIRETS 70 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV------SNNR 125 VP+I ++ + + F+ G DD V KP ++AR+ A+ RR + S++ Sbjct: 71 SVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYRATGQAVKSDDL 130 Query: 126 AETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 ET + R+ + G+ V L +E +L YL N + ++ Q+ ++G + Sbjct: 131 IETACFSINKKTREVFLHGKPVENLTPKEFDLLFYLAQNPRQVFSREQLLEQVWG-YQFY 189 Query: 185 VEENVVESHISKLRKKLRNK 204 +E V+ HI +LRKKL ++ Sbjct: 190 GDERTVDVHIKRLRKKLSSE 209 >gi|326789239|ref|YP_004307060.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326540003|gb|ADZ81862.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 219 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 1/136 (0%) Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 ++ P I ++ +++ + G DD + KP E+LARV A+ RR + + Sbjct: 63 VLEQMKDTPTILLTAKSNVEDRVKGLVMGADDYIIKPFEMLELLARVEAVLRRTRKEEDV 122 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E ++V R ++G++ +E +LE L+ NR +++ ++ I+G +D Sbjct: 123 FEVKEVKVEFGSRKIYLRGKLVDCTPKEYELLEVLIKNRNVALSREKLLEMIWG-YDYMG 181 Query: 186 EENVVESHISKLRKKL 201 E V+ HI +LRKKL Sbjct: 182 ETRTVDVHIQRLRKKL 197 >gi|126657203|ref|ZP_01728369.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] gi|126621474|gb|EAZ92185.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110] Length = 225 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 88/163 (53%), Gaps = 4/163 (2%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + L + +RA+ + P++ ++ +++ + D+G DD + KP E+ ARV A+ RR Sbjct: 60 ISLCQQLRANGCKTPILMLTARDTIKDRVKGLDAGADDYLIKPFDLEELSARVRALLRRG 119 Query: 120 KVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + S + G + V + Q +V L +E R+LE+ + + + +++Q+ ++ Sbjct: 120 ETSLPPILSWGELCVDPSSCEVTYQQQVLSLSPKEYRLLEFFLRHPRRMFSRSQLLDHLW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 + D+ EE V++HIS LR+KL+ L D +++ LGY + Sbjct: 180 AM-DQIPEEATVKAHISSLRQKLKTAGLESDVIETVYGLGYRL 221 >gi|220929522|ref|YP_002506431.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999850|gb|ACL76451.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 238 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 6/130 (4%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPL 149 G DD + KP RE++ARV A++RR+ +N G I++ R+ ++ + Sbjct: 99 GADDYITKPFSVRELIARVKALFRRVNTTNEPKIEVLSHGEIKIDCTRREVYKGDKLLEM 158 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFD 208 P +E +L+ L+ N+GK +++ + I+G FD E V+ HI LR+K+ N Sbjct: 159 PLKEFELLKMLVLNKGKVLSREHLLDKIWG-FDYYGETRTVDVHIRYLRQKIEDNDDNPT 217 Query: 209 PVDSKRFLGY 218 +++ R +GY Sbjct: 218 YIETVRGIGY 227 >gi|253577429|ref|ZP_04854745.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843229|gb|EES71261.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 228 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 4/162 (2%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RL 119 E+ R++R + + V +I ++ ++ + G DD V KP E+LAR+ A R + Sbjct: 67 EVCRLLRKNGENVSIIMLTAKDEVEDRVKGLTIGADDYVVKPFSFEELLARIGARLRNQF 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 GP R+ ++ +V L E +L+YL+ N G ++KT I ++G Sbjct: 127 PALFGEVVIGPFRLDDRRKEIAYLDQVLELSPTEYELLKYLILNHGIVLSKTTILDKVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D EEN+VE +I LR+KL ++ + + R GY +D Sbjct: 187 -YDFGGEENIVEVYIRSLREKLNDR-EHRLIRTLRGAGYRVD 226 >gi|222099537|ref|YP_002534105.1| Response regulator [Thermotoga neapolitana DSM 4359] gi|221571927|gb|ACM22739.1| Response regulator [Thermotoga neapolitana DSM 4359] Length = 220 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 6/143 (4%) Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+I+ H + +I ++ ++ L F++G DD V KP + +LARV R K Sbjct: 60 ELCRMIKEEHPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPDILLARVKRFLERQK 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + G ++V + G ++G+ LPRRE IL +L+ N GK V + ++ + Sbjct: 120 --KNLYDFGELKVDATGATVYLKGKRIHLPRREFEILLFLVENAGKVVTREKLLETFW-- 175 Query: 181 FDEAVEENVVESHISKLRKKLRN 203 +E V V++ I ++RK + + Sbjct: 176 -EEPVSPRAVDTVIKRIRKAIED 197 >gi|254250133|ref|ZP_04943453.1| Response regulator receiver [Burkholderia cenocepacia PC184] gi|124876634|gb|EAY66624.1| Response regulator receiver [Burkholderia cenocepacia PC184] Length = 236 Score = 61.2 bits (147), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 12/157 (7%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R +P I I+ + + DSG DD + KP E+LAR+ A+ RR RA+ Sbjct: 84 RRDENLPAIIITARDGVPDRIAGLDSGADDYLVKPFELDELLARIRAVNRR---HAGRAQ 140 Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 T GP+R+ + + PL +E +L LM G +++ Q +Y + E Sbjct: 141 TTLAIGPLRLDPVKHLVWLDDDEVPLSPKEFVLLHELMREPGAVISREQFEERLYS-WGE 199 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E N V+ HI LRK KLG D + + R +GY I Sbjct: 200 EIESNAVQVHIHNLRK----KLGHDMIRTVRGVGYRI 232 >gi|229553724|ref|ZP_04442449.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229312895|gb|EEN78868.1| response regulator [Lactobacillus rhamnosus LMS2-1] Length = 237 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L + +RA + P++ ++ +L + F+ G DD + KP H E++ R+ A+ +R Sbjct: 69 FDLLKQLRAKQVKTPVLILTAKDALTDKVRGFELGGDDYLTKPFHREELIMRLKALLKRT 128 Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + GP V + + + + L +E +L YL+ N+ + K QIF + Sbjct: 129 GHFFDEDGLTAGPFEVHLNRHEVLIHDKPVALNGKEFDLLVYLLQNQKTIITKDQIFDRL 188 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +G FD +VVE ++S LRKKL+ + + R +GY Sbjct: 189 WG-FDSDTAVSVVEVYMSNLRKKLKPMQADVWIKTIRNVGY 228 >gi|213691593|ref|YP_002322179.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523054|gb|ACJ51801.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457681|dbj|BAJ68302.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 243 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 20/172 (11%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI + P++ ++ Q + G DD V KP E++AR+ AI RR + Sbjct: 71 RIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TRE 127 Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E PI + D D G+ L E ++L YLM N G+ ++K QI ++ Sbjct: 128 QVEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLR---------NKLGFDP-VDSKRFLGYSI 220 +D + +VES+IS LRKK+ K P +++KR +GY I Sbjct: 188 Q-YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMI 238 >gi|83592836|ref|YP_426588.1| signal transduction histidine kinase with CheB and CheR activity [Rhodospirillum rubrum ATCC 11170] gi|83575750|gb|ABC22301.1| Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity [Rhodospirillum rubrum ATCC 11170] Length = 1483 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 23/201 (11%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 L+DD A ++D AL DDG+ +E + S E F + E I+A+L G G +L Sbjct: 1279 LVDDDASLRDSLRALLEDDGLKVEDYESSEAFLAAYRPGGGEACLLIDAYLPGMSGLDLL 1338 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R+ + + +P I I+ Y + + +G D + KP+ E+L +I R L+ Sbjct: 1339 E--RLKKENRLLPAIVITGYSEVAMAVQAMKAGASDFIEKPVGRTELL---ISIDRALEQ 1393 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR-GKRVAKTQIFSAIYGL 180 +G +R++ D + + L R+R I+E ++A + K +A Sbjct: 1394 HREHGNSGKMRLWRDA----AKARLASLSARQREIMEMVLAGQPSKNIAA---------- 1439 Query: 181 FDEAVEENVVESHISKLRKKL 201 D + + VESH + + KKL Sbjct: 1440 -DLGISQRTVESHRALIMKKL 1459 >gi|24112549|ref|NP_707059.1| DNA-binding transcriptional regulator PhoP [Shigella flexneri 2a str. 301] gi|26247378|ref|NP_753418.1| DNA-binding transcriptional regulator PhoP [Escherichia coli CFT073] gi|30062677|ref|NP_836848.1| DNA-binding transcriptional regulator PhoP [Shigella flexneri 2a str. 2457T] gi|74311689|ref|YP_310108.1| DNA-binding transcriptional regulator PhoP [Shigella sonnei Ss046] gi|82544383|ref|YP_408330.1| DNA-binding transcriptional regulator PhoP [Shigella boydii Sb227] gi|82777259|ref|YP_403608.1| DNA-binding transcriptional regulator PhoP [Shigella dysenteriae Sd197] gi|91210286|ref|YP_540272.1| DNA-binding transcriptional regulator PhoP [Escherichia coli UTI89] gi|110641307|ref|YP_669037.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 536] gi|110805158|ref|YP_688678.1| DNA-binding transcriptional regulator PhoP [Shigella flexneri 5 str. 8401] gi|117623315|ref|YP_852228.1| DNA-binding transcriptional regulator PhoP [Escherichia coli APEC O1] gi|157159002|ref|YP_001462399.1| DNA-binding transcriptional regulator PhoP [Escherichia coli E24377A] gi|170681232|ref|YP_001744047.1| DNA-binding transcriptional regulator PhoP [Escherichia coli SMS-3-5] gi|187730593|ref|YP_001879938.1| DNA-binding transcriptional regulator PhoP [Shigella boydii CDC 3083-94] gi|191168321|ref|ZP_03030113.1| DNA-binding response regulator PhoP [Escherichia coli B7A] gi|191173098|ref|ZP_03034631.1| DNA-binding response regulator PhoP [Escherichia coli F11] gi|193066242|ref|ZP_03047294.1| DNA-binding response regulator PhoP [Escherichia coli E22] gi|194429552|ref|ZP_03062073.1| DNA-binding response regulator PhoP [Escherichia coli B171] gi|194433627|ref|ZP_03065903.1| DNA-binding response regulator PhoP [Shigella dysenteriae 1012] gi|194437080|ref|ZP_03069179.1| DNA-binding response regulator PhoP [Escherichia coli 101-1] gi|209918387|ref|YP_002292471.1| DNA-binding transcriptional regulator PhoP [Escherichia coli SE11] gi|218553708|ref|YP_002386621.1| DNA-binding transcriptional regulator PhoP [Escherichia coli IAI1] gi|218558012|ref|YP_002390925.1| DNA-binding transcriptional regulator PhoP [Escherichia coli S88] gi|218689083|ref|YP_002397295.1| DNA-binding transcriptional regulator PhoP [Escherichia coli ED1a] gi|218694664|ref|YP_002402331.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 55989] gi|218700347|ref|YP_002407976.1| DNA-binding transcriptional regulator PhoP [Escherichia coli IAI39] gi|218704604|ref|YP_002412123.1| DNA-binding transcriptional regulator PhoP [Escherichia coli UMN026] gi|227886513|ref|ZP_04004318.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 83972] gi|237706884|ref|ZP_04537365.1| virulence transcriptional regulatory protein phoP [Escherichia sp. 3_2_53FAA] gi|253773846|ref|YP_003036677.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161237|ref|YP_003044345.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B str. REL606] gi|256018614|ref|ZP_05432479.1| DNA-binding transcriptional regulator PhoP [Shigella sp. D9] gi|260843446|ref|YP_003221224.1| DNA-binding response regulator PhoP in two-component regulatory system with PhoQ [Escherichia coli O103:H2 str. 12009] gi|260854812|ref|YP_003228703.1| DNA-binding response regulator PhoP in two-component regulatory system with PhoQ [Escherichia coli O26:H11 str. 11368] gi|260867559|ref|YP_003233961.1| DNA-binding response regulator PhoP in two-component regulatory system with PhoQ [Escherichia coli O111:H- str. 11128] gi|293409496|ref|ZP_06653072.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B354] gi|293414421|ref|ZP_06657070.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B185] gi|293433418|ref|ZP_06661846.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B088] gi|298380261|ref|ZP_06989866.1| DNA-binding transcriptional regulator PhoP [Escherichia coli FVEC1302] gi|300816833|ref|ZP_07097053.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300821086|ref|ZP_07101235.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300896841|ref|ZP_07115336.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300922660|ref|ZP_07138757.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300928312|ref|ZP_07143848.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300938702|ref|ZP_07153426.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300975596|ref|ZP_07173075.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|300982385|ref|ZP_07176083.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|301024584|ref|ZP_07188256.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|301051080|ref|ZP_07197914.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|301328495|ref|ZP_07221561.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|306814020|ref|ZP_07448193.1| DNA-binding transcriptional regulator PhoP [Escherichia coli NC101] gi|307310093|ref|ZP_07589743.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|309788200|ref|ZP_07682806.1| transcriptional regulatory protein phoP [Shigella dysenteriae 1617] gi|309796524|ref|ZP_07690931.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|331646389|ref|ZP_08347492.1| transcriptional regulatory protein PhoP [Escherichia coli M605] gi|331652181|ref|ZP_08353200.1| transcriptional regulatory protein PhoP [Escherichia coli M718] gi|331657194|ref|ZP_08358156.1| transcriptional regulatory protein PhoP [Escherichia coli TA206] gi|331662541|ref|ZP_08363464.1| transcriptional regulatory protein PhoP [Escherichia coli TA143] gi|331667531|ref|ZP_08368395.1| transcriptional regulatory protein PhoP [Escherichia coli TA271] gi|331682636|ref|ZP_08383255.1| transcriptional regulatory protein PhoP [Escherichia coli H299] gi|332279682|ref|ZP_08392095.1| DNA-binding response regulator in two-component system response regulatory system with PhoQ [Shigella sp. D9] gi|81724595|sp|Q83RR0|PHOP_SHIFL RecName: Full=Virulence transcriptional regulatory protein phoP gi|81741528|sp|Q8CXZ9|PHOP_ECOL6 RecName: Full=Transcriptional regulatory protein phoP gi|26107779|gb|AAN79978.1|AE016759_252 Transcriptional Regulatory protein phoP [Escherichia coli CFT073] gi|24051444|gb|AAN42766.1| transcriptional regulatory protein [Shigella flexneri 2a str. 301] gi|30040925|gb|AAP16655.1| transcriptional regulatory protein [Shigella flexneri 2a str. 2457T] gi|73855166|gb|AAZ87873.1| transcriptional regulatory protein [Shigella sonnei Ss046] gi|81241407|gb|ABB62117.1| transcriptional regulatory protein [Shigella dysenteriae Sd197] gi|81245794|gb|ABB66502.1| transcriptional regulatory protein [Shigella boydii Sb227] gi|91071860|gb|ABE06741.1| transcriptional regulatory protein [Escherichia coli UTI89] gi|110342899|gb|ABG69136.1| transcriptional regulatory protein PhoP [Escherichia coli 536] gi|110614706|gb|ABF03373.1| transcriptional regulatory protein [Shigella flexneri 5 str. 8401] gi|115512439|gb|ABJ00514.1| transcriptional regulatory protein PhoP [Escherichia coli APEC O1] gi|157081032|gb|ABV20740.1| DNA-binding response regulator PhoP [Escherichia coli E24377A] gi|170518950|gb|ACB17128.1| DNA-binding response regulator PhoP [Escherichia coli SMS-3-5] gi|187427585|gb|ACD06859.1| DNA-binding response regulator PhoP [Shigella boydii CDC 3083-94] gi|190901616|gb|EDV61373.1| DNA-binding response regulator PhoP [Escherichia coli B7A] gi|190906643|gb|EDV66249.1| DNA-binding response regulator PhoP [Escherichia coli F11] gi|192926091|gb|EDV80733.1| DNA-binding response regulator PhoP [Escherichia coli E22] gi|194412426|gb|EDX28727.1| DNA-binding response regulator PhoP [Escherichia coli B171] gi|194418056|gb|EDX34149.1| DNA-binding response regulator PhoP [Shigella dysenteriae 1012] gi|194424063|gb|EDX40051.1| DNA-binding response regulator PhoP [Escherichia coli 101-1] gi|195182817|dbj|BAG66393.1| two-component response regulator protein [Escherichia coli O111:H-] gi|209911646|dbj|BAG76720.1| two-component transcriptional regulator [Escherichia coli SE11] gi|218351396|emb|CAU97102.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli 55989] gi|218360476|emb|CAQ98030.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli IAI1] gi|218364781|emb|CAR02471.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli S88] gi|218370333|emb|CAR18136.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli IAI39] gi|218426647|emb|CAR07475.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli ED1a] gi|218431701|emb|CAR12583.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli UMN026] gi|222032882|emb|CAP75622.1| Transcriptional regulatory protein phoP [Escherichia coli LF82] gi|226898094|gb|EEH84353.1| virulence transcriptional regulatory protein phoP [Escherichia sp. 3_2_53FAA] gi|227836717|gb|EEJ47183.1| DNA-binding transcriptional regulator PhoP [Escherichia coli 83972] gi|242376932|emb|CAQ31653.1| phoP [Escherichia coli BL21(DE3)] gi|253324890|gb|ACT29492.1| two component transcriptional regulator, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973138|gb|ACT38809.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli B str. REL606] gi|253977352|gb|ACT43022.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli BL21(DE3)] gi|257753461|dbj|BAI24963.1| DNA-binding response regulator PhoP in two-component regulatory system with PhoQ [Escherichia coli O26:H11 str. 11368] gi|257758593|dbj|BAI30090.1| DNA-binding response regulator PhoP in two-component regulatory system with PhoQ [Escherichia coli O103:H2 str. 12009] gi|257763915|dbj|BAI35410.1| DNA-binding response regulator PhoP in two-component regulatory system with PhoQ [Escherichia coli O111:H- str. 11128] gi|281178240|dbj|BAI54570.1| two-component transcriptional regulator [Escherichia coli SE15] gi|281600563|gb|ADA73547.1| Virulence transcriptional regulatory protein phoP [Shigella flexneri 2002017] gi|291324237|gb|EFE63659.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B088] gi|291434479|gb|EFF07452.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B185] gi|291469964|gb|EFF12448.1| DNA-binding transcriptional regulator PhoP [Escherichia coli B354] gi|294490321|gb|ADE89077.1| DNA-binding response regulator PhoP [Escherichia coli IHE3034] gi|298279959|gb|EFI21467.1| DNA-binding transcriptional regulator PhoP [Escherichia coli FVEC1302] gi|300297252|gb|EFJ53637.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|300307222|gb|EFJ61742.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300359323|gb|EFJ75193.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300396509|gb|EFJ80047.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300410259|gb|EFJ93797.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|300421009|gb|EFK04320.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300456347|gb|EFK19840.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300463698|gb|EFK27191.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300526385|gb|EFK47454.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300530607|gb|EFK51669.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300845102|gb|EFK72862.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|305852657|gb|EFM53105.1| DNA-binding transcriptional regulator PhoP [Escherichia coli NC101] gi|306909811|gb|EFN40305.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|307553131|gb|ADN45906.1| DNA-binding response regulator PhoP [Escherichia coli ABU 83972] gi|307627398|gb|ADN71702.1| DNA-binding transcriptional regulator PhoP [Escherichia coli UM146] gi|308119836|gb|EFO57098.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|308924052|gb|EFP69553.1| transcriptional regulatory protein phoP [Shigella dysenteriae 1617] gi|312945692|gb|ADR26519.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O83:H1 str. NRG 857C] gi|313650392|gb|EFS14799.1| transcriptional regulatory protein phoP [Shigella flexneri 2a str. 2457T] gi|315060407|gb|ADT74734.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli W] gi|315287473|gb|EFU46884.1| response regulator receiver domain protein [Escherichia coli MS 110-3] gi|315293102|gb|EFU52454.1| response regulator receiver domain protein [Escherichia coli MS 153-1] gi|315296599|gb|EFU55894.1| response regulator receiver domain protein [Escherichia coli MS 16-3] gi|320175636|gb|EFW50728.1| Transcriptional regulatory protein PhoP [Shigella dysenteriae CDC 74-1112] gi|320179170|gb|EFW54128.1| Transcriptional regulatory protein PhoP [Shigella boydii ATCC 9905] gi|320184387|gb|EFW59198.1| Transcriptional regulatory protein PhoP [Shigella flexneri CDC 796-83] gi|320195867|gb|EFW70492.1| Transcriptional regulatory protein PhoP [Escherichia coli WV_060327] gi|320201026|gb|EFW75610.1| Transcriptional regulatory protein PhoP [Escherichia coli EC4100B] gi|323153124|gb|EFZ39389.1| transcriptional regulatory protein phoP [Escherichia coli EPECa14] gi|323163674|gb|EFZ49496.1| transcriptional regulatory protein phoP [Escherichia coli E128010] gi|323165638|gb|EFZ51425.1| transcriptional regulatory protein phoP [Shigella sonnei 53G] gi|323172493|gb|EFZ58130.1| transcriptional regulatory protein phoP [Escherichia coli LT-68] gi|323179334|gb|EFZ64904.1| transcriptional regulatory protein phoP [Escherichia coli 1180] gi|323185686|gb|EFZ71047.1| transcriptional regulatory protein phoP [Escherichia coli 1357] gi|323187618|gb|EFZ72925.1| transcriptional regulatory protein phoP [Escherichia coli RN587/1] gi|323379033|gb|ADX51301.1| two component transcriptional regulator, winged helix family [Escherichia coli KO11] gi|323947566|gb|EGB43570.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|323953183|gb|EGB49049.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323957956|gb|EGB53668.1| response regulator receiver domain-containing protein [Escherichia coli H263] gi|323962729|gb|EGB58307.1| response regulator receiver domain-containing protein [Escherichia coli H489] gi|323967069|gb|EGB62495.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|323973280|gb|EGB68469.1| response regulator receiver domain-containing protein [Escherichia coli TA007] gi|323976499|gb|EGB71587.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] gi|324005953|gb|EGB75172.1| response regulator receiver domain protein [Escherichia coli MS 57-2] gi|324013223|gb|EGB82442.1| response regulator receiver domain protein [Escherichia coli MS 60-1] gi|324017498|gb|EGB86717.1| response regulator receiver domain protein [Escherichia coli MS 117-3] gi|324117299|gb|EGC11206.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|327253834|gb|EGE65463.1| transcriptional regulatory protein phoP [Escherichia coli STEC_7v] gi|331045141|gb|EGI17268.1| transcriptional regulatory protein PhoP [Escherichia coli M605] gi|331050459|gb|EGI22517.1| transcriptional regulatory protein PhoP [Escherichia coli M718] gi|331055442|gb|EGI27451.1| transcriptional regulatory protein PhoP [Escherichia coli TA206] gi|331060963|gb|EGI32927.1| transcriptional regulatory protein PhoP [Escherichia coli TA143] gi|331065116|gb|EGI37011.1| transcriptional regulatory protein PhoP [Escherichia coli TA271] gi|331080267|gb|EGI51446.1| transcriptional regulatory protein PhoP [Escherichia coli H299] gi|332089268|gb|EGI94374.1| transcriptional regulatory protein phoP [Shigella boydii 5216-82] gi|332092880|gb|EGI97948.1| transcriptional regulatory protein phoP [Shigella dysenteriae 155-74] gi|332094417|gb|EGI99466.1| transcriptional regulatory protein phoP [Shigella boydii 3594-74] gi|332102034|gb|EGJ05380.1| DNA-binding response regulator in two-component system response regulatory system with PhoQ [Shigella sp. D9] gi|332758319|gb|EGJ88642.1| transcriptional regulatory protein phoP [Shigella flexneri 4343-70] gi|332767375|gb|EGJ97569.1| response regulator [Shigella flexneri 2930-71] gi|333004967|gb|EGK24487.1| transcriptional regulatory protein phoP [Shigella flexneri VA-6] gi|333005526|gb|EGK25044.1| transcriptional regulatory protein phoP [Shigella flexneri K-218] gi|333008362|gb|EGK27836.1| transcriptional regulatory protein phoP [Shigella flexneri K-272] gi|333019381|gb|EGK38664.1| transcriptional regulatory protein phoP [Shigella flexneri K-304] gi|333019849|gb|EGK39121.1| transcriptional regulatory protein phoP [Shigella flexneri K-227] Length = 223 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 105/218 (48%), Gaps = 5/218 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ + ++ + D++ ++ L E L Sbjct: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGL--PDEDGLS 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R++ +P++ ++ S Q ++ +G DD V KP H E++AR+ A+ RR Sbjct: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ + EV L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E E + ++ + +LRKK++ + + + + R GY Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 >gi|327398349|ref|YP_004339218.1| winged helix family two component transcriptional regulator [Hippea maritima DSM 10411] gi|327180978|gb|AEA33159.1| two component transcriptional regulator, winged helix family [Hippea maritima DSM 10411] Length = 222 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 96/188 (51%), Gaps = 7/188 (3%) Query: 37 WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 +L +++ D+ I+ L G G ++++ R A ++P++ +S S+ ++ G Sbjct: 38 YLAVNSKYDLLIIDRMLPGIDGLSIVKMLR--AADKRMPILILSALGSVDEKVEGLRIGA 95 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRER 154 DD + KP E+LAR+ + RR K S + + +++ + + L E Sbjct: 96 DDYLPKPYAFSELLARIEVLLRRNKESQAKFLQVADLKINLENYTVTRAAKKIELKPTEF 155 Query: 155 RILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 ++L YL+ +RG+ + +T + I+G FD + N+V+ HIS+LR K+ + + + Sbjct: 156 KLLVYLVRHRGQVITRTMLLENIWGYNFDP--QTNIVDVHISRLRSKIDRGFDKELIKTI 213 Query: 214 RFLGYSID 221 R +GY I+ Sbjct: 214 RGIGYKIE 221 >gi|325264454|ref|ZP_08131184.1| DNA-binding response regulator DltR [Clostridium sp. D5] gi|324030116|gb|EGB91401.1| DNA-binding response regulator DltR [Clostridium sp. D5] Length = 227 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 78/155 (50%), Gaps = 2/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126 R + P++ ++ ++ + D G DD + KP E+LAR+ A+ RR + + + Sbjct: 71 REGYRTPILLLTAKAEVEDRIQGLDLGADDYLPKPFAMGELLARIRAMLRRREEFTPDII 130 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G I + + G+ F L + E R++E L+ N+G ++ ++ ++G EA E Sbjct: 131 TCGNIYLNQKSYELSGNGQTFVLAKLEYRLMETLLLNQGMYLSSEELLVKVWGYETEA-E 189 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V +IS LRK+L + +KR +GY+++ Sbjct: 190 LGTVWVYISYLRKRLAALGANVEIKAKRNIGYTLE 224 >gi|152981350|ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp. Marseille] gi|151281427|gb|ABR89837.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 233 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 5/163 (3%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ + +RA +S++P++ ++ S++ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRG 119 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP+ GR + ++ L RE +LE L+ G+ V+K Q+ + Sbjct: 120 AGGGPTVIKHGPLSYDQVGRIAYINDQMLDLSARELGLLEVLLQRSGRLVSKEQLVDHLC 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E ++ +LRKK+ ++G + + R LGY ++ Sbjct: 180 E-WSEEVSNNAIEVYVHRLRKKI--EIGGLRIATVRGLGYCLE 219 >gi|299534686|ref|ZP_07048016.1| putative lantibiotic biosynthesis regulatory protein [Lysinibacillus fusiformis ZC1] gi|298729774|gb|EFI70319.1| putative lantibiotic biosynthesis regulatory protein [Lysinibacillus fusiformis ZC1] Length = 220 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 3/157 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKV 121 L R IR P++ ++ + + G DD + KP E+ ARV A I R + Sbjct: 62 LCRQIRHAVDCPILFLTAKTLEEDIMFGLGLGADDYLIKPFSIGELRARVNAHIRRENRE 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N G + G++ VQ E PL + E I E+L +RG+ +K QI+ I+G F Sbjct: 122 KRNVLYHGKVHFNLSGKELFVQNERIPLTKSEYEICEFLARHRGQVFSKEQIYETIFG-F 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D + + HI +R KL + + +D+ +GY Sbjct: 181 DGKSDSTAITEHIKNIRSKL-HAFDIEVIDTVWGIGY 216 >gi|255280222|ref|ZP_05344777.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM 14469] gi|255269313|gb|EET62518.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM 14469] Length = 225 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 9/145 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP+I ++ + L F+ GVD+ ++KP + ++ARV AI RR Sbjct: 65 QVCREIRGVSNVPIIMLTARADERDELLGFELGVDEYISKPFSPKILVARVEAILRR--- 121 Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 SN A G I + + G+ L +E +L Y M N+G +++ +I ++ Sbjct: 122 SNALAPDKIMTAGKISLDKAAHVVKADGQSVDLSYKEFELLSYFMENQGIALSREKILNS 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++ +D + +++H+ KLR KL Sbjct: 182 VWN-YDYFGDARTIDTHVKKLRSKL 205 >gi|118479956|ref|YP_897107.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118419181|gb|ABK87600.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 249 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 11/165 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 83 RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 142 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S E +++F + + E L ++E + E L++ + ++ + +A++ Sbjct: 143 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 202 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 DE+ VEEN + +I++LRKK N+LG + +++ R LGY + Sbjct: 203 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGYRFN 244 >gi|84494699|ref|ZP_00993818.1| TcrA [Janibacter sp. HTCC2649] gi|84384192|gb|EAQ00072.1| TcrA [Janibacter sp. HTCC2649] Length = 231 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/217 (24%), Positives = 100/217 (46%), Gaps = 18/217 (8%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66 R L +G++ DGV+ +WL + DV ++ L G+ G VL R Sbjct: 18 RGLTAEGFVVDVAHDGVT---------GQWLATENPYDVIVLDIMLPGRNGYDVLRNLRA 68 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-R 125 ++ + ++ D QT D F+ G DD + KP ++AR+ A+ RR + Sbjct: 69 LKVWAPAMMLTAKDGEYDQT--DAFELGADDYLTKPFSFVVLVARLRALVRRGAPARPVD 126 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 G + + + R G L +E +L++LM + ++K +I ++ D+A Sbjct: 127 LRVGGLLLDPNKRTVSRNGHAITLTAKEFSVLQFLMRHPEVVLSKAEILDNVW---DQAF 183 Query: 186 E--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +N+VE ++ LR+K+ G +++ R +GY + Sbjct: 184 DGSDNIVEVYVGYLRRKIDQAFGVTSLETVRGMGYRL 220 >gi|325265320|ref|ZP_08132045.1| DNA-binding response regulator [Clostridium sp. D5] gi|324029499|gb|EGB90789.1| DNA-binding response regulator [Clostridium sp. D5] Length = 234 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 2/138 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 ++ R S +P+I ++ S L ++ G DD + KP R +LA+ A+ RR Sbjct: 77 KMAREMSSLPIIMLTARSSEDDKLKGYEYGADDYMTKPFSPRVLLAKANALLRRSSSGKT 136 Query: 125 RA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G I + V G+ L +E +L + + N G+ ++ Q+ + I+G +D Sbjct: 137 DSLHAGKITLIPASHKVFVDGQEVTLTHKEYELLHFFLTNSGQIFSRDQLLNRIWG-YDF 195 Query: 184 AVEENVVESHISKLRKKL 201 A V++HI LR+KL Sbjct: 196 AGTTRTVDTHIKTLRQKL 213 >gi|296444337|ref|ZP_06886302.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296257984|gb|EFH05046.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 227 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 3/164 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ V LP I R + ++ ++ ++ ++ D+G DD V KP E++ARV A Sbjct: 57 GDAVSVLPAIRRLQPSIRIVMMTARNAVDDRIEGLDAGADDYVTKPFDANELVARVRACL 116 Query: 117 RRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RRL G I + RD V G +RER +L+ L+ N G+ V + ++ Sbjct: 117 RRLGGGEAPPPIAVGGIVFNPETRDVSVNGANVLFHKRERALLDILLLNAGRAVLRDRLL 176 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + IYG D+ V+ N + +S+LR++L + + + R +GY Sbjct: 177 AEIYGFADD-VQANALSMLVSRLRRRLLDLDAGVEIHTARDVGY 219 >gi|146311299|ref|YP_001176373.1| DNA-binding transcriptional regulator PhoP [Enterobacter sp. 638] gi|145318175|gb|ABP60322.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 224 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%) Query: 58 EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 E L L R R+H +P++ ++ Q ++ +G DD V KP H E+ AR+ A+ Sbjct: 58 EDGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARIQALM 117 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR +++ P +V R+ + EV L E I+E L+ N GK V+K + Sbjct: 118 RRNSGLASQVISLPPFQVDLSRREFSINDEVIKLTAFEYTIMETLIRNSGKVVSKDSLML 177 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y E E + ++ + +LRKK++ + D + + R GY Sbjct: 178 QLYP-DAELRESHTIDVLMGRLRKKIQAQHPHDVITTVRGQGY 219 >gi|159899318|ref|YP_001545565.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892357|gb|ABX05437.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 236 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 12/148 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +RA S VP+I ++ ++ + +SG DD + KP E+LAR+ A+ RR Sbjct: 67 FEVCRRLRAGSDVPIIMLTAKETVPDRVMGLESGADDYLIKPFAFEELLARIRALLRR-- 124 Query: 121 VSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R E GP+ + +G R+ + G L +E +LE M + G+ + + I Sbjct: 125 -HVARTE-GPVVLQVNGLEMNTASREVTIAGRAVQLTAKEYELLELFMRHPGQVLTRDVI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 + ++G +D E N++E ++ LR+KL Sbjct: 183 YDRVWG-YDFGGESNIIEVYVRYLRQKL 209 >gi|37958845|gb|AAP51109.1| putative two-component response regulator [uncultured bacterium] Length = 228 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 12/152 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----T 128 P++ ++ + + + D G DD V KP E+ AR+ A+ RR S RA Sbjct: 79 TPVLIMTARDQVASRIAGLDMGADDYVVKPFDSNELAARMRALQRR---SRGRAHPVLSC 135 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + V + R G V L RE +L L+ R + +++TQI +Y FD+A++ N Sbjct: 136 GELEVDTAARQVRRAGVVVELSVREYALLLALVEVRPRVLSRTQIEERLYS-FDQALDSN 194 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E H+ LR+KL N D + + R +GY I Sbjct: 195 AIEVHVHHLRRKLGN----DIIRTMRGVGYFI 222 >gi|322373103|ref|ZP_08047639.1| DNA-binding response regulator CiaR [Streptococcus sp. C150] gi|321278145|gb|EFX55214.1| DNA-binding response regulator CiaR [Streptococcus sp. C150] Length = 224 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K N G +RV V+ + L Sbjct: 91 FELGADDYLTKPFYLEELKMRIQALLKRSGKFDQNTLSFGDVRVNLSTNSTFVEDKEVEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + K+QIF ++G FD +VVE ++SK+RKKL+ Sbjct: 151 LGKEFDLLVYFLQNQNVILPKSQIFDRLWG-FDSDTTVSVVEVYVSKIRKKLKGTDFAAN 209 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 210 LQTLRSVGY 218 >gi|316941814|gb|ADU75848.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 223 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 6/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR SQVP+I IS + + G DD + KP ++A+V A+ RR + Sbjct: 67 IRKVSQVPIIFISSASDNMNIVMAINMGADDFIAKPFDLTVLVAKVQALLRRTYNFTSGT 126 Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + G I SD +G L + E RIL+ L+ RGK V++ + ++ D Sbjct: 127 DILEHKGVILNLSDCT-LVYKGNKLDLTKNEHRILQVLLEQRGKVVSRDTLMYRLWET-D 184 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V+EN + +I++LRKKL + + +K+ LGY ++ Sbjct: 185 DFVDENTLTVNIARLRKKLAGVGIEEFIITKKGLGYMVE 223 >gi|289644642|ref|ZP_06476707.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289505542|gb|EFD26576.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 229 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 16/208 (7%) Query: 23 GVSLEGF------NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPL 75 G++ EGF + LE W S DV ++ L G E+ R +RA + P+ Sbjct: 19 GLTEEGFAVDIVADGLE-AVWQASEIAYDVIVLDLML--PGLDGFEVCRRLRAAGRWAPV 75 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGPIR 132 + +S + + D G DD + KP E+ AR+ A+ RR ++ R + +R Sbjct: 76 LMLSARSEVTDRVRGLDVGADDYLAKPFSFDELFARIRALIRR--GTHERPVVLDVDGLR 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + GR G L +E +LEYLM + G+ +++T I ++ F NVV+ Sbjct: 134 LDPAGRTASRDGTALDLSPKEFALLEYLMRHPGEVLSRTAILEHVWD-FAYDGTSNVVDQ 192 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +I+ LR+K+ G +++ R GY + Sbjct: 193 YIAYLRRKIDRPFGISQLETVRGAGYRL 220 >gi|281180069|dbj|BAI56399.1| two-component response regulator [Escherichia coli SE15] Length = 219 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 L---REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + R + GE L +E +LE LM N G+ + + I +Y Sbjct: 120 NGQASNELLRGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|153940586|ref|YP_001390235.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936482|gb|ABS41980.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318329|gb|ADF98706.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 225 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 26/174 (14%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 EL +I+R +P+I ++ + D G DD + KP RE+++R+ ++ RR Sbjct: 61 ELCKIVREKEDIPIIFLTACDDEVNVVMGLDMGADDYIIKPFRIRELISRIKSVLRRYQK 120 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L++++ R T +V+ + ++ L E R+L L N+G+ +++ Sbjct: 121 GINSKIILELNDIRINTLDAKVYKNDKE-------IVLTALEYRLLLILANNQGQVLSRN 173 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220 Q+ I+ + + V +N + +I ++R+KL N DP + + R +GY + Sbjct: 174 QLLQGIWDVAGDFVNDNTLTVYIKRIREKLEN----DPQKPVIIKTVRGMGYKV 223 >gi|316936256|ref|YP_004111238.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315603970|gb|ADU46505.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 237 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 10/168 (5%) Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +RA Q+P+I ++ + +G DD + KP E+LARV + R Sbjct: 62 IELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121 Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + R T G + + D R G L E R+LE+ + + G+ ++ Q+ Sbjct: 122 R--AAPERLATVLAYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 180 LDGVWG-RDIYIDERTVDVHIGRLRKLLNIGREQDPIRTVRGAGYALD 226 >gi|258539435|ref|YP_003173934.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|257151111|emb|CAR90083.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] Length = 224 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 11/158 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE VL IR SQVP++ ++ T+ G +D + KP E+LAR+ Sbjct: 59 GESVLT---TIRKTSQVPVLVLTAIQEKAKTVALLQQGANDYLTKPFDIDELLARIQVQL 115 Query: 117 RRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R++ ++N++ + G I++ V + LP++E +L +M + + K+Q Sbjct: 116 RQVSGQPLMTNDQLKVGEIQLDPKRHVVTVNQQTLTLPKKEYDMLALMMRDPHQVFDKSQ 175 Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDP 209 ++ ++G F A +N + HIS LR K+ N+L DP Sbjct: 176 LYEHVWGEPFLNA--DNTLNVHISNLRTKI-NELAHDP 210 >gi|256395907|ref|YP_003117471.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362133|gb|ACU75630.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 230 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 13/158 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123 +R + VP++ +S Q + D+G DD V KP E+LAR+ A+ RR + +N Sbjct: 67 LRGWTTVPIVVLSGRTDPQEKIHALDAGADDFVTKPFAMEELLARLRAVIRRHQQANAGA 126 Query: 124 NRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 AET +R+ S D G+ L R E +LE L+ + G+ V+ +++ + ++ Sbjct: 127 TGAETSSVRLGSCDIDLVAHSVARGGDPVRLTRTEWALLEVLLRHPGQLVSTSRLLADVW 186 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 G E + H+++LR+KL + DP + + + Sbjct: 187 G-NSHTGEAGYLRFHMARLRRKLED----DPQNPRHLM 219 >gi|228899978|ref|ZP_04064216.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228859664|gb|EEN04086.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 218 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 58 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGGDDYIVKPFSPGELVARMEAVLRRYT 117 Query: 121 VSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GPI + R E GE L +E +L +L + G+ ++ Q+ ++ Sbjct: 118 KQEQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D A V++H+ +R KL Sbjct: 178 G-YDYAGSTRTVDTHVKTMRLKL 199 >gi|75910544|ref|YP_324840.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704269|gb|ABA23945.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 236 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 7/151 (4%) Query: 57 GEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ LE+ + +R ++ P++ ++ +L + D+G DD + KP RE+LARV A+ Sbjct: 62 GKTGLEICQELRRQGKITPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRAL 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAK 170 RR A G + V D E QG V L ++E ++L+Y M + G+ + Sbjct: 122 LRRSSSQTYEATPGRLTVADLELDCENQVAYRQGRVIELSQKESQLLQYFMEHTGQLLTH 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 QI ++ +E NV+ + I LR+K+ Sbjct: 182 AQILQHLWE-DNEPPNSNVIAALIRLLRRKI 211 >gi|89092214|ref|ZP_01165168.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanospirillum sp. MED92] gi|89083302|gb|EAR62520.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanospirillum sp. MED92] Length = 231 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 113/234 (48%), Gaps = 25/234 (10%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGKG 57 +++DD A +++ IA+ + + G+ LE E Q+ + D+ ++ + G Sbjct: 8 LIVDDEAPIRE-MIAV----ALEMAGYQCLEAENANQAHGLIVDDKPDMVLLDWMM--PG 60 Query: 58 EKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 +E R +R + +P+I ++ + ++GVDD + KP RE++AR+ A Sbjct: 61 ASGIEFARRLRKDETTADIPIIMLTAKGDEDNKIKGLEAGVDDYITKPFSPRELVARLKA 120 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDP---EVQGEVFP--LPRRERRILEYLMANRGKRVA 169 + RR + + P+ V DP V ++ P L E R+L++ M ++ + + Sbjct: 121 VLRR---TTPKGIEEPVTVDGLTLDPISHRVTSDLNPIELGPTEFRLLQFFMTHQDRAYS 177 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++Q+ ++G + VEE V+ HI +LRK L ++ + V + R GY N Sbjct: 178 RSQLLDMVWG-GNVYVEERTVDVHIRRLRKALGDRHDY-LVQTVRGTGYRFSSN 229 >gi|300813185|ref|ZP_07093559.1| response regulator ArlR [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495843|gb|EFK30991.1| response regulator ArlR [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 237 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 12/175 (6%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L + ED AI L+ LE+ R +R P+I ++ S+ + D G DD Sbjct: 38 LDRALSEDFDAILLDLMLPDLNGLEIARRVRQSKATPIIMMTARDSVIDRVSGLDHGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETG-PIRVFSDGRDPEVQ----------GEV 146 + KP E+LAR+ A+ RR+K+ + ++ P + +D ++ G+ Sbjct: 98 YIVKPFAIEELLARLRAVLRRVKIEKDASKDKLPRQKVVKFKDLTIETANRIVHRGDGKT 157 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L +RE +L L+ N+ V + Q+ + I+G + +E NVVE ++ LR K+ Sbjct: 158 VDLTKREYNLLMTLIENKNNVVGRDQLLNKIWG-PESNIETNVVEVYVRYLRNKI 211 >gi|256004111|ref|ZP_05429095.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|255991859|gb|EEU01957.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] Length = 213 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 6/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR SQVP+I IS + + G DD + KP ++A+V A+ RR + Sbjct: 57 IRKVSQVPIIFISSASDNMNIVMAINMGADDFIAKPFDLTVLVAKVQALLRRTYNFTSGT 116 Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + G I SD +G L + E RIL+ L+ RGK V++ + ++ D Sbjct: 117 DILEHKGVILNLSDCT-LVYKGNKLDLTKNEHRILQVLLEQRGKVVSRDTLMYRLWET-D 174 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V+EN + +I++LRKKL + + +K+ LGY ++ Sbjct: 175 DFVDENTLTVNIARLRKKLAGVGIEEFIITKKGLGYMVE 213 >gi|227876375|ref|ZP_03994487.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|306817267|ref|ZP_07451013.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|227842916|gb|EEJ53113.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|304649947|gb|EFM47226.1| response regulator [Mobiluncus mulieris ATCC 35239] Length = 241 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 9/143 (6%) Query: 65 RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +RA +P++ ++ ++ ++ +G DD V KP E++AR+ AI RR K + Sbjct: 73 RKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTK--H 130 Query: 124 NRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +E +RV D + G++ L E ++L YLM N G+ V+K+QI ++ Sbjct: 131 GSSEQPLLRVADLELDDNLYEVHRNGKLIDLSPTEFKLLRYLMVNEGRVVSKSQILDHVW 190 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 +D + +VES+IS LR+KL Sbjct: 191 E-YDWEGDAAIVESYISYLRRKL 212 >gi|163943146|ref|YP_001648030.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229020691|ref|ZP_04177419.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] gi|229026906|ref|ZP_04183230.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|163865343|gb|ABY46402.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228734409|gb|EEL85079.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|228740606|gb|EEL90876.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] Length = 235 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 20/217 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ + DG +E ++ + E + ++ G+ LE+ R IR Sbjct: 23 LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 71 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122 S++P+I ++ S + + G DD V KP RE+LARV A RR K Sbjct: 72 SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 131 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N GPI + S+ + E L RE +L YL + G+ + + + ++G +D Sbjct: 132 NTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 190 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 + V+ + +LR+K+ + + ++R +GY Sbjct: 191 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGY 227 >gi|242372530|ref|ZP_04818104.1| KDP operon transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242349747|gb|EES41348.1| KDP operon transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 232 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA---IYR 117 L L + +R P+I IS +T + D G +D + KP + E+ AR+ + R Sbjct: 62 LSLIQQLRECVDTPIIVISARTEEETIVKALDCGANDYMTKPFNIDELQARIRVALRVSR 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ N E GP+ + +G+ + G+ L E ++LE L + GK + + ++ Sbjct: 122 KIDTEQNNFENGPLTIDFNGKSVYIMGQSIHLTPNEFQLLEILSRHVGKVLTYQILLKSL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +G ++ E + H++ LRKKL D +D K + + Sbjct: 182 FGYVNKC-EMASLRVHMASLRKKLNYSENIDGMDKKLIITH 221 >gi|241896109|ref|ZP_04783405.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241870623|gb|EER74374.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 229 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 8/148 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R P+I ++ S+ + D G DD V KP E+LARV A+ RR+ Sbjct: 61 LEVARRLREEKNTPIIMMTARDSVIDRVSGLDYGADDYVVKPFAIEELLARVRALLRRID 120 Query: 121 VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + T + V + R E+ L +RE +L LM N ++ ++ Sbjct: 121 IETEEHSTHQSVVRYRDLTVEKENRIARRGNEIINLTKREYELLLILMENINVVQSREEL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G +D +E NVV+ +I LR K+ Sbjct: 181 LKKVWG-YDSEIETNVVDVYIRYLRNKI 207 >gi|229014632|ref|ZP_04171746.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] gi|229136291|ref|ZP_04265038.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|229170168|ref|ZP_04297855.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|228613313|gb|EEK70451.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|228647163|gb|EEL03251.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|228746643|gb|EEL96532.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] Length = 234 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 20/217 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ + DG +E ++ + E + ++ G+ LE+ R IR Sbjct: 22 LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122 S++P+I ++ S + + G DD V KP RE+LARV A RR K Sbjct: 71 SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 130 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N GPI + S+ + E L RE +L YL + G+ + + + ++G +D Sbjct: 131 NTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 189 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 + V+ + +LR+K+ + + ++R +GY Sbjct: 190 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGY 226 >gi|169826346|ref|YP_001696504.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41] gi|168990834|gb|ACA38374.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41] Length = 233 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 12/227 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 + VL D+RA+ + I L + S+ N++E + + D ++ L G G Sbjct: 6 ILVLEDERAIAEMIDIILRKEGMTSITLCNTIEAAKSEIYAKTFDFYLLDIMLPDGSG-- 63 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAI 115 LE+ +IR S P+ ++ S L F +G DD + KP + E++ARV A Sbjct: 64 -LEVANLIREKSDAPIFYLTAKSSDADKLRGFMNGADDYITKPFNPLELVARVKVQLARY 122 Query: 116 YRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ +V+ N T F D + V G + R +L+YL N G+ ++K QI+ Sbjct: 123 MKKKQVTENHLFTCSRFTFDIDAAEITVDGVREIISGRLFHLLKYLCDNAGQVLSKEQIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 ++G D ++N V HI KLR+K+ G + + R +GY + Sbjct: 183 ERVWG--DCLFDDNTVMVHIRKLREKIEKNPGKPTCIITVRGIGYKL 227 >gi|158334884|ref|YP_001516056.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158305125|gb|ABW26742.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 241 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 79/156 (50%), Gaps = 16/156 (10%) Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ + +R+ SQ+ P++ ++ +L + D+G DD + KP RE+LARV A+ RR Sbjct: 66 IEVCQELRSQSQLTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRR- 124 Query: 120 KVSNNRAETGPIRVFS-----------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 S ++T P +F + + QG+ L +E ++L YLM + + + Sbjct: 125 --SEQFSQTSPEALFQRIQMEGLELDLESQIAYCQGQAITLSEKESQLLTYLMQHPHQLL 182 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 QI+ ++ D+ NV+ + I LR+K+ K Sbjct: 183 THDQIYQHLWPSGDQP-SSNVLAAQIRLLRRKIAAK 217 >gi|152971957|ref|YP_001337066.1| DNA-binding transcriptional regulator QseB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956806|gb|ABR78836.1| putative 2-component transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 219 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 +L++D L+ DG A G S++ F + LE + L S A D + ++ L G G Sbjct: 3 ILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYS-APYDAAILDLTLPGIDGLD 61 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L R H V ++ D +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 62 ILREWRDKGRHEPVLILTARD--ALNQRVEGLRLGADDYLCKPFALIEVAARLEALIRRA 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S++ G + + + + GE L +E +LE LM N G+ + + I +Y Sbjct: 120 HGQSSSELRHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D+ V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDDEVSSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|56695110|ref|YP_165457.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3] gi|56676847|gb|AAV93513.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3] Length = 221 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 105/226 (46%), Gaps = 17/226 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 F+L++D + + DG ++ ++ E + D+ ++ L G G Sbjct: 3 FLLVEDNQSLASAILDRLRLDGHVVDHAANISLAEEFVITTDYDLILLDIMLPDGDGRSF 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 L++ R R S+ P+I ++ + + D G DD + KP E+ AR A+ RR Sbjct: 63 LKMQRDHR--SETPVIVLTARSEVSDRVGVLDLGADDYLTKPFDFSELEARCRAVLRRRG 120 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+N+ G + DP EV G PL +E R+LE +A + +K ++ Sbjct: 121 GRSSNQKRIGGLTF-----DPLSGLLEVCGLEVPLRNKELRLLEIFLAAPDQIFSKARLV 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DE V EN +E ++ +LRKK+ G + + + R LGY I Sbjct: 176 DRLFS-YDEEVSENAIEVYVGRLRKKIAGS-GVE-IQTVRGLGYRI 218 >gi|237752748|ref|ZP_04583228.1| phosphate regulon response regulator PhoB [Helicobacter winghamensis ATCC BAA-430] gi|229376237|gb|EEO26328.1| phosphate regulon response regulator PhoB [Helicobacter winghamensis ATCC BAA-430] Length = 221 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 105/221 (47%), Gaps = 6/221 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEK 59 +FVL DD +++ AL + +GF +E F+E L+++ + + G Sbjct: 2 VFVLEDDTNILELVLYAL-KSQHIQSQGFLEVETFKEALKTTTPQALVLDVMLPNASGFD 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L+ + A +P++ ++ + + D G DD + KP E LARV AI RR Sbjct: 61 ILKNIKTNPATQGIPVLMLTALNNEFDKVKGLDLGADDYITKPFSVMEFLARVRAILRRN 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K S+ G + R +V GE L +E +L +L+ N+ + ++ ++ ++G Sbjct: 121 KESDTIC-YGILEFSYTTRSVKVCGEPIMLTLKEFELLGFLLKNQNRAFSRDELLEILWG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + E ++ HI LRKKL + + + + R +GY I Sbjct: 180 -YSYSGESRTIDIHIKTLRKKLGSASKY--IQTIRGIGYKI 217 >gi|197336815|ref|YP_002157801.1| transcriptional regulator [Vibrio fischeri MJ11] gi|197314067|gb|ACH63516.1| transcriptional regulator [Vibrio fischeri MJ11] Length = 228 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 3/131 (2%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 SG DD + KP E+ AR+ + RR +K S++ G ++ + E + L Sbjct: 93 SGADDYLVKPFSFDELHARILTVGRRGQVKNSDDDISIGLFKLDLAKKTLEFDTKFIDLT 152 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 + E +I+E L ++ + + I + G FD ++ +N +ESH+S +RKK++ G PV Sbjct: 153 KNEYKIIECLFLSKNQVMTTENISDYVVGSFD-SLSKNTIESHLSSVRKKVKALGGELPV 211 Query: 211 DSKRFLGYSID 221 +KR GY ++ Sbjct: 212 KNKRGFGYYVE 222 >gi|191639614|ref|YP_001988780.1| Response regulator [Lactobacillus casei BL23] gi|190713916|emb|CAQ67922.1| Response regulator [Lactobacillus casei BL23] gi|327383726|gb|AEA55202.1| Two component transcriptional regulator, winged helix family [Lactobacillus casei LC2W] gi|327386919|gb|AEA58393.1| Two component transcriptional regulator, winged helix family [Lactobacillus casei BD-II] Length = 233 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 17/169 (10%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR SQVP+I ++ + + G DD + KP E++ARV R +N Sbjct: 68 RKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALR-----HN 122 Query: 125 RAETGPIRVFS------DGRDPEVQ-GEV-FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R P +F D + VQ GEV PL +RE +L L+A++ + ++ + +A Sbjct: 123 RQAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLAA 182 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223 ++G FD + N+++ +I LR K+ + G + + R +GY + N Sbjct: 183 VWGTDFDG--QPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229 >gi|152989182|ref|YP_001345963.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa PA7] gi|150964340|gb|ABR86365.1| two-component response regulator CreB [Pseudomonas aeruginosa PA7] Length = 229 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---- 122 +R S+VP+I ++ + + + G DD V KP RE+ ARV AI +R+ Sbjct: 67 LRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAPRPAPL 126 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 A GP +V ++ G L R E R+L+ L+ + ++ Q+ A+ G+ Sbjct: 127 EEAALHGPFQVDAERVRIHYHGAPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL-GVAS 185 Query: 183 EAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYS 219 EA E ++SHI LR KLR N G + + + R LGYS Sbjct: 186 EAGYERNIDSHIKSLRAKLRQVNARG-EAIQTHRGLGYS 223 >gi|148256853|ref|YP_001241438.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146409026|gb|ABQ37532.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 221 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 16/164 (9%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R A +P++ ++ S +D D+G DD + KP + E+LAR+ AI RR Sbjct: 63 LKRWRTAGRHMPVLILTARASWAERVDGIDAGADDYLPKPFRNEELLARLRAIVRR---- 118 Query: 123 NNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + P+ D E Q +V PL + E R++ YL+ G+ V + ++ Sbjct: 119 -SAGHAAPVLSSGDLMLDERQMKVSLAGVPVPLSQLEYRLIAYLLRQSGRVVPQHELEEN 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YGL + + N +E I ++RK KLG + ++++R GY I Sbjct: 178 VYGLGHDH-DSNALEVLIRRVRK----KLGAEIIETRRGFGYMI 216 >gi|193071717|ref|ZP_03052617.1| DNA-binding response regulator PhoP [Escherichia coli E110019] gi|192954979|gb|EDV85482.1| DNA-binding response regulator PhoP [Escherichia coli E110019] Length = 223 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P++ ++ S Q ++ +G DD V KP H E++AR+ A+ RR +++ P Sbjct: 73 LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 +V R+ + EV L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 133 QVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +LRKK++ + + + + R GY Sbjct: 192 VLMGRLRKKIQAQYPQEVITTVRGQGY 218 >gi|115352153|ref|YP_773992.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115282141|gb|ABI87658.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 224 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 10/186 (5%) Query: 41 SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 SA D ++ L G G +L R + + P++ +S + + +G DD + Sbjct: 42 SASYDAITLDRMLPGADGLAILTAMRTVGIDT--PVLMLSALGDVDERIRGLRAGGDDYL 99 Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERR 155 KP E+ AR+ + RR + S +T GP+ + R + PL E R Sbjct: 100 TKPFDSGELSARIEVLLRRRQASGVPQQTLLTVGPLELDLISRCARRGVDEIPLLPTEFR 159 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214 +LE++M N G+ + +T +F A++G FD N+++ H+ +LRKK+ + + R Sbjct: 160 VLEFMMRNAGQTITRTMLFEAVWGYHFDPGT--NLIDVHMGRLRKKIDPPGAVPMIQTVR 217 Query: 215 FLGYSI 220 GY + Sbjct: 218 GSGYML 223 >gi|219853840|ref|YP_002470962.1| hypothetical protein CKR_0497 [Clostridium kluyveri NBRC 12016] gi|219567564|dbj|BAH05548.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 230 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 4/161 (2%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E + +R ++ +P++ ++ + + F+ G+DD + KPI E+L R+ A+ RR Sbjct: 68 EFAKTVRKQNKNIPILFMTARDDISSKKKGFNIGIDDYMVKPIELDELLMRIEALLRRAN 127 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ R G + + +D + GE PL RE IL L++ + +TQ+ +G Sbjct: 128 IASERKLAVGSLTLNADENMAYLNGEEVPLTVREFEILFKLLSYPKRTFTRTQLMDEFWG 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E+ V+ I+KLR KL + V + R LGY + Sbjct: 188 IESESTPR-TVDVSITKLRSKLAECKDIEIV-TVRSLGYKV 226 >gi|281355652|ref|ZP_06242146.1| two component transcriptional regulator, winged helix family [Victivallis vadensis ATCC BAA-548] gi|281318532|gb|EFB02552.1| two component transcriptional regulator, winged helix family [Victivallis vadensis ATCC BAA-548] Length = 222 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 28/227 (12%) Query: 16 IALFGDDG----VSLEGFNSLEFEEWLQS----------SAREDVSAIEAFLIG-KGEKV 60 I L DD + L+GF FE + SA D + I+ L G V Sbjct: 3 ILLIEDDAKTAEIILKGFQQAGFETCHAADGLDGLFKAKSALFDAAVIDVMLPKLNGFTV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E R A ++P+I +S S+++ + + G DD + KP E++ARV A RR Sbjct: 63 IEELRA--AGLKLPIIVLSAKDSVESKITGLEKGGDDYLAKPFSMAELIARVHAQLRR-- 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ AET + V D + GE L E ++LEYLM N+G+ V+K I Sbjct: 119 -ASCAAETTVLTVEDLTLDLISRKVVRGGERIELQPLEYQLLEYLMRNKGRVVSKNTIME 177 Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ FD N+VES + +LR+K+ + + R GY ++ Sbjct: 178 HVWEYHFD--TRTNIVESRVCRLREKIDKPFARKLIRTVRGFGYVLE 222 >gi|39937833|ref|NP_950109.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|192293618|ref|YP_001994223.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|39651693|emb|CAE30215.1| two-component phosphate transcriptional regulator PhoB [Rhodopseudomonas palustris CGA009] gi|192287367|gb|ACF03748.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] Length = 237 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 10/168 (5%) Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +RA Q+P+I ++ + +G DD + KP E+LARV + R Sbjct: 62 IELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121 Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + R T G + + D R G L E R+LE+ + + G+ ++ Q+ Sbjct: 122 R--AAPERLATVLAYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 180 LDGVWG-RDIYIDERTVDVHIGRLRKLLNIGREQDPIRTVRGAGYALD 226 >gi|319950703|ref|ZP_08024601.1| response regulator receiver [Dietzia cinnamea P4] gi|319435619|gb|EFV90841.1| response regulator receiver [Dietzia cinnamea P4] Length = 217 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 10/150 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 +E+ R +R HS ++ ++ TL G DD + KP RE+ AR+ A+ RR Sbjct: 45 IEVCRQVRTHSDAYIVMLTARTEEVDTLIGLSVGADDYMTKPFSPRELSARIQAMMRRPR 104 Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 K ++ G + + + GR+ V G L R E IL L + G V + Sbjct: 105 QATTGGGGKTPSHVHSIGQLTINTAGREVTVGGSAIGLTRTEFDILATLARDPGIVVTRA 164 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q+ +A++G + ++++V+ HI LR+KL Sbjct: 165 QLMAAVWG-PNWVGDDHLVDVHIGHLRRKL 193 >gi|257883757|ref|ZP_05663410.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257886516|ref|ZP_05666169.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257892721|ref|ZP_05672374.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257895106|ref|ZP_05674759.1| transcriptional regulator [Enterococcus faecium Com12] gi|257897715|ref|ZP_05677368.1| transcriptional regulator [Enterococcus faecium Com15] gi|261208092|ref|ZP_05922767.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289565479|ref|ZP_06445927.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium D344SRF] gi|293377908|ref|ZP_06624089.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|293552967|ref|ZP_06673618.1| DNA-binding response regulator [Enterococcus faecium E1039] gi|293571287|ref|ZP_06682321.1| DNA-binding response regulator [Enterococcus faecium E980] gi|294615766|ref|ZP_06695615.1| DNA-binding response regulator [Enterococcus faecium E1636] gi|294619502|ref|ZP_06698943.1| DNA-binding response regulator [Enterococcus faecium E1679] gi|257819595|gb|EEV46743.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257822570|gb|EEV49502.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257829100|gb|EEV55707.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257831671|gb|EEV58092.1| transcriptional regulator [Enterococcus faecium Com12] gi|257835627|gb|EEV60701.1| transcriptional regulator [Enterococcus faecium Com15] gi|260077676|gb|EEW65392.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289162677|gb|EFD10529.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium D344SRF] gi|291591379|gb|EFF23039.1| DNA-binding response regulator [Enterococcus faecium E1636] gi|291594264|gb|EFF25697.1| DNA-binding response regulator [Enterococcus faecium E1679] gi|291602865|gb|EFF33066.1| DNA-binding response regulator [Enterococcus faecium E1039] gi|291608694|gb|EFF37982.1| DNA-binding response regulator [Enterococcus faecium E980] gi|292643455|gb|EFF61584.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] Length = 224 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 75/140 (53%), Gaps = 7/140 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVS 122 IR S+VP+I IS + + + G DD V KP ++A++ A+ RR ++S Sbjct: 67 IREVSKVPIIFISSRNTNMDMIMAMNMGADDFVTKPFQIDVLIAKINALLRRSYNYTELS 126 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + I + D E+ GE+ L + E R+L LM + GK +++ ++ A++ D Sbjct: 127 SEMMSHNGITLNVDNGSMEINGEIIDLSKNEYRLLFILMKHNGKILSREKLLRALWD--D 184 Query: 183 EA-VEENVVESHISKLRKKL 201 E V++N + +I++LR+K+ Sbjct: 185 ERFVDDNTLTVNINRLRRKI 204 >gi|297202942|ref|ZP_06920339.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197711934|gb|EDY55968.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 249 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 6/140 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR+ S VPLI ++ + + + +G DD + KP RE++AR+ A+ RR + + Sbjct: 94 RSIRSLSDVPLIAVTGWGTELDRVLGLQAGADDYLVKPYGFRELVARMDAVMRRSRPQVH 153 Query: 125 RAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + GP+R+ + R+ + G V + R+E +L L + V++ +I ++G Sbjct: 154 TEQVVLRGPLRIDAASREVSLHGRVVEVTRKEFDLLYLLACHPETVVSRKRIMQQVWG-- 211 Query: 182 DEAVEENVVESHISKLRKKL 201 + V++H+S LR KL Sbjct: 212 -GSWSRRTVDTHVSSLRGKL 230 >gi|89895181|ref|YP_518668.1| hypothetical protein DSY2435 [Desulfitobacterium hafniense Y51] gi|219669611|ref|YP_002460046.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89334629|dbj|BAE84224.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539871|gb|ACL21610.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 226 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 3/141 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R +R HS VP++ ++ + L + G DD + KP E+ A+ ++ RR K Sbjct: 66 ICRELRRHSDVPIMFLTARQAEGDRLHGYGLGCDDYMIKPFSLAELYAKANSLVRRAKGM 125 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V ++ G I + V G V L +E +L+ LM N GK V + + + I+G Sbjct: 126 VRDDLMSVGGISLDPYRGTVSVDGRVVELAPKEYALLKLLMENAGKIVTRETLLARIWG- 184 Query: 181 FDEAVEENVVESHISKLRKKL 201 +D + + VV++HI KLR+ L Sbjct: 185 YDFSGNDRVVDNHIKKLRQTL 205 >gi|258538863|ref|YP_003173362.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|257150539|emb|CAR89511.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] Length = 231 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L + +RA + P++ ++ +L + F+ G DD + KP H E++ R+ A+ +R Sbjct: 63 FDLLKQLRAKQVKTPVLILTAKDALTDKVRGFELGGDDYLTKPFHREELIMRLKALLKRT 122 Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + GP V + + + + L +E +L YL+ N+ + K QIF + Sbjct: 123 GHFFDEDGLTAGPFEVHLNRHEVLIHDKPVALNGKEFDLLVYLLQNQKTIITKDQIFDRL 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +G FD +VVE ++S LRKKL+ + + R +GY Sbjct: 183 WG-FDSDTAVSVVEVYMSNLRKKLKPMQADVWIKTIRNVGY 222 >gi|269120503|ref|YP_003308680.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] gi|268614381|gb|ACZ08749.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] Length = 219 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 1/137 (0%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S VP++ ++ ++ L ++ G DD + KP +LA++ I R+ V+ + Sbjct: 65 REIRKTSNVPVVILTALSDDESQLLAYEIGADDFIIKPFKKDILLAKIRRISERISVNQH 124 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + G + + D V +E IL YL+ N+G ++ I I+G +D Sbjct: 125 SYKFGGLEIDKDSYRILVDSREVKFAPKEFEILLYLIENKGVIKSRDDILIHIWG-YDSE 183 Query: 185 VEENVVESHISKLRKKL 201 V + VV++HI K+RKKL Sbjct: 184 VFDRVVDNHIKKIRKKL 200 >gi|218288804|ref|ZP_03493067.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|258512312|ref|YP_003185746.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218241162|gb|EED08338.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|257479038|gb|ACV59357.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 226 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/221 (20%), Positives = 106/221 (47%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A ++ + LF G +++ +++ S D ++ +++ G+ + Sbjct: 3 LLVVEDEATLRRELVQLFQQRGYTVDAVDTVFAAVEHGMSGAYDCIVLD-YMLPDGDGIE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L ++ A P++ ++ + + + G DD + KP H E+LARV A+ RR Sbjct: 62 ALTQLREAGCTTPILMLTVKNDPKDRVLGLNKGADDYLGKPFHPDELLARVGALVRRSPA 121 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E G ++ + R E G L +E ++E L ++ + + + Q+ + ++G Sbjct: 122 LTDDEVLEHGRAKLHTRSRSLEYDGRTLELTSKEFALMEALFRHKHQVMTRDQLIAKVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V ++ ++++I LR+K N + + + R GY++ Sbjct: 182 P-DAEVADSALDTYIYFLRRKCSNIGWKNAIVTVRGRGYAL 221 >gi|15801327|ref|NP_287344.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O157:H7 EDL933] gi|15830856|ref|NP_309629.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O157:H7 str. Sakai] gi|168749733|ref|ZP_02774755.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4113] gi|168756469|ref|ZP_02781476.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4401] gi|168762547|ref|ZP_02787554.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4501] gi|168770998|ref|ZP_02796005.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4486] gi|168776057|ref|ZP_02801064.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4196] gi|168782467|ref|ZP_02807474.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4076] gi|168787605|ref|ZP_02812612.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC869] gi|168800458|ref|ZP_02825465.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC508] gi|195938762|ref|ZP_03084144.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O157:H7 str. EC4024] gi|208807257|ref|ZP_03249594.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4206] gi|208816336|ref|ZP_03257515.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4045] gi|208822245|ref|ZP_03262564.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4042] gi|209395806|ref|YP_002270047.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4115] gi|217328143|ref|ZP_03444225.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. TW14588] gi|254792590|ref|YP_003077427.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O157:H7 str. TW14359] gi|261227231|ref|ZP_05941512.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli O157:H7 str. FRIK2000] gi|261258762|ref|ZP_05951295.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli O157:H7 str. FRIK966] gi|291282165|ref|YP_003498983.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli O55:H7 str. CB9615] gi|81764773|sp|Q8X738|PHOP_ECO57 RecName: Full=Transcriptional regulatory protein phoP gi|12514781|gb|AAG55956.1|AE005328_14 transcriptional regulatory protein [Escherichia coli O157:H7 str. EDL933] gi|13361066|dbj|BAB35025.1| transcriptional regulatory protein [Escherichia coli O157:H7 str. Sakai] gi|187768498|gb|EDU32342.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4196] gi|188015943|gb|EDU54065.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4113] gi|188999973|gb|EDU68959.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4076] gi|189356343|gb|EDU74762.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4401] gi|189360170|gb|EDU78589.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4486] gi|189367118|gb|EDU85534.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4501] gi|189372453|gb|EDU90869.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC869] gi|189377228|gb|EDU95644.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC508] gi|208727058|gb|EDZ76659.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4206] gi|208732984|gb|EDZ81672.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4045] gi|208737730|gb|EDZ85413.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4042] gi|209157206|gb|ACI34639.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. EC4115] gi|209772868|gb|ACI84746.1| transcriptional regulatory protein [Escherichia coli] gi|209772870|gb|ACI84747.1| transcriptional regulatory protein [Escherichia coli] gi|209772872|gb|ACI84748.1| transcriptional regulatory protein [Escherichia coli] gi|209772874|gb|ACI84749.1| transcriptional regulatory protein [Escherichia coli] gi|209772876|gb|ACI84750.1| transcriptional regulatory protein [Escherichia coli] gi|217318570|gb|EEC26996.1| DNA-binding response regulator PhoP [Escherichia coli O157:H7 str. TW14588] gi|254591990|gb|ACT71351.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli O157:H7 str. TW14359] gi|290762038|gb|ADD55999.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli O55:H7 str. CB9615] gi|320187857|gb|EFW62527.1| Transcriptional regulatory protein PhoP [Escherichia coli O157:H7 str. EC1212] gi|320637598|gb|EFX07398.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O157:H7 str. G5101] gi|320643158|gb|EFX12359.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O157:H- str. 493-89] gi|320648095|gb|EFX16771.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O157:H- str. H 2687] gi|320653928|gb|EFX22002.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659408|gb|EFX26977.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O55:H7 str. USDA 5905] gi|320664545|gb|EFX31696.1| DNA-binding transcriptional regulator PhoP [Escherichia coli O157:H7 str. LSU-61] gi|326339409|gb|EGD63221.1| Transcriptional regulatory protein PhoP [Escherichia coli O157:H7 str. 1044] gi|326341468|gb|EGD65259.1| Transcriptional regulatory protein PhoP [Escherichia coli O157:H7 str. 1125] Length = 223 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P++ ++ S Q ++ +G DD V KP H E++AR+ A+ RR +++ P Sbjct: 73 LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 +V R+ + EV L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 133 QVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +LRKK++ + + + + R GY Sbjct: 192 VLMGRLRKKIQAQYPQEVITTVRGQGY 218 >gi|317489141|ref|ZP_07947665.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325833786|ref|ZP_08166162.1| response regulator MprA [Eggerthella sp. HGA1] gi|316911761|gb|EFV33346.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325485228|gb|EGC87699.1| response regulator MprA [Eggerthella sp. HGA1] Length = 228 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 4/161 (2%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LEL R +R A P++ ++ +T F +GVDD + KP +E++ RV A+ RR Sbjct: 61 LELVRQLREAGWDTPILMLTARQDAETLHGGFIAGVDDYLTKPADMKELVLRVRALLRRS 120 Query: 120 KVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + NR G + ++ E GE LP +E ++L L++ G+ + Q+ ++ Sbjct: 121 GAAEANRLVIGAAVLDANRNTIERGGEKVELPSKEFQLLFRLLSTPGRAYTRMQLLDEVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G +D E V H+++LR + + F + + R +GY Sbjct: 181 G-WDTESSEATVNVHVNRLRSRFEDWPDF-AIKTVRGIGYC 219 >gi|296273138|ref|YP_003655769.1| winged helix family two component transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296097312|gb|ADG93262.1| two component transcriptional regulator, winged helix family [Arcobacter nitrofigilis DSM 7299] Length = 219 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 5/151 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AE 127 + +P++ IS L + DSG DD + KP E++ARV A+ RR K ++ + Sbjct: 69 SQKDIPILIISARDKLDQRILGLDSGADDYLCKPFDLDEVIARVQALLRRSKNQLSKLIK 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 + S + V L +RE I E+++ N V+K I I FD+ Sbjct: 129 YKDLEYNSLSKTVTKDDVVIELSKREINIFEHMLLNLNNVVSKENIVDHITS-FDDEFNP 187 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VE+++S+LRKKL + + V R LGY Sbjct: 188 TAVETYVSRLRKKLGDSINLKTV---RGLGY 215 >gi|294630229|ref|ZP_06708789.1| DNA-binding response regulator TrcR [Streptomyces sp. e14] gi|292833562|gb|EFF91911.1| DNA-binding response regulator TrcR [Streptomyces sp. e14] Length = 269 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 20/207 (9%) Query: 31 SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78 +L +E W SA + A++ ++ + + L R+ R VP++ + Sbjct: 61 ALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMMLPDMDGLTVLGRLRRELPDVPVLFL 120 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134 + +++ + +G DD V KP E++AR+ + RR ++ R+E+ G + + Sbjct: 121 TAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRAGAADRRSESVLVVGDLTLD 180 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D + G+ L E +L +LM N + ++K QI ++ +D + NVVE +I Sbjct: 181 EDSHEVSRGGQDIHLTATEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 239 Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220 S LR+K+ G +P + ++R GY I Sbjct: 240 SYLRRKI--DAGREPMIHTRRGAGYLI 264 >gi|293375621|ref|ZP_06621895.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325845388|ref|ZP_08168685.1| response regulator protein GraR [Turicibacter sp. HGF1] gi|292645838|gb|EFF63874.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325488575|gb|EGC90987.1| response regulator protein GraR [Turicibacter sp. HGF1] Length = 223 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 84/159 (52%), Gaps = 6/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 +R SQ+P+I IS + + G DD ++KP ++A++ A+ RR + Sbjct: 67 MRKLSQIPIIFISSMSDNMNIVMAMNMGGDDFISKPFDLTVMVAKIQALLRRSYSFSGTL 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N E + + + E Q L + E +IL+ L+ N+ K V++ +I ++ L D Sbjct: 127 NVIEHQGVILNLNDATVEYQQTKIELTKNEFKILQLLLENKSKIVSREEIMECLW-LSDS 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 +++N + ++++LRK+L N +G + + +K+ +GY ++ Sbjct: 186 FIDDNTLTVNVTRLRKRL-NDIGLENFIKTKKGIGYMVE 223 >gi|253579765|ref|ZP_04857033.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848764|gb|EES76726.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 222 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 8/224 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGK-GE 58 M ++D +++ I G GF N E + L+ E + ++ L G G Sbjct: 1 MIYCVEDERNIRELLIYTLETTGFKARGFGNGNELMKALKEEIPELI-LLDIMLPGDDGY 59 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +LE + + + VP+I ++ + + + G DD + KP E +ARV A+ RR Sbjct: 60 TILEQLKSMPSVKDVPVIMVTAKEAEFDKVKGLEGGADDYITKPFGMMEFVARVKAVLRR 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N E ++ + EV + E L R+E +L+YL+ N+G + + QI Sbjct: 120 SARQNEDKELHYDELYLNVGRHEVRYREEKVDLTRKEFELLQYLLENKGLVMTRNQILCH 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D E V+ H+ LR+KL + +++ R +GY I Sbjct: 180 VWG-YDFDGETRTVDVHVRTLRQKLGE--AGNLIETVRGVGYRI 220 >gi|238896533|ref|YP_002921273.1| DNA-binding transcriptional regulator QseB [Klebsiella pneumoniae NTUH-K2044] gi|330008924|ref|ZP_08306330.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3] gi|238548855|dbj|BAH65206.1| putative 2-component transcriptional regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328535024|gb|EGF61548.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3] Length = 219 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 +L++D L+ DG A G S++ F + LE + L S A D + ++ L G G Sbjct: 3 ILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYS-APYDAAILDLTLPGIDGLD 61 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L R H V ++ D +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 62 ILREWRDKGRHEPVLILTARD--ALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRA 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S++ G + + + + GE L +E +LE LM N G+ + + I +Y Sbjct: 120 HGQSSSELRHGKVILDPNRLTASLDGESLALKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D+ V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDDEVSSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|284029920|ref|YP_003379851.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809213|gb|ADB31052.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 244 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 2/109 (1%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRR 152 G DD V KP E++AR+ AI RR + T GP+ + + G +G+ + Sbjct: 114 GADDYVTKPFDLEELIARIRAILRRTAGHHTDVLTVGPLTLDAQGHQVTREGQPVKVSPT 173 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E R+L YLM N G+ V+K QI ++ +D + ++V+++IS LR+K+ Sbjct: 174 EFRLLRYLMENAGRVVSKAQILDRVWQ-YDFGGDMSIVDTYISYLRRKV 221 >gi|148977229|ref|ZP_01813856.1| transcriptional regulator CpxR [Vibrionales bacterium SWAT-3] gi|145963511|gb|EDK28774.1| transcriptional regulator CpxR [Vibrionales bacterium SWAT-3] Length = 229 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 15/151 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E + +R H + P++ ++ + + G DD + KP RE+LAR+ AI RR + Sbjct: 60 METLKKLREHWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQ 119 Query: 121 VSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +N +R + I VF ++ GE+ L E +L +L+ N G+ + K + Sbjct: 120 TTNTPKAASDRVQYQDIEVFPGKQEAYCNGEIIDLTTTEFALLSHLIQNPGQVITKEALS 179 Query: 175 SAIYG----LFDEAVEENVVESHISKLRKKL 201 + G FD A ++ HIS LRKK+ Sbjct: 180 LDVLGKRLAAFDRA-----IDMHISNLRKKI 205 >gi|113972144|ref|YP_735937.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|113886828|gb|ABI40880.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] Length = 227 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 8/151 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TG 129 P++ ++ S Q ++ D+G DD + KP H E++AR+ A+ RR S +A G Sbjct: 74 PILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR---SAGKASPVITNG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P + + + E+ L E ++ E M ++G+ +KT + IY D ++ NV Sbjct: 131 PFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYDQ-DFDLDSNV 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E I +LRKKL ++ +++ R GY + Sbjct: 190 IEVFIRRLRKKLDPDNQYNLIETLRGQGYRL 220 >gi|34498090|ref|NP_902305.1| two-component response regulator [Chromobacterium violaceum ATCC 12472] gi|34103945|gb|AAQ60305.1| probable two-component response regulator [Chromobacterium violaceum ATCC 12472] Length = 221 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 106/227 (46%), Gaps = 25/227 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D L+ G + +G ++ S + ++ DV + L E + Sbjct: 3 VLLVEDNRLIAQGIVTGLRANGCIVDAVGSAAQADLALATLNVDVMILNLGL--PDENGM 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R +R +VP++ ++ S++ + +G DD + KP E++AR+ A+ RR+ Sbjct: 61 SLLRRLRTRGVRVPILVLTARDSVEDRVAALRAGADDYLLKPFDLDELVARLHALTRRMA 120 Query: 121 VSNNRAETGPIRVFSDGR---DPEVQGEVF------PLPRRERRILEYLMANRGKRVAKT 171 + + V DGR DP +GEV+ L RRE +L L+ G+ ++ Sbjct: 121 GRS-------VDVIEDGRLRLDP-ARGEVWLDESPVALTRREMALLMALLRADGRILSPD 172 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 Q+ +Y + E +E N + HI LR+ KLG + V + R LGY Sbjct: 173 QLKDRLYD-YSEEIESNALNVHICHLRR----KLGPNVVKTVRGLGY 214 >gi|302188270|ref|ZP_07264943.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae 642] Length = 223 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 75/137 (54%), Gaps = 3/137 (2%) Query: 67 IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +RA S+ +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + R Sbjct: 66 LRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLGGER 125 Query: 126 AETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + + + D R + E+ L RE+ +LE L+A G+ ++K Q+ + ++GL DE Sbjct: 126 QQRCGVLAYDLDTRRFMLGEELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFGL-DEE 184 Query: 185 VEENVVESHISKLRKKL 201 + +E ++ +LRKKL Sbjct: 185 ASPDAIEIYVHRLRKKL 201 >gi|156933148|ref|YP_001437064.1| hypothetical protein ESA_00958 [Cronobacter sakazakii ATCC BAA-894] gi|156531402|gb|ABU76228.1| hypothetical protein ESA_00958 [Cronobacter sakazakii ATCC BAA-894] Length = 226 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 5/162 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ R VP++ ++ + ++ + + G DD + KP E+ AR+ A+ RR + Sbjct: 63 LSRLRRRGQAVPVLLLTAHGAVADRVKGLNEGADDYLPKPFELSELEARLRALVRRSEGQ 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 A+ F D E+QG L RE +L LM R + V + Q+F ++ L D Sbjct: 123 VQEAQRLGELTFHDEGYFELQGRPLALTPREHALLTVLMYRRRRPVTRQQLFEQVFSLSD 182 Query: 183 EAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223 + E+ +E +I +LRKKL L + + + R LGY ++ + Sbjct: 183 DVSPES-IEIYIHRLRKKL---LASNVQITTLRGLGYVLECS 220 >gi|158321191|ref|YP_001513698.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158141390|gb|ABW19702.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 233 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 75/148 (50%), Gaps = 12/148 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR SQVP++ ++ L + D G DD + KP +E++ARV AI+RRL Sbjct: 66 EICKKIRIESQVPILMLTAKVDLTDRIYGLDIGADDYMIKPFSPKELVARVNAIWRRLGE 125 Query: 122 SNNRAETGPIRVFS------DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +A I FS D EV +G++ L E +IL L N GK + ++ Sbjct: 126 DTVKAN---ILSFSNEDLTVDLNKLEVRKKGKLIDLTSTEYKILSLLSKNTGKIFTREEL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 + I G +D + +++HI +R+K+ Sbjct: 183 VTKILG-YDYEGYDRTIDTHIKNIRQKI 209 >gi|299529796|ref|ZP_07043229.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|298722210|gb|EFI63134.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 224 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 105/223 (47%), Gaps = 15/223 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG----E 58 +L++D ALV G A G+ L+GF Q+ A S + ++ G + Sbjct: 4 LLVEDNALVASGVKA-----GLQLQGFGVDVVGCASQADAALKSSHFDVCVLDLGLPDED 58 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + L R R ++P++ ++ ++ ++ +G DD + KP E+ AR+ A+ RR Sbjct: 59 GLHLLARWRRQGLELPVLVLTARDAVDQRIEGLQTGADDYLVKPFDLHELAARLHALLRR 118 Query: 119 LKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G ++V +G + L RRE +L L+ + G+ ++ Q+ ++ Sbjct: 119 AAGRTVDWIVLGDVKVDLAAGQAIREGSIVDLSRREWALLRALLQSPGRVLSLEQLRDSL 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 YG + VE N V H+ LR+ KLG D V++ R +G+ + Sbjct: 179 YG-YSLDVESNAVNVHVHHLRR----KLGSDMVETVRGVGFRL 216 >gi|260577819|ref|ZP_05845753.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258604046|gb|EEW17289.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 234 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 109/224 (48%), Gaps = 26/224 (11%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEKVLELPR 65 R+L+ +GY + DG EE L+ + R D++ ++ + K L++ R Sbjct: 21 RSLIFNGYTVILATDG-----------EEALKLIAEERPDLAILDVMMPKKDG--LDVCR 67 Query: 66 IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 +R+H +P++ ++ S++ + D+G DD + KP E+LAR +++RR + + Sbjct: 68 ELRSHGDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRRAARPAI 127 Query: 124 NRAET-GPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSA 176 ET P+R +PE + +VF L R E +LE LM N K +++ I Sbjct: 128 QEGETREPLRFEDLTLNPETR-DVFRGDRQISLTRTEFALLELLMNNPRKVLSRNTILEE 186 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E +I LR+K + + R +GY++ Sbjct: 187 VWG-YDFPTSGNALEVYIGYLRRKTEANNETRLIHTVRGVGYAL 229 >gi|253997123|ref|YP_003049187.1| winged helix family two component transcriptional regulator [Methylotenera mobilis JLW8] gi|253983802|gb|ACT48660.1| two component transcriptional regulator, winged helix family [Methylotenera mobilis JLW8] Length = 221 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 25/161 (15%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126 A P+I ++ Q + F+SG DD V+KP E+LARV A+ +R + NRA Sbjct: 69 AQINTPVIILTARGGWQDKVAGFNSGADDYVSKPFQIEELLARVGAVLKRSML--NRASE 126 Query: 127 ---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E +F DG + L E R+L Y M + G ++K+ + + Sbjct: 127 LQSTQFKLNEHTQSIIFDDGNQQQ-------LTNVEFRLLRYFMLHPGHILSKSVLTEHV 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 Y +DE + NV+E +I++LR+ K+G + ++R GY Sbjct: 180 YE-YDEDKDSNVIEVYINRLRQ----KIGSQHIQTRRGQGY 215 >gi|210614659|ref|ZP_03290270.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787] gi|210150649|gb|EEA81658.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787] Length = 224 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 12/169 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + IR+H P++ ++ + F G DD + KP E+ ARVAA RR Sbjct: 61 LTVCEKIRSHISCPILFLTARIETADKIKGFQVGADDYIIKPFDIDELGARVAAHLRR-- 118 Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + +R FS+ R+ + G L ++E I+E L N G+ + +I+ Sbjct: 119 -ENRKQGQSELRFFSEMVIDYSKREVSINGTPVNLSKKEFDIVELLSLNAGQVFDRERIY 177 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 A++GL E + ++E HI K+R K +++ +GY WN Sbjct: 178 EAVWGLDGEGNSDTIME-HIRKIRSKFTALSHHSYIETVWGVGYK--WN 223 >gi|119486576|ref|ZP_01620626.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119456193|gb|EAW37325.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 253 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 78/143 (54%), Gaps = 8/143 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NR 125 IR S+VP+I ++ + + + G DD + KP +E+ AR+ AI RRL+ +N NR Sbjct: 79 IRTQSEVPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIQAILRRLRETNANR 138 Query: 126 ---AET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 AET +R+ + R ++ PL E +LE L+ + G+ V++++I ++G Sbjct: 139 DVSAETIQVDALRIDTIKRRVYKGEQLIPLTYIEFNLLELLLKHSGEAVSRSEILQELWG 198 Query: 180 LFDEAVEE-NVVESHISKLRKKL 201 + + VV+ H+++LR K+ Sbjct: 199 YAPRRIADMRVVDVHVARLRAKI 221 >gi|116496108|ref|YP_807842.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|116106258|gb|ABJ71400.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] Length = 233 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 17/169 (10%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR SQVP+I ++ + + G DD + KP E++ARV R +N Sbjct: 68 RKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALR-----HN 122 Query: 125 RAETGPIRVFS------DGRDPEVQ-GEV-FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R P +F D + VQ GEV PL +RE +L L+A++ + ++ + +A Sbjct: 123 RQAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLAA 182 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223 ++G FD + N+++ +I LR K+ + G + + R +GY + N Sbjct: 183 VWGTDFDG--QPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229 >gi|17229456|ref|NP_486004.1| two-component system response regulator [Nostoc sp. PCC 7120] gi|17131054|dbj|BAB73663.1| two-component system response regulator [Nostoc sp. PCC 7120] Length = 236 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 7/151 (4%) Query: 57 GEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ LE+ + +R ++ P++ ++ +L + D+G DD + KP RE+LARV A+ Sbjct: 62 GKTGLEICQELRRQGKITPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRAL 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAK 170 RR A G + V D E QG V L ++E ++L+Y M + G+ + Sbjct: 122 LRRSSSQTYEATPGRLTVADLELDCENQVAYRQGRVIELSQKESQLLQYFMEHTGQLLTH 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 QI ++ +E NV+ + I LR+K+ Sbjct: 182 AQILQHLWE-DNEPPNSNVIAALIRLLRRKI 211 >gi|304317628|ref|YP_003852773.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779130|gb|ADL69689.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 225 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 9/160 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L + +R+ S +P+I ++ + + G DD + KP + RE++AR+ A++RR Sbjct: 61 LTLCKEVRSFSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRRTT 120 Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + G I + + + G+ L +E +L L +N GK +K ++ Sbjct: 121 SPFVKKHDIIKIGDITINIPDKIVQKNGKEIDLTNKEFDLLVLLASNPGKLYSKDKLMDL 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 I+G FD + N V HI KLR+K+ + DP + K Sbjct: 181 IWG-FDFYGDTNTVNVHIRKLREKIED----DPANPKHIF 215 >gi|238854466|ref|ZP_04644805.1| two-component system regulator [Lactobacillus jensenii 269-3] gi|260665486|ref|ZP_05866333.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii SJ-7A-US] gi|282934536|ref|ZP_06339788.1| response regulator ArlR [Lactobacillus jensenii 208-1] gi|313471830|ref|ZP_07812322.1| DNA-binding response regulator CsrR [Lactobacillus jensenii 1153] gi|238832893|gb|EEQ25191.1| two-component system regulator [Lactobacillus jensenii 269-3] gi|239530126|gb|EEQ69127.1| DNA-binding response regulator CsrR [Lactobacillus jensenii 1153] gi|260560754|gb|EEX26731.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii SJ-7A-US] gi|281301374|gb|EFA93666.1| response regulator ArlR [Lactobacillus jensenii 208-1] Length = 240 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 11/151 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LE+ R +R P+I ++ S+ + D G DD + KP E+LAR+ A+ RR+ Sbjct: 61 LEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVN 120 Query: 120 ---KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 KVS+N A + F+D R + L +RE +L L+ N+ V++ Sbjct: 121 IEKKVSSNTAIKQKVVKFNDLTIETANRIVHRGDKTIDLTKREYNLLMTLIDNKNNVVSR 180 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q+ + I+G + +E NVVE ++ LR K+ Sbjct: 181 EQLLNKIWG-PESNIETNVVEVYVRYLRNKI 210 >gi|19704596|ref|NP_604158.1| two-component response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296327707|ref|ZP_06870248.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714890|gb|AAL95457.1| Two-component response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296155193|gb|EFG95969.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 233 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 3/142 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R ++ P+I I+ S+ ++ D G +D + KP E+LAR+ R + Sbjct: 71 EVCQELRKLAETPIIIITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVATRNKEN 130 Query: 122 SNNRAETGPIRVFSDGRDPEV-QGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 SNN+ + D +V EV L + E ILEY M N+G ++ +I ++G Sbjct: 131 SNNKQFYLENEIKMDILAKKVFLNEVEVSLTKTEFLILEYFMKNKGLSCSREKIIIGVWG 190 Query: 180 LFDEAVEENVVESHISKLRKKL 201 +D EE +V+ +I+ LRKK+ Sbjct: 191 -YDFDGEEKIVDVYINSLRKKI 211 >gi|295093611|emb|CBK82702.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 228 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 8/157 (5%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G+G L+ R +R ++VP+I ++ + ++ F +G DD + KP + R+ A Sbjct: 57 GRG---LDYCRELRKSTKVPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEA 113 Query: 115 IYRRLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + RR + V R G + V + + E L E RILE L+ N+G+ + Sbjct: 114 VLRRSENALDGVKRERFHYGDMSVDFERMQVYISDEPIKLSVTEYRILELLIKNKGRVLT 173 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 + I I+ + V+EN + HI +LR+K+ G Sbjct: 174 RDMIIQKIWDDNENYVDENTLNVHIRRLRQKIEKDAG 210 >gi|323527236|ref|YP_004229389.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323384238|gb|ADX56329.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 220 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 82/162 (50%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 LDVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQ 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S++ G + + + G L RE +LE L+A G ++K+Q+ +Y Sbjct: 120 AGRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + E + N VE +I LRK KLG D + + R LGY I Sbjct: 180 G-WGEEIGSNTVEVYIHALRK----KLGADLIRNVRGLGYMI 216 >gi|259047260|ref|ZP_05737661.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259036036|gb|EEW37291.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 235 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 84/156 (53%), Gaps = 17/156 (10%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P++ I+ L++ + F GVDD + KPI E++ RV A+ RR ++ ET + Sbjct: 82 LPILMITAKSQLESLEEAFKLGVDDYMVKPIRLTELVLRVQALLRRAQL-----ETEKVL 136 Query: 133 VFSDGR---------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 +F R D E + EV+ +PR+E +L L++N K + + I+G+ +E Sbjct: 137 LFEHTRLDYNALTLTDLE-RDEVYQIPRKEFYLLYKLLSNPEKIFTRLDLLDDIWGM-EE 194 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++E +V++ I ++R+K + F+ V + R LGY Sbjct: 195 DLDERLVDACIKRVRQKFKENKDFEIV-TIRGLGYK 229 >gi|254000175|ref|YP_003052238.1| winged helix family two component transcriptional regulator [Methylovorus sp. SIP3-4] gi|313202139|ref|YP_004040797.1| winged helix family two component transcriptional regulator [Methylovorus sp. MP688] gi|253986854|gb|ACT51711.1| two component transcriptional regulator, winged helix family [Methylovorus sp. SIP3-4] gi|312441455|gb|ADQ85561.1| two component transcriptional regulator, winged helix family [Methylovorus sp. MP688] Length = 223 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 10/175 (5%) Query: 36 EWLQSSAREDVSAIE----AFLIGKG---EKVLELPRIIRAHSQ-VPLIGISDYPSLQTT 87 +W Q + DV+ E A ++ G LE+ R +R Q VP++ +S L Sbjct: 28 DWTQDGQQADVALHEQVYDAVVLDLGLPRMDGLEVLRRLRQRKQLVPVVILSAREGLDDR 87 Query: 88 LDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV 146 + D G DD + KP E+ AR+ A I R +V + + GP+R S R V G + Sbjct: 88 VHGLDLGADDYLTKPFKLPELEARLRAQIRRSHQVVTSYIDFGPMRFDSTDRTVTVNGAL 147 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +RE +LE L+ G+ V+K + + +D V N +E ++ +LRKKL Sbjct: 148 VEFSQRELSVLEALILRSGRVVSKESLVENLCN-WDVDVGNNAIEVYVHRLRKKL 201 >gi|154482551|ref|ZP_02024999.1| hypothetical protein EUBVEN_00218 [Eubacterium ventriosum ATCC 27560] gi|149736576|gb|EDM52462.1| hypothetical protein EUBVEN_00218 [Eubacterium ventriosum ATCC 27560] Length = 228 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 86/175 (49%), Gaps = 19/175 (10%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL+ R ++ +++P+I ++ S + D G DD + KP E+++RV A+ Sbjct: 60 GLSVLKDVRAEQSTAKLPVIMVTAKTSEMDKVKGLDQGADDYMTKPFGIMELISRVKALL 119 Query: 117 RRLKVSNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RR VS + +V DG++ E L +E ++L+ L+ N G Sbjct: 120 RRANVSGGSHIYSFDGITMDDAKHQVLVDGQETE-------LTYKEYQLLKMLIQNSGIV 172 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + ++QI ++G+ D E ++ HI LR+K+ K + + R +GY++++ Sbjct: 173 LQRSQILDRVWGI-DYEGESRTLDMHIKTLRRKIGEKGSL--IQTVRNVGYTMNY 224 >gi|307138638|ref|ZP_07497994.1| transcriptional regulatory protein YedW [Escherichia coli H736] gi|331642590|ref|ZP_08343725.1| transcriptional activator protein CopR [Escherichia coli H736] gi|331039388|gb|EGI11608.1| transcriptional activator protein CopR [Escherichia coli H736] Length = 260 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNINITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254 >gi|253688253|ref|YP_003017443.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754831|gb|ACT12907.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 229 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/222 (22%), Positives = 102/222 (45%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L++ + G ++ + + ++ D++ ++ L E + Sbjct: 3 ILVVEDNVLLRHHLTVQMNEMGHQVDAASDAKEADYFLHENMPDIAIVDLGL--PDEDGM 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R R H ++P++ ++ Q + ++G DD V KP H E++AR+ A+ RR Sbjct: 61 SMIRRWRTHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMRRNS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ P + R+ + G L E I+E L+ N+GK V+K + +Y Sbjct: 121 GLASQVISLPPFEIDLSRRELVIHGSPIKLTAFEYTIIETLIRNKGKVVSKESLMLQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E + ++ + +LRKK++ D + + R GY D Sbjct: 181 -DAELRESHTIDVLMGRLRKKIQQAEAPDVITTVRGQGYRFD 221 >gi|239502903|ref|ZP_04662213.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB900] Length = 220 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GEKVL R VP+I I+ S+ ++ D G +D + KP E+ AR+ A Sbjct: 59 GEKVLTTIR--HKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQL 116 Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+ +S T G +++ + + G+ L +E +IL LM + + + Q+ Sbjct: 117 RKQTLSQQSILTWGDLQLDTQAKVVLSAGKTIDLTAKEFQILRKLMVHPDHIITRDQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A+Y + E +E N +E I +LRK K+G + + R LGY + Sbjct: 177 ALYA-WGEEIESNAIEVFIYQLRK----KIGSSSIKTIRGLGYRM 216 >gi|227552318|ref|ZP_03982367.1| response regulator [Enterococcus faecium TX1330] gi|227178541|gb|EEI59513.1| response regulator [Enterococcus faecium TX1330] Length = 244 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 75/140 (53%), Gaps = 7/140 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVS 122 IR S+VP+I IS + + + G DD V KP ++A++ A+ RR ++S Sbjct: 87 IREVSKVPIIFISSRNTNMDMIMAMNMGADDFVTKPFQIDVLIAKINALLRRSYNYTELS 146 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + I + D E+ GE+ L + E R+L LM + GK +++ ++ A++ D Sbjct: 147 SEMMSHNGITLNVDNGSMEINGEIIDLSKNEYRLLFILMKHNGKILSREKLLRALWD--D 204 Query: 183 EA-VEENVVESHISKLRKKL 201 E V++N + +I++LR+K+ Sbjct: 205 ERFVDDNTLTVNINRLRRKI 224 >gi|189467435|ref|ZP_03016220.1| hypothetical protein BACINT_03824 [Bacteroides intestinalis DSM 17393] gi|189435699|gb|EDV04684.1| hypothetical protein BACINT_03824 [Bacteroides intestinalis DSM 17393] Length = 225 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 6/152 (3%) Query: 55 GKGEKVL-ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G G +L EL R+ R+ S ++ IS SL ++ + G DD + KP H E+ ARV Sbjct: 57 GSGLDLLRELKRLHRSDS---VLIISAKDSLDDKVEGLELGADDYLTKPFHLAELNARVK 113 Query: 114 AIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ RR + + + T G + ++ D R EV G L R+E +L Y + N + + K Sbjct: 114 SVIRRRQAKGDVSITVGNLLLYPDKRQVEVGGVPLQLNRKEFDLLYYFIVNPNRVINKMS 173 Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRN 203 + +++G D+A + + S + LR+KL+ Sbjct: 174 LAESVWGDNIDQADSLDFIYSQVKNLRRKLKQ 205 >gi|182417787|ref|ZP_02949103.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237667113|ref|ZP_04527097.1| putative lantibiotic biosynthesis regulatory protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378511|gb|EDT76042.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237655461|gb|EEP53017.1| putative lantibiotic biosynthesis regulatory protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 220 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 3/157 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR P++ ++ + + G DD ++KP +E+ ARV A RR + Sbjct: 62 LCRKIRNLVDCPILFLTAKNMEEDVVTGLSVGGDDYISKPFSIKELRARVEAHLRRERRE 121 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 A I+ + + P + E I EYL N G+ +K +I+ I+G F Sbjct: 122 KQNAFSISGIKFNLASKQISFNENIIPFTKSEYAICEYLALNHGQVFSKEKIYENIFG-F 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D + + + HI +R K + K+G +P+++ +GY Sbjct: 181 DGESDISAIVEHIKNIRNKFK-KIGINPIETVWGIGY 216 >gi|189499944|ref|YP_001959414.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides BS1] gi|189495385|gb|ACE03933.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides BS1] Length = 222 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 1/153 (0%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 + H+QVP+I ++ L + +SG +D + KP E+LAR+ R + Sbjct: 68 KEHAQVPVIFLTAKGDLDDVIFGLESGANDYMKKPFAFEELLARIRVQLRLSGSETVMMQ 127 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + + G+ L +E +LEYL+ NRG +++I ++ + +A + Sbjct: 128 AGGVEMNLAAHRVTCNGKDVSLTPKEFALLEYLLRNRGSVCTRSRIIEHVWDIHFDA-DT 186 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +V++ +++ LRKKL +++ R +GY I Sbjct: 187 SVIDVYVNFLRKKLDGAGCGALIETVRGVGYVI 219 >gi|310830024|ref|YP_003962381.1| two-component system protein response regulator [Eubacterium limosum KIST612] gi|308741758|gb|ADO39418.1| two-component system protein response regulator [Eubacterium limosum KIST612] Length = 239 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 8/148 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR S P++ +S + SG DD + KP +E++ RV A RRL+ Sbjct: 67 IEVCRAIREFSYCPVLFLSARNDDVDKILGLSSGGDDYITKPFSPKELVFRVKAQLRRLE 126 Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + R G + + DG G L RE IL YL N GK ++K ++ Sbjct: 127 YNKTAEAAAGRRIRVGGLEIDVDGSRVYQDGRELGLTAREFGILLYLAENAGKIISKDRL 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 + ++G AV +N + HI LR+K+ Sbjct: 187 YEQVWGEL-SAVCDNTIMVHIRHLREKI 213 >gi|300853659|ref|YP_003778643.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300433774|gb|ADK13541.1| transcriptional regulatory protein [Clostridium ljungdahlii DSM 13528] Length = 231 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 12/152 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GEK++E R ++ +P+I IS + +T ++ G DD ++KP E+LARV A Sbjct: 63 GEKLIEKIRKVKT---MPVIVISAKTAQETKIEVLKLGADDFISKPFDVEEVLARVCAQL 119 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAK 170 RR + +N E I + + +VF L RE ILE LM+ K K Sbjct: 120 RRYMIFSNSNEKQNILTYKNMTLDRENHKVFIRSQEVLLTIREFCILELLMSYPKKVFTK 179 Query: 171 TQIFSAIYGLFDEAV-EENVVESHISKLRKKL 201 +F ++ D+ + ++N + H+S LR K+ Sbjct: 180 ANLFEHVWK--DKFISDDNTINVHMSNLRSKI 209 >gi|238757565|ref|ZP_04618750.1| Transcriptional regulatory protein basR/pmrA [Yersinia aldovae ATCC 35236] gi|238704327|gb|EEP96859.1| Transcriptional regulatory protein basR/pmrA [Yersinia aldovae ATCC 35236] Length = 220 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 107/221 (48%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L++ G +G + + + L +++ + ++ L + VL Sbjct: 3 LLIVEDDELLQRGVAMALTSEGYACDCAGTAAQAHSLLQTSQYSMVILDLGLPDQDGTVL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L + R +P++ ++ +L+ +D D+G DD + KP E+LARV A+ RR + Sbjct: 63 -LRQWRRQQVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +S+N E + + + +QG+ + +E IL L+ G+ + + + +Y Sbjct: 122 LSDNLVEQDDLSLNLSSQQVCLQGQPIEITPKEFAILSRLIMRAGQTINRELLQQDLYTW 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D+ + N +E HI LR+ KLG D + + R +GY ++ Sbjct: 182 NDD-LGSNTLEVHIHNLRR----KLGKDRIRTIRGIGYRLE 217 >gi|152975977|ref|YP_001375494.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024729|gb|ABS22499.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 225 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 6/147 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +N I V R V G+ L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEDNVLSAAGIDVNRLSRTVFVDGKEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 +G +D ++ V++HI KLR KL +K Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK 209 >gi|332186443|ref|ZP_08388187.1| response regulator [Sphingomonas sp. S17] gi|332013426|gb|EGI55487.1| response regulator [Sphingomonas sp. S17] Length = 226 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---G 129 VP+I ++ +D ++G DD V KP+ E+ AR+ A+ R + + ++T G Sbjct: 75 VPVIMLTALSMASDKVDGLEAGADDYVVKPVAAEELNARINAVLRGRRWTVGESDTIRAG 134 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I V G+ L E ++L L + G+ + + + ++G ++ E NV Sbjct: 135 DIVVSPTSFRAWRAGQPIALANLELKLLTELARHAGEVLTRAMLIERVWG-YEFEPETNV 193 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+ +I +LR KL G DP+++ R +GYS+ Sbjct: 194 VDVYIRRLRVKLTEAGGSDPIETVRGIGYSL 224 >gi|298241797|ref|ZP_06965604.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554851|gb|EFH88715.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 222 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 91/201 (45%), Gaps = 4/201 (1%) Query: 23 GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGIS 79 G++ EGF + + E L ++ + + + G LEL R + + +I ++ Sbjct: 21 GLAYEGFEVYTAPDGETGLAATKKYQPHLVLLDIAMPGLDGLELCRRLHVLGDIAIIMLT 80 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRD 139 + + G DD V KP E++AR+ A+ RR S + + R+ Sbjct: 81 ARDDVADKVHALGLGADDYVPKPFSFDELVARMRAVLRRHTGSQEMLSYSDLELNQATRE 140 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 G++ L RE +L LM + + + + QI ++G ++ +E NV+E H+ LR+ Sbjct: 141 VHRDGQLIELTTREYDLLLLLMRHPRQVLTRDQILEQVWG-YNADLETNVLEVHMGHLRQ 199 Query: 200 KLRNKLGFDPVDSKRFLGYSI 220 KL G + + R +GY + Sbjct: 200 KLEASGGSRVIQTIRGVGYVL 220 >gi|239616953|ref|YP_002940275.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239505784|gb|ACR79271.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 233 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 3/162 (1%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L++ R +R + P++ ++ S + + ++G DD + KP E+LAR+ AI RR Sbjct: 60 LKVCREVRENGISTPILMLTALDSTEDKVTGLNAGADDYLVKPFSFSELLARIRAILRRP 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N + + G + + + E G+ L RE +LE+LM + + +++T+I ++ Sbjct: 120 PTILNLKLQVGDLVLDTVTHHVERSGKRIDLTPREYALLEFLMRHPNQVLSRTRIVEHVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 L D E N+V+ +I LRKK+ N + + +GY I Sbjct: 180 NL-DFYTESNIVDVYIRYLRKKIDNGFENKLIHTVHGVGYMI 220 >gi|186471094|ref|YP_001862412.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184197403|gb|ACC75366.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 223 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + RA +P++ ++ ++ + D G DD V KPI E+ AR+ A+ RR Sbjct: 63 LSSVRRAGVTMPVLVLTARDTVPDRVRGLDIGADDYVVKPIDLLELAARLRALVRRAHGQ 122 Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E + + R GE + RE +L LM N G+ +++ Q+ A+YG + Sbjct: 123 PQEKLEVQDVILEPAARLVYRNGEPVTVSTREFDLLYVLMLNAGRVMSREQLEQAMYG-W 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 VE N VE HI +LR KLG D + + R +GY + Sbjct: 182 GREVESNTVEVHIHRLRA----KLGSDLIRTVRGVGYVL 216 >gi|110834570|ref|YP_693429.1| DNA-binding response regulator [Alcanivorax borkumensis SK2] gi|110647681|emb|CAL17157.1| DNA-binding response regulator [Alcanivorax borkumensis SK2] Length = 222 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 9/164 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VLE R+ VP++ ++ S ++ SG DD + KP H E+L RV A+ Sbjct: 59 GLQVLEQWRV--EGQAVPVLILTARDSWAERIEGLQSGADDYLAKPFHPDELLLRVQALL 116 Query: 117 RRLKVSNNRAE-TGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR N ++ T + R G E L E R+L Y M N + ++K Q+ Sbjct: 117 RRTHGRANTSQLTAGTFTLDENRHSVWSGEEEIRLTGAEFRMLRYFMHNPDRLLSKGQLA 176 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 S +Y + + NV+E H+++LR+ KLG ++++R GY Sbjct: 177 SHLYD-NESDRDSNVLEVHVNRLRR----KLGKTVIETRRGQGY 215 >gi|110799967|ref|YP_697175.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|110674614|gb|ABG83601.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] Length = 228 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 4/145 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 +E+ + IR S VP+I ++ + + G DD V KP +E+LARV A+ RR Sbjct: 65 MEVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124 Query: 120 -KVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +N P + + ++ GE P +E +L YL +N+ K + Q+ + Sbjct: 125 GEEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202 +G +D + V+ HI +LR+KL Sbjct: 185 WG-YDYPGDSRTVDVHIKRLREKLN 208 >gi|29830741|ref|NP_825375.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607854|dbj|BAC71910.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 269 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 20/207 (9%) Query: 31 SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78 +L +E W SA + A++ ++ + + L R+ R VP++ + Sbjct: 61 ALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMMLPDMDGLTVLGRLRRELPDVPVLFL 120 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134 + +++ + +G DD V KP E++AR+ + RR ++ R+++ G + + Sbjct: 121 TAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAADRRSDSMLVVGDLTLD 180 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D + GE L E +L +LM N + ++K QI ++ +D + NVVE +I Sbjct: 181 EDSHEVSRSGENIHLTATEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 239 Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220 S LR+K+ G +P + ++R GY I Sbjct: 240 SYLRRKI--DAGREPMIHTRRGAGYLI 264 >gi|89108797|ref|AP_002577.1| predicted DNA-binding response regulator in two-component system withYedV [Escherichia coli str. K-12 substr. W3110] gi|90111362|ref|NP_416478.2| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli str. K-12 substr. MG1655] gi|170081609|ref|YP_001730929.1| DNA-binding response regulator in two-component system with YedV [Escherichia coli str. K-12 substr. DH10B] gi|238901170|ref|YP_002926966.1| putative DNA-binding response regulator in two-component system with YedV [Escherichia coli BW2952] gi|13878938|sp|P76340|YEDW_ECOLI RecName: Full=Probable transcriptional regulatory protein yedW gi|85675172|dbj|BAA15796.2| predicted DNA-binding response regulator in two-component system withYedV [Escherichia coli str. K12 substr. W3110] gi|87082012|gb|AAC75035.2| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli str. K-12 substr. MG1655] gi|169889444|gb|ACB03151.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli str. K-12 substr. DH10B] gi|238862252|gb|ACR64250.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli BW2952] Length = 223 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 42 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 101 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S L R+E ++L L + Sbjct: 102 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLAS 161 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 162 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 >gi|284920956|emb|CBG34019.1| two-component response regulator [Escherichia coli 042] Length = 223 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P++ ++ S Q ++ +G DD V KP H E++AR+ A+ RR +++ P Sbjct: 73 LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 +V R+ + EV L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 133 QVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +LRKK++ + + + + R GY Sbjct: 192 VLMGRLRKKIQAQYPQEVITTVRGQGY 218 >gi|255319358|ref|ZP_05360575.1| transcriptional activator protein IrlR [Acinetobacter radioresistens SK82] gi|262379800|ref|ZP_06072956.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255303751|gb|EET82951.1| transcriptional activator protein IrlR [Acinetobacter radioresistens SK82] gi|262299257|gb|EEY87170.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 223 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/214 (24%), Positives = 98/214 (45%), Gaps = 26/214 (12%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI--------IRAHSQVPLIGI 78 +G + WL RE + E I + LP + +R S+VP++ + Sbjct: 18 KGLTESGYRTWLAHDGREGLMLFEQHAIDLVILDVMLPELNGWQVIQTLRQFSEVPVLFL 77 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGP 130 + S+ + + G DD + KP + E+LARV + RR L+V N + + Sbjct: 78 TARDSVLDRVKGLELGADDYLVKPFSYIELLARVKTLLRRSSAKVVEQLQVENLKIDLLE 137 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189 +V+ D + L +E +L +L ++G+ + +TQI S ++ + FD + NV Sbjct: 138 HKVYRD-------RNLIELTNKEYALLRFLAEHQGEIMTRTQIASQVWNINFD--TDTNV 188 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 V+ + +LR K+ + + + R +GY +D N Sbjct: 189 VDVAVRRLRAKIDDAYQPKLIHTIRGMGYKLDTN 222 >gi|253773085|ref|YP_003035916.1| transcriptional regulatory protein YedW [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253324129|gb|ACT28731.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448922|gb|ACX39344.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli DH1] gi|315136606|dbj|BAJ43765.1| transcriptional regulatory protein YedW [Escherichia coli DH1] Length = 260 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254 >gi|325275459|ref|ZP_08141389.1| winged helix family two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324099410|gb|EGB97326.1| winged helix family two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 223 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 80/152 (52%), Gaps = 8/152 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPI 131 +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + R + GP+ Sbjct: 73 LPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLGGERQQRCGPL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 D R + + L RE+ +LE L+A G+ ++K Q+ + ++GL DE + +E Sbjct: 133 VYDLDTRRFALGDDNLTLTSREQSVLEALIARPGRVMSKEQLAAQVFGL-DEEASPDAIE 191 Query: 192 SHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221 +I +LRKKL + PV + R LGY ++ Sbjct: 192 IYIHRLRKKLDGQ----PVAIVTFRGLGYLLE 219 >gi|311696859|gb|ADP99732.1| two component transcriptional regulator, winged helix family [marine bacterium HP15] Length = 224 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 15/171 (8%) Query: 61 LELPRI--------IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L LPR+ +R+ + P+I ++ L L ++G DD + KP E+ AR Sbjct: 49 LTLPRVDGLDIVKKVRSQGIETPVIILTARGDLDEKLQGLNAGADDYLTKPFAMAELKAR 108 Query: 112 VAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + A+ RR + G + + D ++ E LPR E +IL YLM + + + Sbjct: 109 IRAVTRRGAGFRTGGLQVGRLILDPDSGQLKLGTETAALPRSEFQILHYLMRHPDQVATR 168 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ +YG +++ E N +E H+ LR+ ++G + + R +GY +D Sbjct: 169 RRLEEQLYG-WEQGAESNALEVHVHHLRR----RVGKQTIRTVRGVGYMLD 214 >gi|199596926|ref|ZP_03210359.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258507695|ref|YP_003170446.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|199592059|gb|EDZ00133.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257147622|emb|CAR86595.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|259649042|dbj|BAI41204.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 231 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L + +RA + P++ ++ +L + F+ G DD + KP H E++ R+ A+ +R Sbjct: 63 FDLLKQLRAKQVKTPVLILTAKDALTDKVRGFELGGDDYLTKPFHREELIMRLKALLKRT 122 Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + GP V + + + + L +E +L YL+ N+ + K QIF + Sbjct: 123 GHFFDEDGLTAGPFEVHLNRHEVLIHDKPVALNGKEFDLLVYLLQNQKTIITKDQIFDRL 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +G FD +VVE ++S LRKKL+ + + R +GY Sbjct: 183 WG-FDSDTAVSVVEVYMSNLRKKLKPMQADVWIKTIRNVGY 222 >gi|90961498|ref|YP_535414.1| two-component response regulator [Lactobacillus salivarius UCC118] gi|90820692|gb|ABD99331.1| Two-component response regulator [Lactobacillus salivarius UCC118] Length = 228 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 93/189 (49%), Gaps = 10/189 (5%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L+ + ED AI L+ L++ R +R P+I ++ S+ + D G DD Sbjct: 38 LELALDEDWDAILLDLMLPELNGLDICRRVRQVKNTPIIMMTARDSVIDRVSGLDHGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSN----NRAETGPIRVFSDGRDPEV---QGEVFPLP 150 + KP E+LAR+ A+ RR+++ N N+ T R + ++ V E+ L Sbjct: 98 YIVKPFAIEELLARLRAVLRRVELENEQNGNKQTTLTYRDLTIEKENRVVRRGDEIIELT 157 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP- 209 +RE +L LM N +A+ + ++G ++ +E NVV+ +I LR K+ ++ G D Sbjct: 158 KREYELLLTLMENINVVLARDTLLKKVWG-YETQIETNVVDVYIRYLRNKI-DRPGEDSY 215 Query: 210 VDSKRFLGY 218 + + R GY Sbjct: 216 IQTVRGTGY 224 >gi|328882443|emb|CCA55682.1| two component transcriptional regulator, winged helix family [Streptomyces venezuelae ATCC 10712] Length = 234 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 6/159 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R S +P++ +S + + SG DD + KP H E+LARV A+ RR + E Sbjct: 68 RDMSDLPVLVLSGLGDVDDRVRGLRSGADDYLVKPFAHPELLARVDALLRRSGPGSWAGE 127 Query: 128 T--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + +R+ + R QG L E R+L+ L+ NRG+ V Q+ ++ ++ Sbjct: 128 SVGEDLRLVPERRAALWQGSEIRLSDIEYRLLQLLVRNRGRVVTTEQLLDQVWD-DPTSI 186 Query: 186 EENVVESHISKLRKKLRNKLG---FDPVDSKRFLGYSID 221 + V+ + +LR+KLR G DP+++ R LGY D Sbjct: 187 GRDRVKFAVLRLRRKLRTAGGPASRDPLEAIRGLGYRYD 225 >gi|268609091|ref|ZP_06142818.1| regulatory protein VanR [Ruminococcus flavefaciens FD-1] Length = 239 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 10/149 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S +P+I +S + ++ G DD + KP E+L RV A+ RR +N+ Sbjct: 68 IREFSDIPVIVVSAKSETHSKIELIRMGADDYITKPFDLDELLVRVEAVLRRYDGNNHTN 127 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + I + V G L +E IL+ ++ N K +K +F +++G Sbjct: 128 QEQKILTCKNLSLDLTSGIATVYGNALTLTVKEYTILQLMLENPTKLWSKANLFESVWG- 186 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP 209 + ++N V+ H+S +R+KL+ DP Sbjct: 187 ENYLSDDNTVKVHMSNIRQKLKK---LDP 212 >gi|227498372|ref|ZP_03928522.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] gi|226903834|gb|EEH89752.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] Length = 274 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 9/171 (5%) Query: 57 GEKVLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 GE +E+ + IR + +P+I ++ S + G DD V KP E+++R+ Sbjct: 103 GESGIEILKKIRHKERTADLPVIMLTARTSEYDVVKGLTIGADDYVTKPFGILELISRIR 162 Query: 114 AIYRRLKVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 A+ RR +E GP+ + GE L +E +L YLM N G + + Sbjct: 163 AVLRRSHRVEKPSEMLVCGPVTLDPLKHAVSAYGEEVMLTAKEFELLHYLMMNVGIVLQR 222 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 QI +++G F A E ++ HI LR+KL G + + R +GY +D Sbjct: 223 EQIMESVWG-FTYAGESRTIDMHIKSLRQKLGE--GGQIIKTIRGVGYRLD 270 >gi|150388130|ref|YP_001318179.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149947992|gb|ABR46520.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 216 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 97/201 (48%), Gaps = 13/201 (6%) Query: 26 LEGFNSLEF---EEWLQ--SSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80 + G+ +LE EE LQ ++ + D+ ++ L + L LP+I++ + +P I ++ Sbjct: 23 MAGYETLEACDGEEGLQYLNNEKIDLVLLDVMLPQQDGYTL-LPKILKKN--IPTIMLTA 79 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP 140 L+ + + G DD V KP E+LARV + RR + I + D Sbjct: 80 KDRLKDKVKGLEMGADDYVTKPFEAMELLARVKCVLRRSDKEKTKIVMDDIEICLDQWKV 139 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 G+ L +E +L L+ N+G +++ ++ ++G ++ V+ HI ++ Sbjct: 140 LKDGKEVDLTYKEFDLLRLLIENKGNVMSRDRLLELVWG-YEFEGNTRTVDMHI----QR 194 Query: 201 LRNKLGFDPVDSKRFLGYSID 221 LRNK+G D + + +GY ++ Sbjct: 195 LRNKIGADKIKTIYKVGYRME 215 >gi|298293994|ref|YP_003695933.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296930505|gb|ADH91314.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 233 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +RA + +P++ ++ + +G DD V KP E++ARV A+ R Sbjct: 62 IELCRRLRARPETERMPILMLTARGEETERVRGLATGADDYVVKPFSVPELVARVRALLR 121 Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R K + G I + + + G L E R+LE+LM + G+ ++ Q+ Sbjct: 122 RAKPEHISTLLRAGDIELDRETKRVHRAGRELHLGPTEFRLLEFLMQSPGRVYSREQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ H+ +LRK L DP+ + R GYS + Sbjct: 182 GVWGQ-DVYIDERTVDVHVGRLRKALNRPRQPDPIRTVRGSGYSFN 226 >gi|182412431|ref|YP_001817497.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177839645|gb|ACB73897.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 248 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 25/224 (11%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED----VSAIEAFLIGKGEKVLELP 64 LV+ GY L DG E+ ++ RE V IE +G G VL Sbjct: 33 CLVRQGYRVLEAADG-----------EQAMERIVREKPALVVLDIEMPRVG-GLAVLS-- 78 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ + + P++ +S + ++ G DD + KP + E+LAR+ A+ RR + Sbjct: 79 RLRESGNLTPVLIVSSRSHVDDRVNGLSLGADDYLTKPFNQEELLARIRALLRRQAATET 138 Query: 125 ---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + G + V D R +G L R E IL+ L G V++ ++F ++G + Sbjct: 139 PIQRLQFGDVEVALDKRTAVCKGRTTRLSRTECAILDLLARYAGTPVSRERLFDLVWG-Y 197 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223 E +++H+ +LRKK+ + G +P + + +GY +D + Sbjct: 198 TYLPETRTLDTHVWRLRKKIGDT-GEEPRWIKNVPGVGYQLDCS 240 >gi|297582644|ref|YP_003698424.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141101|gb|ADH97858.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 228 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR+ S VP+I ++ + + G DD V KP E++ARV A+ RR K Sbjct: 62 EVCQDIRSFSDVPIIMLTARDGKEDVVKGLRYGADDYVTKPFDEGELMARVDALLRRTKR 121 Query: 122 SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + A G + +GR+ + +GE L +E + + N G+ ++ +I +G Sbjct: 122 QDEAACGG---LVWNGRERALSFEGEAIHLTPKEFDTIGLFLRNPGRAFSREEIIETAWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L E V++HI +R+K++ K GF PV+ K G W Sbjct: 179 L-GSGTEGRTVDTHIRNMREKIK-KSGF-PVEDHLKTVWGKGYKW 220 >gi|146280822|ref|YP_001170975.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501] gi|145569027|gb|ABP78133.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501] gi|327479090|gb|AEA82400.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri DSM 4166] Length = 229 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/213 (23%), Positives = 101/213 (47%), Gaps = 24/213 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 +++DD A +++ + + + G++ LE E Q+ A + D+ ++ L Sbjct: 6 ILIVDDEAPIREMIVV-----ALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWML--P 58 Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ + P+I ++ + + G DD + KP RE++AR+ Sbjct: 59 GTSGIELARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR ++ A PI + DP + G+ + E R+L++ M ++ + Sbjct: 119 AVLRRATPVDSEA---PIEIGGLLLDPVSHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++Q+ ++G + VEE V+ HI +LRK L Sbjct: 176 TRSQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207 >gi|120554212|ref|YP_958563.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120324061|gb|ABM18376.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 221 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 21/227 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +L++D A + + DDG +++ +L F E + D+ ++ L G G L Sbjct: 4 LLVEDTAGLGEAVRDQIADDGHAVDWVQTLRFAEASIRTTAYDLILLDLMLPDGHGFGFL 63 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R IRA P+I ++ + ++ ++G DD + KP E+ ARVAA+ RR Sbjct: 64 ---RTIRATGITTPVIILTARDQVSDRIEGLNAGADDYLVKPFDLSELSARVAAVARRY- 119 Query: 121 VSNNRAETGPI----RVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIF 174 R PI + D D + P L RE + E + G ++++Q+ Sbjct: 120 ----RGNPSPIIQVGELMIDLGDHRISRNGLPVELTAREWALFEGFIQRPGMLLSRSQLE 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +Y F +E N +E ++S+LRK KLG D + + R +GY ++ Sbjct: 176 DRLYA-FGAEIESNTIEVYVSRLRK----KLGRDAIVTVRGMGYRLE 217 >gi|22537765|ref|NP_688616.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 2603V/R] gi|25011712|ref|NP_736107.1| DNA-binding response regulator CsrR [Streptococcus agalactiae NEM316] gi|76788698|ref|YP_330242.1| DNA-binding response regulator CsrR [Streptococcus agalactiae A909] gi|76799420|ref|ZP_00781570.1| CsrR [Streptococcus agalactiae 18RS21] gi|77405803|ref|ZP_00782887.1| DNA-binding response regulator CsrR [Streptococcus agalactiae H36B] gi|77408493|ref|ZP_00785231.1| DNA-binding response regulator CsrR [Streptococcus agalactiae COH1] gi|77411918|ref|ZP_00788249.1| DNA-binding response regulator CsrR [Streptococcus agalactiae CJB111] gi|77414229|ref|ZP_00790391.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 515] gi|22534656|gb|AAN00489.1|AE014265_18 DNA-binding response regulator CsrR [Streptococcus agalactiae 2603V/R] gi|24413252|emb|CAD47331.1| Unknown [Streptococcus agalactiae NEM316] gi|76563755|gb|ABA46339.1| DNA-binding response regulator CsrR [Streptococcus agalactiae A909] gi|76585229|gb|EAO61837.1| CsrR [Streptococcus agalactiae 18RS21] gi|77159718|gb|EAO70867.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 515] gi|77162015|gb|EAO72995.1| DNA-binding response regulator CsrR [Streptococcus agalactiae CJB111] gi|77172935|gb|EAO76066.1| DNA-binding response regulator CsrR [Streptococcus agalactiae COH1] gi|77175590|gb|EAO78375.1| DNA-binding response regulator CsrR [Streptococcus agalactiae H36B] gi|319745623|gb|EFV97924.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 229 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 7/165 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++A ++ ++ S+ + D G DD + KP E+LARV AI+RR ++ Sbjct: 63 EITRRLQAEKTTYIMMMTARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRRQEI 122 Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E G F D R E L +RE +L LM N + + + ++ Sbjct: 123 ETKTKEKGDSGSFRDLSLNTHNRSAMRGDEEISLTKREFDLLNVLMTNMNRVMTREELLE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D A E NVV+ +I LR K+ + + R +GY I Sbjct: 183 HVWK-YDVAAETNVVDVYIRYLRGKIDIPGRESYIQTVRGMGYVI 226 >gi|329955620|ref|ZP_08296528.1| putative DNA-binding response regulator [Bacteroides clarus YIT 12056] gi|328526023|gb|EGF53047.1| putative DNA-binding response regulator [Bacteroides clarus YIT 12056] Length = 225 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 2/127 (1%) Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSD 136 IS SL +D + G DD + KP H E+ AR+ ++ RR + + T G + ++ D Sbjct: 78 ISAKDSLDDKVDGLELGADDYLTKPFHLAELNARIKSLIRRRQTQGDVTVTVGNLLLYPD 137 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVVESHIS 195 R EV G L R+E +L Y + N + + K + +++G D+ + + S + Sbjct: 138 KRQAEVDGAPLQLNRKEFDLLYYFVVNPNRVINKMSLAESVWGDNIDQVDSLDFIYSQVK 197 Query: 196 KLRKKLR 202 LRKKL+ Sbjct: 198 NLRKKLK 204 >gi|291549838|emb|CBL26100.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 228 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 17/173 (9%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE VLE IR +P+I ++ SL ++ SG DD + KP RE+LARV Sbjct: 62 GEAVLEE---IRKKGNLPVIVLTAKDSLDEKVEVLTSGADDYITKPFEIREVLARVQVQL 118 Query: 117 RRLKVSNNRAETGPIRVFSD---GRDP---EVQGEVFP-LPRRERRILEYLMANRGKRVA 169 R AE F D RD E+ G++ P + ++E ILE L+ N + + Sbjct: 119 RH--KEEKEAEEQHTLSFKDMLLNRDTFQVEIDGKILPKITKQEFAILELLLRNPKQVFS 176 Query: 170 KTQIFSAIYGLFDEAV--EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 K IF + DE E ++ HIS +RKK++ + +++ +GY + Sbjct: 177 KEDIFEYAW---DEPYMGETKTLDVHISNIRKKIKQVTSEEYIETVWGIGYRL 226 >gi|209883802|ref|YP_002287659.1| phosphate regulon transcriptional regulatory protein PhoB [Oligotropha carboxidovorans OM5] gi|209871998|gb|ACI91794.1| phosphate regulon transcriptional regulatory protein PhoB [Oligotropha carboxidovorans OM5] Length = 234 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 10/168 (5%) Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +RA Q+P+I ++ + +G DD + KP E+LARV + R Sbjct: 62 IELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121 Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R S R + G I + + R G L E R+LE+ + + G+ ++ Q+ Sbjct: 122 R--ASPERVASVLIYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLQHPGRVFSREQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 180 LDGVWG-RDIYIDERTVDVHIGRLRKLLNPGEEQDPIRTVRGAGYALD 226 >gi|218901847|ref|YP_002449681.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218539651|gb|ACK92049.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 225 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQHAQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLCHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D+ K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220 >gi|49081822|gb|AAT50311.1| PA0463 [synthetic construct] Length = 230 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 107/227 (47%), Gaps = 16/227 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D + + EGF + ++ A ++ + ++ G V+ Sbjct: 4 ILIVEDEAAIADTLLY-----ALQAEGFATTWVTLAGEALALQERQPADLLILDVGLPVI 58 Query: 62 ---ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E + +R S+VP+I ++ + + + G DD V KP RE+ ARV AI +R Sbjct: 59 SGFEACKRLRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKR 118 Query: 119 L----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + A +GP +V + + L R E R+L+ L+ + ++ Q+ Sbjct: 119 MAPRPAALEEAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLL 178 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYS 219 A+ G+ EA E ++SHI LR KLR N+ G + + + R LGYS Sbjct: 179 DAL-GVASEAGYERNIDSHIKSLRAKLRQVNERG-EAIQTHRGLGYS 223 >gi|68536618|ref|YP_251323.1| two-component system response regulator TcsR5 [Corynebacterium jeikeium K411] gi|68264217|emb|CAI37705.1| two-component system response regulator TcsR5 [Corynebacterium jeikeium K411] Length = 231 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 109/224 (48%), Gaps = 26/224 (11%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEKVLELPR 65 R+L+ +GY + DG EE L+ + R D++ ++ + K L++ R Sbjct: 18 RSLIFNGYTVILATDG-----------EEALKLIAEERPDLAILDVMMPKKDG--LDVCR 64 Query: 66 IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 +R+H +P++ ++ S++ + D+G DD + KP E+LAR +++RR + + Sbjct: 65 ELRSHGDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRRAARPAI 124 Query: 124 NRAET-GPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSA 176 ET P+R +PE + +VF L R E +LE LM N K +++ I Sbjct: 125 QEGETREPLRFEDLTLNPETR-DVFRGDRQISLTRTEFALLELLMNNPRKVLSRNTILEE 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E +I LR+K + + R +GY++ Sbjct: 184 VWG-YDFPTSGNALEVYIGYLRRKTEANNETRLIHTVRGVGYAL 226 >gi|120556126|ref|YP_960477.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120325975|gb|ABM20290.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 221 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 21/227 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +L++D A + + DDG +++ +L F E + D+ ++ L G G L Sbjct: 4 LLVEDTAGLGEAVRDQIADDGHAVDWVQTLRFAEASIRTTAYDLILLDLMLPDGHGFGFL 63 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R IRA P+I ++ + ++ ++G DD + KP E+ ARVAA+ RR Sbjct: 64 ---RTIRATGITTPVIILTARDQVSDRIEGLNAGADDYLVKPFDLSELSARVAAVARRY- 119 Query: 121 VSNNRAETGPI----RVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIF 174 R PI + D D + P L RE + E + G ++++Q+ Sbjct: 120 ----RGNPSPIIQVGELMIDLGDHRISRNGLPVELTAREWALFEGFIQRPGMLLSRSQLE 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +Y F +E N +E ++S+LRK KLG D + + R +GY ++ Sbjct: 176 DRLYA-FGAEIESNTIEVYVSRLRK----KLGRDAIVTVRGMGYRLE 217 >gi|77408155|ref|ZP_00784901.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77173255|gb|EAO76378.1| DNA-binding response regulator [Streptococcus agalactiae COH1] Length = 223 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 3/152 (1%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAET 128 SQV ++ ++ +++ + D G DD + KP E++AR+ A+ RR +VS++ + Sbjct: 71 SQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTNRQVSSDDIQI 130 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 I + + + L +E +LEYL +R + +++ QI ++ +D E N Sbjct: 131 QDITINLSTKQVWRNDNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVWD-YDYYGESN 189 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ I LR+KL N + +KR LGY I Sbjct: 190 IIDVLIKNLRRKLDNNRDGSLIKTKRGLGYVI 221 >gi|16129093|ref|NP_415648.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli str. K-12 substr. MG1655] gi|89107976|ref|AP_001756.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli str. K-12 substr. W3110] gi|157160654|ref|YP_001457972.1| DNA-binding transcriptional regulator PhoP [Escherichia coli HS] gi|170020477|ref|YP_001725431.1| DNA-binding transcriptional regulator PhoP [Escherichia coli ATCC 8739] gi|170080781|ref|YP_001730101.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli str. K-12 substr. DH10B] gi|188494074|ref|ZP_03001344.1| DNA-binding response regulator PhoP [Escherichia coli 53638] gi|238900384|ref|YP_002926180.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli BW2952] gi|256023172|ref|ZP_05437037.1| DNA-binding transcriptional regulator PhoP [Escherichia sp. 4_1_40B] gi|300906951|ref|ZP_07124623.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300917903|ref|ZP_07134536.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300949478|ref|ZP_07163476.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300955536|ref|ZP_07167898.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|301029561|ref|ZP_07192639.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|301306074|ref|ZP_07212152.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|301644548|ref|ZP_07244541.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|307137765|ref|ZP_07497121.1| DNA-binding transcriptional regulator PhoP [Escherichia coli H736] gi|312971266|ref|ZP_07785444.1| transcriptional regulatory protein phoP [Escherichia coli 1827-70] gi|331641674|ref|ZP_08342809.1| transcriptional regulatory protein PhoP [Escherichia coli H736] gi|130126|sp|P23836|PHOP_ECOLI RecName: Full=Transcriptional regulatory protein phoP gi|147254|gb|AAA24377.1| phoP [Escherichia coli] gi|216608|dbj|BAA14390.1| PhoP protein [Escherichia coli K-12] gi|1651558|dbj|BAA35952.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli str. K12 substr. W3110] gi|1787375|gb|AAC74214.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli str. K-12 substr. MG1655] gi|157066334|gb|ABV05589.1| DNA-binding response regulator PhoP [Escherichia coli HS] gi|169755405|gb|ACA78104.1| two component transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|169888616|gb|ACB02323.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli str. K-12 substr. DH10B] gi|188489273|gb|EDU64376.1| DNA-binding response regulator PhoP [Escherichia coli 53638] gi|238860868|gb|ACR62866.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia coli BW2952] gi|260449731|gb|ACX40153.1| two component transcriptional regulator, winged helix family [Escherichia coli DH1] gi|299877556|gb|EFI85767.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|300317575|gb|EFJ67359.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300401298|gb|EFJ84836.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300414893|gb|EFJ98203.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300451114|gb|EFK14734.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300838646|gb|EFK66406.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|301077130|gb|EFK91936.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|309701454|emb|CBJ00758.1| two-component response regulator [Escherichia coli ETEC H10407] gi|310336468|gb|EFQ01654.1| transcriptional regulatory protein phoP [Escherichia coli 1827-70] gi|315135762|dbj|BAJ42921.1| DNA-binding transcriptional regulator PhoP [Escherichia coli DH1] gi|315252615|gb|EFU32583.1| response regulator receiver domain protein [Escherichia coli MS 85-1] gi|315616012|gb|EFU96638.1| transcriptional regulatory protein phoP [Escherichia coli 3431] gi|323937870|gb|EGB34134.1| response regulator receiver domain-containing protein [Escherichia coli E1520] gi|323942600|gb|EGB38767.1| response regulator receiver domain-containing protein [Escherichia coli E482] gi|331038472|gb|EGI10692.1| transcriptional regulatory protein PhoP [Escherichia coli H736] Length = 223 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 75/147 (51%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P++ ++ S Q ++ +G DD V KP H E++AR+ A+ RR +++ P Sbjct: 73 LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 +V R+ + EV L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 133 QVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +LRKK++ + + + + R GY Sbjct: 192 VLMGRLRKKIQAQYPQEVITTVRGQGY 218 >gi|238028504|ref|YP_002912735.1| DNA-binding response regulator [Burkholderia glumae BGR1] gi|237877698|gb|ACR30031.1| DNA-binding response regulator [Burkholderia glumae BGR1] Length = 225 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 15/224 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +L++D ++ +G DG +++ E D+ ++ L + G +V Sbjct: 8 ILLVEDDRMIAEGVRKALKADGCAVDWVQDGEAALTALGGETYDLMLLDLGLPKRDGVEV 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R R H+ +P++ I+ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 68 LRTARA-RGHA-LPVLIITARDAVPDRVKGLDAGADDYLVKPFDLDELAARMRALIRR-- 123 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R+E+ G + + + G L RE +LE L+A G ++K+Q+ Sbjct: 124 -QAGRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 183 MYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 221 >gi|215487165|ref|YP_002329596.1| transcriptional regulatory protein YedW [Escherichia coli O127:H6 str. E2348/69] gi|312967163|ref|ZP_07781381.1| transcriptional activator protein irlR [Escherichia coli 2362-75] gi|215265237|emb|CAS09628.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli O127:H6 str. E2348/69] gi|312288627|gb|EFR16529.1| transcriptional activator protein irlR [Escherichia coli 2362-75] Length = 223 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 42 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 101 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 102 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNINITLTRKEFQLLWLLAS 161 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 162 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 >gi|50085985|ref|YP_047495.1| transcriptional regulator [Acinetobacter sp. ADP1] gi|49531961|emb|CAG69673.1| transcriptional regulator [Acinetobacter sp. ADP1] Length = 226 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 14/168 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR + VP++ IS L+ ++ + G DD + KP E+LAR+ A+ RR Sbjct: 61 MQVLKQIRQKTGVPVLIISARDQLENRVEGLNQGADDYLIKPYEFDELLARINALLRRTN 120 Query: 121 VSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S + + +V S+G QG+ L RE IL LM + K +K Sbjct: 121 -SKDASSLQQDQVLSNGEVILNVEKHIATFQGKEIELSNREWAILIPLMTHPNKIFSKAN 179 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +Y FD V N +E +I LR+KLG + + + R LGY + Sbjct: 180 LEDKLYD-FDSEVTSNTIEVYI----HHLRSKLGKNFIRTIRGLGYRL 222 >gi|332639095|ref|ZP_08417958.1| two component transcriptional regulator, winged helix family protein [Weissella cibaria KACC 11862] Length = 220 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 3/141 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 LP +I A QVP+I ++ + + G DD + KP H + ARV + RR Sbjct: 64 LPYVIDA--QVPVIFLTAKTEVDDVVQGLQLGADDYITKPFHLEVLKARVETVLRRTDGQ 121 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + V + + G+ L +E +L Y + N+G + + ++ A++ Sbjct: 122 TDEILHYGELTVNVPQQTVQRDGQTIDLTHKEFELLVYFIRNQGVNLTRDALYQALWDFA 181 Query: 182 DEAVEENVVESHISKLRKKLR 202 D+A + V+ H+ +LRKKL+ Sbjct: 182 DDANDTRTVDLHVQRLRKKLQ 202 >gi|308205569|gb|ADO19044.1| two component transcriptional regulator [Nostoc flagelliforme str. Sunitezuoqi] Length = 232 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 93/200 (46%), Gaps = 18/200 (9%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L ++GY DG S E Q+ + D+ ++ L GK LE+ + + Sbjct: 18 RLLTREGYTVDAAYDGTS--------GNEHAQTGSY-DLLILDWMLPGK--TGLEICQQL 66 Query: 68 RAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R + P++ ++ +L + D+G DD + KP RE+LARV A+ RR Sbjct: 67 RRQGKTTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRSGSQTYET 126 Query: 127 ETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 TG + V D E QG + L ++E ++L+Y M + G+ + QI ++ Sbjct: 127 TTGRLIVADLELDCENQVAYRQGRIIELSQKESQLLQYFMEHTGQLMTHAQIMENLWQ-E 185 Query: 182 DEAVEENVVESHISKLRKKL 201 +E NV+ + I LR+K+ Sbjct: 186 EEQPSSNVIAALIRLLRRKI 205 >gi|312884061|ref|ZP_07743775.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309368280|gb|EFP95818.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 218 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 6/150 (4%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GP 130 + P++ +S L + + G DD + KP E+LAR+ A+ RR S + T Sbjct: 72 KTPVLILSARDELNDRVYGLNHGADDYLVKPFQLEELLARMGALIRRSAGSADDIITVRD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + E L E +IL+YL+ N G+ ++KTQI ++G +DE+ N + Sbjct: 132 VSMSIHSHKVSIAEEEINLTPNEFKILQYLITNAGRVLSKTQILQNMHG-WDESAGLNSI 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E HI LRKK+ +++ R +GY I Sbjct: 191 EVHIHNLRKKMPKG----TIENIRGVGYII 216 >gi|299535466|ref|ZP_07048788.1| alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] gi|298729227|gb|EFI69780.1| alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] Length = 238 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 11/118 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLK---VSNNR-------AETGPIRVFSDGRDPEVQ 143 G DD + KP RE+LARV A+ RR V++++ E G +RV+ + + +Q Sbjct: 96 GADDYMTKPFSPREVLARVKAVLRRFTQNVVADDKDVAQEKMYEFGQLRVYPERFEVFLQ 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E +E +L YL+ N+ + + + Q+ SA++ +D A + +V+ HIS LR K+ Sbjct: 156 DEALEFTPKEFELLIYLLENKNRVLTRDQLLSAVWK-YDFAGDTRIVDVHISHLRDKI 212 >gi|296271218|ref|YP_003653850.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296094005|gb|ADG89957.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 229 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 6/169 (3%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 EW + +R D+ ++ L + +L R++ A VP++ ++ S + G Sbjct: 41 EWQANRSRPDLVLLDVML-PDIDGLLLAERLVHAIGPVPVVFVTARDSTADKVAGLARG- 98 Query: 96 DDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152 DD V KP E++AR+ A+ RR + R + + + R+ G L Sbjct: 99 DDYVTKPFRMEELIARIQAVLRRSRGWDAPRPRLTVADLELDEETREVWRAGRPIRLSPT 158 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E R+L Y M N+G+ ++K QI ++ +D + N+VES++S LR+K+ Sbjct: 159 EFRLLRYFMINQGRVLSKAQILDHVWN-YDFRGDANIVESYVSYLRRKI 206 >gi|190573011|ref|YP_001970856.1| putative phosphate regulon two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|254521224|ref|ZP_05133279.1| phosphate regulon transcriptional regulatory protein PhoB [Stenotrophomonas sp. SKA14] gi|190010933|emb|CAQ44542.1| putative phosphate regulon two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] gi|219718815|gb|EED37340.1| phosphate regulon transcriptional regulatory protein PhoB [Stenotrophomonas sp. SKA14] Length = 229 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 6/167 (3%) Query: 57 GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G L+L R R + +VP+I ++ + ++GVDD V KP RE+LAR+ Sbjct: 58 GTSGLDLARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIR 117 Query: 114 AIYRRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A+ RR + + GPIR+ + P+ E R+L + M + + + Sbjct: 118 AVMRRAREDDEDGSVAVGPIRIDGAAHRVFANDQPVPIGPTEYRLLHFFMTHPERVYTRA 177 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 Q+ ++G VEE ++ HI +LRK L + V + R GY Sbjct: 178 QLLDHVWG-GSVYVEERTIDVHIRRLRKTLEPFNAENMVQTVRGAGY 223 >gi|168213412|ref|ZP_02639037.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170715032|gb|EDT27214.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 228 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 4/145 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 +E+ + IR S VP+I ++ + + G DD V KP +E+LARV A+ RR Sbjct: 65 MEVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124 Query: 120 -KVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +N P + + ++ GE P +E +L YL +N+ K + Q+ + Sbjct: 125 GEEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202 +G +D + V+ HI +LR+KL Sbjct: 185 WG-YDYPGDSRTVDVHIKRLREKLN 208 >gi|89091823|ref|ZP_01164778.1| Transcriptional regulatory protein CpxR [Oceanospirillum sp. MED92] gi|89083558|gb|EAR62775.1| Transcriptional regulatory protein CpxR [Oceanospirillum sp. MED92] Length = 235 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 11/200 (5%) Query: 28 GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTT 87 N+ E E L+ S R + ++ + G+ LEL + IR Q+P+I ++ Sbjct: 33 AHNADEACEQLKRSERFALMILDVMMPGRTG--LELLQQIRPKVQIPVIMLTGRGEDIDR 90 Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-------VSNNRAETGPIRVFSDGRDP 140 + + G DD ++KP + RE+LAR+ A+ RR + ++ E + + R+ Sbjct: 91 ILGLEMGADDYLSKPCNPRELLARIRAVLRRAEPQQRTTLFPDSLVEHAGVTLDPGLREV 150 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 + GE+ L E +L YL+AN G + K Q+ + A + ++ H+S++R+K Sbjct: 151 RINGELLELTGTEFNVLAYLIANAGSVLEKEQLTELVLH-RKLAAYDRAIDVHVSRVRQK 209 Query: 201 LRNKLG-FDPVDSKRFLGYS 219 L L + + + R +GY Sbjct: 210 LAKHLSDAELIKTIRGVGYQ 229 >gi|114321652|ref|YP_743335.1| two component transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114228046|gb|ABI57845.1| two component transcriptional regulator, winged helix family [Alkalilimnicola ehrlichii MLHE-1] Length = 226 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 21/171 (12%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LEL R +RA + +P++ ++ Q + ++G DD + KP E+LARV A+ RR Sbjct: 60 LELIRALRADGRTLPVLVLTARGHWQDRVTGLEAGADDYLVKPFEMPELLARVQALLRRA 119 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L+ +T + DG E+ G F R+L Y+M ++G ++KT Sbjct: 120 GGWADPVLRCPPLALDTRSQTAWRDGARIELTGSEF-------RLLHYMMLHQGAVLSKT 172 Query: 172 QIFSAIYGLFDEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +Y +A E NV+E I +LR+KL P+++ R GY + Sbjct: 173 RLEEHLY---PDAAEHDSNVMEVFIRRLRRKLDPDGTLQPIETLRGRGYRL 220 >gi|309776825|ref|ZP_07671799.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308915573|gb|EFP61339.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 224 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 3/160 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120 + R +R S +P+I ++ S L + G DD V KP + + +LAR+A + +R Sbjct: 63 ICREVRKSSDMPIIIVTSRDSDMDELISMNLGADDFVTKPYNLQILLARIARVLQRTYEH 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S+N I + +G L + E RI+ L N+ K V++ ++ ++ Sbjct: 123 ASSNILTIHDIALDISKSTLTWKGNSIDLTKNELRIMHCLFQNKNKIVSRNELMQHMWDC 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V++N + +I++LRKKL D + +KR +GY I Sbjct: 183 -DLFVDDNTLTVNINRLRKKLEYLRLDDLIQTKRGMGYII 221 >gi|326792918|ref|YP_004310739.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543682|gb|ADZ85541.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 232 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 97/207 (46%), Gaps = 10/207 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V DD+ +V + L + +L+ +N +E L++ +++V I ++ Sbjct: 5 VLVCDDDKLIVNSIVLHLQKEGYRTLKAYNGVEA---LEAIEKQEVHLILMDIMMPQLDG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 L IR +P+I +S + + G DD + KP + E+LARV + RR Sbjct: 62 LSATLKIRQEKNIPIIILSAKSEDTDKIAGLNLGADDYITKPFNTFELLARVRSQLRRYT 121 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + TG + + + V GE+ L E +IL+YLM N G+ ++ QI+ Sbjct: 122 KLGAMQQTPQLLMTGGLCMDTGANTVYVDGELVRLTPTEYKILQYLMINMGQVLSMHQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++ A EN V HI +LR+K+ Sbjct: 182 ENVWHDTPFA-PENTVAVHIRRLREKI 207 >gi|238797369|ref|ZP_04640869.1| Transcriptional regulatory protein qseB [Yersinia mollaretii ATCC 43969] gi|238718800|gb|EEQ10616.1| Transcriptional regulatory protein qseB [Yersinia mollaretii ATCC 43969] Length = 220 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 94/202 (46%), Gaps = 7/202 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D L+ DG A G S++ F + ++ L + A A+ L G L Sbjct: 3 ILLIEDDKLIGDGIKAGLIKMGFSVDWFT--DGQQGLSALASAPYDAVVLDLSLPGMDGL 60 Query: 62 ELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRR 118 ++ R R H + P++ ++ +LQ + G DD + KP E++AR+ A I RR Sbjct: 61 DILRTWRRNGHDE-PVLILTARDALQERVAGLQQGADDYLCKPFALIEVVARLQALIRRR 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G I + QGE L +E +LE L+ N G+ + ++ I IY Sbjct: 120 YGQAQTVLTHGSISLDPINLSVTHQGEPLYLKPKEFALLELLLRNEGRVLPRSLIEEKIY 179 Query: 179 GLFDEAVEENVVESHISKLRKK 200 +D+ V N +E HI LRKK Sbjct: 180 N-WDDEVSSNAIEVHIHHLRKK 200 >gi|332662904|ref|YP_004445692.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332331718|gb|AEE48819.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 224 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 7/133 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---G 129 +P++ ++ S + + D+G DD + KP E+ ARV A+ RR SN A+ Sbjct: 74 IPILMLTALGSTEDIVKGLDNGADDYMVKPFRIPELQARVRALLRR-SASNTTAQISRLA 132 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 + + D ++ E L E R+LEYLM+++G+ A+ +I ++G+ FD N Sbjct: 133 DLVLNHDTKEVSRNNESIKLTATEFRLLEYLMSHKGRLKARMEILEEVWGINFDPGT--N 190 Query: 189 VVESHISKLRKKL 201 VV+ ++S LR K+ Sbjct: 191 VVDVYVSYLRNKI 203 >gi|326389795|ref|ZP_08211359.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325994063|gb|EGD52491.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 230 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/207 (25%), Positives = 97/207 (46%), Gaps = 16/207 (7%) Query: 29 FNSLEFEE--WLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPL 75 F LEFE + + + +S ++ L G + VL E+ + IR HS +P+ Sbjct: 18 FLQLEFEHEGYTVTVTYDGLSGLKEALEGDYDLVLLDIMLPGIDGFEVLKKIREHSDIPV 77 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS 135 I ++ ++ ++ D G DD V KP E+ ARV A R+ K + + Sbjct: 78 IMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRKKKPHLKKDVLRYSDITM 137 Query: 136 DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D EV+ G L ++E +LE+L+ N + + +I ++G +D + N+V+ + Sbjct: 138 DLTTHEVRRAGIKIELTKKEFDLLEFLIKNANIALTREKILECVWG-YDYYGDTNIVDVY 196 Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I LR K+ + + + R +GY++ Sbjct: 197 IRYLRSKIDDPFDRKLIHTIRGVGYTL 223 >gi|299134022|ref|ZP_07027215.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298590769|gb|EFI50971.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 234 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +RA Q+P+I ++ + +G DD + KP E+LARV + R Sbjct: 62 IELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121 Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R N G I + + R G L E R+LE+ + + G+ ++ Q+ Sbjct: 122 RASPERLANVLVYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLQHPGRVFSREQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 182 GVWG-RDIYIDERTVDVHIGRLRKLLNPGEEQDPIRTVRGAGYALD 226 >gi|256826788|ref|YP_003150747.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256582931|gb|ACU94065.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 271 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 99/225 (44%), Gaps = 16/225 (7%) Query: 12 KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSA-IEAFLIGKGEKVL---ELP--- 64 K+ I + DD E +L ED SA +E+ L +L LP Sbjct: 4 KENNIYIVEDDRTMRENLRTLLEHNGYIVQVLEDFSAPVESILAASANLILLDLNLPHAD 63 Query: 65 -----RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 R IR S +P+I ++ S L + G DD + KP + + +LA VA++ +R Sbjct: 64 GRFICREIRRESNIPIIVVTGDDSDLDELICLNFGADDFIAKPYNPQVLLAHVASVLKRT 123 Query: 120 KVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S G + + ++ G+ L + E RIL LM N GK V + +I Sbjct: 124 ASSVATPAHHTVGGVSLDAECCRVSFAGKQADLTKNELRILSLLMRNAGKIVPRERIQEE 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ DE +++N + ++S LR L D + +KR +GYS + Sbjct: 184 LWN-SDEFIDDNTLTVNVSHLRHTLSTIGADDFIRTKRGIGYSFE 227 >gi|255036521|ref|YP_003087142.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254949277|gb|ACT93977.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 225 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 7/145 (4%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L + +RA P++ ++ ++ LD F++G DD + KP RE++AR+ + +R Sbjct: 61 DLAKQLRADGLTTPILFLTALGTIDDKLDGFEAGGDDYLVKPFEFRELIARIKVLSQRNS 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQ---GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V ++ + D +V G L +E +LEYLM NRG+ V++ I + Sbjct: 121 VREQSSQVLTLADLELNLDEKVARRGGNRIDLTAKEFALLEYLMRNRGRVVSRVDIAEQV 180 Query: 178 YGL-FDEAVEENVVESHISKLRKKL 201 + + FD NV++ +I+ LRKK+ Sbjct: 181 WDIRFDTGT--NVIDVYINFLRKKV 203 >gi|226312547|ref|YP_002772441.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095495|dbj|BAH43937.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 224 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 3/139 (2%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY--RRLKVS 122 R IR S VP++ ++ TL F+ G DD V KP +LAR + R++ Sbjct: 66 RRIRKVSNVPILMLTARSDEDDTLLGFELGADDYVVKPCSPPILLARSKRLLENRQMHEP 125 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + G I + R ++G+ + L E IL YLM N+G +++ Q+ I+G +D Sbjct: 126 GDMLSGGGITIHLPSRTVSIEGKNYSLTHTEYEILAYLMKNKGIILSREQLIIKIWG-YD 184 Query: 183 EAVEENVVESHISKLRKKL 201 E+ + SH+ LR KL Sbjct: 185 FIGEDRTLSSHVRNLRSKL 203 >gi|199597535|ref|ZP_03210964.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|199591558|gb|EDY99635.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] Length = 225 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 11/158 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE VL IR SQVP++ ++ T+ G +D + KP E+LAR+ Sbjct: 60 GESVLT---TIRKTSQVPVLVLTAIQEKAKTVALLQQGANDYLTKPFDIDELLARIQVQL 116 Query: 117 RRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R++ +N++ + G I++ V + LP++E +L +M + + K+Q Sbjct: 117 RQVSGQPITTNDQLKVGEIQLDPKRHVVTVNQQTLTLPKKEYDMLALMMRDPHQVFDKSQ 176 Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDP 209 ++ ++G F A +N + HIS LR K+ N+L DP Sbjct: 177 LYEHVWGEPFLNA--DNTLNVHISNLRTKI-NELAHDP 211 >gi|168205748|ref|ZP_02631753.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168209726|ref|ZP_02635351.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|169343283|ref|ZP_02864293.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|182624276|ref|ZP_02952061.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|169298581|gb|EDS80662.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|170662683|gb|EDT15366.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170712050|gb|EDT24232.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|177910494|gb|EDT72867.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 228 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 4/145 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 +E+ + IR S VP+I ++ + + G DD V KP +E+LARV A+ RR Sbjct: 65 MEVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124 Query: 120 -KVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +N P + + ++ GE P +E +L YL +N+ K + Q+ + Sbjct: 125 GEEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202 +G +D + V+ HI +LR+KL Sbjct: 185 WG-YDYPGDSRTVDVHIKRLREKLN 208 >gi|163815933|ref|ZP_02207303.1| hypothetical protein COPEUT_02113 [Coprococcus eutactus ATCC 27759] gi|158448743|gb|EDP25738.1| hypothetical protein COPEUT_02113 [Coprococcus eutactus ATCC 27759] Length = 228 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 8/157 (5%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G+G L+ R +R ++VP+I ++ + ++ F +G DD + KP + R+ A Sbjct: 57 GRG---LDYCRELRKSTKVPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEA 113 Query: 115 IYRRLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + RR + V R G + V + + E L E RILE L+ N+G+ + Sbjct: 114 VLRRSENAPDGVKRERFHYGDMSVDFERMQVYISDEPIKLSVTEYRILELLIKNKGRVLT 173 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 + I I+ + V+EN + HI +LR+K+ G Sbjct: 174 RDMIIQKIWDDNENYVDENTLNVHIRRLRQKIEKDAG 210 >gi|194364602|ref|YP_002027212.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347406|gb|ACF50529.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 229 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 6/167 (3%) Query: 57 GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G L+L R R + +VP+I ++ + ++GVDD V KP RE+LAR+ Sbjct: 58 GTSGLDLARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIR 117 Query: 114 AIYRRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A+ RR + + GPIR+ + P+ E R+L + M + + + Sbjct: 118 AVMRRAREDDEDGSVAVGPIRIDGAAHRVFANDQPVPIGPTEYRLLHFFMTHPERVYTRA 177 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 Q+ ++G VEE ++ HI +LRK L + V + R GY Sbjct: 178 QLLDHVWG-GSVYVEERTIDVHIRRLRKTLEPFNAENMVQTVRGAGY 223 >gi|268680083|ref|YP_003304514.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946] gi|268618114|gb|ACZ12479.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946] Length = 233 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 3/139 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S+ P+I +S + + D G DD V KP E+LARV + RR++ + R Sbjct: 67 VRKQSKTPIIVLSARNDEKEIIAALDLGADDYVTKPFSTSELLARVRSTLRRVQATTARD 126 Query: 127 ETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + D EVQ G + L E +L YLM N K + QI ++G+ + Sbjct: 127 MLTCKDLTIDFTKKEVQLKGALLKLTPTEYTLLRYLMQNANKVLPHQQILKEVWGVGYQN 186 Query: 185 VEENVVESHISKLRKKLRN 203 E + ++I+ LRKK+ + Sbjct: 187 -EMQYLRTYINSLRKKIED 204 >gi|138895736|ref|YP_001126189.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196248616|ref|ZP_03147316.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267249|gb|ABO67444.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196211492|gb|EDY06251.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 224 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 11/147 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IRA P+I I+ S+ + D+G DD + KP E+LAR+ A++RR+ Sbjct: 62 MEVCRRIRAAKSTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVH 121 Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G + F D R + L +RE +L M N + + + Sbjct: 122 PESG----GQVLTFKDLVVDMQARTVKKGNAFIELTKREYDLLVAFMQNINVVLTRDLLL 177 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++G FD VE NVV+ ++ LR+KL Sbjct: 178 EKVWG-FDTEVETNVVDVYVRYLRQKL 203 >gi|150018187|ref|YP_001310441.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904652|gb|ABR35485.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 218 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 2/140 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + I++ + VP+I ++ L + SG +D + KP E+LAR+ + RR Sbjct: 63 ELMKRIKSLN-VPVIFLTAKNGLADKITGLKSGAEDYIVKPFETVELLARIEIVLRRYSK 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +NN E ++++ D R + E L +E ++ L+ N+ +++ + I+G + Sbjct: 122 NNNCIEFKRLKIYEDERIIKNGDETIDLTLKEFELILLLVKNKNMALSREYLLEKIWG-Y 180 Query: 182 DEAVEENVVESHISKLRKKL 201 + E +++HI K+RKKL Sbjct: 181 EYMGETRTIDTHIQKIRKKL 200 >gi|309800488|ref|ZP_07694642.1| DNA-binding response regulator [Streptococcus infantis SK1302] gi|308115883|gb|EFO53405.1| DNA-binding response regulator [Streptococcus infantis SK1302] Length = 214 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 11/153 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP+I +S S + + G DD V KP +RE+ ARV A+ RR + Sbjct: 41 LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTE 100 Query: 121 VS---NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 ++ N ET G + + D + GE L RE +L +L ++ G+ + + Sbjct: 101 LASADNQEPETKLQSLQIGDLEILPDAYVAKKYGEELDLTHREFELLHHLASHIGQVITR 160 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ I +LR+K+ + Sbjct: 161 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 192 >gi|296454605|ref|YP_003661748.1| winged helix family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296184036|gb|ADH00918.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. longum JDM301] Length = 258 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 20/172 (11%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI + P++ ++ Q + G DD V KP E++AR+ AI RR + Sbjct: 86 RIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TRE 142 Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E PI + D D G+ L E ++L YLM N G+ ++K QI ++ Sbjct: 143 QVEDDPIIRVADLEINEDSHDVTRAGQPVDLSPTEYKLLRYLMDNEGRVLSKAQILDHVW 202 Query: 179 GLFDEAVEENVVESHISKLRKKLR---------NKLGFDP-VDSKRFLGYSI 220 +D + +VES+IS LRKK+ K P +++KR +GY I Sbjct: 203 Q-YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMI 253 >gi|257469148|ref|ZP_05633242.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] gi|317063395|ref|ZP_07927880.1| two-component system response regulator [Fusobacterium ulcerans ATCC 49185] gi|313689071|gb|EFS25906.1| two-component system response regulator [Fusobacterium ulcerans ATCC 49185] Length = 220 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 7/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R I+ +S VP+I I+ + + F+ G DD + KP ++ LARV + + + Sbjct: 63 ICREIKEYSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTVLKNKTIV 122 Query: 123 N--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N N E G +++ +G+ L +E IL Y + N+ +++ ++ + I+G Sbjct: 123 NNSNEIEVGKLKINDVSHSVSKEGKNLDLAPKEYEILMYFIKNKNIALSREKMLTEIWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + ++ HI LRK K+G + + + R +GY + Sbjct: 182 YGFVGNDRTIDVHIKNLRK----KIGGEYIKTIRSVGYKFE 218 >gi|253581579|ref|ZP_04858804.1| two component transcriptional regulator [Fusobacterium varium ATCC 27725] gi|251836649|gb|EES65184.1| two component transcriptional regulator [Fusobacterium varium ATCC 27725] Length = 220 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 106/217 (48%), Gaps = 25/217 (11%) Query: 10 LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRII 67 L+K+GY +DG V+++ F F D+ ++ L K G VL R I Sbjct: 21 LLKEGYDVTEAEDGEVAIKLFYEKPF----------DLVILDIMLPKKDGWSVL---REI 67 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-- 125 + +S VP++ +S + L F+ G D+ + KP +++ +LAR+ + + SNN Sbjct: 68 KKYSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKTLIKN--TSNNTDH 125 Query: 126 -AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E G I + V+G+ L +E +L YL+ N +++ ++ + ++G +D Sbjct: 126 IIELGKITINDTSHTVTVEGKEVILAPKEYELLIYLIKNHKIALSRDKMLTEVWG-YDFP 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +++HI LRK KLG + + + R +GY + Sbjct: 185 GSDRTIDTHIKNLRK----KLGDECIKTVRGIGYKFE 217 >gi|229119669|ref|ZP_04248936.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228663784|gb|EEL19358.1| DNA-binding response regulator [Bacillus cereus Rock1-3] Length = 225 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 5/163 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R IR P+I +++ S + + +G DD + KP E++ARV AI RR Sbjct: 62 EICRQIRLVKTTPIIIVTNNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDC 121 Query: 121 VSNNRAETGPIR-VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + N + +F D V+ GE L +RE +L +L+ N+ K + + + + Sbjct: 122 IQQNETNFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLLFLIKNKNKILHREMLLDQV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + V NVV+ +I +RKKL+ + + + GYS+ Sbjct: 182 WG-YKVVVSPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 223 >gi|329116649|ref|ZP_08245366.1| response regulator ArlR [Streptococcus parauberis NCFD 2020] gi|326907054|gb|EGE53968.1| response regulator ArlR [Streptococcus parauberis NCFD 2020] Length = 228 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 98/221 (44%), Gaps = 19/221 (8%) Query: 18 LFGDDGVSLEGFNSLEFE-------------EWLQSSAREDVSAIEAFLIGKGEKVLELP 64 L +D +L F SLE + E L+++ +D I L+ E+ Sbjct: 6 LIVEDEKNLARFVSLELQHEGYEVSVEVNGREGLETALEKDFDLILLDLMLPEMDGFEVT 65 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123 R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 66 RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIETE 125 Query: 124 ----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N+ + + R E L +RE +L LM N + + + ++ S+++ Sbjct: 126 KKAPNQGVYRDLVLNPQNRSVNRGDEEISLTKREYDLLNILMTNMNRVMTREELLSSVWK 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 186 -YDEAVETNVVDVYIRYLRGKIDMPGRESYIQTVRGMGYVI 225 >gi|319938402|ref|ZP_08012797.1| signal transduction regulator [Coprobacillus sp. 29_1] gi|319806490|gb|EFW03154.1| signal transduction regulator [Coprobacillus sp. 29_1] Length = 228 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 86/171 (50%), Gaps = 2/171 (1%) Query: 48 AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE 107 AI ++ + + + + +I ++Q+P++ +S S + DSG DD + KP E Sbjct: 50 AIFDVMLPQMDGITAVKKIRETNTQMPILILSAKDSEIDKIHGLDSGSDDYMTKPFGVLE 109 Query: 108 ILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 + ARV + RR++ + +T + + + + L +E ++L YL+ N+ + Sbjct: 110 LCARVRTLLRRVQPKSKSIQTPTLSIDKSTHIVQQNNQGIDLTHKEYQLLLYLIENKERV 169 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V + ++ + I+G +D E ++ HI LRKKL + G + + R +GY Sbjct: 170 VERDELLNNIWG-YDFIGESRALDVHIRSLRKKLDDN-GEKYIKTVRSVGY 218 >gi|288960589|ref|YP_003450929.1| DNA-binding two-component response regulator [Azospirillum sp. B510] gi|288912897|dbj|BAI74385.1| DNA-binding two-component response regulator [Azospirillum sp. B510] Length = 224 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 90/193 (46%), Gaps = 12/193 (6%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K GY + DG E L EE+ + ++ L G + L L ++ R Sbjct: 20 LRKHGYAIDWAADGYQAEEL--LAGEEY-------QLVILDLMLPGPDGQTL-LRQLRRK 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128 Q P++ ++ + T +D D G DD V KP RE+ AR A+ RR ++ + Sbjct: 70 GDQTPVLVVTARSRVDTKVDALDLGADDYVVKPFDFRELEARCRALLRRHHGIATSEQVF 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + + V+ + L RE R+LE ++N + + K + + L D+ V N Sbjct: 130 GNLVFDTATKKVTVEAQAVDLSAREFRLLELFLSNLKRVMTKDTLIDRLCSL-DQPVAPN 188 Query: 189 VVESHISKLRKKL 201 +E ++S+LR+KL Sbjct: 189 AIELYVSRLRRKL 201 >gi|226949419|ref|YP_002804510.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226843232|gb|ACO85898.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 223 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 94/192 (48%), Gaps = 8/192 (4%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFF 91 +EF +Q +E+ S I + + R IR S VP+I ++ S L Sbjct: 32 IEFNNIIQYVEKENASLILLDINLPEFDGYYICREIRKTSDVPIIIVTSRDSEVDELISM 91 Query: 92 DSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSDGRDPEVQGEVF 147 + G DD V KP + +LAR+ I +R LK +NN + + + Sbjct: 92 NLGADDFVTKPYNTEILLARITNILKRTYGNLK-TNNTLNYKDFNLNLSNATLIYKDKSL 150 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L + E +IL YL+ NRG V + + ++ D V+++ + +I++LRKKL+ ++G Sbjct: 151 ELTKNEVKILSYLINNRGNIVKRDSLMEYLWK-SDYFVDDSTLTVNINRLRKKLQ-EIGI 208 Query: 208 -DPVDSKRFLGY 218 +P++++R LGY Sbjct: 209 ENPIETRRGLGY 220 >gi|289207427|ref|YP_003459493.1| transcriptional regulator [Thioalkalivibrio sp. K90mix] gi|288943058|gb|ADC70757.1| two component transcriptional regulator, winged helix family [Thioalkalivibrio sp. K90mix] Length = 238 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 93/184 (50%), Gaps = 5/184 (2%) Query: 37 WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 +L + D++ ++ L G G V+ R ++ Q+P++ ++ Q ++ ++G Sbjct: 40 YLLTEYHCDIAVVDLGLPGMDGLDVIRKAREVKP--QLPILILTARDRWQDKVEGLEAGA 97 Query: 96 DDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154 DD + KP H +E++AR+ A+ RR L+ + + GP+ + + D + E L E Sbjct: 98 DDYLTKPFHIQELVARLRALARRSLQAGREQLQFGPLVIDTATDDVRLNDEPVSLTTFEY 157 Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214 R+L L+ G+ ++K + +Y DE E NV+E I +LR+KL +++ R Sbjct: 158 RLLLTLVRQPGRVLSKEVLADYLYE-HDEDRESNVIEVLIGRLRRKLDPGGSLGLIETLR 216 Query: 215 FLGY 218 GY Sbjct: 217 GRGY 220 >gi|71279444|ref|YP_268131.1| transcriptional regulatory protein PhoP [Colwellia psychrerythraea 34H] gi|71145184|gb|AAZ25657.1| transcriptional regulatory protein PhoP [Colwellia psychrerythraea 34H] Length = 224 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 8/151 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----G 129 P++ ++ Q + D+G DD + KP H E+ +R+ A+ RR S +A T G Sbjct: 74 PILILTARDRWQDKVSGLDAGADDYLTKPFHVEELTSRLNALIRR---SAGKASTMINNG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P + V+ L E ++ +YLM + G+ ++KT + IY D ++ NV Sbjct: 131 PYSLDIATSQVLVEQVSVSLSAHEFKVFKYLMLHVGEVISKTTLTEHIYDQ-DFDLDSNV 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E I +LRKKL ++ +++KR GY + Sbjct: 190 IEVFIRRLRKKLDPDSKYNFIETKRGQGYRL 220 >gi|154243824|ref|YP_001409397.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154162946|gb|ABS70161.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 220 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 8/167 (4%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G+G L R A + P++ ++ + + D+G DD + KP E+ AR+ A Sbjct: 54 GRGSDFLRTLR--SAGAATPVMVLTARDQISDRIAALDAGADDYLVKPFDLCELSARIRA 111 Query: 115 IYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR + N T G I V R G+ L RE + E + + ++K Q+ Sbjct: 112 VGRRYAGNPNPLVTLGNIEVDLAARSVRRAGQAVALTAREWALFEAFVQRPHQLMSKPQL 171 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y FD VE N +E ++++LRK KLG D +++ R +GY + Sbjct: 172 EERLYS-FDAEVESNAIEVYVARLRK----KLGADVIETVRGMGYRL 213 >gi|332766713|gb|EGJ96917.1| response regulator [Shigella flexneri 2930-71] gi|333017489|gb|EGK36802.1| transcriptional activator protein irlR [Shigella flexneri K-227] Length = 253 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 42 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 101 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +++ S + L R+E ++L L + Sbjct: 102 FSFSELLARVRAQLRQHHALNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLAS 161 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 162 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 >gi|313900383|ref|ZP_07833877.1| putative response regulator protein GraR [Clostridium sp. HGF2] gi|312954932|gb|EFR36606.1| putative response regulator protein GraR [Clostridium sp. HGF2] Length = 224 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 3/160 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120 + R +R S +P+I ++ S L + G DD V KP + + +LAR+A + +R Sbjct: 63 ICREVRKSSDMPIIIVTSRDSDMDELISMNLGADDFVTKPYNLQILLARIARVLQRTYEH 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S+N I + +G L + E RI+ L N+ K V++ ++ ++ Sbjct: 123 ASSNILTIHDIALDISKSTLTWKGNSIDLTKNELRIMHCLFQNKNKIVSRNELMQHMWDC 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V++N + +I++LRKKL D + +KR +GY I Sbjct: 183 -DLFVDDNTLTVNINRLRKKLEYLRLDDLIQTKRGMGYII 221 >gi|269975939|ref|ZP_06182943.1| response regulator MprA [Mobiluncus mulieris 28-1] gi|307700377|ref|ZP_07637416.1| putative response regulator MprA [Mobiluncus mulieris FB024-16] gi|269935767|gb|EEZ92297.1| response regulator MprA [Mobiluncus mulieris 28-1] gi|307614362|gb|EFN93592.1| putative response regulator MprA [Mobiluncus mulieris FB024-16] Length = 255 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 8/134 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P++ ++ ++ ++ +G DD V KP E++AR+ AI RR K + +E +R Sbjct: 96 MPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTK--HGSSEQPLLR 153 Query: 133 VFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 V D + G++ L E ++L YLM N G+ V+K+QI ++ +D + Sbjct: 154 VADLELDDNLYEVHRNGKLIDLSPTEFKLLRYLMVNEGRVVSKSQILDHVWE-YDWEGDA 212 Query: 188 NVVESHISKLRKKL 201 +VES+IS LR+KL Sbjct: 213 AIVESYISYLRRKL 226 >gi|257792595|ref|YP_003183201.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|317488883|ref|ZP_07947413.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325832718|ref|ZP_08165481.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1] gi|257476492|gb|ACV56812.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|316911957|gb|EFV33536.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325485857|gb|EGC88318.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1] Length = 231 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 9/164 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 EL R +R+ + VP++ +S + + + G DD + KP RE++ARV A+ RR Sbjct: 66 ELCRRLRSKTTVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGSG 125 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +N+ I + D L RE +L LM N GK V++ + Sbjct: 126 GDFPGANHAVTASGITLDEDAHTASGANGEIDLTPREFELLASLMKNAGKVVSREDLLRD 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218 +G ++ E V++HI +LR K+ + G+DP V++ R GY Sbjct: 186 AWG-WEYLTETKTVDTHIKRLRDKIESA-GYDPGLVETVRGYGY 227 >gi|168217605|ref|ZP_02643230.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182380315|gb|EDT77794.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 228 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 4/145 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 +E+ + IR S VP+I ++ + + G DD V KP +E+LARV A+ RR Sbjct: 65 MEVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124 Query: 120 -KVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +N P + + ++ GE P +E +L YL +N+ K + Q+ + Sbjct: 125 GEEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202 +G +D + V+ HI +LR+KL Sbjct: 185 WG-YDYPGDSRTVDVHIKRLREKLN 208 >gi|172061017|ref|YP_001808669.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171993534|gb|ACB64453.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 224 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 10/186 (5%) Query: 41 SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 SA D ++ L G G +L R + + P++ +S + + +G DD + Sbjct: 42 SASYDAITLDRMLPGADGLAILTAMRTVGIDT--PVLMLSALGDVDERIRGLRAGGDDYL 99 Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERR 155 KP E+ AR+ + RR + S +T GP+ + R + PL E R Sbjct: 100 TKPFDSGELSARIEVLLRRRQASGVPQQTLLTVGPLELDLISRCARRGVDEIPLLPTEFR 159 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214 +LE++M N G+ + +T +F A++G FD N+++ H+ +LRKK+ + + R Sbjct: 160 VLEFMMRNAGQTITRTMLFEAVWGYHFDPGT--NLIDVHMGRLRKKIDPPGAVPIIQTVR 217 Query: 215 FLGYSI 220 GY + Sbjct: 218 GSGYML 223 >gi|293191860|ref|ZP_06609321.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus F0309] gi|292820443|gb|EFF79428.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus F0309] Length = 236 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 17/188 (9%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHS-QVPLIG 77 +L E W ++A++ + A+ + V+ ++PR+ +RA ++P++ Sbjct: 28 QALRHEGWETATAKDGLDALAKATSFHPDVVILDVQMPRMDGLETLERLRARDPELPVLF 87 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRV 133 ++ ++ + +G DD V KP E+ ARV + RR + A T + + Sbjct: 88 LTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRRAGRTQQAASTVLQVADLTL 147 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D D GE L E +L YLM N G ++K +I A++ +D + NVVE + Sbjct: 148 DMDSHDVRRGGEEITLTNTEFELLRYLMENAGIVLSKQKILDAVWS-YDFGGQVNVVELY 206 Query: 194 ISKLRKKL 201 IS LRKK+ Sbjct: 207 ISYLRKKI 214 >gi|255102347|ref|ZP_05331324.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255308246|ref|ZP_05352417.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 223 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 20/195 (10%) Query: 12 KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIE---AFLIGKGEKVLELPRIIR 68 K GY + DDGV E L+ S D+ ++ +L G + R+ R Sbjct: 23 KGGYTCITADDGV--EALTILK-------SNNIDLMILDIMMPYLDG-----FSVCRVSR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRA 126 + +P+I ++ + L ++ G DD + KP + +LA+V A+ RR + N Sbjct: 69 EMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTTDIPKNSL 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G I + R V+ ++ L +E +L M N + ++ ++ + I+G +D Sbjct: 129 SLGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG-YDFEGN 187 Query: 187 ENVVESHISKLRKKL 201 V++HI LRKKL Sbjct: 188 TRTVDTHIKTLRKKL 202 >gi|126700822|ref|YP_001089719.1| two-component response regulator [Clostridium difficile 630] gi|115252259|emb|CAJ70100.1| Two-component response regulator [Clostridium difficile] Length = 223 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 20/195 (10%) Query: 12 KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIE---AFLIGKGEKVLELPRIIR 68 K GY + DDGV E L+ S D+ ++ +L G + R+ R Sbjct: 23 KGGYTCITADDGV--EALTILK-------SNNIDLMILDIMMPYLDG-----FSVCRVSR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRA 126 + +P+I ++ + L ++ G DD + KP + +LA+V A+ RR + N Sbjct: 69 EMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTTDIPKNSL 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G I + R V+ ++ L +E +L M N + ++ ++ + I+G +D Sbjct: 129 SLGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG-YDFEGN 187 Query: 187 ENVVESHISKLRKKL 201 V++HI LRKKL Sbjct: 188 TRTVDTHIKTLRKKL 202 >gi|72161642|ref|YP_289299.1| response regulator receiver [Thermobifida fusca YX] gi|71915374|gb|AAZ55276.1| response regulator receiver [Thermobifida fusca YX] Length = 218 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 78/163 (47%), Gaps = 13/163 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125 IR+ S VP+I S + + + G DD V KP E+ ARV A+ RR +V+ R Sbjct: 53 IRSRSSVPIIFHSVKATERDRVLGLKLGADDYVVKPCGTWELAARVEAVLRRARVAEVRI 112 Query: 126 --------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 A GP+RV + R EV G PL +E +L L+ G V++ +I + Sbjct: 113 PRQDRGGVAVVGPLRVDLNQRQVEVGGRKVPLTYKEFELLRVLIERPGHVVSRAEIMHKV 172 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G E+ + + H+ LR+KL +++ R +GY I Sbjct: 173 WGYTPES-DTRTLGVHMVSLRRKLALP---SLIETVRGVGYRI 211 >gi|304398000|ref|ZP_07379875.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|304354286|gb|EFM18658.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] Length = 223 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 17/208 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLE-------GFNSLEFEEWLQSSAREDVSAIEAFLI 54 +LI+D L+ DG A G S++ GFN+LE W + D+S E Sbjct: 3 ILLIEDDRLIGDGIKAGLSKLGFSVDWFMSGESGFNALEAAPW--DAVILDLSLPER--- 57 Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G +L R + + VP++ ++ +L + G DD + KP E+ AR+ A Sbjct: 58 -DGLDILREWR--QQGNDVPVLILTARDALDQRVKGLQLGADDYLCKPFALTEVAARLQA 114 Query: 115 IYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR G + + +GE L RE +LE M N + + ++Q+ Sbjct: 115 LIRRRHGQLQPELRHGNVVLIPGSHSVMREGETIALKSRELALLELFMRNPSRVLTRSQL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 +Y +D V N VE HI LRKKL Sbjct: 175 EEKLYS-WDADVSSNAVEVHIHHLRKKL 201 >gi|291537171|emb|CBL10283.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 271 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 17/169 (10%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S +P+I +S + + G DD V KP + E++ARV + RR N A Sbjct: 108 IREESSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRRYTQLGNAA 167 Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E G + + D ++ V GEV L E IL L+ N+GK + QI+ +I+ Sbjct: 168 ENSASVYTVGGLSINDDLKEVTVDGEVVKLTPIEYNILLLLVKNQGKVFSINQIYESIWN 227 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSIDWN 223 D +N V HI +R+K+ +P + + +GY ID N Sbjct: 228 -EDAIGADNTVAVHIRHIREKIE----INPKEPRYLKVVWGVGYKIDKN 271 >gi|269929028|ref|YP_003321349.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269788385|gb|ACZ40527.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 256 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 20/158 (12%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------------LKV 121 PLI +S+ S + + F+ G DD + +P E++ARV A+ RR LKV Sbjct: 74 PLIFVSEQGSTRAKVRAFEHGADDFIVEPYDPAELVARVGAVARRCQRADYQAMGTVLKV 133 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + V GR+P + L E R+LE LM N +++ + +G + Sbjct: 134 GDVELAIGELTVRVAGREPVL------LTPTEMRLLECLMRNSQITISRETLIERTWG-Y 186 Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218 D E N V+ +IS+LRKKL R+ + + + R +GY Sbjct: 187 DFVGESNRVDVYISRLRKKLERDPAAPEYLHTVRGVGY 224 >gi|229065125|ref|ZP_04200418.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] gi|228716154|gb|EEL67873.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] Length = 234 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 20/217 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ + DG +E ++ + E + ++ G+ LE+ R IR Sbjct: 22 LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122 S++P+I ++ S + + G DD V KP RE+LARV A RR K Sbjct: 71 SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 130 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N GPI + S+ + E L RE +L YL + G+ + + + ++G +D Sbjct: 131 NTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 189 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 + V+ + +LR+K+ + + ++R +GY Sbjct: 190 YFGDVRTVDVTVRRLREKVEDNPSHPTLIVTRRGVGY 226 >gi|224371346|ref|YP_002605510.1| two-component response regulator (OmpR-like protein) [Desulfobacterium autotrophicum HRM2] gi|223694063|gb|ACN17346.1| two-component response regulator (OmpR-like protein) [Desulfobacterium autotrophicum HRM2] Length = 226 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 4/159 (2%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122 R +R S VP+I I+ + F+ GVDD + KP RE++ARV A+ RR K S Sbjct: 67 REVRKFSDVPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVLRRTFKKSS 126 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ GP+++ R E+ G L E I L+ + + + Q+ + G ++ Sbjct: 127 DDVLALGPVQLNKTSRIAEINGNELSLTPSEFDIFSVLLESPNRVFTRAQLIEKVQG-YN 185 Query: 183 EAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 E ++ HI LRKK+ L G + S GY I Sbjct: 186 YDGYERTIDFHIKNLRKKIGVYLPGEKIIQSTYGYGYKI 224 >gi|170727148|ref|YP_001761174.1| two component transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169812495|gb|ACA87079.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 224 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 78/151 (51%), Gaps = 3/151 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130 + P++ ++ + Q ++ ++G DD + KP E++AR+ A+ RR +GP Sbjct: 72 KAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPVITSGP 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + EV + E +ILEYLM + + VAK ++ +Y D+ + N + Sbjct: 132 LNLDLAAKQVTMHEEVMEVTAFEYQILEYLMRHCHEVVAKQRLLDVVYA--DKEGDPNTI 189 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E +S+LRKKL + +P+ + R GY + Sbjct: 190 EVMVSRLRKKLTSGGLDNPIATIRGQGYKFN 220 >gi|58040125|ref|YP_192089.1| cell cycle transcriptional regulator CtrA [Gluconobacter oxydans 621H] gi|58002539|gb|AAW61433.1| Cell cycle transcriptional regulator CtrA [Gluconobacter oxydans 621H] Length = 247 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 2/136 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127 A P++ +S Q + F G DD + KP E++AR+ A+ RR + + + Sbjct: 69 ARITTPILVLSALLRPQAKIRAFSMGADDYMTKPYDAGELVARLQAVMRRSRGFAEPKLR 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + + +G++ V G L +E ILE L+ +G + K + +YG DE E Sbjct: 129 VGNLELDLNGKNVTVDGAPLHLTGKEYAILELLVIRKGSVLTKDAFLNHLYGGIDEP-EM 187 Query: 188 NVVESHISKLRKKLRN 203 +++ I KLR+KL+N Sbjct: 188 KIIDVFICKLRRKLQN 203 >gi|108805768|ref|YP_645705.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108767011|gb|ABG05893.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 228 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 26/219 (11%) Query: 9 ALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 AL ++G+ + GD +LE FN+ FE L I ++ K + E+ R I Sbjct: 24 ALEREGFQVQAVGDGEAALEAFNT--FEPHL---------IILDIMLPKLDGT-EVCRRI 71 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 RA S VP++ ++ + + G DD V KP RE++ARV AI RR +V A Sbjct: 72 RAQSDVPILMLTAKDDEIDRVVGLELGADDYVTKPFAVRELVARVRAIMRRAQVP---AG 128 Query: 128 TGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 P + DG R V G L E +L L +N GK +++ + ++G Sbjct: 129 QRPDELNYDGLKINLPSRRVSVDGREVDLTYTEFELLVTLASNPGKVFSRSALLRRVWG- 187 Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218 DE +E V+ HI LR+K+ R+ + + + R +GY Sbjct: 188 -DEFRDERTVDVHIRHLREKIERDPRNPEFIHTARGVGY 225 >gi|319935984|ref|ZP_08010407.1| hypothetical protein HMPREF9488_01238 [Coprobacillus sp. 29_1] gi|319808934|gb|EFW05441.1| hypothetical protein HMPREF9488_01238 [Coprobacillus sp. 29_1] Length = 221 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/218 (22%), Positives = 102/218 (46%), Gaps = 4/218 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V+ DD+ + + AL D ++ FN + E + SS + I+ G G Sbjct: 4 ILVVEDDQLIQRSLKEALELKDYEVIQAFNVKQTLEIMNSSIDLIIMDIQ-LPDGNG--- 59 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + L + IR + + PL+ ++ S Q+ ++ +G DD V KP +E+ AR+ ++ RR+ Sbjct: 60 ISLCQHIRENYRTPLLFLTCKNSEQSIVEGLSAGGDDYVCKPFGIQELYARIQSLLRRIP 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V+ + T +++ + G++ L IL L+ + G + + + + Sbjct: 120 VNQDIIYTADLKIDTKNYQVYKNGQLLDLTNVCYHILLCLIQHHGMVITRQNLLDLVESQ 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E+N + H+ ++R+ L G +++ R +GY Sbjct: 180 TQHFIEDNTLSVHMKRIRQTLGTYHGQSYIETLRGVGY 217 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300076603|gb|ADJ66002.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 16/171 (9%) Query: 61 LELPRI--------IRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L LPR+ +RA ++ P++ ++ L + + G DD + KP E+ AR Sbjct: 52 LTLPRMDGMEVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEAR 111 Query: 112 VAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 V A+ RR + NN A T G + + R GE+ L RE +LE L+ G V Sbjct: 112 VKALLRRSQ--NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTV 169 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGY 218 K ++F ++ L D A + +E +I +LRKKL ++ G + + R LGY Sbjct: 170 PKEKLFQQVFTLEDNA-SMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGY 219 >gi|312193413|ref|YP_003991079.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|311217865|gb|ADP76468.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 237 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 7/147 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR PL IS S L F G DD + KP + E++ARV A +R Sbjct: 64 LEMCRAIRKGCDAPLFFISAKSSDLDKLTGFAHGCDDYITKPFNPLEVVARVKAQLQRYL 123 Query: 121 VSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ + I F + V+G+ P + R+L + + + K Q++ Sbjct: 124 SKENKEKQSEILDFGRFQLNLAAAELIVEGKPVPCSAQVYRLLAFFCKHPNQVFTKEQLY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++G D+ V++N V HI K+R+K+ Sbjct: 184 YQVWGE-DQLVDDNTVMVHIRKIREKI 209 >gi|217977019|ref|YP_002361166.1| two component transcriptional regulator PhoB, winged helix family [Methylocella silvestris BL2] gi|217502395|gb|ACK49804.1| two component transcriptional regulator PhoB, winged helix family [Methylocella silvestris BL2] Length = 265 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 20/177 (11%) Query: 57 GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G LE+ R +RA +P+I ++ + G DD V KP E++ARV Sbjct: 83 GVSGLEICRRMRAREATRSLPVIMLTARGEESERVRGLSIGADDYVVKPFSVPELMARVR 142 Query: 114 AIYRR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 ++ RR L + + RV GRD + F R+LE+LM Sbjct: 143 SLLRRARPDRVAAVLSAGDLELDRQNWRVRRTGRDVHLGPTEF-------RLLEHLMERP 195 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G+ ++ Q+ +++GL E ++E V+ H+ +LRK L DP+ + R GYS D Sbjct: 196 GRVFSRAQLLDSVWGLSAE-IDERTVDVHVGRLRKALTAPGERDPIRTVRGAGYSFD 251 >gi|332668120|ref|YP_004450908.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332336934|gb|AEE54035.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 229 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 10/169 (5%) Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR+ VP+I ++ S+ L+ F G +D + KP RE+LAR+ + + Sbjct: 64 EVCKAIRSTKPDVPIIMVTALGSMDEKLNGFAVGANDYLVKPFDFRELLARMRVLLKN-A 122 Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS N ++V D ++ G + PL +E +L +L+ N G+ V+K I Sbjct: 123 VSFNTDNPSLLKVADLEMNLDTKNVYRAGHLIPLTPKEFGLLVFLIKNEGRVVSKYDIME 182 Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ L FD NVVE +I+ LRKK+ + +K +GY + N Sbjct: 183 QVWDLNFDSGT--NVVEVYINFLRKKIDRNYEPKLIHTKPGMGYYLAAN 229 >gi|315613043|ref|ZP_07887954.1| response regulator [Streptococcus sanguinis ATCC 49296] gi|315315153|gb|EFU63194.1| response regulator [Streptococcus sanguinis ATCC 49296] Length = 227 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/220 (20%), Positives = 100/220 (45%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D AL++D + L G ++ +F++ Q + D I L GE Sbjct: 4 ILVIEDEALIRDEIVILLEKTGYQVDKLT--DFKDTSQQVLQYDTDLIILDLNLPGETGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +++ VP++ ++ L+ + G D+ + KP LAR+ I +R + Sbjct: 62 QICKNLKSKRSVPILVLTSREQLKDEIYALKLGADEYLTKPFKKERFLARIENILKRYEG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N E + + G LP+ + ++LE L+ + K ++ ++ Sbjct: 122 RRNLLEKDNFLLDRQTYTLYINGHSILLPQNQGKLLETLLVTNAPVITKEELSMKLWN-T 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++EN ++ +I++L+K ++ V S R +GY ++ Sbjct: 181 TEFIDENALQVNIARLKKVMKQAGIALQVKSVRGIGYKLE 220 >gi|281179028|dbj|BAI55358.1| two-component response regulator [Escherichia coli SE15] Length = 239 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 104/219 (47%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ F + G ++ + + + L + ++D + I ++ G Sbjct: 19 ILLIEDNQRTQEWVTQGFSEAGYVIDAVS--DGRDGLYLALKDDYALIILDIMLPGMDGW 76 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 77 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 N+ E +++ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 137 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 196 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 FD + N V+ I +LR K+ + + + R +GYS Sbjct: 197 FDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 233 >gi|238920215|ref|YP_002933730.1| DNA-binding transcriptional regulator PhoP [Edwardsiella ictaluri 93-146] gi|238869784|gb|ACR69495.1| transcriptional regulatory protein PhoP [Edwardsiella ictaluri 93-146] Length = 224 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 2/150 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P++ ++ S Q + ++G DD V KP H E+LAR+ A+ RR +++ P Sbjct: 73 LPILVLTARESWQEKVAALEAGADDYVTKPFHLEEVLARMQALMRRNSGLASQIISMPPF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + R+ V + L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 133 QADLSRRELRVNETLIKLTAFEYTIMETLIRNSGKVVSKDALMLQLYP-DAELRESHTID 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +LRKKL+++ D + + R GY D Sbjct: 192 VLMGRLRKKLQSEYPADVITTVRGQGYRFD 221 >gi|172065501|ref|YP_001816213.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997743|gb|ACB68660.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 221 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 103/230 (44%), Gaps = 27/230 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL------QSSAREDVSAIEAFLIG 55 +L++D L+ DG A G+ +GF +W+ Q R V A +G Sbjct: 3 ILLVEDDVLLGDGIRA-----GLRQQGFQV----DWVRDGDAAQRELRAHVHAATVLDLG 53 Query: 56 ----KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 G VL+ RI R + P++ ++ ++ + D+G DD V KP+ E+ AR Sbjct: 54 LPLVDGMDVLK--RIRRDGTASPILVLTARDAVPDRIRALDAGADDYVIKPVDLYELGAR 111 Query: 112 VAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + A+ RR R + + R G L RE +L LM N G+ +++ Sbjct: 112 LRALVRRSHGRPMERLHAQDVELEPASRTTRRAGVAVALSTREFDLLHILMLNAGRVLSR 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI +Y + + VE N VE HI +LR KLG + + + R +GY + Sbjct: 172 EQIEQYLYS-WGQEVESNAVEVHIHRLRA----KLGSELIRTVRGVGYVL 216 >gi|22538256|ref|NP_689107.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|25012116|ref|NP_736511.1| DNA-binding response regulator [Streptococcus agalactiae NEM316] gi|76798542|ref|ZP_00780775.1| Two-component response regulator czcR [Streptococcus agalactiae 18RS21] gi|77413189|ref|ZP_00789387.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|22535169|gb|AAN00980.1|AE014287_20 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|24413660|emb|CAD47740.1| Unknown [Streptococcus agalactiae NEM316] gi|76586106|gb|EAO62631.1| Two-component response regulator czcR [Streptococcus agalactiae 18RS21] gi|77160729|gb|EAO71842.1| DNA-binding response regulator [Streptococcus agalactiae 515] Length = 223 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 3/152 (1%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAET 128 SQV ++ ++ +++ + D G DD + KP E++AR+ A+ RR +VS++ + Sbjct: 71 SQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRANRQVSSDDIQI 130 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 I + + + L +E +LEYL +R + +++ QI ++ +D E N Sbjct: 131 QDITINLSTKQVWRNDNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVWD-YDYYGESN 189 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ I LR+KL N + +KR LGY I Sbjct: 190 IIDVLIKNLRRKLDNNRDGSLIKTKRGLGYVI 221 >gi|270293204|ref|ZP_06199415.1| DNA-binding response regulator [Streptococcus sp. M143] gi|270279183|gb|EFA25029.1| DNA-binding response regulator [Streptococcus sp. M143] Length = 225 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP + +LA+V + RR Sbjct: 67 IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + + D QGEV L + E +IL L + G VA+ + ++ D Sbjct: 127 SLLEYAGVILNTKSMDLHYQGEVLSLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLAGFIETKKGIGYGL 222 >gi|225181176|ref|ZP_03734622.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225168145|gb|EEG76950.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 232 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 100/223 (44%), Gaps = 31/223 (13%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 LV++GY + DG E L + D+ ++ L K + R IR Sbjct: 23 LVQEGYAVVVAYDG---------EEATRLMQTESPDLVLLDIMLPKKDG--FAVCRDIRR 71 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN----- 124 S VP+I ++ + T+ + G DD V KP RE+LARV A RR + + Sbjct: 72 VSNVPIIMLTAKDTELDTVLGLELGADDYVTKPFSAREVLARVKAQLRRTQAAKGPGGEF 131 Query: 125 ------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + +TG + + +G D L RE +L YLM N G +++ ++ S ++ Sbjct: 132 LICDDLQVDTGRMEIRKNGVD-------IDLTYREYLLLVYLMRNAGYVISREKLLSEVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 G +D +E V+ I +LR+K+ N + +KR GY I Sbjct: 185 G-YDFYGDERTVDVTIRRLREKIEENPSQPRYIRTKRGAGYFI 226 >gi|251796056|ref|YP_003010787.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543682|gb|ACT00701.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 225 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 3/131 (2%) Query: 94 GVDDVVNKPIHHREILARVAAIYR-RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152 G DD V KP E+LAR+ A R + A GP RV ++ Q +V L Sbjct: 97 GADDYVVKPFSFEELLARIKARLRNQFPSLLGEATYGPFRVNDVKKELIYQDQVLELSPT 156 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E +L+Y++ N G ++K QI +++G + EEN+VE +I LR KL +K + + Sbjct: 157 EYELLKYIVQNNGIVLSKAQILDSVWG-YRFGGEENIVEVYIRSLRDKLGDK-EHRLIRT 214 Query: 213 KRFLGYSIDWN 223 R +GY +D + Sbjct: 215 LRGVGYRMDLS 225 >gi|110801928|ref|YP_699744.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682429|gb|ABG85799.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 228 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 4/144 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 +E+ + IR S VP+I ++ + + G DD V KP +E+LARV A+ RR Sbjct: 65 MEVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124 Query: 120 -KVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +N P + + ++ GE P +E +L YL +N+ K + Q+ + Sbjct: 125 GEEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G +D + V+ HI +LR+KL Sbjct: 185 WG-YDYPGDSRTVDVHIKRLREKL 207 >gi|323702467|ref|ZP_08114131.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323532606|gb|EGB22481.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 222 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 5/150 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ ++ +++ ++ D+G DD + KP E+LARV A+ RR V + Sbjct: 73 TPVLMLTAKDAVENRIEGLDAGADDYLIKPFSTGELLARVRALGRRRNVQLGGDKLEAWG 132 Query: 133 VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + D + EV G L +E +LE M N G+ + + QI ++GL D VE V Sbjct: 133 LILDPQRCEVTKDGTTIKLTLKESLLLELFMRNPGQVITREQILDRVWGL-DSDVETGTV 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++ LRKKL + +++ R +GY + Sbjct: 192 EIYVHYLRKKLNFR--DISIETIRGVGYCL 219 >gi|302528568|ref|ZP_07280910.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302437463|gb|EFL09279.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 244 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 82/170 (48%), Gaps = 10/170 (5%) Query: 56 KGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G +E+ R +RA P++ ++ L + G DD + KP RE+ ARV Sbjct: 79 SGMDGIEICRALRAAGDWTPVLFVTARDDELDRLLGLEIGADDYLTKPFSPRELAARVRT 138 Query: 115 IYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + RR S + A T G +R+ GR L E +L YL+ + G+ +++ Sbjct: 139 VLRR--ASGSPATTLACGGVRIDVPGRRAWAGEAEVALTSTEFDLLAYLLRHPGQVLSRD 196 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 Q+ SA++G + A V+ H+++LR KL + P+ + R +GY+ D Sbjct: 197 QLLSAVWG-YAAAAGTRTVDVHVAQLRAKLGDD---SPIRTVRGIGYAAD 242 >gi|254558966|ref|YP_003066061.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens DM4] gi|254266244|emb|CAX22002.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens DM4] Length = 220 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 17/225 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D ++ DG A G G ++E + + +++ ++ L G G V Sbjct: 3 ILVVEDDPILSDGLRAGLGLSGATVECVATCADADAALAASGFGAVVLDLMLPDGSGLDV 62 Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R +R + P++ ++ ++ + D G DD + KP E+ AR+ A+ RR Sbjct: 63 L---RGLRERGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELAARIRAVVRR- 118 Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ RA E IR+ + GE P+ RRE +L LM +K ++ Sbjct: 119 --ASGRASACLEHAGIRLDPAELTVTLHGEPVPVSRREFMVLTALMERPNVLRSKAELEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E VE N VE H+ LR K+G +++ R LGY + Sbjct: 177 RLYG-WQEEVESNTVEVHVHNLRA----KIGKHAIETVRGLGYRM 216 >gi|229176141|ref|ZP_04303634.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] gi|228607376|gb|EEK64705.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] Length = 234 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 20/217 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ + DG +E ++ + E + ++ G+ LE+ R IR Sbjct: 22 LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122 S++P+I ++ S + + G DD V KP RE+LARV A RR K Sbjct: 71 SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 130 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N GPI + S+ + E L RE +L YL + G+ + + + ++G +D Sbjct: 131 NTEMVIGPIVINSNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 189 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 + V+ + +LR+K+ + + ++R +GY Sbjct: 190 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGY 226 >gi|227485289|ref|ZP_03915605.1| response regulator [Anaerococcus lactolyticus ATCC 51172] gi|227236749|gb|EEI86764.1| response regulator [Anaerococcus lactolyticus ATCC 51172] Length = 219 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 4/153 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125 +R S +P+I ++ + +SG DD + KP E+L+RV AI RR+ K + Sbjct: 65 LREFSDIPVIILTAKTDEFDKVLGLESGADDYITKPFSILELLSRVKAILRRVNKADCDH 124 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + + + R +V GE L +E +L M N G + + I+G +D Sbjct: 125 LTYKNLSINTKKRTVKVNGEKIDLTYKEFEMLFLFMNNMGNVITREDFLLKIWG-YDYQG 183 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E V+ HI+ LR KL++ + + + R LGY Sbjct: 184 ETRTVDVHIASLRSKLKDAGSY--ISTVRNLGY 214 >gi|172038291|ref|YP_001804792.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171699745|gb|ACB52726.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 225 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 86/168 (51%), Gaps = 14/168 (8%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + L + +RA+ + P++ ++ ++Q + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 IALCQQLRANGCKTPILMLTARDTIQDRVKGLDAGADDYLIKPFDLEELSARIRALLRR- 118 Query: 120 KVSNNRAETGPIRVFSD-GRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 PI + D DP Q + L +E R+LE+ + + + +++Q+ Sbjct: 119 ----GETALPPILTWGDLCVDPNTCEVTYQQQALNLSPKEYRLLEFFLRHPRRMFSRSQL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++ + D+ EE V++HIS LR+KL+ L D +++ LGY + Sbjct: 175 LDHLWAM-DQIPEEATVKAHISSLRQKLKTAGLESDVIETVYGLGYRL 221 >gi|154505123|ref|ZP_02041861.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149] gi|153794602|gb|EDN77022.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149] Length = 236 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 14/169 (8%) Query: 45 DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D ++ L G GE VL+ R + ++P++ +S S+Q + G DD + KP Sbjct: 53 DCVLLDLMLPGMTGEAVLDQIRQ-KQKKEMPVLILSAKVSVQDKVKLLRLGADDYITKPF 111 Query: 104 HHREILARVAAIYRRL--KVSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRI 156 E++ARV A RR + N AE R ++ R EV G PL E I Sbjct: 112 DPEEVIARVEAAMRRYTKEAQNMEAEQEVFRYKNLSLYPQSRKVEVSGIELPLTMHEYDI 171 Query: 157 LEYLMANRGKRVAKTQIFSAIY--GLFDEAVEENVVESHISKLRKKLRN 203 L L+ N K ++ ++ ++ G + E+N V H+S LRKK++ Sbjct: 172 LYLLIQNPQKVYSREHLYEQVWKGGYYG---EDNTVNVHVSNLRKKIQK 217 >gi|325914487|ref|ZP_08176831.1| two component transcriptional regulator, winged helix family [Xanthomonas vesicatoria ATCC 35937] gi|325539257|gb|EGD10909.1| two component transcriptional regulator, winged helix family [Xanthomonas vesicatoria ATCC 35937] Length = 221 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 9/154 (5%) Query: 57 GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 GE L + R +R+H P+I ++ L + D+G DD + KP E++AR+ AI Sbjct: 56 GESGLTVIRFLRSHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAI 115 Query: 116 YRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR S R G + V R G L E R+L LM G+ V K Sbjct: 116 TRR---SQGRVVPVLSQGDVCVDPSSRKVTRAGTWVALSAHEYRLLLALMERAGRVVTKD 172 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 Q+ ++YG E N++ ++ +LR+KL ++L Sbjct: 173 QLEESVYGGPSEG-GSNMIAVYVHQLRRKLGDEL 205 >gi|320528447|ref|ZP_08029609.1| response regulator receiver domain protein [Solobacterium moorei F0204] gi|320131361|gb|EFW23929.1| response regulator receiver domain protein [Solobacterium moorei F0204] Length = 227 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 5/140 (3%) Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----V 121 I + Q+P I +S + FD GVDD V KP +E++ R+ AI +R+ V Sbjct: 67 IKKTKPQLPFILLSALGEEYDRIHGFDVGVDDYVVKPFSSKELMMRIHAILKRVHPVEAV 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S+ + + + + R ++G+ L +E +L YL+ N G + + Q+ ++G + Sbjct: 127 SSEQFQIDGMVIDYSARTVTIEGQRIQLSPKEYELLVYLVKNMGIALTREQLLQNVWG-Y 185 Query: 182 DEAVEENVVESHISKLRKKL 201 D ++ +++HI LRK L Sbjct: 186 DFFGDDRTLDTHIKLLRKNL 205 >gi|312890843|ref|ZP_07750372.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311296626|gb|EFQ73766.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 227 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 75/143 (52%), Gaps = 5/143 (3%) Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 E+ + +R+ +++ P+I +S + + D G D + KP E+LARV A+ RR L Sbjct: 61 EVIKALRSFNNETPVIILSALNDTENVIKGLDLGAIDYLKKPFDLEELLARVRAVLRRSL 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + ++V R+ L RE +LEYL++N K V K+QI ++ Sbjct: 121 AQGSLKLQVEDLKVDLLSREVSRNNVNIILSNREFALLEYLLSNPNKVVTKSQILEKVWD 180 Query: 180 L-FDEAVEENVVESHISKLRKKL 201 + FD NVVE H+ +LRKK+ Sbjct: 181 INFDPG--SNVVEVHLYQLRKKM 201 >gi|302670595|ref|YP_003830555.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302395068|gb|ADL33973.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 225 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 98/188 (52%), Gaps = 15/188 (7%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 LVKDGY+ + +DG +L+ F +E+ +D+S I ++ E+ + IR Sbjct: 23 LVKDGYLVVEAEDGQQALDIF----YED-------KDISLIILDVMMPKRDGWEVCKEIR 71 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR-A 126 +S+VP+I ++ + L F+ GVD+ ++KP + + ARV+AI RR + +NN+ Sbjct: 72 TNSKVPIIMLTAKAEERDELLGFELGVDEYISKPFSPKILAARVSAILRRTNQAANNQIM 131 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 E G I V V G+ L +E +L + N+G +++ +I + ++ +D + Sbjct: 132 EIGGIVVNKVAHSVLVDGKEIDLSYKEFELLSFFFENKGVALSREKILNNVWN-YDYFGD 190 Query: 187 ENVVESHI 194 +++H+ Sbjct: 191 ARTIDTHV 198 >gi|259047884|ref|ZP_05738285.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259035561|gb|EEW36816.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 238 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 11/170 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S VP+I ++ S + + G DD V KP +RE++ARV A RR + Sbjct: 61 LEVCREIRKTSHVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQQ 120 Query: 121 VSNNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ E G + + D +GE L RE +L YL + G+ + + Sbjct: 121 LAPAETEEEKTANEIVLGALTIHEDAYVVSKRGEEIELTHREFELLHYLAKHIGQVITRE 180 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY I Sbjct: 181 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDTPSHPTWIMTRRGVGYYI 229 >gi|225571501|ref|ZP_03780497.1| hypothetical protein CLOHYLEM_07599 [Clostridium hylemonae DSM 15053] gi|225159578|gb|EEG72197.1| hypothetical protein CLOHYLEM_07599 [Clostridium hylemonae DSM 15053] Length = 228 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 3/155 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 ++ S P++ ++ L L G D+ + KP +LAR + RR + Sbjct: 67 LKERSSCPVLVLTSRNHLNDELRALRIGADEYLTKPCRKERLLARAENLMRRFEGREQEI 126 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + V G LP + +I+E LM RG V K ++ SA++G E ++ Sbjct: 127 RLGELTLDIRTYTLYVSGCSVLLPENQGKIMEKLMKKRGGTVTKEELSSALWGT-TEYID 185 Query: 187 ENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 EN ++ ++++L+K L +L D +++ R +GY I Sbjct: 186 ENALQVNMTRLKKTL-ARLSLDGRIETVRGVGYRI 219 >gi|171058057|ref|YP_001790406.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775502|gb|ACB33641.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 265 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 21/175 (12%) Query: 57 GEKVLELPRIIRAHSQVPLIGI----SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 G L R +R + I I +D P T+ +SG DD V K + E+LAR+ Sbjct: 58 GGHALSYARQLRGDQRTSGIAIIVIGADAPQAHDTVAALESGADDCVCKSVSVSEVLARI 117 Query: 113 AAIYRR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163 A+ RR L++S R + RV + GRD E L E R+L + M + Sbjct: 118 RAVMRRSAPQCGDQALEISGLRFDPAARRVTALGRDIE-------LCAIEYRLLHFFMTH 170 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + ++Q+ ++G VEE V+ H+ +LR+ L +++ R +GY Sbjct: 171 PDRILGRSQLLDQVWG-DHVCVEERAVDIHVRRLRRALEPSGHAALIETIRGMGY 224 >gi|166710635|ref|ZP_02241842.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 226 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I ++ + D+G +D V KP +E++AR+ A+ R+ Sbjct: 59 EVLREIRQWSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQAGA 118 Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E+ VF DG R+ + GE PL R+E ++ L+ + G+ V + Q+ Sbjct: 119 GSTVEES----VFDDGRLHIHLGLREVTLNGEAVPLSRKEYALVALLLKHAGRVVTQPQL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG------FDPVDSKRFLGYS 219 ++G E + + + + KLR+KL++ +P RF+G + Sbjct: 175 LRELWGPTHEE-DTHYLRILVGKLRQKLQDDAAAPHYIVTEPGVGLRFIGVT 225 >gi|163816850|ref|ZP_02208213.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759] gi|158448107|gb|EDP25102.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759] Length = 224 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 2/162 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L +I VP+I ++ ++ D G DD + KP +E+LAR+ AI RR + Sbjct: 63 LSKIRSEGCDVPVIMLTAKSETDDKINGLDLGADDYLAKPFDTKELLARIRAITRRKSEA 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + S + G L +E +I+E LMAN+ ++ + I+G + Sbjct: 123 VSTDVIYGDCTLNSLNYELSSGGGSVKLQNKEYQIMELLMANQKSIISAELMMEKIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D E +VV +IS LRKKL + + R GY+++++ Sbjct: 182 DTDTEISVVWVNISYLRKKLGQIGSKVSIKAVRNQGYTLEYS 223 >gi|148243511|ref|YP_001228668.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147851821|emb|CAK29315.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 229 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 87/162 (53%), Gaps = 3/162 (1%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L++ R +R +++P+I I+ + + ++G DD ++KP + RE+LARV A+ RR Sbjct: 65 LDVCRRLRDTGNRIPVIMITARDEMDDRVAALEAGADDFISKPFNIREVLARVKALLRRS 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S ++ G + + R G+ L RE +LE + N + +++TQ+ ++ Sbjct: 125 TAISPDQLNFGDLHLNGAERRCSYGGQELTLTVREFDLLECFLRNPRQALSRTQLIQNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D ++NVV+ ++ LR+KL + + R +G+++ Sbjct: 185 G-EDYFGDDNVVDVYVRYLRRKLEEVKPDRIIQTIRGIGFAL 225 >gi|160896769|ref|YP_001562351.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160362353|gb|ABX33966.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] gi|222836939|gb|EEE75332.1| predicted protein [Populus trichocarpa] Length = 239 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 109/216 (50%), Gaps = 19/216 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +V G D G +++ S E + + D++ I+ L G L Sbjct: 3 LLLVEDDVMVASGIKLGLSDAGYAVDWVGSAERALEVLAQEAFDLAVIDIGL--PGIDGL 60 Query: 62 ELPRIIRAH----SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 EL R +R+ S +P++ ++ +LQ + D G DD + KP E+LAR+ A+ R Sbjct: 61 ELTRRLRSSAVESSAMPVLILTARDALQDRVQGLDQGADDYMVKPFELPELLARLRALLR 120 Query: 118 RLKVSNNRAET-GPIRVFSDGR---------DPEVQGEVFP--LPRRERRILEYLMANRG 165 R + + + + GPI + + GR D E +G++ P L RE +LEYL+ + Sbjct: 121 RSQAATSAVLSFGPIELDTAGRRAGARQPAQDDESEGKLLPIDLGPREWTVLEYLLIHAP 180 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 K +K ++ A+ G +D + N VE ++S+LR KL Sbjct: 181 KPASKDKLLQALTG-WDREITPNAVEVYVSRLRSKL 215 >gi|92116579|ref|YP_576308.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799473|gb|ABE61848.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 220 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 10/167 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R + + Q+P+I ++ ++ + D G DD + KP RE+LAR+ AI Sbjct: 59 GTEVLRAFRTM--NRQLPVIIVTARDAIDDRIHGLDLGADDYLVKPFEIRELLARMRAIL 116 Query: 117 RRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + S N A G I + + G L RE +L+ LM G +++ + Sbjct: 117 RR-QGSGNAAILSNGTISLDPATHEVAHGGGAARLTAREFALLQALMLRPGTILSRVDLE 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 IYG ++E VE N VE I +RK KLG + + R +G+ +D Sbjct: 176 RHIYG-WNEEVESNAVEFLIHAIRK----KLGASSIRNVRGVGWMVD 217 >gi|319650220|ref|ZP_08004366.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2] gi|317398051|gb|EFV78743.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2] Length = 233 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 94/200 (47%), Gaps = 21/200 (10%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIR 68 +K+GY +F DG +GF E W D+ ++ L I G + L R IR Sbjct: 20 FMKEGYHGVFVHDG--QQGFEHFNKERW-------DLLIVDWMLPIMDG---VTLCRKIR 67 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE- 127 S+VP+I ++ S + + G DD V KP ++AR+ A+ RR + A+ Sbjct: 68 ELSKVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRFQAETGSADE 127 Query: 128 -----TGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + ++ + R+ G++ L +E +L YL+ + + + Q+ +++G + Sbjct: 128 PHYVASEYFKISKESREAYYNGQLLKNLTPKEFDLLYYLVKHPKQVFTREQLLDSVWG-Y 186 Query: 182 DEAVEENVVESHISKLRKKL 201 +E V+ HI +LRKK+ Sbjct: 187 QFYGDERTVDVHIKRLRKKI 206 >gi|303240775|ref|ZP_07327288.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302591663|gb|EFL61398.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 224 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 15/212 (7%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L+++GY + DG+ + L+ V I L+ EL +R Sbjct: 20 VLIQNGYEVILAKDGI-----------DALEKMDNHHVDLIVLDLMMPRMDGYELSETLR 68 Query: 69 -AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRA 126 + +P++ ++ + F G DD + KP+ E++ R+AA+ RR K+ N +R Sbjct: 69 KCNCNLPILMVTAKETPADKKKGFLVGTDDYMVKPVDEEEMILRIAALLRRSKIVNEHRL 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + D G V LP +E +L L++ + K + + I+G+ + + Sbjct: 129 TVGETVLDYDELTVSYMGYVQELPNKEFTLLYKLLSYQNKIFTRRSLMDEIWGM-NSDTD 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E V+ HI++LR +L+ F+ + + R LGY Sbjct: 188 ERTVDVHINRLRDRLKENPDFEII-TVRGLGY 218 >gi|169795326|ref|YP_001713119.1| putative two-component response regulator [Acinetobacter baumannii AYE] gi|213158688|ref|YP_002319986.1| two-component system response regulator protein [Acinetobacter baumannii AB0057] gi|215482859|ref|YP_002325062.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB307-0294] gi|260554438|ref|ZP_05826659.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|301346782|ref|ZP_07227523.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB056] gi|301510388|ref|ZP_07235625.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB058] gi|301595944|ref|ZP_07240952.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB059] gi|332850436|ref|ZP_08432756.1| putative transcriptional regulatory protein QseB [Acinetobacter baumannii 6013150] gi|332871886|ref|ZP_08440298.1| putative transcriptional regulatory protein QseB [Acinetobacter baumannii 6013113] gi|169148253|emb|CAM86118.1| putative two-component response regulator [Acinetobacter baumannii AYE] gi|213057848|gb|ACJ42750.1| two-component system response regulator protein [Acinetobacter baumannii AB0057] gi|213988252|gb|ACJ58551.1| Transcriptional regulatory protein qseB [Acinetobacter baumannii AB307-0294] gi|260410980|gb|EEX04277.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|332730707|gb|EGJ62018.1| putative transcriptional regulatory protein QseB [Acinetobacter baumannii 6013150] gi|332731100|gb|EGJ62401.1| putative transcriptional regulatory protein QseB [Acinetobacter baumannii 6013113] Length = 220 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GEKVL R VP+I I+ S+ ++ D G +D + KP E+ AR+ A Sbjct: 59 GEKVLTTIR--HKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQL 116 Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+ +S T G +++ + + G+ L +E +IL LM + + + Q+ Sbjct: 117 RKQTLSQQSILTWGDLQLDTQAKVVLSAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A+Y + E +E N +E I +LRK K+G + + R LGY + Sbjct: 177 ALYA-WGEEIESNAIEVFIYQLRK----KIGSSSIKTIRGLGYRM 216 >gi|158319177|ref|YP_001511684.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139376|gb|ABW17688.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 231 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/142 (34%), Positives = 70/142 (49%), Gaps = 9/142 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +P+I IS + T ++ + G DD + KP E+LARV A RR V +N Sbjct: 70 IRKLKNMPIIVISAKLAQDTKIEVLNLGADDFIVKPFDVNEVLARVEAQLRRYMVFSNPR 129 Query: 127 ETGPIRVFSD---GRDP-EVQGEVFPL--PRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + I + D RD EV + P+ +E ILE LM + K K +F ++ Sbjct: 130 DKQNILTYKDLVLNRDTVEVTMKGLPISVTAKEFAILELLMEHPKKVFTKANLFEQVWN- 188 Query: 181 FDEAV-EENVVESHISKLRKKL 201 DE + ++N V HIS LR KL Sbjct: 189 -DEFLGDDNTVNVHISNLRSKL 209 >gi|332342732|gb|AEE56066.1| transcriptional regulatory protein PhoP [Escherichia coli UMNK88] Length = 223 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 105/218 (48%), Gaps = 5/218 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ + ++ + D++ ++ L E L Sbjct: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGL--PDEDGLS 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R++ +P++ ++ S Q ++ +G DD V KP H E++AR+ A+ RR Sbjct: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEMMARMQALMRRNSG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ + EV L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E E + ++ + +LRKK++ + + + + R GY Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY 218 >gi|326789482|ref|YP_004307303.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326540246|gb|ADZ82105.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 222 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 104/209 (49%), Gaps = 25/209 (11%) Query: 32 LEFEEW-LQSSAREDVSAIEAFLIGKGEKVL----ELPRI--------IRAHSQVPLIGI 78 L E+W +Q ED S + ++ K K++ LP IR S +P++ + Sbjct: 19 LSLEKWGMQVQLIEDFSNVLEEVVRKQPKLVLMDVNLPYYDGFYWCGRIREVSNLPILFL 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG- 137 S S + ++G DD + KP + +L+++ A+ RR + + G + ++D Sbjct: 79 SSRDSNMDVIMGINNGGDDYITKPFDTQVLLSKINALLRR---AYQYTDAGALLYYNDAV 135 Query: 138 -----RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + +G L + E +IL L+ N+GK V++ +I +++ DE + +N + Sbjct: 136 LDIDKCELRYKGNSLELTKNEIKILTLLIRNKGKVVSRDKIMMSLWN-DDEFISDNTLTV 194 Query: 193 HISKLRKKLRNKLGFDPV-DSKRFLGYSI 220 ++++LR K++ ++G + V +K+ LGY + Sbjct: 195 NMTRLRSKMK-EIGLEEVIKTKKGLGYMM 222 >gi|227514651|ref|ZP_03944700.1| response regulator [Lactobacillus fermentum ATCC 14931] gi|227086960|gb|EEI22272.1| response regulator [Lactobacillus fermentum ATCC 14931] Length = 187 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 3/146 (2%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIR 132 P++ ++ ++ F SG DD + KP+ E+ RVAA+ RR K+++ R T G Sbjct: 37 PVLMLTAKTTITDKTTGFTSGADDYLTKPVDLAELKLRVAALLRRAKINSARQITIGQTI 96 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + + + G L ++E +L L++ K + Q+ I+G+ D E+ V++ Sbjct: 97 LNEENFTLTINGHFTTLAKKEFLLLFTLLSYPNKIFTQAQLLDQIWGI-DSDSTEDTVKT 155 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218 H+SK+RK L++ + + R LGY Sbjct: 156 HVSKVRKLLKDSNDV-KITTIRGLGY 180 >gi|163794790|ref|ZP_02188760.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [alpha proteobacterium BAL199] gi|159180063|gb|EDP64588.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [alpha proteobacterium BAL199] Length = 229 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 101/223 (45%), Gaps = 25/223 (11%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPR 65 +R V+ GY DG EG +L + D ++ L G G VL+ R Sbjct: 19 ERGFVEQGYAVDRTADG--REGL-------FLATGQDYDAVVLDRMLPGLDGLSVLKAVR 69 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 A Q P++ +S +L + +G DD + KP E+ AR+ A+ RR S Sbjct: 70 A--AGVQTPVLILSAMGALDERVRGLRAGSDDYLVKPFAFVELHARIDALIRR---SAAG 124 Query: 126 AETGPIR-VFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E P R V +D R G PL +RE ++LEYLM + G+ V +T + ++ Sbjct: 125 TEAPPSRLVVADLELDLLSRKVTRAGRPIPLQQREFQMLEYLMRHAGRVVTRTMLLEGVW 184 Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + NV++ HIS+LR+K+ + + R GY + Sbjct: 185 NYHFDP--QTNVIDVHISRLRQKVDKDFDSPLIHTVRGSGYML 225 >gi|126470034|dbj|BAF48119.1| hypothetical protein [Rhodococcus rhodochrous] Length = 251 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 8/147 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R S ++ ++ TL G DD + KP RE++AR+ A+ RR + Sbjct: 83 VEVCRQLRTFSDAYVVMLTARTEELDTLIGLSVGADDYMTKPFGPRELIARIQAMMRRPR 142 Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ A + IR F D GR+ V G L R E +L L + G + + Q+ Sbjct: 143 TTDT-ARSRQIRTFGDLSIDVEGREVTVDGVPVSLTRTEFDVLAALSQDPGIVITRAQLI 201 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 A++G + +E++V+ HI LR+KL Sbjct: 202 GAVWG-PNWVGDEHLVDVHIGHLRRKL 227 >gi|17546455|ref|NP_519857.1| two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428753|emb|CAD15438.1| probable two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 230 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPI 131 +P++ ++ + +++ + + G DD + KP E+ AR A+ RR + + GP+ Sbjct: 73 LPVMILTAHGAVEERVRGLNLGADDYLTKPFDLTEVEARARALIRRSHGHERTQLQCGPL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 ++GE L RER +LE LM G+ V K I I+G+ +E+V + +E Sbjct: 133 HYDGTSGAFTLRGEALALTGRERAVLEVLMLRDGRAVNKAAISEKIFGI-NESVNADAIE 191 Query: 192 SHISKLRKKL 201 ++ +LRKKL Sbjct: 192 IYVHRLRKKL 201 >gi|261346186|ref|ZP_05973830.1| DNA-binding response regulator TctD [Providencia rustigianii DSM 4541] gi|282565842|gb|EFB71377.1| DNA-binding response regulator TctD [Providencia rustigianii DSM 4541] Length = 222 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 5/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + + + P++ ++ + + ++G DD + KP E+ AR+ A+ RR + Sbjct: 63 LASMRKRQQETPVLLLTANSDVSDRVKGLNAGADDYLTKPFDIAELEARIRALLRRSHGN 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N ++ F D ++ E L RE +L L RG+ V+KTQ+F ++ L D Sbjct: 123 INESQCYGDLCFHDDGYFLLRAEPLGLTPREYAVLNTLFHRRGRPVSKTQLFEQVFSLSD 182 Query: 183 EAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 EA ++ +E ++ ++RKKL G D +++ R LGY ++ Sbjct: 183 EANLQS-IELYVHRVRKKLA---GSDVNINTLRGLGYRLE 218 >gi|164687882|ref|ZP_02211910.1| hypothetical protein CLOBAR_01527 [Clostridium bartlettii DSM 16795] gi|164603157|gb|EDQ96622.1| hypothetical protein CLOBAR_01527 [Clostridium bartlettii DSM 16795] Length = 233 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 90/163 (55%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ S L + G DD V KP + + +LAR+AA+ +R ++ Sbjct: 73 ICREIRKTSEVPIIVVTSRDSEVDELMSMNLGADDFVTKPYNTQILLARIAALLKRSGMN 132 Query: 123 NNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +N + I + D + V L + E +IL YL+ ++G+ V++ + Sbjct: 133 SN---SNSILTYKDFKLNLSNATVIYNDKNIELTKNEVKILSYLINHKGEIVSRELLMEH 189 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 ++ D V+++ + +I++LRKKL +++G + ++++R LGY Sbjct: 190 LWN-SDFFVDDSTLTVNITRLRKKL-DEIGIKNVIETRRGLGY 230 >gi|153955166|ref|YP_001395931.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146348024|gb|EDK34560.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 225 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/221 (21%), Positives = 106/221 (47%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-AIEAFLIGKGEKVL 61 ++IDD +++ + +DG S+ F ++ + LQ E + + ++ + + Sbjct: 5 LVIDDDGYIRELICTVLKNDGFSV--FEAVNGRDALQKLGEEKIDLCVLDIMMPQMDGYE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 ++ R + +P++ ++ L + F+ G DD + KP E+L R+ A+ RR K Sbjct: 63 FCKQVRRYYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLRRYKV 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V++ G + + E + +P +E +L L + GK +++ ++ ++GL Sbjct: 123 VASQTINIGNLAMDKSRYTVISNNENYDIPMKEFELLFMLGSYHGKTLSRNRLIEEVWGL 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D E ++ HI++LR++ + + + + R LGY ++ Sbjct: 183 -DFEGNERTLDVHINRLRERFPSHVYKFKITTIRGLGYRLE 222 >gi|77461827|ref|YP_351334.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77385830|gb|ABA77343.1| phosphate regulon two-component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 229 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 32/217 (14%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 +++DD A +++ IA+ + + G++ LE E Q+ A + D+ ++ L Sbjct: 6 ILIVDDEAPIRE-MIAV----ALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--P 58 Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ +P+I ++ + + G DD + KP RE++AR+ Sbjct: 59 GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRA--ETG-----PI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 A+ RR ++ A E G PI RV DGR E + E R+L++ M ++ Sbjct: 119 AVLRRAGPTDGEAPIEVGGLLLDPISHRVTIDGRPAE-------MGPTEYRLLQFFMTHQ 171 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + + Q+ ++G + VEE V+ HI +LRK L Sbjct: 172 ERAYTRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207 >gi|53718445|ref|YP_107431.1| response regulator protein [Burkholderia pseudomallei K96243] gi|53725056|ref|YP_102132.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|124383485|ref|YP_001028396.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126440297|ref|YP_001057896.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126448259|ref|YP_001079631.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|126452671|ref|YP_001065131.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|167718314|ref|ZP_02401550.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] gi|167737359|ref|ZP_02410133.1| DNA-binding response regulator [Burkholderia pseudomallei 14] gi|167814484|ref|ZP_02446164.1| DNA-binding response regulator [Burkholderia pseudomallei 91] gi|167822949|ref|ZP_02454420.1| DNA-binding response regulator [Burkholderia pseudomallei 9] gi|167844517|ref|ZP_02470025.1| DNA-binding response regulator [Burkholderia pseudomallei B7210] gi|167893045|ref|ZP_02480447.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] gi|167901503|ref|ZP_02488708.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] gi|167909750|ref|ZP_02496841.1| DNA-binding response regulator [Burkholderia pseudomallei 112] gi|167917773|ref|ZP_02504864.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] gi|254176802|ref|ZP_04883459.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|254181603|ref|ZP_04888200.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|254187561|ref|ZP_04894073.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|254203812|ref|ZP_04910172.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|254208790|ref|ZP_04915138.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|254261588|ref|ZP_04952642.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] gi|254360157|ref|ZP_04976427.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|52208859|emb|CAH34798.1| response regulator protein [Burkholderia pseudomallei K96243] gi|52428479|gb|AAU49072.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|124291505|gb|ABN00774.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126219790|gb|ABN83296.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126226313|gb|ABN89853.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|126241129|gb|ABO04222.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|147745324|gb|EDK52404.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|147750666|gb|EDK57735.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|148029397|gb|EDK87302.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|157935241|gb|EDO90911.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|160697843|gb|EDP87813.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|184212141|gb|EDU09184.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|254220277|gb|EET09661.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 220 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR- 118 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + R+E+ G + + + G L RE +LE L+A G ++K+Q+ Sbjct: 119 --QSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 177 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 216 >gi|238792116|ref|ZP_04635752.1| Transcriptional regulatory protein baeR [Yersinia intermedia ATCC 29909] gi|238728747|gb|EEQ20265.1| Transcriptional regulatory protein baeR [Yersinia intermedia ATCC 29909] Length = 239 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 2/158 (1%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G + + R IR S VP++ ++ L + G DD + KP RE++ARV Sbjct: 63 LMLPGSDGITICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARV 122 Query: 113 AAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 I RR + + +ET P+ + QG L E R+L+ L G ++ Sbjct: 123 KTILRRCRPLPQQPSETVPLLIDESRFQASYQGHSLELTPAEFRLLKILATQPGHVFSRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 Q+ + +Y + V + ++SHI LR+KL + G P Sbjct: 183 QLLNNLYDDY-RVVTDRTIDSHIKNLRRKLESLDGEKP 219 >gi|332886069|gb|EGK06313.1| hypothetical protein HMPREF9456_00187 [Dysgonomonas mossii DSM 22836] Length = 228 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 7/140 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 + + +P++ ++ + L F G DD ++KP +E++AR+ A+ +RL+V N E Sbjct: 69 KEGNNIPIVFLTAKDTENDMLTGFSVGGDDYISKPFSIKEVIARIKAVVKRLEVKKNTKE 128 Query: 128 TGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + F+ D ++ V GE L + E IL L N K ++ I ++ Sbjct: 129 STTELTFAGIVINMDKKELTVDGEKVALTKTEFEILALLATNVDKVFSREDIIQTVWRE- 187 Query: 182 DEAVEENVVESHISKLRKKL 201 + E V+ HI++LRKK+ Sbjct: 188 TPYITERTVDVHIARLRKKM 207 >gi|306829063|ref|ZP_07462253.1| response regulator [Streptococcus mitis ATCC 6249] gi|304428149|gb|EFM31239.1| response regulator [Streptococcus mitis ATCC 6249] Length = 225 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP + +LA+V + RR Sbjct: 67 IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + + D QGEV L + E +IL L + G VA+ + ++ D Sbjct: 127 SLLEYAGVILNTKSMDLHYQGEVLSLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLAGFIETKKGIGYGL 222 >gi|295706850|ref|YP_003599925.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] gi|294804509|gb|ADF41575.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] Length = 238 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 13/139 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKV---------SNNRAETGPIRVFSDGRDPEVQG 144 G DD + KP RE++ARV AI RR ++ R G +++ D + Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRTQIIAQENEQEEDGERIMIGDLKILPDHYEAYFNQ 155 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 E L +E +L YL +G+ + + Q+ SA++ +D A + +V+ HIS LR+K+ + Sbjct: 156 EQLELTPKEFELLLYLAKYKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLREKIEHN 214 Query: 205 LGFDPVDSK--RFLGYSID 221 PV K R LGY ++ Sbjct: 215 TR-KPVYIKTIRGLGYKLE 232 >gi|170690597|ref|ZP_02881764.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170145032|gb|EDT13193.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 340 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 5/141 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--- 121 R A + PLI I + FD+G DDVV P+ RE++ RV R+++ Sbjct: 66 RACYADRRAPLIVIGAGHDREAIARLFDAGADDVVLSPVDAREVMLRVHLALLRVQLQSA 125 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S++ E G R+ V G L RE I L + RG+ V++ QI A++ Sbjct: 126 DSSDTLECGAYRLDRRNCTVHVDGHAVRLTPREFAIAWLLFSRRGEYVSRRQIAGAVWSR 185 Query: 181 FDEAVEENVVESHISKLRKKL 201 ++ + +E HI KLRKKL Sbjct: 186 SEDIIGRT-LEQHIYKLRKKL 205 >gi|148253503|ref|YP_001238088.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405676|gb|ABQ34182.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 235 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 10/168 (5%) Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R Q+P+I ++ + +G DD + KP E+LARV + R Sbjct: 62 IELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLR 121 Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R S R T G I + + R G L E R+LE+ + + G+ ++ Q+ Sbjct: 122 R--ASPERLATVLSYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 180 LDSVWG-RDIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226 >gi|254296317|ref|ZP_04963774.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|157805706|gb|EDO82876.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] Length = 210 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 50 IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR- 108 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + R+E+ G + + + G L RE +LE L+A G ++K+Q+ Sbjct: 109 --QSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 166 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 167 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 206 >gi|329938083|ref|ZP_08287534.1| two component positive transcriptional regulator PhoP [Streptomyces griseoaurantiacus M045] gi|329302572|gb|EGG46462.1| two component positive transcriptional regulator PhoP [Streptomyces griseoaurantiacus M045] Length = 246 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 8/131 (6%) Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ------GEVFPL 149 DD + KP H E++ARV A+ RR + ++ P+R + D E G + L Sbjct: 117 DDYITKPFHIDEVVARVTAVLRRTRSADVLPHPPPLR-YGDLELDETTYCAHRAGRMVEL 175 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 E +L +L+ N G+ V K Q+ ++ E VVE++IS LR+KL LG Sbjct: 176 TPTEYALLRFLVRNGGRIVTKEQLLRHVWAYEHAPAESTVVETYISYLRRKL-APLGPPL 234 Query: 210 VDSKRFLGYSI 220 + ++R +GY + Sbjct: 235 ITTRRGVGYGL 245 >gi|269124841|ref|YP_003298211.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309799|gb|ACY96173.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 244 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 9/139 (6%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 + P++ ++ ++ + G DD V KP E++AR+ AI RR + AE P Sbjct: 87 THTPVLFLTARDAVGDRITGLTIGGDDYVTKPFSLEEVIARIHAILRRAR--GGAAEPSP 144 Query: 131 IRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 VF+D E EV+ L E ++L Y MAN G+ ++K QI ++ +D Sbjct: 145 RMVFADIELDEDSHEVWRAGKPISLSPTEFKLLRYFMANAGRVLSKAQILDHVWN-YDFR 203 Query: 185 VEENVVESHISKLRKKLRN 203 + +VES++S LR+K+ N Sbjct: 204 GDAGIVESYVSALRRKVDN 222 >gi|113867801|ref|YP_726290.1| response regulator [Ralstonia eutropha H16] gi|113526577|emb|CAJ92922.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 232 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 9/157 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L+ G LE+ R +RA + P++ ++ + + + G DD + KP E+ AR Sbjct: 54 LMLPGADGLEICRRLRAEPRYTPILMLTARSTELDRVLGLEMGADDYLTKPFSVLELTAR 113 Query: 112 VAAIYRRLKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 V AI+R + N GP + + D R+ V+G L +E ++L Y +N Sbjct: 114 VKAIFRLVDTLANPPSDGPRTVQVKALHIDIDKREVSVRGTPICLTAKEFQLLLYFASNP 173 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 G+ ++ Q+ ++G + + E+ V SHI++LR K+ Sbjct: 174 GRVFSRAQLLDQVWG-YSHSGYEHTVSSHINRLRAKI 209 >gi|121605996|ref|YP_983325.1| two component transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120594965|gb|ABM38404.1| two component transcriptional regulator, winged helix family [Polaromonas naphthalenivorans CJ2] Length = 219 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 83/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +RA + VP++ + ++ + D+G DD V KP E+LAR+ A+ RR Sbjct: 60 LDVLRALRARRASVPVLVATARDAVGDRIAGLDAGADDYVVKPYDIDELLARIRALLRR- 118 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S R E + + R+ V G+ L RE +LE L+A G +++ Q+ Sbjct: 119 --SAGRGEPVFEHKGVSLNPATREATVHGQPVSLSAREWAVLEPLLARPGAVLSRAQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ D+ V N VE +I +RKKL N D + + R LGY + Sbjct: 177 KLFSWKDD-VSSNAVEVYIHGVRKKLGN----DFIQTVRGLGYVV 216 >gi|116621283|ref|YP_823439.1| two component heavy metal response transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224445|gb|ABJ83154.1| two component heavy metal response transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 238 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 3/165 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VLE R +A P++ +S +L + + G DD + KP E+LARV A+ Sbjct: 59 GLQVLEKMRSRKAGP--PVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALL 116 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR + + R + + + R E L +E ILEY+M N+G+ +++T I Sbjct: 117 RRGQPTPERLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEH 176 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + + + N+V+ +I LR K+ ++ + + R +GY I+ Sbjct: 177 VWDMDYDGL-TNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIE 220 >gi|167561730|ref|ZP_02354646.1| DNA-binding response regulator [Burkholderia oklahomensis EO147] gi|167568964|ref|ZP_02361838.1| DNA-binding response regulator [Burkholderia oklahomensis C6786] Length = 220 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR- 118 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + R+E+ G + + + G L RE +LE L+A G ++K+Q+ Sbjct: 119 --QSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 177 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 216 >gi|148979669|ref|ZP_01815641.1| DNA-binding response regulator [Vibrionales bacterium SWAT-3] gi|145961646|gb|EDK26944.1| DNA-binding response regulator [Vibrionales bacterium SWAT-3] Length = 219 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 12/153 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P+I +S +L ++ ++G DD + KP E++AR+ A RR S + A I Sbjct: 73 TPVIILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGSAAPVLQIG 130 Query: 133 VFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 S D R +V QG+ L E +++ Y M N+ K +++T++ IY FD + N Sbjct: 131 DLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNQNKVISRTELVEHIYKQDFDR--DSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE I ++RKK+ K+ + + R LGY ++ Sbjct: 189 TVEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217 >gi|319760780|ref|YP_004124717.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330822700|ref|YP_004386003.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|317115341|gb|ADU97829.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329308072|gb|AEB82487.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 241 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 7/169 (4%) Query: 54 IGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 +G G VL R RA + P++ ++ + D+G DD + KP E+ AR+ Sbjct: 68 LGSGLAVL---RAARARGDRTPVLVLTARDRTHERIAGLDAGADDYLGKPYDLAEVEARL 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ RR + + +R G + + R + G LP RE +L LM G RV + Sbjct: 125 RALVRRSRGTQDRTVAGALVLDRHVRRFTLHGLPLELPAREFEVLWELMTPPG-RVVNKR 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 S FDE + +N +E+ IS+LRKKL + + R LGY ++ Sbjct: 184 TLSEKLSDFDETLGDNALEAFISRLRKKLAGSGAG--IRTLRGLGYMLE 230 >gi|219855601|ref|YP_002472723.1| hypothetical protein CKR_2258 [Clostridium kluyveri NBRC 12016] gi|219569325|dbj|BAH07309.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 237 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/221 (21%), Positives = 106/221 (47%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-AIEAFLIGKGEKVL 61 ++IDD +++ + +DG S+ F ++ + LQ E + + ++ + + Sbjct: 17 LVIDDDGYIRELICTVLKNDGFSV--FEAVNGRDALQKLGEEKIDLCVLDIMMPQMDGYE 74 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 ++ R + +P++ ++ L + F+ G DD + KP E+L R+ A+ RR K Sbjct: 75 FCKQVRRYYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLRRYKV 134 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V++ G + + E + +P +E +L L + GK +++ ++ ++GL Sbjct: 135 VASQTINIGNLAMDKSRYTVISNNENYDIPMKEFELLFMLGSYHGKTLSRNRLIEEVWGL 194 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D E ++ HI++LR++ + + + + R LGY ++ Sbjct: 195 -DFEGNERTLDVHINRLRERFPSHVYKFKITTIRGLGYRLE 234 >gi|146306491|ref|YP_001186956.1| two component transcriptional regulator [Pseudomonas mendocina ymp] gi|145574692|gb|ABP84224.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 223 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ ++P++ ++ ++ + + G DD + KP E+ ARV A+ RR + Sbjct: 63 LARLRDRGQRLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLG 122 Query: 123 NNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + V+ G R ++GE L RE+ +LE ++A G+ ++K Q+ + ++GL Sbjct: 123 GEQLQRCGDLVYDLGARRFSMKGEALSLTAREQAVLEAMIARPGRVMSKEQLAAQVFGL- 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + +E +I +LRKKL G V + R LGY ++ Sbjct: 182 DEDASPDAIEIYIHRLRKKLEGS-GVRIV-TFRGLGYLLE 219 >gi|119513152|ref|ZP_01632202.1| OmpR subfamily protein [Nodularia spumigena CCY9414] gi|119462202|gb|EAW43189.1| OmpR subfamily protein [Nodularia spumigena CCY9414] Length = 231 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 29/224 (12%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWL--QSSAREDVSAIEAFLIGKGEKVLELPR 65 + L+ + Y+ + DG E WL +S + AI +L+ + L+L + Sbjct: 18 QVLISERYVVDWVTDGT----------EAWLCIESQWTDYTVAIVDWLLPEMSG-LQLCQ 66 Query: 66 IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118 +R H +P++ ++ + + D+G DD + KP E+LAR+ A+ RR Sbjct: 67 KLRLHQNPLPVLMLTALGQPENRVAGLDAGADDYLVKPFVMEELLARLRALQRRSPQLQP 126 Query: 119 --LKVSNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 L V+ +T ++V SDG P V PL +E ++L YLM N + + +++ Sbjct: 127 STLTVAGFTLDTANNVLQVNSDGSTP----LVIPLTTKEFQLLMYLMQNPNRIIPGSKLR 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ + +E + NVV + + LR+KL N P+++ GY Sbjct: 183 QQLWDMDEEPI-SNVVAAQMRLLRRKLANYGCPCPIETVPGAGY 225 >gi|328883819|emb|CCA57058.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 247 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 22/222 (9%) Query: 18 LFGDDGVSLEGFNS--LEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLEL 63 L DD SL S L +E W SA + +A+ + ++ + + L Sbjct: 25 LVVDDEASLAELLSMALRYEGWQVRSAGDGAAALRSAREFRPDAVILDIMLPDVDGLSLL 84 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 RI R VP++ ++ +++ + +G DD V KP E++AR+ + RR + Sbjct: 85 GRIRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAAL 144 Query: 124 NRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R+E+ G + + D + G+ L E +L YLM N + ++K QI ++ Sbjct: 145 ARSESLLVVGDLTLDEDSHEVTRGGDSIHLTATEFELLRYLMRNPRRVLSKAQILDRVWS 204 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +D + NVVE +IS LR+K+ G P + ++R GY I Sbjct: 205 -YDFGGQANVVELYISYLRRKI--DAGRAPMIHTRRGAGYLI 243 >gi|313835591|gb|EFS73305.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928691|gb|EFS92522.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314970292|gb|EFT14390.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328908152|gb|EGG27911.1| response regulator [Propionibacterium sp. P08] Length = 226 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 11/201 (5%) Query: 27 EGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + + L++ +R + L+ G E+ R +R V +I ++ S Sbjct: 24 EGFEVDTATSGSDGLETYSRNGADIVLLDLMMPGLPGTEVCRQLRQRGNVRIIMVTARDS 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSDGRD 139 + + G DD V KP HRE++AR+ A+ RR ++VS + E +R+ + + Sbjct: 84 EIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGGPEIEVSPDVLEESGVRMDVERHE 143 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 V+G L +E +LE L+ N G+ + + + ++G D + ++ HI +LR Sbjct: 144 VSVEGTTVRLALKEFDLLEVLLRNAGRVMTRASLIDRVWG-ADYVGDTKTLDVHIKRLRA 202 Query: 200 KLRNKLGFDPV--DSKRFLGY 218 K+ K PV + R LGY Sbjct: 203 KI-EKDSSRPVRITTVRGLGY 222 >gi|227496786|ref|ZP_03927057.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226833702|gb|EEH66085.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 234 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 103/217 (47%), Gaps = 13/217 (5%) Query: 10 LVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L +DGY + +DG V++E FEE + E + + L+ E+ R IR Sbjct: 21 LRRDGYDVVEAEDGAVAVE-----LFEEAGRPGGGEPIDLVLLDLMLPRLSGTEVCRRIR 75 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNR 125 S VP+I ++ S + + G DD V KP +RE++ARV A+ RR + + Sbjct: 76 RSSNVPVIMLTAKDSEVDKIVGLEIGADDYVTKPYSYRELVARVHAVLRRTREEEPAEPV 135 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E G + + + + V GE +P RE +LE + N + + + QI ++G Sbjct: 136 LEAGRVSMDVERHEVRVDGEPIAMPLREFELLELFLRNADRVLTRGQIIDRVWG-AGYVG 194 Query: 186 EENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 + ++ H+ ++R K+ + DP + + R LGY + Sbjct: 195 DTKTLDVHVKRIRAKIEREPS-DPTLLVTVRGLGYKL 230 >gi|288905343|ref|YP_003430565.1| two-component response regulator [Streptococcus gallolyticus UCN34] gi|306831423|ref|ZP_07464581.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978330|ref|YP_004288046.1| transcriptional regulatory protein CiaR [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732069|emb|CBI13634.1| putative two-component response regulator [Streptococcus gallolyticus UCN34] gi|304426208|gb|EFM29322.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178258|emb|CBZ48302.1| Transcriptional regulatory protein CiaR [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 224 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K ++N + Sbjct: 73 TPVLIMTAKESLDDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKYNDNTLSYEEL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V + G+ L +E +L Y + N+ + K+QIF I+G FD +VVE Sbjct: 133 TVDTSTNTTIANGKEVELLGKEFDLLVYFLQNQNVILPKSQIFDRIWG-FDSDTTISVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + R +GY Sbjct: 192 VYVSKIRKKLKGTTFAKNLQTLRSVGY 218 >gi|229191256|ref|ZP_04318244.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228592271|gb|EEK50102.1| Two-component response regulator [Bacillus cereus ATCC 10876] Length = 228 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 7/146 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY--RRLKVS 122 R IR S VP+I ++ TL F+ G DD V KP +LAR + R + Sbjct: 66 RRIRKKSNVPIIMLTARVDEHDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYSSAA 125 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N AE + I V R + GE L E I+ YLM N+G +++ Q+ + I+ Sbjct: 126 NVPAEDTLTSSGIHVHFPSRTVTIDGEDINLTHTEFEIVTYLMRNQGIVISREQLINKIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNK 204 G ++ A ++ V SHI LR KL K Sbjct: 186 G-YEFAGDDRTVNSHIRNLRHKLGQK 210 >gi|225028279|ref|ZP_03717471.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353] gi|224954325|gb|EEG35534.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353] Length = 224 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 7/179 (3%) Query: 45 DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPS-LQTTLDFFDSGVDDVVNKP 102 D ++A L GK G +VL+ R + + V + D + T LDF G DD V KP Sbjct: 46 DAILLDAMLPGKDGFEVLKEIRSQKIETPVMFLTARDQTEDIVTGLDF---GADDYVVKP 102 Query: 103 IHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161 E+LAR+ I +R + E + + +D + G L +E ILEY++ Sbjct: 103 FSFEEVLARLRVIIKRSPQEHGTTYECADLLIDTDKKSVTRAGTDIELSPKEYAILEYMV 162 Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+ +++ QI S +GL D E N+++ +I LRKK+ + + + R +GY + Sbjct: 163 RNKNIALSRLQIESNAWGL-DFEDESNIIDVYIRYLRKKIDDDFDVKLIQTVRGIGYML 220 >gi|257068117|ref|YP_003154372.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558935|gb|ACU84782.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 229 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 20/220 (9%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 +L K+GY D+G+ +G + S+ D+ ++ L G E+ R IR Sbjct: 20 SLRKEGYEVAVADNGI--DGLR-------IFSAHGADLVLLDLMLPGMSGT--EVCREIR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 S VP+I ++ + + G DD V KP RE+LAR+ A+ RR S + Sbjct: 69 RTSSVPVIMLTAKDDEFDKVLGLELGADDYVTKPYSSRELLARIKAVLRRRHDSGEAEDD 128 Query: 129 GPIRVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 P+R D EV+G+ LP +E +LE L+ N + + + Q+ ++G + Sbjct: 129 APLRAAHLMMDVERHVVEVRGQEVALPLKEFELLEMLLRNVDRVLTRGQLIDRVWG-ANY 187 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221 + ++ H+ +LR K+ + +PV + R LGY + Sbjct: 188 VGDTKTLDVHVKRLRAKIEDD-PRNPVHLVTVRGLGYKFE 226 >gi|225375673|ref|ZP_03752894.1| hypothetical protein ROSEINA2194_01298 [Roseburia inulinivorans DSM 16841] gi|257437566|ref|ZP_05613321.1| DNA-binding response regulator ResD [Faecalibacterium prausnitzii A2-165] gi|225212443|gb|EEG94797.1| hypothetical protein ROSEINA2194_01298 [Roseburia inulinivorans DSM 16841] gi|257199873|gb|EEU98157.1| DNA-binding response regulator ResD [Faecalibacterium prausnitzii A2-165] gi|295109640|emb|CBL23593.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 221 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLK 120 EL R IR S VP+I +S ++ F G DD + KP E+LAR+ + R K Sbjct: 62 ELIRTIRKFSNVPVIVVSAKSLTFNKVELFRLGADDYLTKPFDLDELLARIERNLLRSQK 121 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N + G + + + + V E+ L +E ++LE L K +K ++ +I+ Sbjct: 122 CTPNLCLKFGELSIDTASKIVTVADEIIVLTAKEYQLLELLAKYPDKVFSKQNLYESIWQ 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 A + +V+ +HIS LRKKLR++ Sbjct: 182 E-PFARDNDVINTHISNLRKKLRSE 205 >gi|191173324|ref|ZP_03034854.1| heavy metal response regulator [Escherichia coli F11] gi|190906441|gb|EDV66050.1| heavy metal response regulator [Escherichia coli F11] Length = 239 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 58 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 117 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +++ S + L R+E ++L L + Sbjct: 118 FSFSELLARVRAQLRQHHALNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLAS 177 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 178 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 233 >gi|28207681|gb|AAO32359.1| LanI [Streptomyces cyanogenus] Length = 261 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 4/143 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA SQ P+I ++ S + +G DD + KP RE++AR+ AI RR++ Sbjct: 101 EVCRNIRASSQTPVIAVTARESELDRVLVLQAGADDCMTKPYGIRELMARMDAIMRRIQP 160 Query: 122 S---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E P+R+ + R+ + G + + R+E +L L + + + Q+ + ++ Sbjct: 161 QWPLEQVIEHWPLRIDVNSREVRLDGRLIEVTRKEFDLLHLLASWPDTVIPRQQLTAQVW 220 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G + +++H+S LR KL Sbjct: 221 G-DSVPLRGRTIDTHVSSLRSKL 242 >gi|322372348|ref|ZP_08046884.1| DNA-binding response regulator DltR [Streptococcus sp. C150] gi|321277390|gb|EFX54459.1| DNA-binding response regulator DltR [Streptococcus sp. C150] Length = 228 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 65/119 (54%), Gaps = 14/119 (11%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS------DGRDPE-VQ 143 D+G DD + KP+ +E+LAR+ ++ RR +ET +V + D D E V Sbjct: 93 LDAGADDYLTKPMSLKELLARLRSLERRF------SETFTTKVLTLGSVCLDQEDQELVA 146 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 G L RE +++ Y M N K+++ +F I+ D+ V+E++V +IS LR+KL+ Sbjct: 147 GNSIRLSSRETKLMAYFMHNPTKKLSTEHLFKTIWADEDD-VDESIVWVYISYLRQKLQ 204 >gi|229163581|ref|ZP_04291530.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] gi|228619831|gb|EEK76708.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] Length = 239 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 12/139 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNR--AET--------GPIRVFSDGRDPEVQ 143 G DD + KP RE++ARV AI RR K+ AE +++ + + Q Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVAEAPDEDSILIAELKILPEFYEAYFQ 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202 G L +E +L YL N+ + + + Q+ SA++ +D A + +V+ HIS LR K+ + Sbjct: 156 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEK 214 Query: 203 NKLGFDPVDSKRFLGYSID 221 N + + R LGY ++ Sbjct: 215 NTKKPTYIKTIRGLGYKLE 233 >gi|152984853|ref|YP_001347435.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|150960011|gb|ABR82036.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 272 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 2/150 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 Q P++ ++ +LQ LD FD+G DD + KP E+L R+ A+ RR R + + Sbjct: 123 QTPVLMLTALDTLQDKLDGFDAGADDYLLKPFELPELLVRLQALSRRRSGQAQRLQVDDL 182 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + D R G L +ILE LM V + Q+ +++G DE E N + Sbjct: 183 VMDLDSRQVSRGGTPLALSPTAWKILECLMRASPALVTREQLGRSVWG--DEPPESNTLN 240 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 H+ LR + + + +G+ ++ Sbjct: 241 VHMHHLRSTVDKGFATPLIHTLHSVGFQLE 270 >gi|238783526|ref|ZP_04627548.1| Transcriptional regulatory protein basR/pmrA [Yersinia bercovieri ATCC 43970] gi|238715581|gb|EEQ07571.1| Transcriptional regulatory protein basR/pmrA [Yersinia bercovieri ATCC 43970] Length = 220 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/221 (23%), Positives = 107/221 (48%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L++ G +G + + + + L S++ + ++ L + VL Sbjct: 3 LLIVEDDELLQRGIAMALTSEGYACDCAGTAAEAQGLLQSSQYSMVILDLGLPDQDGAVL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L + R H +P++ ++ +L+ +D D+G DD + KP E+LARV A+ RR + Sbjct: 63 -LRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S+N + + + + +Q + + +E IL L+ G+ V + + +Y Sbjct: 122 QSDNLVQQDDLSLNLSTQQVWLQDQPLEITPKEFAILSRLIMRAGQTVNRELLQQDLYTW 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D+ + N +E HI LR+ KLG D + + R +GY ++ Sbjct: 182 NDD-LGSNTLEVHIHNLRR----KLGKDRIRTIRGVGYRLE 217 >gi|330821407|ref|YP_004350269.1| two component transcriptional regulator, winged helix family [Burkholderia gladioli BSR3] gi|327373402|gb|AEA64757.1| two component transcriptional regulator, winged helix family [Burkholderia gladioli BSR3] Length = 226 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 4/149 (2%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIR 132 P++ ++ + S++ + D G DD + KP E+ AR A+ RR R GP+ Sbjct: 74 PVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRRSNGHEQTRVACGPLE 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 S + GE L RER +LE L+ G+ + K + I+G+ DE+V + +E Sbjct: 134 FDSVDGGFRLAGEPLALTPRERAVLEVLILRNGRAINKEALSEKIFGI-DESVNADAIEI 192 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ +LR+KL + G V + R LGY ++ Sbjct: 193 YVYRLRRKLEGR-GVAIV-TLRGLGYLLE 219 >gi|293402308|ref|ZP_06646445.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304155|gb|EFE45407.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 224 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 3/160 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120 + R +R +S++P++ ++ S L + G DD V KP + + +LAR++ I +R Sbjct: 63 ICREVRKNSELPIMIVTSRDSDMDELISMNLGADDFVTKPYNLQILLARISRILQRSYEH 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S+N+ I + +G L + E RI+ L N+ K V++ ++ ++ Sbjct: 123 ASSNQLMIHDIVLDISKSTLNWKGNSVDLTKNELRIMHCLFQNKNKIVSRNELMQHMWDC 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V++N + +I++LRKKL D + +KR +GY I Sbjct: 183 -DLFVDDNTLTVNINRLRKKLEYLRLDDLIQTKRGMGYII 221 >gi|226199397|ref|ZP_03794955.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|225928473|gb|EEH24502.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] Length = 217 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 57 IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR- 115 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + R+E+ G + + + G L RE +LE L+A G ++K+Q+ Sbjct: 116 --QSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 173 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 174 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 213 >gi|167761616|ref|ZP_02433743.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704] gi|167660759|gb|EDS04889.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704] Length = 226 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 74/145 (51%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR SQVP+I ++ L F+ GVD+ ++KP + ++ARV AI RR Sbjct: 65 QTCREIRQSSQVPIIMLTARSEEHDELQGFELGVDEYISKPFSPKILVARVEAILRRSHA 124 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + G I + ++ L +E +L Y + N+G +++ +I + ++ Sbjct: 125 IGTGDVIDAGGIIIDKAAHQVKIDDTEIDLSFKEFELLAYFVENQGIALSREKILNNVWN 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR KL +K Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGDK 208 >gi|77917975|ref|YP_355790.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77544058|gb|ABA87620.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] Length = 224 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 3/170 (1%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G +E+ + IR S VP+I ++ L + G DD + KP RE++ARV Sbjct: 54 LMLPGRDGMEICKEIRGFSDVPIIMVTARIEEIDRLLGLELGADDYICKPFSPREVVARV 113 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ RR +N G + + + G L E ++L++L A+ G+ ++ Q Sbjct: 114 KAVLRRSGGQSNLHSQG-LTLEEASLHANLNGCKLDLTAVEFKLLQHLAAHPGRIFSREQ 172 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + IY V + ++SHI KLRKK+ G D + S +GY + Sbjct: 173 LMDRIYA-DRRIVSDRTIDSHIKKLRKKMDTASPGVDLIRSVYGVGYKFE 221 >gi|83594517|ref|YP_428269.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577431|gb|ABC23982.1| two component transcriptional regulator, winged helix family [Rhodospirillum rubrum ATCC 11170] Length = 229 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 69/132 (52%), Gaps = 6/132 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F++G DD V KP E++ R+ A+ RR + GP+R+ + V+G L Sbjct: 91 FEAGADDYVTKPFEMEEVVLRLKALIRRAAGHPSTELVAGPLRLDTTSGRGSVEGRPLDL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +IL YL+ +G+ V+++ I +Y D + NV++ + +LR+KL L Sbjct: 151 TAQEYKILTYLLLRQGQTVSRSDIVDHVYD-RDSDRDSNVIDVLVGRLRRKLGAPL---- 205 Query: 210 VDSKRFLGYSID 221 + + R LGY ++ Sbjct: 206 IHTVRGLGYRLE 217 >gi|77362080|ref|YP_341654.1| DNA-binding response regulator of two-component system [Pseudoalteromonas haloplanktis TAC125] gi|76876991|emb|CAI89208.1| DNA-binding response regulator of two-component system [Pseudoalteromonas haloplanktis TAC125] Length = 223 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 106/222 (47%), Gaps = 12/222 (5%) Query: 1 MFVL-IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGE 58 MFVL ++D ++ D G+++E ++L S+ D+ ++ L G G Sbjct: 1 MFVLLVEDDDVIADAICTYLTHQGLAVEHVSTLSAATTYMQSSNFDLCILDLNLPDGNGI 60 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L R R +P++ ++ ++ + G DD + KP RE+LAR+ ++ RR Sbjct: 61 NWLSWLRDSRF--SLPVLILTASNTIDDKVIGLKKGADDYLVKPFDLRELLARLLSLKRR 118 Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++SN G ++ + + G + L R E +L+ + + + + ++Q+ + Sbjct: 119 ASDRLSNTITH-GALQYDLEQHKALLNGTLVCLSRNEDLLLQTFLNSPQQILTQSQLKNV 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +YG+ D+ V N + HI LRK KLG +++ R LG+ Sbjct: 178 LYGVCDD-VASNALNVHIFNLRK----KLGAPAIETIRGLGF 214 >gi|327482737|gb|AEA86047.1| transcriptional regulatory protein TctD [Pseudomonas stutzeri DSM 4166] Length = 223 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 81/162 (50%), Gaps = 8/162 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ +P++ ++ + + + G DD + KP E+ ARV A+ RR Sbjct: 63 LARLRGRGKTLPVLMLTARGEVSDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVGG 122 Query: 123 NNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + V+ D R + E L RE+ +LE L+A G+ ++K Q+ + ++GL Sbjct: 123 GERQQRCGVLVYDLDARRFSLADEPLTLTSREQSVLEALIARPGRVMSKDQLAAQVFGL- 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221 DE + +E ++ +LRKKL + PV + R LGY ++ Sbjct: 182 DEDASADAIEIYVYRLRKKLEGQ----PVRIVTFRGLGYMLE 219 >gi|320533787|ref|ZP_08034383.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133992|gb|EFW26344.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 248 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 9/166 (5%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R H VP++ ++ +++ + +G DD V KP E++AR+ A+ RR Sbjct: 76 LEVMRRVRGHLPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRS 135 Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S + E G +R+ D + + L E +L YLM N + ++K QI Sbjct: 136 GASEEKPASLLEVGDLRMDEDSHEVWRGDDEIQLTATEFELLRYLMRNPRRVLSKPQILD 195 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 ++ +D + N+VE +IS LR+K+ G +P + + R +GY + Sbjct: 196 RVWN-YDFGGQANIVELYISYLRRKIDK--GREPMIHTMRGVGYVL 238 >gi|284045241|ref|YP_003395581.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949462|gb|ADB52206.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 245 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 3/140 (2%) Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKV 121 P R + +PL+ +S + L F+ G DDV+ KP + E+ AR+AA+ RR L+ Sbjct: 82 PVASRIDATLPLLVLSGRANELHRLRTFERGADDVLPKPFSYPELRARIAALLRRAELRT 141 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R G + V R + G PL ++E +L L + + K ++ ++G + Sbjct: 142 RRGRLRIGALEVDPAARTAHLHGRAVPLSQKEFGLLRTLASEATRVFTKDELLRNVWG-Y 200 Query: 182 DEAVEENVVESHISKLRKKL 201 ++SH +LR+KL Sbjct: 201 RNLGSTRTLDSHACRLRRKL 220 >gi|167574670|ref|ZP_02367544.1| DNA-binding response regulator [Burkholderia oklahomensis C6786] Length = 219 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 84/162 (51%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+ R +RA S VP+I ++ + + ++G DD + KP E+ ARV+A+ RR Sbjct: 60 LDFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLVKPFDLSELSARVSAVARRY 119 Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N + G + + + + L E +LE L+ + G ++K+Q+ + +Y Sbjct: 120 SGNPNPLVKLGELAIDTAVHSVKRGDARVDLTASEWALLETLIQHPGMILSKSQLEARLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE V N +E H+S+LRK KLG D +++ R LGY + Sbjct: 180 SFNDE-VGSNTIEVHVSRLRK----KLGADMIETVRGLGYRL 216 >gi|332533733|ref|ZP_08409591.1| two component transcriptional regulator, winged helix family protein [Pseudoalteromonas haloplanktis ANT/505] gi|332036788|gb|EGI73250.1| two component transcriptional regulator, winged helix family protein [Pseudoalteromonas haloplanktis ANT/505] Length = 224 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 7/165 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +L+ R + S+V ++ P Q + G DD + KP E+ ARV A+ Sbjct: 59 GMSILQALRSSNSQSRVLILSARSEP--QDKISGLMKGADDYLTKPFSFEELHARVLALL 116 Query: 117 RRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + N N G + + + L E +I+E L N +RV ++ Sbjct: 117 RRGSLQNQQNTLTVGDCVLDLSLKTLHYKQHAIELTPNEYKIIECLF-NAPERVLGLELI 175 Query: 175 S-AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 S A+ G FD + +N +E+HIS +RKK+R G P+ +KR GY Sbjct: 176 SEAVVGQFD-MLSKNALEAHISTIRKKVRQFDGELPIKNKRGFGY 219 >gi|300088022|ref|YP_003758544.1| winged helix family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527755|gb|ADJ26223.1| two component transcriptional regulator, winged helix family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 224 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LEL + IR S VP+I ++ + + G DD + KP E ++R A+ RR + Sbjct: 62 LELLKDIRQISSVPVIILTVRDEEADVVRGLELGADDYITKPFRQMEFVSRAKALLRRHQ 121 Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP++ + R G+ L E ++L L NRGK V+ I +AI+ Sbjct: 122 AGDTSLPVTIGPLQFSASRRKITADGKTIKLTATEGKMLYLLARNRGKAVSHDAISNAIW 181 Query: 179 G--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G + D A N + H+ LR+KL+ D + ++ GY Sbjct: 182 GEKIPDAA---NSIRVHMRNLRQKLQKIDMGDIIATRSGAGY 220 >gi|269837466|ref|YP_003319694.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269786729|gb|ACZ38872.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 254 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 20/158 (12%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------------LKV 121 PLI +S+ S + + F+ G DD + +P E++ARV A+ RR LKV Sbjct: 74 PLIFVSEQGSTRAKVRAFEHGADDFIVEPYDPAELVARVGAVARRCQRADYQAMGTVLKV 133 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + V GR+P + L E R+LE LM N +++ + +G + Sbjct: 134 GDVELAIGELTVRVAGREPVL------LTPTEMRLLECLMRNSQITISRETLIERTWG-Y 186 Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218 D E N V+ +IS+LRKKL R+ + + + R +GY Sbjct: 187 DFVGESNRVDVYISRLRKKLERDPAAPEYLHTVRGVGY 224 >gi|239942785|ref|ZP_04694722.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239989244|ref|ZP_04709908.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 248 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 100/209 (47%), Gaps = 22/209 (10%) Query: 31 SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78 +L +E W SA + +A+ A ++ + + L R+ R ++ VP++ + Sbjct: 39 ALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVMLPDMDGLAVLGRLRREYADVPVLFL 98 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAET----GPIR 132 + +++ + +G DD V KP E++AR+ + RR V+ R E+ G + Sbjct: 99 TARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGSAVAAGRGESTLTVGDLV 158 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + D + GE + E +L +LM N + ++K QI ++ +D + NVVE Sbjct: 159 LDEDSHEVWRGGEAIHVTATEFELLRFLMRNPRRVLSKAQILDRVWN-YDFGGQANVVEL 217 Query: 193 HISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +IS LRKK+ G P + ++R GY I Sbjct: 218 YISYLRKKI--DAGRTPMIHTRRGAGYLI 244 >gi|169335564|ref|ZP_02862757.1| hypothetical protein ANASTE_01979 [Anaerofustis stercorihominis DSM 17244] gi|169258302|gb|EDS72268.1| hypothetical protein ANASTE_01979 [Anaerofustis stercorihominis DSM 17244] Length = 226 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 106/228 (46%), Gaps = 26/228 (11%) Query: 14 GYIALFGDDG-------VSLEGFNS----LEFEEWLQSSARED---VSAIEAFLIG-KGE 58 YI + DD SLE FN E E + + +E+ + ++ L G G Sbjct: 3 NYIYVVEDDNNISELLKCSLEAFNYYVKVFENCEDMMIALKEEKPKLMLLDIMLPGMSGI 62 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L+L + + +P+I +S S ++ + G DD V KP E+ +R+ ++ RR Sbjct: 63 DALKLLKNSNKYKSIPIIILSAKSSEIDKVNALELGADDYVTKPFSVLELSSRIKSVLRR 122 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 KV +N I + + GE L ++E +IL Y++ N+G+ V + ++ + + Sbjct: 123 SYKVEDNILNYKDITIDKENYLVSHDGEEVILTKKEYKILLYMLENKGRVVTREELLNEV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-----FDPVDSKRFLGYSI 220 +G +D E ++ H+ K LRNK+G + + + R +GY + Sbjct: 183 WG-YDFEGESRTLDMHM----KTLRNKIGSEDDKYKYIKTIRGIGYKL 225 >gi|160946255|ref|ZP_02093466.1| hypothetical protein PEPMIC_00217 [Parvimonas micra ATCC 33270] gi|158447778|gb|EDP24773.1| hypothetical protein PEPMIC_00217 [Parvimonas micra ATCC 33270] Length = 226 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 4/172 (2%) Query: 52 FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 ++ K + + L I + +P+I ++ L+ + D G DD + KP +E+LAR Sbjct: 52 IMMPKVDGITVLKTIRENGNSIPVIMLTAKSELEDKVIGLDCGADDYLTKPFEVKELLAR 111 Query: 112 VAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + AI RR + V++N G I + + + + L +E ++LE LM+ ++ Sbjct: 112 LRAITRRKETVTDNVLTFGNITLNRTNFELSSEKGSYKLTNKEFQMLEMLMSTPSNIISA 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 I+G +D + +VV +IS LRKKL KL D + R +GYS++ Sbjct: 172 DTFMDKIWG-YDTDSDISVVWVYISYLRKKLA-KLDADVEIKVTRNVGYSLE 221 >gi|157146166|ref|YP_001453485.1| DNA-binding transcriptional regulator PhoP [Citrobacter koseri ATCC BAA-895] gi|157083371|gb|ABV13049.1| hypothetical protein CKO_01922 [Citrobacter koseri ATCC BAA-895] Length = 224 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 104/218 (47%), Gaps = 5/218 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ + ++ + D++ ++ L E L Sbjct: 5 LVVEDNALLRHHLKVQLQDLGHQVDDAEDAKEADYYLNEHLPDIAIVDLGL--PDEDGLS 62 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R++ +P++ ++ Q ++ +G DD V KP H E++AR+ A+ RR Sbjct: 63 LIRRWRSNDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVVARMQALMRRNSG 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ V EV L E I+E L+ N GK V+K + +Y Sbjct: 123 LASQVISIPPFQVDLSRRELSVNDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E E + ++ + +LRKK++ + D + + R GY Sbjct: 182 DAELRESHTIDVLMGRLRKKIQARYPDDVITTVRGQGY 219 >gi|197119661|ref|YP_002140088.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197089021|gb|ACH40292.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 223 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 2/145 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G LE+ + IR SQ+P+I I+ L + G DD + KP RE++ARV + Sbjct: 58 GRDGLEICKEIRTFSQLPIIMITARVEEIDRLLGLELGADDYICKPFSPREVVARVKTVL 117 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR A+T + + +D G L E ++L +L N G+ +++Q+ Sbjct: 118 RRTG-EQAPAQTHGLTLDADRYLALFHGHDLELTVVEFKLLHFLYQNPGRIYSRSQLMDR 176 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 IY V + ++SHI KLRKK+ Sbjct: 177 IYS-DQRIVSDRTIDSHIKKLRKKI 200 >gi|70733391|ref|YP_263166.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas fluorescens Pf-5] gi|330806802|ref|YP_004351264.1| phosphate regulon response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|68347690|gb|AAY95296.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas fluorescens Pf-5] gi|327374910|gb|AEA66260.1| Phosphate regulon response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 229 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 24/213 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 +++DD A +++ IA+ + + G++ +E E Q+ A + D+ ++ L Sbjct: 6 ILIVDDEAPIRE-MIAV----ALEMAGYDCMEAENSQQAHAIIVDRKPDLILLDWML--P 58 Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ +P+I ++ + + G DD + KP RE++AR+ Sbjct: 59 GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR ++ A PI V DP + G+ + E R+L++ M ++ + Sbjct: 119 AVLRRAGPTDGEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ ++G + VEE V+ HI +LRK L Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207 >gi|297624289|ref|YP_003705723.1| winged helix family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165469|gb|ADI15180.1| two component transcriptional regulator, winged helix family [Truepera radiovictrix DSM 17093] Length = 236 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 101/207 (48%), Gaps = 15/207 (7%) Query: 23 GVSLEGF---NSLEFEEWLQSSARE--DVSAIEAFLIGK-GEKVLELPRIIR-AHSQVPL 75 G+ EGF + E L+ A+E DV ++ L G G +VLE R +V + Sbjct: 32 GLGFEGFEVVTAASASEGLRLFAQEAIDVVILDILLPGSDGYRVLEAIRTPHNPKREVAV 91 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS 135 + ++ +++ + G DD + KP E++AR+ A++RRL+ +R++ Sbjct: 92 LFLTALDTIEDRVRGLRLGADDYLVKPFSLAELVARIEALWRRLQRPVTALCAADVRLYP 151 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 D R+ G L +E +L+ L+ +R + V++ + ++G E V+ N +E H+S Sbjct: 152 DKREAWRGGVPLELAPKEFALLQVLLEHRARVVSREALMQRLWG---ERVDPNTLEVHVS 208 Query: 196 KLRKKLRNKLGFDP-VDSKRFLGYSID 221 LR+ LG P + + R GY +D Sbjct: 209 SLRR----ALGDPPMIRTVRGYGYLLD 231 >gi|295688443|ref|YP_003592136.1| winged helix family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430346|gb|ADG09518.1| two component transcriptional regulator, winged helix family [Caulobacter segnis ATCC 21756] Length = 223 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 11/170 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +V+E R R Q P++ +S + + +G DD + KP E++ARV A+ Sbjct: 59 GVQVVETLR--REGDQTPVLFLSALGEINDRVTGLRAGADDYLVKPYAFPELMARVEALS 116 Query: 117 RRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + + G + + R QG+ L RE ++LE++M + G+ V +T + Sbjct: 117 RRRETGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLL 176 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221 ++ FD + NV++ HIS+LR K+ GFD + + R GY +D Sbjct: 177 EKVWEYHFDP--QTNVIDVHISRLRSKIDK--GFDRAMLQTVRGAGYRLD 222 >gi|238059275|ref|ZP_04603984.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237881086|gb|EEP69914.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 230 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 10/133 (7%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFP 148 G DD V KP E++ARV A+ RR+ S TG +R D E G + Sbjct: 98 GGDDYVTKPFSVEELVARVRAVLRRIG-STPVPATGVLRYADLELDEETCEVRRGGRLLS 156 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGF 207 L E ++L +LM N G+ +++ QI A++ FD A NVV+++I LR+KL + LG Sbjct: 157 LSPTEYKLLRHLMLNPGRVLSRAQILDAVWRYDFDGA--SNVVDTYIGYLRRKL-DPLGP 213 Query: 208 DPVDSKRFLGYSI 220 ++++R GY++ Sbjct: 214 PLIETRRGFGYAL 226 >gi|209523018|ref|ZP_03271575.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209496605|gb|EDZ96903.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 231 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 104/217 (47%), Gaps = 16/217 (7%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + LV + YI + DGV + ++ LE +W + AI +L+ + LEL + I Sbjct: 18 QVLVNEKYIVDWVTDGV--QAWHCLE-SQWTDYTV-----AILDWLVPELSG-LELCQRI 68 Query: 68 RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R+H +P++ ++ + + FD+G DD + KP E+LAR+ A+ RR + Sbjct: 69 RSHQNPLPILMLTALGQPENRITGFDAGADDYLVKPFVMAELLARLRALQRRSPTLQPQT 128 Query: 127 ETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 T + + ++ PL +E +I YLM N + + ++I ++ L Sbjct: 129 LTVGAFMLDYANNTICNRLTQPPKMIPLTVKEFQIFAYLMQNPDRIIPGSKIRYQLWDLE 188 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E + NVV + + LR+KL + P+++ R GY Sbjct: 189 EEPI-SNVVAAQMRLLRRKLASYDCGCPIETIRGQGY 224 >gi|134294163|ref|YP_001117898.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134137320|gb|ABO53063.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 225 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 7/219 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D A + + L + +++ E + + + R D ++ L G G++V Sbjct: 3 LLLVEDNAELAHWIVNLLRGEDFAVDCVGDGERADTVLKTERYDAVLLDMRLPGISGKEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R+ R + VP++ ++ + S+ +D F +G DD V KP RE++AR+ A+ RR Sbjct: 63 L--ARLRRRNDNVPVLMLTAHGSVDDKVDCFGAGADDYVVKPFESRELVARIRALIRRRA 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V + G + R+ + L RRE ILE LM + K V+K ++ +++ Sbjct: 121 GVGTAQLVCGDLVYAFGTREFRCGDALLALRRREHAILETLMLQQSKTVSKARLMDSVFA 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L DE + ++ +I +LRK L + + R LGY Sbjct: 181 LDDEP-SADAIDIYIHRLRKHLAGSTA--EIITLRGLGY 216 >gi|123441447|ref|YP_001005434.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088408|emb|CAL11200.1| two-component system response regulator [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 239 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 9/182 (4%) Query: 36 EWLQSSA------REDVSAIEAF-LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88 +WL + A R+ AI L+ G + + R IR S VP++ ++ L Sbjct: 39 QWLTNGAEVVAAVRQSPPAIILLDLMLPGSDGISICREIRRFSDVPIMMVTAKTEEIDRL 98 Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVF 147 + G DD + KP RE++ARV I RR + + +E+ P+ + QG + Sbjct: 99 LGLEIGADDYICKPYSPREVVARVKTILRRCQQQREQPSESAPLIIDESRFQASYQGHLL 158 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E R+L+ L G ++ Q+ + +Y + V + ++SHI LR+KL G Sbjct: 159 ELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY-RVVTDRTIDSHIKNLRRKLEALDGE 217 Query: 208 DP 209 P Sbjct: 218 KP 219 >gi|91792622|ref|YP_562273.1| response regulator receiver [Shewanella denitrificans OS217] gi|91714624|gb|ABE54550.1| two component transcriptional regulator, winged helix family [Shewanella denitrificans OS217] Length = 243 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 2/149 (1%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132 P++ ++ S Q + D+G DD + KP H E+LAR+ A+ RR +++ GP Sbjct: 74 PILVLTARDSWQDKVSGLDAGADDYLTKPFHPEELLARMKALIRRAAGKASSLVSNGPFS 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 V + + + L E ++ E+LM + G+ +K+ + IY D ++ NV+E Sbjct: 134 VNLTSLEVKRHEVLVNLSSSEYKLFEFLMLHPGEVQSKSVLTEHIYDQ-DFDLDSNVIEV 192 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I +LRKKL + +++ R GY ++ Sbjct: 193 FIRRLRKKLDPDNQYQLIETLRGQGYRLN 221 >gi|27378858|ref|NP_770387.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27352007|dbj|BAC49012.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 224 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/210 (29%), Positives = 102/210 (48%), Gaps = 29/210 (13%) Query: 28 GFNSLEFEEWLQSSA---REDVSAIE-AFLI-------GKGEKVLELPRIIRAHSQVPLI 76 G ++ +E + SSA RE V ++ A +I G G VL R R +P++ Sbjct: 19 GLSAAGYESDIVSSAAEAREAVGSVSYAAMILDLGLPDGDGLSVLRELR--RQMEPLPVL 76 Query: 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAET 128 ++ LQ ++ SG DD + KP E++AR+ AI RR L+++N +T Sbjct: 77 VLTARGGLQDRVNGLRSGADDYLAKPFAMEELVARLEAILRRPGQLLGRSLRLANLVYDT 136 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 ++F D + P + + RE +LE L+ +G+ V K + I+GL E V N Sbjct: 137 ESRQIFIDDQ-PRI------ISAREASVLEILLRRQGRVVPKKNVEDHIFGLEGE-VASN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VE ++S+LRK+L + + R +GY Sbjct: 189 AVEVYVSRLRKQLTEHGAKVVIHTIRGVGY 218 >gi|320449473|ref|YP_004201569.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermus scotoductus SA-01] gi|320149642|gb|ADW21020.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermus scotoductus SA-01] Length = 225 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 97/202 (48%), Gaps = 14/202 (6%) Query: 23 GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDY 81 G E + + E+ L+ R D+ ++ L G KVLE + R ++P++ ++ Sbjct: 22 GAGFEVLEAKDGEKALELFPRADLIILDLMLPKLDGFKVLE--EVRRERPELPILMLTAR 79 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE 141 + + + G DD V KP +E++ARV A+ RR + GP+R+ R Sbjct: 80 GEEEERVKGLELGADDYVVKPFSPKEVVARVKALLRRAGLKEELC-YGPLRLLPKERQAY 138 Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G+ PL + E +L L + G + ++ ++G D + VV+ HI+ LRKKL Sbjct: 139 LEGKPLPLSQLEFDLLLTLAQHPGMVFTRERLLEKVWG-PDFPGIDRVVDVHIAALRKKL 197 Query: 202 RNKLGFDP-----VDSKRFLGY 218 + DP +++ R +GY Sbjct: 198 MD----DPENPRFIETVRGVGY 215 >gi|332162605|ref|YP_004299182.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606705|emb|CBY28203.1| response regulator BaeR [Yersinia enterocolitica subsp. palearctica Y11] gi|325666835|gb|ADZ43479.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 239 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 9/182 (4%) Query: 36 EWLQSSA------REDVSAIEAF-LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88 +WL + A R+ AI L+ G + + R IR S VP++ ++ L Sbjct: 39 QWLTNGAEVVAAVRQSPPAIILLDLMLPGSDGISICREIRRFSDVPIMMVTAKTEEIDRL 98 Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVF 147 + G DD + KP RE++ARV I RR + + +E+ P+ + QG + Sbjct: 99 LGLEIGADDYICKPYSPREVVARVKTILRRCQQQREQPSESAPLIIDESRFQASYQGHLL 158 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E R+L+ L G ++ Q+ + +Y + V + ++SHI LR+KL G Sbjct: 159 ELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY-RVVTDRTIDSHIKNLRRKLEALDGE 217 Query: 208 DP 209 P Sbjct: 218 KP 219 >gi|215482948|ref|YP_002325153.1| Transcriptional activator protein irlR [Acinetobacter baumannii AB307-0294] gi|301510477|ref|ZP_07235714.1| putative two component heavy metal response transcriptional regulator [Acinetobacter baumannii AB058] gi|213989068|gb|ACJ59367.1| Transcriptional activator protein irlR [Acinetobacter baumannii AB307-0294] Length = 223 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 83/160 (51%), Gaps = 8/160 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123 +++R S++P+I ++ + + + G DD + KP + E+LAR+ ++ RR + + Sbjct: 64 QVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQYLQE 123 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182 N +++ G G + L + E +L YL+ N+ + V + QI S ++ + FD Sbjct: 124 NELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWNINFD 183 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 + N ++ + +LR K+ G++P + + R LGY I Sbjct: 184 --TDTNFIDVAVRRLRSKIDE--GYEPKLIHTIRGLGYKI 219 >gi|182419726|ref|ZP_02950967.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237665523|ref|ZP_04525511.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376463|gb|EDT74044.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237658470|gb|EEP56022.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 223 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 4/162 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR HS +P+I ++ + L F+ G D+ + KP + +AR+ I +++K Sbjct: 63 FEVLKEIREHSDIPIIMLTALGDEKHELLGFNKGADEYIGKPFSYEVFIARLNNIAKKIK 122 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + T G I + G L +E +L Y + N K + + QI ++++G Sbjct: 123 HDTEKEITYGKIIINQSNHKVISNGLEIKLNHKEYTLLIYFIKNSSKVLTREQILNSVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + +++HI LR KL+ + + + + R GY I+ Sbjct: 183 -YDFDGDIRTIDTHIKTLRAKLKTEGTY--IKTVRGCGYMIE 221 >gi|167579987|ref|ZP_02372861.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] gi|167618057|ref|ZP_02386688.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] gi|257140105|ref|ZP_05588367.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR- 118 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + R+E+ G + + + G L RE +LE L+A G ++K+Q+ Sbjct: 119 --QSGRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 177 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 216 >gi|229543190|ref|ZP_04432250.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229327610|gb|EEN93285.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 232 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 99/203 (48%), Gaps = 19/203 (9%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85 + N LE E+W D+ ++ + G +VL R+ +S+ P+I ++ S+ Sbjct: 36 QALNLLESEDW-------DLVLLDVMIPCLSGLEVLRRYRM--RNSRTPVILLTARNSVL 86 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP--------IRVFSDG 137 ++ D G +D + KP + E+LAR+ A R + ++E + V + Sbjct: 87 DKVNGLDHGANDYITKPFNIEELLARIRAALRTGALHTGKSENSKKHEYALADLLVNTAT 146 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 R G+ L +RE +L YL+ N+ + + Q+ + ++G F+ A + NVV+ +I L Sbjct: 147 RQVTRGGKPIELTKREFDLLCYLLKNKRIVLNREQLLNEVWG-FEYAGDTNVVDVYIGYL 205 Query: 198 RKKLRNKLGFDPVDSKRFLGYSI 220 RKK+ + + + R +GY++ Sbjct: 206 RKKIDHGHETALIHTVRGVGYTM 228 >gi|104784065|ref|YP_610563.1| DNA-binding response regulator CreB [Pseudomonas entomophila L48] gi|95113052|emb|CAK17780.1| two-component response regulator CreB [Pseudomonas entomophila L48] Length = 226 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 3/160 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R +R S+VP++ +S + + + G DD V KP RE+ ARV AI +R+ Sbjct: 62 ETCRQLRRFSEVPVMFLSARDAEIDRVLGLEIGADDYVVKPFSPREVAARVRAILKRMAP 121 Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 AE P ++ + +G+ L R E R+L+ L+ + ++ Q+ + G+ Sbjct: 122 RPEPVAEVAPFQLDTLAMRIVYRGQPLALTRHEFRLLQCLLEQPRRVFSREQLLDGL-GV 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 + E ++SHI LR KLR +P+ + R LGYS Sbjct: 181 ASDVGYERTIDSHIKSLRAKLRLVASEAEPIQTHRGLGYS 220 >gi|299138867|ref|ZP_07032044.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298599021|gb|EFI55182.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 227 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 8/157 (5%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + I+A S P+I +S + + ++G DD V KP RE+LARV A RR + Sbjct: 62 EVCKEIKAWSPDTPVIILSAISEVADKVLLLETGADDYVTKPFSPRELLARVQAAMRRTR 121 Query: 121 VSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + V D EV G + PL E ++L + + N G+ +A+ ++ S ++ Sbjct: 122 RTVQEPPLNFGNVTVDFLKMEVYKAGSLVPLTAHEFKLLRFFLDNPGRAIARDELLSGVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 GL + + V++ I KLR+KL DP + F Sbjct: 182 GL-NFHLTTRTVDNQILKLRQKLEA----DPANPVHF 213 >gi|295693362|ref|YP_003601972.1| response regulator [Lactobacillus crispatus ST1] gi|295031468|emb|CBL50947.1| Response regulator [Lactobacillus crispatus ST1] Length = 238 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 12/194 (6%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L+ + +D AI L+ LE+ R +R P+I ++ S+ + D G DD Sbjct: 38 LEDALSQDFDAILLDLMLPDLNGLEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPIRVFSDGRDPEVQ----------GEV 146 + KP E+LAR+ A+ RR+K+ + ++ T + +D ++ G+ Sbjct: 98 YIVKPFAIEELLARLRAVLRRVKIEKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKA 157 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L +RE +L L+ N+ V++ Q+ + I+G + +E NVVE ++ LR K+ Sbjct: 158 IDLTKREYNLLMTLIENKNNVVSRDQLLNKIWG-PESNIETNVVEVYVRYLRNKIDTPGQ 216 Query: 207 FDPVDSKRFLGYSI 220 + + R GY + Sbjct: 217 PSYIKTVRGTGYMV 230 >gi|294501502|ref|YP_003565202.1| two-component response regulator PhoP [Bacillus megaterium QM B1551] gi|294351439|gb|ADE71768.1| two-component response regulator PhoP [Bacillus megaterium QM B1551] Length = 238 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 11/138 (7%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKV---------SNNRAETGPIRVFSDGRDPEVQG 144 G DD + KP RE++ARV AI RR ++ R G +++ D + Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRTQIIAQENEQEEDGERIMIGDLKILPDHYEAYFNQ 155 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RN 203 E L +E +L YL +G+ + + Q+ SA++ +D A + +V+ HIS LR+K+ +N Sbjct: 156 EQLELTPKEFELLLYLAKYKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLREKIEQN 214 Query: 204 KLGFDPVDSKRFLGYSID 221 + + R LGY ++ Sbjct: 215 TRKPVYIKTIRGLGYKLE 232 >gi|317132810|ref|YP_004092124.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315470789|gb|ADU27393.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 225 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 13/167 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + IRA S VP++ ++ T+ D G DD V KP +L+R+ A RR Sbjct: 61 DLCKEIRAFSDVPILFLTSCDDEANTITALDGGGDDYVTKPFKLDVLLSRIRAHLRR--- 117 Query: 122 SNNRAETGPIRVFSDG-RDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIF 174 R P F G R + QG F L E R+L L N G + + Q+ Sbjct: 118 ---RNTQPPQAPFCGGVRLDDAQGRAFAAEQDLRLTLTEYRLLSLLTRNAGLILKRGQLL 174 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++ + V++N + HI LR+KL + + R LGY ++ Sbjct: 175 DALWDGKGDFVDDNTLSVHIRHLREKLSTAGSGVSIRTVRGLGYRLE 221 >gi|256820277|ref|YP_003141556.1| two component transcriptional regulator, winged helix family [Capnocytophaga ochracea DSM 7271] gi|256581860|gb|ACU92995.1| two component transcriptional regulator, winged helix family [Capnocytophaga ochracea DSM 7271] Length = 223 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 10/154 (6%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G ++L+ R ++ + V +I D S++ + + G DD + KP H E+LARV + Sbjct: 57 GSGMQLLDELRAMKKNHSVLIISAKD--SVEDKVLGLEKGADDYLAKPFHLAELLARVKS 114 Query: 115 IYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 I RR N + E ++ F + R +V L R+E +L Y + + V K Sbjct: 115 IIRR---KNQQGEEVITLKNVQFFPETRTVKVGDTTLTLNRKEYDLLYYFIIRPERLVEK 171 Query: 171 TQIFSAIYGLFDEAVEE-NVVESHISKLRKKLRN 203 T + A++G + + V+ + + S I LRKKL+ Sbjct: 172 TTLAEAVWGDYIDQVDSLDFIYSQIKNLRKKLKT 205 >gi|228913340|ref|ZP_04076973.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846249|gb|EEM91268.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 225 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTTDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQHAQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D+ K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220 >gi|262203938|ref|YP_003275146.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087285|gb|ACY23253.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 231 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 10/155 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + VP+I +S + D+G DD V KP E LAR+ A RR VS+ Sbjct: 70 LRGWTTVPVIVLSARSDAADKVSALDAGADDYVTKPFGMEEFLARLRAAVRRGAVSSGLP 129 Query: 127 E-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 E G +V + GE L E ILE L+ N GK V++ +I ++++G Sbjct: 130 EVPMVDAGSFQVDLAAKQVTRHGERIHLTPTEWEILEILVRNEGKLVSQKEILNSVWGPT 189 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + N + +++ LR+KL + DPV + + Sbjct: 190 YLG-QSNYLRVYLASLRRKLED----DPVHPRHLI 219 >gi|184158807|ref|YP_001847146.1| response regulator [Acinetobacter baumannii ACICU] gi|332875177|ref|ZP_08443010.1| putative transcriptional regulatory protein QseB [Acinetobacter baumannii 6014059] gi|183210401|gb|ACC57799.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|322507380|gb|ADX02834.1| Putative two-component response regulator [Acinetobacter baumannii 1656-2] gi|323518722|gb|ADX93103.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332736621|gb|EGJ67615.1| putative transcriptional regulatory protein QseB [Acinetobacter baumannii 6014059] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 8/165 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GEKVL R VP+I I+ S+ ++ D G +D + KP E+ AR+ A Sbjct: 59 GEKVLTTIR--HKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQL 116 Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+ ++ T G +++ + + G+ L +E +IL LM + + + Q+ Sbjct: 117 RKQTLNQQSILTWGDLQLDTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A+Y + E +E N +E I +LRK K+G + + R LGY + Sbjct: 177 ALYA-WGEEIESNAIEVFIYQLRK----KIGSSSIKTIRGLGYRM 216 >gi|291534760|emb|CBL07872.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 3/158 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IRA P++ ++ + ++ G DD ++KP E+ AR+ A RR Sbjct: 61 ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120 Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ R G + + + V + PL + E I E+L NRG+ +K QI ++G Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEEVFG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD ++ + +HI +R K + + P+ + +GY Sbjct: 180 FDSESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGY 216 >gi|288549514|ref|ZP_05967289.2| DNA-binding response regulator PhoP [Enterobacter cancerogenus ATCC 35316] gi|288318237|gb|EFC57175.1| DNA-binding response regulator PhoP [Enterobacter cancerogenus ATCC 35316] Length = 224 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%) Query: 58 EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 E L L R R+H +P++ ++ Q ++ +G DD V KP H E+ AR+ A+ Sbjct: 58 EDGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALL 117 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR +++ P +V R+ + EV L E I+E L+ N GK V+K + Sbjct: 118 RRNSGLASQVISLPPFQVDLSRREFSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLML 177 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y E E + ++ + +LRKK++ + D + + R GY Sbjct: 178 QLYP-DAELRESHTIDVLMGRLRKKIQAQYPQDVITTVRGQGY 219 >gi|283798526|ref|ZP_06347679.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1] gi|291073786|gb|EFE11150.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1] gi|295090137|emb|CBK76244.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 225 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/214 (25%), Positives = 99/214 (46%), Gaps = 15/214 (7%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L+ +GY A+ + G++ L+ E V I + ++ G EL +R Sbjct: 20 VLLNNGYCAIPAESGLA-----------ALKILDTEYVDLIISDIMMPGMDGYELIETLR 68 Query: 69 AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 +P++ I+ + F +G DD + KPI E++ R+ A+ +R ++S R Sbjct: 69 VSGYTLPILIITAKERFEDKQRGFLAGTDDYMVKPIDVNEMVLRIGALLKRARISTERKI 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + D GE LP++E +L LM+ K + Q+ I+G+ D + Sbjct: 129 ICGKTVLNYDALTVTFNGEELLLPQKEFYLLYKLMSYPNKIFTRQQLMDEIWGV-DSQSD 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E V+ HI++LR++ ++ F + + R LGY + Sbjct: 188 ERTVDVHINRLRERFKDCDDFQ-ILTVRGLGYKV 220 >gi|218256845|ref|ZP_03474359.1| hypothetical protein PRABACTJOHN_00011 [Parabacteroides johnsonii DSM 18315] gi|218225919|gb|EEC98569.1| hypothetical protein PRABACTJOHN_00011 [Parabacteroides johnsonii DSM 18315] Length = 255 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 78/151 (51%), Gaps = 8/151 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G K+ + R + +P+I ++ + L F+ G DD ++KP R+++ARV A+ Sbjct: 88 GFKMASILRKEEKTADIPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVVARVKAVL 147 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR E ++ + D + V G+ PL ++E IL+ L+ N+G ++ Sbjct: 148 RRTSDKEKVQENECLKYETLSLDTKRIKASVDGQEVPLTKKEFEILKLLLENKGNVFSRE 207 Query: 172 QIFSAIYGLFDEA-VEENVVESHISKLRKKL 201 +I S I+ DE V + ++ +I++LRKK+ Sbjct: 208 EILSRIWK--DEVYVLDRTIDVNITRLRKKI 236 >gi|154508069|ref|ZP_02043711.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC 17982] gi|153797703|gb|EDN80123.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC 17982] Length = 236 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 17/188 (9%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHS-QVPLIG 77 +L E W ++A++ + A+ + V+ ++PR+ +RA ++P++ Sbjct: 28 QALRHEGWETATAKDGLDALAKATSFHPDVVILDVQMPRMDGLETLERLRARDPELPVLF 87 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRV 133 ++ ++ + +G DD V KP E+ ARV + RR + A T + + Sbjct: 88 LTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRRAGRTQQAASTVLQVADLTL 147 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D D GE L E +L YLM N G ++K +I A++ +D + NVVE + Sbjct: 148 DVDSHDVRRGGEEITLTNTEFELLRYLMENAGIVLSKQKILDAVWS-YDFGGQVNVVELY 206 Query: 194 ISKLRKKL 201 IS LRKK+ Sbjct: 207 ISYLRKKI 214 >gi|77457581|ref|YP_347086.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77381584|gb|ABA73097.1| two component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 223 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + Sbjct: 63 LARLRARGKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLG 122 Query: 123 NNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + + D R + E+ L RE+ +LE L+A G+ ++K Q+ + ++GL Sbjct: 123 GERQQRCGVLAYDLDTRRFTLGDELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFGL- 181 Query: 182 DEAVEENVVESHISKLRKKL 201 DE + +E ++ +LRKKL Sbjct: 182 DEEASPDAIEIYVHRLRKKL 201 >gi|157162501|ref|YP_001459819.1| DNA-binding transcriptional regulator QseB [Escherichia coli HS] gi|157068181|gb|ABV07436.1| transcriptional regulatory protein QseB [Escherichia coli HS] Length = 219 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 L---REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + R + G+ L +E +LE LM N G+ + + I +Y Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLAGDPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|315647246|ref|ZP_07900359.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277448|gb|EFU40777.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 232 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 21/192 (10%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGI 78 + L+ + + SA + A+ F GK + +L LP+I R S+VP++ I Sbjct: 20 SQLQQDHYHVDSAHDGEEAVALFHSGKFDLILLDLMLPKINGMDLLRHFRESSKVPVLII 79 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SNNRAETGPIRVFS 135 S S G DD ++KP E+ ARV A RR + +++++ P+ F Sbjct: 80 SAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATLYAETDSKSAEPPVISFK 139 Query: 136 D------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 D +V+G PL +E IL+ LM N + K QI+ I+ D ENV Sbjct: 140 DLILDLHSFSVKVRGHHVPLTSKEFHILKLLMTNHSRVFTKEQIYQFIWE-DDYYGNENV 198 Query: 190 VESHISKLRKKL 201 + HI +LR+K+ Sbjct: 199 INVHIRRLREKI 210 >gi|294339218|emb|CAZ87572.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As] Length = 258 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 70/138 (50%), Gaps = 20/138 (14%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR---DPEVQ---- 143 D+G DD V KP E+ AR+ A+ RR + RAE VFS GR +P Sbjct: 91 LDAGADDYVLKPYDLDELSARIRALLRR---AAGRAEP----VFSYGRISLNPATHEALL 143 Query: 144 -GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 GE L +RE +LE L+A G +++ Q+ +Y DE + N VE ++ LRK Sbjct: 144 DGEPVALSQREWAVLEALIARPGMILSRAQLEEKLYSWKDE-ISSNAVEVYVHSLRK--- 199 Query: 203 NKLGFDPVDSKRFLGYSI 220 KLG D + + R +GY I Sbjct: 200 -KLGPDLIRNIRGMGYMI 216 >gi|325681118|ref|ZP_08160648.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324107040|gb|EGC01326.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 231 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 23/176 (13%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 EL + +R S +P+I +S + + D G DD + KP + E++ARV + + R+ Sbjct: 62 FELTKRVRITSSIPIIFLSAMNADSDKILGLDIGADDYITKPFNPLEVVARVQSNLRRKY 121 Query: 120 KVSNNRAETGPIRVFS----DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K+ + ++G + D + +Q GE L E +IL LM G+ K QI Sbjct: 122 KLDSTAHQSGELLTVGELTLDTKKFTLQKNGEDIQLTPTEFKILSTLMEKPGRVFTKAQI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK--------RFLGYSID 221 + I G + E ++N + HISKLR+KL + DSK R LGY I+ Sbjct: 182 YERINGEYFEN-DDNTMMVHISKLREKLGD-------DSKRPKYLKTVRGLGYKIE 229 >gi|229167490|ref|ZP_04295228.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH621] gi|228616052|gb|EEK73139.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH621] Length = 224 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 9/164 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +RA P+I ++ S+ + DSG DD + KP E+LAR+ I+RR Sbjct: 61 LEVCRRLRATKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRR-- 118 Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + F D R + E L +E +L M N + + + + Sbjct: 119 EENTEQKHASFLSFKDLQLQIESRTITKENEEIELTNKEFELLLMFMKNINRVLTRDILL 178 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G +D VE N+V+ ++ LR KL + + + + R GY Sbjct: 179 DQVWG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGY 221 >gi|226324201|ref|ZP_03799719.1| hypothetical protein COPCOM_01980 [Coprococcus comes ATCC 27758] gi|225207750|gb|EEG90104.1| hypothetical protein COPCOM_01980 [Coprococcus comes ATCC 27758] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 3/158 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IRA P++ ++ + ++ G DD ++KP E+ AR+ A RR Sbjct: 61 ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120 Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ R G + + + V + PL + E I E+L NRG+ +K QI ++G Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEEVFG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD ++ + +HI +R K + + P+ + +GY Sbjct: 180 FDSESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGY 216 >gi|225018950|ref|ZP_03708142.1| hypothetical protein CLOSTMETH_02901 [Clostridium methylpentosum DSM 5476] gi|224948294|gb|EEG29503.1| hypothetical protein CLOSTMETH_02901 [Clostridium methylpentosum DSM 5476] Length = 222 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 84/168 (50%), Gaps = 13/168 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 ++ R ++ P+I ++ + D G DD + KP RE+++R+ ++ RR Sbjct: 55 DVCRAVKGRGDTPVIFLTACDDEGNVVMGLDMGADDYITKPFRIRELISRIKSVLRRCSK 114 Query: 120 KVSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +VS +G IRV + R + E+ PL E R+L L+ N G+ +++ Q+ I+ Sbjct: 115 EVSKTVFLSGSIRVNTAQARVTRGEQEI-PLTSVEYRLLLTLIHNAGQVLSRAQLLDGIW 173 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221 + + V +N + +I +LR KL + DP + + R +GY ++ Sbjct: 174 DVGGDFVNDNTLTVYIKRLRDKLED----DPAHPSIIRTVRGIGYLVE 217 >gi|221133927|ref|ZP_03560232.1| response regulator [Glaciecola sp. HTCC2999] Length = 223 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 6/149 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 +P++ ++ L ++ D+G DD + KP E+LAR+ + RRL V ++ E + Sbjct: 73 IPILVLTARGQLSDKINGLDAGADDYLPKPFALEELLARLRVLQRRLGTVMSSTIEISQV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + D V + L R+E +L LM + V+K Q+ S +Y + V N +E Sbjct: 133 SLNIDSMLVTVNDTMIQLRRKEFMVLRALMERANRIVSKAQLESMLYE-WGHEVSSNAIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 H+ LRKKL + + R +GY I Sbjct: 192 VHVHNLRKKLPEHF----ITNIRGVGYCI 216 >gi|160880001|ref|YP_001558969.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428667|gb|ABX42230.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 225 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 3/129 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPL 149 F +G DD + KP++ E+L R+ A+ RR K+ N ++ G + + D GE L Sbjct: 92 FLAGTDDYMVKPVNEDEMLLRIKALLRRAKIVNEHKLHIGKVTLDYDALTVSKDGESQTL 151 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 P++E +L L++ + + Q+ I+G+ E V + V HI++LRK+ FD Sbjct: 152 PQKEFYLLYKLLSYPDRIFTRIQLMDEIWGMESETV-DTTVNVHINRLRKRFEGYSEFDI 210 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 211 I-AIRGIGY 218 >gi|119715795|ref|YP_922760.1| response regulator receiver [Nocardioides sp. JS614] gi|119536456|gb|ABL81073.1| response regulator receiver [Nocardioides sp. JS614] Length = 228 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 2/150 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPI 131 +P++ ++ ++ +D D+G DD + KP E+LAR+ A+YRR + + G + Sbjct: 74 LPILMLTARGDVRDRIDGLDAGADDYLPKPFDLDELLARLRALYRRGGLGGEAPVQIGDL 133 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V R G L RE IL L ++ G+ V + I ++ + + NV++ Sbjct: 134 VVDPGARRVSRGGVEIILSTREFDILYLLASHAGQVVTRLTILDEVWD-GETDLRSNVID 192 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 H++ +R K+ G D + + R +GY +D Sbjct: 193 VHLAAIRGKIDKPFGTDTITTLRGVGYRLD 222 >gi|302387482|ref|YP_003823304.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302198110|gb|ADL05681.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 231 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 13/146 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP++ ++ + + SG DD + KP E++ARV ++ RR N Sbjct: 68 IRQKSSVPILMLTSKNDSTSKIRGLRSGADDYLTKPFDMDELIARVVSLIRRYTRFNTTG 127 Query: 127 ETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179 + + + D R Q F LP +E +L + N+GK + K QI+ ++G Sbjct: 128 DHSQPLTYQGLTIDMDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIYEEVWGE 187 Query: 180 --LFDEAVEENVVESHISKLRKKLRN 203 ++D++ N++ + IS+LRKK+ + Sbjct: 188 SYVYDDS---NIM-AIISRLRKKIES 209 >gi|317129907|ref|YP_004096189.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315474855|gb|ADU31458.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 238 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 74/138 (53%), Gaps = 11/138 (7%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVS------NNRAE---TGPIRVFSDGRDPEVQG 144 G DD + KP RE++ARV AI RR K + +N E G + ++SD + ++G Sbjct: 96 GADDYLTKPFSPREVVARVRAILRRTKAAKRSEKDDNEKEKIVIGDVEIYSDNYEVFLKG 155 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-N 203 L +E +L YL ++G+ + + Q+ +A++ ++ + +V+ HIS LR+K+ N Sbjct: 156 NQLELTPKEFELLLYLANHKGRVMTRDQLLNAVWN-YEFVGDTRIVDVHISHLREKIEPN 214 Query: 204 KLGFDPVDSKRFLGYSID 221 + + R LGY ++ Sbjct: 215 TKKPIYIKTIRGLGYKLE 232 >gi|197303640|ref|ZP_03168677.1| hypothetical protein RUMLAC_02367 [Ruminococcus lactaris ATCC 29176] gi|197297160|gb|EDY31723.1| hypothetical protein RUMLAC_02367 [Ruminococcus lactaris ATCC 29176] Length = 226 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 8/160 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP+I IS + + G DD + KP + A+V A+ RR + + Sbjct: 67 IRKVSNVPVIFISSAADNMNIIMAMNMGGDDFIAKPFDLNVLTAKVQAVLRRTYDLSGKV 126 Query: 127 ----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 G I D +GE L + E +IL+ LM N+G+ V++ + + ++ D Sbjct: 127 PMLEHRGAILNLYD-TTLTYEGEKVNLTKNEFKILQILMENKGRLVSRDTLMTKLWET-D 184 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 + +EEN + +I++LRKKL K G D + +K GY I+ Sbjct: 185 DYIEENTLTVNIARLRKKLE-KAGLDEFITTKVGGGYLIE 223 >gi|170697617|ref|ZP_02888706.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|171321223|ref|ZP_02910192.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|172061579|ref|YP_001809231.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|170137504|gb|EDT05743.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|171093507|gb|EDT38679.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171994096|gb|ACB65015.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 210 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA Q +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 50 IDVLRTLRARGQSLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 108 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+E+ G + + + G L RE +L+ L+A G ++K+Q+ Sbjct: 109 --QAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLQALLARPGAVLSKSQLEE 166 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 167 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 206 >gi|188579406|ref|YP_001922851.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179342904|gb|ACB78316.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 17/225 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D ++ DG A G G ++E + + +++ ++ L G G V Sbjct: 3 ILVVEDDPILSDGLRAGLGLSGATVECVATCADADAALAASGFGAVVLDLMLPDGSGLDV 62 Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R +R + P++ ++ ++ + D G DD + KP E+ AR+ A+ RR Sbjct: 63 L---RGLRERGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELAARIRAVVRR- 118 Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ RA E IR+ + GE P+ RRE +L LM +K ++ Sbjct: 119 --ASGRAAACLEHAGIRLDPAELAVTLHGEPVPVSRREFMVLTALMERPNVLRSKAELEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E VE N VE H+ LR K+G +++ R LGY + Sbjct: 177 RLYG-WQEEVESNTVEVHVHNLRA----KIGKHAIETVRGLGYRM 216 >gi|71899946|ref|ZP_00682093.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|71730309|gb|EAO32393.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] Length = 231 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 14/199 (7%) Query: 33 EFEEWLQSSAREDVSAIEAFL--------IGKGEKVLELPRIIRAHS---QVPLIGISDY 81 EFE S ARE + I + + G LEL R R S ++P+I ++ Sbjct: 26 EFESLQASDAREAQAVIADCVPDLILLDWMLPGTSGLELTRRWRKASLTREIPIIMLTAR 85 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE 141 + ++GVDD + KP RE+LAR+ A+ RR + ++ DG Sbjct: 86 SEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMRRTRDDEEDGSVAIGKLRIDGAAHR 145 Query: 142 V-QGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 V G V P+ E R+L + M + + ++TQ+ ++G +EE ++ HI +LR+ Sbjct: 146 VYAGHVQVPIGPTEYRLLHFFMTHSERVYSRTQLLDHVWG-SGVYIEERTIDVHIRRLRR 204 Query: 200 KLRNKLGFDPVDSKRFLGY 218 L D V + R GY Sbjct: 205 TLEPFGLDDMVQTVRSAGY 223 >gi|255320358|ref|ZP_05361542.1| KDP operon transcriptional regulatory protein KdpE [Acinetobacter radioresistens SK82] gi|262379359|ref|ZP_06072515.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255302553|gb|EET81786.1| KDP operon transcriptional regulatory protein KdpE [Acinetobacter radioresistens SK82] gi|262298816|gb|EEY86729.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 231 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 47/242 (19%) Query: 2 FVLIDDR---------ALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEA 51 V+IDD AL +GY LFG +++G E+L S + + V Sbjct: 10 IVVIDDEPQIRKFLGIALRSEGYQTQLFG---TAMQGL------EYLSSQSAQLVILDLG 60 Query: 52 FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 G+ +L + +R+ S++P+I +S Q + D+G +D V KP +E++AR Sbjct: 61 LPDLDGQDIL---KELRSWSEIPVIVLSVRSDEQEKVTLLDAGANDYVTKPFSVQELMAR 117 Query: 112 VAAIYR-RLKVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 + + R RL N+ ET G +++ R + + L R+E +L L NRG Sbjct: 118 IRVVLRSRL----NQTETHDYDDGYLKINFVQRQTYINSQAVALTRKEFHLLSLLARNRG 173 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK----------RF 215 + + + QI ++G +E+ ++ L KLRNKLG D + + RF Sbjct: 174 QLLTQPQILKELWG---PTHQEDT--HYLRILVAKLRNKLGEDAIHPQYIITEPGVGLRF 228 Query: 216 LG 217 LG Sbjct: 229 LG 230 >gi|242238572|ref|YP_002986753.1| DNA-binding transcriptional activator KdpE [Dickeya dadantii Ech703] gi|242130629|gb|ACS84931.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech703] Length = 226 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 18/160 (11%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R S +P+I +S Q +D D+G +D + KP E+LARV RR ++ Sbjct: 66 RDLRQWSAIPIIVLSARTDEQDKIDALDAGAEDYLTKPFGIGELLARVRVALRR---AST 122 Query: 125 RAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ P+ VFSD R E L E R+L L+AN GK + + Q+ + ++ Sbjct: 123 APQSSPLIVFSDVTVDLVNRQVSRADEAIHLTPIEFRLLATLLANPGKVLTQRQLLNQVW 182 Query: 179 GLFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216 G N VE SH ++ LR KL DP + F+ Sbjct: 183 G-------PNAVEHSHYLRIYMGHLRQKLEQDPARPRHFI 215 >gi|315497608|ref|YP_004086412.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] gi|315415620|gb|ADU12261.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] Length = 233 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 11/174 (6%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 ++G + + L + A P++ +S + +D DSG DD + KP +E+LARV Sbjct: 56 MLGNTDGLNVLTTLREAGITTPILVLSALARSENRIDGLDSGADDYLGKPFEPKELLARV 115 Query: 113 AAIYRRLKVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 A+ RR S NR + G + + R G L +E IL+ LM + G Sbjct: 116 RALIRR---SQNRMHSAILIYGDLELHVKSRTAHRAGRHLALSPKEFEILKLLMEHAGDV 172 Query: 168 VAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V + + ++ L FD + NV++ ++S+LR +L + +++ R +G+ + Sbjct: 173 VTRDMLLQKVWRLNFDP--QTNVIDVNMSRLRNRLEDGFEQPVLETVRGIGFRL 224 >gi|229076091|ref|ZP_04209059.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-18] gi|229099049|ref|ZP_04229983.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] gi|229105217|ref|ZP_04235866.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|229118080|ref|ZP_04247439.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228665303|gb|EEL20786.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228678143|gb|EEL32371.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|228684277|gb|EEL38221.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] gi|228706954|gb|EEL59159.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-18] Length = 239 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 12/139 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNR--AET--------GPIRVFSDGRDPEVQ 143 G DD + KP RE++ARV AI RR K+ AE +++ + + Q Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVAEAPDEDSILIADLKILPEFYEAYFQ 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202 G L +E +L YL N+ + + + Q+ SA++ +D A + +V+ HIS LR K+ + Sbjct: 156 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEK 214 Query: 203 NKLGFDPVDSKRFLGYSID 221 N + + R LGY ++ Sbjct: 215 NTKKPTYIKTIRGLGYKLE 233 >gi|94972032|ref|YP_594072.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554083|gb|ABF43998.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 244 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 12/181 (6%) Query: 27 EGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGISD 80 +GF LE E Q+ + + DV+ ++ L G LEL R RAH+ +VPL+ ++ Sbjct: 38 DGFRVLEAREGAQALSLLPQADVAVLDWML--PGMTGLELAR--RAHATFPEVPLLMLTA 93 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP 140 + L + G DD V KP RE++AR+ + RR+ V E G + + R Sbjct: 94 RDGEEDKLLGLEGGADDYVTKPFSPREVVARLKVLLRRMGVREV-IEHGELHLDVRARAA 152 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 ++GE L + E +L L G + ++ ++G+ D E VV+ HI+ LR+K Sbjct: 153 TLRGEALGLSKLEFDLLFTLAQYPGLAWTRERLLERVWGV-DYPRMERVVDVHITGLRRK 211 Query: 201 L 201 L Sbjct: 212 L 212 >gi|90022369|ref|YP_528196.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89951969|gb|ABD81984.1| response regulator receiver [Saccharophagus degradans 2-40] Length = 230 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 6/175 (3%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD 89 N + +WLQ++ +V + L+ G L++ R IR S VP+I I+ L Sbjct: 38 NGTDANDWLQAN---EVDIVLLDLMLPGMSGLDICRDIRKASDVPVIMITAKVEEIDRLI 94 Query: 90 FFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVF 147 + G DD + KP RE++AR A+ RR S++ + + + + V + Sbjct: 95 GLELGADDYICKPYSPREVVARTKAVLRRTLSDTSSSEDQNQSVVLCEERSSVIVHKQEI 154 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 L + E R+ + L G+ ++ I IY + V + V+SHI KLRKKL+ Sbjct: 155 ELTQIEYRMFKLLFEQPGRIFSRQFIMDNIYTDY-RVVSDRTVDSHIKKLRKKLQ 208 >gi|17228665|ref|NP_485213.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130516|dbj|BAB73127.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 234 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 14/190 (7%) Query: 40 SSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDV 98 SSA+ V ++ L G LEL + +R +P++ ++ ++ + D+G DD Sbjct: 43 SSAQYTVVILDWMLPGISG--LELCKRLRYQGNPLPILMLTAKDRMEDKVAGLDAGADDY 100 Query: 99 VNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 + KP E+LAR+ A+ RR L V N + G V E Q PL Sbjct: 101 LVKPFGMVELLARLRALQRRSPHLQPQQLTVGNFTLDYGNSTVVRQNTTGEQQS--IPLT 158 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 +E ++LEY M + + V QI + I+ + E+ NVV + I LR+KL + +P+ Sbjct: 159 NKEFQLLEYFMNHPHQIVTTEQIRNQIWEVNAES-SSNVVAAQIRLLRRKLTSNDCPNPI 217 Query: 211 DSKRFLGYSI 220 ++ +GY + Sbjct: 218 ETLHGMGYRL 227 >gi|125974109|ref|YP_001038019.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125714334|gb|ABN52826.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] Length = 224 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 111/226 (49%), Gaps = 13/226 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEK 59 ++ + DDR+ +++ I +G GF+ E F + L++ D+ ++ L GE Sbjct: 2 IYCVEDDRS-IRELIIYALKSNGYEAVGFDKAEPFYKELENKL-PDLVLLDIML--PGED 57 Query: 60 VLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 +E+ + ++A + +P+I ++ + + DSG DD + KP E L+RV A+ Sbjct: 58 GIEILKKLKASPKLRNIPVIMLTAKSAEYDKVLGLDSGADDYITKPFGIMEFLSRVKAVL 117 Query: 117 RRLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR +N +E G + ++ D G+ L +E +L+YLM N G + + ++ Sbjct: 118 RRSGNVSNSSEISVGQLTMYIDKHVVIADGKEVALTFKEFELLKYLMENAGIVLTRDKLL 177 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ E ++ HI LR+KL +++ R +GY I Sbjct: 178 EEVWG-YEYEGETRTLDVHIRTLRQKLGEAGAI--IETVRGVGYKI 220 >gi|325066524|ref|ZP_08125197.1| two component system response regulator [Actinomyces oris K20] Length = 248 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 9/166 (5%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R H VP++ ++ +++ + +G DD V KP E++AR+ A+ RR Sbjct: 76 LEVMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRRS 135 Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S + E G +R+ D + + L E +L YLM N + ++K QI Sbjct: 136 GASEEKQASLLEVGDLRMDEDSHEVWRGEDEIQLTATEFELLRYLMRNPRRVLSKPQILD 195 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 ++ +D + N+VE +IS LR+K+ G +P + + R +GY + Sbjct: 196 RVWN-YDFGGQANIVELYISYLRRKIDK--GREPMIHTMRGVGYVL 238 >gi|307823691|ref|ZP_07653919.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307734985|gb|EFO05834.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 226 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 9/170 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +V E R+ A P++ ++ ++Q + SG DD + KP E+LAR+ A+ Sbjct: 59 GRQVCE--RLRDAGVGTPILMLTARDTVQDKVTGLRSGADDYMTKPFAFEELLARIEALM 116 Query: 117 RRLKVSNNRAETGPIRV---FSDGRDPEV-QGEVF-PLPRRERRILEYLMANRGKRVAKT 171 RR + + ET ++V +G EV +GE L +E +LE M GK +++T Sbjct: 117 RR-RSGEIKLETKELQVADLLLNGETHEVRRGETLIELTPKEFALLECFMRMPGKVLSRT 175 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +I ++G + + NVV+ +I +LR+K+ + + + R GY +D Sbjct: 176 RILEQVWGYSADPL-TNVVDVYIRQLRRKIDDDYELKLLKTVRGFGYKLD 224 >gi|154484426|ref|ZP_02026874.1| hypothetical protein EUBVEN_02139 [Eubacterium ventriosum ATCC 27560] gi|149734903|gb|EDM50820.1| hypothetical protein EUBVEN_02139 [Eubacterium ventriosum ATCC 27560] gi|291551280|emb|CBL27542.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 3/158 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IR P++ ++ + ++ G DD ++KP E+ AR+ A RR Sbjct: 61 ELCKRIRILVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120 Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ R G + + + V + PL + E I E+L NRG+ +K QI A++G Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD ++ + +HI +R K + + P+ + +GY Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGY 216 >gi|134296824|ref|YP_001120559.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134139981|gb|ABO55724.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 IDVLRTLRARGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 118 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+E+ GP+ + + G L RE +LE L+ G ++K+Q+ Sbjct: 119 --QAGRSESLIRHGPLTLDPASHQVTLDGAPVALSAREFALLEALLVRPGAVLSKSQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 177 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 216 >gi|17232680|ref|NP_489228.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134327|dbj|BAB76887.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 222 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 13/213 (6%) Query: 16 IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQ 72 IA F + G+ +GF + + ++ S + ++ G+ L++ +R + Sbjct: 13 IAAFIEKGLRSQGFTTAVATDAYSATNMALSSGFDLMILDLGLPGKDGLDVLEELRGQGE 72 Query: 73 -VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128 +P+I ++ +Q + F++G DD + KP E+L RV A R+ S ET Sbjct: 73 NIPVIILTARDDIQDKVAGFEAGADDYLTKPFRFEELLVRVKARLRQSGGSQAMEETVIK 132 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G I + R ++ + LP RE + E + G+ +++ Q+ ++G +D Sbjct: 133 SGNIVLDLRSRKVKIGQDTIELPAREFTLAETFFRHPGQVLSREQLLDRVWG-YDYDPGS 191 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+V+ ++ LRKKL N L +++ R +GY + Sbjct: 192 NIVDVYVGYLRKKLGNDL----IETVRGMGYRL 220 >gi|319650237|ref|ZP_08004383.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] gi|317398068|gb|EFV78760.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] Length = 231 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 87/188 (46%), Gaps = 19/188 (10%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAH-SQVPLIGIS 79 LEFE + + A + A+E + G+ + ++ E+ R IR+ Q P++ ++ Sbjct: 22 LEFEGYQVTKAMDGYQAMELYRTGRWDLIILDIMLPGFSGIEILRRIRSKDKQTPILLLT 81 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRD 139 S++ + D G +D + KP E+LAR+ A R SD + Sbjct: 82 AKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRIKSAGTEEPAVHDCLEVSDLKL 141 Query: 140 PEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 E EV L RE +L YLM N+ + + + QI A++G +D + NVV+ + Sbjct: 142 NEKTREVSRGDKAIELTPREFDLLVYLMTNKRQVLNREQILEAVWG-YDFLGDTNVVDVY 200 Query: 194 ISKLRKKL 201 I LRKK+ Sbjct: 201 IRYLRKKI 208 >gi|296447705|ref|ZP_06889622.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296254789|gb|EFH01899.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 233 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 10/148 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R IR S +P++ IS + + ++ D FD G DD + KP+ RE+ AR+A + ++ Sbjct: 63 LSILRSIRRTSSLPIVMISGWGTAESRADVFDVGADDYLMKPLSVRELQARIARLV-SVR 121 Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S +RA + G I R + L E RIL YL N G+ +K+ I+ Sbjct: 122 ASTSRAAAPAIFQIGKIVCDLQMRRLRRHDRMVGLTDTEGRILGYLHENAGRSCSKSAIY 181 Query: 175 SAIYGLFDEAVE-ENVVESHISKLRKKL 201 + F E + + ++ +I +LR KL Sbjct: 182 K--HAFFREYLSGDKTLDVYIGRLRAKL 207 >gi|270289944|ref|ZP_06196170.1| two-component system, OmpR family, response regulator VicR [Pediococcus acidilactici 7_4] gi|304385805|ref|ZP_07368149.1| response regulator [Pediococcus acidilactici DSM 20284] gi|270281481|gb|EFA27313.1| two-component system, OmpR family, response regulator VicR [Pediococcus acidilactici 7_4] gi|304328309|gb|EFL95531.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 233 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 10/207 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D I F D + + + EE L+ E+ I L+ L Sbjct: 4 ILVVDDEKPISD--IVKFNLDKEGYDVVTAYDGEEALEKVESEEPDLILLDLMLPKIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ R +RA +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 62 EVARQVRAKHNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQDQ 121 Query: 119 LKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + SN N + GP+ + SD G L RE +L YL + + + + + Sbjct: 122 FQQSNEEVKNNIKIGPLVINSDSYSVTRDGAQLDLTHREFELLHYLAQHTDQVMTREHLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++G +D + V+ + +LR+K+ Sbjct: 182 QTVWG-YDYFGDVRTVDVTVRRLREKI 207 >gi|254773908|ref|ZP_05215424.1| two component response transcriptional regulatory protein prra [Mycobacterium avium subsp. avium ATCC 25291] Length = 223 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 15/207 (7%) Query: 23 GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75 G+ L GF +++ E L+S+ + +A ++ VL+ ++ A + VP+ Sbjct: 16 GLRLSGFEVSTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 72 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET---GPI 131 +S S+ + ++G DD + KP E++ARV A+ RR + + +ET GP+ Sbjct: 73 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGPL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V GR V G L +RE +L L ++ +++ Q+ ++G +D A + NVV+ Sbjct: 133 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 I LR+KL G + + R +G+ Sbjct: 192 VFIGYLRRKLEANGGPRLLHTVRGVGF 218 >gi|225174332|ref|ZP_03728331.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225170117|gb|EEG78912.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 224 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 105/228 (46%), Gaps = 21/228 (9%) Query: 1 MFVLIDDRALVK--------DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52 + V+ DDR L K +GY L +DGV +LE L SA D+ + Sbjct: 4 ILVVEDDRNLQKLMKAVLRQNGYNVLCAEDGVQ-----ALE----LLDSAHVDLIICDIM 54 Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 + L + +A++ +P++ ++ + F G DD + KP+ E++ RV Sbjct: 55 MPNMDGYALT-DTLRKANNNLPVLMVTARETFDDKKKGFLVGTDDYMVKPVDMDEMVLRV 113 Query: 113 AAIYRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 AA+ RR ++ N R G + + D + LP++E +L L++ + + Sbjct: 114 AALLRRSRIINERRLSIGEVELNYDTLTVHRNNNSYILPKKEFYLLFKLLSYPKQIFTRQ 173 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 Q+ I+G+ D +E V+ HI +LR+K + F+ V + R LGY Sbjct: 174 QLMDEIWGM-DAEADERTVDVHIKRLREKFADFPEFEIV-TVRGLGYK 219 >gi|167946589|ref|ZP_02533663.1| transcriptional regulatory protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 145 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 77/147 (52%), Gaps = 6/147 (4%) Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVF 134 I I+ +Q + D+G DD + KP E+ AR+ A+ RR + N E G I++ Sbjct: 1 IIITARDQIQDRVCALDNGADDYLVKPFDTDELCARLRAMQRRFYRGVNTIIEHGNIQLD 60 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 E+ G L RE +L+ L+ N G+ +++ ++ ++YG +D++++ N VE I Sbjct: 61 LSSHRLEINGIPVTLSPREFTLLQVLLENAGRVLSRQRLIESLYG-WDDSIDSNAVEVFI 119 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSID 221 LRK K+G + + R +GY I+ Sbjct: 120 HHLRK----KVGPGLIRTVRGIGYLIE 142 >gi|16125542|ref|NP_420106.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|221234288|ref|YP_002516724.1| two-component response regulator protein [Caulobacter crescentus NA1000] gi|13422630|gb|AAK23274.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|220963460|gb|ACL94816.1| two-component response regulator protein [Caulobacter crescentus NA1000] Length = 242 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 105/229 (45%), Gaps = 27/229 (11%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGKGEKVLELP 64 +R L +GY DGVS LE L + RE I L+ +E+ Sbjct: 17 ERGLKAEGYKVRVARDGVS-----GLEAARDLDAMLRELDQRGVILLDLMLPKMTGMEVC 71 Query: 65 RIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----- 118 + +RA + P++ ++ ++ + +G DD + KP E+LAR+ A+ RR Sbjct: 72 QTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARIEALLRRSRDQR 131 Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 LK N + +RV D GE L RE +LE +++ G+ +++ + Sbjct: 132 APANRTLKAGNVELDRTTMRVSRD-------GEEVVLTARELALLELFLSSPGRVLSRER 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I S ++G+ DE NVV+ ++ +LR K+ L + + R LGY ++ Sbjct: 185 ILSNVWGV-DEDPLTNVVDVYVRRLRAKIDPPLASSFITTVRGLGYRLE 232 >gi|238783827|ref|ZP_04627845.1| Transcriptional regulatory protein baeR [Yersinia bercovieri ATCC 43970] gi|238715214|gb|EEQ07208.1| Transcriptional regulatory protein baeR [Yersinia bercovieri ATCC 43970] Length = 239 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 2/158 (1%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G + + R IR S VP++ ++ L + G DD + KP RE++ARV Sbjct: 63 LMLPGSDGITICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARV 122 Query: 113 AAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 I RR + + +E+ P+ + QG + L E R+L+ L G ++ Sbjct: 123 KTILRRCQQQREQPSESAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 Q+ + +Y + V + ++SHI LR+KL G P Sbjct: 183 QLLNNLYDDY-RVVTDRTIDSHIKNLRRKLEALDGEKP 219 >gi|257870078|ref|ZP_05649731.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257804242|gb|EEV33064.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 234 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/210 (24%), Positives = 93/210 (44%), Gaps = 11/210 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D I F E + + + EE L+ A + I L+ L Sbjct: 4 ILVVDDEKPISD--IVKFNLTKEGYEVYTAYDGEEALEKVAEIEPDLILLDLMLPKMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 62 EVAREVRKNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSA 121 Query: 122 SNNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S AE P + + D GE L RE ++ YL + G+ + + + Sbjct: 122 SAKEAEEAPNAELTIGDLTIHPDAYMVTKNGEAIELTHREFELMHYLAKHLGQVMTREHL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++G +D + V+ + +LR+K+ + Sbjct: 182 LQTVWG-YDYFGDVRTVDVTVRRLREKIED 210 >gi|229819337|ref|YP_002880863.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565250|gb|ACQ79101.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 241 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 92/189 (48%), Gaps = 20/189 (10%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP---------RIIRAHSQVPLIG 77 SL F + +A + A+EA + G+ + V+ LP R+ + P++ Sbjct: 29 TSLRFAGFDVVTASDGTEALEAIVEGEPDLVVLDVMLPDMDGFTVTRRLRERGVRTPVVF 88 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR----- 132 ++ + + G DD V KP E++AR+ A+ RR + + A++G +R Sbjct: 89 LTARDDVADAVTGLTVGGDDYVTKPFSLEEVVARIRAVLRRSQAHD--ADSGVLRYADLE 146 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + D R+ G L E ++L YLM N G+ ++KTQI ++ +D E +VES Sbjct: 147 LDEDAREVRRAGRPVELSPTEFKLLRYLMLNAGRVLSKTQILDHVWE-YDWRGESAIVES 205 Query: 193 HISKLRKKL 201 +IS LR+K+ Sbjct: 206 YISYLRRKI 214 >gi|224368156|ref|YP_002602319.1| transcriptional regulatory protein [Desulfobacterium autotrophicum HRM2] gi|223690872|gb|ACN14155.1| transcriptional regulatory protein [Desulfobacterium autotrophicum HRM2] Length = 232 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 1/135 (0%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 +A P++ ++ ++ + D G DD + KP E++AR+ A+ RR + Sbjct: 73 QAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRRDGKRDTILT 132 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVE 186 GP+ + + R + L +E ILE+L+ NRG V++ + ++G FD Sbjct: 133 AGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWGNEFDPFSM 192 Query: 187 ENVVESHISKLRKKL 201 N V+ HI LRKK+ Sbjct: 193 SNFVDVHIKNLRKKI 207 >gi|229012380|ref|ZP_04169557.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228749016|gb|EEL98864.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 68/148 (45%), Gaps = 7/148 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----- 117 + R IR S VP+I ++ TL F+ G DD V KP +LAR + Sbjct: 64 VCRRIRKKSNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIESRYSS 123 Query: 118 RLKVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + VS T I V R V GE + E IL Y M N+G +++ Q+ + Sbjct: 124 TINVSTEDTLTSSGIHVHFPSRTVTVDGEDISMTHTEFEILTYFMQNQGIVISREQLITK 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204 I+G ++ A ++ V SHI LR KL K Sbjct: 184 IWG-YEFAGDDRTVNSHIRNLRHKLGQK 210 >gi|251797216|ref|YP_003011947.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544842|gb|ACT01861.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 221 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 5/160 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R R + P++ ++ + + FD+ DD V KP + +L RV A+ RR Sbjct: 63 ELLREFRKRNNTPILMMTALSDDENQIKAFDAEADDYVTKPFKIQLLLKRVGALLRRSGA 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + D G PL +E IL L+ N+G+ ++ I S ++G + Sbjct: 123 LAKEIRCSNLTILPDDFRALYDGVELPLTLKEFEILMLLVQNKGRTLSHEIILSRVWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + + V +HI LR KL + + + R +GY ++ Sbjct: 182 DFDGDGSTVHTHIKNLRAKLPENM----IKTARGVGYRLE 217 >gi|26988153|ref|NP_743578.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24982886|gb|AAN67042.1|AE016333_3 transcriptional regulatory protein TctD [Pseudomonas putida KT2440] gi|313500352|gb|ADR61718.1| TctD [Pseudomonas putida BIRD-1] Length = 223 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 70/130 (53%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPI 131 +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + R + GP+ Sbjct: 73 LPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLGGERQQRCGPL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 D R + + L RE+ +LE L+A G+ ++K Q+ + ++GL DE + +E Sbjct: 133 VYDLDTRRFTLGDDNLTLTSREQSVLEALIARPGRVMSKEQLAAQVFGL-DEEASPDAIE 191 Query: 192 SHISKLRKKL 201 +I +LRKKL Sbjct: 192 IYIHRLRKKL 201 >gi|333031401|ref|ZP_08459462.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] gi|332741998|gb|EGJ72480.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] Length = 228 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 80/158 (50%), Gaps = 8/158 (5%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETG 129 +++P+I ++ S L F G DD ++KP +E++ARV AI +R K+ N + T Sbjct: 72 NEIPIIFLTAKRSENDMLTGFSVGADDYISKPFSIKEVIARVKAILKRAKLKKQNESPTS 131 Query: 130 ----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + + + ++ + E+ PL + E IL L +N + ++ I ++ + Sbjct: 132 IDFEGLSINLESKEVIIDEEMIPLTKTEFEILALLTSNPSRLFSREDIIGVVWSE-TPYI 190 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E V+ HI++LRKK+++ F + S+ GY + N Sbjct: 191 TERTVDVHITRLRKKMKDYGQF--ITSRSGYGYRFNVN 226 >gi|323705241|ref|ZP_08116816.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535143|gb|EGB24919.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 229 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 96/203 (47%), Gaps = 25/203 (12%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68 L K+GY L +G + N+ + + D+ ++ L G GE E+ R IR Sbjct: 20 LEKEGYTVLTETNGAN--ALNTFK-------TVNPDLVILDLMLPGMSGE---EICRKIR 67 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A S+VP++ ++ S + F G DD + KP RE+ RV AI RR K N Sbjct: 68 ALSKVPILMLTAKVSEDDKVYGFTIGADDYLTKPFSPRELTMRVKAILRRTK---NDLPL 124 Query: 129 GPIRVFSDG------RDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 I +F+DG R EV +G + L E ++L ++ N K ++++ +G Sbjct: 125 NDIFMFNDGDLVIDTRSYEVKKKGRIVNLTPNEYKLLTVMVQNPNKVFTRSELIEKAFG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRN 203 +D + +++HI LR+K+ + Sbjct: 184 YDFDGFDRTIDAHIKNLRQKIED 206 >gi|169628053|ref|YP_001701702.1| transcriptional regulatory protein PrrA [Mycobacterium abscessus ATCC 19977] gi|169240020|emb|CAM61048.1| Probable transcriptional regulatory protein PrrA [Mycobacterium abscessus] Length = 233 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 5/135 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET- 128 + VP+ +S S+ + ++G DD + KP E++ARV A+ RR V+ + ET Sbjct: 78 NDVPVCVLSARTSVDDRVAGLEAGADDYLTKPFVLAELVARVKALLRRRGAVATSSTETI 137 Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 GP+ V GR + G L +RE +L L ++ +++ Q+ ++G +D A + Sbjct: 138 TVGPLEVEIPGRRARINGVEVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAAD 196 Query: 187 ENVVESHISKLRKKL 201 NVV+ I LR+KL Sbjct: 197 TNVVDVFIGYLRRKL 211 >gi|149926997|ref|ZP_01915255.1| two component transcriptional regulator, winged helix family protein [Limnobacter sp. MED105] gi|149824218|gb|EDM83438.1| two component transcriptional regulator, winged helix family protein [Limnobacter sp. MED105] Length = 236 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 84/163 (51%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA + +P++ ++ S++ + D+G DD + KP +E+ ARV A+ RR Sbjct: 60 LEVLRRLRARGNNMPVLILTAADSVEQRVQGLDAGADDYMAKPFDLKELEARVRALARRG 119 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP+ GR + ++ L RE +LE L+ G+ V+K Q + Sbjct: 120 TGGGASIWKHGPLTFDQVGRIAYINDDMLDLSAREVGLLEVLLQRVGRLVSKEQFVDHLC 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E +I +LRKK+ ++ + + R LGY ++ Sbjct: 180 E-WGEEVSNNAIEVYIHRLRKKI--EVNGVRIATVRGLGYCLE 219 >gi|148273658|ref|YP_001223219.1| putative two component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170783063|ref|YP_001711397.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|147831588|emb|CAN02556.1| putative two component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169157633|emb|CAQ02831.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 230 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 3/158 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ A P++ ++ + + G DD V KP EI+AR+ AI RR ++ Sbjct: 69 RLRAAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTMHADE 128 Query: 125 RA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 A G + + D + V E L E ++L YLM N + ++K QI ++ +D Sbjct: 129 DAIIRAGELTMDQDTHEVLVGEEPIELSPTEFKLLRYLMLNPNRVLSKAQILDHVWE-YD 187 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +VES+IS LR+KL + +KR GY + Sbjct: 188 FNGDAGIVESYISYLRRKLDQHSSEPVIQTKRGFGYML 225 >gi|89896308|ref|YP_519795.1| hypothetical protein DSY3562 [Desulfitobacterium hafniense Y51] gi|89335756|dbj|BAE85351.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 228 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 3/160 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + R + P+I ++ L+ + D G DD + KP H E+LAR+ A+ RR Sbjct: 63 LKEVRRNRIETPVILLTARGQLEDKVRGLDLGADDYLAKPFHTDELLARLRALGRRPPAL 122 Query: 123 NNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N +++ + G+ L +E ++LE L+ ++ V+K I I+G Sbjct: 123 LNEGALSFADLQLLPHALMLKSNGQEIKLTLKEAQLLELLINHKNIIVSKDAIIEKIWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +N VE+HIS LRKKL + + R GY++ Sbjct: 182 HDTDAADNHVEAHISLLRKKLSEIHSGSMIRTIRGAGYTL 221 >gi|163942322|ref|YP_001647206.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229062273|ref|ZP_04199594.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] gi|229135424|ref|ZP_04264211.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|229169315|ref|ZP_04297025.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|163864519|gb|ABY45578.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228614078|gb|EEK71193.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|228647985|gb|EEL04033.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|228717001|gb|EEL68682.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] Length = 239 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 12/139 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----------ETGPIRVFSDGRDPEVQ 143 G DD + KP RE++ARV AI RR K+ + +++ + + Q Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVSESPDEESIKIAELKILPEFYEAYFQ 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202 G L +E +L YL N+ + + + Q+ SA++ +D A + +V+ HIS LR K+ + Sbjct: 156 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQ 214 Query: 203 NKLGFDPVDSKRFLGYSID 221 N + + R LGY ++ Sbjct: 215 NTKKPTYIKTIRGLGYKLE 233 >gi|315644225|ref|ZP_07897395.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315280600|gb|EFU43889.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 243 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 104/216 (48%), Gaps = 28/216 (12%) Query: 29 FNSLEFEEWLQSSAREDVSAIEAFLIGK-----------GEKVLELPRIIRAHS-QVPLI 76 FN LE E + A + +SA+E L + G+ +++ R +RA + Q+P+I Sbjct: 20 FN-LEKEGYDVICAFDGISAVEIALTKRPDLMLLDLMLPGKDGMDVCREVRAANLQIPII 78 Query: 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TG------ 129 ++ + + G DD V KP REILARV A RR + +N A+ TG Sbjct: 79 MLTAKDGEIDKVLGLELGADDYVTKPFSTREILARVKAQMRRQQKPDNSADNTGGTSAGG 138 Query: 130 -PIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 +R+F D ++ GE L RE ++ YL N GK + + + A++G F+ Sbjct: 139 QGLRLFELFIDTDMYMVYKSGEALDLTHREYELVYYLARNAGKVMTREHLLQAVWG-FEY 197 Query: 184 AVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218 + V+ I +LR+K+ N + + ++R LGY Sbjct: 198 FGDVRTVDVTIRRLREKIEENPSKPEYILTRRGLGY 233 >gi|290352129|dbj|BAI78775.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + PL +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEIPLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|168185490|ref|ZP_02620125.1| subtilin biosynthesis regulatory protein SpaR [Clostridium botulinum C str. Eklund] gi|169296516|gb|EDS78649.1| subtilin biosynthesis regulatory protein SpaR [Clostridium botulinum C str. Eklund] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 3/157 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R IR P+I ++ Q + G DD ++KP E+ ARVAA RR + Sbjct: 62 LCRQIRNLVDCPIIFLTAKTMEQDIVMGLSLGGDDYISKPFGISELRARVAAHLRREHRE 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N ++ ++ ++ P + E I E L N G+ +K +I+ ++G++ Sbjct: 122 KQNAFCVSDVKFNITSKEAYYNEKLVPFTKSEYSICECLAINHGQVFSKERIYEKVFGVY 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +VE HI +R KL++ +G +P+++ +GY Sbjct: 182 GNSDTTAIVE-HIKNIRSKLKS-IGINPIETVWGIGY 216 >gi|83644483|ref|YP_432918.1| response regulator [Hahella chejuensis KCTC 2396] gi|83632526|gb|ABC28493.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 223 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE++L R + P++ ++ + + D+G DD + KP E+ AR + Sbjct: 59 GEQILSELR--KRKDTTPVLILTAREQVDDRIKLLDAGADDYLTKPFDFGELEARCRVLM 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + S+N + G + + V E L RE R+LE + N G+ ++K ++ Sbjct: 117 RRNQGFSSNLSRHGNLSFDRSAKAVYVNDEKLDLKNREFRLLEVFLGNLGRVMSKEELAD 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 ++ FDE+ N +E +I++LRKKL Sbjct: 177 RLFA-FDESPGPNAIELYIARLRKKL 201 >gi|26249595|ref|NP_755635.1| DNA-binding transcriptional regulator QseB [Escherichia coli CFT073] gi|227887735|ref|ZP_04005540.1| DNA-binding transcriptional regulator QseB [Escherichia coli 83972] gi|300973288|ref|ZP_07172127.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|301048153|ref|ZP_07195190.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|26110003|gb|AAN82208.1|AE016766_296 Transcriptional Regulatory protein qseB [Escherichia coli CFT073] gi|227835131|gb|EEJ45597.1| DNA-binding transcriptional regulator QseB [Escherichia coli 83972] gi|300299989|gb|EFJ56374.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|300410868|gb|EFJ94406.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|307555121|gb|ADN47896.1| transcriptional regulatory protein QseB [Escherichia coli ABU 83972] gi|315295065|gb|EFU54402.1| response regulator receiver domain protein [Escherichia coli MS 153-1] Length = 219 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 21/227 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIGK 56 +LI+D L+ DG G+S GF F + Q SA D ++ L G Sbjct: 3 ILLIEDDMLIGDGI-----KTGLSKMGFRVDWFTQGRQGKEALYSAPYDAVILDLTLPGM 57 Query: 57 -GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G +L R R Q P++ ++ +L ++ G DD + KP E+ AR+ A Sbjct: 58 DGRDIL---REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEA 114 Query: 115 IYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR ++N G + + R + GE L +E +LE LM N G+ + + I Sbjct: 115 LMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 175 EEKLY-TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|322514296|ref|ZP_08067353.1| two component response regulator [Actinobacillus ureae ATCC 25976] gi|322119815|gb|EFX91839.1| two component response regulator [Actinobacillus ureae ATCC 25976] Length = 221 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 73/140 (52%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLKV 121 L R + H +P++ ++ +L + F+SG DD + KP E++ R+ A+ RR + Sbjct: 63 LKRWRKEHQDIPVLILTARDTLDDRILGFNSGADDYLCKPFALMEVVVRLQALVRRRYQQ 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S++ G +R+ ++ + L +E ++L+ ++N+ K + ++ I +Y + Sbjct: 123 SSSEIVIGSLRIDNNTHSATLADNPIILTSKEFQLLQLFVSNKDKVLTRSSIEEKLYS-W 181 Query: 182 DEAVEENVVESHISKLRKKL 201 D V N +E +I LRKKL Sbjct: 182 DNDVGSNTLEVYIHNLRKKL 201 >gi|320194319|gb|EFW68950.1| Putative two-component system response regulator YedW [Escherichia coli WV_060327] Length = 260 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +++ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHTLNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254 >gi|317124381|ref|YP_004098493.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588469|gb|ADU47766.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 225 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 9/145 (6%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA + +P++ ++ T+ D+G DD V KP E+LARV A+ RR Sbjct: 60 LEVCRRLRAEGRSIPVLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR- 118 Query: 120 KVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + TG +R+ SDGR +GE L +E +L L+ +GK V + Q+ ++ Sbjct: 119 -TPTDVGPTGELVRIDSDGRRAWFKGEELQLTAKEFDVLRVLIREQGKVVPREQLMREVW 177 Query: 179 GLFDEAV--EENVVESHISKLRKKL 201 D A ++ HIS LR+KL Sbjct: 178 ---DTAWFGSTKTLDMHISVLRRKL 199 >gi|291461067|ref|ZP_06026728.2| DNA-binding response regulator ArlR [Fusobacterium periodonticum ATCC 33693] gi|291379171|gb|EFE86689.1| DNA-binding response regulator ArlR [Fusobacterium periodonticum ATCC 33693] Length = 233 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 22/194 (11%) Query: 14 GYI---ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70 GYI A G++G+ L NS DV ++ L K K EL + R Sbjct: 34 GYIVSSAYDGEEGLELFTKNSY------------DVVLLDLMLPKKSGK--ELCQEFRKL 79 Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 + P+I + ++ ++ D G +D + KP E+LAR+ + R + S+++ Sbjct: 80 TDTPIIITTAKDNVLDKVELLDLGANDYICKPFAIEELLARIRVVTRNRETSSDKQIYFE 139 Query: 131 IRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 + D +V Q E+ L + E ILEY M NR ++ +I + ++G +D EE Sbjct: 140 NEIKLDLTTKKVFINQKEI-SLTKTEFLILEYFMKNRAISCSREKILTGVWG-YDFDGEE 197 Query: 188 NVVESHISKLRKKL 201 +V+ +I+ LRKK+ Sbjct: 198 KIVDVYINSLRKKM 211 >gi|182680313|ref|YP_001834459.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636196|gb|ACB96970.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 252 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 27/212 (12%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQ---VPLIGISD 80 EGF E ++ AR D S + L+ G LE+ R IRA + +P+I ++ Sbjct: 46 EGFEVESLECGDEAEARLDESLPDLVLLDWMLPGVSGLEICRRIRAREKTRALPIIMLTA 105 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS--DGR 138 + +G DD + KP E++ARV A+ RR + P R+ Sbjct: 106 RGEESEKIRGLATGADDYIVKPFSVPELMARVRALLRRSR---------PDRITGLLTAG 156 Query: 139 DPEVQGEVFPLPRRER---------RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 D + E + + R ER R+L++LM G+ ++ Q+ ++G E ++E Sbjct: 157 DLSLDRENWRVHRGERHVHLGPTEFRLLDHLMGRPGRVFSRAQLLDGVWGEAAE-IDERT 215 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V+ H+ +LRK L DP+ + R GYS D Sbjct: 216 VDVHVGRLRKALSIGEEQDPIRTVRGAGYSFD 247 >gi|119476332|ref|ZP_01616683.1| two-component system regulatory protein [marine gamma proteobacterium HTCC2143] gi|119450196|gb|EAW31431.1| two-component system regulatory protein [marine gamma proteobacterium HTCC2143] Length = 232 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 2/148 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GP 130 Q P++ ++ Q ++ ++G DD V KP E+ AR+ A+ RR S + + GP Sbjct: 72 QFPILILTARSDWQDKVEGLEAGADDYVVKPFQMEEVNARINALLRRSAGSCKPSMSFGP 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + + L E LEYL N GK V+KT++ +Y D + NV+ Sbjct: 132 LTINTTSKVALIGNTEMTLTSYEYNTLEYLAHNAGKVVSKTELTEHLYSQ-DFERDSNVI 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E I +LRKK+ + + R GY Sbjct: 191 EVFIGRLRKKIDPDNQLKAIVTVRGQGY 218 >gi|21693597|gb|AAM75361.1|AF521648_1 PhoB [Pseudomonas syringae] Length = 230 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 104/213 (48%), Gaps = 23/213 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 +++DD A +++ IA+ + + G++ LE + + A + D+ ++ L G Sbjct: 6 ILIVDDEAPIRE-MIAV----ALEMAGYDCLEADNAQDAHAIIVDRKPDLILLDWMLPG- 59 Query: 57 GEKVLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ S +P+I ++ + + GVDD + KP RE++AR+ Sbjct: 60 GTSGIELARRLKREELTSDIPIIMLTAKGEEDNKIQGLEVGVDDYITKPFSPRELVARLK 119 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR +++ + PI + DP + G + E R+L++ M ++ + Sbjct: 120 AVLRRAGPADSES---PIEIGGLLLDPISHRVTIDGTPAEMGPTEYRLLQFFMTHQERAY 176 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ ++G + VEE V+ HI +LRK L Sbjct: 177 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 208 >gi|28199836|ref|NP_780150.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|71275218|ref|ZP_00651505.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71899561|ref|ZP_00681717.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|170731213|ref|YP_001776646.1| response regulator receiver protein [Xylella fastidiosa M12] gi|182682586|ref|YP_001830746.1| two component transcriptional regulator [Xylella fastidiosa M23] gi|28057957|gb|AAO29799.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|71164027|gb|EAO13742.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71730690|gb|EAO32765.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|167966006|gb|ACA13016.1| response regulator receiver protein [Xylella fastidiosa M12] gi|182632696|gb|ACB93472.1| two component transcriptional regulator, winged helix family [Xylella fastidiosa M23] gi|307578868|gb|ADN62837.1| two component transcriptional regulator [Xylella fastidiosa subsp. fastidiosa GB514] Length = 231 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 14/199 (7%) Query: 33 EFEEWLQSSAREDVSAIEAFL--------IGKGEKVLELPRIIRAHS---QVPLIGISDY 81 EFE S ARE + I + + G LEL R R S ++P+I ++ Sbjct: 26 EFESLQASDAREAQAVIADCVPDLILLDWMLPGTSGLELTRRWRKASLTREIPIIMLTAR 85 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE 141 + ++GVDD + KP RE+LAR+ A+ RR + ++ DG Sbjct: 86 SEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMRRTRDDEEDGSVAIGKLRIDGAAHR 145 Query: 142 V-QGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 V G V P+ E R+L + M + + ++TQ+ ++G +EE ++ HI +LR+ Sbjct: 146 VYAGHVQVPIGPTEYRLLHFFMTHSERVYSRTQLLDHVWG-SGVYIEERTIDVHIRRLRR 204 Query: 200 KLRNKLGFDPVDSKRFLGY 218 L D V + R GY Sbjct: 205 TLEPFGLDDMVQTVRSAGY 223 >gi|317057288|ref|YP_004105755.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315449557|gb|ADU23121.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 6/150 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + P++ +S L+ F G DD + KP ++A++ I++R + + Sbjct: 67 LREQADTPILIVSCRTDKDDKLNGFGLGADDYIEKPYDIDILIAKIKGIFKRRYQLDTIS 126 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G +D R E+ GE L +E +L L+ N+ K + K +F+ ++G D E Sbjct: 127 ADGVKLNLAD-RTAEIDGEAVELTVKEFDLLTLLVQNKDKVLKKEYLFNNVWG-SDSDSE 184 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + HI++LR+ KLG DP +KR L Sbjct: 185 MQTLHVHINRLRQ----KLGDDPKSAKRLL 210 >gi|303229816|ref|ZP_07316596.1| putative response regulator ArlR [Veillonella atypica ACS-134-V-Col7a] gi|303231718|ref|ZP_07318441.1| putative response regulator ArlR [Veillonella atypica ACS-049-V-Sch6] gi|302513667|gb|EFL55686.1| putative response regulator ArlR [Veillonella atypica ACS-049-V-Sch6] gi|302515576|gb|EFL57538.1| putative response regulator ArlR [Veillonella atypica ACS-134-V-Col7a] Length = 224 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 2/149 (1%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129 + P++ ++ SLQ + ++G DD + KP E+ AR+ A+ RR + + N + G Sbjct: 71 NTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNARHAQNDIKVG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P+ + R + GE L +E +L YL +N +++ QI ++ +D N+ Sbjct: 131 PLTINVPQRTVKRDGEAITLTAKEFDLLYYLASNENIVLSRQQILDHVWE-YDYESYSNL 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ +I LRKK+ + + R +GY Sbjct: 190 IDVYIKDLRKKIDTDENVKLIQTVRGVGY 218 >gi|255065068|ref|ZP_05316923.1| QseB protein [Neisseria sicca ATCC 29256] gi|255050489|gb|EET45953.1| QseB protein [Neisseria sicca ATCC 29256] Length = 223 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 8/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L +I SQ P++ ++ L + L+ D G DD + KP E+ AR+ A+ RR Sbjct: 63 LTQIRHEGSQTPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLRRHSGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S G + + EV+GE P L +E +L+ LM G ++++ + IYG Sbjct: 123 SQTLLTNGALTLNPATYQVEVKGENKPVLLSNKEFAVLQALMMRPGIILSRSDLEDKIYG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E VE N V+ I LRK KLG + + + R +G+ + Sbjct: 183 -WGEEVESNAVDFLIHALRK----KLGKEHIQNVRGVGWLV 218 >gi|239994087|ref|ZP_04714611.1| transcriptional regulator [Alteromonas macleodii ATCC 27126] Length = 229 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 85/171 (49%), Gaps = 15/171 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +L+ R R ++V ++ P + ++ +G DD ++KP E+ AR+ ++ Sbjct: 59 GMAILKTLRKRRVETKVLILSARAEP--EEKVEGLLAGADDYLSKPFSFEELSARLLSLM 116 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVF-------PLPRRERRILEYLMANRGKRVA 169 RR V+N + ++ +G ++Q + F L E RI+E + N+GK V Sbjct: 117 RR-GVTNCIND----QITINGLILDIQAKSFLFGEQAISLTPNEYRIVECMFLNKGKVVT 171 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ I G +D + +N +E+H+S RKK+R P+ SKR GY + Sbjct: 172 SEKLSEFISGSYD-YISKNAIEAHLSSARKKVRACGATLPIKSKRGFGYVV 221 >gi|261856844|ref|YP_003264127.1| PhoB family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261837313|gb|ACX97080.1| two component transcriptional regulator PhoB, winged helix family [Halothiobacillus neapolitanus c2] Length = 230 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 17/157 (10%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 VP++ ++ + + ++G DD + KP RE++AR+ A+ RR ++ +E G I Sbjct: 78 VPIVMLTARGEEEDKVSGLEAGADDYITKPFSPRELMARIKAVLRR---ASPDSEGGVIE 134 Query: 133 VFSDGRDPE--------VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 V DPE V EV P E R+L + M + + ++TQ+ I+G + Sbjct: 135 VAGLRLDPESHRVTGGSVDIEVGPT---EFRLLTFFMTHPERVFSRTQLLDRIWGR-NAY 190 Query: 185 VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 VEE V+ HI +LRK L GFD + + R +GY + Sbjct: 191 VEERTVDVHILRLRKALVPS-GFDALIQTVRGVGYRL 226 >gi|115523977|ref|YP_780888.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115517924|gb|ABJ05908.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 219 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 18/185 (9%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100 D + +A ++ G VL+ ++R A +P++ ++ S + + G DD + Sbjct: 41 DSAIYDAVILDLGLPVLDGLAVLRRWRAAKRSMPVLILTARGSWREKVMGLREGADDYLT 100 Query: 101 KPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERR 155 KP E+LAR+ A+ RR ++ A + I V DP Q EV L E R Sbjct: 101 KPFEMEELLARIEALIRR---ASGHASS-VIDVAGLRLDPAAQRIVRNDEVLDLTSLEYR 156 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 L Y M + K V+KT++ IYG D+ + NV+E +++LRK K+G + + ++R Sbjct: 157 ALSYFMMHPAKVVSKTELTEHIYGQDDDR-DSNVIEVLVNRLRK----KIGAELIRTRRG 211 Query: 216 LGYSI 220 GY + Sbjct: 212 QGYEL 216 >gi|89074320|ref|ZP_01160802.1| transcriptional regulator [Photobacterium sp. SKA34] gi|89049807|gb|EAR55348.1| transcriptional regulator [Photobacterium sp. SKA34] Length = 223 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 27/151 (17%) Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG 144 Q +D G DD V KP E+ ARV AI RR + P+ + E++G Sbjct: 85 QDRIDGLMQGADDYVTKPFSFDELHARVVAISRRCQ---------PVSI---ANTIEIEG 132 Query: 145 EVFPLPRR--------------ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + L + E +I++YL +RG+ + + I I FD + +N + Sbjct: 133 FLLDLNNKTLFYGNYDLDLTPNEFKIIDYLFNHRGQILTASMISDNITNNFD-YISKNTI 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E HIS +RKK +N P+ +KR GY ++ Sbjct: 192 EVHISSMRKKSKNIEAVLPIKNKRGFGYYVE 222 >gi|256027680|ref|ZP_05441514.1| two-component response regulator [Fusobacterium sp. D11] Length = 201 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 3/142 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + R + P+I I+ S+ ++ D G +D + KP E+LAR+ R + Sbjct: 39 ELCQEFRKLNNTPIIIITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKEN 98 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S ++ I++ + +Q E L + E ILEY M N+G ++ +I ++G Sbjct: 99 SVDKQFYLEKDIKLDLSAKRVYLQEEEVNLTKTEFLILEYFMKNKGLSCSREKIIIGVWG 158 Query: 180 LFDEAVEENVVESHISKLRKKL 201 +D EE +V+ +I+ LRKK+ Sbjct: 159 -YDFDGEEKIVDVYINSLRKKI 179 >gi|218709844|ref|YP_002417465.1| DNA-binding response regulator [Vibrio splendidus LGP32] gi|218322863|emb|CAV19040.1| DNA-binding response regulator [Vibrio splendidus LGP32] Length = 219 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 12/153 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P+I +S +L ++ ++G DD + KP E++AR+ A RR S + A I Sbjct: 73 TPVIILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGSAAPILQIG 130 Query: 133 VFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 S D R +V QG+ L E +++ Y M N+ K +++T++ IY FD + N Sbjct: 131 DLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNQNKVISRTELVEHIYKQDFDR--DSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE I ++RKK+ K+ + + R LGY ++ Sbjct: 189 TVEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217 >gi|209519930|ref|ZP_03268711.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209499632|gb|EDZ99706.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 221 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 57 GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ LE+ IRA +PL+ I+ L L D G DD V KP E+LAR+ A+ Sbjct: 56 GKDGLEVLVRIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVLKPFQMAELLARIRAV 115 Query: 116 YRRLKVSNNRA-ETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR S A G + + ++ V G L RE +L+ L+ G ++++++ Sbjct: 116 LRRKGGSAAPALSNGVLSLDPATKEASVSGGSPLQLSNREFSLLQALLVRPGAILSRSEL 175 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 IYG + E VE N VE I LR+ KLG + + + R +G+ + Sbjct: 176 EDRIYG-WGEEVESNAVEYLIHALRR----KLGSEVIKNVRGVGWMV 217 >gi|169795463|ref|YP_001713256.1| putative two component heavy metal response transcriptional regulator [Acinetobacter baumannii AYE] gi|260549449|ref|ZP_05823668.1| transcriptional activator protein irlR [Acinetobacter sp. RUH2624] gi|332855218|ref|ZP_08435769.1| transcriptional activator protein Irlr [Acinetobacter baumannii 6013150] gi|169148390|emb|CAM86255.1| putative Two component heavy metal response transcriptional regulator [Acinetobacter baumannii AYE] gi|260407558|gb|EEX01032.1| transcriptional activator protein irlR [Acinetobacter sp. RUH2624] gi|332727595|gb|EGJ59017.1| transcriptional activator protein Irlr [Acinetobacter baumannii 6013150] Length = 228 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 83/160 (51%), Gaps = 8/160 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123 +++R S++P+I ++ + + + G DD + KP + E+LAR+ ++ RR + + Sbjct: 69 QVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQYLQE 128 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182 N +++ G G + L + E +L YL+ N+ + V + QI S ++ + FD Sbjct: 129 NELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWNINFD 188 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 + N ++ + +LR K+ G++P + + R LGY I Sbjct: 189 --TDTNFIDVAVRRLRSKIDE--GYEPKLIHTIRGLGYKI 224 >gi|117617627|ref|YP_854723.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559034|gb|ABK35982.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 231 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 96/201 (47%), Gaps = 21/201 (10%) Query: 24 VSLEGFN---SLEFEEWLQSSAREDVSAIEA-FLIGKGEKVLELPRIIRAHSQVPLIGIS 79 ++LEGF + + EE LQ A + + + ++ K L R+ + H P++ ++ Sbjct: 21 LTLEGFQVTVAEDGEEGLQLLAEQHFNLVLLDVMMPKLNGFAMLARLRKTHD-TPVLMLT 79 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR--AETGPIRVFSDG 137 Q ++ ++G DD + KP RE+LARV AI RR + + + + +R Sbjct: 80 ARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRRTQSTQPQRGGSSEEVRFMDLV 139 Query: 138 RDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL----FDEAVEEN 188 P +Q GE+ L E +LE L+ N G+ V+K+Q+ + G FD A Sbjct: 140 LQPGLQQASCHGELLELTATEFGLLECLLRNPGQIVSKSQLSELVLGKKLEPFDRA---- 195 Query: 189 VVESHISKLRKKLRNKLGFDP 209 ++ H+S LRKKL + P Sbjct: 196 -IDMHLSNLRKKLPERTDGQP 215 >gi|20807256|ref|NP_622427.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20515763|gb|AAM24031.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 224 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 77/144 (53%), Gaps = 3/144 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + IR S+VP++ I+ L F+ G DD V KP RE++ARV AI R S Sbjct: 65 LLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRTYGS 124 Query: 123 NNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +T + D R+ V G+ L +E +L+ L+ N+GK V++ + + ++G Sbjct: 125 QDDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCLNEVWG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNK 204 +D + V++HI +LR+KL K Sbjct: 184 YDFYGDLRTVDTHIKQLREKLGEK 207 >gi|51893145|ref|YP_075836.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51856834|dbj|BAD40992.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 229 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 17/187 (9%) Query: 31 SLEFEEWLQSSAREDVSAIEAFLIG-----------KGEKVLELPRIIRAHSQVPLIGIS 79 SLE E + ++A + A+ F G G L + R +RA P+I ++ Sbjct: 20 SLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLTICREVRAAGMTPIIMLT 79 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-----NRAETGPIRVF 134 + + G DD + KP + RE++AR+ A+ RR + ++ R G + + Sbjct: 80 AKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEAASRQDRAGRLVVGDLVLH 139 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 R EV G L RE +LE L + G + ++ ++G +D A +E V+ H+ Sbjct: 140 PRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDLVWG-YDFAGDERTVDVHV 198 Query: 195 SKLRKKL 201 ++R+KL Sbjct: 199 RRIREKL 205 >gi|254237307|ref|ZP_04930630.1| two-component response regulator CreB [Pseudomonas aeruginosa C3719] gi|126169238|gb|EAZ54749.1| two-component response regulator CreB [Pseudomonas aeruginosa C3719] Length = 229 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122 +R S+VP+I ++ + + + G DD V KP RE+ ARV AI +R+ Sbjct: 67 LRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAPRPAAL 126 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 A +GP +V + + L R E R+L+ L+ + ++ Q+ A+ G+ Sbjct: 127 EGAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL-GVAS 185 Query: 183 EAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYS 219 EA E ++SHI LR KLR N+ G + + + R LGYS Sbjct: 186 EAGYERNIDSHIKSLRAKLRQVNERG-EAIQTHRGLGYS 223 >gi|301067694|ref|YP_003789717.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|300440101|gb|ADK19867.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] Length = 233 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 17/169 (10%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR SQVP+I ++ + + G DD + KP E++ARV R +N Sbjct: 68 RKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALR-----HN 122 Query: 125 RAETGPIRVFS------DGRDPEVQ-GEV-FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R P +F D + VQ GEV PL +RE +L L+A++ + ++ + A Sbjct: 123 RQAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDA 182 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223 ++G FD + N+++ +I LR K+ + G + + R +GY + N Sbjct: 183 VWGTDFDG--QPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229 >gi|302875608|ref|YP_003844241.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307690139|ref|ZP_07632585.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302578465|gb|ADL52477.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 222 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 99/198 (50%), Gaps = 29/198 (14%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV---LELPRI--------IRAHSQ 72 +S EGF +E A + VSAIE F + + L LP++ IR S Sbjct: 21 LSKEGFEIIE--------AVDGVSAIEKFKNNNIDLIVLDLMLPKLNGITVCSKIREISD 72 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 V +I ++ + L +++G DD + KP + ++A++ A+ +R+K + E G ++ Sbjct: 73 VHIIMLTAKSQEEDKLIGYETGADDYITKPFSPKVLVAKIKAVLKRIK--EDEKEDGVLQ 130 Query: 133 VFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 F D R+ + GE L +E ++ YL N+G +++ I ++G FD + Sbjct: 131 -FDDLIINELSREVILSGETLDLTPKEIDLILYLAKNKGIALSREHILEKVWG-FDYEGD 188 Query: 187 ENVVESHISKLRKKLRNK 204 V++++ +LR+KL++K Sbjct: 189 IRTVDTNVKRLRQKLKDK 206 >gi|237744204|ref|ZP_04574685.1| two-component response regulator [Fusobacterium sp. 7_1] gi|229431433|gb|EEO41645.1| two-component response regulator [Fusobacterium sp. 7_1] Length = 227 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 5/159 (3%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 DV ++ L K K EL + R + P+I I+ S+ ++ D G +D + KP Sbjct: 50 DVILLDLMLPKKSGK--ELCQEFRKLNNTPIIIITAKDSILDKVELLDLGANDYICKPFA 107 Query: 105 HREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LAR+ R + S ++ I++ + +Q E L + E ILEY M Sbjct: 108 MEELLARIRVATRNKENSVDKQFYLEKDIKLDLSAKRVYLQEEEVNLTKTEFLILEYFMK 167 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 N+G ++ +I ++G +D EE +V+ +I+ LRKK+ Sbjct: 168 NKGLSCSREKIIIGVWG-YDFDGEEKIVDVYINSLRKKI 205 >gi|121607358|ref|YP_995165.1| two component transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121551998|gb|ABM56147.1| two component transcriptional regulator, winged helix family [Verminephrobacter eiseniae EF01-2] Length = 226 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 83/163 (50%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ + +R +P++ ++ S+ + D G DD + KP +E+ ARV A+ RR Sbjct: 61 LEVLKKLRGRGMALPVLILTAADSVDERVKGLDLGADDYMAKPFSLQELEARVRALTRRG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + +++ GP+ GR + G++ L RE +L L+ G+ V+K Q+ + Sbjct: 121 MGGTSSAIRHGPLVYDQAGRVATIDGKMIELSARELGLLGVLLQRVGRLVSKEQLVERLC 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E +I +LRKK+ G + + R LGY ++ Sbjct: 181 E-WSEEVSNNAIEVYIHRLRKKIEG--GPIRIATVRGLGYCLE 220 >gi|90415561|ref|ZP_01223495.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2207] gi|90332884|gb|EAS48054.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2207] Length = 240 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/232 (25%), Positives = 110/232 (47%), Gaps = 28/232 (12%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLE--GFNSLEFEEWLQSSA-----REDVSAIEAFLI 54 +++DD A ++D ++LE GFN L+ + Q+ A + D+ ++ + Sbjct: 13 ILIVDDEAAIRDML-------SIALEAAGFNVLQADNAQQAHASIIDNQPDLVLLDWMM- 64 Query: 55 GKGEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 G LEL R ++ ++ P+I ++ + + DSG DD + KP RE+++R Sbjct: 65 -PGTTGLELLRRLKRDELTAKTPIIMLTAKAEEDSKIAGLDSGADDYIPKPFSPRELISR 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGK 166 V A+ RR+ A PI + DP + GE L E R+L++ + ++ + Sbjct: 124 VNAVLRRI---GREALKEPISIGELIFDPLGHRVSIAGEPINLGPTEYRLLQFFLTHQER 180 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ QI ++G + ++E V+ HI +LRK + + V + R GY Sbjct: 181 VYSRGQILDYVWG-GNVYLDERTVDVHIRRLRKAISVAGHENYVQTVRGAGY 231 >gi|296135166|ref|YP_003642408.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295795288|gb|ADG30078.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 258 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 70/138 (50%), Gaps = 20/138 (14%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR---DPEVQ---- 143 D+G DD V KP E+ AR+ A+ RR + RAE VFS GR +P Sbjct: 91 LDAGADDYVLKPYDLDELSARIRALLRR---AAGRAEP----VFSYGRISLNPATHEALL 143 Query: 144 -GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 GE L +RE +LE L+A G +++ Q+ +Y DE + N VE ++ LRK Sbjct: 144 DGEPVALSQREWAVLEALIARPGMILSRAQLEEKLYSWKDE-ISSNAVEVYVHSLRK--- 199 Query: 203 NKLGFDPVDSKRFLGYSI 220 KLG D + + R +GY I Sbjct: 200 -KLGPDLIRNIRGMGYMI 216 >gi|261409749|ref|YP_003245990.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286212|gb|ACX68183.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 232 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 36/227 (15%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L +GY D+GV +LE + S E D+ ++ L G +EL R IR Sbjct: 22 LESEGYQVTKADNGVDALEAYRSQEV----------DLILLDVML--PGMSGIELLRRIR 69 Query: 69 AH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------- 118 AH S ++ ++ S++ + D G +D + KP E+LAR+ A R Sbjct: 70 AHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQGKPHPEEE 129 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 L ++ + G V DGR L RE +L YL+ N+ + + + QI Sbjct: 130 PAGEWLTAADLKLNEGTREVIRDGRR-------IDLTPREFDLLVYLLKNKRQVLNREQI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +A++G +D + NVV+ +I +RKK+ + + + R +GY + Sbjct: 183 LAAVWG-YDYYGDTNVVDVYIRYVRKKIDYGGTQELIHTVRGVGYVL 228 >gi|170759409|ref|YP_001787536.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169406398|gb|ACA54809.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 223 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 8/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + R IR S VP+I ++ S L + G DD V KP + +LAR+ I +R Sbjct: 63 ICREIRKTSDVPIIIVTSRDSEVDELISMNLGADDFVTKPYNTEILLARITNILKRTYGN 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 LK +NN + + + L + E +IL YL+ NRG V + + ++ Sbjct: 123 LK-TNNTLNYKDFNLNLSNATIIYKDKSLELTKNEVKILSYLINNRGNIVKRDSLMEYLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 D V+++ + +I++LRKKL+ ++G +P++++R LGY Sbjct: 182 K-SDYFVDDSTLTVNINRLRKKLQ-EIGIENPIETRRGLGY 220 >gi|85059060|ref|YP_454762.1| DNA-binding transcriptional regulator PhoP [Sodalis glossinidius str. 'morsitans'] gi|84779580|dbj|BAE74357.1| two-component response regulator protein [Sodalis glossinidius str. 'morsitans'] Length = 223 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/223 (23%), Positives = 105/223 (47%), Gaps = 5/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D +L++ + + G ++ ++ + D++ ++ L E L Sbjct: 4 LVIEDNSLLRHHLMVQMREMGHQVDAAADAREADYFLNEHPPDIAIVDLGL--PDEDGLN 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R+H ++PL+ ++ Q + ++G DD V KP H E++AR+ A+ RR Sbjct: 62 LIRRWRSHQVKIPLLVLTAREGWQDKVTVLEAGADDYVTKPFHLEEVVARMQALMRRNSG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ E P + R+ + L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVIELPPFLIDLSRRELMINEVNIRLTAFEYTIIETLIRNAGKVVSKDSLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E E + ++ + +LRKK++ ++ + + R GY D N Sbjct: 181 DAELRESHTIDVLMGRLRKKMQANYPYEVITTVRGQGYRFDVN 223 >gi|62389763|ref|YP_225165.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|41325098|emb|CAF19579.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 255 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 100/211 (47%), Gaps = 18/211 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGE 58 +++DD V+D +S G+N + E+ +Q+ +E + + ++ G Sbjct: 26 ILVVDDEQAVRDSL-----RRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGM 80 Query: 59 KVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ R +R+ P++ ++ ++ + D+G DD + KP E+LARV ++ R Sbjct: 81 DGLEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVR 140 Query: 118 RLKVSNNRAET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 R V +N++ + G + + + RD G L R E +L+ L+ N+ K + Sbjct: 141 RSAVESNQSSSIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLT 200 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 + QI ++G D N +E +I LR+K Sbjct: 201 RAQILEEVWGC-DFPTSGNALEVYIGYLRRK 230 >gi|307129681|ref|YP_003881697.1| putative two-component system response regulator [Dickeya dadantii 3937] gi|306527210|gb|ADM97140.1| Putative two-component system response regulator [Dickeya dadantii 3937] Length = 226 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 8/167 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ R +R + +P+I ++ + + G DD V KP + RE++AR+ A+ RR + Sbjct: 60 IDVLRQVRRNRSIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYE 119 Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++E G + + R E +G+ F L E +LE LM + + V K ++ Sbjct: 120 DKAEKSEDTGTLNYGELAICPSTRSSEWRGKAFDLTASEFNLLELLMRSSERVVTKDELS 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 G EA + + V+ HIS +R+KL G + +++ R +GY I Sbjct: 180 EKCLGRRREAYDRS-VDVHISNIRQKLAALDGCNLTIETVRSVGYRI 225 >gi|167757440|ref|ZP_02429567.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402] gi|167703615|gb|EDS18194.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402] Length = 219 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R Q P+I ++ + ++ G DD + KP E+LAR+ A+ RR+ Sbjct: 62 IEVCRRLREIKQTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRMN 121 Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQI 173 E G +++ DP F L E +L L+ N G V++ +I Sbjct: 122 FQKALLEYSYGEVKI-----DPSKHKVFFKDNEVNLTTTEFDLLSLLVQNGGDVVSRNKI 176 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +DE V NVVE +I + LRNK+ +++ R +GY + Sbjct: 177 LDQVWG-YDEDVSTNVVEVYI----RYLRNKIPGIKIETVRGVGYRL 218 >gi|84393831|ref|ZP_00992576.1| DNA-binding response regulator [Vibrio splendidus 12B01] gi|86148079|ref|ZP_01066380.1| DNA-binding response regulator [Vibrio sp. MED222] gi|84375526|gb|EAP92428.1| DNA-binding response regulator [Vibrio splendidus 12B01] gi|85834139|gb|EAQ52296.1| DNA-binding response regulator [Vibrio sp. MED222] Length = 219 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 12/153 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P+I +S +L ++ ++G DD + KP E++AR+ A RR S + A I Sbjct: 73 TPVIILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGSAAPILQIG 130 Query: 133 VFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 S D R +V QG+ L E +++ Y M N+ K +++T++ IY FD + N Sbjct: 131 DLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNQNKVISRTELVEHIYKQDFDR--DSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE I ++RKK+ K+ + + R LGY ++ Sbjct: 189 TVEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217 >gi|150016605|ref|YP_001308859.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903070|gb|ABR33903.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 225 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 94/212 (44%), Gaps = 16/212 (7%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K GY+ + DDG S E E++ I ++ + R IR Sbjct: 23 LKKQGYVTIEADDGKKAMNLFSNE----------ENIDLIILDVMLPEYDGFTVCREIRK 72 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET- 128 S+VP+I ++ + D G D+ ++KP ++ARV A+ RR + E Sbjct: 73 KSKVPIIMLTARGEEFDEVFGLDIGADEYISKPFSPNILIARVNAVLRRANSEDKGKELK 132 Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + + + GEV L +E +L YL N GK +++ QI ++G +D + Sbjct: 133 DFNGLTIDHSAHQVVIDGEVVDLSPKEYELLIYLSENYGKALSREQILDKVWG-YDYYGD 191 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V++HI++LR KL K D + + R GY Sbjct: 192 LRTVDTHINRLRIKLDRK--SDYIQTVRGYGY 221 >gi|333024364|ref|ZP_08452428.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332744216|gb|EGJ74657.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 219 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 6/132 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD + KP + + ARV A+ RR E G +R+ + R + GE PL Sbjct: 91 LDTGADDYLTKPFSYVVLRARVKALLRRRATGAPPVRELGALRLDTGARRVRLAGEEIPL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +LE+L+ G+ V+K I ++ F + + N+VE ++S LR+ KLG Sbjct: 151 TAKEYAVLEHLVLRAGQVVSKADILEHVWD-FAYSGDPNIVEVYVSTLRR----KLGAGL 205 Query: 210 VDSKRFLGYSID 221 + + R GY ++ Sbjct: 206 IRTVRGAGYLLE 217 >gi|312865265|ref|ZP_07725493.1| putative response regulator MprA [Streptococcus downei F0415] gi|311099376|gb|EFQ57592.1| putative response regulator MprA [Streptococcus downei F0415] Length = 231 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 66/115 (57%), Gaps = 5/115 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGE-VF 147 D+G D+ + KPI +E+LAR+ ++ RRL ++ E G +++ D + E+ Sbjct: 93 LDAGADEYLTKPISLKELLARLRSMERRLDDSFTSRTLECGSVKL--DVSEQEITASNTV 150 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 L +E +++E+ M N K+++ +I+ ++G DE ++ V ++S LR+KL+ Sbjct: 151 RLAGKENKLMEFFMLNPAKKLSTQEIYQQVWGKDDEEANQDYVYVYVSYLRQKLQ 205 >gi|237735491|ref|ZP_04565972.1| two-component system transcriptional regulator [Mollicutes bacterium D7] gi|229381236|gb|EEO31327.1| two-component system transcriptional regulator [Coprobacillus sp. D7] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R Q P+I ++ + ++ G DD + KP E+LAR+ A+ RR+ Sbjct: 63 IEVCRRLREIKQTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRMN 122 Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQI 173 E G +++ DP F L E +L L+ N G V++ +I Sbjct: 123 FQKALLEYSYGEVKI-----DPSKHKVFFKDNEVNLTTTEFDLLSLLVQNGGDVVSRNKI 177 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +DE V NVVE +I + LRNK+ +++ R +GY + Sbjct: 178 LDQVWG-YDEDVSTNVVEVYI----RYLRNKIPGIKIETVRGVGYRL 219 >gi|300775304|ref|ZP_07085166.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] gi|300506044|gb|EFK37180.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] Length = 223 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 12/148 (8%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L I + H + P+I +S S+ + + G DD + KP H E+LAR+ ++ RR Sbjct: 63 LKEIKKMHKKDPVIILSAKDSVDDKVAGLEIGADDYLAKPFHLAELLARIKSVIRR---- 118 Query: 123 NNRAETGPIRVFSDGRDPEVQ------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N+ IR + DPE + GE+ L R+E +L Y + + K + KT + A Sbjct: 119 KNQDGENIIRYKNISIDPESRIVKVGNGELI-LNRKEYDLLYYFVIHPEKTLQKTTLAEA 177 Query: 177 IYGLF-DEAVEENVVESHISKLRKKLRN 203 I+G + D+A + + S I LRKKL+ Sbjct: 178 IWGDYIDQADSLDFIYSQIKNLRKKLKT 205 >gi|167031376|ref|YP_001666607.1| DNA-binding response regulator CreB [Pseudomonas putida GB-1] gi|166857864|gb|ABY96271.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 226 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 103/226 (45%), Gaps = 17/226 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLE--GFNSLEFEEWLQSSAREDVSAIEAFLIGKGE- 58 ++++D A + D + DG S E S ++ Q A D+ ++ IG + Sbjct: 4 ILIVEDEAAIADTLLYALQADGHSTEWVTLGSAALDQQRQRPA--DLIILD---IGLPDI 58 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E R +R ++VP++ +S + + G DD V KP RE+ ARV AI +R Sbjct: 59 SGFETCRQLRRFTEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKR 118 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + RAE + +Q + L R E R+L+ L+ + ++ Q+ Sbjct: 119 MA---PRAEPATVAALFQLDTLRMQITYRSQPLTLTRHEFRLLQCLLEQPQRVFSREQLL 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 A+ G+ + E ++SHI LR KLR G +P+ + R LGYS Sbjct: 176 DAL-GVASDVGYERTIDSHIKSLRAKLRQVASGGEPIQTHRGLGYS 220 >gi|148546454|ref|YP_001266556.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148510512|gb|ABQ77372.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 232 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 86/164 (52%), Gaps = 8/164 (4%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE L + R +R+ Q P++ ++ + D G DD V KP+ R +LAR+ Sbjct: 57 LMLPGEDGLSICRRVRSQYQGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARI 116 Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 A+ RR + +++ + G +R+ + R+ + ++ L E +L L +N G+ + Sbjct: 117 QALLRRSETVDSKRQDLAFGALRIDNRLREAHLGEQLIELTGAEFDLLWLLASNAGRVLT 176 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 + QIF+A+ G+ + ++ ++ ISK+R K+G DP+ + Sbjct: 177 REQIFTALRGVGYDG-QDRSIDIRISKIRP----KIGDDPLQPR 215 >gi|315647964|ref|ZP_07901065.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315276610|gb|EFU39953.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 236 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 81/163 (49%), Gaps = 4/163 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120 EL ++++ +P+I ++ + D G DD + KP RE+L+R+ ++ RR K Sbjct: 72 ELCKLVKERRDIPVIFLTVIDDEVNVVMGLDMGADDYITKPFRVRELLSRIKSVLRRYQK 131 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S+ RA + IR+ + +G PL E R+L + G+ + + Q+ I+ Sbjct: 132 PSHTRAIIDIDHIRINTLEGKVHKKGTEIPLTALEYRLLLIFGNHIGQVLTRNQLLEQIW 191 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + + V +N + +I +LR+KL + G + + R LGY + Sbjct: 192 DVAGDFVNDNTLTVYIKRLREKLEDDPGHPTLIKTVRGLGYKV 234 >gi|293410323|ref|ZP_06653899.1| hypothetical protein ECEG_01281 [Escherichia coli B354] gi|291470791|gb|EFF13275.1| hypothetical protein ECEG_01281 [Escherichia coli B354] Length = 260 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNINITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDEPFPEKLIATIRGMGYS 254 >gi|269796424|ref|YP_003315879.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098609|gb|ACZ23045.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 239 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 10/163 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---V 121 R+ +P++ ++ Q + G DD V KP E++AR+ A+ RR V Sbjct: 70 RMREKGQHMPVLFLTARDDTQDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTHPTPV 129 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + D + G V L E ++L YLM N G+ ++K QI ++ + Sbjct: 130 DDAVLRFADLELDDDSHEVRRAGRVVDLSPTEFKLLRYLMLNPGRVLSKAQILDHVWQ-Y 188 Query: 182 DEAVEENVVESHISKLRKKLRNKL---GFDP---VDSKRFLGY 218 D + N+VES+IS LR+K+ N G P + +KR +GY Sbjct: 189 DWGGDANIVESYISYLRRKIDNAPLPDGSTPEPLIATKRGVGY 231 >gi|163787243|ref|ZP_02181690.1| two-component response regulator [Flavobacteriales bacterium ALC-1] gi|159877131|gb|EDP71188.1| two-component response regulator [Flavobacteriales bacterium ALC-1] Length = 228 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146 FD+G DD + KPI + +L++V A+ RRLK N T G + ++ + +G+ Sbjct: 98 FDAGADDYIAKPIKPKVLLSKVKALLRRLKSDENAVNTIVKIGNLVIYKEEYKITNKGKE 157 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 LPR+E +L L GK + +I ++G + V ++ HI KLR+K+ +K Sbjct: 158 ITLPRKEFELLSLLATKPGKVFKRDEILDKVWG-NEVVVGGRTIDVHIRKLREKIGDK 214 >gi|160880958|ref|YP_001559926.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160429624|gb|ABX43187.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 230 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 10/154 (6%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP- 130 +P++ ++ + + D G DD + KP E+++RV A+ RR N G Sbjct: 80 NIPIMMVTAKTTEMDKVKGLDLGADDYITKPFGIMELVSRVKALLRR--AGGNGQNVGAL 137 Query: 131 ----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + + + V GE L +E +L YL+ N+G +++ +I ++G FD E Sbjct: 138 SFHDVSLHVEKHSVTVDGESCELTYKEFELLRYLLENQGIVLSRDRIMERVWG-FDYEGE 196 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+ HI LR KL G D + + R +GY I Sbjct: 197 SRTVDMHIKTLRHKL--GAGGDIIKTVRNVGYKI 228 >gi|254976797|ref|ZP_05273269.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255094183|ref|ZP_05323661.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255315935|ref|ZP_05357518.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518594|ref|ZP_05386270.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255651714|ref|ZP_05398616.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260684746|ref|YP_003216031.1| two-component response regulator [Clostridium difficile CD196] gi|260688404|ref|YP_003219538.1| two-component response regulator [Clostridium difficile R20291] gi|306521513|ref|ZP_07407860.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|260210909|emb|CBA66124.1| two-component response regulator [Clostridium difficile CD196] gi|260214421|emb|CBE06850.1| two-component response regulator [Clostridium difficile R20291] Length = 223 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 82/185 (44%), Gaps = 20/185 (10%) Query: 36 EWLQSSAREDVSA---IEAFLIGKGEKV--------------LELPRIIRAHSQVPLIGI 78 E++Q ++A +EA I K + + R+ R + +P+I + Sbjct: 19 EYMQKGGYTCITANDGVEALTILKSNNIDLMILDIMMPYLDGFSVCRVSREMTNIPIIIL 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSD 136 + + L ++ G DD + KP + +LA+V A+ RR + N G I + Sbjct: 79 TAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTTDIPKNSLSLGKIFIMVA 138 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 R V+ ++ L +E +L M N + ++ ++ + I+G +D V++HI Sbjct: 139 SRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG-YDFEGNTRTVDTHIKT 197 Query: 197 LRKKL 201 LRKKL Sbjct: 198 LRKKL 202 >gi|92112237|ref|YP_572165.1| two component heavy metal response transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91795327|gb|ABE57466.1| two component heavy metal response transcriptional regulator, winged helix family [Chromohalobacter salexigens DSM 3043] Length = 223 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 20/170 (11%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---- 117 EL R+IR H QVP++ ++ +++ + + G DD + KP E+LARV + R Sbjct: 61 ELLRLIRRHGQVPVLFLTARDAVEYRVKGLELGADDYLVKPFSFVELLARVRTLLRRGPL 120 Query: 118 ----RLKVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQ 172 R +V++ + RV +GE L +E +L+ L+ G+ +++T Sbjct: 121 RERERFQVADLHMDVLKRRV--------TRGETRLALTNKEFALLQLLLEREGEVLSRTL 172 Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I S ++G+ FD + NVVE + +LR K+ + + ++R +GY ++ Sbjct: 173 IASEVWGMNFDS--DTNVVEVAVRRLRAKVDDPFTRRLIHTERGMGYVLE 220 >gi|56420225|ref|YP_147543.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380067|dbj|BAD75975.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 226 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 7/152 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R IR+ S VP++ ++ + G DD V KP E+LAR+ A+ RR Sbjct: 62 ETCRRIRSFSNVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVLRR--T 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R+ + D + V+ E P L +E IL L+ + + ++ QI ++++G Sbjct: 120 AGGRSAIRAAGLVWDEEEHTVRYEDKPIALTPKEFAILGLLLKHPNQVFSRGQIIASLWG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 + EE V+SH+ +R+KLR K GF P D Sbjct: 180 YLAD-TEERTVDSHMKNIREKLR-KAGF-PAD 208 >gi|332765503|gb|EGJ95721.1| qseB transcriptional activator [Shigella flexneri 2930-71] Length = 210 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 6/148 (4%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132 P++ ++ +L ++ G DD + KP E+ AR+ A+ RR ++N G + Sbjct: 65 PVLNLTAREALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVM 124 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + R + GE L +E +LE LM N G+ + + I +Y +DE V N VE Sbjct: 125 LDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY-TWDEEVTSNAVEV 183 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220 H+ LR+ KLG D + + +GY++ Sbjct: 184 HVHHLRR----KLGSDFIRTVHGIGYTL 207 >gi|317488360|ref|ZP_07946918.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325830811|ref|ZP_08164195.1| subtilin biosynthesis regulatory protein SpaR [Eggerthella sp. HGA1] gi|316912532|gb|EFV34083.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325487218|gb|EGC89661.1| subtilin biosynthesis regulatory protein SpaR [Eggerthella sp. HGA1] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 3/163 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G EL R IR P++ ++ S + G DD + KP E+ A+VAA Sbjct: 56 GTDGFELCRAIRGSVDAPIVFLTARSSEDDAVYGLGLGADDYLRKPFGAAELRAKVAAHL 115 Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + A + G +R+ R+ V PL + E + E+L + G+ ++ QI Sbjct: 116 RRERRERKHALSFGALRLDLASREAYVGEAAVPLTKTEFDVCEFLARHPGQAFSRDQIVE 175 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + G +D + + H++ R KL+ G +P+D+ +GY Sbjct: 176 NVLG-WDAESAASTISVHVANARAKLKAA-GAEPIDTVWGVGY 216 >gi|296111273|ref|YP_003621655.1| response regulator [Leuconostoc kimchii IMSNU 11154] gi|295832805|gb|ADG40686.1| response regulator [Leuconostoc kimchii IMSNU 11154] Length = 229 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 75/148 (50%), Gaps = 8/148 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R + P+I ++ S+ + D G DD + KP E+LAR+ ++ RR+ Sbjct: 61 LEVARRLRESKKTPIIMMTARDSVIDRISGLDYGADDYLVKPFAIEELLARIRSLLRRIA 120 Query: 121 V---SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + SN++ +R+ + R ++ L +RE +L L+ N ++ Q+ Sbjct: 121 IETESNDKHRAIINFKDLRIEKENRIARRDNQIINLTKREYDLLLTLVENINVVQSREQL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G FD VE NVV+ +I LR K+ Sbjct: 181 LKEVWG-FDSEVETNVVDVYIRYLRNKI 207 >gi|242372481|ref|ZP_04818055.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242349823|gb|EES41424.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 222 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 D+ ++ L G + L LP I + H+ +I IS + ++ G DD + KP Sbjct: 48 DIVLLDLMLPGISGETL-LPLIKKEHNS-KIIVISAKTDIDEKVNLLSMGADDYITKPFD 105 Query: 105 HREILARVAAIYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 +E+ ARV R + +N E +++ D R ++ + PL E IL LM Sbjct: 106 SKELTARVNVQLRNINNKSNNKELIWKDLKLDKDKRKVTLKNSLIPLTNTEFEILTILMQ 165 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 ++K +++ A+ G++ ++N + H+S +RKK+ Sbjct: 166 EPETAISKQKLYVAVQGVY--IGDDNTISVHVSNIRKKIN 203 >gi|255035592|ref|YP_003086213.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254948348|gb|ACT93048.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 226 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L ++IR P++ +S + D G DD + KPIH E+L+R+ A+ RR Sbjct: 61 QLTQLIRYKKIDTPVLILSALGEADDKIKALDLGADDYLTKPIHFPELLSRINALRRRYD 120 Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +N + V D + G+ L +E R L YLM N+ K + ++QI + Sbjct: 121 MHYSKDNVLVCADLEVNLDTHLVQRAGKEIVLSAKEFRFLVYLMENQNKVLTRSQILQVV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 + + NVV+ +IS LR K+ Sbjct: 181 WST-NMDTYTNVVDVYISYLRNKI 203 >gi|227501322|ref|ZP_03931371.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098] gi|227216555|gb|EEI81961.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098] Length = 219 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 12/157 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S +P+I ++ + D G DD + KP E L+RV A+ RR +N+ Sbjct: 65 IRQFSNLPIIMLTAKSDEFDKVMGLDLGADDYITKPFSILEFLSRVKAVLRR----SNKK 120 Query: 127 ETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +T I R+ + R +V+GE L +E +L ++N G +++ I+G + Sbjct: 121 DTDHISYKEVRLNTKKRSVKVKGEKVDLTYKEFEMLLLFLSNIGNVISRDDFLLKIWG-Y 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D E V+ HI+ LR KL+ + +++ R LGY Sbjct: 180 DYEGETRTVDVHIASLRAKLKESGKY--IETVRNLGY 214 >gi|284993057|ref|YP_003411611.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066302|gb|ADB77240.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 20/215 (9%) Query: 16 IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRA-HS 71 IA F + G+ GF + + + A + ++ G E+ R +RA Sbjct: 13 IAAFVEKGLRANGFATAVVADGRTARAAAASGDFDLMILDIGLPGMDGFEVLRALRADRV 72 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 +P++ ++ S+Q T+ + G DD + KP E+LARV RL++S R + Sbjct: 73 TIPVVILTARDSVQDTVAALEGGADDYMPKPFRFEELLARV-----RLRLSGGRQTETTV 127 Query: 132 RVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 D R + L RE + E + + G+ +A+ Q+ S ++G +D Sbjct: 128 LTCGDLSLDLRTRRAQAGSRTVALSAREFALAETFLRHPGQVLAREQLLSHVWG-YDFDP 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVV+ ++ + LR KLG D +++ R +GY + Sbjct: 187 GSNVVDVYV----RYLRRKLGADRIETVRGMGYRL 217 >gi|110642074|ref|YP_669804.1| transcriptional regulatory protein YedW [Escherichia coli 536] gi|110805939|ref|YP_689459.1| transcriptional regulatory protein YedW [Shigella flexneri 5 str. 8401] gi|227885603|ref|ZP_04003408.1| response regulator [Escherichia coli 83972] gi|237705927|ref|ZP_04536408.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA] gi|300940426|ref|ZP_07155010.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1] gi|300975470|ref|ZP_07173018.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1] gi|300994173|ref|ZP_07180744.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1] gi|301050665|ref|ZP_07197529.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1] gi|306814209|ref|ZP_07448375.1| transcriptional regulatory protein YedW [Escherichia coli NC101] gi|331647562|ref|ZP_08348654.1| transcriptional activator protein CopR [Escherichia coli M605] gi|26108643|gb|AAN80846.1|AE016762_99 Probable transcriptional Regulatory protein yedW [Escherichia coli CFT073] gi|110343666|gb|ABG69903.1| probable transcriptional regulatory protein YedW [Escherichia coli 536] gi|110615487|gb|ABF04154.1| putative 2-component transcriptional regulator [Shigella flexneri 5 str. 8401] gi|226900684|gb|EEH86943.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA] gi|227837176|gb|EEJ47642.1| response regulator [Escherichia coli 83972] gi|281601411|gb|ADA74395.1| Two component heavy metal response transcriptional regulator, winged helix family precursor [Shigella flexneri 2002017] gi|300297662|gb|EFJ54047.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1] gi|300304997|gb|EFJ59517.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1] gi|300410360|gb|EFJ93898.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1] gi|300454767|gb|EFK18260.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1] gi|305852368|gb|EFM52819.1| transcriptional regulatory protein YedW [Escherichia coli NC101] gi|307553979|gb|ADN46754.1| heavy metal response regulator [Escherichia coli ABU 83972] gi|312946560|gb|ADR27387.1| transcriptional regulatory protein YedW [Escherichia coli O83:H1 str. NRG 857C] gi|315286723|gb|EFU46148.1| transcriptional activator protein Irlr [Escherichia coli MS 110-3] gi|315290199|gb|EFU49579.1| transcriptional activator protein Irlr [Escherichia coli MS 153-1] gi|315296452|gb|EFU55752.1| transcriptional activator protein Irlr [Escherichia coli MS 16-3] gi|323956362|gb|EGB52105.1| heavy metal response regulator [Escherichia coli H263] gi|324005926|gb|EGB75145.1| transcriptional activator protein Irlr [Escherichia coli MS 57-2] gi|324013430|gb|EGB82649.1| transcriptional activator protein Irlr [Escherichia coli MS 60-1] gi|331043286|gb|EGI15424.1| transcriptional activator protein CopR [Escherichia coli M605] Length = 260 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 79 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 138 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +++ S + L R+E ++L L + Sbjct: 139 FSFSELLARVRAQLRQHHALNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLAS 198 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 199 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 254 >gi|19552100|ref|NP_600102.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|11526729|gb|AAG36759.1|AF119221_1 response regulator [Corynebacterium glutamicum] gi|21323640|dbj|BAB98267.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] Length = 232 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/211 (24%), Positives = 100/211 (47%), Gaps = 18/211 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGE 58 +++DD V+D +S G+N + E+ +Q+ +E + + ++ G Sbjct: 3 ILVVDDEQAVRDSL-----RRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGM 57 Query: 59 KVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ R +R+ P++ ++ ++ + D+G DD + KP E+LARV ++ R Sbjct: 58 DGLEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVR 117 Query: 118 RLKVSNNRAET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 R V +N++ + G + + + RD G L R E +L+ L+ N+ K + Sbjct: 118 RSAVESNQSSSIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLT 177 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 + QI ++G D N +E +I LR+K Sbjct: 178 RAQILEEVWG-CDFPTSGNALEVYIGYLRRK 207 >gi|46202620|ref|ZP_00052911.2| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 225 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 8/188 (4%) Query: 37 WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 +L +S R D I+ L G G +++ R A + P++ +S + + +G Sbjct: 38 FLATSERWDAMIIDRMLPGLDGLSIIQALRA--AGNTTPVLVLSALGKVDDRVRGLKAGG 95 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153 DD + KP E+LAR+ A+ RR+ + R + + + R G+ L RE Sbjct: 96 DDYLVKPYAFAELLARIEALSRRVSSTQPETRLKVEDLEMDLLARAVTRGGQEIDLQPRE 155 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 R+LEYLM + G+ V +T + ++ FD + N+++ HIS+LR+K+ + + Sbjct: 156 FRLLEYLMRHAGQVVTRTMLLENVWEYHFDP--QTNLIDVHISRLRQKVDKDFELPLIHT 213 Query: 213 KRFLGYSI 220 R GY++ Sbjct: 214 VRGAGYTL 221 >gi|326333582|ref|ZP_08199821.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium Broad-1] gi|325948598|gb|EGD40699.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium Broad-1] Length = 244 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 97/205 (47%), Gaps = 20/205 (9%) Query: 31 SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78 +L +E W ++A A+ A +++ + + L R+ + VP++ + Sbjct: 37 ALRYEGWEVAAAHTGTKAVSAARDFTPDAIVLDWMLPDFDGLEVLRRVRSTNPAVPVLFL 96 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS----NNRAETGPIRVF 134 + +++ + +G DD V KP E++AR+ A+ RR + ++ G + + Sbjct: 97 TAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRALMRRAGATRIEEHSVIHVGDLTMD 156 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D R+ GE L E +L +LM N + ++K QI ++ +D + NVVE +I Sbjct: 157 EDSREVRRAGEEISLTATEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 215 Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGY 218 S LRKK+ G +P + + R GY Sbjct: 216 SYLRKKI--DAGREPMIHTMRGAGY 238 >gi|293609579|ref|ZP_06691881.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828031|gb|EFF86394.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GEKVL R VP+I I+ S+ ++ D G +D + KP E+ AR+ A Sbjct: 59 GEKVLTTIR--HKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQL 116 Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+ +S T G +++ + + G+ L +E +IL LM + + + Q+ Sbjct: 117 RKQTLSQQSVLTWGDLQLDTQAKVVLSAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A+Y + E +E N +E I +LRK K+G + + R LGY + Sbjct: 177 ALYA-WGEEIESNAIEVFIYQLRK----KIGSSSIKTIRGLGYRM 216 >gi|289765639|ref|ZP_06525017.1| two-component system response regulator [Fusobacterium sp. D11] gi|289717194|gb|EFD81206.1| two-component system response regulator [Fusobacterium sp. D11] Length = 187 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 5/159 (3%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 DV ++ L K K EL + R + P+I I+ S+ ++ D G +D + KP Sbjct: 10 DVILLDLMLPKKSGK--ELCQEFRKLNNTPIIIITAKDSILDKVELLDLGANDYICKPFA 67 Query: 105 HREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LAR+ R + S ++ I++ + +Q E L + E ILEY M Sbjct: 68 MEELLARIRVATRNKENSVDKQFYLEKDIKLDLSAKRVYLQEEEVNLTKTEFLILEYFMK 127 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 N+G ++ +I ++G +D EE +V+ +I+ LRKK+ Sbjct: 128 NKGLSCSREKIIIGVWG-YDFDGEEKIVDVYINSLRKKI 165 >gi|258508221|ref|YP_003170972.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|257148148|emb|CAR87121.1| Two-component response regulator [Lactobacillus rhamnosus GG] Length = 224 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 11/158 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE VL IR SQVP++ ++ T+ G +D + KP E+LAR+ Sbjct: 59 GESVLT---TIRKTSQVPVLVLTAIQEKVKTVALLQQGANDYLTKPFDIDELLARIQVQL 115 Query: 117 RRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R++ +N++ + G I++ V + LP++E +L +M + + K+Q Sbjct: 116 RQVSGQPVTTNDQLKVGEIQLDPKRHVVTVNQQTLTLPKKEYDMLALMMRDPHQVFDKSQ 175 Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDP 209 ++ ++G F A +N + HIS LR K+ N+L DP Sbjct: 176 LYEHVWGEPFLNA--DNTLNVHISNLRTKI-NELAHDP 210 >gi|256854939|ref|ZP_05560300.1| response regulator [Enterococcus faecalis T8] gi|256709452|gb|EEU24499.1| response regulator [Enterococcus faecalis T8] gi|315030108|gb|EFT42040.1| putative regulatory protein VanR [Enterococcus faecalis TX4000] Length = 229 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 10/169 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R SQ+P+I ++ + + +G DD V KP + E++ARV +I RR + Sbjct: 61 MEVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSR 120 Query: 121 VSNNRA-----ETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173 + + E GP+ + D + + ++G+ L E IL YL+A+ RV + +I Sbjct: 121 MQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGIL-YLLASHPNRVFSADEI 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221 F ++ + V V H+S LR K+ G + V + +GY ID Sbjct: 180 FERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227 >gi|302521973|ref|ZP_07274315.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|318059392|ref|ZP_07978115.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079003|ref|ZP_07986335.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|302430868|gb|EFL02684.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 219 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 6/132 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD + KP + + ARV A+ RR E G +R+ + R + GE PL Sbjct: 91 LDTGADDYLTKPFSYVVLRARVKALLRRRATGAPPVRELGALRLDTGARRVRLAGEEIPL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +LE+L+ G+ V+K I ++ F + + N+VE ++S LR+ KLG Sbjct: 151 TAKEYAVLEHLVLRAGQVVSKADILEHVWD-FAYSGDPNIVEVYVSTLRR----KLGAGL 205 Query: 210 VDSKRFLGYSID 221 + + R GY ++ Sbjct: 206 IRTVRGAGYLLE 217 >gi|261337928|ref|ZP_05965812.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM 20093] gi|270277418|gb|EFA23272.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM 20093] Length = 243 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 20/143 (13%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI------RVFSDGRDPEVQGEVF 147 G DD V KP E++AR+ AI RR + + E PI + D D G+ Sbjct: 100 GGDDYVTKPFSLEEVVARIRAILRR---TREQVEDDPIIRVGDLEINEDSHDVTRAGKPI 156 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E ++L YLM N G+ ++K QI ++ +D + +VES+IS LRKK+ + Sbjct: 157 DLSPTEYKLLCYLMDNEGRVLSKAQILDHVWQ-YDWGGDAAIVESYISYLRKKVDDITVE 215 Query: 208 DP----------VDSKRFLGYSI 220 D +++KR +GY I Sbjct: 216 DEDGTTHKVQPLIETKRGIGYMI 238 >gi|150018981|ref|YP_001311235.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905446|gb|ABR36279.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 223 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 83/160 (51%), Gaps = 14/160 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +P+I ++ S + + G DD V KP + + +LAR+ A+ RR +N+ + Sbjct: 67 IRKEKNIPIIIVTSRDSEMDEIMSMNLGADDFVTKPYNTQILLARITAVLRRTLGNNSIS 126 Query: 127 ETGPIRVFSDGRDPEVQG-------EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E V +G V E L + E RIL LM N+ V++ + ++ Sbjct: 127 EI----VEHNGLKLNVSNGSVIFGDEKIDLTKNEFRILLCLMKNKECIVSREDLMDYLWN 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 D +++N + ++++LRKKL+ ++GF D +++KR +GY Sbjct: 183 -SDLYIDDNTLSVNVTRLRKKLQ-EIGFKDGIETKRGIGY 220 >gi|325122844|gb|ADY82367.1| two component transcriptional regulator, winged helix family [Acinetobacter calcoaceticus PHEA-2] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GEKVL R VP+I I+ S+ ++ D G +D + KP E+ AR+ A Sbjct: 59 GEKVLTTIR--HKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQL 116 Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+ +S T G +++ + + G+ L +E +IL LM + + + Q+ Sbjct: 117 RKQTLSQQSVLTWGDLQLDTQAKVVLSAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A+Y + E +E N +E I +LRK K+G + + R LGY + Sbjct: 177 ALYA-WGEEIESNAIEVFIYQLRK----KIGSSSIKTIRGLGYRM 216 >gi|324114941|gb|EGC08906.1| response regulator receiver domain-containing protein [Escherichia fergusonii B253] Length = 219 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDRLIGDGIKTGLIKMGFSVDWFTGGREGKEALYSAPYDAVILDLTLPGIDGRDI 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R + P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 LREWR--ENGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRAS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++N G + + R + GE PL +E +LE LM N G+ + + I +Y Sbjct: 121 GQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE HI LR+KL + GF + + +GY++ Sbjct: 180 TWDEEVTSNAVEVHIHHLRRKLGS--GF--IRTVHGIGYTL 216 >gi|304439115|ref|ZP_07399034.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372474|gb|EFM26061.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 217 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 18/166 (10%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + R S +P+I +S + + G DD + KP + A++ + ++ Sbjct: 58 LEIIKYTRQSSSIPIIVLSAIDLEAYIISAINLGADDYLTKPFSLGILEAKIKRAFEKIV 117 Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVF-------PLPRRERRILEYLMANRGKRVAKTQ 172 S+ + ++ DG D F L R E +IL YL+ N+ + + K Sbjct: 118 SSD-------LNLYKKDGLDFNFNENTFFVDNKNIDLTRTETKILYYLIKNKSQVITKEL 170 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +F ++G+ DE +++N + +IS++R KL+ +DP+++ +GY Sbjct: 171 LFDFVWGIDDEFIDQNTLSVNISRIRNKLK---PYDPIETVFGVGY 213 >gi|30063407|ref|NP_837578.1| transcriptional regulatory protein YedW [Shigella flexneri 2a str. 2457T] gi|56480011|ref|NP_707854.2| transcriptional regulatory protein YedW [Shigella flexneri 2a str. 301] gi|161486196|ref|NP_754279.2| transcriptional regulatory protein YedW [Escherichia coli CFT073] gi|30041659|gb|AAP17387.1| putative 2-component transcriptional regulator [Shigella flexneri 2a str. 2457T] gi|56383562|gb|AAN43561.2| putative 2-component transcriptional regulator [Shigella flexneri 2a str. 301] gi|222033705|emb|CAP76446.1| transcriptional regulatory protein yedW [Escherichia coli LF82] gi|313649593|gb|EFS14017.1| transcriptional activator protein irlR [Shigella flexneri 2a str. 2457T] gi|323186723|gb|EFZ72045.1| transcriptional activator protein irlR [Escherichia coli RN587/1] gi|332757540|gb|EGJ87875.1| transcriptional activator protein irlR [Shigella flexneri K-671] gi|333003072|gb|EGK22626.1| transcriptional activator protein irlR [Shigella flexneri VA-6] gi|333003228|gb|EGK22774.1| transcriptional activator protein irlR [Shigella flexneri K-218] gi|333004084|gb|EGK23618.1| transcriptional activator protein irlR [Shigella flexneri K-272] gi|333017619|gb|EGK36931.1| transcriptional activator protein irlR [Shigella flexneri K-304] Length = 223 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 3/159 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 N+ E +++ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 121 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 FD + N V+ I +LR K+ + + + R +GYS Sbjct: 181 FDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 >gi|309778806|ref|ZP_07673579.1| DNA-binding response regulator BaeS [Ralstonia sp. 5_7_47FAA] gi|308922514|gb|EFP68138.1| DNA-binding response regulator BaeS [Ralstonia sp. 5_7_47FAA] Length = 219 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 10/194 (5%) Query: 36 EWL----QSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88 EWL ++ R +A E L+ G+ LE+ R +RA S+VP++ ++ L Sbjct: 27 EWLADGTHATQRVRETAPELVLLDLMLPGKDGLEICREVRAFSEVPIVMVTARVEEIDRL 86 Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP 148 + G DD V KP RE++AR+ I RR++ E+ + + + ++G+ Sbjct: 87 LGLELGADDYVCKPFSPRELVARIKTILRRVQRGGGVPESA-LHIDAAAYAATLRGQRLD 145 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGF 207 L E R+L L G+ ++++ + IY V + V++HI LR+K+ G Sbjct: 146 LTPVEFRLLAALAGAPGRILSRSNLLEQIYD-DHRIVTDRTVDTHIKNLRRKMEQVSPGT 204 Query: 208 DPVDSKRFLGYSID 221 + + S +GY +D Sbjct: 205 EMIHSVYGVGYRLD 218 >gi|295106557|emb|CBL04100.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 231 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 9/164 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 EL R +R+ + VP++ +S + + + G DD + KP RE++ARV A+ RR Sbjct: 66 ELCRRLRSKTTVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGSG 125 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +N+ I + D + L RE +L LM N GK V++ + Sbjct: 126 GDFPGANHAITASGITLDEDAHTASGEHGEIDLTPREFELLASLMKNAGKVVSREDLLRD 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218 +G ++ E V++HI +LR K+ G+DP V++ R GY Sbjct: 186 AWG-WEYLTETKTVDTHIKRLRDKIEGA-GYDPGLVETVRGYGY 227 >gi|302876970|ref|YP_003845603.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307687661|ref|ZP_07630107.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302579827|gb|ADL53839.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 225 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 84/168 (50%), Gaps = 14/168 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL ++ RA S +P+I ++ + D G DD + KP +E+++R+ ++ RR Sbjct: 61 ELCKMARAKSDMPIIFLTACDDEVNVVMGLDMGADDYITKPFRIKELISRIKSVLRRCNK 120 Query: 122 SNNRA---ETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 NN E G I + + D + + E+ L E R+L N G+ ++++Q+ I Sbjct: 121 ENNLKNIFEIGDICINTLDAKVYKKNIEI-SLTALEYRLLLVFANNIGQVLSRSQLLEGI 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220 + + + V +N + +I ++R+KL + DP + + R +GY I Sbjct: 180 WDVAGDFVNDNTLTVYIKRIREKLED----DPQNPRIIKTVRGMGYRI 223 >gi|226947549|ref|YP_002802640.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226843600|gb|ACO86266.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 230 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 9/164 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S++P+I IS S + ++G DD + KP + I+A++ + RR Sbjct: 66 RRIRQKSKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYA 125 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 KV E ++ + + + E + E + ++E +LEYLM K V + + I+ Sbjct: 126 PKVDEKIVELQGLKFYKERSEIEFKDERVIITKKEGILLEYLMKKYPKVVNRDFLLEKIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 E VEEN + ++S++RK+L ++LG D +++ R +GY ++ Sbjct: 186 DDI-EFVEENTLNVNVSRIRKRL-HELGIEDGIETVRGVGYRLN 227 >gi|182679197|ref|YP_001833343.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635080|gb|ACB95854.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 227 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 12/156 (7%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128 + P++ +S + + SG DD + KP E+LARV A+ RR K ET Sbjct: 72 ETPVLILSALGQVDDRVKGLRSGGDDYLPKPYAFSELLARVEALARR-KPPGTAEETIYR 130 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 G + + G+ L RE R+LEYLM + G+ V +T + ++ FD + Sbjct: 131 IGGLELDRLAHKLTRDGKEIILQPREFRLLEYLMKHAGQVVTRTMLLEHVWDYHFDP--Q 188 Query: 187 ENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 NV++ HIS+LR K+ GFDP + + R +GY I Sbjct: 189 TNVIDVHISRLRSKIDK--GFDPPLLQTIRGIGYMI 222 >gi|167835609|ref|ZP_02462492.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43] Length = 220 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR- 118 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + R+E+ G + + + G L RE +LE L+A G ++K+Q+ Sbjct: 119 --QSGRSESLIRHGTLTLDPASHQVTLGGAPVALSAREFALLEALLARPGAVLSKSQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 177 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 216 >gi|167566116|ref|ZP_02359032.1| DNA-binding response regulator [Burkholderia oklahomensis EO147] Length = 219 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 6/151 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETG 129 S VP+I ++ + + ++G DD + KP E+ ARV+A+ RR + N + G Sbjct: 71 STVPVIILTALDQVANRIAGLNAGADDYLVKPFDLSELSARVSAVARRYSGNPNPLVKLG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + + + L E +LE L+ + G ++K+Q+ + +Y DE V N Sbjct: 131 ELAIDTAVHSVKRGDARVDLTASEWALLETLIQHPGMILSKSQLEARLYSFNDE-VGSNT 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E H+S+LRK KLG D +++ R LGY + Sbjct: 190 IEVHVSRLRK----KLGADMIETVRGLGYRL 216 >gi|332973098|gb|EGK11033.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 239 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 87/172 (50%), Gaps = 19/172 (11%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R+ + VP++ ++ + L G DD + KP + E++ARV A RR ++ Sbjct: 63 EVCRRLRSFTTVPILFLTARSNDLDKLMGLGIGGDDYITKPFNPLEVVARVKAQLRRQQL 122 Query: 122 SNN--RAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + R ET G R+ V+G P P RE ++L +L + + +K+Q++ Sbjct: 123 AGQQIREETRIHDWGRFRMDEGAGQLTVEGTAVPCPAREFQLLSFLCRHPNQIFSKSQLY 182 Query: 175 SAIYGLFDEAV-EENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSI 220 ++G +E++ E+N V H+ +LR+K+ DP + R LGY + Sbjct: 183 EQVWG--EESLGEDNTVMVHVRRLREKIEP----DPAKPRYLVTVRGLGYKL 228 >gi|260576068|ref|ZP_05844062.1| two component transcriptional regulator, winged helix family [Rhodobacter sp. SW2] gi|259021767|gb|EEW25069.1| two component transcriptional regulator, winged helix family [Rhodobacter sp. SW2] Length = 225 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 6/164 (3%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L R +RA + P++ ++ + ++ ++G DD + KP E++ARV A+ RR Sbjct: 60 LSLVRALRAAGRKTPVLFLTALGGIDDRVEGLEAGGDDYLTKPFAFAELMARVNALARRP 119 Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V + + + R+ G+ L +E +LE LM N G+ V +T + + Sbjct: 120 PVQEVKTLLRVADLELDLMRREARRAGQQIDLLPKEFTLLEVLMRNEGRVVTRTMLLERV 179 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + FD + +VVE+HIS+LR K+ + + + +GYSI Sbjct: 180 WDFHFDP--KTSVVETHISRLRAKIDRPFAVALLHTVKNMGYSI 221 >gi|120598570|ref|YP_963144.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|146293351|ref|YP_001183775.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|120558663|gb|ABM24590.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] gi|145565041|gb|ABP75976.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] gi|319426651|gb|ADV54725.1| two component transcriptional regulator, PhoP [Shewanella putrefaciens 200] Length = 224 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 78/154 (50%), Gaps = 3/154 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127 A + P++ ++ + Q ++ ++G DD + KP E++AR+ A+ RR Sbjct: 69 AELKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPVIT 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 +G +++ + + EV + E ILEYLM + + VAK ++ IYG D+ + Sbjct: 129 SGELKLDLAAKQVTLANEVMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDP 186 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 N +E +S+LRKKL +P+ + R GY + Sbjct: 187 NTIEVMVSRLRKKLTRDGIDNPIVTIRGQGYKFN 220 >gi|261410066|ref|YP_003246307.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286529|gb|ACX68500.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 247 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 104/216 (48%), Gaps = 28/216 (12%) Query: 29 FNSLEFEEWLQSSAREDVSAIEAFLIGK-----------GEKVLELPRIIRAHS-QVPLI 76 FN LE E + A + +SA+E L + G+ +++ R +RA + Q+P+I Sbjct: 24 FN-LEKEGYEVICAFDGISAVEIALTQRPDLMLLDLMLPGKDGMDVCREVRAANLQIPII 82 Query: 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TG------ 129 ++ + + G DD V KP REILARV A RR + +N A+ TG Sbjct: 83 MLTAKDGEIDKVLGLELGADDYVTKPFSTREILARVKAHLRRQQKPDNSADNTGGTSAGG 142 Query: 130 -PIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 +R+F D ++ GE L RE ++ YL N GK + + + A++G F+ Sbjct: 143 QGLRLFELFIDTDMYMVYKSGEALDLTHREYELVYYLARNAGKVMTREHLLQAVWG-FEY 201 Query: 184 AVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218 + V+ I +LR+K+ N + + ++R LGY Sbjct: 202 FGDVRTVDVTIRRLREKIEENPSKPEYILTRRGLGY 237 >gi|290962001|ref|YP_003493183.1| two component positive transcriptional regulator PhoP [Streptomyces scabiei 87.22] gi|260651527|emb|CBG74650.1| putative POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Streptomyces scabiei 87.22] Length = 242 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 9/133 (6%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVF 147 +G DD V KP E+ AR+ A+ RR + + E+ +RV DP G Sbjct: 109 AGGDDYVTKPFGLDEVAARIGAVLRRTRRPEH--ESSVLRVADLELDPATHSVRRGGTAI 166 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E R+L YLM + G+ V + Q+ ++ +D ++ VV ++IS LR+KL + LG Sbjct: 167 GLSPTEFRLLRYLMLHSGRIVPRAQLLEHVWS-YDFNGDDTVVATYISYLRRKL-DALGP 224 Query: 208 DPVDSKRFLGYSI 220 + ++R +GY+I Sbjct: 225 PLIHTQRGIGYAI 237 >gi|259649537|dbj|BAI41699.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 227 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 11/158 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE VL IR SQVP++ ++ T+ G +D + KP E+LAR+ Sbjct: 62 GESVL---TTIRKTSQVPVLVLTAIQEKVKTVALLQQGANDYLTKPFDIDELLARIQVQL 118 Query: 117 RRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R++ +N++ + G I++ V + LP++E +L +M + + K+Q Sbjct: 119 RQVSGQPVTTNDQLKVGEIQLDPKRHVVTVNQQTLTLPKKEYDMLALMMRDPHQVFDKSQ 178 Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDP 209 ++ ++G F A +N + HIS LR K+ N+L DP Sbjct: 179 LYEHVWGEPFLNA--DNTLNVHISNLRTKI-NELAHDP 213 >gi|296136300|ref|YP_003643542.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295796422|gb|ADG31212.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 225 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 12/140 (8%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------V 121 ++ S +P++ ++ +L+ + D G DD + KP E+LAR+ A+ RR + Sbjct: 68 QSGSNLPILILTARDALEDRVRGLDLGADDYLVKPFESAELLARIRAVARRQGGQAQPVL 127 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 SN E P+ R+ QG+ L RE +L L+ G ++++++ IYG + Sbjct: 128 SNGVLELDPV-----SREVRFQGQTQRLTAREYALLHALLLRPGAILSRSELEDRIYG-W 181 Query: 182 DEAVEENVVESHISKLRKKL 201 +E VE N VE I LRKKL Sbjct: 182 NEEVESNAVEFLIHSLRKKL 201 >gi|255527221|ref|ZP_05394104.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255509085|gb|EET85442.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 224 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 8/160 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I IS + + G DD + KP +L +V A+ RR N Sbjct: 67 IRMLSKVPIIFISSRTEEMDIIIATNMGGDDYLTKPFSINILLTKVNALLRRTYAYFNDL 126 Query: 127 ETGPIR---VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 E+ I + + +D + G+ L R E +IL LM N+G V++ +I +++ Sbjct: 127 ESDVITHKGLILNLKDDTIMYNGKSLQLTRNEFKILHILMKNKGSIVSRDRIIRSLWQ-- 184 Query: 182 DEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE+ V++N + +I++LRKKL++ + + +++ +GY + Sbjct: 185 DESFVDDNTLTVNITRLRKKLKDIGLENYIQTQKSMGYIV 224 >gi|116054192|ref|YP_788636.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa UCBPP-PA14] gi|115589413|gb|ABJ15428.1| two-component response regulator CreB [Pseudomonas aeruginosa UCBPP-PA14] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122 +R S+VP+I ++ + + + G DD V KP RE+ ARV AI +R+ Sbjct: 67 LRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAPRPAAL 126 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 A +GP +V + + L R E R+L+ L+ + ++ Q+ A+ G+ Sbjct: 127 EEAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL-GVAS 185 Query: 183 EAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYS 219 EA E ++SHI LR KLR N+ G + + + R LGYS Sbjct: 186 EAGYERNIDSHIKSLRAKLRQVNERG-EAIQTHRGLGYS 223 >gi|260554524|ref|ZP_05826745.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|260411066|gb|EEX04363.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] Length = 228 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 4/158 (2%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123 +++R S++P+I ++ + + + G DD + KP + E+LAR+ ++ RR + + Sbjct: 69 QVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQYLQE 128 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182 N +++ G G + L + E +L YL+ N+ + V + QI S ++ + FD Sbjct: 129 NELSISDLKMDMVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNINFD 188 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N ++ + +LR K+ + + R LGY I Sbjct: 189 --TDTNFIDVAVRRLRSKIDEGYELKLIHTIRGLGYKI 224 >gi|269798762|ref|YP_003312662.1| transcriptional regulator [Veillonella parvula DSM 2008] gi|269095391|gb|ACZ25382.1| two component transcriptional regulator, winged helix family [Veillonella parvula DSM 2008] Length = 224 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 2/149 (1%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129 + P++ ++ SLQ + ++G DD + KP E+ AR+ A+ RR + + N G Sbjct: 71 NTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNARHAQNDIHVG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P+ + R + GE L +E +L YL +N +++ QI ++ +D N+ Sbjct: 131 PLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE-YDYESYSNL 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ +I LRKK+ + + R +GY Sbjct: 190 IDVYIKNLRKKIDTDENVKLIQTVRGVGY 218 >gi|182679117|ref|YP_001833263.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635000|gb|ACB95774.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 218 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L I R++S++ ++ ++ + + + G DD + KP E++AR+ A+YRR V Sbjct: 63 LKAIRRSNSKMAILVMTAHDQISDRIAGLSEGADDYIVKPFDLDELIARIDAVYRRYAPV 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + I + G+ G L +E ILE L G ++K +I A+YG F Sbjct: 123 AEEGIKINDIHLDLHGQRLTKSGVDVELTAKEWAILELLARRPGMIISKERIEEALYG-F 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E +E N +E +S++RK K+G + + + R GY + Sbjct: 182 GEEIESNAIEVFVSRIRK----KVGRNIIRTVRGRGYCL 216 >gi|197121352|ref|YP_002133303.1| transcriptional regulator [Anaeromyxobacter sp. K] gi|196171201|gb|ACG72174.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. K] Length = 231 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 9/208 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 + ++++D A V+ A G +E ++ E L DV ++ L G G Sbjct: 7 LVLVVEDEAPVRRFLRAALAAHGYRIEEAGTVAEAEQLAPGHNPDVFLLDLGLPDGDG-- 64 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 ++L R +R ++ P+I +S + + D+G DD + KP E+LAR+ R Sbjct: 65 -IDLARRLREWTRAPIIVLSARGREEDKVTALDAGADDYLTKPFGVNELLARLRVALRHA 123 Query: 120 KVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + E GP+R+ R+ G L E R+L L N GK + QI Sbjct: 124 QAPPDGPPVVEVGPLRIDLARREITRSGAEVRLTPTEYRVLAMLARNAGKVLTHRQILRE 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204 ++G A E + V +++LRKKL ++ Sbjct: 184 VWG--PNATEAHYVRVQVAELRKKLEDE 209 >gi|26987916|ref|NP_743341.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24982625|gb|AAN66805.1|AE016309_7 DNA-binding response regulator [Pseudomonas putida KT2440] Length = 232 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 86/164 (52%), Gaps = 8/164 (4%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE L + R +R+ Q P++ ++ + D G DD V KP+ R +LAR+ Sbjct: 57 LMLPGEDGLSICRRVRSQYQGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARI 116 Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 A+ RR + +++ + G +R+ + R+ + ++ L E +L L +N G+ + Sbjct: 117 QALLRRSETVDSKRQDLAFGALRIDNRLREARLGEQLIELTGAEFDLLWLLASNAGRVLT 176 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 + QIF+A+ G+ + ++ ++ ISK+R K+G DP+ + Sbjct: 177 REQIFTALRGVGYDG-QDRSIDIRISKIRP----KIGDDPLQPR 215 >gi|172058213|ref|YP_001814673.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990734|gb|ACB61656.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 235 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 9/139 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-------KVSNNRAETGPIRVFSDGRDPEVQ 143 + G DD + KP RE++ARV AI RR+ +V++ G +++ D + Sbjct: 93 LELGADDYLTKPFSPREVVARVKAILRRMNQQTVAEEVTDGTILIGDVKIVPDNYEAFKA 152 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR- 202 E L +E +L YL N+G+ + + Q+ SAI+ +D + +V+ HIS +R+K+ Sbjct: 153 EERLELTPKEFELLVYLAKNKGRVLTRDQLLSAIWN-YDFVGDTRIVDVHISHVREKIEP 211 Query: 203 NKLGFDPVDSKRFLGYSID 221 N + + R LGY ++ Sbjct: 212 NTKKPIYIKTIRGLGYKME 230 >gi|332981484|ref|YP_004462925.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699162|gb|AEE96103.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 22/212 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G DG + + + EE L + E I ++ L Sbjct: 5 ILIIDDERIMVKGLKFSLEQDGYETDA--AYDGEEGLNKALNEHYDLIILDIMLPKINGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ + + G DD + KP + E+ ARV AI+RRL + Sbjct: 63 EVCRQVREQSSVPIIMLTAKGDDMDKILGLEYGADDYLAKPFNILELKARVKAIFRRLDL 122 Query: 122 SNNRAETGPIR------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 ++ + ++ V DGRD + + F L LE L+ RGK + Sbjct: 123 ASPKKNDKYLKIKNLTINFENRTVLVDGRDANLTAKEFDL-------LEVLVNGRGKIFS 175 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ ++ +D + V+ HI +LR+KL Sbjct: 176 REQLLETVWK-YDYLGDLRTVDVHIRRLREKL 206 >gi|329925042|ref|ZP_08279986.1| transcriptional regulatory protein WalR [Paenibacillus sp. HGF5] gi|328940161|gb|EGG36493.1| transcriptional regulatory protein WalR [Paenibacillus sp. HGF5] Length = 243 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 104/216 (48%), Gaps = 28/216 (12%) Query: 29 FNSLEFEEWLQSSAREDVSAIEAFLIGK-----------GEKVLELPRIIRAHS-QVPLI 76 FN LE E + A + +SA+E L + G+ +++ R +RA + Q+P+I Sbjct: 20 FN-LEKEGYEVICAFDGISAVEIALTQRPDLMLLDLMLPGKDGMDVCREVRAANLQIPII 78 Query: 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TG------ 129 ++ + + G DD V KP REILARV A RR + +N A+ TG Sbjct: 79 MLTAKDGEIDKVLGLELGADDYVTKPFSTREILARVKAHLRRQQKPDNSADNTGGTSAGG 138 Query: 130 -PIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 +R+F D ++ GE L RE ++ YL N GK + + + A++G F+ Sbjct: 139 QGLRLFELFIDTDMYMVYKSGEALDLTHREYELVYYLARNAGKVMTREHLLQAVWG-FEY 197 Query: 184 AVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218 + V+ I +LR+K+ N + + ++R LGY Sbjct: 198 FGDVRTVDVTIRRLREKIEENPSKPEYILTRRGLGY 233 >gi|325498579|gb|EGC96438.1| DNA-binding transcriptional regulator QseB [Escherichia fergusonii ECD227] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 13 ILLIEDDRLIGDGIKTGLIKMGFSVDWFTGGREGKEALYSAPYDAVILDLTLPGIDGRDI 72 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R + P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 73 LREWR--ENGKREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALIRRAS 130 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++N G + + R + GE PL +E +LE LM N G+ + + I +Y Sbjct: 131 GQASNELHHGKVILDPGKRVATLAGEPLPLKPKEFALLELLMRNVGRVLPRKLIEEKLY- 189 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE HI LR+KL + GF + + +GY++ Sbjct: 190 TWDEEVTSNAVEVHIHHLRRKLGS--GF--IRTVHGIGYTL 226 >gi|307944203|ref|ZP_07659544.1| protein PetR [Roseibium sp. TrichSKD4] gi|307772549|gb|EFO31769.1| protein PetR [Roseibium sp. TrichSKD4] Length = 232 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 16/226 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD ++D L ++G + + + S D+ ++ + GE L Sbjct: 13 LLLVDDDQRIRDLLGRLLAENGYRVTTAANAQEARTCLSGLSFDLLILDVMM--PGETGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119 +L +R HS VP++ ++ + + G DD + KP +E+L R++AI RR Sbjct: 71 DLASWLRDHSDVPILMLTARSDASDRIAGLEVGADDYLAKPFEPKELLLRLSAILRRGGP 130 Query: 120 KVSNNRAET--GPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +V++ E GP VF+ GR G+ L RE++IL G V + +I Sbjct: 131 RVTHVATEIKFGPF-VFNPGRGELKNGDAPIRLTDREKQILSIFAEQPGATVPRHKIVGD 189 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGYSI 220 D + E V+ I++LR+K+ + G +PV + R +GY + Sbjct: 190 -----DSGLGERTVDVQINRLRRKIEDDPG-NPVYLQTVRGIGYRL 229 >gi|227877766|ref|ZP_03995799.1| two-component system regulator [Lactobacillus crispatus JV-V01] gi|256843617|ref|ZP_05549105.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256850093|ref|ZP_05555523.1| two-component system regulator [Lactobacillus crispatus MV-1A-US] gi|262047381|ref|ZP_06020338.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|293380726|ref|ZP_06626774.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|312984347|ref|ZP_07791689.1| DNA-binding response regulator CsrR [Lactobacillus crispatus CTV-05] gi|227862625|gb|EEJ70111.1| two-component system regulator [Lactobacillus crispatus JV-V01] gi|256615037|gb|EEU20238.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256713065|gb|EEU28056.1| two-component system regulator [Lactobacillus crispatus MV-1A-US] gi|260572355|gb|EEX28918.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|290922690|gb|EFD99644.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|310894272|gb|EFQ43352.1| DNA-binding response regulator CsrR [Lactobacillus crispatus CTV-05] Length = 238 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 12/175 (6%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L+ + +D AI L+ LE+ R +R P+I ++ S+ + D G DD Sbjct: 38 LEDALSQDFDAILLDLMLPDLNGLEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPIRVFSDGRDPEVQ----------GEV 146 + KP E+LAR+ A+ RR+K+ + ++ T + +D ++ G+ Sbjct: 98 YIVKPFAIEELLARLRAVLRRVKIEKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKA 157 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L +RE +L L+ N+ V++ Q+ + I+G + +E NVVE ++ LR K+ Sbjct: 158 IDLTKREYNLLMTLIENKNNVVSRDQLLNKIWG-PESNIETNVVEVYVRYLRNKI 211 >gi|107099448|ref|ZP_01363366.1| hypothetical protein PaerPA_01000460 [Pseudomonas aeruginosa PACS2] gi|218889203|ref|YP_002438067.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa LESB58] gi|296386961|ref|ZP_06876460.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa PAb1] gi|313111910|ref|ZP_07797700.1| two-component response regulator CreB [Pseudomonas aeruginosa 39016] gi|218769426|emb|CAW25186.1| two-component response regulator CreB [Pseudomonas aeruginosa LESB58] gi|310884202|gb|EFQ42796.1| two-component response regulator CreB [Pseudomonas aeruginosa 39016] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122 +R S+VP+I ++ + + + G DD V KP RE+ ARV AI +R+ Sbjct: 67 LRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAPRPAAL 126 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 A +GP +V + + L R E R+L+ L+ + ++ Q+ A+ G+ Sbjct: 127 EGAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL-GVAS 185 Query: 183 EAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYS 219 EA E ++SHI LR KLR N+ G + + + R LGYS Sbjct: 186 EAGYERNIDSHIKSLRAKLRQVNERG-EAIQTHRGLGYS 223 >gi|238788139|ref|ZP_04631934.1| Transcriptional regulatory protein baeR [Yersinia frederiksenii ATCC 33641] gi|238723726|gb|EEQ15371.1| Transcriptional regulatory protein baeR [Yersinia frederiksenii ATCC 33641] Length = 239 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 2/158 (1%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G + + R IR S VP++ ++ L + G DD + KP RE++ARV Sbjct: 63 LMLPGTDGISICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARV 122 Query: 113 AAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 I RR + + ++T P+ + QG + L E R+L+ L G ++ Sbjct: 123 KTILRRCQQQREQPSDTAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 Q+ + +Y + V + ++SHI LR+KL G P Sbjct: 183 QLLNNLYDDY-RVVTDRTIDSHIKNLRRKLEALDGKKP 219 >gi|83311994|ref|YP_422258.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82946835|dbj|BAE51699.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 225 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 8/188 (4%) Query: 37 WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 +L +S R D I+ L G G +++ R A + P++ +S + + +G Sbjct: 38 FLATSERWDAMIIDRMLPGLDGLAIIQALRA--AGNTTPVLVLSALGKVDDRVRGLKAGG 95 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153 DD + KP E+LAR+ A+ RR+ + R + + + R G+ L RE Sbjct: 96 DDYLVKPYAFAELLARIEALSRRVSSTQPETRLKVEDLEMDLLARTVTRGGQEIDLQPRE 155 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 R+LEYLM + G+ V +T + ++ FD + N+++ HIS+LR+K+ + + Sbjct: 156 FRLLEYLMRHGGQVVTRTMLLENVWEYHFDP--QTNLIDVHISRLRQKVDKDFELPLIHT 213 Query: 213 KRFLGYSI 220 R GY++ Sbjct: 214 VRGAGYTL 221 >gi|152964988|ref|YP_001360772.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151359505|gb|ABS02508.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 226 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 5/139 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP++ ++ S +D D+G DD V KP +LAR+ A RR +V+ Sbjct: 67 IRGWSRVPIVVLTARTSSADAVDALDAGADDYVTKPFAMDVLLARLRAAVRRGEVAGTGP 126 Query: 127 ----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 E G +R+ R GE L E +L+ L+ N G+ V +T++ ++G Sbjct: 127 GEVLEVGDLRIDLARRAVTRGGEPVKLTPTEWHLLQVLVTNAGRLVTQTRLLQEVWG-PA 185 Query: 183 EAVEENVVESHISKLRKKL 201 E N + ++ +LR+KL Sbjct: 186 YGRETNYLRVYVGQLRRKL 204 >gi|239501396|ref|ZP_04660706.1| Transcriptional activator protein irlR [Acinetobacter baumannii AB900] Length = 223 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 4/158 (2%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123 +++R S++P+I ++ + + + G DD + KP + E+LAR+ ++ RR + + Sbjct: 64 QVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQYLQE 123 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182 N +++ G G + L + E +L YL+ N+ + V + QI S ++ + FD Sbjct: 124 NELSISDLKMDMVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNINFD 183 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N ++ + +LR K+ + + R LGY I Sbjct: 184 --TDTNFIDVAVRRLRSKIDEGYELKLIHTIRGLGYKI 219 >gi|163761277|ref|ZP_02168352.1| phosphate regulon, two-component response regulator protein [Hoeflea phototrophica DFL-43] gi|162281434|gb|EDQ31730.1| phosphate regulon, two-component response regulator protein [Hoeflea phototrophica DFL-43] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 84/173 (48%), Gaps = 20/173 (11%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +RA + +P+I ++ + +G DD V KP E+LARV A+ R Sbjct: 64 IELCRRLRARPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELLARVRAMLR 123 Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R LKV + + RV RD ++ F R+LE+LM++ G+ Sbjct: 124 RASPEVISSLLKVGDIELDRETHRVRRRARDIKLGPTEF-------RLLEFLMSSPGRVY 176 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ ++G D V+E V+ H+ +LRK + D + + R GYSI+ Sbjct: 177 SRAQLLDGVWG-HDVYVDERTVDVHVGRLRKAVNLSGMRDIIRTVRGAGYSIE 228 >gi|159900447|ref|YP_001546694.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893486|gb|ABX06566.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 226 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 3/130 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFP 148 DSG DD ++KP E+LARV A+ RR +S+ +G I + + Sbjct: 91 LDSGADDYLSKPFAFEELLARVRALGRRFNSNLSSEELRSGEIVLDLRAHTARRANQQLD 150 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L E +LE L+ N + +++ Q+ ++ ++ V+ ++V+ +IS LR+KL D Sbjct: 151 LTATEWNLLECLIRNSNQALSRQQLLDYVWS-YERDVQPSMVDVYISYLRRKLEQPTKRD 209 Query: 209 PVDSKRFLGY 218 P+ + R +GY Sbjct: 210 PIQTVRGVGY 219 >gi|160872789|ref|ZP_02062921.1| DNA-binding response regulator [Rickettsiella grylli] gi|159121588|gb|EDP46926.1| DNA-binding response regulator [Rickettsiella grylli] Length = 224 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 13/149 (8%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-REILARVAAIYRR 118 L + R +RA P++ ++ S++ + DSG DD +K E+ AR+ A+ RR Sbjct: 60 LSVLREVRAAGITTPILILTARQSVEDRVKGLDSGADDYYSKYYFDLDELSARIRALQRR 119 Query: 119 LKVSNNRAETGPIRVFSDGR-DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 SNNRA P+ + D +P ++G+V L RRE +L+ L+ N G V++ Sbjct: 120 --SSNNRAS--PLLTYRDIELNPSAFTVTLKGQVVNLSRREFSLLQKLLENAGHVVSRDS 175 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + +YG +++ ++ N +E H+ LRKKL Sbjct: 176 LNQCLYG-WEDDIDSNTLEVHVHNLRKKL 203 >gi|30248361|ref|NP_840431.1| response regulator [Nitrosomonas europaea ATCC 19718] gi|30138247|emb|CAD84255.1| possible Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding [Nitrosomonas europaea ATCC 19718] Length = 223 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 78/150 (52%), Gaps = 4/150 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 +P++ ++ S++ T+ D G DD + KP E++AR+ A+ RR +++ + + Sbjct: 73 LPVLVLTARGSMEDTIAGLDIGADDYMTKPFRLPELIARIRALIRRAHSITSTELQHDRL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + + + L RRE ILE L+ + V+K ++ + G +D+ + N +E Sbjct: 133 VLNTGSYTATLNDQPLLLTRREWTILETLLMASPRVVSKDKLLQNLTG-WDKNITPNAIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 H+S+LR K+ G + + R +GY ID Sbjct: 192 VHVSRLRAKIAP--GGIEIRTVRGIGYRID 219 >gi|330961382|gb|EGH61642.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 24/213 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 +++DD A +++ IA+ + + G++ +E E Q+ A + D+ ++ L Sbjct: 6 ILIVDDEAPIRE-MIAV----ALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWML--P 58 Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ +P+I ++ + + G DD + KP RE++AR+ Sbjct: 59 GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR ++ A PI V DP + G+ + E R+L++ M ++ + Sbjct: 119 AVLRRAGPTDGEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ ++G + VEE V+ HI +LRK L Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207 >gi|329926464|ref|ZP_08280878.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328939199|gb|EGG35561.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 232 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 10/150 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +EL + IR S+VP++ IS S G DD ++KP E+ ARV A RR Sbjct: 62 MELLKHIRETSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRAT 121 Query: 121 V---SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + ++ P+ F D +V+G+ PL +E IL+ L+ N + K Sbjct: 122 LYAETESKPAEPPVIAFKDLVLDLHSFSVKVKGKSVPLTAKEFHILKLLLTNHSRVFTKE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 QI+ I+ D ENV+ HI +LR+K+ Sbjct: 182 QIYQLIWE-EDYYGNENVINVHIRRLREKI 210 >gi|289422465|ref|ZP_06424308.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L] gi|289157037|gb|EFD05659.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L] Length = 235 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 10/171 (5%) Query: 40 SSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 S +E++ I L G EL I+ VP+I +S + + D+G +D + Sbjct: 45 QSRKEEIDIIIMDLFLPGIDGYELLPQIKDILDVPVIVVSAISDIVDKVKLLDAGANDYI 104 Query: 100 NKPIHHREILARVAAIYRRLKVS--NNRAETGP-------IRVFSDGRDPEVQGEVFPLP 150 KP ++E+LAR+ R +VS +N+AE + +F + D V G+ L Sbjct: 105 TKPFDNKELLARIGVQARISQVSKLDNKAENMENVLRYRDLELFPETFDVFVCGKELILT 164 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + E +ILE + N+ + +K I+ I+G ++ + HIS +RKK+ Sbjct: 165 KYEFKILELFLKNQKRIFSKQDIYEIIWGEIYTG-DDRTISVHISNIRKKI 214 >gi|228933518|ref|ZP_04096369.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826116|gb|EEM71898.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 227 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 17/205 (8%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQV-PLIGIS 79 LEFE + A+ A+E F G + +L E+ R IR + V P+I ++ Sbjct: 22 LEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNISGLEVLRRIRLKNAVIPIILLT 81 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFS 135 S+ + D G D + KP E+LAR+ A R V N+ + + + Sbjct: 82 ARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNVVKEEENSSYQIADLYLDE 141 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 R+ + + L RE +L +LM + + + + QI + ++G FD + NVV+ +I Sbjct: 142 KTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTNVWG-FDYYGDTNVVDVYIR 200 Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220 LRKK+ + V + R +GY + Sbjct: 201 YLRKKVDCNVDVPLVHTVRGVGYVL 225 >gi|255036502|ref|YP_003087123.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254949258|gb|ACT93958.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 228 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 10/169 (5%) Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 KG V + R+ + +P+I ++ + ++ ++ +SG DD + KP RE+LAR+ A Sbjct: 59 KGYDVCQQLRVYK--PSLPIIMLTAFGEIEDKVEGLNSGADDYIVKPFDFRELLARIYAA 116 Query: 116 YRRLKVSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R + + +R+ + G+V L +E +LEY + +RG+ V+K Sbjct: 117 LRVSDLMHPETSDKILRIADLEMNLGTKQVRRAGQVIDLTAKEFALLEYFLLHRGRVVSK 176 Query: 171 TQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + ++ L FD NVVE +I+ LRKK+ + ++ +GY Sbjct: 177 MDLAEHVWHLNFDPGT--NVVEVYINYLRKKVDKDFPTKLIHTRPGMGY 223 >gi|168186973|ref|ZP_02621608.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] gi|169295067|gb|EDS77200.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] Length = 227 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/227 (22%), Positives = 99/227 (43%), Gaps = 19/227 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-----KG 57 ++++D + D ++ DG ++G +L S A+E + L+ Sbjct: 6 LVVEDEISINDILVSALRSDGYIVKGV-------FLASEAKEALGLFNPDLVLLDINLPD 58 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E +L R I +P+I ++ + + + G DD + KP H +E+L RV R Sbjct: 59 ENGFDLCRYINKKCIIPIIMLTARNDIVDKVLGLELGADDYITKPFHIKEVLTRVKVAMR 118 Query: 118 RLKVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R+ + +E +++ +GR + L +E +LE+ + NR K + Sbjct: 119 RVNKYKDSSEESFIDINNSVKINLEGRIVLKNNKEVKLKPKEYELLEFFVKNRNKVFCRE 178 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ ++ FD E V+ H+ +LR KL +K +D+ +GY Sbjct: 179 ELLDKVWE-FDYDGEIRTVDVHVRRLRSKLNDKHEASIIDTVFGVGY 224 >gi|29377731|ref|NP_816885.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|227518155|ref|ZP_03948204.1| response regulator [Enterococcus faecalis TX0104] gi|227555640|ref|ZP_03985687.1| response regulator [Enterococcus faecalis HH22] gi|229547174|ref|ZP_04435899.1| response regulator protein [Enterococcus faecalis TX1322] gi|229550744|ref|ZP_04439469.1| response regulator [Enterococcus faecalis ATCC 29200] gi|255971507|ref|ZP_05422093.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255974457|ref|ZP_05425043.1| DNA-binding response regulator [Enterococcus faecalis T2] gi|256618570|ref|ZP_05475416.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200] gi|256761812|ref|ZP_05502392.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256957058|ref|ZP_05561229.1| DNA-binding response regulator [Enterococcus faecalis DS5] gi|256960922|ref|ZP_05565093.1| DNA-binding response regulator [Enterococcus faecalis Merz96] gi|256963940|ref|ZP_05568111.1| DNA-binding response regulator [Enterococcus faecalis HIP11704] gi|257078735|ref|ZP_05573096.1| DNA-binding response regulator [Enterococcus faecalis JH1] gi|257081305|ref|ZP_05575666.1| DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|257083963|ref|ZP_05578324.1| DNA-binding response regulator [Enterococcus faecalis Fly1] gi|257087793|ref|ZP_05582154.1| DNA-binding response regulator [Enterococcus faecalis D6] gi|257088438|ref|ZP_05582799.1| two component system response regulator [Enterococcus faecalis CH188] gi|257417380|ref|ZP_05594374.1| DNA-binding response regulator [Enterococcus faecalis AR01/DG] gi|257418883|ref|ZP_05595877.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257421302|ref|ZP_05598292.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|293384817|ref|ZP_06630662.1| regulatory protein VanR [Enterococcus faecalis R712] gi|293388239|ref|ZP_06632758.1| regulatory protein VanR [Enterococcus faecalis S613] gi|294781206|ref|ZP_06746553.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1] gi|300861487|ref|ZP_07107571.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|307268869|ref|ZP_07550234.1| putative regulatory protein VanR [Enterococcus faecalis TX4248] gi|307273944|ref|ZP_07555154.1| putative regulatory protein VanR [Enterococcus faecalis TX0855] gi|307283993|ref|ZP_07564163.1| putative regulatory protein VanR [Enterococcus faecalis TX0860] gi|307286511|ref|ZP_07566610.1| putative regulatory protein VanR [Enterococcus faecalis TX0109] gi|307289984|ref|ZP_07569910.1| putative regulatory protein VanR [Enterococcus faecalis TX0411] gi|312901344|ref|ZP_07760625.1| putative regulatory protein VanR [Enterococcus faecalis TX0470] gi|312902991|ref|ZP_07762180.1| putative regulatory protein VanR [Enterococcus faecalis TX0635] gi|312908859|ref|ZP_07767798.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|312952977|ref|ZP_07771833.1| putative regulatory protein VanR [Enterococcus faecalis TX0102] gi|312979498|ref|ZP_07791180.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|29345199|gb|AAO82955.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|44934164|gb|AAS49401.1| response regulator [Enterococcus faecalis] gi|227074398|gb|EEI12361.1| response regulator [Enterococcus faecalis TX0104] gi|227175217|gb|EEI56189.1| response regulator [Enterococcus faecalis HH22] gi|229304177|gb|EEN70173.1| response regulator [Enterococcus faecalis ATCC 29200] gi|229307756|gb|EEN73743.1| response regulator protein [Enterococcus faecalis TX1322] gi|255962525|gb|EET95001.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255967329|gb|EET97951.1| DNA-binding response regulator [Enterococcus faecalis T2] gi|256598097|gb|EEU17273.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200] gi|256683063|gb|EEU22758.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256947554|gb|EEU64186.1| DNA-binding response regulator [Enterococcus faecalis DS5] gi|256951418|gb|EEU68050.1| DNA-binding response regulator [Enterococcus faecalis Merz96] gi|256954436|gb|EEU71068.1| DNA-binding response regulator [Enterococcus faecalis HIP11704] gi|256986765|gb|EEU74067.1| DNA-binding response regulator [Enterococcus faecalis JH1] gi|256989335|gb|EEU76637.1| DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|256991993|gb|EEU79295.1| DNA-binding response regulator [Enterococcus faecalis Fly1] gi|256995823|gb|EEU83125.1| DNA-binding response regulator [Enterococcus faecalis D6] gi|256997250|gb|EEU83770.1| two component system response regulator [Enterococcus faecalis CH188] gi|257159208|gb|EEU89168.1| DNA-binding response regulator [Enterococcus faecalis ARO1/DG] gi|257160711|gb|EEU90671.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257163126|gb|EEU93086.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|291077899|gb|EFE15263.1| regulatory protein VanR [Enterococcus faecalis R712] gi|291082386|gb|EFE19349.1| regulatory protein VanR [Enterococcus faecalis S613] gi|294451669|gb|EFG20124.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1] gi|295112307|emb|CBL30944.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterococcus sp. 7L76] gi|300848948|gb|EFK76701.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|306498978|gb|EFM68470.1| putative regulatory protein VanR [Enterococcus faecalis TX0411] gi|306502384|gb|EFM71661.1| putative regulatory protein VanR [Enterococcus faecalis TX0109] gi|306503364|gb|EFM72613.1| putative regulatory protein VanR [Enterococcus faecalis TX0860] gi|306509252|gb|EFM78312.1| putative regulatory protein VanR [Enterococcus faecalis TX0855] gi|306514785|gb|EFM83335.1| putative regulatory protein VanR [Enterococcus faecalis TX4248] gi|310625297|gb|EFQ08580.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|310629118|gb|EFQ12401.1| putative regulatory protein VanR [Enterococcus faecalis TX0102] gi|310633659|gb|EFQ16942.1| putative regulatory protein VanR [Enterococcus faecalis TX0635] gi|311287680|gb|EFQ66236.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|311291577|gb|EFQ70133.1| putative regulatory protein VanR [Enterococcus faecalis TX0470] gi|315026614|gb|EFT38546.1| putative regulatory protein VanR [Enterococcus faecalis TX2137] gi|315033601|gb|EFT45533.1| putative regulatory protein VanR [Enterococcus faecalis TX0017] gi|315036266|gb|EFT48198.1| putative regulatory protein VanR [Enterococcus faecalis TX0027] gi|315143581|gb|EFT87597.1| putative regulatory protein VanR [Enterococcus faecalis TX2141] gi|315148281|gb|EFT92297.1| putative regulatory protein VanR [Enterococcus faecalis TX4244] gi|315151246|gb|EFT95262.1| putative regulatory protein VanR [Enterococcus faecalis TX0012] gi|315153731|gb|EFT97747.1| putative regulatory protein VanR [Enterococcus faecalis TX0031] gi|315155043|gb|EFT99059.1| putative regulatory protein VanR [Enterococcus faecalis TX0043] gi|315158668|gb|EFU02685.1| putative regulatory protein VanR [Enterococcus faecalis TX0312] gi|315163391|gb|EFU07408.1| putative regulatory protein VanR [Enterococcus faecalis TX0645] gi|315165670|gb|EFU09687.1| putative regulatory protein VanR [Enterococcus faecalis TX1302] gi|315168477|gb|EFU12494.1| putative regulatory protein VanR [Enterococcus faecalis TX1341] gi|315172094|gb|EFU16111.1| putative regulatory protein VanR [Enterococcus faecalis TX1342] gi|315174227|gb|EFU18244.1| putative regulatory protein VanR [Enterococcus faecalis TX1346] gi|315576189|gb|EFU88380.1| putative regulatory protein VanR [Enterococcus faecalis TX0309B] gi|315579768|gb|EFU91959.1| putative regulatory protein VanR [Enterococcus faecalis TX0630] gi|315583000|gb|EFU95191.1| putative regulatory protein VanR [Enterococcus faecalis TX0309A] gi|323479197|gb|ADX78636.1| response regulator protein, vanR type [Enterococcus faecalis 62] gi|327536388|gb|AEA95222.1| response regulator [Enterococcus faecalis OG1RF] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 10/169 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R SQ+P+I ++ + + +G DD V KP + E++ARV +I RR + Sbjct: 61 MEVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSQ 120 Query: 121 VSNNRA-----ETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173 + + E GP+ + D + + ++G+ L E IL YL+A+ RV + +I Sbjct: 121 MQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGIL-YLLASHPNRVFSADEI 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221 F ++ + V V H+S LR K+ G + V + +GY ID Sbjct: 180 FERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227 >gi|302381990|ref|YP_003817813.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192618|gb|ADL00190.1| two component transcriptional regulator, winged helix family [Brevundimonas subvibrioides ATCC 15264] Length = 226 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 103/220 (46%), Gaps = 9/220 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D A + GD G +++ E +L + DV ++ L K + V Sbjct: 4 LLVEDDADLSRQLKMALGDAGYAVDHAADGEEAHFLGDTEPYDVVVLDLGLP-KIDGVSV 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRLKV 121 L R R P++ ++ + + FD+G DD + KP H E + A + R + Sbjct: 63 LERWRRDGKTTPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALLRRSAGI 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 ++ G +R+ V GE L E R+L Y+M ++G+ +++T++ +Y Sbjct: 123 ASATLSCGGLRLDPKAARATVNGEPLRLTSLEYRLLHYMMMHQGRVISRTELVEHLYDQD 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + N +E I +LRK K+G D +++ R LGY + Sbjct: 183 FDR--DSNTIEVFIGRLRK----KVGSDRIETVRGLGYRL 216 >gi|269102403|ref|ZP_06155100.1| putative transcriptional regulatory protein PhoP [Photobacterium damselae subsp. damselae CIP 102761] gi|268162301|gb|EEZ40797.1| putative transcriptional regulatory protein PhoP [Photobacterium damselae subsp. damselae CIP 102761] Length = 224 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 3/148 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130 ++P++ ++ + Q + ++G DD + KP E++AR++A+ RR G Sbjct: 72 RLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEELVARLSALVRRSAGFVKPEMTAGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 IRV + + EV L E +LEYLM + + V+K ++ +Y D+ + N + Sbjct: 132 IRVDLLAKQVFINEEVLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE--DQEGDPNTI 189 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E IS+LRKK +P+ + R GY Sbjct: 190 EVMISRLRKKFTKTGQENPISTIRGQGY 217 >gi|256544847|ref|ZP_05472219.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170] gi|256399736|gb|EEU13341.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170] Length = 226 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 5/146 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P++ +S + D G DD + KP RE+LARV A RR +V Sbjct: 62 EICQNIRIKSTIPILILSAKIDEFDKVKGLDLGADDYITKPFRPRELLARVNAQLRRSQV 121 Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N + IR+++ E G L R E +L +L N + ++ Q++ I Sbjct: 122 FNKENLEIIDLENIRIYTKEYKVEKDGRDLDLSRNEFELLIFLSKNPRQVFSREQLYERI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN 203 +G FD + N V I++LR+K+ + Sbjct: 182 WG-FDSYGDLNTVTVTINRLRQKIED 206 >gi|238758863|ref|ZP_04620036.1| Transcriptional regulatory protein baeR [Yersinia aldovae ATCC 35236] gi|238702971|gb|EEP95515.1| Transcriptional regulatory protein baeR [Yersinia aldovae ATCC 35236] Length = 239 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 2/158 (1%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G + + R IR S VP++ ++ L + G DD + KP RE++ARV Sbjct: 63 LMLPGSDGITICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARV 122 Query: 113 AAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 I RR + +A ++ P+ + QG + L E R+L+ L G ++ Sbjct: 123 KTILRRCHQAREQATDSAPLIIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 Q+ + +Y + V + ++SHI LR+KL + G P Sbjct: 183 QLLNNLYDDY-RVVTDRTIDSHIKNLRRKLESLDGDKP 219 >gi|158321109|ref|YP_001513616.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158141308|gb|ABW19620.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 223 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP+I IS + + G DD + KP + A+V A+ RR Sbjct: 67 IRKVSKVPIIFISSTSDNMNIVMAMNMGGDDFIIKPFDLNVLTAKVQAMLRRTYDFSGQT 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + +GE L + + +IL+ LM N+G V++ I S ++ D Sbjct: 127 HLLEHNEAILNINDNTLTYRGEKIELTKNDYKILQLLMENKGMVVSRDTIMSRLWET-DS 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++EN + +I++LRKKL ++ + +K+ +GY + Sbjct: 186 FIDENTLTVNITRLRKKLEAVGLYNFITTKKGIGYMV 222 >gi|126437395|ref|YP_001073086.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|126237195|gb|ABO00596.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 233 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 15/190 (7%) Query: 23 GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75 G+ L GF+ +++ E L+S+ + +A ++ VL+ ++ A + VP+ Sbjct: 26 GLRLSGFDVSTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPI 131 +S S+ + ++G DD + KP E++ARV A+ RR S+ + GP+ Sbjct: 83 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSSATFSSETIQVGPL 142 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V GR V G L +RE +L L ++ +++ Q+ ++G +D A + NVV+ Sbjct: 143 EVDIPGRRARVNGADVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 201 Query: 192 SHISKLRKKL 201 I LR+KL Sbjct: 202 VFIGYLRRKL 211 >gi|21230432|ref|NP_636349.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769574|ref|YP_244336.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992783|ref|YP_001904793.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. B100] gi|21111993|gb|AAM40273.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574906|gb|AAY50316.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734543|emb|CAP52753.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 14/182 (7%) Query: 33 EFEEWLQSSAREDVSAI-----EAFLIG---KGEKVLELPRIIRAHS---QVPLIGISDY 81 EFE ARE +AI + L+ G L+L R R S ++P+I ++ Sbjct: 26 EFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLDLARRWRKESLTREIPIIMLTAR 85 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE 141 + ++GVDD V KP RE+LAR+ A+ RR + + R+ DG Sbjct: 86 GEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTREDDEDGSVAVGRLRIDGAAHR 145 Query: 142 VQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 V P+P E R+L + M + + +TQ+ ++G VEE ++ HI +LRK Sbjct: 146 VFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVWG-GSVYVEERTIDVHIRRLRK 204 Query: 200 KL 201 L Sbjct: 205 TL 206 >gi|148545612|ref|YP_001265714.1| DNA-binding response regulator CreB [Pseudomonas putida F1] gi|148509670|gb|ABQ76530.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 226 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 17/226 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLE--GFNSLEFEEWLQSSAREDVSAIEAFLIGKGE- 58 ++++D A + D + DG S E S ++ Q A D+ ++ IG + Sbjct: 4 ILIVEDEAAIADTLVYALQADGHSTEWVTLGSAALDQQRQRPA--DLVILD---IGLPDI 58 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E R +R ++VP++ +S + + G DD V KP RE+ ARV AI +R Sbjct: 59 SGFETCRQLRRFTEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKR 118 Query: 119 LKVSNNRAE-TGPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + RAE G +F D ++ + + L R E R+L+ L+ + ++ Q+ Sbjct: 119 MA---PRAEVVGETTLFHLDTLRMQITYRSQPLTLTRHEFRLLQCLLEQPQRVFSREQLL 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A+ G+ + E ++SHI LR KLR G +P+ + R LGYS Sbjct: 176 DAL-GVASDVGYERTIDSHIKSLRAKLRQVAGDAEPIQTHRGLGYS 220 >gi|331092423|ref|ZP_08341248.1| hypothetical protein HMPREF9477_01891 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401266|gb|EGG80855.1| hypothetical protein HMPREF9477_01891 [Lachnospiraceae bacterium 2_1_46FAA] Length = 226 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/225 (22%), Positives = 111/225 (49%), Gaps = 10/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D + +++ + G+ GF + ++ ++ A E + ++ GE Sbjct: 1 MIYCVEDDSNIRELVVYTLESTGMKARGFE--DGRKFTEALAFETPELVLLDIMLPGEDG 58 Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ + +R +++ +P+I ++ S + D+G DD + KP E+++R+ A+ R Sbjct: 59 IEILKKLRNNAKTKNIPVIMVTAKGSEYDKVVGLDTGADDYITKPFGMMELVSRIKAVLR 118 Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + + + G + + + +V G+ L +E +LE LM NR + + ++ Sbjct: 119 RTTREKEETKYQIGNLVIDVEKHKVKVDGKSVTLTLKEFELLEKLMKNRHIVLTRDRLLE 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D + E V+ H+ LR+KL + + +++ R +GY I Sbjct: 179 EIWG-YDFSGETRTVDVHVRTLRQKLGD--AGELIETVRGVGYRI 220 >gi|283853868|ref|ZP_06371084.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] gi|283570743|gb|EFC18787.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] Length = 251 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 8/177 (4%) Query: 46 VSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 V+ I+ L G G KV+E R R P+I +S S++ + ++G DD ++KP Sbjct: 75 VAVIDVMLPGMDGLKVIEELR--RRKVNTPIIILSAKRSVEDRVRGLETGSDDYISKPFS 132 Query: 105 HREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A+ RR ++ R G + + RD L RE +LEY M Sbjct: 133 FSELLARVQALIRRSTSASEPTRLSVGELSMNLLTRDVHRGETAVQLQPREFALLEYFMR 192 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 N GK ++KT I ++ FD + N+V+ + +LR K+ + + R +GY Sbjct: 193 NPGKVLSKTMIMEHVWDYHFDP--QTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGY 247 >gi|222082681|ref|YP_002542046.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221727360|gb|ACM30449.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 220 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 78/151 (51%), Gaps = 10/151 (6%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P+I ++ + +D D+G DD + KP E+LARV A+ RR S+ G + Sbjct: 70 MPVIILTARDGWRDKVDGMDAGADDYLTKPFRMEELLARVRALMRRAAGQSSPILSNGVL 129 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--ENV 189 + + R +G+ + E R+L YL+ N G ++++QI +IY DE E N Sbjct: 130 ELDTRQRTVSFRGQPVQVTALEYRLLAYLLHNAGTVLSRSQIADSIY---DEETELLSNA 186 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E +++LR+K + ++++R GY I Sbjct: 187 LEVVVARLRRKFDGTV----IETRRGQGYLI 213 >gi|163741992|ref|ZP_02149381.1| two-component response regulator [Phaeobacter gallaeciensis 2.10] gi|161384713|gb|EDQ09093.1| two-component response regulator [Phaeobacter gallaeciensis 2.10] Length = 230 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/198 (27%), Positives = 94/198 (47%), Gaps = 18/198 (9%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLELPRII 67 A+ K GY LF DG N+L+ ++R+ + + IG E LE+ R I Sbjct: 21 AVEKAGYETLFASDG-----LNALK-------ASRQQLPDLIVLDIGLPEMDGLEVCREI 68 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R S VP++ ++ + + G DD + KP RE++AR+ AI +R + E Sbjct: 69 RKSSDVPILFLTARDDEIDRIVGLEIGADDYLTKPFSPRELVARIKAILKRSTPTPAPPE 128 Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 G +++ ++ + G L E R+L L+A +++TQ+ +YG ++ Sbjct: 129 AVLEQGSLQLNAERHLCQFGGTPVSLTGSEFRLLATLLARPDHVISRTQLVDTLYG-YNI 187 Query: 184 AVEENVVESHISKLRKKL 201 V + ++SHI +R KL Sbjct: 188 HVSDRTIDSHIRNIRAKL 205 >gi|92117426|ref|YP_577155.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91800320|gb|ABE62695.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 221 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 78/149 (52%), Gaps = 8/149 (5%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 +P++ ++ S +D D+G DD + KP E+LAR+ +I RR + T Sbjct: 72 HMPVLVLTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRRSAGHGSSVMTAG- 130 Query: 132 RVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + D R +V +G L E R++ +L+ NRG+ V++ ++ IYG +E + N Sbjct: 131 EITLDERQMKVTRRGVPIALSPLEYRLIAHLLRNRGRVVSQQELDENIYGHGEEH-DSNT 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E + ++RK KLG D ++++R GY Sbjct: 190 LEVLVGRVRK----KLGADVIETRRGFGY 214 >gi|83718618|ref|YP_441229.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|83652443|gb|ABC36506.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 241 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 81 IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR- 139 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + R+E+ G + + + G L RE +LE L+A G ++K+Q+ Sbjct: 140 --QSGRSESVIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 197 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 198 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 237 >gi|332759462|gb|EGJ89770.1| sensor protein phoQ [Shigella flexneri 2747-71] Length = 709 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 2/134 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P++ ++ S Q ++ +G DD V KP H E++AR+ A+ RR +++ P Sbjct: 73 LPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 +V R+ + EV L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 133 QVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 191 Query: 192 SHISKLRKKLRNKL 205 + +LRKK R+ + Sbjct: 192 VLMGRLRKKFRHNI 205 >gi|330820065|ref|YP_004348927.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] gi|327372060|gb|AEA63415.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] Length = 243 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 13/172 (7%) Query: 53 LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L+ G LE+ R RA + P+I IS S + + G DD + KP E++AR Sbjct: 56 LMLPGVDGLEICRRARAMERYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVAR 115 Query: 112 VAAIYRRLKV--SNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANR 164 V A+ RR++ + R+E G + V DP V G L RE +L + + Sbjct: 116 VKALLRRVEALSRDTRSEAGRVDVGGLTLDPLTREAAVDGAAIDLTPREFDLLYHFARHP 175 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 GK ++T + +A++G E E+ V +HI++LR K+ DP R L Sbjct: 176 GKAFSRTDLLNAVWGYQHEGY-EHTVNTHINRLRAKIEA----DPAQPARIL 222 >gi|302336008|ref|YP_003801215.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301319848|gb|ADK68335.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 222 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/231 (27%), Positives = 107/231 (46%), Gaps = 26/231 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDG---VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 V+++D A ++ L G G V+ F+SL E+ L++S + + + Sbjct: 4 IVVVEDDAPLRSSLCELLGRSGYEVVTPHVFDSL-VEDVLEASPDLVLLDLGLPGLDGTT 62 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL RAHS VP++ ++ + + G DD V+KP +LA V A+ RR Sbjct: 63 VCREL----RAHSGVPIMVVTSRSTEMDEVMCMTFGADDFVSKPYSSYVLLAHVEALLRR 118 Query: 119 L-KVSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + S + G + R ++GRD E L + E RIL LM N G V + Sbjct: 119 VGGASGSTLACGGLSLDVARSRALANGRDVE-------LTKNELRILSLLMRNSGVIVPR 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 I ++ D V++N + ++++LR+ L +K+G + + R GYS+ Sbjct: 172 ETIMCELWD-SDTFVDDNTLTVNVNRLRQTL-SKIGCGQLLVTHRGQGYSV 220 >gi|195952759|ref|YP_002121049.1| two component transcriptional regulator, winged helix family [Hydrogenobaculum sp. Y04AAS1] gi|195932371|gb|ACG57071.1| two component transcriptional regulator, winged helix family [Hydrogenobaculum sp. Y04AAS1] Length = 233 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 4/130 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 + P + ++ + L F+ G DD + KP +E+LAR+ AI RR + + + AE Sbjct: 72 KTPFLILTAKDGINDKLTAFNIGADDYLTKPFDMKELLARIEAIVRRTRQTGS-AELICN 130 Query: 132 RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 ++ D + +Q G+V P +++ ILE L++N G+ V Q+ S +G+ DE Sbjct: 131 KLVLDTSNFTIQIDGKVIPATKKQFLILEKLISNVGRVVTVEQLLSYAWGI-DEEPSSFS 189 Query: 190 VESHISKLRK 199 + SHI +R+ Sbjct: 190 LRSHIRTIRR 199 >gi|15615719|ref|NP_244023.1| two-component response regulator involved in phosphate regulation [Bacillus halodurans C-125] gi|10175779|dbj|BAB06876.1| two-component response regulator involved in phosphate regulation [Bacillus halodurans C-125] Length = 239 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 73/139 (52%), Gaps = 12/139 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----------GPIRVFSDGRDPEVQ 143 G DD + KP RE++ARV AI RR+ + N E G + ++ D + ++ Sbjct: 96 GADDYMTKPFSPREVVARVRAILRRVGHAQNNHEDNSRSTSTLSFGNVEIYPDNYEVYLK 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR- 202 G+ L +E +L YL ++G+ + + Q+ +A++ ++ + +V+ HIS LR+K+ Sbjct: 156 GQPLELTPKEFELLLYLANHKGRVLTRDQLLNAVWN-YEFVGDTRIVDVHISHLREKIEP 214 Query: 203 NKLGFDPVDSKRFLGYSID 221 N + + R LGY ++ Sbjct: 215 NTKKPIYIKTIRGLGYKLE 233 >gi|330502429|ref|YP_004379298.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] gi|328916715|gb|AEB57546.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] Length = 230 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 2/142 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + Sbjct: 70 LARLRDRGQTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLG 129 Query: 123 NNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + V+ G R ++GE L RE+ +LE ++A G+ ++K Q+ + ++GL Sbjct: 130 GEQLQRCGDLVYDLGARRFSLEGEALSLTAREQAVLEAMIARPGRVMSKEQLAAQVFGL- 188 Query: 182 DEAVEENVVESHISKLRKKLRN 203 DE + +E +I +LRKKL Sbjct: 189 DEDASPDAIEIYIHRLRKKLEG 210 >gi|238917107|ref|YP_002930624.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] gi|238872467|gb|ACR72177.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] Length = 225 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S+VP+I ++ L F+ G D+ + KP + + ARV AI RR Sbjct: 65 EVCRQIRKDSKVPIIMLTAKGEEMDELQGFECGADEYIAKPFSPKILTARVDAIIRRAYG 124 Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + D ++ GE L +E +L Y + N+G +++ +I + ++ Sbjct: 125 VDSNEIIEIGGITIDKAAHIVKIDGEEIELSYKEFELLTYFVENKGLALSREKILNNVWN 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLRKK+ K Sbjct: 185 -YDYYGDARTIDTHVKKLRKKMGEK 208 >gi|254426228|ref|ZP_05039945.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188651|gb|EDX83616.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 227 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 103/213 (48%), Gaps = 15/213 (7%) Query: 1 MFVLI--DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKG 57 M +LI DD A ++ IAL + G ++G + + +WL S D+ ++ L + G Sbjct: 1 MIILIVEDDPAQLRPLCIAL-SESGHLVDGVENAQEAQWLVSHKDYDLLILDWMLPVLSG 59 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLD---FFDSGVDDVVNKPIHHREILARVAA 114 + + R + + V ++ D TT D D+G DD + KP+ E+LARV A Sbjct: 60 VSLCQHYRTLGKIAPVMMLTAKD-----TTADKVVGLDAGADDYLVKPVDIPELLARVRA 114 Query: 115 IYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR + +R G + + + E Q L RE ++EYLM G+ + + I Sbjct: 115 LGRRSPQWHGDRLSLGDLYLNTSTLTLERQKSCIRLSSREFHLMEYLMRRSGQVITRDNI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 ++ ++ E N V + I +LR++L N+LG Sbjct: 175 EQTLW-IWGTEPESNAVTALIWRLRQRL-NELG 205 >gi|182419284|ref|ZP_02950537.1| DNA-binding response regulator [Clostridium butyricum 5521] gi|237668433|ref|ZP_04528417.1| two component transcriptional regulator, winged helix family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376924|gb|EDT74495.1| DNA-binding response regulator [Clostridium butyricum 5521] gi|237656781|gb|EEP54337.1| two component transcriptional regulator, winged helix family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 222 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 86/159 (54%), Gaps = 5/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR ++ +P+I ++ S + + G DD + KP + + +LAR+ ++ RR V Sbjct: 63 ICREIRKNNNIPIIIVTSRDSDMDEIMSINLGADDFITKPYNTQVLLARIGSLLRRTAVG 122 Query: 123 N--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + E +++ + + + L + E +IL L+ N+ V++ + ++ Sbjct: 123 NVQDILEHKGLKLNINKGEVSFKDRSIDLSKNEFKILSCLIKNKETIVSREDLMDYLWN- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 D +++N + ++++LRKKL + LGF + +++KR LGY Sbjct: 182 SDLFIDDNTLSVNVTRLRKKL-DDLGFKNGIETKRGLGY 219 >gi|30022664|ref|NP_834295.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus ATCC 14579] gi|206969884|ref|ZP_03230838.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134] gi|218233317|ref|YP_002369385.1| DNA-binding response regulator PhoP [Bacillus cereus B4264] gi|218899742|ref|YP_002448153.1| DNA-binding response regulator PhoP [Bacillus cereus G9842] gi|228903106|ref|ZP_04067242.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] gi|228910413|ref|ZP_04074228.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] gi|228923333|ref|ZP_04086621.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228941768|ref|ZP_04104315.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954858|ref|ZP_04116878.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960858|ref|ZP_04122491.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|228967686|ref|ZP_04128706.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228974692|ref|ZP_04135258.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981286|ref|ZP_04141586.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|229048296|ref|ZP_04193864.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|229072091|ref|ZP_04205300.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|229081841|ref|ZP_04214333.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|229112054|ref|ZP_04241597.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|229129873|ref|ZP_04258839.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|229147149|ref|ZP_04275507.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|229152784|ref|ZP_04280967.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|229180908|ref|ZP_04308243.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|229192790|ref|ZP_04319748.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|296505061|ref|YP_003666761.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] gi|29898223|gb|AAP11496.1| Alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus ATCC 14579] gi|206735572|gb|EDZ52740.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134] gi|218161274|gb|ACK61266.1| DNA-binding response regulator PhoP [Bacillus cereus B4264] gi|218542946|gb|ACK95340.1| DNA-binding response regulator PhoP [Bacillus cereus G9842] gi|228590629|gb|EEK48490.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|228602465|gb|EEK59951.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|228630604|gb|EEK87250.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|228636259|gb|EEK92731.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|228653564|gb|EEL09436.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|228671377|gb|EEL26678.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|228701429|gb|EEL53923.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|228711025|gb|EEL62991.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|228723021|gb|EEL74398.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|228778486|gb|EEM26753.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|228785095|gb|EEM33108.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792019|gb|EEM39601.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228798754|gb|EEM45734.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804847|gb|EEM51446.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817980|gb|EEM64058.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228836287|gb|EEM81640.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228849179|gb|EEM94018.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] gi|228856515|gb|EEN01039.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] gi|296326113|gb|ADH09041.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] gi|326942372|gb|AEA18268.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis serovar chinensis CT-43] Length = 239 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 12/139 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNR--AET--------GPIRVFSDGRDPEVQ 143 G DD + KP RE++ARV AI RR K+ AE +++ + + Q Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVAEAPDEDSITIAELKILPEFYEAYFQ 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202 G L +E +L YL N+ + + + Q+ SA++ +D A + +V+ HIS LR K+ + Sbjct: 156 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQ 214 Query: 203 NKLGFDPVDSKRFLGYSID 221 N + + R LGY ++ Sbjct: 215 NTKKPTYIKTIRGLGYKLE 233 >gi|150015424|ref|YP_001307678.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901889|gb|ABR32722.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 225 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 79/155 (50%), Gaps = 2/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-A 126 R + +P++ ++ L + F+ G DD + KP E+L R+ A+ RR KV+ +R Sbjct: 69 RYYEDMPILMLTAKSELSQKVKGFELGTDDYLTKPFEIDELLVRIKALLRRYKVAASRII 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + E F +P +E +L L + GK +++ ++ ++GL D Sbjct: 129 NIGNLVMDKSSYTVISNNEQFDIPMKEFELLFMLGSYPGKTLSRDRLIEEVWGL-DFEGN 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR++ ++ + + + R LGY ++ Sbjct: 188 ERTLDVHINRLRERFQSDIYKFKITTIRGLGYRVE 222 >gi|75758377|ref|ZP_00738500.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228904788|ref|ZP_04068842.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 4222] gi|74494103|gb|EAO57196.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228854802|gb|EEM99406.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 4222] Length = 235 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 11/167 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LE+ R++ + VP + ++ + D G +D + KP +LAR+ + RR Sbjct: 70 LEVARLVNKNKTVPYLLLTSRNEPLDIMQGLDMGAEDYITKPYDLTVLLARIRTVLRRTS 129 Query: 120 -KVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K S+N + G I + V G+ L + +L Y + ++GK ++K +++ Sbjct: 130 SKESSNGGVTQCGNIEINLLTHKVTVDGKQVHLTNQLFELLHYFITHKGKIISKEELYKN 189 Query: 177 IYGLFD--EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G +D E E N +E +I ++LRN +G D + + R GY ++ Sbjct: 190 IWG-YDPSELQETNTLEVNI----RRLRNSIGIDIIKTVRGKGYVLE 231 >gi|255281631|ref|ZP_05346186.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469] gi|255267698|gb|EET60903.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469] Length = 227 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 3/129 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPL 149 F +G DD + KP++ E+L R+ A+ RR +++++R T G + D +GE L Sbjct: 92 FLAGTDDYMTKPVNEEELLLRIGALLRRARIASDRQLTVGSTTLNFDSLTVSCRGETQLL 151 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 P++E +L L++ + Q+ I+G ++ + + HI++LRK+ N F Sbjct: 152 PQKEFFLLYKLLSFPNHIFTRLQLMEEIWGPCTQSTDAT-ISVHINRLRKRFENSPDFSI 210 Query: 210 VDSKRFLGY 218 + + R LGY Sbjct: 211 I-TIRGLGY 218 >gi|261409935|ref|YP_003246176.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286398|gb|ACX68369.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 233 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 13/162 (8%) Query: 65 RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R+IR+HS VP+I +S D+P+ + G DD + KP H ++A++ A RR+ Sbjct: 69 RMIRSHSNVPIIFLSSRDHPT--DMVMSMQLGADDFIQKPFHFDVLIAKIQATLRRVYNY 126 Query: 123 NN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N R G F QG L + E IL+ LM + + V++ + ++ Sbjct: 127 NTERTELRTWRGATVEFGKNTISSPQGTA-ELTKNEMFILKILMERKNQIVSREDLIKSL 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 + + V +N + ++++LRKKL LG DP +++K GY Sbjct: 186 WD-NEHFVSDNTLTVNVNRLRKKLE-PLGLDPYIETKVGQGY 225 >gi|325922699|ref|ZP_08184439.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas gardneri ATCC 19865] gi|325546816|gb|EGD17930.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas gardneri ATCC 19865] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 14/182 (7%) Query: 33 EFEEWLQSSAREDVSAI-----EAFLIG---KGEKVLELPRIIRAHS---QVPLIGISDY 81 EFE ARE +AI + L+ G L+L R R S ++P+I ++ Sbjct: 26 EFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLDLARRWRKESLTREIPIIMLTAR 85 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE 141 + ++GVDD V KP RE+LAR+ A+ RR + + R+ DG Sbjct: 86 GEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTREDDEDGSVAVGRLRIDGAAHR 145 Query: 142 VQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 V P+P E R+L + M + + +TQ+ ++G VEE ++ HI +LRK Sbjct: 146 VFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVWG-GSVYVEERTIDVHIRRLRK 204 Query: 200 KL 201 L Sbjct: 205 TL 206 >gi|256826808|ref|YP_003150767.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256582951|gb|ACU94085.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 226 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 71/135 (52%), Gaps = 2/135 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126 R + +P++ ++ ++ ++ D+G DD + KP E+LAR+ ++ RR V Sbjct: 68 REGNALPILMLTARGEIRDKVEGLDAGADDYMTKPFAPVELLARIRSLTRRTGSVEFETL 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 I + D + E +G+ L ++E I+ LMA + +K + S ++G +D Sbjct: 128 SFNDITLDLDACELECKGKRIRLSQKEFDIMHVLMAQPSRVASKDSLISKVWG-YDSTAA 186 Query: 187 ENVVESHISKLRKKL 201 +N VE+++S LRKKL Sbjct: 187 DNNVEAYVSFLRKKL 201 >gi|229182985|ref|ZP_04310217.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228600442|gb|EEK58030.1| Two-component response regulator [Bacillus cereus BGSC 6E1] Length = 213 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 50 ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 106 Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N R + + D V E L E +L + + +++ Q+ I+G Sbjct: 107 TNQRTQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 166 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D+ K G W Sbjct: 167 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 208 >gi|219523859|gb|ACL14892.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Hartford] Length = 215 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/214 (24%), Positives = 100/214 (46%), Gaps = 5/214 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ ++ + D++ ++ L E L Sbjct: 5 LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 62 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R+ +P++ ++ Q ++ SG DD V KP H E++AR+ A+ RR Sbjct: 63 LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ V EV L E I+E L+ N GK V+K + +Y Sbjct: 123 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214 E E + ++ + +LRKK++ + D + + R Sbjct: 182 DAELRESHTIDVLMGRLRKKIQAQYPHDVITTVR 215 >gi|149374419|ref|ZP_01892193.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Marinobacter algicola DG893] gi|149361122|gb|EDM49572.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Marinobacter algicola DG893] Length = 241 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 78/155 (50%), Gaps = 8/155 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VLE R + + Q+P++ ++ S + D+G DD + KP E++AR+ A+ Sbjct: 59 GIEVLESVRA-QLNWQIPVVFLTQRDSETDIVRALDAGADDYLAKPAREAELVARINALA 117 Query: 117 RRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + GP + + R + G V L ++ + +L N+G+ + + + Sbjct: 118 RRTSPDAEKESLQYGPFEINTQLRTIALHGNVLTLTDKDFDLTLFLFQNQGRLLTREMLL 177 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 ++GL + + V++H+S+LR+ +LG +P Sbjct: 178 ERVWGLAKD-INTRTVDTHMSRLRR----RLGLNP 207 >gi|170720246|ref|YP_001747934.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169758249|gb|ACA71565.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 223 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 70/130 (53%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPI 131 +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + R + GP+ Sbjct: 73 LPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLGGERQQRCGPL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 D R + + L RE+ +LE L+A G+ ++K Q+ + ++GL DE + +E Sbjct: 133 VYDLDTRRFALGEDNLTLTSREQSVLEALIARPGRVMSKEQLAAQVFGL-DEEASPDAIE 191 Query: 192 SHISKLRKKL 201 +I +LRKKL Sbjct: 192 IYIHRLRKKL 201 >gi|317056581|ref|YP_004105048.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315448850|gb|ADU22414.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 223 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 3/154 (1%) Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 I R ++ +P+I +S L F G+DD + KP+ E+ RV A+ RR ++ + Sbjct: 67 IRRLNANIPIIFLSARYDLSAKDKGFRLGIDDYMVKPVELAELDMRVRALLRRANIAEAK 126 Query: 126 AET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 T G + + SD V E PL RE IL L++ K ++ Q+ +G+ D Sbjct: 127 KLTVGDLTLDSDAMTGTVNSEEMPLSTREFNILFKLLSYPNKTFSRAQLMDEFWGV-DSD 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ +I++LR K GF+ + + R +GY Sbjct: 186 ASLRSVDVYITRLRDKTAACTGFE-IKTIRGIGY 218 >gi|293609501|ref|ZP_06691803.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827953|gb|EFF86316.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 223 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 4/158 (2%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123 +++R S++P+I ++ + + + G DD + KP + E+LAR+ ++ RR + + Sbjct: 64 QVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQYLQE 123 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182 N +++ G G + L + E +L YL+ N+ + V + QI S ++ + FD Sbjct: 124 NELSISDLKMDVVGHKVWRSGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNINFD 183 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N ++ + +LR K+ + + R LGY I Sbjct: 184 --TDTNFIDVAVRRLRSKIDEGYELKLIHTIRGLGYKI 219 >gi|229019811|ref|ZP_04176613.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] gi|229026037|ref|ZP_04182420.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|228735253|gb|EEL85865.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|228741482|gb|EEL91680.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] Length = 239 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 12/139 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGP---------IRVFSDGRDPEVQ 143 G DD + KP RE++ARV AI RR K+ + P +++ + + Q Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVSEAPDEESIIIAELKILPEFYEAYFQ 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202 G L +E +L YL N+ + + + Q+ SA++ +D A + +V+ HIS LR K+ + Sbjct: 156 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQ 214 Query: 203 NKLGFDPVDSKRFLGYSID 221 N + + R LGY ++ Sbjct: 215 NTKKPTYIKTIRGLGYKLE 233 >gi|218699471|ref|YP_002407100.1| transcriptional regulatory protein YedW [Escherichia coli IAI39] gi|218369457|emb|CAR17222.1| DNA-binding response regulator in two-component system with YedV [Escherichia coli IAI39] Length = 223 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 3/178 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 42 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 101 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +++ S + L R+E ++L L + Sbjct: 102 FSFSELLARVRAQLRQHYTLNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLAS 161 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ + +T I S I+G+ FD + N V+ I +LR K+ + + + R +GYS Sbjct: 162 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 >gi|218441450|ref|YP_002379779.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218174178|gb|ACK72911.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 614 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 2/150 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 Q P+I ++ S + D+G DD + KP++ ++AR+ A++RR K +S++ Sbjct: 72 QEPIILLTARDSSTDQIIGLDAGADDYIVKPVNLETLMARIRALFRRKKNISSSVIHWEN 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 ++V + + G L +E +LE + N + ++ I ++ L D EE V Sbjct: 132 LQVNLNNCEVNSHGNSIHLTAKEYSLLELFLMNSQRIFSRRVILEKLWDLADSPGEE-TV 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +HI LR+KL+ DP+++ LGY + Sbjct: 191 STHIKCLRQKLKAAGVPDPIETVYGLGYRL 220 >gi|196047153|ref|ZP_03114370.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196022023|gb|EDX60713.1| DNA-binding response regulator [Bacillus cereus 03BB108] Length = 225 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N R + + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQRTQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D+ K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220 >gi|154503427|ref|ZP_02040487.1| hypothetical protein RUMGNA_01251 [Ruminococcus gnavus ATCC 29149] gi|153796094|gb|EDN78514.1| hypothetical protein RUMGNA_01251 [Ruminococcus gnavus ATCC 29149] Length = 219 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 3/153 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + P++ ++ ++ ++ SG DD + KP E+ ARVAA RR A Sbjct: 66 IRRYVDCPILFLTAKAEEKSIMEGLGSGGDDYICKPFGIGELRARVAAHLRREAREKTHA 125 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E IR G+ +V E PL + E I E L N G+ +K +IF +++G ++ Sbjct: 126 VEISGIRFDLAGKSVQVGEEKIPLTKSEYEISELLALNHGQVFSKEKIFESVFG-YERES 184 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + + H+ +R K + G + + +GY Sbjct: 185 DSSAITEHVKNIRAKF-ARYGKKNIQTVWGIGY 216 >gi|149926102|ref|ZP_01914365.1| DNA-binding response regulator [Limnobacter sp. MED105] gi|149825390|gb|EDM84601.1| DNA-binding response regulator [Limnobacter sp. MED105] Length = 222 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 104/220 (47%), Gaps = 31/220 (14%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + L K GY A + +G E +E D+ ++ L GK L++ + Sbjct: 18 KQLGKAGYAADWVQNGNEAEAQGCIE---------PYDLVVLDLGLPGKSG--LDVLKGW 66 Query: 68 RAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118 RA ++P+I ++ + Q ++ F++G DD V KP E+LAR+ A+ +R Sbjct: 67 RAQGLKLPVIVLTARGTWQEKVEGFNAGADDYVPKPFQTEELLARIGAVLKRAVGTAPES 126 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 LK + V D +P+ L E R+L Y M + G+ ++KT++ +Y Sbjct: 127 LKAKGLLLDETLQTVKVDNEEPQ------QLTGTEFRLLRYFMLHPGQPLSKTRLTEHVY 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +D + NV+E ++++LRK K+G + +++ GY Sbjct: 181 E-YDADKDSNVMEVYVNRLRK----KIGAQWIQTRKGQGY 215 >gi|66048256|ref|YP_238097.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|71734112|ref|YP_277191.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485715|ref|ZP_05639756.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628101|ref|ZP_06461055.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651289|ref|ZP_06482632.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aesculi str. 2250] gi|289677407|ref|ZP_06498297.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. syringae FF5] gi|298489418|ref|ZP_07007429.1| Phosphate regulon transcriptional regulatory protein phoB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302187091|ref|ZP_07263764.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. syringae 642] gi|63258963|gb|AAY40059.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|71554665|gb|AAZ33876.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. phaseolicola 1448A] gi|298155992|gb|EFH97101.1| Phosphate regulon transcriptional regulatory protein phoB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320321732|gb|EFW77830.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. glycinea str. B076] gi|320331482|gb|EFW87422.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. glycinea str. race 4] gi|330870966|gb|EGH05675.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330890623|gb|EGH23284.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. mori str. 301020] gi|330937451|gb|EGH41417.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. pisi str. 1704B] gi|330952444|gb|EGH52704.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae Cit 7] gi|330970220|gb|EGH70286.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aceris str. M302273PT] gi|330986909|gb|EGH85012.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011999|gb|EGH92055.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 24/213 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 +++DD A +++ IA+ + + G++ +E E Q+ A + D+ ++ L Sbjct: 6 ILIVDDEAPIRE-MIAV----ALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWML--P 58 Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ +P+I ++ + + G DD + KP RE++AR+ Sbjct: 59 GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR ++ A PI V DP + G+ + E R+L++ M ++ + Sbjct: 119 AVLRRAGPTDGEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ ++G + VEE V+ HI +LRK L Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207 >gi|238799012|ref|ZP_04642473.1| Transcriptional regulatory protein baeR [Yersinia mollaretii ATCC 43969] gi|238717153|gb|EEQ09008.1| Transcriptional regulatory protein baeR [Yersinia mollaretii ATCC 43969] Length = 241 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 2/158 (1%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G + + R IR S VP++ ++ L + G DD + KP RE++ARV Sbjct: 65 LMLPGSDGITICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARV 124 Query: 113 AAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 I RR + +E+ P+ + QG + L E R+L+ L G ++ Sbjct: 125 KTILRRCHQQREQPSESAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSRE 184 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 Q+ + +Y + V + ++SHI LR+KL + G P Sbjct: 185 QLLNNLYDDY-RVVTDRTIDSHIKNLRRKLESLDGEKP 221 >gi|15595660|ref|NP_249154.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa PAO1] gi|254243559|ref|ZP_04936881.1| two-component response regulator CreB [Pseudomonas aeruginosa 2192] gi|9946324|gb|AAG03852.1|AE004484_4 two-component response regulator CreB [Pseudomonas aeruginosa PAO1] gi|126196937|gb|EAZ61000.1| two-component response regulator CreB [Pseudomonas aeruginosa 2192] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 80/159 (50%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122 +R S+VP+I ++ + + + G DD V KP RE+ ARV AI +R+ Sbjct: 67 LRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAPRPAAL 126 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 A +GP +V + + L R E R+L+ L+ + ++ Q+ A+ G+ Sbjct: 127 EEAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL-GVAS 185 Query: 183 EAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYS 219 EA E ++SHI LR KLR N+ G + + + R LGYS Sbjct: 186 EAGYERNIDSHIKSLRAKLRQVNERG-EAIQTHRGLGYS 223 >gi|325262406|ref|ZP_08129143.1| DNA-binding response regulator [Clostridium sp. D5] gi|324032238|gb|EGB93516.1| DNA-binding response regulator [Clostridium sp. D5] Length = 272 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 101/233 (43%), Gaps = 30/233 (12%) Query: 14 GYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEKV------LELP-- 64 GY L DD L + LE + E R+ IEA I + EKV + +P Sbjct: 42 GYTILAADDEAEL--LDVLELYLERENIGIRKAKDGIEAMEIFRSEKVHLVLLDIMMPGL 99 Query: 65 ------RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 R IR S++P I ++ + + G DD + KP + E++AR+ A RR Sbjct: 100 DGYAVLRKIRETSRIPAIMLTAKSEDYDKILGLELGADDYITKPYNPLEVVARIKAQLRR 159 Query: 119 LKVSNNRAETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + R ETG +++ + + E+ G L E +IL M G+ Sbjct: 160 --NYDYREETGQNREVLRLRGLQLCVEEGNVELDGRAVELTSTEFKILRLFMGQPGRIFT 217 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 K QIF ++ E ++N V HIS LR KL G P + + + LGY I+ Sbjct: 218 KQQIFENVWEDSYEG-DDNTVMVHISNLRGKLEQSGGQPPQIKTVKGLGYKIE 269 >gi|323140625|ref|ZP_08075549.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp. YIT 12067] gi|322414889|gb|EFY05684.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp. YIT 12067] Length = 234 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 11/158 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R S +P+I ++ + + G DD + KP + RE++ARV A+ RR Sbjct: 65 IEVCKQVRKMSDLPIIMVTAKDDDDDRIAGLEIGADDYITKPFNSREVVARVKAVLRRAG 124 Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E I + D G +E +L L +N GK ++ Q+ Sbjct: 125 TQEKKGEVSRITYPGLIIDMDQYQVTAFGNKMTFTTKEMELLWCLASNPGKAFSRNQLLE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 I+G + + V++HI ++R+KL P DSK Sbjct: 185 TIWG-YSYYGDTRTVDTHIKRIRQKLNI-----PPDSK 216 >gi|310658906|ref|YP_003936627.1| DNA-binding response regulator in two-component system with yedv [Clostridium sticklandii DSM 519] gi|308825684|emb|CBH21722.1| DNA-binding response regulator in two-component system with YedV [Clostridium sticklandii] Length = 225 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 2/160 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ + + P++ ++ + + + G DD + KP +E+LAR+ A+ RR + Sbjct: 63 LSKLREKNCKAPILMLTAKSHVDDKVTGLELGADDYLTKPFEMKELLARIKALLRRPQNF 122 Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N + E G + + D + L ++E + +E L+ N + ++K I I+G + Sbjct: 123 NADILEFGDMYLNRDTCQIICNNQQVVLNKKEFQTMELLILNSKQILSKDLIMDKIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E NVV +IS LRKKL + S R LGY I+ Sbjct: 182 ESDAEINVVWVNISSLRKKLAKLDSKVTIASIRGLGYKIE 221 >gi|295110799|emb|CBL24752.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 221 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 3/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNR 125 I+ P+I +S S + SG DD + KP RE++ARV A+ R LK +N Sbjct: 66 IKNIITCPVIFLSAKSSEGAKVKGLMSGADDYITKPFSIRELVARVKVALRRNLKNGSNG 125 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + D ++ L + E RI + L+ N GK +K +++ +Y L D Sbjct: 126 ILINGLVFNQDSNSIKLDNGEILLTKNEFRICKILVQNSGKIFSKDELYEYLYDL-DANA 184 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + I +RKK + LG DP+ + +GY D Sbjct: 185 QLRTITEFIYSIRKKFKT-LGLDPIKTIWGIGYKWD 219 >gi|294340536|emb|CAZ88920.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As] Length = 225 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 12/140 (8%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------V 121 ++ S +P++ ++ +L+ + D G DD + KP E+LAR+ A+ RR + Sbjct: 68 QSGSNLPILILAARDALEDRVRGLDLGADDYLVKPFESAELLARIRAVARRQGGQAQPVL 127 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 SN E P+ R+ QG+ L RE +L L+ G ++++++ IYG + Sbjct: 128 SNGVLELDPV-----SREVRFQGQTQRLTAREYALLHALLLRPGAILSRSELEDRIYG-W 181 Query: 182 DEAVEENVVESHISKLRKKL 201 +E VE N VE I LRKKL Sbjct: 182 NEEVESNAVEFLIHSLRKKL 201 >gi|260584310|ref|ZP_05852057.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC 700633] gi|260157828|gb|EEW92897.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC 700633] Length = 238 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D I F E + + EE L + E+ + L+ + L Sbjct: 4 ILVVDDEKPISD--IVKFSLSKEGFEVVTAFDGEEGLAVFSAENPDLVILDLMLPKIEGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I ++ S + + G DD V KP +RE++ARV A RR + Sbjct: 62 EVCREIRKTSNVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQHI 121 Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S N G + + D +GE L RE +L YL + G+ + + Sbjct: 122 SPTEPDEEKSANEIVLGSLIIHEDAYVVSKRGEEIELTHREFELLHYLAKHIGQVITREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY I Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDTPSHPTWIMTRRGVGYYI 229 >gi|253988926|ref|YP_003040282.1| two-component response regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780376|emb|CAQ83537.1| two-component response regulator [Photorhabdus asymbiotica] Length = 222 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 79/161 (49%), Gaps = 3/161 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + +P++ ++ + + +SG DD + KP +E+ AR+ A+ RR Sbjct: 63 LVRLRKRGQNLPVLLLTAKADVADRVKGLNSGADDYLTKPFDLQELEARIRALLRRSAGI 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 T V+ D + GE L RE +L L RG+ V+K Q+F ++ L D Sbjct: 123 PQEILTFGSLVYQDEGYFTLNGEPLALTPRELSVLTTLFHRRGRPVSKQQLFEQVFALSD 182 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 EA ++ +E ++ ++RKKL G + + R LGY ++ Sbjct: 183 EANPQS-IELYVHRVRKKLSGS-GVG-ISTLRGLGYRLECQ 220 >gi|253573665|ref|ZP_04851008.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847193|gb|EES75198.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 226 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 4/162 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R +R + +PL+ ++ + + F+ G DD + KP E++ARV A+ +R +V Sbjct: 63 DLCRELRRYYDMPLLMLTAKGETRQVVKGFELGTDDYLVKPFEPAELVARVKALLKRYQV 122 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S ++ T G +R+ + E LP +E +L L + G+ + + Q+ I+G Sbjct: 123 SISQTVTIGALRMNRKTFEVESGESSITLPLKEFELLFKLGSYAGRTLTREQLIEEIWG- 181 Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 +D E ++ HI++LR++ GF + + R LGY ++ Sbjct: 182 YDFEGNERTLDVHINRLRERFPEETFGF-KIRTIRGLGYRLE 222 >gi|163940843|ref|YP_001645727.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863040|gb|ABY44099.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 228 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 66/148 (44%), Gaps = 7/148 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I ++ TL F+ G DD V KP +LAR + S Sbjct: 64 VCRRIRKKSNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIESRYSS 123 Query: 123 NNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 T I V R V GE + E IL Y M N+G +++ Q+ + Sbjct: 124 TINVSTADTLTSSGIHVHFPSRTVTVDGEDISMTHTEFEILTYFMQNQGIVISREQLITK 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204 I+G ++ A ++ V SHI LR KL K Sbjct: 184 IWG-YEFAGDDRTVNSHIRNLRHKLGGK 210 >gi|330445663|ref|ZP_08309315.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489854|dbj|GAA03812.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 224 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 3/148 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130 ++P++ ++ + Q + ++G DD + KP E++AR++A+ RR G Sbjct: 72 RLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSAGFVKPEMTAGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 IRV + VQ + L E +LEYLM + + V+K ++ +Y D+ + N + Sbjct: 132 IRVDLLAKQVYVQESLLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE--DQEGDPNTI 189 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E IS+LRKK +P+ + R GY Sbjct: 190 EVMISRLRKKFTKTGQDNPISTIRGQGY 217 >gi|313898465|ref|ZP_07832002.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312956847|gb|EFR38478.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 15/208 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++G + F +S + E+++++ R D++ ++ + Sbjct: 6 LVLDDEKEIADLVALYLNNEGYEVHKFYDSKDALEYMKNN-RVDLALLDVMMPEISG--F 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ RIIR P+I ++ + G DD + KP + E++ARV A RR K Sbjct: 63 EICRIIREKYMFPVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLRRYKK 122 Query: 122 SNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N E + F +D + EV L E IL YL NRG+ + ++F Sbjct: 123 YNPSQENVNVIDFKGLIIDNDSHRCTLYDEVLNLTPIEFSILWYLCKNRGRVITSEELFE 182 Query: 176 AIY--GLFDEAVEENVVESHISKLRKKL 201 A++ FD N V HI +LR+K+ Sbjct: 183 AVWKKKYFD---SNNTVMVHIRRLREKM 207 >gi|284053035|ref|ZP_06383245.1| two-component response regulator [Arthrospira platensis str. Paraca] gi|291566312|dbj|BAI88584.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 628 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 110/227 (48%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSA-IEAFLIGKGEK 59 +L++D + D +A+ ++ N + E++QSS+ + V IE L+ Sbjct: 3 ILLVEDDLHLADALVAMLTSQKYQVDVVNDGQQGWEYIQSSSYDLVLLDIELPLLDG--- 59 Query: 60 VLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + L +R+H+ QVP++ ++ + Q + D+G DD + KP+ E+ AR+ A+ RR Sbjct: 60 -ISLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRR 118 Query: 119 LKVSNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T V + D G+ + +E +LE LM +R + + +I + Sbjct: 119 SSEGTSSVFTYEKMVLDTSTCDVTYNGKPIKVTPKEYGLLELLMGDRQRTYSIDKILDKL 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDWN 223 + FD+ N V +HI LR+KL+ G + +++ LGY ++ N Sbjct: 179 WT-FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224 >gi|238917580|ref|YP_002931097.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] gi|238872940|gb|ACR72650.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] Length = 220 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 5/162 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IRA P++ ++ + ++ G DD ++KP E+ AR+ A RR Sbjct: 61 ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120 Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ R G + + + + + P + E I E+L NRG+ +K QI A++G Sbjct: 121 EHSVRMVLGRVCIQMSQKKLLMDDKELPFTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 FD ++ + +HI +R K + +D + K G W Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD---YDYMPIKTVWGIGYKW 218 >gi|166710916|ref|ZP_02242123.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 14/182 (7%) Query: 33 EFEEWLQSSAREDVSAIEAFL--------IGKGEKVLELPRIIRAHS---QVPLIGISDY 81 EFE ARE +AI L + G L+L R R ++P+I ++ Sbjct: 26 EFEPIHACDAREAQTAIADRLPDLILLDWMLPGTSGLDLARRWRKEQLTREIPIIMLTAR 85 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE 141 + ++GVDD V KP RE+LAR+ A+ RR + + R+ DG Sbjct: 86 GEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTREDDEDGSVAVGRLRIDGAAHR 145 Query: 142 VQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 V P+P E R+L + M + + +TQ+ ++G VEE ++ HI +LRK Sbjct: 146 VFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVWG-GSVYVEERTIDVHIRRLRK 204 Query: 200 KL 201 L Sbjct: 205 TL 206 >gi|150395862|ref|YP_001326329.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|150027377|gb|ABR59494.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 233 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 11/226 (4%) Query: 1 MFVLIDDRALVKDGYIA-LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59 M +LI + L Y+A F + G+ + + E ++ S DV ++ L + Sbjct: 5 MKILIVEDDLEAAAYLAKAFREAGIVCDHASDGEAGLFMASENAYDVLVVDRMLPRRDGL 64 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L + + R P++ +S + + +G DD + KP E+LARV + RR Sbjct: 65 SL-ITELRRKDIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRK 123 Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 G + + QG+ PL RE R+LEYLM N G+ V +T + + Sbjct: 124 GAPEQDMVYRVGDLELDRLSHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENV 183 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 + FD + NV++ H+S+LR K+ FDP + + R GY I Sbjct: 184 WDYHFDP--QTNVIDVHVSRLRSKIEKD--FDPPLLRTIRGAGYMI 225 >gi|88799721|ref|ZP_01115296.1| DNA-binding response regulator [Reinekea sp. MED297] gi|88777615|gb|EAR08815.1| DNA-binding response regulator [Reinekea sp. MED297] Length = 223 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 8/165 (4%) Query: 57 GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ L++ R RA + P++ ++ + +D +G DD + KP H E+LAR+ A+ Sbjct: 56 GKNGLDVLRHWRASGVETPVLVLTARDAWHERVDGLKAGADDYLGKPFHEEELLARMDAL 115 Query: 116 Y-RRLKVSNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR VS + +G + + SD + + G L E R+L Y M N ++KT++ Sbjct: 116 ARRRYGVSTDVITSGALTLNSDSQTVTDALGHQHQLTGVEFRLLRYFMMNPDVILSKTRL 175 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y D + NV+E +I++LR+ + G + +KR GY Sbjct: 176 SEHVYE-EDMLRDSNVIEVYINRLRQ----RFGKSTIVTKRGQGY 215 >gi|317489999|ref|ZP_07948491.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316910997|gb|EFV32614.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 226 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 9/134 (6%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--- 129 P++ ++ + L SG DD + KP E+LAR+ AI RR + R + G Sbjct: 72 TPVLMLTARSATADKLRGLRSGADDYLAKPFDRDELLARIEAILRR---TTGRRDVGIVA 128 Query: 130 --PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 + + + + + E L ++ ILEYL++++G ++K ++F I+G + Sbjct: 129 FKELALHTRTQQAFIADEPLALKGKQYDILEYLVSHQGSLISKERLFDKIWGFMSD-TSS 187 Query: 188 NVVESHISKLRKKL 201 NVVE ++S LRK L Sbjct: 188 NVVEVYVSALRKAL 201 >gi|309775541|ref|ZP_07670541.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium 3_1_53] gi|308916635|gb|EFP62375.1| DNA-binding response regulator PhoP [Erysipelotrichaceae bacterium 3_1_53] Length = 226 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 2/112 (1%) Query: 91 FDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ GVDD + KP RE+LARV A + R+ + R G + + R+ + + L Sbjct: 92 FEQGVDDYITKPFSPRELLARVNAHLKRQSRKQEKRLAVGDLSMDMKRREAYIGDHMMTL 151 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++E +LEY + N+ +++ I + I+G FD + +V+ H+ KLR KL Sbjct: 152 TKKEFDLLEYFIQNKDIVLSRDSILNDIWG-FDYDGDTRIVDVHVFKLRNKL 202 >gi|229032233|ref|ZP_04188206.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] gi|228729013|gb|EEL80016.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] Length = 239 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 12/139 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----------ETGPIRVFSDGRDPEVQ 143 G DD + KP RE++ARV AI RR K+ +++ + + Q Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVKDTSDEESITIAELKILPEFYEAYFQ 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202 G L +E +L YL N+ + + + Q+ SA++ +D A + +V+ HIS LR K+ + Sbjct: 156 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQ 214 Query: 203 NKLGFDPVDSKRFLGYSID 221 N + + R LGY ++ Sbjct: 215 NTKKPTYIKTIRGLGYKLE 233 >gi|163760210|ref|ZP_02167293.1| two component transcriptional regulator, winged helix family protein [Hoeflea phototrophica DFL-43] gi|162282609|gb|EDQ32897.1| two component transcriptional regulator, winged helix family protein [Hoeflea phototrophica DFL-43] Length = 222 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 110/231 (47%), Gaps = 22/231 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLI-GKGEK 59 ++L++D A + + + DG +++ +L E E++L ++A D+ ++ L G G + Sbjct: 3 YLLVEDNAELSEAVVKRLALDGHAVDHATNLGEAEDYL-AAASYDLILLDVMLPDGDGRE 61 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R+ H + P+I ++ + + D G DD + KP E+ AR A+ RR Sbjct: 62 FLARSRV---HLETPVIVLTARSQVSDRVGALDQGADDYITKPFDFSELEARCRAVLRRR 118 Query: 120 -KVSNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + N G + V G D L RE R+LE + G+ +K+ Sbjct: 119 GGAARNEIALGAVTFDLLSGVLRSGND------TLELRSREIRLLEIFARHPGQIKSKSL 172 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + ++ +D V EN +E ++ +LR+++ +G +++ R LGY ++ + Sbjct: 173 LMDRLFS-YDATVSENAIEVYVGRLRRRI-EAVGL-RIETVRGLGYRLEID 220 >gi|154504930|ref|ZP_02041668.1| hypothetical protein RUMGNA_02440 [Ruminococcus gnavus ATCC 29149] gi|167767735|ref|ZP_02439788.1| hypothetical protein CLOSS21_02270 [Clostridium sp. SS2/1] gi|153794813|gb|EDN77233.1| hypothetical protein RUMGNA_02440 [Ruminococcus gnavus ATCC 29149] gi|167710474|gb|EDS21053.1| hypothetical protein CLOSS21_02270 [Clostridium sp. SS2/1] gi|291558907|emb|CBL37707.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] Length = 221 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 22/173 (12%) Query: 63 LPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 LPR+ +R + P+I +S +QT +D G DD + KP E+LAR+ A Sbjct: 55 LPRLNGNDVLQRLRKFTNAPVIVVSAKTMVQTKIDLLKLGADDYMTKPFDLHELLARIEA 114 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGE-------VFPLPRRERRILEYLMANRGKR 167 +R SN + + RD E+ + P E +IL L+ K Sbjct: 115 NLKR--TSNTSCQNDTLTY----RDIEINNSLVYIKEVLVPFTSTELKILRLLLQYPQKI 168 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +K ++ +I+ A +++ + +HIS +RKK++ D + + +GY I Sbjct: 169 FSKQNLYESIWN-ETYAYDDDTINTHISHIRKKIKAITNEDYIQTIWGIGYKI 220 >gi|15600553|ref|NP_254047.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAO1] gi|116053507|ref|YP_793834.1| two-component response regulator PhoB [Pseudomonas aeruginosa UCBPP-PA14] gi|152987707|ref|YP_001351454.1| two-component response regulator PhoB [Pseudomonas aeruginosa PA7] gi|218894463|ref|YP_002443333.1| two-component response regulator PhoB [Pseudomonas aeruginosa LESB58] gi|254237949|ref|ZP_04931272.1| two-component response regulator PhoB [Pseudomonas aeruginosa C3719] gi|254243755|ref|ZP_04937077.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192] gi|296392220|ref|ZP_06881695.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAb1] gi|313106787|ref|ZP_07793002.1| two-component response regulator PhoB [Pseudomonas aeruginosa 39016] gi|12230950|sp|P23620|PHOB_PSEAE RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|9951681|gb|AAG08745.1|AE004948_1 two-component response regulator PhoB [Pseudomonas aeruginosa PAO1] gi|115588728|gb|ABJ14743.1| two-component response regulator PhoB [Pseudomonas aeruginosa UCBPP-PA14] gi|126169880|gb|EAZ55391.1| two-component response regulator PhoB [Pseudomonas aeruginosa C3719] gi|126197133|gb|EAZ61196.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192] gi|150962865|gb|ABR84890.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas aeruginosa PA7] gi|218774692|emb|CAW30509.1| two-component response regulator PhoB [Pseudomonas aeruginosa LESB58] gi|310879504|gb|EFQ38098.1| two-component response regulator PhoB [Pseudomonas aeruginosa 39016] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 101/213 (47%), Gaps = 24/213 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 +++DD A +++ IA+ + + G+ LE E Q+ A + D+ ++ L Sbjct: 6 ILIVDDEAPIRE-MIAV----ALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWML--P 58 Query: 57 GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ +P+I ++ + + G DD + KP RE++AR+ Sbjct: 59 GTSGIELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR ++ A PI V DP + G+ + E R+L++ M ++ + Sbjct: 119 AVLRRTGPGDSEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ ++G + VEE V+ HI +LRK L Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207 >gi|115526887|ref|YP_783798.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520834|gb|ABJ08818.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 221 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 98/188 (52%), Gaps = 8/188 (4%) Query: 35 EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDS 93 E W + ED +AI L G L + + R++ + +P++ ++ S +D D+ Sbjct: 35 EAWFRGDT-EDYAAIILDLGLPGMDGLTVLKRWRSNDRRIPVLILTARGSWAERVDGIDA 93 Query: 94 GVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152 G DD + KP E+LAR+ +I RR + +++ G I + + +G L Sbjct: 94 GADDYLPKPFRMEELLARLRSIVRRSVGQASSLIHVGEISIDERQMRVDRRGVPVNLSPL 153 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E R++ YL +RG+ V++ ++ IYG ++A + N +E I ++RKKL ++L +++ Sbjct: 154 EYRLVSYLALHRGRVVSQHELSENIYG-NEDAHDSNAIEVLIGRVRKKLGSEL----IET 208 Query: 213 KRFLGYSI 220 +R GY + Sbjct: 209 RRGFGYIV 216 >gi|210610878|ref|ZP_03288631.1| hypothetical protein CLONEX_00821 [Clostridium nexile DSM 1787] gi|210152273|gb|EEA83280.1| hypothetical protein CLONEX_00821 [Clostridium nexile DSM 1787] Length = 224 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 77/150 (51%), Gaps = 2/150 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLKVSNNRAETGPI 131 +P++ ++ + + D+G +D + KP H +E+LAR+ A+ R + ++++ + G Sbjct: 73 IPVLLLTAKSEVDDKVAGLDAGANDYLAKPFHSKELLARIRAMTRTQTAQADSKLQIGNG 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + F L +E ++LE +M+N ++ + I+G +D E NVV Sbjct: 133 TLDRATFELSTPAGSFRLANKEFQMLELMMSNPSHLISAERFMEKIWG-YDSEAEVNVVW 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +IS LRKKL + + R +GYS++ Sbjct: 192 VYISYLRKKLTALHANIQIKATRNVGYSLE 221 >gi|47569605|ref|ZP_00240282.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47553720|gb|EAL12094.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 224 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 5/162 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +RA P+I ++ S+ + DSG DD + KP E+LAR+ I+RR + Sbjct: 61 LEVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREE 120 Query: 121 VSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N+ + +++ + R E L +E +L M N + + + + + Sbjct: 121 HIENKHVSSLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNVNRVLTRDVLLNQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G +D VE N+V+ ++ LR KL + + + + R GY Sbjct: 181 VWG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGY 221 >gi|322377607|ref|ZP_08052097.1| nisin biosynthesis regulatory protein NisR [Streptococcus sp. M334] gi|321281372|gb|EFX58382.1| nisin biosynthesis regulatory protein NisR [Streptococcus sp. M334] Length = 228 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 80/145 (55%), Gaps = 4/145 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ ++IR VP+ I+ + + ++G DD + KP +E+LARV RR Sbjct: 60 LEICQMIREQITVPICFITAKDMDEDLVAGINAGADDYIMKPFSMQELLARVKMHLRREE 119 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +K + ++ + G + +++D ++ V + L RRE I+ +L +N K + +I++ + Sbjct: 120 RIKGNVHQIKIGKLILYTDSKELFVNDDKIALTRREFDIVNFLASNPSKIYSIEEIYNYL 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202 Y EA+ +V E +I ++R+KL+ Sbjct: 180 YPQSSEALLRSVSE-YIYQIRQKLK 203 >gi|291520902|emb|CBK79195.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 220 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 5/162 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IRA P++ ++ + ++ G DD ++KP E+ AR+ A RR Sbjct: 61 ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120 Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ R G + + + + + P + E I E+L NRG+ +K QI A++G Sbjct: 121 EHSVRMVLGRVCIQMSQKKLLMDDKELPFTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 FD ++ + +HI +R K + +D + K G W Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD---YDYMPIKTVWGIGYKW 218 >gi|288573784|ref|ZP_06392141.1| two component transcriptional regulator, winged helix family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569525|gb|EFC91082.1| two component transcriptional regulator, winged helix family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 222 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 89/168 (52%), Gaps = 17/168 (10%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LEL + +R +++P+I ++ + ++ ++ D+G DD + KP E+ AR+ A+ RR+ Sbjct: 62 LELLQKMRDGGNRLPVIILTAWDTVPNRINGLDNGADDYMVKPFELEELSARIRALARRV 121 Query: 120 KVSNNRAETGP-IRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R ++ P IR+ DP + G L E +L + N G +++ ++ Sbjct: 122 -----RGDSSPTIRIADLEIDPATKRVSKDGREVRLSHSEYVLLTTFVENVGIVLSRERL 176 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++YG +++ VE N ++ HI LR+ KLG D V + R GY +D Sbjct: 177 EASLYG-WEKDVESNAIQVHIHNLRE----KLGTDIVKNVRGFGYLMD 219 >gi|153938141|ref|YP_001391433.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152934037|gb|ABS39535.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] Length = 223 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 8/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + R IR S VP+I ++ S L + G DD + KP + +LAR+ I +R Sbjct: 63 ICREIRKTSDVPIIIVTSRDSEVDELISMNLGADDFITKPYNTEILLARITNILKRAYGN 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 LK +NN + + + L + E +IL YL+ NRG V + + ++ Sbjct: 123 LK-TNNTLNYKDFNLNLSNATVIYKDKSLELTKNEVKILSYLINNRGNIVKRDSLMEYLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 D V+++ + +I++LRKKL+ ++G +P++++R LGY Sbjct: 182 K-SDYFVDDSTLTVNINRLRKKLQ-EIGIENPIETRRGLGY 220 >gi|126668450|ref|ZP_01739406.1| DNA-binding response regulator [Marinobacter sp. ELB17] gi|126627067|gb|EAZ97708.1| DNA-binding response regulator [Marinobacter sp. ELB17] Length = 221 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + +DG +++ SL F E + ++ ++ ++ G Sbjct: 4 LLVEDTTGLGEAVQDQISEDGHAVDWVQSLAFAETSVKTTPYNLILLD-LMLPDGHGFDF 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ P+I ++ + + ++G DD + KP E+ ARVAA+ RR + + Sbjct: 63 LKKLRATGDTTPVIILTARDQVSDRITGLNAGADDYLVKPFDLSELSARVAAVARRYRGN 122 Query: 123 NNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N G + V R + G+ L RE + E + G +++ Q+ +Y F Sbjct: 123 PNPLVRVGDLEVDLADRRIDRNGQPVELTAREWALFEGFLQRPGILLSRAQLEDRLYE-F 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +E N +E +IS++RK KLG D + + R +GY ++ N Sbjct: 182 GAEIESNTIEVYISRMRK----KLGHDAIVTVRGMGYRLEPN 219 >gi|312863367|ref|ZP_07723605.1| putative response regulator ArlR [Streptococcus vestibularis F0396] gi|322516994|ref|ZP_08069883.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|311100903|gb|EFQ59108.1| putative response regulator ArlR [Streptococcus vestibularis F0396] gi|322124411|gb|EFX95908.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 224 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K N G +RV V + L Sbjct: 91 FELGADDYLTKPFYLEELKMRIQALLKRSGKFDQNTLSFGDVRVNLATNSTYVGDKEVEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + K+QIF ++G FD +VVE ++SK+RKKL+ Sbjct: 151 LGKEFDLLVYFLQNQNVILPKSQIFDRLWG-FDSDTTISVVEVYVSKIRKKLKGTDFATN 209 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 210 LQTLRSVGY 218 >gi|325983378|ref|YP_004295780.1| two component transcriptional regulator, winged helix family [Nitrosomonas sp. AL212] gi|325532897|gb|ADZ27618.1| two component transcriptional regulator, winged helix family [Nitrosomonas sp. AL212] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 84/166 (50%), Gaps = 10/166 (6%) Query: 61 LELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + L R +R SQ+ P++ ++ +L+ L F+ G DD + KP +E+ AR+ A+++R Sbjct: 60 MTLCRKLRQESQIDTPILMLTARDTLEDKLAGFEQGADDYLIKPFALKEVEARLLALHKR 119 Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 KV+N E + + + LP + R+L +M+ GK ++ ++ Sbjct: 120 HLGKVANRTLEFDKLTFDPKTLSIRFENKNVKLPPKCIRLLALMMSEPGKVFSREELEME 179 Query: 177 IYGLFDEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E V+E + + SH+ LR+ L G+DP+++ LGY + Sbjct: 180 AW----EDVQETSDTLRSHMHILRRALTKAGGYDPIETVHGLGYCL 221 >gi|169827613|ref|YP_001697771.1| putative sensory transduction protein [Lysinibacillus sphaericus C3-41] gi|168992101|gb|ACA39641.1| Hypothetical sensory transduction protein [Lysinibacillus sphaericus C3-41] Length = 220 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/220 (21%), Positives = 107/220 (48%), Gaps = 5/220 (2%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD A +++ ++G LE + + + L A E V + ++ L Sbjct: 1 MVDDDAHIRELVRVFLQNEG--LEVIEATDGVDALSKLASEKVDMVIMDIMMPNMDGWAL 58 Query: 64 PRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 IR+ H+ +P++ ++ + F G DD + KP E++ RV +I +R +++ Sbjct: 59 CEEIRSYHTDLPILMLTAKGETAQKVKGFHLGTDDYLVKPFEPAELIVRVKSILKRYRIA 118 Query: 123 NNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ E G +++ + ++ GE+ L +E +L L + GK ++ Q+ I+G + Sbjct: 119 LSQVVEVGNVKLNRHTHEVDLNGEIIVLRLKEFELLFTLASYVGKTFSREQLIEEIWG-Y 177 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E ++ HI ++R++ ++ + + R LGY ++ Sbjct: 178 DYEGDERTIDVHIKRIRERFPQEISGFVIRTLRGLGYRLE 217 >gi|219848013|ref|YP_002462446.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542272|gb|ACL24010.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 236 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 6/142 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120 RI+R S VP+I ++ + + G DD ++KP E LARV AI RR + Sbjct: 65 RILRQESDVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARVRAILRRSERQPH 124 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E G IRV + R G+ LP++E +L LM NRG + + + ++G Sbjct: 125 SIVREVLEAGSIRVDASSRRAWRDGQELNLPQKEFDLLTCLMRNRGIALTRDLLLERVWG 184 Query: 180 LFDEAVEENVVESHISKLRKKL 201 D + V+ HI LR+K+ Sbjct: 185 Q-DFIGDSRTVDVHIRWLREKI 205 >gi|33595492|ref|NP_883135.1| putative two-component system response regulator [Bordetella parapertussis 12822] gi|33599877|ref|NP_887437.1| putative two-component system response regulator [Bordetella bronchiseptica RB50] gi|33565570|emb|CAE40212.1| putative two-component system response regulator [Bordetella parapertussis] gi|33567474|emb|CAE31387.1| putative two-component system response regulator [Bordetella bronchiseptica RB50] Length = 236 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 86/166 (51%), Gaps = 6/166 (3%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL R+ R + +P++ ++ L L F G DD + KP E+ AR+ A+ Sbjct: 68 GHAVLHALRVER-RAALPVLMLTARDGLDDKLAGFAHGADDYLTKPFALAEVEARLLALI 126 Query: 117 RRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +R + V ++ GP++ S R+ V G+ L R+ I+E L+ + G+ V++ Q+ Sbjct: 127 QRSRGAVVDSLRSFGPLQFDSATREVAVHGKPVHLTRKCGMIVEVLLRDPGRVVSREQLE 186 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +A++G D+ + + S + LR+ L + GFD +++ G+ + Sbjct: 187 NALWG--DDPPSSDALRSQVHLLRRALADA-GFDGIETVHGTGWRL 229 >gi|15828139|ref|NP_302402.1| two-component response regulator [Mycobacterium leprae TN] gi|221230616|ref|YP_002504032.1| two-component response regulator [Mycobacterium leprae Br4923] gi|34098418|sp|Q50136|PRRA_MYCLE RecName: Full=Transcriptional regulatory protein prrA gi|2440114|emb|CAB16701.1| two-component regulator [Mycobacterium leprae] gi|13093693|emb|CAC31078.1| two-component response regulator [Mycobacterium leprae] gi|219933723|emb|CAR72220.1| two-component response regulator [Mycobacterium leprae Br4923] Length = 233 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 5/152 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET- 128 + VP+ +S S+ + ++G DD + KP E++ARV A+ RR + + +ET Sbjct: 78 NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETI 137 Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 GP+ V GR V G L +RE +L L ++ +++ Q+ ++G +D A + Sbjct: 138 AVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTTVLSRAQLLELVWG-YDFAAD 196 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 NVV+ I LR+KL G + + R +G+ Sbjct: 197 TNVVDVFIGYLRRKLEANSGPRLLHTVRGVGF 228 >gi|154245228|ref|YP_001416186.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159313|gb|ABS66529.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 225 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 8/149 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETG 129 P++ ++ + + + G DD + KP + E++ARV A+ RR L VS + G Sbjct: 74 PILVLTARDGAPSVIAGLNGGADDYMRKPFNVDELIARVRALLRRPGSALGVS---LKEG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + + R V G L R+E LE LM G ++K + +YG + E V N Sbjct: 131 NVELDTIARQARVDGVGLDLSRKEAAALELLMRRTGAVISKPALEETLYG-YGEEVSSNA 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VE I +LRKKL + + R +GY Sbjct: 190 VEVLIHRLRKKLAGAGAVVEIHTLRGIGY 218 >gi|332761097|gb|EGJ91384.1| transcriptional regulatory protein phoP [Shigella flexneri K-671] Length = 263 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 5/205 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ + ++ + D++ ++ L E L Sbjct: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGL--PDEDGLS 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R++ +P++ ++ S Q ++ +G DD V KP H E++AR+ A+ RR Sbjct: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ + EV L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKL 205 E E + ++ + +LRKK R+ + Sbjct: 181 DAELRESHTIDVLMGRLRKKFRHNI 205 >gi|300173705|ref|YP_003772871.1| two-component response regulator [Leuconostoc gasicomitatum LMG 18811] gi|299888084|emb|CBL92052.1| Two-component response regulator [Leuconostoc gasicomitatum LMG 18811] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 76/148 (51%), Gaps = 8/148 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R + P+I ++ S+ + D G DD + KP E+LAR+ ++ RR+ Sbjct: 61 LEVARRLRESKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIA 120 Query: 121 V---SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + SN++ + +R+ + R ++ L +RE +L L+ N ++ Q+ Sbjct: 121 IETESNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINIVQSREQL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G FD VE NVV+ +I LR K+ Sbjct: 181 LKEVWG-FDSEVETNVVDVYIRYLRNKI 207 >gi|296392538|ref|YP_003657422.1| PhoB family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296179685|gb|ADG96591.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 240 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ ++ P++ ++ SL+ L G DD V KP E++AR+ I RR S Sbjct: 76 LRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRAGKS 135 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E+ P VF D E EV+ PL E +L Y M N ++K QI Sbjct: 136 DGARES-PTLVFEDIELNEETHEVWKAGVLVPLSPTEFTLLRYFMVNARIVLSKRQILEH 194 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++ +D + NVVES++S LR+K+ Sbjct: 195 VWH-YDFGGDMNVVESYVSYLRRKI 218 >gi|227878289|ref|ZP_03996251.1| response regulator [Lactobacillus crispatus JV-V01] gi|256844179|ref|ZP_05549666.1| response regulator [Lactobacillus crispatus 125-2-CHN] gi|256850449|ref|ZP_05555876.1| response regulator [Lactobacillus crispatus MV-1A-US] gi|262047895|ref|ZP_06020842.1| response regulator [Lactobacillus crispatus MV-3A-US] gi|312976705|ref|ZP_07788454.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05] gi|227862120|gb|EEJ69677.1| response regulator [Lactobacillus crispatus JV-V01] gi|256614084|gb|EEU19286.1| response regulator [Lactobacillus crispatus 125-2-CHN] gi|256712654|gb|EEU27648.1| response regulator [Lactobacillus crispatus MV-1A-US] gi|260571802|gb|EEX28376.1| response regulator [Lactobacillus crispatus MV-3A-US] gi|310896033|gb|EFQ45098.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05] Length = 239 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 22/223 (9%) Query: 18 LFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP-------- 64 L +D S+ F LEFE++ A + A++ F K +L LP Sbjct: 9 LLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEKPTLILLDWMLPVYDGMTVL 68 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120 R IR S VP+I ++ S D G+DD + KP E+LAR+ + RRL+ Sbjct: 69 RRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRRLEKMRQ 128 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V + E GP+++ + E L +E ++ LM + K ++ ++ + Sbjct: 129 QNDVPDTSLEFGPLKIDLLKHEFYCDTEQIYLTPKEFALITELMRDPEKVKSRDELLDTV 188 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D + N V+ +I +R K+ N + + R LGY + Sbjct: 189 WG-YDFVGQTNTVDVYIRTIRNKIGNPYK-KIIKTMRGLGYCL 229 >gi|53716914|ref|YP_105697.1| DNA-binding response regulator IrlR [Burkholderia mallei ATCC 23344] gi|53722061|ref|YP_111046.1| transcriptional activator protein [Burkholderia pseudomallei K96243] gi|76818559|ref|YP_335189.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei 1710b] gi|121596825|ref|YP_989627.1| transcriptional activator IrlR [Burkholderia mallei SAVP1] gi|124381657|ref|YP_001024226.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10229] gi|126444012|ref|YP_001062520.1| transcriptional activator protein IrlR [Burkholderia pseudomallei 668] gi|126445741|ref|YP_001078366.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10247] gi|126456086|ref|YP_001075473.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106a] gi|134283471|ref|ZP_01770171.1| transcriptional activator IrlR [Burkholderia pseudomallei 305] gi|167003030|ref|ZP_02268820.1| transcriptional activator IrlR [Burkholderia mallei PRL-20] gi|167723508|ref|ZP_02406744.1| transcriptional activator IrlR [Burkholderia pseudomallei DM98] gi|167742474|ref|ZP_02415248.1| transcriptional activator IrlR [Burkholderia pseudomallei 14] gi|167819642|ref|ZP_02451322.1| transcriptional activator IrlR [Burkholderia pseudomallei 91] gi|167828025|ref|ZP_02459496.1| transcriptional activator IrlR [Burkholderia pseudomallei 9] gi|167849481|ref|ZP_02474989.1| transcriptional activator IrlR [Burkholderia pseudomallei B7210] gi|167898085|ref|ZP_02485487.1| transcriptional activator IrlR [Burkholderia pseudomallei 7894] gi|167906419|ref|ZP_02493624.1| transcriptional activator IrlR [Burkholderia pseudomallei NCTC 13177] gi|167914754|ref|ZP_02501845.1| transcriptional activator IrlR [Burkholderia pseudomallei 112] gi|167922645|ref|ZP_02509736.1| transcriptional activator IrlR [Burkholderia pseudomallei BCC215] gi|217419095|ref|ZP_03450602.1| transcriptional activator IrlR [Burkholderia pseudomallei 576] gi|226199348|ref|ZP_03794907.1| transcriptional activator IrlR [Burkholderia pseudomallei Pakistan 9] gi|237509707|ref|ZP_04522422.1| transcriptional activator protein IrlR [Burkholderia pseudomallei MSHR346] gi|238562934|ref|ZP_00439668.2| transcriptional activator protein IrlR [Burkholderia mallei GB8 horse 4] gi|242312627|ref|ZP_04811644.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106b] gi|254174272|ref|ZP_04880934.1| transcriptional activator IrlR [Burkholderia mallei ATCC 10399] gi|254183534|ref|ZP_04890126.1| transcriptional activator IrlR [Burkholderia pseudomallei 1655] gi|254190152|ref|ZP_04896661.1| transcriptional activator IrlR [Burkholderia pseudomallei Pasteur 52237] gi|254193175|ref|ZP_04899610.1| transcriptional activator IrlR [Burkholderia pseudomallei S13] gi|254200501|ref|ZP_04906866.1| transcriptional activator IrlR [Burkholderia mallei FMH] gi|254204526|ref|ZP_04910879.1| transcriptional activator IrlR [Burkholderia mallei JHU] gi|254263255|ref|ZP_04954120.1| transcriptional activator IrlR [Burkholderia pseudomallei 1710a] gi|254300419|ref|ZP_04967865.1| transcriptional activator IrlR [Burkholderia pseudomallei 406e] gi|254356844|ref|ZP_04973119.1| transcriptional activator IrlR [Burkholderia mallei 2002721280] gi|55977758|sp|O31395|IRLR_BURPS RecName: Full=Transcriptional activator protein irlR gi|52212475|emb|CAH38501.1| transcriptional activator protein [Burkholderia pseudomallei K96243] gi|52422884|gb|AAU46454.1| DNA-binding response regulator IrlR [Burkholderia mallei ATCC 23344] gi|76583032|gb|ABA52506.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei 1710b] gi|121224623|gb|ABM48154.1| transcriptional activator IrlR [Burkholderia mallei SAVP1] gi|124289677|gb|ABM98946.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10229] gi|126223503|gb|ABN87008.1| transcriptional activator protein IrlR [Burkholderia pseudomallei 668] gi|126229854|gb|ABN93267.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106a] gi|126238595|gb|ABO01707.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10247] gi|134245220|gb|EBA45314.1| transcriptional activator IrlR [Burkholderia pseudomallei 305] gi|147748113|gb|EDK55188.1| transcriptional activator IrlR [Burkholderia mallei FMH] gi|147754112|gb|EDK61176.1| transcriptional activator IrlR [Burkholderia mallei JHU] gi|148025871|gb|EDK83994.1| transcriptional activator IrlR [Burkholderia mallei 2002721280] gi|157809906|gb|EDO87076.1| transcriptional activator IrlR [Burkholderia pseudomallei 406e] gi|157937829|gb|EDO93499.1| transcriptional activator IrlR [Burkholderia pseudomallei Pasteur 52237] gi|160695318|gb|EDP85288.1| transcriptional activator IrlR [Burkholderia mallei ATCC 10399] gi|169649929|gb|EDS82622.1| transcriptional activator IrlR [Burkholderia pseudomallei S13] gi|184214067|gb|EDU11110.1| transcriptional activator IrlR [Burkholderia pseudomallei 1655] gi|217398399|gb|EEC38414.1| transcriptional activator IrlR [Burkholderia pseudomallei 576] gi|225928563|gb|EEH24591.1| transcriptional activator IrlR [Burkholderia pseudomallei Pakistan 9] gi|235001912|gb|EEP51336.1| transcriptional activator protein IrlR [Burkholderia pseudomallei MSHR346] gi|238521676|gb|EEP85126.1| transcriptional activator protein IrlR [Burkholderia mallei GB8 horse 4] gi|242135866|gb|EES22269.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106b] gi|243061379|gb|EES43565.1| transcriptional activator IrlR [Burkholderia mallei PRL-20] gi|254214257|gb|EET03642.1| transcriptional activator IrlR [Burkholderia pseudomallei 1710a] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 107/217 (49%), Gaps = 17/217 (7%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66 + L + G+IA + +DGV+ G + E EE+ D+ ++ L G G VLE R+ Sbjct: 18 KGLTEAGFIADWVEDGVT--GLHQAETEEY-------DLIILDVMLPGHDGWTVLE--RL 66 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 RAHS P++ ++ + + + G DD V KP E++ARV +I RR + + Sbjct: 67 RRAHS-TPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQARESTV 125 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 + + R QG+V L +E +L LM G+ + + I S ++ + F+ Sbjct: 126 LRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDMNFNS- 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVV++ I +LR K+ + + + R +GY ++ Sbjct: 185 -DTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220 >gi|163848409|ref|YP_001636453.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526334|ref|YP_002570805.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669698|gb|ABY36064.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222450213|gb|ACM54479.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 232 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 9/161 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120 RI+R S VP+I ++ + + G DD + KP E LARV AI RR + Sbjct: 65 RILRQESDVPIIMLTARQDEVDRIAGLELGADDYMGKPFSLGEFLARVRAILRRSERQPH 124 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E G IRV + R G+ LP++E +L LM NRG + + + ++G Sbjct: 125 SIVREVLEAGAIRVDTSSRRAWRNGQELNLPQKEFDLLTCLMRNRGIALTRDLLLERVWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGY 218 D + V+ HI LR+K+ G PV + R +GY Sbjct: 185 Q-DFIGDSRTVDVHIRWLREKIEPDPG-KPVYIQTVRGVGY 223 >gi|323704002|ref|ZP_08115625.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323531031|gb|EGB20947.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 230 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 106/227 (46%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD A ++D +G ++ + L + D+ ++ L G L Sbjct: 4 ILIIDDEAKIRDLVKVYLVKEGFEVQELSDGNEAVNLIKAEHYDLVLLDLML--PGVDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR SQVP+I ++ + + G DD + KP RE++ARV A+ RR+ Sbjct: 62 TICKEIRKFSQVPVIILTARGDEIDRVIGLEVGADDYIVKPFSPREMVARVKAVLRRMAP 121 Query: 122 SN-NRAETGPIRVFSDGR-DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + F D +PE V+G+ L RE +L +L + G+ ++ Q+ Sbjct: 122 GTVNLPQPERLLTFPDLEINPESRVVVVKGQEISLTPREFDLLLFLASFPGRAFSREQLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++G +D + V++HI++LR KL P+ + +GY + Sbjct: 182 TNVWG-YDYFGDLRTVDTHINRLRDKLSVNGARQPIATVWGVGYKFE 227 >gi|291541544|emb|CBL14654.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] Length = 226 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 3/141 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 L + IR +S VP++ I+ S L+ + G DD + KPI +V A+ +R K Sbjct: 66 LCKEIRRYSDVPIMFITARTSEADMLNGYALGCDDYIVKPIALPVFYEKVKALIKRSKGL 125 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V +N G + + + GE L +E IL+ L+ N+ V++ +I +A++ Sbjct: 126 VRHNLLTVGNVSLNPNNGVVVSDGEEVTLTAKEYAILKILLENKNSVVSREKIITAVWH- 184 Query: 181 FDEAVEENVVESHISKLRKKL 201 +D ++E V+++HI +RK L Sbjct: 185 YDTMIDERVLDTHIKNIRKAL 205 >gi|237715036|ref|ZP_04545517.1| two-component system response regulator [Bacteroides sp. D1] gi|262409016|ref|ZP_06085561.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_22] gi|294645619|ref|ZP_06723312.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294809922|ref|ZP_06768596.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229444869|gb|EEO50660.1| two-component system response regulator [Bacteroides sp. D1] gi|262353227|gb|EEZ02322.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_22] gi|292639064|gb|EFF57389.1| response regulator receiver domain protein [Bacteroides ovatus SD CC 2a] gi|294442768|gb|EFG11561.1| response regulator receiver domain protein [Bacteroides xylanisolvens SD CC 1b] gi|295087844|emb|CBK69367.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacteroides xylanisolvens XB1A] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 24/195 (12%) Query: 21 DDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------KGEKVLELPRIIRAHSQVP 74 ++G ++ NS E + + D+S+ L+ G K+ + + + ++VP Sbjct: 25 NEGYEVDTANSAE------EAMKMDISSYHLILLDVMMGEISGFKMANILKKDKKTAKVP 78 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134 +I I+ + T+ F+ G DD ++KP RE++ARV A+ RR E P R+ Sbjct: 79 IIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRR--TVTTETERAPERLT 136 Query: 135 SDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VE 186 + + E PL ++E IL L+ N+G+ ++ I + I+ DE V Sbjct: 137 YQSLVIDITKKKVSIDDEEVPLTKKEFEILLLLVQNKGRVFSREDILARIWS--DEVYVL 194 Query: 187 ENVVESHISKLRKKL 201 + ++ +I++LRKK+ Sbjct: 195 DRTIDVNITRLRKKI 209 >gi|229134011|ref|ZP_04262831.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228649346|gb|EEL05361.1| Two-component response regulator [Bacillus cereus BDRD-ST196] Length = 228 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 66/148 (44%), Gaps = 7/148 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I ++ TL F+ G DD V KP +LAR + S Sbjct: 64 VCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYSS 123 Query: 123 NNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 T I V R V GE + E IL Y M N+G +++ Q+ + Sbjct: 124 TVNVSTADTLTSSGIHVHFPSRTVTVDGEGISMTHTEFEILTYFMQNQGIVISREQLITK 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204 I+G ++ A ++ V SHI LR KL K Sbjct: 184 IWG-YEFAGDDRTVNSHIRNLRHKLGQK 210 >gi|227537811|ref|ZP_03967860.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227242425|gb|EEI92440.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 232 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 13/199 (6%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 +L++ G L + V+L G LE + S D+ ++ L G L + R IR Sbjct: 14 SLIRRGLSELNFNISVALNGLTGLE----MAVSGSYDLIILDVML--PGMDGLRVCRNIR 67 Query: 69 AHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS----- 122 + VP++ +S + +D F S DD + KP + E+ ARV+ R++ + Sbjct: 68 QQKKNVPILILSALDQPEDIVDGFKSDADDYLTKPFNMEELKARVSRFSRKIGQTSKVEE 127 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N+ E + + + + Q L E R+LE+LM N+ + V++ I +++G+ D Sbjct: 128 NSNLEFADLTLDYSSKIAKRQDVDIALTATEFRLLEFLMKNQKRVVSRIDILESVWGM-D 186 Query: 183 EAVEENVVESHISKLRKKL 201 + NVV+ +I+ LR K+ Sbjct: 187 FNLSTNVVDVYINYLRNKI 205 >gi|183599453|ref|ZP_02960946.1| hypothetical protein PROSTU_02932 [Providencia stuartii ATCC 25827] gi|188021700|gb|EDU59740.1| hypothetical protein PROSTU_02932 [Providencia stuartii ATCC 25827] Length = 224 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 2/152 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P++ ++ S Q + +SG DD V KP H E++AR+ A+ RR +++ E Sbjct: 73 IPVLVLTARESWQEKVQALNSGADDYVTKPFHLEELVARMQALMRRNSGLASQVLELDGF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + ++ V GE L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 133 VIDLSRKEFTVNGEPVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLYP-DAELRESHTID 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + +LRKK++ D + + R GY D N Sbjct: 192 VLMGRLRKKIQQFHANDVIVTVRGQGYRFDVN 223 >gi|158320763|ref|YP_001513270.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140962|gb|ABW19274.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/205 (24%), Positives = 99/205 (48%), Gaps = 8/205 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD L+ G DG + + + EE L+ + + I L+ L Sbjct: 5 ILIVDDEPLLVKGLKYSLEQDGYEI--LTAFDGEEALEKAKIANADLILLDLMLPKIDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR +SQ P+I ++ + + + G DD + KP + E+ AR+ A+ RR + Sbjct: 63 QVCQQIRLNSQTPIIMLTAKGEDMSKILGLEYGADDYLTKPFNILELKARIKAVLRRYQS 122 Query: 122 SNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S+ E I ++ + GR ++GE L +E +L L +N GK ++ ++ Sbjct: 123 SDKPIEERVIKIDDFKINTLGRKVSLKGEEVNLTAKEFDLLLLLASNPGKIYSREELLEI 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 I+G ++ + V+ HI +LR+K+ Sbjct: 183 IWG-YEYFGDLRTVDVHIRRLREKI 206 >gi|114561426|ref|YP_748939.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114332719|gb|ABI70101.1| transcriptional regulator [Shewanella frigidimarina NCIMB 400] Length = 224 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 69/129 (53%), Gaps = 5/129 (3%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF---SDGRDPEVQGEVFPL 149 +G DD ++KP E+ AR+ + RR ++ N + +T + F ++ + G L Sbjct: 93 AGADDYLSKPFSFDELQARLLCLGRRGEL-NQQVKTICVANFVLDTNNKSLHADGHYIDL 151 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 + E +I+EYL +N + + QI A+ G F+ + +N +E+H+S +RKK + P Sbjct: 152 TKNEFKIVEYLFSNPKQVLNPEQISEAVVGSFNH-LSKNTIEAHLSSVRKKAKAVGVTLP 210 Query: 210 VDSKRFLGY 218 + +KR GY Sbjct: 211 IKNKRGFGY 219 >gi|322388231|ref|ZP_08061835.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321140903|gb|EFX36404.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 227 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/220 (20%), Positives = 100/220 (45%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D L++D + L G ++ +F++ Q + D I L GE Sbjct: 4 ILVIEDETLIRDEIVILLEKAGYQVDKLT--DFKDTSQQVLQYDTDLIILDLNLPGETGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +++ VP++ ++ L+ + G D+ + KP LAR+ I +R + Sbjct: 62 QICKNLKSKRSVPILVLTSREQLKDEIYALKLGADEYLTKPFKKERFLARIENILKRYEG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N E + + + G LP+ + ++LE L+ V K ++ ++ Sbjct: 122 RQNLLEKDNFLLDRNTYTLYINGHSILLPQNQGKLLETLLVTTDSVVTKEELSMKLWN-T 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++EN ++ +I++L+K ++ V S R +GY ++ Sbjct: 181 TEFIDENALQVNIARLKKVMKQAGIALKVKSVRGIGYKLE 220 >gi|313885587|ref|ZP_07819337.1| transcriptional regulatory protein WalR [Eremococcus coleocola ACS-139-V-Col8] gi|312619317|gb|EFR30756.1| transcriptional regulatory protein WalR [Eremococcus coleocola ACS-139-V-Col8] Length = 234 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++G + + + EE L+ +E+ + L+ + L Sbjct: 4 ILVVDDEKPISDIITYTLKNEGYDI--VTAFDGEEALEQFEKENPDLVLLDLMLPKKTGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 E+ R IR S VP+I ++ S + + G DD V KP +RE+ ARV A RR Sbjct: 62 EVCREIRKDSAVPIIMLTAKDSEIDKVVGLELGADDYVTKPFSNRELAARVKASLRRNAL 121 Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 V+++ +ET G + V + +G+ L RE +L YL + G+ + + + Sbjct: 122 VTSDTSETESSDIVIGDLVVHQEAYIASKRGQEIELTHREFELLHYLAKHIGQVMTREHL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 ++G +D + V+ I +LR+K+ ++ + ++R +GY Sbjct: 182 LETVWG-YDYFGDVRTVDVTIRRLREKIEDQPSHPSYIVTRRGVGY 226 >gi|168183809|ref|ZP_02618473.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237795567|ref|YP_002863119.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182673082|gb|EDT85043.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229264158|gb|ACQ55191.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 223 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 8/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + R IR S VP+I ++ S L + G DD + KP + +LAR+ I +R Sbjct: 63 ICREIRKTSDVPIIIVTSRDSEVDELISMNLGADDFITKPYNTEILLARITNILKRAYGN 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 LK +NN + + + L + E +IL YL+ NRG V + + ++ Sbjct: 123 LK-TNNTLNYKDFNLNLSNATVIYKDKSLELTKNEVKILSYLINNRGNIVKRDSLMEHLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 D V+++ + +I++LRKKL+ ++G +P++++R LGY Sbjct: 182 K-SDYFVDDSTLTVNINRLRKKLQ-EIGIENPIETRRGLGY 220 >gi|164688051|ref|ZP_02212079.1| hypothetical protein CLOBAR_01696 [Clostridium bartlettii DSM 16795] gi|164602464|gb|EDQ95929.1| hypothetical protein CLOBAR_01696 [Clostridium bartlettii DSM 16795] Length = 232 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 19/163 (11%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ + IR QV +I ++ + L+ F SG DD + KP +E+L RVAA+ RR+ Sbjct: 63 IEVCKYIRQKFDQVGIIMLTAKAQEEDKLEGFISGADDYIVKPFSIKELLVRVAALLRRV 122 Query: 120 K-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K + N+ + P + D R G+ L E I++YLM N + +++ QI Sbjct: 123 KKEESSMKLNKIVSDPFELDLDKRKLFKNGKEIELTPTEFSIVKYLMVNAKQSLSRDQIL 182 Query: 175 SAIYG---LFD-EAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 + ++G L+D + V+ N+ +++RNK+ DP K Sbjct: 183 TEVWGNNYLYDFKIVDVNI---------RRIRNKIEDDPSKPK 216 >gi|138896293|ref|YP_001126746.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196249915|ref|ZP_03148610.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267806|gb|ABO68001.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196210429|gb|EDY05193.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 234 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 10/139 (7%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE------TGPIRVFSDGRDPEVQG 144 + G DD + KP RE++ARV AI RR ++ AE G + +F + + V Sbjct: 93 LELGADDYMTKPFSPREVVARVKAILRRTDLAQPAAEPSERLVIGDLEIFPERYEAAVGD 152 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 + L +E +L +L ++G+ + + Q+ SA++ +D A + +V+ HIS LR+K+ Sbjct: 153 KPLELTPKEFELLLHLARHKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLREKIEED 211 Query: 205 LGFDPVDSK--RFLGYSID 221 PV K R LGY ++ Sbjct: 212 TK-KPVYIKTVRGLGYKLE 229 >gi|187477032|ref|YP_785056.1| two-component system response regulator [Bordetella avium 197N] gi|115421618|emb|CAJ48128.1| two-component system response regulator [Bordetella avium 197N] Length = 228 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 79/150 (52%), Gaps = 5/150 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGP 130 VP++ ++ L L F G DD + KP E+ AR+ A+ +R + V + GP Sbjct: 78 VPVLILTARDGLDDKLAGFSHGADDYLTKPFALAEVKARLLALIQRSRHAVVDAVYRFGP 137 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + S R+ V G+ L R+ I+E L+ + GK V++ + +A++G DE + + Sbjct: 138 LAMDSRSREVSVNGKPVHLARKSVLIVEMLLRDPGKVVSRETLEAALWG--DEPPASDAL 195 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 S + LR+ L ++ GFD +++ +G+ + Sbjct: 196 RSQVHLLRRAL-SEAGFDGIETTHGIGWRL 224 >gi|110806919|ref|YP_690439.1| DNA-binding transcriptional regulator QseB [Shigella flexneri 5 str. 8401] gi|110616467|gb|ABF05134.1| QseB [Shigella flexneri 5 str. 8401] gi|332752697|gb|EGJ83082.1| transcriptional regulatory protein qseB [Shigella flexneri K-671] Length = 210 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 6/148 (4%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132 P++ ++ +L ++ G DD + KP E+ AR+ A+ RR ++N G + Sbjct: 65 PVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVM 124 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + R + GE L +E +LE LM N G+ + + I +Y +DE V N VE Sbjct: 125 LDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY-TWDEEVTSNAVEV 183 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220 H+ LR+ KLG D + + +GY++ Sbjct: 184 HVHHLRR----KLGSDFIRTVHGIGYTL 207 >gi|331002009|ref|ZP_08325529.1| hypothetical protein HMPREF0491_00391 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411805|gb|EGG91210.1| hypothetical protein HMPREF0491_00391 [Lachnospiraceae oral taxon 107 str. F0167] Length = 225 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 93/185 (50%), Gaps = 6/185 (3%) Query: 22 DGVSLEGFNSLEFEEWLQS----SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIG 77 D ++++GF LE ++ Q+ +D+ I ++ E ++R +S+VP+I Sbjct: 21 DFLTIKGFIVLEAQDGEQALKVFDENKDIKLILLDVMMPKLDGFETLEVLRQYSKVPVIM 80 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSD 136 ++ + L + GVD+ + KP + ++ARV A+ RR + S + G I + Sbjct: 81 LTARSEERDELLGYKLGVDEYITKPFSPKILVARVEAVLRRTIGESEEKLVAGAIEIDKV 140 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 R + + L +E +L Y + N+G +++ +I S+++ +D + +++H+ K Sbjct: 141 ARSVYIDQKPVDLSFKEYELLTYFIENKGIALSREKILSSVWN-YDYFGDARTIDTHVKK 199 Query: 197 LRKKL 201 LR K+ Sbjct: 200 LRAKM 204 >gi|327441643|dbj|BAK18008.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 228 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 16/165 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA +P+I +S + G DD + KP H E++ARV + RR Sbjct: 69 IRAERNIPIIMLSAKAEQSDKIHGLSVGADDYITKPFHPLELMARVKSQLRRYVNFGTAG 128 Query: 127 ETGP----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 E P + + + R+ V GE L E +I E L+ N G+ + + I+ ++ + Sbjct: 129 EAAPLVEGLELDAAAREIRVDGEPVKLTPTEYKITELLLKNAGRVYSISDIYELVWN--E 186 Query: 183 EAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221 A EN+V HI K+R+K+ DP + + LGY I+ Sbjct: 187 PAYNAENIVAVHIRKIREKIE----ADPKNPRYLKVVWGLGYKIE 227 >gi|320335876|ref|YP_004172587.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319757165|gb|ADV68922.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 221 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 5/155 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R +S VP+I ++ ++ + G DD V KP H E+LAR+ R + + Sbjct: 69 LRKNSTVPVIVLTARDTVDEKVRLLSLGADDYVIKPFHPDELLARIKVQLR--QRGSETL 126 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GLFDEAV 185 G +++ R QGE L +E IL LM G+ ++ +I I+ G E Sbjct: 127 TLGDLQLDPQKRLVLFQGEELRLSPKEFDILALLMRQPGRVYSRQEIGQEIWQGRLPEG- 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVV+ H++ LR KLR+ G+ + + R +GY++ Sbjct: 186 -SNVVDVHMANLRAKLRDLEGYGLLRTVRGVGYAL 219 >gi|307825418|ref|ZP_07655637.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307733593|gb|EFO04451.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 224 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 97/202 (48%), Gaps = 5/202 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D A++ DG G S+ + + + L + D+ ++ L L Sbjct: 3 ILLIEDDAVLADGLTHTLSGSGYSVTSATTGGYADQLLQAQGFDLIVLDLGL--PDMDGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R +R+ +P++ ++ + ++ + G DD + KP RE+ ARV A+ RR Sbjct: 61 ELLRKLRSRKIPLPILILTARDGVNDRINGIEQGADDYMTKPFELRELEARVHALIRRCY 120 Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N G + + + V G+ L RE +LE L+ GK V+K +I + Sbjct: 121 GGFSNDIVIGRLALDTHNHQVLVDGQTINLSAREYGVLEILLIQAGKVVSKDRIAQRL-A 179 Query: 180 LFDEAVEENVVESHISKLRKKL 201 + +A+ +N VE ++ +LRK++ Sbjct: 180 VDGDALTDNAVEIYVHRLRKRI 201 >gi|237710556|ref|ZP_04541037.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|229455278|gb|EEO60999.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] Length = 225 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 4/150 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G +LE ++ + H + +I +S S++ + D G DD + KP H E+ AR+ + Sbjct: 57 GSGLDLLE--KLKKMHKRENVIILSAKDSIEDKVLGLDLGADDYLPKPFHLVELNARIKS 114 Query: 115 IYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR + N + G I +F D V G+ L R+E IL Y M G+ V K + Sbjct: 115 VIRRHQQGGKNSIKYGNIEIFPDKYGVTVAGKKIELNRKEYDILVYFMNRPGRLVNKNTL 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLR 202 +++G D+ + + + I LRK+L+ Sbjct: 175 AESVWGDHIDQVDNFDFIYAQIKNLRKRLK 204 >gi|209543504|ref|YP_002275733.1| winged helix family two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209531181|gb|ACI51118.1| two component transcriptional regulator, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 234 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 16/196 (8%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRII 67 L +DG + +G +G ++ W DV ++ L G G +L+ R+ Sbjct: 26 GLARDGIGVTWVANGT--DGLSAALGRHW-------DVIVLDRMLPGLDGMAILK--RVR 74 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 ++P++ ++ + + + G DD + KP RE+ ARVA + RR+ ++ + Sbjct: 75 EVGIRIPVLFLTTMDGVNSRVGGLRGGADDYLVKPFAVRELAARVAVLLRRMGLARDATV 134 Query: 128 TGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + D EV GE L +E RILEY M N G +++ + A D V Sbjct: 135 LRAAGITLDLLTREVTRHGEKLFLQPQEVRILEYFMRNPGTILSRRMLLHAWN--VDFPV 192 Query: 186 EENVVESHISKLRKKL 201 N+VE+H+S+LR KL Sbjct: 193 HTNLVETHLSRLRDKL 208 >gi|302544103|ref|ZP_07296445.1| DNA-binding response regulator TrcR [Streptomyces hygroscopicus ATCC 53653] gi|302461721|gb|EFL24814.1| DNA-binding response regulator TrcR [Streptomyces himastatinicus ATCC 53653] Length = 290 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 8/163 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ R +VP++ ++ +++ + +G DD V KP E++AR+ + RR + Sbjct: 127 LGRLRRELPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSGAA 186 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R+E+ G + + D + G+ L E +L YLM N + ++K QI ++ Sbjct: 187 AARSESVLAVGDLVLDEDSHEVSRAGQEIHLTATEFELLRYLMRNPRRVLSKAQILDRVW 246 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +D + NVVE +IS LR+K+ G P + ++R GY I Sbjct: 247 S-YDFGGQANVVELYISYLRRKI--DAGRSPMIHTRRGAGYLI 286 >gi|300854762|ref|YP_003779746.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300434877|gb|ADK14644.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 226 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 86/166 (51%), Gaps = 5/166 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR S VP+I ++ + + D+G +D ++KP E+LAR+ +Y R K Sbjct: 63 IEVCRRIRQFSHVPIIMLTAKSDIPDKVLGLDAGANDYLSKPFAIEELLARI-RVYERDK 121 Query: 121 VSNNRAETGPIR-VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N+ + ++ + D + +V G+ L + E +L+ L+ N+ + + ++ + Sbjct: 122 ALKNQTDQIKVKNIVMDNKTHQVLRDGKEIELTKTEYNLLKMLLINKNIVLTRDKLIEEV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G +D + + NVV+ I LR K+ N+ + + R +GY I N Sbjct: 182 WG-YDYSGDTNVVDVFIRYLRSKIDNERQDKLITTIRGVGYVIKDN 226 >gi|317152805|ref|YP_004120853.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316943056|gb|ADU62107.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 232 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 90/185 (48%), Gaps = 17/185 (9%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 DV ++ L G+G LE+ R++R P+I IS S++ + D+G DD + KP Sbjct: 46 DVVLLDLTLPGRGG--LEVLRMLRRRGINAPVILISGSDSVEDKVAGLDAGADDYIVKPF 103 Query: 104 HHREILARVAAIYRR-------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156 E+LAR+ + RR L + A R+ + G G L RE + Sbjct: 104 AFPEVLARIRVVLRRGWADQVLLLRCGDLAMDLITRIVTRG------GRTIALTAREFEL 157 Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRF 215 LEYL+ + G+ V + + I+ A +NV++ HI+++RKKL + + ++R Sbjct: 158 LEYLLRHPGRVVTRDMLARDIWQEDTRATNLDNVIDVHIARIRKKLDHGHERKLLHTQRG 217 Query: 216 LGYSI 220 +G+ + Sbjct: 218 VGFQL 222 >gi|119484322|ref|ZP_01618939.1| OmpR subfamily protein [Lyngbya sp. PCC 8106] gi|119457796|gb|EAW38919.1| OmpR subfamily protein [Lyngbya sp. PCC 8106] Length = 234 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 21/220 (9%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + LV + Y+ + DG + ++L+S + AI +L+ G LEL + + Sbjct: 18 QVLVSEKYVVDWVIDGT--------QAWDYLESQWTDYTVAIFDWLL-PGLSGLELCQRL 68 Query: 68 RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R H +P++ ++ + + D+G DD + KP E+LAR+ A+ RR + Sbjct: 69 RVHQNPLPILMLTALGQSENRVKGLDAGADDYLVKPFVMEELLARLRALQRRSPQLQPPS 128 Query: 127 ETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 T I FS + EV V PL +E +IL YLM NR + + ++I ++ Sbjct: 129 LT--IGTFSLDYANNALCVKGSEVSPTVIPLTIKEFQILAYLMQNRDRIIPGSKIRHQLW 186 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 F+E NVV + + LR+KL + P+++ GY Sbjct: 187 D-FNEEPISNVVAAQMRLLRRKLASYGCDCPIETIPGQGY 225 >gi|99034436|ref|ZP_01314439.1| hypothetical protein Wendoof_01000759 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 156 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 1/106 (0%) Query: 97 DVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERR 155 D + KP H E+LAR+ AI RR K + G I + D R EV+G+ L +E Sbjct: 1 DYLTKPFHKSELLARIKAIVRRTKGHPESVIKIGNININFDHRVVEVKGKTVHLTNKEYS 60 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++E L +G + K + +Y DE + +V+ + KLRKKL Sbjct: 61 MIELLALRKGTVLTKEMFLNHLYNGLDEPSDNKIVDVFMCKLRKKL 106 >gi|295090361|emb|CBK76468.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 13/196 (6%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIR 68 L+K+GY +DG + L + D++ ++ L + G +++ R R Sbjct: 21 LMKNGYSVDCCNDG-------EIAMLYALNTDYGYDLAIVDRMLPVIDGLTIIKAMR--R 71 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127 + Q+P+I I+ +L +D D G DD + KP H RE++ARV A+ RR ++ A Sbjct: 72 KNIQIPVIIITGMSALDDRVDGLDGGADDYLVKPFHIRELMARVRALTRRPQQIQETEAL 131 Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + + + R G+ L RE +L LM ++ Q+ ++G + +E Sbjct: 132 SYADLHLDYPNRKIVCNGQDLVLTAREAELLSVLMKQPKTAFSREQLVLKVWG-SNADIE 190 Query: 187 ENVVESHISKLRKKLR 202 V+++IS LRK+LR Sbjct: 191 PGNVDNYISFLRKRLR 206 >gi|94309410|ref|YP_582620.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353262|gb|ABF07351.1| DNA-binding response regulator in two-component regulatory system with Rmet_0464 [Cupriavidus metallidurans CH34] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ + +RA S VP++ ++ S+ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLKRLRARSAMVPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRG 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+ GR + ++ L RE +LE L+ G+ V+K Q+ + Sbjct: 120 AGGGATLMRHGPLAFDQVGRIAYLNEQMLDLSAREVGLLEILLTRSGRLVSKEQLVDHLC 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E ++ +LRKK+ ++G + + R LGY ++ Sbjct: 180 E-WGEEVSNNAIEVYVHRLRKKI--EVGGIRIATVRGLGYCLE 219 >gi|300787588|ref|YP_003767879.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797102|gb|ADJ47477.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 228 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 95/202 (47%), Gaps = 6/202 (2%) Query: 2 FVLIDDRALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L++D A++ + +AL +D L + + L+S++ V + L+ G Sbjct: 7 VLLVEDDAMISEALSLALTDEDFDVLAAATGEDGLDLLESTS---VDVVLLDLMLPGIDG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +R H +P+I I+ + ++G DD V KP+ E+ AR+ A+ RR Sbjct: 64 LTVCRRVREHGDLPIIVITARTDTHDVIAGLEAGADDYVTKPLVAGELAARIRALLRRTA 123 Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R G + + D G L R E R+L L A GK V + Q+ ++G Sbjct: 124 SARPARFSVGRLEIRPDEEAVHRDGVPVHLTRTEFRLLTELAAAEGKVVTREQLLQRVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKL 201 D + +++ HI +LR+K+ Sbjct: 184 -HDYFGDTRLLDVHIRRLRRKV 204 >gi|212695008|ref|ZP_03303136.1| hypothetical protein BACDOR_04546 [Bacteroides dorei DSM 17855] gi|237727052|ref|ZP_04557533.1| two-component system response regulator [Bacteroides sp. D4] gi|265750332|ref|ZP_06086395.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] gi|212662324|gb|EEB22898.1| hypothetical protein BACDOR_04546 [Bacteroides dorei DSM 17855] gi|229433908|gb|EEO43985.1| two-component system response regulator [Bacteroides dorei 5_1_36/D4] gi|263237228|gb|EEZ22678.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] Length = 225 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 4/150 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G +LE ++ + H + +I +S S++ + D G DD + KP H E+ AR+ + Sbjct: 57 GSGLDLLE--KLKKMHKRENVIILSAKDSIEDKVLGLDLGADDYLPKPFHLVELNARIKS 114 Query: 115 IYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR + N + G I +F D V G+ L R+E IL Y M G+ V K + Sbjct: 115 VIRRHQQGGENSIKYGNIEIFPDKYGVTVAGKKIELNRKEYDILVYFMNRPGRLVNKNTL 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLR 202 +++G D+ + + + I LRK+L+ Sbjct: 175 AESVWGDHIDQVDNFDFIYAQIKNLRKRLK 204 >gi|152991573|ref|YP_001357295.1| two-component response regulator [Nitratiruptor sp. SB155-2] gi|151423434|dbj|BAF70938.1| two-component response regulator [Nitratiruptor sp. SB155-2] Length = 218 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 10/162 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + + ++VP I I+ + F+ G D + KP +E+ R+ + +R Sbjct: 63 LKELRESGNEVPAIFITSLTHVDDLSKGFELGCCDYIKKPFDLKELEVRLKNVLKRECFG 122 Query: 123 NNRAETG-PIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N+ P D E++ GEV L ++E+RILE L+ RG V+ Q ++G Sbjct: 123 ANKEMVELPNNYTYDLERFELRQNGEVVSLTKQEKRILELLIKQRGSIVSIEQFCDEVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E V+ + HI+KLRK K+G D + + LGY ID Sbjct: 183 ---EYVDPANIRVHITKLRK----KIGKDIIKNVHGLGYKID 217 >gi|150021704|ref|YP_001307058.1| two component transcriptional regulator [Thermosipho melanesiensis BI429] gi|149794225|gb|ABR31673.1| two component transcriptional regulator, winged helix family [Thermosipho melanesiensis BI429] Length = 239 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 94/200 (47%), Gaps = 18/200 (9%) Query: 27 EGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA---HSQVPLIGISD 80 EG++ + + E+ L+ +DV ++ G E R IR+ H P+I +S Sbjct: 26 EGYDVIPVEDAEKALEELKDKDVDMFLVDIMLPGIDGFEFVRHIRSLEQHKLTPVIFLSA 85 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS----- 135 + + G DD + KP RE+LAR+ A++RR+++S E P ++ + Sbjct: 86 KGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFRRMQLSTQTKEEKPKKIVAKDLEI 145 Query: 136 --DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D + +++G+ L E +L +L N GK ++ + ++G +D + V+ H Sbjct: 146 DVDKYEVKIKGKKVNLTPLEFDLLRFLAENEGKVFSRNVLLDKLWG-YDYFGDTRTVDVH 204 Query: 194 ISKLRKKLRNKLGFDPVDSK 213 I +LR K+ DP + K Sbjct: 205 IRRLRTKIEE----DPSNPK 220 >gi|33594059|ref|NP_881703.1| putative two-component system response regulator [Bordetella pertussis Tohama I] gi|33564133|emb|CAE43405.1| putative two-component system response regulator [Bordetella pertussis Tohama I] gi|332383476|gb|AEE68323.1| putative two-component system response regulator [Bordetella pertussis CS] Length = 236 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 86/166 (51%), Gaps = 6/166 (3%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL R+ R + +P++ ++ L L F G DD + KP E+ AR+ A+ Sbjct: 68 GHAVLHALRVER-RAALPVLMLTARDGLDDKLAGFAHGADDYLTKPFALAEVEARLLALI 126 Query: 117 RRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +R + V ++ GP++ S R+ V G+ L R+ I+E L+ + G+ V++ Q+ Sbjct: 127 QRSRGAVVDSLRSFGPLQFDSATREVAVHGKPVHLTRKCGMIVEVLLRDPGRVVSREQLE 186 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +A++G D+ + + S + LR+ L + GFD +++ G+ + Sbjct: 187 NALWG--DDPPSSDALRSQVHLLRRALADA-GFDGIETVHGTGWRL 229 >gi|330808062|ref|YP_004352524.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376170|gb|AEA67520.1| putative Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 223 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 73/140 (52%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + Sbjct: 63 LARLRARGKTLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLG 122 Query: 123 NNRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + G + D R + E+ L RE+ +LE L+A G+ ++K Q+ + ++GL Sbjct: 123 GERQQRCGGLVYDLDTRRFTLDDELLTLTSREQAVLEALIARPGRVMSKEQLAAQVFGL- 181 Query: 182 DEAVEENVVESHISKLRKKL 201 DE + +E ++ +LRKKL Sbjct: 182 DEEASPDAIEIYVHRLRKKL 201 >gi|167756093|ref|ZP_02428220.1| hypothetical protein CLORAM_01613 [Clostridium ramosum DSM 1402] gi|167704085|gb|EDS18664.1| hypothetical protein CLORAM_01613 [Clostridium ramosum DSM 1402] Length = 227 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 107/222 (48%), Gaps = 13/222 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSA----IEAFLIGK 56 +FV+ DD + + +AL + G+ ++F+ + + A D A I ++ K Sbjct: 5 IFVVEDDENIREIINLALVSN------GYEVVQFDNAIDALAEIDKKAPSLAIFDLMLPK 58 Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 + + I S++P++ +S ++ DSG DD + KP E+ ARV ++ Sbjct: 59 MSGIDAIKEIRETDSELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLL 118 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR V+++ T + V R ++ + L +E ++L YLM N+ + V + ++ + Sbjct: 119 RR-HVTSDIIRTKHLTVDKQTRLVKLDDQKLELTNKEYQLLVYLMDNKHRVVEREELLNE 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I+G +D E ++ HI LR KL N G + + R +GY Sbjct: 178 IWG-YDFIGESRALDVHIRALRSKL-NDDGHKYIKTIRSVGY 217 >gi|15964775|ref|NP_385128.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309662|ref|ZP_07589314.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307319459|ref|ZP_07598886.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|15073953|emb|CAC45594.1| Probable response regulator [Sinorhizobium meliloti 1021] gi|306894831|gb|EFN25590.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306899874|gb|EFN30497.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 233 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 11/226 (4%) Query: 1 MFVLIDDRALVKDGYIA-LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59 M +LI + L Y+A F + G+ + + E ++ S DV ++ L + Sbjct: 5 MKILIVEDDLEAAAYLAKAFREAGIVCDHASDGESGLFMASENAYDVLVVDRMLPRRDGL 64 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L + + R P++ +S + + +G DD + KP E+LARV + RR Sbjct: 65 SL-ITELRRKDIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRK 123 Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 G + + QG+ PL RE R+LEYLM N G+ V +T + + Sbjct: 124 GAPEQDMVYRVGDLELDRLSHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENV 183 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 + FD + NV++ H+S+LR K+ FDP + + R GY I Sbjct: 184 WDYHFDP--QTNVIDVHVSRLRSKIEKD--FDPPLLRTIRGAGYMI 225 >gi|320547235|ref|ZP_08041528.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] gi|320448123|gb|EFW88873.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] Length = 236 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 15/214 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D I F E + + E ++ E+ I L+ G L Sbjct: 4 ILIVDDEKPISD--IIKFNLTKEGYETVTAFDGREAIEKFEEENPDLIILDLMLPGLDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ + +R S +P+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 62 EVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121 Query: 121 -----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 SN+ G +++ D + +GE L RE +L +L + G+ + Sbjct: 122 IESAVAEENASSSNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ I +LR+K+ + Sbjct: 182 REYLLETVWG-YDYFGDVRTVDVTIRRLREKIED 214 >gi|256824718|ref|YP_003148678.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256688111|gb|ACV05913.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 239 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 24/216 (11%) Query: 10 LVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+G+ + GD G +L F ++ D+ ++ L GK + + R IR Sbjct: 33 LTKEGWSVTTCGDGGRALTAFRAVN----------PDLVLLDVMLPGKDG--MSVCREIR 80 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAE 127 A S VP+I ++ + ++G DD V KP +E+LAR A RR + Sbjct: 81 AESGVPIIMLTARTDTHDVVTGLEAGADDYVQKPFRPQELLARTRARMRRYTPPQQAQLA 140 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + + + QGE+ PL E +L L + +++ + ++G + A + Sbjct: 141 VGDLTIDVQSHIVQRQGEIIPLTPLEFDLLVALARKPMQVLSRETLLEQVWG-YQHAGDT 199 Query: 188 NVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 +V H+ +LR K+ + DP V + R +GY Sbjct: 200 RLVNVHVQRLRAKIES----DPENPTIVQTVRGVGY 231 >gi|187777475|ref|ZP_02993948.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC 15579] gi|187774403|gb|EDU38205.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC 15579] Length = 228 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 15/169 (8%) Query: 47 SAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 A E FL K + VL LP I IR S +P+I ++ + + G Sbjct: 40 EAQEGFLEYKPDLVLLDIMLPHIDGVDVLKWIRKDSTIPIIMLTAKGDTFDKVLALELGA 99 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRR 152 DD + KP +E+LARV A+ RR V N E + V + + + +P + Sbjct: 100 DDYIVKPFEPKELLARVKAVLRRYNVDNENKEALNFEQLTVDVNSYTVVYKNKEIKMPPK 159 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E +L YL N+ + + Q+ ++G +D + V+ HI +LR+KL Sbjct: 160 EFELLYYLAKNKNRVFTREQLLCEVWG-YDYPGDSRTVDVHIKRLREKL 207 >gi|170769433|ref|ZP_02903886.1| heavy metal response regulator [Escherichia albertii TW07627] gi|170121757|gb|EDS90688.1| heavy metal response regulator [Escherichia albertii TW07627] Length = 223 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 3/160 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R + P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 61 QILQTLRTAKKTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 N+ E +++ S ++ L R+E ++L L + G+ + +T I S ++G+ Sbjct: 121 LNSTLEISGLKMDSVSQNVSRDNVNITLTRKEFQLLWLLASRAGEIIPRTVIASEVWGIN 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + N V+ I +LR K+ + + + R +GYS+ Sbjct: 181 FDS--DTNTVDVAIRRLRAKVDDPFNEKLIATIRGMGYSL 218 >gi|149195027|ref|ZP_01872119.1| RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM [Caminibacter mediatlanticus TB-2] gi|149134740|gb|EDM23224.1| RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM [Caminibacter mediatlanticus TB-2] Length = 138 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 77/147 (52%), Gaps = 14/147 (9%) Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG 137 IS ++ + F+ G +D + KP + E+ R+ I++ ++N + + D Sbjct: 3 ISGNTDVKNIKEAFNLGAEDFIKKPFDYEELSIRIKKIFK----NHNEIISINKEILYDK 58 Query: 138 RDPE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 + + + PL ++E ++LE L+ NRGK V+ + + + ++ E+NV + ++ Sbjct: 59 TNKNLIIDNNIIPLTKKESQLLEILLQNRGKVVSNSALINFLW-------EDNVSLNTLN 111 Query: 196 KLRKKLRNKLGF-DPVDSKRFLGYSID 221 L K+LR KLG D + +KR LGY I+ Sbjct: 112 VLVKRLRKKLGCKDIIKTKRDLGYIIE 138 >gi|329924666|ref|ZP_08279681.1| response regulator protein GraR [Paenibacillus sp. HGF5] gi|328940500|gb|EGG36822.1| response regulator protein GraR [Paenibacillus sp. HGF5] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 13/162 (8%) Query: 65 RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R+IR+HS VP+I +S D+P+ + G DD + KP H ++A++ A RR+ Sbjct: 65 RMIRSHSNVPIIFLSSRDHPT--DMVMSMQLGADDFIQKPFHFDVLIAKIQATLRRVYNY 122 Query: 123 NN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N R G F QG L + E IL+ LM + + V++ + ++ Sbjct: 123 NTERTELRTWRGATVEFGKNTISSPQGTA-ELTKNEMFILKILMERKNQIVSREDLIKSL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 + + V +N + ++++LRKKL LG DP +++K GY Sbjct: 182 WD-NEHFVSDNTLTVNVNRLRKKLE-PLGLDPYIETKVGQGY 221 >gi|238923747|ref|YP_002937263.1| phosphate regulon transcriptional regulatory protein [Eubacterium rectale ATCC 33656] gi|238875422|gb|ACR75129.1| phosphate regulon transcriptional regulatory protein [Eubacterium rectale ATCC 33656] Length = 223 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 6/130 (4%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPR 151 G +D + KP RE++ARV ++ R K ++ + G I D ++ G++ L Sbjct: 93 GAEDYITKPFSVRELVARVNRVFLRRKSDDSSSVIHAGSISYDLDKKEARRDGQLIALSS 152 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 E RIL+ L N K V++ + I+ EA +V + ++ K++R KLG + + Sbjct: 153 LENRILDLLFTNHDKAVSRNAVLDCIW----EATGNDVYDHTVTVYMKRIRAKLGENVIK 208 Query: 212 SKRFLGYSID 221 + + +GY +D Sbjct: 209 TVKGIGYRVD 218 >gi|228914815|ref|ZP_04078424.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845134|gb|EEM90176.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 227 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 17/205 (8%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQV-PLIGIS 79 LEFE + A+ A+E F G + +L E+ R IR + V P+I ++ Sbjct: 22 LEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNISGLEVLRRIRLKNAVIPIILLT 81 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFS 135 S+ + D G D + KP E+LAR+ A R V N+ + + + Sbjct: 82 ARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNVVKEEQNSSYQIADLYLDE 141 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 R+ + + L RE +L +LM + + + + QI + ++G FD + NVV+ +I Sbjct: 142 KTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTNVWG-FDYYGDTNVVDVYIR 200 Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220 LRKK+ + + + R +GY + Sbjct: 201 YLRKKVDCNVDVPLIHTVRGVGYVL 225 >gi|229175297|ref|ZP_04302812.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] gi|228608129|gb|EEK65436.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] Length = 239 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 12/139 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----------ETGPIRVFSDGRDPEVQ 143 G DD + KP RE++ARV AI RR K+ +++ + + Q Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVKEASDEESITLAELKILPEFYEAYFQ 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202 G L +E +L YL N+ + + + Q+ SA++ +D A + +V+ HIS LR K+ + Sbjct: 156 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQ 214 Query: 203 NKLGFDPVDSKRFLGYSID 221 N + + R LGY ++ Sbjct: 215 NTKKPTYIKTIRGLGYKLE 233 >gi|118619772|ref|YP_908104.1| two component response transcriptional regulatory protein MprA [Mycobacterium ulcerans Agy99] gi|160012527|sp|A0PWB4|MPRA_MYCUA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|118571882|gb|ABL06633.1| mycobacterial persistence regulator MprA [Mycobacterium ulcerans Agy99] Length = 232 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 19/200 (9%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R+L +GY DGV +LE + +S R D ++ + LE+ R + Sbjct: 20 RSLSFNGYTVELAHDGV-----EALE----MIASDRPDALVLDVMM--PRLDGLEVCRQL 68 Query: 68 RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R+ +P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR K+ ++ A Sbjct: 69 RSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKLEDDEA 128 Query: 127 ETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 FSD V EV L R E +LE L+AN + + +++I ++G Sbjct: 129 ADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRILEEVWG- 187 Query: 181 FDEAVEENVVESHISKLRKK 200 FD N +E ++ LR+K Sbjct: 188 FDFPTSGNALEVYVGYLRRK 207 >gi|150014975|ref|YP_001307229.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901440|gb|ABR32273.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 228 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 4/144 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR + P+I I+ + + G DD + KP +E+LARV A+ RR Sbjct: 65 IDILKWIRKQKETPVIMITAKGDTFDKVLALEIGADDYIVKPFEPKELLARVKAVLRRYS 124 Query: 121 VSNNRAETGPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N + E + S D +V E +P +E +L YL N+ K + Q+ + Sbjct: 125 SENIKNEVIKLSDLSIDSTSYKVIYNEEEIKMPPKEFELLYYLANNKNKVFTREQLLCEV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G +D + V+ HI +LR+KL Sbjct: 185 WG-YDYPGDSRTVDVHIKRLREKL 207 >gi|300118833|ref|ZP_07056553.1| DNA-binding response regulator YycF [Bacillus cereus SJ1] gi|298723801|gb|EFI64523.1| DNA-binding response regulator YycF [Bacillus cereus SJ1] Length = 235 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 99/219 (45%), Gaps = 20/219 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ + DG +E ++ ++ E + ++ G+ LE+ R IR Sbjct: 23 LEKEGFEIVMAHDG-----------DEAIEKASEEQPDMVLLDIMLPGKDGLEVCREIRK 71 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122 S++P+I ++ S + + G DD V KP RE+LARV A RR K Sbjct: 72 SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 131 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N GPI + + + E L RE +L YL + G+ + + + ++G +D Sbjct: 132 NTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 190 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + V+ + +LR+K+ + + ++R +GY + Sbjct: 191 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229 >gi|257459047|ref|ZP_05624166.1| transcriptional activator protein CopR [Campylobacter gracilis RM3268] gi|257443432|gb|EEV18556.1| transcriptional activator protein CopR [Campylobacter gracilis RM3268] Length = 220 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 9/219 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ D G + G S + L D+ + +IG G Sbjct: 5 LIVEDEGMLLDMMCTYMRGAGHEVGGSKSYDEALSLAYEKSFDLWIFDVKIIG-GNGFAL 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + A P I + +LQ F SG DD + KP +E+ R + +R V Sbjct: 64 LRELREAGRGAPCIFTTSLNTLQDVESGFRSGCDDYLKKPFELKELALRADNLLKRTFVH 123 Query: 123 N--NRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N R G F + + + P+P+++ R+L L+ NR K ++K +IF+A++ Sbjct: 124 NAARRENIGGNFSFDMAQRALYHADRLVPMPQKQARLLALLLKNRDKLLSKDEIFAALWD 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +DE+ E + +I++LRK LG D + + LGY Sbjct: 184 -YDESPSELSLRVYIAELRK----ILGKDRIINASKLGY 217 >gi|146341965|ref|YP_001207013.1| putative two-component transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146194771|emb|CAL78796.1| putative Two-component transcriptional regulator [Bradyrhizobium sp. ORS278] Length = 221 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 16/164 (9%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R A +P++ ++ S +D D+G DD + KP + E+LAR+ AI RR Sbjct: 63 LKRWRGAGRHMPVLILTARASWAERVDGIDAGADDYLPKPFRNEELLARLRAIVRR---- 118 Query: 123 NNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + P+ D E Q +V L + E R++ YL+ + G+ V + ++ Sbjct: 119 -SAGHAAPVLSSGDLALDERQMKVSLSGVPVALSQLEYRLIAYLLRHNGRVVPQHELEEN 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YGL + + N +E I ++RK KLG D ++++R GY I Sbjct: 178 VYGLGHDH-DSNALEVLIRRVRK----KLGADIIETRRGFGYMI 216 >gi|322437589|ref|YP_004219679.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] gi|321165482|gb|ADW71185.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] Length = 229 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 4/151 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130 + P + ++ ++ + ++G DD + KP E++AR A+ RR V+ G Sbjct: 73 KTPTLILTARAERESIVALLNAGADDYLTKPFDLGELIARAKALIRRSTGVAAPSIRLGE 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V + + G + PL E RILEYL+ V+K Q+ +Y F+ NV+ Sbjct: 133 LEVDTLQQTVSRAGTLIPLSPMEYRILEYLIHRPRIIVSKRQLLEHMYD-FNWEHHSNVI 191 Query: 191 ESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220 E+H+S LR+KL + G +PV ++ R GY + Sbjct: 192 EAHLSNLRRKL-DPSGSEPVIETLRGRGYRL 221 >gi|284037439|ref|YP_003387369.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283816732|gb|ADB38570.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 230 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 11/168 (6%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +RA +P+I ++ ++ ++ G DD + KP RE++ARV A RR Sbjct: 62 EVCRSVRAEKPNLPIIMLTALGEIEDKVEGLGLGADDYLVKPFDIRELIARVEACLRRST 121 Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + V S R+ + L RE +LEYL+ NRG+ +AK I Sbjct: 122 LLEEMTAEPEKVWRVANLTVDSASREVKRGETTIDLTAREFALLEYLIRNRGRVMAKLDI 181 Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ L FD NVVE +I+ LRKK+ + ++ +GY + Sbjct: 182 TEQVWNLNFDPTT--NVVEVYINYLRKKIDRDFEPKLIHTRPGMGYVL 227 >gi|254822956|ref|ZP_05227957.1| two component response transcriptional regulatory protein prra [Mycobacterium intracellulare ATCC 13950] Length = 223 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 15/207 (7%) Query: 23 GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75 G+ L GF +++ E L+S+ + +A ++ VL+ ++ A + VP+ Sbjct: 16 GLRLSGFEVSTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 72 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET---GPI 131 +S S+ + ++G DD + KP E++ARV A+ RR + + +ET GP+ Sbjct: 73 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGPL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V GR V G L +RE +L L ++ +++ Q+ ++G +D A + NVV+ Sbjct: 133 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 I LR+KL G + + R +G+ Sbjct: 192 VFIGYLRRKLEAHGGPRLLHTVRGVGF 218 >gi|224372441|ref|YP_002606813.1| DNA-binding response regulator [Nautilia profundicola AmH] gi|223589062|gb|ACM92798.1| DNA-binding response regulator [Nautilia profundicola AmH] Length = 219 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 8/164 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G ++ + IR S P+I I+ S + F SG DD + KP +E+ R+ AI Sbjct: 58 GMNGFDVAKEIRKFSDTPIIFITSLDSEKDIEKGFLSGGDDYIRKPFSLKELKLRIDAIL 117 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR+ ++ + + G F D + E+ GE L + ++L + +RG+ + K +IF Sbjct: 118 RRMYGNSEKVDLGEGFEF-DVKSMELLKNGEPVHLKTKVAKLLNLFIKHRGEVLDKEKIF 176 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 S IY EE E+ + K LR+ LG D +++ + +GY Sbjct: 177 SEIYD-----YEETPNEASLRTFVKTLRSILGNDKIETIKDVGY 215 >gi|118477643|ref|YP_894794.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225864192|ref|YP_002749570.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|229184439|ref|ZP_04311645.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus BGSC 6E1] gi|118416868|gb|ABK85287.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225788434|gb|ACO28651.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228599018|gb|EEK56632.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus BGSC 6E1] Length = 227 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 17/205 (8%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQV-PLIGIS 79 LEFE + A+ A+E F G + +L E+ R IR + V P+I ++ Sbjct: 22 LEFEGYESEIAKTGTEAMENFENGNWDLILLDVMLPNISGLEVLRRIRLKNAVIPIILLT 81 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFS 135 S+ + D G D + KP E+LAR+ A R V N+ + + + Sbjct: 82 ARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNVVKEEENSSYQIADLYLDE 141 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 R+ + + L RE +L +LM + + + + QI + ++G FD + NVV+ +I Sbjct: 142 KTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTNVWG-FDYYGDTNVVDVYIR 200 Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220 LRKK+ + + + R +GY + Sbjct: 201 YLRKKVDCNVDVPLIHTVRGVGYVL 225 >gi|16766096|ref|NP_461711.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56414742|ref|YP_151817.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62181286|ref|YP_217703.1| tricarboxylic transport: regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615674|ref|YP_001589639.1| hypothetical protein SPAB_03459 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552720|ref|ZP_02346472.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992501|ref|ZP_02573599.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233741|ref|ZP_02658799.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238695|ref|ZP_02663753.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244578|ref|ZP_02669510.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262111|ref|ZP_02684084.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464100|ref|ZP_02698017.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822904|ref|ZP_02834904.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444892|ref|YP_002042026.1| transcriptional regulator TctD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450259|ref|YP_002046745.1| transcriptional regulator TctD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472936|ref|ZP_03078920.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737394|ref|YP_002115739.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197266024|ref|ZP_03166098.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197363670|ref|YP_002143307.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242096|ref|YP_002216758.1| transcriptional regulator TctD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200386900|ref|ZP_03213512.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929393|ref|ZP_03220467.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353737|ref|YP_002227538.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858053|ref|YP_002244704.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238909555|ref|ZP_04653392.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|325530291|sp|E1WA34|TCTD_SALTS RecName: Full=Transcriptional regulatory protein tctD gi|325530292|sp|P0CL17|TCTD_SALTY RecName: Full=Transcriptional regulatory protein tctD gi|11128401|gb|AAG31204.1|AF020810_5 TctD [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|295218|gb|AAA27232.1| membrane associated regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421333|gb|AAL21670.1| tricarboxylic transport regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56128999|gb|AAV78505.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128919|gb|AAX66622.1| tricarboxylic transport: regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161365038|gb|ABX68806.1| hypothetical protein SPAB_03459 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403555|gb|ACF63777.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408563|gb|ACF68782.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194459300|gb|EDX48139.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712896|gb|ACF92117.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633172|gb|EDX51586.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095147|emb|CAR60696.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197244279|gb|EDY26899.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288507|gb|EDY27884.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936612|gb|ACH73945.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603998|gb|EDZ02543.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321112|gb|EDZ06312.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273518|emb|CAR38501.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322727|gb|EDZ10566.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329319|gb|EDZ16083.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332210|gb|EDZ18974.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336574|gb|EDZ23338.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340766|gb|EDZ27530.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349080|gb|EDZ35711.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709856|emb|CAR34209.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247926|emb|CBG25759.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994894|gb|ACY89779.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159349|emb|CBW18867.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913807|dbj|BAJ37781.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087188|emb|CBY96954.1| Response regulator mprA Mycobacterial persistence regulator A [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223577|gb|EFX48642.1| Tricarboxylate transport transcriptional regulator TctD [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614392|gb|EFY11323.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621543|gb|EFY18396.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624404|gb|EFY21237.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626602|gb|EFY23407.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633538|gb|EFY30280.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638419|gb|EFY35117.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639722|gb|EFY36406.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322643768|gb|EFY40318.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649454|gb|EFY45888.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655956|gb|EFY52256.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661351|gb|EFY57576.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662549|gb|EFY58757.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666923|gb|EFY63098.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671293|gb|EFY67416.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677700|gb|EFY73763.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681473|gb|EFY77503.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683872|gb|EFY79882.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715771|gb|EFZ07342.1| regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131137|gb|ADX18567.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323193739|gb|EFZ78942.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197473|gb|EFZ82610.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203288|gb|EFZ88317.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205234|gb|EFZ90209.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212753|gb|EFZ97564.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218105|gb|EGA02817.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221632|gb|EGA06045.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227156|gb|EGA11330.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230868|gb|EGA14986.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234781|gb|EGA18867.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238820|gb|EGA22870.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241520|gb|EGA25551.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248333|gb|EGA32269.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252901|gb|EGA36735.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256977|gb|EGA40686.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260548|gb|EGA44159.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264394|gb|EGA47900.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269528|gb|EGA52981.1| transcriptional regulatory protein TctD [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624516|gb|EGE30861.1| regulatory protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628844|gb|EGE35187.1| regulatory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989661|gb|AEF08644.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 224 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 108/218 (49%), Gaps = 19/218 (8%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPR 65 ++ALV++G F D V F+ L + L S ++ A+ I G LE+ + Sbjct: 17 EKALVQNG----FAVDCV----FDGLAADHLLHS----EMYALAVLDINMPGMDGLEVVQ 64 Query: 66 IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 +R Q +P++ ++ ++ + + G DD + KP E+ AR+ A+ RR + Sbjct: 65 RLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSAGQVH 124 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + +F D +QG+ L RE+ +L LM R + V++ Q+F ++ L DE Sbjct: 125 EVQQLGELIFHDEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFSLNDEV 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 E+ +E +I +LRKKL+ G D + + R LGY ++ Sbjct: 185 SPES-IELYIHRLRKKLQ---GSDVRITTLRGLGYVLE 218 >gi|154244160|ref|YP_001415118.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158245|gb|ABS65461.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 233 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + +G DD V KP E+LARV A+ R Sbjct: 62 IELCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALLR 121 Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R K + G I + + G L E R+LE+LM + G+ ++ Q+ Sbjct: 122 RAKPEHVATLLRAGDIELDRETHRVHRAGREVHLGPTEFRLLEFLMQSPGRVFSREQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ H+ +LRK + DP+ + R GYS + Sbjct: 182 GVWGQ-DVYIDERTVDVHVGRLRKAINRGRQSDPIRTVRGAGYSFN 226 >gi|319776032|ref|YP_004138520.1| transcriptional regulatory protein QseB [Haemophilus influenzae F3047] gi|329123190|ref|ZP_08251759.1| two component response regulator [Haemophilus aegyptius ATCC 11116] gi|317450623|emb|CBY86843.1| transcriptional regulatory protein QseB [Haemophilus influenzae F3047] gi|327471535|gb|EGF16979.1| two component response regulator [Haemophilus aegyptius ATCC 11116] Length = 220 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 94/201 (46%), Gaps = 4/201 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D L+ +G G +++ F + +SA D ++ L G +V Sbjct: 3 ILLIEDDNLIGNGLQIGLTTLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ R H VP++ ++ +L + SG DD + KP E+ AR+ A+ RR Sbjct: 63 LQQWR--SNHQDVPVLILTARDTLDERVKSLQSGADDYLCKPFALAEVAARLQALIRRYG 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ E +++ + R + + L RE ++LE M N+ + ++++ I + Sbjct: 121 YHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS- 179 Query: 181 FDEAVEENVVESHISKLRKKL 201 +DE + ++ HI LR+KL Sbjct: 180 WDEEISSGALDVHIYNLRQKL 200 >gi|319896803|ref|YP_004134997.1| transcriptional regulatory protein qseb [Haemophilus influenzae F3031] gi|317432306|emb|CBY80659.1| transcriptional regulatory protein QseB [Haemophilus influenzae F3031] Length = 220 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 94/201 (46%), Gaps = 4/201 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D L+ +G G +++ F + +SA D ++ L G +V Sbjct: 3 ILLIEDDNLIGNGLQIGLTTLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ R H VP++ ++ +L + SG DD + KP E+ AR+ A+ RR Sbjct: 63 LQQWR--SNHQDVPVLILTARDTLDERVKSLQSGADDYLCKPFALAEVAARLQALIRRYG 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ E +++ + R + + L RE ++LE M N+ + ++++ I + Sbjct: 121 YHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS- 179 Query: 181 FDEAVEENVVESHISKLRKKL 201 +DE + ++ HI LR+KL Sbjct: 180 WDEEISSGALDVHIYNLRQKL 200 >gi|120435181|ref|YP_860867.1| two-component system response regulator [Gramella forsetii KT0803] gi|117577331|emb|CAL65800.1| two-component system response regulator [Gramella forsetii KT0803] Length = 225 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 2/148 (1%) Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRV 133 +I +S SL + D+G DD + KP H E+ ARV A+ RR K + G + + Sbjct: 75 VIIVSARNSLDDRIQGLDTGADDYIAKPFHMAELNARVKALLRRKKFDGSVLFNIGNLHI 134 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVVES 192 S+ + L R+E IL YL N+ + V+K+ + ++G D+A + S Sbjct: 135 DSEKHTSYTEFGEMELNRKEFDILTYLATNQNRLVSKSALAEHVWGDHIDQADNFEFIYS 194 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I LRKKL++ + + + +GY + Sbjct: 195 QIKNLRKKLKDVMAEVEIKAIYGIGYKL 222 >gi|154492635|ref|ZP_02032261.1| hypothetical protein PARMER_02269 [Parabacteroides merdae ATCC 43184] gi|154086940|gb|EDN85985.1| hypothetical protein PARMER_02269 [Parabacteroides merdae ATCC 43184] Length = 228 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 73/137 (53%), Gaps = 8/137 (5%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 + +P+I ++ + L F+ G DD ++KP R+++ARV A+ RR E Sbjct: 75 ADIPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVVARVKAVLRRTSDKEKVPENEC 134 Query: 131 IRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA- 184 ++ + D + V G+ PL ++E IL+ L+ N+G ++ +I S I+ DE Sbjct: 135 LKYETLSLDTKRIKASVDGQEVPLTKKEFEILKLLLENKGNVFSREEILSRIWK--DEVY 192 Query: 185 VEENVVESHISKLRKKL 201 V + ++ +I++LRKK+ Sbjct: 193 VLDRTIDVNITRLRKKI 209 >gi|109898617|ref|YP_661872.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700898|gb|ABG40818.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] Length = 244 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 15/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNS--LEFEEWLQSSAREDVSAIEAFLIGKGEK 59 +L+DD + ++G +E +S E LQS ++ + ++ G Sbjct: 8 ILLVDDDETLCSLLSEFLQEEGFEVETLHSGNAATERLLQS---DEFDTVVLDIMMPGMS 64 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +RA QVP++ ++ + + G DD + KP + RE+ AR+ AI RR Sbjct: 65 GLDVLRSVRAKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAIIRRT 124 Query: 120 KVSNNRAETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + S G I + + R V PL E L LM G+ + K Sbjct: 125 ENSLGNGAAGKTIVHALLHGIELDTGTRTAVVNNTTLPLTSAEFNALSLLMERAGQTITK 184 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + EA + ++ HIS++R+KL ++ D + S R +GY + Sbjct: 185 QDMTQEVLNRPLEAYDR-AMDVHISRIRQKLSSQGINDVIKSIRGVGYQM 233 >gi|114562310|ref|YP_749823.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114333603|gb|ABI70985.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 227 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 8/151 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETG 129 P+I ++ S Q + D+G DD ++KP E++AR+ A+ RR S +A + G Sbjct: 74 PIIILTARDSWQDKVVGLDAGADDYLSKPFQLEELVARINALIRR---SAGKASPVIQNG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P + + + + ++ L E ++ EYLM + G +K+ + IY D ++ NV Sbjct: 131 PFSINTRSLEIKKSLQIINLSGSEYKLFEYLMLHPGSVHSKSSLIEHIYDQ-DFDLDSNV 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E I +LRKKL + +++ R GY + Sbjct: 190 IEVFIRRLRKKLDPDNQYQLIETLRGQGYRL 220 >gi|268609373|ref|ZP_06143100.1| DNA-binding response regulator [Ruminococcus flavefaciens FD-1] Length = 223 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 3/152 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R ++ +P++ +S L F G+DD + KP+ E+ RV A+ RR ++ ++ Sbjct: 69 RLNANIPILFLSARDDLSAKEKGFRLGIDDYMVKPVELAELEMRVRALLRRANIAESKKL 128 Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 T G + + D V GE PL RE IL L++ K ++ Q+ +G+ D Sbjct: 129 TVGDLTLDGDAMTGTVNGEELPLSTREFNILFKLLSYPNKTFSRAQLMDEFWGM-DSDAS 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ +I++LR K G + + + R +GY Sbjct: 188 LRSVDVYITRLRDKTSVCTGLE-IKTIRGIGY 218 >gi|237734077|ref|ZP_04564558.1| signal transduction regulator [Mollicutes bacterium D7] gi|229382903|gb|EEO32994.1| signal transduction regulator [Coprobacillus sp. D7] Length = 229 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 107/222 (48%), Gaps = 13/222 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSA----IEAFLIGK 56 +FV+ DD + + +AL + G+ ++F+ + + A D A I ++ K Sbjct: 7 IFVVEDDENIREIINLALVSN------GYEVVQFDNAIDALAEIDKKAPSLAIFDLMLPK 60 Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 + + I S++P++ +S ++ DSG DD + KP E+ ARV ++ Sbjct: 61 MSGIDAIKEIRETDSELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLL 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR V+++ T + V R ++ + L +E ++L YLM N+ + V + ++ + Sbjct: 121 RR-HVTSDIIRTKHLTVDKQTRLVKLDDQKLELTNKEYQLLVYLMDNKHRVVEREELLNE 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I+G +D E ++ HI LR KL N G + + R +GY Sbjct: 180 IWG-YDFIGESRALDVHIRALRSKL-NDDGHKYIKTIRSVGY 219 >gi|210612025|ref|ZP_03289141.1| hypothetical protein CLONEX_01340 [Clostridium nexile DSM 1787] gi|210151783|gb|EEA82790.1| hypothetical protein CLONEX_01340 [Clostridium nexile DSM 1787] Length = 243 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 2/141 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +EL + ++ ++P I ++ + L FD+G D V KP + ++ R+ + +R Sbjct: 80 IELYQELQMEKRIPAIFLTARDEEKEMLLAFDAGAQDYVVKPFSMKVLMKRLEVVLKR-- 137 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R G + ++ D + L +E ++LEYLM N+G+ + K I I+G+ Sbjct: 138 NPEERYMVGELTLYPDRKQVFTGKTEISLTAKEYQLLEYLMRNQGQVLTKENILETIWGV 197 Query: 181 FDEAVEENVVESHISKLRKKL 201 + V +N V I++LR+K+ Sbjct: 198 DGQFVVDNTVSVTINRLRRKI 218 >gi|187926390|ref|YP_001892735.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|241665877|ref|YP_002984236.1| transcriptional regulator [Ralstonia pickettii 12D] gi|187728144|gb|ACD29308.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|240867904|gb|ACS65564.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12D] Length = 219 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 3/170 (1%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G+ LE+ R +RA S+VP++ ++ L + G DD V KP RE++AR+ Sbjct: 51 LMLPGKDGLEICREVRAFSEVPIVMVTARVEEIDRLLGLELGADDYVCKPFSPRELVARI 110 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 I RR++ E+ + + + ++G+ L E R+L L G+ ++++ Sbjct: 111 KTILRRVQRGGGVPESA-LHIDAAAYAATLRGQRLDLTPVEFRLLAALAGAPGRILSRSN 169 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + IY V + V++HI LR+K+ G + + S +GY +D Sbjct: 170 LLEQIYD-DHRIVTDRTVDTHIKNLRRKMEQVSPGTEMIHSVYGVGYRLD 218 >gi|83747585|ref|ZP_00944622.1| probable two-component response regulator [Ralstonia solanacearum UW551] gi|207725031|ref|YP_002255428.1| two-component response regulator protein [Ralstonia solanacearum MolK2] gi|207738626|ref|YP_002257019.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] gi|83725765|gb|EAP72906.1| probable two-component response regulator [Ralstonia solanacearum UW551] gi|206590261|emb|CAQ37222.1| two-component response regulator protein [Ralstonia solanacearum MolK2] gi|206591994|emb|CAQ58900.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] Length = 226 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 17/229 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGE 58 ++I+D A V D F G+ EG+ L E LQ + + + + L+ G Sbjct: 3 ILVIEDDARVSD-----FLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGM 57 Query: 59 KVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LEL + +RA + VP++ ++ + + G DD + KP E+LAR+ A+ R Sbjct: 58 SGLELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLR 117 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R + R + ++V D E G+ PL +E LE LM+ G+ ++ + Sbjct: 118 RGR--EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRER 175 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I S ++G ++ + N+V+ ++ +LR K+ + + R LGY +D Sbjct: 176 ILSNVWGANEDPL-TNIVDVYVRRLRSKIDEGHPVPLLKTVRGLGYRLD 223 >gi|95928665|ref|ZP_01311412.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] gi|95135455|gb|EAT17107.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] Length = 233 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 23/230 (10%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + VL DD A DG + +DG S +++ E + E V E +I E Sbjct: 11 VLVLTDD-AQNCDGTVTCLSEDGFSPAVYHN---AEEILGVCEELVP--ELVVIDVAESS 64 Query: 61 LELP---RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 L++ R +R PL+ ++++ + + G DD V KPI + AR+ A+ R Sbjct: 65 LDVASSCRFLREQYTGPLVVLAEHADEMFQVLGLEMGADDFVVKPISATLLRARIRAVLR 124 Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R +++ + G + V S R+ G+ L +E +L YL + +++ QI Sbjct: 125 RRQLAETGEDATITLGSLEVDSGRREVSCGGKSVDLTSKEFDLLWYLARHARTVLSRDQI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 + A++GL E N V+ + +LRNKLG DP + + R +GY Sbjct: 185 YEALFGL-----EYNGVDRSVDIYISRLRNKLGEDPSRPQLLKTVRGVGY 229 >gi|291446254|ref|ZP_06585644.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291349201|gb|EFE76105.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 283 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 100/209 (47%), Gaps = 22/209 (10%) Query: 31 SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78 +L +E W SA + +A+ A ++ + + L R+ R ++ VP++ + Sbjct: 74 ALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVMLPDMDGLAVLGRLRREYADVPVLFL 133 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAET----GPIR 132 + +++ + +G DD V KP E++AR+ + RR V+ R E+ G + Sbjct: 134 TARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGSAVAAGRGESTLTVGDLV 193 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + D + GE + E +L +LM N + ++K QI ++ +D + NVVE Sbjct: 194 LDEDSHEVWRGGEAIHVTATEFELLRFLMRNPRRVLSKAQILDRVWN-YDFGGQANVVEL 252 Query: 193 HISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +IS LRKK+ G P + ++R GY I Sbjct: 253 YISYLRKKI--DAGRTPMIHTRRGAGYLI 279 >gi|212712385|ref|ZP_03320513.1| hypothetical protein PROVALCAL_03473 [Providencia alcalifaciens DSM 30120] gi|212685131|gb|EEB44659.1| hypothetical protein PROVALCAL_03473 [Providencia alcalifaciens DSM 30120] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 7/152 (4%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 ++ +P+I ++ + + DSG DD + KP E+++RV AI RR+ S+ Sbjct: 68 QSGESIPIIILTARNKMDNLVTSLDSGADDFLTKPFEMPELISRVKAISRRMAGFSSEIW 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + +++ + G++ L +E +L L+ N V KT + ++GL D VE Sbjct: 128 QLDNLQLNPLNHQVTLDGQLLLLSGKEYLLLYELIKNADNVVRKTDLEQRLFGLDD--VE 185 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 N +E HI LR+ K+G D + + R +GY Sbjct: 186 SNSLEVHIHNLRR----KIGKDRIITIRGIGY 213 >gi|148259593|ref|YP_001233720.1| two component transcriptional regulator [Acidiphilium cryptum JF-5] gi|326402799|ref|YP_004282880.1| transcriptional regulatory protein OmpR [Acidiphilium multivorum AIU301] gi|146401274|gb|ABQ29801.1| two component transcriptional regulator, winged helix family [Acidiphilium cryptum JF-5] gi|325049660|dbj|BAJ79998.1| transcriptional regulatory protein OmpR [Acidiphilium multivorum AIU301] Length = 240 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 16/195 (8%) Query: 27 EGFNSLEFEEWLQSSAR---EDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+ + E + + A DV+ + L+ GE L L R IRA S VP+I ++ Sbjct: 26 EGYGTREADSEAGTHAALLGGDVTLVLLDLMLGGEDGLALARAIRARSDVPIIMLTGKDD 85 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP------IRVFSDG 137 + + ++G DD + KP H RE+LAR+ A+ RR+ P IR Sbjct: 86 VIDRVAGLEAGADDYIAKPFHLREVLARIRALKRRMTGRGTPEPAEPDPPEAVIRFDGHA 145 Query: 138 RDPEVQ------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 DP + G PL E +L + + G+ + + Q+ + + G EA + +V+ Sbjct: 146 LDPLGRTLRGRDGADIPLTTAEFELLAVFLRHAGRVLDRDQLLNLLKGRDFEAF-DRLVD 204 Query: 192 SHISKLRKKLRNKLG 206 + + +LR+K+ G Sbjct: 205 TQVMRLRRKIEQDPG 219 >gi|116671596|ref|YP_832529.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116611705|gb|ABK04429.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 78/168 (46%), Gaps = 12/168 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR S VP+I +S + + ++ D+G DD V KP E+LAR+ A RR Sbjct: 61 VEVIRGIRGWSSVPVIVLSARHASEDKVEALDAGADDYVTKPFGLDELLARLRAASRRSP 120 Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ET V R G L E ILE L+ N+GK V++ Q+ + ++ Sbjct: 121 AQREAPTVETADFVVDLAARKVVRDGHEIRLTPTEWNILELLVRNQGKLVSQQQLLTQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221 G A E + ++++LR+KL DP + +GY D Sbjct: 181 GQA-YAKETQYLRVYLAQLRRKLEQ----DPARPRHLHTEAGMGYRFD 223 >gi|317509412|ref|ZP_07967031.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316252335|gb|EFV11786.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 239 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 9/140 (6%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P+ +S S+ ++ ++G DD + KP E++ARV A+ RR +N A T Sbjct: 81 IPICVLSARSSVGDRIEGLEAGADDYLTKPFVLGELVARVKALLRRPSTTNRPAPTVEFG 140 Query: 133 VFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 V GR V E L +RE +L L N G +++T++ ++G +D A Sbjct: 141 VIHVDYLSVDIPGRRVTVDDEPVELTKREFELLAALAENTGVVLSRTELLERVWG-YDFA 199 Query: 185 VEENVVESHISKLRKKLRNK 204 + NVV+ + LRKKL K Sbjct: 200 ADTNVVDVFVGYLRKKLELK 219 >gi|225024963|ref|ZP_03714155.1| hypothetical protein EIKCOROL_01852 [Eikenella corrodens ATCC 23834] gi|224942294|gb|EEG23503.1| hypothetical protein EIKCOROL_01852 [Eikenella corrodens ATCC 23834] Length = 221 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 11/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D ++ D D G +++ N+ S D+ ++ L G+ G V Sbjct: 3 ILLIEDDTMIADAVAGSLKDSGYAVDWINNGRTAVTAFGSQSYDLILLDLGLPGQDGLDV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 L+ R + + P++ ++ L + L D G DD + KP E+ AR+ A+ RR Sbjct: 63 LQQLR--GSGNTTPVLILTARDDLHSRLSGLDGGADDYLIKPFDMAELQARIRAVLRRQH 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +N G + + E+ G+ P L +E ILE L+ G ++++ + I Sbjct: 121 QRANPLLGNGSLTLNPAAHQVEIVGQSEPVALSNKEFAILEALLQRPGTILSRSSLEDKI 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 YG + E VE N ++ I LRK K+G + + + R +G+ + Sbjct: 181 YG-WGEEVESNAIDYLIHALRK----KIGKEHIKNIRGVGWMV 218 >gi|303234314|ref|ZP_07320954.1| putative DNA-binding response regulator MtrA [Finegoldia magna BVS033A4] gi|302494567|gb|EFL54333.1| putative DNA-binding response regulator MtrA [Finegoldia magna BVS033A4] Length = 226 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 17/152 (11%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDS------GVDDVVNKPIHHREILARVAAI 115 E+ + IR S +P++ +S +D FD G DD + KP RE+LARV A Sbjct: 62 EICQNIRIKSTIPILILS------AKIDEFDKVKGLNLGADDYITKPFRPRELLARVNAQ 115 Query: 116 YRRLKVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR +V N + IR+++ E G L R E +L +L N + ++ Sbjct: 116 LRRSQVFNKENLEIIDIENIRIYTKEYKVEKNGRDLDLSRNEFELLVFLSKNPKQVFSRE 175 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 Q++ I+G FD + N V I++LR+K+ + Sbjct: 176 QLYERIWG-FDSYGDLNTVTVTINRLRQKIED 206 >gi|226946942|ref|YP_002802015.1| response regulator TctD [Azotobacter vinelandii DJ] gi|226721869|gb|ACO81040.1| response regulator TctD [Azotobacter vinelandii DJ] Length = 223 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 76/141 (53%), Gaps = 4/141 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ ++VP++ ++ ++ + + G DD + KP E+ ARV A+ RR + Sbjct: 63 LARLRERGNRVPVLMLTARAEVKDRVQGLNLGADDYLAKPFELTELEARVKALLRRSVLG 122 Query: 123 NNRAETGPIRVF--SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R + V+ + GR + GE L RE+ +L L+A G+ ++K Q+ S ++GL Sbjct: 123 GERQQRCGELVYDLATGRFA-LAGEPLNLTAREQAVLSALIARPGRVMSKEQLASQVFGL 181 Query: 181 FDEAVEENVVESHISKLRKKL 201 DE V + +E +I +LR+KL Sbjct: 182 DDE-VSPDAIEIYIHRLRRKL 201 >gi|226322434|ref|ZP_03797952.1| hypothetical protein COPCOM_00205 [Coprococcus comes ATCC 27758] gi|225209156|gb|EEG91510.1| hypothetical protein COPCOM_00205 [Coprococcus comes ATCC 27758] Length = 226 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/225 (24%), Positives = 104/225 (46%), Gaps = 10/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D A +++ + G GF E + ++ A E I ++ GE Sbjct: 1 MIFCVEDEANIRELVVYTLETTGFEARGFE--EGTSFFEALAEELPELILLDIMLPGEDG 58 Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ + ++ + +P+I ++ + + D+G DD V KP E+++R+ A+ R Sbjct: 59 MEILKKLKTSGRTKDIPVIMVTAKGAEYDKVMGLDAGADDYVTKPFGMMELVSRIRAVLR 118 Query: 118 RL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R K ++ G IR+ + V GE L +E +L LM N+ + + ++ Sbjct: 119 RTSKKEEDDTYVLGEIRMDRKKHEVTVAGEPVALTLKEYELLRKLMENQNIVLTRDKLLE 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D E V+ H+ LR+KL + +++ R +GY I Sbjct: 179 EIWG-YDFDGETRTVDVHVRTLRQKLGQAGEY--IETVRGVGYRI 220 >gi|210630068|ref|ZP_03296230.1| hypothetical protein COLSTE_00114 [Collinsella stercoris DSM 13279] gi|210160688|gb|EEA91659.1| hypothetical protein COLSTE_00114 [Collinsella stercoris DSM 13279] Length = 236 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 96/205 (46%), Gaps = 12/205 (5%) Query: 23 GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA---HSQVPLIGIS 79 G+ EGF S E+ + AR A+ ++ LE+ R +RA + VP++ ++ Sbjct: 34 GIEAEGFAS--DSEFKAAVARRVPDAVLLDIMLPDTDGLEIMRRLRADQATATVPIMMLT 91 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFS 135 S + D G DD + KP E+ +R A+ RR +++ A + G I + Sbjct: 92 AKDSELDKVVALDGGADDYLTKPFSLMELTSRCRALLRRGGMTSRPASETLQVGGIELSP 151 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 R V+G+ L RE +LEYLM G + + +++G +D V+ H+ Sbjct: 152 SRRTVRVEGQELKLTLREFDLLEYLMRKPGVVFTRESLLQSVWG-WDFDGGSRTVDVHVQ 210 Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220 LR+KL + D +++ R +GY + Sbjct: 211 TLRQKLGDH--ADRIETVRGVGYRL 233 >gi|94967540|ref|YP_589588.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549590|gb|ABF39514.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 232 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L + +RA SQVP+I +S +T + D G DD + KP + E+LAR+ A RR Sbjct: 62 LALCKELRARSQVPIIVLSVKEDERTKVKALDLGADDYITKPFNINELLARIRANLRRAP 121 Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V+ E G + + +V+G L +E +L YL + GK V + S+++ Sbjct: 122 VAEIATILELGDFVIDTAAHLVKVRGTEVRLTPKEFDLLLYLARHPGKVVPHRTLLSSVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 G D A + + + +LRKK+ + + ++R++GY Sbjct: 182 GA-DHAEQSEYLRVFVGQLRKKIEGENSNKRYILTERWIGY 221 >gi|2245588|gb|AAB92482.1| IrlR [Burkholderia pseudomallei 1026b] Length = 229 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 107/217 (49%), Gaps = 17/217 (7%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66 + L + G+IA + +DGV+ G + E EE+ D+ ++ L G G VLE R+ Sbjct: 18 KGLTEAGFIADWVEDGVT--GLHQAETEEY-------DLIILDVMLPGHDGWTVLE--RL 66 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 RAHS P++ ++ + + + G DD V KP E++ARV +I RR + + Sbjct: 67 RRAHS-TPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQARESTV 125 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 + + R QG+V L +E +L LM G+ + + I S ++ + F+ Sbjct: 126 LRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDMNFNS- 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVV++ I +LR K+ + + + R +GY ++ Sbjct: 185 -DTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220 >gi|85713650|ref|ZP_01044640.1| phosphate regulon transcriptional regulatory protein phoB [Nitrobacter sp. Nb-311A] gi|85699554|gb|EAQ37421.1| phosphate regulon transcriptional regulatory protein phoB [Nitrobacter sp. Nb-311A] Length = 234 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 10/168 (5%) Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +RA ++P+I ++ + +G DD V KP E+LARV ++ R Sbjct: 62 IELCRRLRARPETKELPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLLR 121 Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R S R + G I + D G L E R+LE+ + + G+ ++ Q+ Sbjct: 122 R--ASPARLASILTFGDIELDRDRHRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 180 LNSVWG-RDVYIDERTVDVHIGRLRKLLNPDGEADPIRTVRGAGYALD 226 >gi|325122777|gb|ADY82300.1| two component heavy metal response transcriptional regulator, winged helix family [Acinetobacter calcoaceticus PHEA-2] Length = 223 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 4/158 (2%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123 +++R S++P+I ++ + + + G DD + KP + E+LAR+ ++ RR + + Sbjct: 64 QVLRQFSRIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQYLQE 123 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182 N +++ G G + L + E +L YL+ N+ + V + QI S ++ + FD Sbjct: 124 NELSISDLKMDVVGHKVWRNGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNINFD 183 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N ++ + +LR K+ + + R LGY I Sbjct: 184 --TDTNFIDVAVRRLRSKIDEGYELKLIHTIRGLGYKI 219 >gi|300857140|ref|YP_003782124.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300437255|gb|ADK17022.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 238 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 22/168 (13%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + R IR S VP+I ++ S L + G DD + KP + +LAR+ I +R Sbjct: 78 ICREIRKTSDVPIIIVTSRDSDADELISMNLGADDFITKPYNTEILLARITNILKRTYGN 137 Query: 119 LKVSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 LK SN N + ++ D + L + E +IL YL+ NRG V + Sbjct: 138 LKTSNILNYKDFNLNLSNATVIYKD--------KSLELTKNEVKILSYLINNRGSIVKRD 189 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 + ++ + D V+++ + +I++LRKKL ++G +P++++R LGY Sbjct: 190 LLMEYLWKV-DYFVDDSALTVNINRLRKKLE-EIGIKNPIETRRGLGY 235 >gi|300694393|ref|YP_003750366.1| DNA-binding response regulator in two-component system [Ralstonia solanacearum PSI07] gi|299076430|emb|CBJ35746.2| DNA-binding response regulator in two-component system [Ralstonia solanacearum PSI07] Length = 232 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 17/229 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGE 58 ++I+D A V D F G+ EG+ L E LQ + + + + L+ G Sbjct: 9 ILVIEDDARVSD-----FLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGM 63 Query: 59 KVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LEL + +RA + VP++ ++ + + G DD + KP E+LAR+ A+ R Sbjct: 64 SGLELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLR 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R + R + ++V D E G+ PL +E LE LM+ G+ ++ + Sbjct: 124 RGR--EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRER 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I S ++G ++ + N+V+ ++ +LR K+ + + R LGY +D Sbjct: 182 ILSNVWGANEDPL-TNIVDVYVRRLRSKIDEGHPVPLLKTVRGLGYRLD 229 >gi|297193412|ref|ZP_06910810.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151766|gb|EFH31343.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 247 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 20/207 (9%) Query: 31 SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78 +L +E W SA + A+ ++ + + L R+ R VP++ + Sbjct: 40 ALRYEGWEVRSAGDGAGAVRTVREFRPDAVVLDIMLPDMDGLAVLGRLRREAPDVPVLFL 99 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134 + +++ + +G DD V KP E++AR+ + RR + R+E+ G + + Sbjct: 100 TARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGTAAVRSESLLAVGDLTLD 159 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D + G+ L E +L YLM N + ++K QI ++ +D + NVVE +I Sbjct: 160 EDSHEVTRGGQSIHLTATEFELLRYLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 218 Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220 S LR+K+ G P + ++R GY I Sbjct: 219 SYLRRKI--DAGRPPMIHTRRGAGYLI 243 >gi|289450843|ref|YP_003474420.1| putative transcriptional regulatory protein CutR [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185390|gb|ADC91815.1| putative transcriptional regulatory protein CutR [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 226 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 81/162 (50%), Gaps = 6/162 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + ++ +I ++ + + D+G +D + KP H E+ AR+ ++ RR +V Sbjct: 63 LERLRAVNKEIRVIILTARTDIDDLVRGLDTGANDYLVKPFHFVELEARIRSLLRRRQVQ 122 Query: 123 NNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + T F+ + G L +E ILEYL+ NRG+ V++ ++ ++ Sbjct: 123 EDLLITCQGFSFNLKTKAVSCAGGELRLTSKELSILEYLLLNRGRHVSQEELLEHVW--- 179 Query: 182 DEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + E N V H+S LRKKL+ G + ++ GY I+ Sbjct: 180 EDGMNEFSNTVRVHVSALRKKLKAATGRVVITNEIGRGYIIE 221 >gi|183984600|ref|YP_001852891.1| two-component response transcriptional regulatory protein PrrA [Mycobacterium marinum M] gi|183177926|gb|ACC43036.1| two-component response transcriptional regulatory protein PrrA [Mycobacterium marinum M] Length = 236 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 15/207 (7%) Query: 23 GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75 G+ L GF +++ E L+S+ + +A ++ VL+ ++ A + VP+ Sbjct: 29 GLRLSGFEVSTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 85 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET---GPI 131 +S S+ + ++G DD + KP E++ARV A+ RR + + +ET GP+ Sbjct: 86 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGPL 145 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V GR V G L +RE +L L ++ +++ Q+ ++G +D A + NVV+ Sbjct: 146 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 204 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 I LR+KL G + + R +G+ Sbjct: 205 VFIGYLRRKLEANGGPRLLHTVRGVGF 231 >gi|171779491|ref|ZP_02920455.1| hypothetical protein STRINF_01336 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282108|gb|EDT47539.1| hypothetical protein STRINF_01336 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ G DD + KP + E+ R+ A+ +R K ++N + Sbjct: 73 TPVLIMTAKESLNDKGHGFELGADDYLTKPFYLEELKMRIQALLKRSGKFNDNTLSYHEL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + V G+ L +E +L Y + N+ + K+QIF I+G FD +VVE Sbjct: 133 TADTSTNTTTVNGKKVELLGKEFDLLVYFLQNQNVILPKSQIFDRIWG-FDSDTTISVVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++SK+RKKL+ + + R +GY Sbjct: 192 VYVSKIRKKLKGTSFAKNLQTLRSVGY 218 >gi|160894802|ref|ZP_02075576.1| hypothetical protein CLOL250_02352 [Clostridium sp. L2-50] gi|156863233|gb|EDO56664.1| hypothetical protein CLOL250_02352 [Clostridium sp. L2-50] Length = 226 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/202 (21%), Positives = 92/202 (45%), Gaps = 3/202 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D ++++ A+ G G E +A D+ ++ L G G Sbjct: 4 IAVVEDEDMMREELEAILQKAGYQTSGITDFENAAAAILAASPDLVLLDLNLPGMGG--F 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R ++ S +P++ ++ LQ L D G D+ + KP +LARV+ + +R + Sbjct: 62 QICRELKQKSSIPVLVLTSRDQLQDELHALDLGADEFLTKPCRKERLLARVSNVLKRYEG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 NN E + + LP+ + +IL + + V K ++ A++G Sbjct: 122 RNNLLEGNGFLLDRQTYTLYIHNRSVILPQNQGKILGIFLEHGSDIVTKEELCIALWGT- 180 Query: 182 DEAVEENVVESHISKLRKKLRN 203 E ++EN ++ ++++L+K + N Sbjct: 181 AEFIDENALQVNLTRLKKTMAN 202 >gi|154685042|ref|YP_001420203.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154350893|gb|ABS72972.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 228 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 8/142 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123 IR +P+I +S + SG DD + KP + E++ARV + RR K N Sbjct: 68 IREERNLPIIMLSAKSEDMDKIQGLASGADDYLTKPFNPLELIARVKSQLRRYKKYNTDT 127 Query: 124 ----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N E G + V +D R V+G+ L +E ILE L N+G ++ +I+ A++ Sbjct: 128 ISTANVIEIGDLTVNTDTRQVWVRGKEVRLTPKEFDILELLSRNKGIVMSVEKIYEAVWK 187 Query: 180 LFDEAVEENVVESHISKLRKKL 201 D +N V HI+K+R K+ Sbjct: 188 -EDFFKSDNTVMVHITKIRDKI 208 >gi|46810476|gb|AAT01619.1| PhoB [Pseudomonas stutzeri] Length = 229 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/213 (23%), Positives = 101/213 (47%), Gaps = 24/213 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 +++DD A +++ + + + G++ LE E Q+ A + D+ ++ L Sbjct: 6 ILIVDDEAPIREMIVV-----ALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWML--P 58 Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ + P+I ++ + + G DD + KP RE++AR+ Sbjct: 59 GTSGIELARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR ++ + PI + DP + G+ + E R+L++ M ++ + Sbjct: 119 AVLRRATPVDSES---PIEIGGLLLDPVSHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++Q+ ++G + VEE V+ HI +LRK L Sbjct: 176 TRSQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207 >gi|90423521|ref|YP_531891.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90105535|gb|ABD87572.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB18] Length = 223 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 20/138 (14%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPI------RVFSDGRDPEVQ 143 D+G DD V KP E++AR A+ RRL + G + R G+DP V Sbjct: 91 LDNGADDYVAKPFEPIELVARAKAVLRRLFLDKGAVVSIGNLSYDIINRAVYVGQDPIV- 149 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 +PRRE ILE ++ G+ V + + A YG FD+ ++ N VESH+S+LR++ R Sbjct: 150 -----VPRRELAILEAMVRRVGRVVLRETLEVAAYG-FDDDIQSNAVESHVSRLRRRFRE 203 Query: 204 ---KLGFDPVDSKRFLGY 218 K+ PV R LGY Sbjct: 204 ANCKVTIRPV---RGLGY 218 >gi|75762016|ref|ZP_00741930.1| Alkaline phosphatase synthesis two-component response regulator phoP [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490502|gb|EAO53804.1| Alkaline phosphatase synthesis two-component response regulator phoP [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 207 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 12/139 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNR--AET--------GPIRVFSDGRDPEVQ 143 G DD + KP RE++ARV AI RR K+ AE +++ + + Q Sbjct: 64 GADDYMTKPFSPREVVARVKAILRRTKLQQEEQVAEAPDEDSITIAELKILPEFYEAYFQ 123 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-R 202 G L +E +L YL N+ + + + Q+ SA++ +D A + +V+ HIS LR K+ + Sbjct: 124 GRKLELTPKEFELLVYLAKNKSRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQ 182 Query: 203 NKLGFDPVDSKRFLGYSID 221 N + + R LGY ++ Sbjct: 183 NTKKPTYIKTIRGLGYKLE 201 >gi|228925839|ref|ZP_04088923.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944403|ref|ZP_04106776.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815305|gb|EEM61553.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228833854|gb|EEM79407.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 242 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 79 ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 135 Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + D V E L E +L + + +++ Q+ I+G Sbjct: 136 TNQHAQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 195 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D+ K G W Sbjct: 196 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 237 >gi|162453154|ref|YP_001615521.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] gi|161163736|emb|CAN95041.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] Length = 234 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 99/213 (46%), Gaps = 25/213 (11%) Query: 31 SLEFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LELPRIIRAHSQVPLIGIS 79 +L+ E + ++ + +A+EA G + V LE+ R +RA S+ P++ +S Sbjct: 21 ALQKEGYAVTAVADGRAAVEAAGAGTVDLVVLDVMLPELDGLEVCRRLRAGSRTPILFLS 80 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---------SNNRAET-- 128 + + G DD + KP RE++ARV A+ RR + + RA Sbjct: 81 ARADEVDRIVGLELGGDDYLTKPFSPRELVARVRALLRRTEAPPPAPAPASTGARAAVLR 140 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 GPI V ++ + G+ L E +L L+ G +++ Q+ Y +D + E Sbjct: 141 HGPIEVDTERHEARYLGQPVSLTATELGVLGALLERPGVVLSRGQLMQRAY-RYDNLITE 199 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++H+ ++R K R +G DP+ + +GY + Sbjct: 200 RTIDTHVRRIRAKFR-VVGGDPIATVHGVGYKL 231 >gi|163815716|ref|ZP_02207088.1| hypothetical protein COPEUT_01897 [Coprococcus eutactus ATCC 27759] gi|158449021|gb|EDP26016.1| hypothetical protein COPEUT_01897 [Coprococcus eutactus ATCC 27759] Length = 220 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 3/158 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IRA P++ ++ + ++ G DD ++KP E+ AR+ A RR Sbjct: 61 ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120 Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ R G + + + V + PL + E I E+L NRG+ +K QI ++G Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELPLTKAEYEICEFLAKNRGQVFSKEQILEEVFG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD ++ + +HI +R K + + P+ + +GY Sbjct: 180 FDSESNDSTIITHIKNIRVKFAD-YDYTPIKTVWGIGY 216 >gi|221067401|ref|ZP_03543506.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220712424|gb|EED67792.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 82/159 (51%), Gaps = 4/159 (2%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R R SQVP++ ++ S++ + + G DD + KP + E+LARV + RR + Sbjct: 64 RRFRERSQVPVLFLTARDSVEDRVKGLELGADDYLIKPFSYAELLARVRTLLRRTPMRQQ 123 Query: 125 RA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182 + + V R G+ L +E +L+ L+ ++G+ ++++QI S ++ + FD Sbjct: 124 DIFQLADLEVDMLKRRAIRGGQRIDLTNKEFALLQLLLQHKGEVMSRSQIASQVWDMNFD 183 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVV+ I +LR K+ + + + R +GY I+ Sbjct: 184 S--DTNVVDVAIRRLRAKIDDGFAVKLIQTVRGMGYRIE 220 >gi|325519076|gb|EGC98569.1| OmpR family two-component system response regulator [Burkholderia sp. TJI49] Length = 220 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 12/162 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + R +P I I+ + + DSG DD + KP E+LAR+ A+ RR Sbjct: 63 LASLRRRDETLPAIIITARDGVPDRIAGLDSGADDYLVKPFVLEELLARIRAVNRR---H 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 RA+T G +R+ + + PL +E +L LM + G +++ Q +Y Sbjct: 120 AGRAQTTLAIGALRLDPVKHQVWLNDDEVPLSPKEFVLLHELMRDPGAVISREQFEERLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E +E N V+ HI LRK KLG D + + R +GY I Sbjct: 180 S-WGEEIESNAVQVHIHNLRK----KLGHDMIRTVRGVGYRI 216 >gi|317132005|ref|YP_004091319.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469984|gb|ADU26588.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 232 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 98/233 (42%), Gaps = 23/233 (9%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-SSAREDVSAIEAFLI-GKGE 58 + V+ DD ALV G DG + S+ E W S R D+ ++ L G G Sbjct: 4 LLVVEDDPALVT-GLRYSMEKDGFQVRTAGSVR-EGWQAFSQDRPDLVVLDVGLPDGTG- 60 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +L R IR + P++ ++ + D G DD + KP RE+L+RV A+ RR Sbjct: 61 --FDLCRQIRVENGTPILFLTACDEETQVVMGLDMGGDDYITKPFRLRELLSRVRALLRR 118 Query: 119 LKVSNNRAETGPIRVFSDGR---DPEV-----QGEVFPLPRRERRILEYLMANRGKRVAK 170 + P++ G D E GE L E R+L LM N G+ + + Sbjct: 119 -------SADKPVKTLVSGAVTLDTEEAHVCRNGEEISLTPAEYRLLRLLMQNEGRTLTR 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 Q+ ++ + V+EN + +I +LR K+ + PV G W Sbjct: 172 EQLLDTLWDSGGDFVDENTLSVYIRRLRAKIEDNPS-SPVHIHTVRGVGYRWK 223 >gi|240172200|ref|ZP_04750859.1| two component response transcriptional regulatory protein prra [Mycobacterium kansasii ATCC 12478] Length = 233 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 15/207 (7%) Query: 23 GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75 G+ L GF +++ E L+S+ + +A ++ VL+ ++ A + VP+ Sbjct: 26 GLRLSGFEVSTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET---GPI 131 +S S+ + ++G DD + KP E++ARV A+ RR + + +ET GP+ Sbjct: 83 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPL 142 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V GR V G L +RE +L L ++ +++ Q+ ++G +D A + NVV+ Sbjct: 143 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 201 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 I LR+KL G + + R +G+ Sbjct: 202 VFIGYLRRKLEANGGPRLLHTVRGVGF 228 >gi|256833265|ref|YP_003161992.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686796|gb|ACV09689.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 236 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 11/137 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQ--GEVFPL 149 G DD V KP E++AR+ AI RR ++ +N A + D EV+ G V L Sbjct: 97 GGDDYVTKPFSLEEVVARIRAILRRTNHQIDDNDAVLSYADLDMDEDSHEVRRAGVVVDL 156 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD- 208 E ++L YLM N G+ ++K QI ++ +D + N+VES+IS LR+K+ D Sbjct: 157 SPTEFKLLRYLMLNSGRVLSKQQILDHVWD-YDWGGDANIVESYISYLRRKIDAVTQPDG 215 Query: 209 -PVD----SKRFLGYSI 220 PV +KR +GY + Sbjct: 216 SPVQPLIHTKRGVGYML 232 >gi|260589748|ref|ZP_05855661.1| DNA-binding response regulator [Blautia hansenii DSM 20583] gi|331083179|ref|ZP_08332295.1| hypothetical protein HMPREF0992_01219 [Lachnospiraceae bacterium 6_1_63FAA] gi|260539988|gb|EEX20557.1| DNA-binding response regulator [Blautia hansenii DSM 20583] gi|330404568|gb|EGG84108.1| hypothetical protein HMPREF0992_01219 [Lachnospiraceae bacterium 6_1_63FAA] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 14/162 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR SQ+P++ IS + G DD V KP + A++ A+ RR + Sbjct: 67 IRKISQIPVLFISSASDNMNIVMAIQMGGDDFVAKPFDLSVLTAKIQALLRR-----SYD 121 Query: 127 ETGPIRVFSDG----RDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 TG + V E Q E L + E RIL+ LM N+GK V++ ++ ++ Sbjct: 122 YTGQVSVLEHKGALLNTAEAVLFYQDEKIELTKNEYRILQTLMENKGKIVSRERLMEKLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+EN + ++++LRKKL D + +K +GY+I Sbjct: 182 E-NDSFVDENTLSVNVNRLRKKLAQAGLSDFITTKVGMGYTI 222 >gi|170760362|ref|YP_001785656.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407351|gb|ACA55762.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 230 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 9/164 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S++P+I IS S + ++G DD + KP + I+A++ + RR Sbjct: 66 RKIRQKSKIPIIFISARDSGMDQVMALENGADDYIIKPFYCDVIMAKIKSHIRRAFGEYA 125 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 KV E ++ + + + E + E + ++E +LE+LM K V + + I+ Sbjct: 126 PKVDEKIVELQGLKFYKERSEIEFRDERVIITKKEGILLEHLMKKYPKVVNRDFLLEKIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 E VEEN + ++S++RK+L +KLG D +++ R +GY ++ Sbjct: 186 DDI-EFVEENTLNVNVSRIRKRL-HKLGIEDGIETVRGVGYRLN 227 >gi|325520568|gb|EGC99646.1| two component transcriptional regulator, winged helix family protein [Burkholderia sp. TJI49] Length = 219 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 21/174 (12%) Query: 57 GEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ +L R +R A VP++ ++ ++ + D G DD + KP E+LAR A+ Sbjct: 56 GKSGTQLLRALREAGDTVPVLVLTARGNVADRVSGLDDGADDYLAKPFDLSEVLARCRAL 115 Query: 116 YRRLKVSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RR S RA T + + RD L RE IL L+++ G Sbjct: 116 VRR---SQGRAGDEIVWRDITIDLGTHTVTRDA----ARIALTAREWAILVQLVSHPGIP 168 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ ++ +YG + E +E N +E H+S LRK KLG D + + R +GY +D Sbjct: 169 QSRARLEDGLYG-WQEGLESNAIEVHVSNLRK----KLGADLIRTVRGIGYVVD 217 >gi|229120301|ref|ZP_04249551.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228663111|gb|EEL18701.1| Two-component response regulator [Bacillus cereus 95/8201] Length = 242 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 79 ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 135 Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + D V E L E +L + + +++ Q+ I+G Sbjct: 136 TNQHAQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 195 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D+ K G W Sbjct: 196 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 237 >gi|225570310|ref|ZP_03779335.1| hypothetical protein CLOHYLEM_06406 [Clostridium hylemonae DSM 15053] gi|225160842|gb|EEG73461.1| hypothetical protein CLOHYLEM_06406 [Clostridium hylemonae DSM 15053] Length = 228 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 8/164 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 L+L + IR S VP++ I+ + + G DD + KP + ARV+A+ RR Sbjct: 60 LDLCKKIREFSHVPILMITARDMEMDEVMCLECGADDYIAKPFSLAVLKARVSALSRRYV 119 Query: 119 LKVSNNRA-ETGPIRVFSDGRDPEV-QGE-VFPLPRRERRILEYLMANRGKRVAKTQIFS 175 LK + R +G I + DG + + +G+ L E R+L+Y + N+ + + K QI Sbjct: 120 LKTGSKRLLVSGDISI--DGAEMKAYKGDRALDLSLTEFRLLKYFLENKNQVLLKEQILE 177 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 ++ + VEEN + +I +LR+KL N + + + +GY Sbjct: 178 YVWDMGGTFVEENTLTVNIGRLRRKLETNSSSTEYIKTIHGMGY 221 >gi|219556768|ref|ZP_03535844.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis T17] gi|289568870|ref|ZP_06449097.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis T17] gi|289542624|gb|EFD46272.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis T17] Length = 236 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 5/152 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET- 128 + VP+ +S S+ + ++G DD + KP E++ARV A+ RR + + +ET Sbjct: 81 NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETI 140 Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 GP+ V GR V G L +RE +L L ++ +++ Q+ ++G +D A + Sbjct: 141 TVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAAD 199 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 NVV+ I LR+KL G + + R +G+ Sbjct: 200 TNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGF 231 >gi|220933353|ref|YP_002512252.1| two component transcriptional regulator, winged helix family [Thioalkalivibrio sp. HL-EbGR7] gi|219994663|gb|ACL71265.1| two component transcriptional regulator, winged helix family [Thioalkalivibrio sp. HL-EbGR7] Length = 226 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 3/162 (1%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRR 118 LE+ R +RA +VP++ ++ Q + ++G DD + KP H E++ A R Sbjct: 60 LEVIRRLRAGGGKVPVLILTARSQWQEKVQGLEAGADDYLAKPFHMEELVARIRALARRA 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ R GP+ + + + GE L E R+LEYL + G+ V+K + +Y Sbjct: 120 AGSADGRLALGPLVLDTAAQAVSRNGEPVSLTTFEYRVLEYLARHAGQVVSKQTLTDYLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D+ + NV+E I +LRKKL P+++ R GY + Sbjct: 180 A-HDDDRDSNVLEVLIGRLRKKLDPDGSLTPIETLRGRGYRL 220 >gi|15894794|ref|NP_348143.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15024464|gb|AAK79483.1|AE007662_1 Response regulator (CheY-like receiver domain and HTH DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325508932|gb|ADZ20568.1| Response regulator (CheY-like receiver domain and HTH DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 229 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 87/165 (52%), Gaps = 7/165 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S+VP+I IS S + ++G DD + KP + ++A++ + RR+ Sbjct: 65 RDIRTISKVPIIFISARDSDMDQVMAIENGADDYITKPFSYDVLMAKIKGVLRRVYGSYS 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V+N E + ++ + E + + L ++E ++L L+ N K V++ + ++ Sbjct: 125 NNVNNEVFEAKGLFLYINQSMIEYEDKKIELSKKEFQLLYSLIKNADKIVSRETLLDILW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D V++N + +++++RK+L + ++ +++KR GY I+ N Sbjct: 185 NDVD-FVDDNTLSVNMTRVRKRLESIGIYNAIETKRGQGYKINVN 228 >gi|320184189|gb|EFW59005.1| Two-component system response regulator QseB [Shigella flexneri CDC 796-83] Length = 219 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 L---REWREKGQREPVLILTTRDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + R + E L +E +LE LM N G+ + + I +Y Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLASEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|297530122|ref|YP_003671397.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297253374|gb|ADI26820.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 226 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 7/152 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R IR+ S VP++ ++ + G DD V KP E+LAR+ A+ RR Sbjct: 62 ETCRRIRSFSNVPIMMVTARDETADIVQGLKIGADDYVAKPFDEAELLARIEAVLRR--T 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R+ + D + V+ E P L +E IL L+ + + ++ QI ++++G Sbjct: 120 AGGRSAIRAAGLVWDEEEHTVRYEDKPIALTPKEFAILGLLLKHPNQVFSRGQIIASLWG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 + EE V+SH+ +R+KLR K GF P D Sbjct: 180 YLAD-TEERTVDSHMKNIREKLR-KAGF-PAD 208 >gi|291547005|emb|CBL20113.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 229 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/205 (24%), Positives = 98/205 (47%), Gaps = 9/205 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ + + EE L+ + + I L+ LE Sbjct: 6 LVVDDEKLIVKGLRFSLEQDGMEVDC--AYDGEEALEKAKAGEYDIILLDLMLPKMDGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S VP+I ++ + + G DD V KP + E+ AR+ AI RR Sbjct: 64 VCQQIREFSNVPIIMLTAKGEDMDKILGLEYGADDYVTKPFNILEVKARIKAIIRRAGSK 123 Query: 123 NNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ E G +++ +GR + G+ L +E +LE L+ N K ++ + + Sbjct: 124 QDKQEKAKTVEVGELKLDCEGRRVFISGKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++G ++ + V+ HI +LR+K+ Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKI 207 >gi|302878086|ref|YP_003846650.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] gi|302580875|gb|ADL54886.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] Length = 221 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R + + VP++ ++ S+ + D+G DD + KP E+ AR+ A+ RR K Sbjct: 63 LRRTRTSKNPVPILILTARDSVADRVAGLDAGADDYLIKPFDLGELQARLRALVRRAKSQ 122 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + GR + G L RE IL L+ N G+ ++K Q+ +YG + Sbjct: 123 IEPVIAHGALYLDPAGRSVTLAGRSVELSAREFAILHELLLNAGRVLSKAQLEEKLYG-W 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E +E N VE + LR+KL L + + R +GY I Sbjct: 182 GEEIESNAVEVFVHHLRRKLAPDL----IRTVRGVGYMI 216 >gi|167761217|ref|ZP_02433344.1| hypothetical protein CLOSCI_03622 [Clostridium scindens ATCC 35704] gi|167660883|gb|EDS05013.1| hypothetical protein CLOSCI_03622 [Clostridium scindens ATCC 35704] Length = 231 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 6/146 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R S +P+I +S + D+G DD V KP + E++AR+ A R+ Sbjct: 64 MEVIKSVREVSDIPIIVVSARQEEGEKIQALDAGADDYVTKPFYMGELMARIRAGLRKTG 123 Query: 121 VSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + TG + V + R V+GE L E +IL L+ANRGK + I Sbjct: 124 TARQEEIMTVFSTGSLTVDYEKRKVLVEGEEVHLTPIEYKILLLLIANRGKVLTHNYIIR 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 I+G + E ++ + ++ LR+K+ Sbjct: 184 EIWG-YAEDIDAGNLRVFMATLRRKI 208 >gi|11465394|ref|NP_045215.1| Ycf27 [Cyanidium caldarium] gi|14548002|sp|Q9TLQ4|YCF27_CYACA RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|6466297|gb|AAF12879.1|AF022186_1 unknown [Cyanidium caldarium] Length = 249 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 17/163 (10%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123 IR S +P+I ++ + + + G DD V KP RE+ AR+ +I RR++ N Sbjct: 77 IRKESDIPIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELEARIQSILRRIQTRNAKL 136 Query: 124 ------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N +TG + + + + E+ L E +LE L++ GK ++++I + Sbjct: 137 KPYDNINLFKTGSLNIDLEKKQIYKNNELIRLTEMEFSLLELLVSQSGKAFSRSKILKEV 196 Query: 178 YGL----FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 +G + + +V+ HIS+LR KL + DP + L Sbjct: 197 WGYKLSKHEPIADTRIVDVHISRLRAKLED----DPTNPTLIL 235 >gi|329121388|ref|ZP_08250013.1| phosphate regulon response regulator [Dialister micraerophilus DSM 19965] gi|327469678|gb|EGF15145.1| phosphate regulon response regulator [Dialister micraerophilus DSM 19965] Length = 234 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 97/186 (52%), Gaps = 13/186 (6%) Query: 45 DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D+ ++ L G+ G VL+ R +S +P++ ++ S + DSG DD + KP Sbjct: 47 DLILLDIMLPGEDGLCVLKKLRNTNEYSTIPIVMMTAKTSEYDIVKGLDSGADDYITKPF 106 Query: 104 HHREILARVAAIYRRLKVSNNRAETGP-IRVFSDGRDPEVQ-------GEVFPLPRRERR 155 E+++RV ++ RR N ++ P I + + E + EVF L +E + Sbjct: 107 GIMELISRVKSLLRRSNYGKNTSKEEPKILKYKNTIIDEAKHVVTENGKEVF-LTLKEFK 165 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 +L+YL+ N+G +++ +I A++ E +E V+ HI LRKK+++ + +++ R Sbjct: 166 LLQYLVINKGIVLSRDRIMEAVWDSPIE-IESRTVDMHIKGLRKKIKDCDKY--INTVRG 222 Query: 216 LGYSID 221 +GY ++ Sbjct: 223 IGYRLE 228 >gi|325523567|gb|EGD01867.1| two component transcriptional regulator [Burkholderia sp. TJI49] Length = 220 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 IDVLRTLRARGLSLPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 118 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+E+ G + + + G L RE +LE L+A G ++K+Q+ Sbjct: 119 --QAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 177 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 216 >gi|109453312|gb|ABG34136.1| PhoP [Salmonella enterica subsp. diarizonae] gi|109453316|gb|ABG34138.1| PhoP [Salmonella enterica subsp. diarizonae] gi|109453318|gb|ABG34139.1| PhoP [Salmonella enterica subsp. diarizonae] Length = 213 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 5/212 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ ++ + D++ ++ L E L Sbjct: 4 LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R+ +P++ ++ Q ++ SG DD V KP H E++AR+ A+ RR Sbjct: 62 LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ V EV L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E E + ++ + +LRKK++ + D + + Sbjct: 181 DAELRESHTIDVLMGRLRKKIQTQYPHDVITT 212 >gi|56420875|ref|YP_148193.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380717|dbj|BAD76625.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 228 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 83/154 (53%), Gaps = 20/154 (12%) Query: 65 RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R IRAHS VP++ +S D+P+ + G DD + KP H ++A++ A+ RR+ Sbjct: 64 RQIRAHSNVPILFLSSRDHPT--DMVMSMQLGADDYIQKPFHFDVLIAKIQALLRRVYNY 121 Query: 123 NNRAETGPIRVFS------DGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GPI++ + D V E L + E IL++L+A + + VA+T++ Sbjct: 122 N----AGPIQLQTWCGATVDYEKSTVSNEHGTVELTKNELLILKHLLAKKNQIVARTELI 177 Query: 175 SAIYGLFDEA-VEENVVESHISKLRKKLRNKLGF 207 ++ DE V +N + ++++LRKKL ++LG Sbjct: 178 KRLWE--DERFVSDNTLTVNVNRLRKKL-DELGL 208 >gi|296169659|ref|ZP_06851277.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895656|gb|EFG75352.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 236 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 15/207 (7%) Query: 23 GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75 G+ L GF +++ E L+S+ + +A ++ VL+ ++ A + VP+ Sbjct: 29 GLRLSGFEVSTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 85 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET---GPI 131 +S S+ + ++G DD + KP E++ARV A+ RR + + +ET GP+ Sbjct: 86 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGPL 145 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V GR V G L +RE +L L ++ +++ Q+ ++G +D A + NVV+ Sbjct: 146 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 204 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 I LR+KL G + + R +G+ Sbjct: 205 VFIGYLRRKLEANGGPRLLHTVRGVGF 231 >gi|295134400|ref|YP_003585076.1| two-component system response regulator [Zunongwangia profunda SM-A87] gi|294982415|gb|ADF52880.1| two-component system response regulator [Zunongwangia profunda SM-A87] Length = 225 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 3/163 (1%) Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LEL + +++ + + +I +S SL L + G DD + KP + E+ AR+ A+ RR Sbjct: 60 LELLQYLKSQNLMDAVIIVSAKDSLDDKLKGLELGADDYLPKPFYMAELNARIKAVLRRK 119 Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 NN + +F + R +++ + L R+E IL YL+AN+ + V K + ++ Sbjct: 120 NFEGNNTIKLANTEIFPEQRRVKIKNKEVELNRKEFDILMYLVANKERLVRKPSLAEHVW 179 Query: 179 G-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D+A + S I LRKKL+ + + +GY + Sbjct: 180 GDNIDQADSFEFIYSQIKNLRKKLKTHHSALNIKAVYGIGYKL 222 >gi|212712838|ref|ZP_03320966.1| hypothetical protein PROVALCAL_03935 [Providencia alcalifaciens DSM 30120] gi|212684530|gb|EEB44058.1| hypothetical protein PROVALCAL_03935 [Providencia alcalifaciens DSM 30120] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 105/224 (46%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G ++ + ++ + + D++ ++ L E L Sbjct: 3 ILIVEDNALLRHHLTVQLKELGHQVDSAEGAKEADYFLNESHPDIAVVDLGL--PDEDGL 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + R+ H +PL+ ++ S Q + +SG DD V KP E++AR+ A+ RR Sbjct: 61 SMIKRWRSNHVSIPLLVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMRRNS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ E + ++ V GE L E I+E L+ N GK V+K + +Y Sbjct: 121 GLASQVLELENFVIDLSRKEFTVNGESVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E E + ++ + +LRKK++ + + + R GY D N Sbjct: 181 -DAELRESHTIDVLMGRLRKKIQQFHAQEVIVTVRGQGYRFDVN 223 >gi|212639803|ref|YP_002316323.1| OmpR family transcriptional regulator (REC-wHTH) [Anoxybacillus flavithermus WK1] gi|212561283|gb|ACJ34338.1| Transcriptional regulator OmpR family (REC-wHTH) [Anoxybacillus flavithermus WK1] Length = 223 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 3/137 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--N 124 +R SQVP+I ++ + G DD + KP E++ARV A+ RR K ++ Sbjct: 67 VRERSQVPIIFLTARSDEWDRVYGLQIGADDYIVKPFSPNEVVARVHAVLRRTKGTDVTT 126 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E GPI + R +V G+ L +E +L + +RG+ + Q+ ++G+ Sbjct: 127 SYEAGPIVIDEKARKVKVNGKPVVLTLKEFELLTLFVKHRGQVFTREQLLDRVWGIHYVG 186 Query: 185 VEENVVESHISKLRKKL 201 V++HI LR KL Sbjct: 187 -STRTVDTHIKTLRIKL 202 >gi|163758770|ref|ZP_02165857.1| probable two-component response regulator protein [Hoeflea phototrophica DFL-43] gi|162284060|gb|EDQ34344.1| probable two-component response regulator protein [Hoeflea phototrophica DFL-43] Length = 225 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 80/155 (51%), Gaps = 7/155 (4%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 + + P + ++ + + ++ F++G DD + KP E+ ARV A+ RR + + + + Sbjct: 69 SKNTTPALFLTALGEVDSRVEGFEAGGDDYLTKPFAFVELSARVNALGRRREGTQDSEPS 128 Query: 129 ----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDE 183 +++ R E QG+ L +E ++LEY M G+ V +T + ++ + FD Sbjct: 129 VLHYAGLKLDLLARSCERQGQPIDLMAKEFKLLEYFMRRPGRLVTRTMLLEQVWDMSFDP 188 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +VVE+HIS+LR K+ + + ++R GY Sbjct: 189 TT--SVVETHISRLRAKVDKPFDEELIRTRRGEGY 221 >gi|15612935|ref|NP_241238.1| two-component response regulator [Bacillus halodurans C-125] gi|10172985|dbj|BAB04091.1| two-component response regulator [Bacillus halodurans C-125] Length = 222 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 5/145 (3%) Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IR V P+I ++ S+ + D G +D + KP E+LARV A R + Sbjct: 61 LEVLRRIRMTDPVTPIILLTARNSIPDKVSGLDLGANDYITKPFEIEELLARVRACLRTV 120 Query: 120 KVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +T + + RD + E L +E +L + + N+G+ +++ QI + Sbjct: 121 QTRERVEDTLMFQELTINEKTRDVQRGNETIELTPKEFELLVFFIKNKGQVLSREQILTN 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++G FD + NV++ ++ LRKKL Sbjct: 181 VWG-FDYYGDTNVIDVYVRYLRKKL 204 >gi|57207865|dbj|BAD86532.1| hypothetical protein [Staphylococcus aureus] Length = 232 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 88/202 (43%), Gaps = 21/202 (10%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + + K Y A+ G E LE ++W D+ ++ L G K E+ + + Sbjct: 22 KIIKKSKYYAIPAYSGT--EALLYLENKQW-------DLVLLDLMLPGISGK--EVLKQV 70 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R HS P+I IS Q + G DD ++KP E+ AR+ A+ RR + S Sbjct: 71 REHSSTPVIIISAKNESQYKITSLRMGADDYISKPFDIEEVAARIDALLRRYQKSEREKN 130 Query: 128 TGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T I + D + V L RE +IL+ LM N K +K +F ++ Sbjct: 131 TSNQELVFLDIVLNIDSQKVIVNNFEVTLTLREFKILQLLMENPQKIYSKANLFETVWE- 189 Query: 181 FDE-AVEENVVESHISKLRKKL 201 D+ +EN V H+S LR KL Sbjct: 190 -DKFHGDENTVNVHMSNLRNKL 210 >gi|30248529|ref|NP_840599.1| response regulator baeR [Nitrosomonas europaea ATCC 19718] gi|30138415|emb|CAD84425.1| possible baeR; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Nitrosomonas europaea ATCC 19718] Length = 229 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 18/179 (10%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD 89 LE WL+ + V I L+ G L++ R IR+ SQVP+I ++ L Sbjct: 33 QGLEVIPWLKENT---VELILLDLMVPGRDGLDICRDIRSFSQVPVIIVTARIEEIDRLL 89 Query: 90 FFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETG------PIRVFSDGRDPEV 142 + G DD + KP RE++ARV A+ RRL+ + N A+ +V DGR+ E+ Sbjct: 90 GLEMGADDYICKPFSPREMVARVKAVLRRLQPPAPNSAQQALTLSPQSFKVQYDGREIEL 149 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 F ++L L G+ ++ ++ IY V + ++SHI KLRKK+ Sbjct: 150 TAVEF-------QLLYTLYQQPGRIFSRARLMDLIYQ-DQRIVSDRTIDSHIKKLRKKI 200 >gi|332980939|ref|YP_004462380.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332698617|gb|AEE95558.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 227 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 7/144 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR SQVP+I ++ L FD GVDD V KP +E++ARV A+ +R + N Sbjct: 67 RQIRQGSQVPIIMLTARGEENDKLFGFDLGVDDYVVKPFSPKELVARVKALLKRSR-GNA 125 Query: 125 RAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 A+ I+ S +P + E L +E +L +L ++ G+ ++ Q+ ++G Sbjct: 126 NAQDRVIKYESLSIEPLSRRVTINDEDIILTPKEFDLLFFLASHPGQVFSREQLLHHVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRN 203 +D + V++H+ LR KL N Sbjct: 186 -YDFYGDSRTVDAHVKNLRSKLGN 208 >gi|289550049|ref|YP_003470953.1| Two-component response regulator colocalized with HrtAB transporter [Staphylococcus lugdunensis HKU09-01] gi|315659323|ref|ZP_07912187.1| hemin DNA-binding response regulator [Staphylococcus lugdunensis M23590] gi|289179581|gb|ADC86826.1| Two-component response regulator colocalized with HrtAB transporter [Staphylococcus lugdunensis HKU09-01] gi|315495748|gb|EFU84079.1| hemin DNA-binding response regulator [Staphylococcus lugdunensis M23590] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/225 (22%), Positives = 110/225 (48%), Gaps = 14/225 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 +++DD + D + ++G G +L+F E Q + D++ ++ + G Sbjct: 5 LIVDDDQTILDYVASHLNNEGYHTYTKPSGTAALQFLE--QQTV--DIAIVDIMMAGMDG 60 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL + I+ +P+I ++ +L F SG DD V KP +E++ R+ A+ RR Sbjct: 61 --FELCQQIKLDFDLPVIMLTARDALTDKERAFLSGTDDYVTKPFEIKELIFRIKAVLRR 118 Query: 119 LKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSA 176 +++ + G + + + + +V + LP++E ++L Y++ + K+V + + Sbjct: 119 YQINAEHIIQLGNLTLNDNYMEVQVDHKTMTLPKKEFQLL-YMLTSHPKQVFLRDTLIEK 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G FD +E ++ HI +LR++L + + R GY ++ Sbjct: 178 VWG-FDYEGDERTLDVHIKRLRQRLSKLAANVTITTVRGQGYKVE 221 >gi|163745626|ref|ZP_02152986.1| Two-component transcriptional regulator, winged helix family protein [Oceanibulbus indolifex HEL-45] gi|161382444|gb|EDQ06853.1| Two-component transcriptional regulator, winged helix family protein [Oceanibulbus indolifex HEL-45] Length = 223 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 6/165 (3%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L + +R A + P++ ++ +++ +D ++G DD + KP E+ ARV A+ RR Sbjct: 60 LTLLKTLRGAGNATPVLLLTAMGAVEDRIDGLNAGADDYLVKPFAFGELSARVNALARRP 119 Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G + + R G+ L RE +LE+L+ +G+ +T + A+ Sbjct: 120 QALEQETTLRAGNLTMDLISRRVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAV 179 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + FD NVVE+HIS+LR K+ + + + R GY I+ Sbjct: 180 WDISFDPMT--NVVETHISRLRAKVDRPFDVELIQTVRGAGYRIE 222 >gi|30262227|ref|NP_844604.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527505|ref|YP_018854.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49185067|ref|YP_028319.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65319516|ref|ZP_00392475.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165872233|ref|ZP_02216871.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167632884|ref|ZP_02391210.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167641072|ref|ZP_02399328.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686369|ref|ZP_02877590.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708398|ref|ZP_02898841.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650825|ref|ZP_02933722.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567848|ref|ZP_03020759.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033952|ref|ZP_03101363.1| DNA-binding response regulator [Bacillus cereus W] gi|196039761|ref|ZP_03107065.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046933|ref|ZP_03114154.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218903356|ref|YP_002451190.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227814973|ref|YP_002814982.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228927282|ref|ZP_04090343.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228945834|ref|ZP_04108178.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229121769|ref|ZP_04250990.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus 95/8201] gi|229601295|ref|YP_002866569.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684793|ref|ZP_05148653.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722202|ref|ZP_05183990.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254737239|ref|ZP_05194943.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743574|ref|ZP_05201259.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254751556|ref|ZP_05203593.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254759070|ref|ZP_05211097.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|300118053|ref|ZP_07055801.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|301053744|ref|YP_003791955.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30256858|gb|AAP26090.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502653|gb|AAT31329.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178994|gb|AAT54370.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712026|gb|EDR17565.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510970|gb|EDR86360.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167531696|gb|EDR94361.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126637|gb|EDS95521.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669445|gb|EDT20187.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083286|gb|EDT68347.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560903|gb|EDV14877.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195993632|gb|EDX57589.1| DNA-binding response regulator [Bacillus cereus W] gi|196022308|gb|EDX60994.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196029464|gb|EDX68067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218538518|gb|ACK90916.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227003622|gb|ACP13365.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228661685|gb|EEL17304.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus 95/8201] gi|228813816|gb|EEM60093.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228832358|gb|EEM77934.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229265703|gb|ACQ47340.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|298724364|gb|EFI65058.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|300375913|gb|ADK04817.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 227 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 17/205 (8%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQV-PLIGIS 79 LEFE + A+ A+E F G + +L E+ R IR + V P+I ++ Sbjct: 22 LEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNISGLEVLRRIRLKNAVIPIILLT 81 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFS 135 S+ + D G D + KP E+LAR+ A R V N+ + + + Sbjct: 82 ARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNVVKEEENSSYQIADLYLDE 141 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 R+ + + L RE +L +LM + + + + QI + ++G FD + NVV+ +I Sbjct: 142 KTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTNVWG-FDYYGDTNVVDVYIR 200 Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220 LRKK+ + + + R +GY + Sbjct: 201 YLRKKVDCNVDVPLIHTVRGVGYVL 225 >gi|284035664|ref|YP_003385594.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283814957|gb|ADB36795.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 231 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 13/149 (8%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LEL IR ++Q+P++ ++ S L F++G DD + KP E++ARV A+ RR Sbjct: 66 LELAEYIRTKNAQMPILMLTALDSTTDKLMGFEAGADDYLAKPFDFLELVARVRALLRR- 124 Query: 120 KVSNNRAETGPIRVFSD---GRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S E+ PI +D R +V G L RE +L+YL+ N+G+ V++ I Sbjct: 125 --SAPPEESQPILRLADLELDRQQKVARRAGRTIDLTAREFALLDYLLRNQGRVVSRVDI 182 Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKL 201 ++ + FD NV++ +++ LR K+ Sbjct: 183 AEQVWDVGFDTGT--NVIDVYVNYLRNKI 209 >gi|260575288|ref|ZP_05843288.1| two component transcriptional regulator, winged helix family [Rhodobacter sp. SW2] gi|259022548|gb|EEW25844.1| two component transcriptional regulator, winged helix family [Rhodobacter sp. SW2] Length = 219 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 6/151 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETG 129 + P+I ++ + +D ++G DD + KP E+ AR+ A+ RR + N + Sbjct: 71 AATPVIILTARDRITDRIDGLNAGADDYLVKPFDLAELSARIGAVARRYSGNPNPQVHLA 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + R L +RE I E L+ G V K QI +Y FD VE N Sbjct: 131 DLTIDLAARSITSPEGPIDLSQREWIIFEVLLQRPGTIVPKGQIEERLYS-FDAEVESNT 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E ++S+LRK KLG D +++ R +GY + Sbjct: 190 IEVYVSRLRK----KLGRDVIETVRGMGYRL 216 >gi|229161188|ref|ZP_04289175.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus R309803] gi|228622284|gb|EEK79123.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus R309803] Length = 227 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 95/206 (46%), Gaps = 19/206 (9%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQV-PLIGIS 79 LEFE + A+ A+E FL + +L E+ R +R + V P+I ++ Sbjct: 22 LEFEGYESEIAKTGTEAMEKFLNSSWDLILLDVMLPNISGLEVLRRVRLKNAVIPIILLT 81 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV---FSD 136 S+ + D G D + KP E+LAR+ A R+ + E + F D Sbjct: 82 ARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACL-RISHAIKEEEYSSFHIADLFLD 140 Query: 137 GRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 + EV+ V L RE +L +LM + + + + QI + ++G FD + NVV+ +I Sbjct: 141 EKTREVKRGNNVAELTPREFDLLHFLMKHENQVLNREQIVTNVWG-FDYYGDTNVVDVYI 199 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSI 220 LRKK+ + + + R +GY + Sbjct: 200 RYLRKKIDCNVDVPLIHTVRGVGYVL 225 >gi|50121372|ref|YP_050539.1| DNA-binding transcriptional regulator PhoP [Pectobacterium atrosepticum SCRI1043] gi|49611898|emb|CAG75347.1| two-component response regulator of virulence determinants [Pectobacterium atrosepticum SCRI1043] Length = 229 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/222 (22%), Positives = 102/222 (45%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L++ + G ++ + + ++ D++ ++ L E + Sbjct: 3 ILVVEDNVLLRHHLTVQMNEMGHQVDAASDAKEADYFLHENMPDIAIVDLGL--PDEDGM 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R RAH ++P++ ++ Q + ++G DD V KP H E++AR+ A+ RR Sbjct: 61 SMIRRWRAHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMRRNS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ P + R+ + L E I+E L+ N+GK V+K + +Y Sbjct: 121 GLASQIISLPPFEIDLSRRELMIHSAPIKLTAFEYTIIETLIRNKGKVVSKESLMLQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E + ++ + +LRKK++ D + + R GY D Sbjct: 181 -DAELRESHTIDVLMGRLRKKIQQADAQDVITTVRGQGYRFD 221 >gi|325273473|ref|ZP_08139717.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324101394|gb|EGB98996.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 231 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 14/164 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G++VL R +R S VP++ +S S +D D G +D V KP +E LARV A+ Sbjct: 63 GQQVL---RELREWSSVPVLVLSVRASELQKVDALDGGANDYVTKPFGIQEFLARVRALL 119 Query: 117 RRLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R++ + +A GP+ V R ++G L R+E +L L + G+ + + Q+ Sbjct: 120 RQVPQAGGSEVKASFGPLTVDFAFRRVTLEGVEVALTRKEYALLALLAGHPGRVMTQQQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216 I+G +V ++H ++ LR KLG DP + RF+ Sbjct: 180 LKDIWG------PSHVEDTHYLRIVVGHLRQKLGDDPT-APRFI 216 >gi|312128910|ref|YP_003996250.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] gi|311905456|gb|ADQ15897.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] Length = 223 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 14/186 (7%) Query: 31 SLEFEEWLQSSA---REDVSAIEAF---------LIGKGEKVLELPRIIRAHSQVPLIGI 78 SLE ++L SA +E + IE + ++ G + L I + +I + Sbjct: 19 SLEEAQYLVESASTFKEGLLKIEDYQYDAILLDLMLPDGNGLDLLSEIRSSQPNTSVIIL 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRAETGPIRVFSDG 137 S +++ + D G DD + KP H E+ +R+ +A+ RR + N+ E + ++ + Sbjct: 79 SAKDAVEDKVKGLDLGADDYLAKPFHLVELHSRLKSALRRRNQQGENKIEYKNLCLYPET 138 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVVESHISK 196 RD V G L R+E +L Y M G+ + +T + +++G D+A + + S I Sbjct: 139 RDFLVAGNHVALNRKEYDVLYYFMIRPGRLIQRTTLAESVWGDHIDQADSLDFIYSQIKN 198 Query: 197 LRKKLR 202 LRKKL+ Sbjct: 199 LRKKLK 204 >gi|109453254|gb|ABG34107.1| PhoP [Salmonella enterica subsp. enterica] Length = 213 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 5/212 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ ++ + D++ ++ L E L Sbjct: 4 LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R+ +P++ ++ Q ++ SG DD V KP H E++AR+ A+ RR Sbjct: 62 LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ V EV L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVINISPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E E + ++ + +LRKK++ + D + + Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHDVITT 212 >gi|41406932|ref|NP_959768.1| hypothetical protein MAP0834c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118465275|ref|YP_880280.1| PrrA family transcriptional regulator [Mycobacterium avium 104] gi|41395282|gb|AAS03151.1| hypothetical protein MAP_0834c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118166562|gb|ABK67459.1| two component response transcriptional regulatory protein prra [Mycobacterium avium 104] Length = 233 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 102/207 (49%), Gaps = 15/207 (7%) Query: 23 GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75 G+ L GF +++ E L+S+ + +A ++ VL+ ++ A + VP+ Sbjct: 26 GLRLSGFEVSTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET---GPI 131 +S S+ + ++G DD + KP E++ARV A+ RR + + +ET GP+ Sbjct: 83 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSETITVGPL 142 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V GR V G L +RE +L L ++ +++ Q+ ++G +D A + NVV+ Sbjct: 143 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 201 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 I LR+KL G + + R +G+ Sbjct: 202 VFIGYLRRKLEANGGPRLLHTVRGVGF 228 >gi|310780216|ref|YP_003968548.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309749539|gb|ADO84200.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 225 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 4/143 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I ++ + ++ D G DD + KP E+LAR+ R K Sbjct: 62 EVCRRIRKKSDVPVIVLTATDKTFSKINLLDLGADDYITKPFIIGELLARIRVALRHNKE 121 Query: 122 SNNRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++ + IR+ + + VQ E L + E +L YL+ NR +++ +I + I+ Sbjct: 122 FSDKGQVISYEGIRLDLNKKLVIVQEEEISLTKTEFNLLHYLILNREIVLSREKILNNIW 181 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D E +V+ +I LRKK+ Sbjct: 182 G-YDYNGGEKIVDVYIKSLRKKV 203 >gi|146329260|ref|YP_001209793.1| two-component copper resistance response regulator [Dichelobacter nodosus VCS1703A] gi|146232730|gb|ABQ13708.1| two-component copper resistance response regulator [Dichelobacter nodosus VCS1703A] Length = 229 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 7/165 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L + +RA + P++ +S + ++ +G DD + KP E+LARV ++ RR Sbjct: 60 LSLIQQLRAQGASTPVLILSALGEVDDRVEGLAAGGDDYLVKPYAFSELLARVQSLARRR 119 Query: 120 KVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + R G+ L RE R+LEYLM+N G+ V +T + Sbjct: 120 NTDVHDQMVLEIADLHLDRLRRKVTRAGKKINLQPREFRLLEYLMSNSGQVVTRTMLLEK 179 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ FD + NV++ HIS+LR K+ + ++R GYS+ Sbjct: 180 VWEYNFDP--QTNVIDVHISRLRSKIDKDFNPPLIHTERGAGYSM 222 >gi|15901469|ref|NP_346073.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|15903517|ref|NP_359067.1| DNA-binding response regulator [Streptococcus pneumoniae R6] gi|116516130|ref|YP_816903.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|148988676|ref|ZP_01820109.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|149001907|ref|ZP_01826861.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|149011512|ref|ZP_01832759.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|168487278|ref|ZP_02711786.1| response regulator [Streptococcus pneumoniae CDC1087-00] gi|168575180|ref|ZP_02721143.1| response regulator [Streptococcus pneumoniae MLV-016] gi|169833223|ref|YP_001695024.1| response regulator [Streptococcus pneumoniae Hungary19A-6] gi|225855061|ref|YP_002736573.1| response regulator [Streptococcus pneumoniae JJA] gi|225859389|ref|YP_002740899.1| response regulator [Streptococcus pneumoniae 70585] gi|225861461|ref|YP_002742970.1| response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|237649183|ref|ZP_04523435.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI 1974] gi|237822260|ref|ZP_04598105.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI 1974M2] gi|298229234|ref|ZP_06962915.1| DNA-binding response regulator [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254511|ref|ZP_06978097.1| DNA-binding response regulator [Streptococcus pneumoniae str. Canada MDR_19A] gi|303253986|ref|ZP_07340106.1| DNA-binding response regulator [Streptococcus pneumoniae BS455] gi|303258559|ref|ZP_07344539.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|303262649|ref|ZP_07348589.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|303263588|ref|ZP_07349510.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] gi|303266968|ref|ZP_07352843.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|303269868|ref|ZP_07355612.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|307068261|ref|YP_003877227.1| CheY-like receiver/winged-helix DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307127843|ref|YP_003879874.1| response regulator [Streptococcus pneumoniae 670-6B] gi|5830520|emb|CAB54566.1| response regulator [Streptococcus pneumoniae] gi|14973122|gb|AAK75713.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|15459132|gb|AAL00278.1| Response regulator [Streptococcus pneumoniae R6] gi|116076706|gb|ABJ54426.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|147759716|gb|EDK66706.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|147764502|gb|EDK71433.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147925877|gb|EDK76952.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|168995725|gb|ACA36337.1| response regulator [Streptococcus pneumoniae Hungary19A-6] gi|183569849|gb|EDT90377.1| response regulator [Streptococcus pneumoniae CDC1087-00] gi|183578765|gb|EDT99293.1| response regulator [Streptococcus pneumoniae MLV-016] gi|225721513|gb|ACO17367.1| response regulator [Streptococcus pneumoniae 70585] gi|225723119|gb|ACO18972.1| response regulator [Streptococcus pneumoniae JJA] gi|225726677|gb|ACO22528.1| response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|301794621|emb|CBW37069.1| response regulator protein [Streptococcus pneumoniae INV104] gi|301802336|emb|CBW35090.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302599074|gb|EFL66100.1| DNA-binding response regulator [Streptococcus pneumoniae BS455] gi|302636205|gb|EFL66700.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|302640060|gb|EFL70515.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|302640603|gb|EFL71006.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|302643485|gb|EFL73757.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|302646626|gb|EFL76851.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] gi|306409798|gb|ADM85225.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pneumoniae AP200] gi|306484905|gb|ADM91774.1| response regulator [Streptococcus pneumoniae 670-6B] gi|327389818|gb|EGE88163.1| response regulator [Streptococcus pneumoniae GA04375] gi|332073967|gb|EGI84445.1| response regulator [Streptococcus pneumoniae GA41301] gi|332199663|gb|EGJ13738.1| response regulator [Streptococcus pneumoniae GA41317] gi|332200194|gb|EGJ14267.1| response regulator [Streptococcus pneumoniae GA47368] gi|332201060|gb|EGJ15131.1| response regulator [Streptococcus pneumoniae GA47901] Length = 225 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP + +LA+V + RR Sbjct: 67 IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + + D QG+V L + E +IL L + G VA+ + ++ D Sbjct: 127 SLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +GF +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLVGF--IETKKGIGYGL 222 >gi|226944932|ref|YP_002800005.1| Response regulator [Azotobacter vinelandii DJ] gi|226719859|gb|ACO79030.1| Response regulator [Azotobacter vinelandii DJ] Length = 221 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 8/165 (4%) Query: 57 GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ LE+ R RA P++ ++ S ++ +G DD + KP H E+ R+ A+ Sbjct: 56 GKPGLEVLREWRAQGLATPVLVLTARASWAERIEGLKAGADDYLCKPFHPEELQLRIQAL 115 Query: 116 YRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR N+ E G +++ + E L E R+L YLM + G+ ++K Q+ Sbjct: 116 LRRAHGLANQPQLEAGGLQLDEARQVVRCGTEDIELTAAEFRLLRYLMLHPGQLLSKGQL 175 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y E + NV+E HI+ +LR KLG ++++R GY Sbjct: 176 AEHLYDGETER-DSNVIEVHIN----RLRGKLGRTVIETRRGQGY 215 >gi|302559780|ref|ZP_07312122.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus Tu4000] gi|302477398|gb|EFL40491.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus Tu4000] Length = 249 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 84/163 (51%), Gaps = 8/163 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ R VP++ ++ +++ + +G DD V KP E++AR+ + RR + Sbjct: 85 LGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAA 144 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R+E+ G + + D + G+ L E +L +LM N + ++K QI ++ Sbjct: 145 DRRSESMLVVGDLTLDEDSHEVTRGGDGIHLTATEFELLRFLMRNPRRVLSKAQILDRVW 204 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +D + NVVE +IS LR+K+ G +P + ++R GY I Sbjct: 205 S-YDFGGQANVVELYISYLRRKI--DAGREPMIHTRRGAGYLI 244 >gi|298489896|ref|YP_003720073.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298231814|gb|ADI62950.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 25/223 (11%) Query: 18 LFGDDGVSLEGFNSLE--FEEWLQSSAREDVSAIEAF-----------LIGKGEKVLELP 64 L +D V L F LE +E + S A + ++A+ A + G LE+ Sbjct: 5 LLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARQLNLDLIILDWMLPGVSGLEIC 64 Query: 65 RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +RA +VP+I ++ + + D+G DD V KP E+LARV A RR K Sbjct: 65 RRLRASGDKVPIILLTAKDEVSACVAGLDAGADDYVVKPFSLEELLARVRAHLRRSK--- 121 Query: 124 NRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ I +F D GEV+ L +E +L+YL+ + + + + +I + Sbjct: 122 -ETDSADILMFDDLSLNRSTGEVYRGQRLVELTAKEFDLLDYLLTHPRQVITRDRILEEV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D + NV+E +I LR KL + + R +GY + Sbjct: 181 WG-YDFMGDSNVIEVYIRYLRLKLEANNEKRLLQTVRGVGYVL 222 >gi|194014361|ref|ZP_03052978.1| two-component response regulator [Bacillus pumilus ATCC 7061] gi|194013387|gb|EDW22952.1| two-component response regulator [Bacillus pumilus ATCC 7061] Length = 228 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 5/162 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + ++ P+I I+ S+ + D G +D + KP E+LAR+ A R + Sbjct: 66 LRRVRKTNTATPIILITARGSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLRLNIHA 125 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ET + V RD + G++ L RE +L +L+ ++ + + + Q+ +A++ Sbjct: 126 QEEKETELSIADLTVNEKTRDIQRAGQMLELTPREFDLLVHLLKHQQQVLTRDQLLTAVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G FD + NVV+ +I LRKK+ + + R +GY + Sbjct: 186 G-FDYFGDTNVVDVYIRYLRKKVDYPFEKQLIHTVRGVGYVM 226 >gi|182437360|ref|YP_001825079.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777970|ref|ZP_08237235.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178465876|dbj|BAG20396.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658303|gb|EGE43149.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 248 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 99/209 (47%), Gaps = 22/209 (10%) Query: 31 SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78 +L +E W SA + A+ A ++ + + L R+ R + VP++ + Sbjct: 39 ALRYEGWEVRSAGDGAGAVRAARDFRPDAVVLDVMLPDMDGLSVLGRLRREYDDVPVLFL 98 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAET----GPIR 132 + +++ + +G DD V KP E++AR+ + RR V+ RAE+ G + Sbjct: 99 TARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGSAVAAGRAESTLTVGDLV 158 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + D + G+ + E +L +LM N + ++K QI ++ +D + NVVE Sbjct: 159 LDEDSHEVSRGGDAIHVTATEFELLRFLMRNPRRVLSKAQILDRVWN-YDFGGQANVVEL 217 Query: 193 HISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +IS LRKK+ G P + ++R GY I Sbjct: 218 YISYLRKKI--DAGRTPMIHTRRGAGYLI 244 >gi|167855905|ref|ZP_02478655.1| YgiX [Haemophilus parasuis 29755] gi|167852993|gb|EDS24257.1| YgiX [Haemophilus parasuis 29755] Length = 223 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 5/202 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D L+ +G G S++ F + SSA D ++ L G +V Sbjct: 3 ILLIEDDPLIGEGLKLGLSKSGFSVDWFTDGKTGLDALSSAPYDAVVLDLTLPKMDGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L+ R RA+ VP++ ++ +L + G DD + KP E++AR+ A I RR Sbjct: 63 LQSWR--RANQDVPVLILTARDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRRY 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N E ++ + R ++ + L RE +LE M N+ + + ++ I +Y Sbjct: 121 GHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLELFMHNKDRVLTRSFIEEKLYT 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 +D+ V N +E HI LR+KL Sbjct: 181 -WDDEVSSNALEVHIYNLRQKL 201 >gi|148984065|ref|ZP_01817360.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|148994896|ref|ZP_01823917.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|149021277|ref|ZP_01835523.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168483497|ref|ZP_02708449.1| response regulator [Streptococcus pneumoniae CDC1873-00] gi|168488654|ref|ZP_02712853.1| response regulator [Streptococcus pneumoniae SP195] gi|225857250|ref|YP_002738761.1| response regulator [Streptococcus pneumoniae P1031] gi|289167497|ref|YP_003445766.1| response regulator [Streptococcus mitis B6] gi|307702096|ref|ZP_07639103.1| response regulator [Streptococcus mitis NCTC 12261] gi|307705357|ref|ZP_07642219.1| response regulator [Streptococcus mitis SK597] gi|307707007|ref|ZP_07643804.1| response regulator [Streptococcus mitis SK321] gi|307707429|ref|ZP_07643911.1| response regulator [Streptococcus mitis NCTC 12261] gi|322377389|ref|ZP_08051880.1| DNA-binding response regulator [Streptococcus sp. M334] gi|147923354|gb|EDK74467.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|147926964|gb|EDK78009.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|147930378|gb|EDK81362.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|172043120|gb|EDT51166.1| response regulator [Streptococcus pneumoniae CDC1873-00] gi|183572816|gb|EDT93344.1| response regulator [Streptococcus pneumoniae SP195] gi|225725623|gb|ACO21475.1| response regulator [Streptococcus pneumoniae P1031] gi|288907064|emb|CBJ21898.1| response regulator [Streptococcus mitis B6] gi|301800454|emb|CBW33088.1| response regulator protein [Streptococcus pneumoniae OXC141] gi|307616381|gb|EFN95572.1| response regulator [Streptococcus mitis NCTC 12261] gi|307616583|gb|EFN95773.1| response regulator [Streptococcus mitis NCTC 12261] gi|307617533|gb|EFN96703.1| response regulator [Streptococcus mitis SK321] gi|307621144|gb|EFO00219.1| response regulator [Streptococcus mitis SK597] gi|321281589|gb|EFX58598.1| DNA-binding response regulator [Streptococcus sp. M334] gi|332072466|gb|EGI82949.1| response regulator [Streptococcus pneumoniae GA17570] Length = 225 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP + +LA+V + RR Sbjct: 67 IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + + D QG+V L + E +IL L + G VA+ + ++ D Sbjct: 127 SLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +GF +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLVGF--IETKKGIGYGL 222 >gi|18311470|ref|NP_563404.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18146154|dbj|BAB82194.1| two-component response regulator [Clostridium perfringens str. 13] Length = 228 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 4/145 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 +E+ + IR S VP+I ++ + + G DD V KP +E+LARV A+ RR Sbjct: 65 MEVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYS 124 Query: 120 -KVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +N P + + ++ GE P +E +L YL +N+ K + Q+ + Sbjct: 125 GEEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202 +G +D V+ HI +LR+KL Sbjct: 185 WG-YDYPGYSRTVDVHIKRLREKLN 208 >gi|150389310|ref|YP_001319359.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949172|gb|ABR47700.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 227 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 81/161 (50%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--AAIYRR 118 +E+ R IR +S+VP+I ++ + + D G +D + KP E+LAR+ A + Sbjct: 63 IEVLRKIRHNSEVPIIMLTAKDEVMDKVIGLDMGANDYITKPFAIEELLARIRSALKTKN 122 Query: 119 LKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +S R+ ++G +++ D E L ++E +L Y + N + + +I + Sbjct: 123 HGISEGRSLQSGSLKLDIDKHKVTYDEETVELTKKEFDLLHYFLENHDIVLTRDKILQTV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +G +D + N+V+ +I LR K+ +K + + R +GY Sbjct: 183 WG-YDYMGDTNIVDVYIRYLRSKIDDKYNKKIIYTIRGVGY 222 >gi|89896507|ref|YP_519994.1| hypothetical protein DSY3761 [Desulfitobacterium hafniense Y51] gi|219667638|ref|YP_002458073.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89335955|dbj|BAE85550.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219537898|gb|ACL19637.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 231 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 12/150 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S P++ +S + ++ D G DD + KP H E+LAR+ A+ RRL+ Sbjct: 68 REIRGFSGTPILVVSAREQEKEKIEALDLGADDYITKPFHMGELLARIRAVKRRLQ---Q 124 Query: 125 RAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + VFS + R V G L E ++L+ ++AN+GK + I Sbjct: 125 QLAPPSLSVFSCDYLTVDYEKRKVLVDGNEVHLTPMEYKLLQLMIANKGKVLTHNYIVKE 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG 206 ++G + E + + ++ LR+K+ + Sbjct: 185 VWG-YSETGDTKTIRVFMANLRRKIEKNIA 213 >gi|322391334|ref|ZP_08064804.1| nisin biosynthesis regulatory protein NisR [Streptococcus peroris ATCC 700780] gi|321145760|gb|EFX41151.1| nisin biosynthesis regulatory protein NisR [Streptococcus peroris ATCC 700780] Length = 228 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 79/145 (54%), Gaps = 4/145 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117 LE+ ++IR VP+ I+ + + ++G DD + KP +E+LARV R Sbjct: 60 LEICQMIREQITVPICFITAKDMDEDLVAGINAGADDYIMKPFSMQELLARVKMHLRREE 119 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R K + ++ ++G + +++D ++ + + L RRE I+ L +N K + +I++ + Sbjct: 120 RTKETVHQIKSGKLILYTDSKELFINDDKIALTRREFDIVNLLASNPSKIYSIEEIYNYL 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202 Y EA+ +V E +I K+R+KL+ Sbjct: 180 YPQSSEALLRSVSE-YIYKIRQKLK 203 >gi|239994403|ref|ZP_04714927.1| two component transcriptional regulator, winged helix family protein [Alteromonas macleodii ATCC 27126] Length = 225 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 10/193 (5%) Query: 19 FGDDGVSLEGFNSLEFEEW--LQSSAREDVSAIEAF--LIGKGEKVLELPRIIRAHSQVP 74 F G+S EGF +E L + R + AI + G + V LP I++ P Sbjct: 15 FLSRGLSAEGFECIEESALHNLVTRIRHEAPAIIVLDRMFGDEDSVELLP-AIKSLPHAP 73 Query: 75 LIGI-SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGP 130 ++ + + ++ ++ G DD + KP E+LAR+ A+ RR+ V+ GP Sbjct: 74 MVLLLTAVDEVRERVNGLKQGADDYLCKPFDFDELLARITALSRRVTNTPVTQLGLTIGP 133 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + R + GE L + E +L Y N K +++ +I S ++ + + NVV Sbjct: 134 LNIDDESRIATLSGEEISLTKLEYDMLYYFAENAEKVLSRERILSRVWRSHSDPL-TNVV 192 Query: 191 ESHISKLRKKLRN 203 + +IS+LR+KL + Sbjct: 193 DVYISRLRQKLHS 205 >gi|167578493|ref|ZP_02371367.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] Length = 220 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 12/162 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + R +P+I ++ +L + D G DD + KP E+LAR+ A+ RR Sbjct: 63 LAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRR---Q 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 RA+T G +R+ G+ L +E +L LM G +++ Q +Y Sbjct: 120 TGRAQTVLAVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E +E N V+ HI LRK KLG D + + R +GY I Sbjct: 180 S-WGEEIESNAVQVHIHNLRK----KLGHDTILTVRGVGYRI 216 >gi|332872003|ref|ZP_08440390.1| transcriptional activator protein Irlr [Acinetobacter baumannii 6013113] gi|332731036|gb|EGJ62339.1| transcriptional activator protein Irlr [Acinetobacter baumannii 6013113] Length = 223 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 83/160 (51%), Gaps = 8/160 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123 +++R S++P+I ++ + + + G DD + KP + E+LAR+ ++ RR + + Sbjct: 64 QVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQYLQE 123 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182 N +++ G G + L + E +L YL+ N+ + V + QI S ++ + FD Sbjct: 124 NELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWNINFD 183 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 + N ++ + +LR K+ G++P + + R LGY I Sbjct: 184 --TDTNNIDVAVRRLRSKIDE--GYEPKLIHTIRGLGYKI 219 >gi|318042529|ref|ZP_07974485.1| two-component system response regulator [Synechococcus sp. CB0101] Length = 233 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 80/153 (52%), Gaps = 4/153 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRA--E 127 + +P++ ++ ++ + D+G DD + KP + RE+LARV A+ RR SN +A E Sbjct: 78 NTIPILMVTAKDEVEDRVKALDAGADDYLCKPFNIRELLARVRALVRRNSNTSNKKALLE 137 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + + V G+ L RE +L LM + +++ Q+ + ++G D + Sbjct: 138 YGALSINRPEHICSVNGKAIHLTVREFDLLSTLMEQPKQVISREQLITEVWG-EDYFGDI 196 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 VV+++I LR KLR + + + R +G+++ Sbjct: 197 TVVDTYIKYLRVKLRTHGLGEMIQTVRGVGFTL 229 >gi|307243353|ref|ZP_07525515.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306493267|gb|EFM65258.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 240 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 10/166 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E R IR S +P++ ++ ++ F G DD + KP E++ R+ ++ RR Sbjct: 67 FETLRQIREFSNIPILMLTARTDSILKIEGFRIGADDYLTKPFELPELVVRILSLIRRYT 126 Query: 121 VSNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V N E +++ D R + + L +E IL +L N+GK + K I+ Sbjct: 127 VFNGIEEVNAEICFDGLKILPDDRSVHGEFGICELHPKEYEILFFLAKNQGKILTKQSIY 186 Query: 175 SAIYGLFDEAV-EENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 +++ DE + ++N + + IS+LRKKL+ D +++ + +GY Sbjct: 187 ESVWK--DEYIYDDNNIMAVISRLRKKLQTVTNMNDYIETVKGVGY 230 >gi|168493531|ref|ZP_02717674.1| response regulator [Streptococcus pneumoniae CDC3059-06] gi|194398437|ref|YP_002038249.1| response regulator [Streptococcus pneumoniae G54] gi|221232376|ref|YP_002511529.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|183576296|gb|EDT96824.1| response regulator [Streptococcus pneumoniae CDC3059-06] gi|194358104|gb|ACF56552.1| response regulator TCS01 [Streptococcus pneumoniae G54] gi|220674837|emb|CAR69411.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] Length = 225 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP + +LA+V + RR Sbjct: 67 IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + + D QG+V L + E +IL L + G VA+ + ++ D Sbjct: 127 SLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +GF +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLVGF--IETKKGIGYGL 222 >gi|149923814|ref|ZP_01912205.1| two component transcriptional regulator, winged helix family protein [Plesiocystis pacifica SIR-1] gi|149815326|gb|EDM74870.1| two component transcriptional regulator, winged helix family protein [Plesiocystis pacifica SIR-1] Length = 231 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 15/213 (7%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 A V+ GY AL L G + W R D+ ++ L G E+ R +R Sbjct: 22 AFVRRGYEALL------LHGGGEVVPAVW---RLRPDLLVLDLML--PGADGFEILRHLR 70 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 P++ ++ + + G DD + KP+ +LARV A+ RR + AE Sbjct: 71 PRWTGPILILTARDGDFDQVSGLELGADDYIAKPVATPVLLARVRALLRRSRSGPREAEL 130 Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G +R+ R+ QG + L E +L +L A G+ V + Q+F + G+ + ++ Sbjct: 131 ELGELRITPSAREVRAQGRLLSLSDSEYELLVFLAARAGEVVTREQLFRELRGIEYDGLD 190 Query: 187 ENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + ++ +SKLR +LR +L G P+ + GY Sbjct: 191 RS-MDLRVSKLRARLREQLEGRAPIRTVHGRGY 222 >gi|317492809|ref|ZP_07951233.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918931|gb|EFV40266.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 241 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 79/168 (47%), Gaps = 4/168 (2%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S VP++ ++ L + G DD + KP RE++ARV Sbjct: 66 LMLPGTDGLTLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 I RR V + P+ + + R Q ++ L E R+L+ L G +++ Sbjct: 126 KTILRRC-VRRTESNAEPMLIIDENRYQASFQDQLLDLTPAEFRLLKTLATQPGTVLSRE 184 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 Q+ + +Y + V + V+SHI LR+KL +P + S +GY Sbjct: 185 QLLNHLYDDY-RVVTDRTVDSHIKNLRRKLEQLENGEPFIRSVYGIGY 231 >gi|311033061|ref|ZP_07711151.1| DNA-binding response regulator [Bacillus sp. m3-13] Length = 232 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 73/159 (45%), Gaps = 2/159 (1%) Query: 62 ELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 E+ R +R S +P+I IS + F G DD V KP E++ R+ A+ RR Sbjct: 69 EICRWVRNDLKSLMPIIIISGKTEESDIIKGFKLGADDYVVKPFRPAELMVRIEAVLRRT 128 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + G L + E ++L + M N + + + QI ++IY Sbjct: 129 AARCGKLSFTGFTLKPAKGEALINGSPLNLTKFEFKLLHFFMQNSDQVLTREQILNSIYE 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ V + ++ HI LR+K++ D + + R +GY Sbjct: 189 HHEKMVSDRTIDVHIKHLREKIKMYTPKDYIQTVRGMGY 227 >gi|257084611|ref|ZP_05578972.1| subtilin biosynthesis regulatory protein SpaR [Enterococcus faecalis Fly1] gi|256992641|gb|EEU79943.1| subtilin biosynthesis regulatory protein SpaR [Enterococcus faecalis Fly1] Length = 228 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 5/162 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR P+I IS + + +SG DD + KP +++ ++ + RR Sbjct: 60 IDICKRIRDSVSYPIIFISALGLEEDIIYGLESGGDDYITKPFSLKQLKVKIDSHLRRET 119 Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +N + T + + + + V G + P++E ++E L++N G ++K Q+F I Sbjct: 120 RNNVPKKKIHTQNVVLNKEKKQVVVNGTIVIFPKKEYLVIEKLISNIGNVISKDQLFETI 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 +G +D + V HI K+R K+ F + +K LGY Sbjct: 180 WG-YDSESSLSTVTEHIKKIRSKIAEYDSNFTYIQTKYGLGY 220 >gi|219856745|ref|YP_002473867.1| hypothetical protein CKR_3402 [Clostridium kluyveri NBRC 12016] gi|219570469|dbj|BAH08453.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 233 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 11/143 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP++ ++ + + SG DD + KP E++ARV ++ RR N Sbjct: 70 IRQTSSVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLIRRYTRFNTTG 129 Query: 127 ETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + D R Q F LP +E +L + N+GK + K QI+ ++G Sbjct: 130 DHSQPLTYQGLTIDLDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIYEEVWG- 188 Query: 181 FDEA--VEENVVESHISKLRKKL 201 EA +++ + + IS+LRKK+ Sbjct: 189 --EAYVYDDSNIMAIISRLRKKI 209 >gi|195978766|ref|YP_002124010.1| TCS response regulator CovR-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225867917|ref|YP_002743865.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225871169|ref|YP_002747116.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|195975471|gb|ACG62997.1| TCS response regulator CovR-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700573|emb|CAW95079.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|225701193|emb|CAW98111.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 228 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 90/191 (47%), Gaps = 8/191 (4%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 E L+++ +D I L+ E+ R ++ ++ ++ S+ + D G Sbjct: 37 EGLETALEKDFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGA 96 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPL 149 DD + KP E+LAR+ AI+RR + + + +T V+ D R + L Sbjct: 97 DDYIVKPFAIEELLARIRAIFRRQDIESEK-KTPSQGVYRDLVLNPQNRSVNRGDDEISL 155 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +RE +L LM N + + + ++ S ++ +DEAVE NVV+ +I LR K+ Sbjct: 156 TKREYDLLNILMTNMNRVMTREELLSNVWK-YDEAVETNVVDVYIRYLRGKIDIPGKESY 214 Query: 210 VDSKRFLGYSI 220 + + R +GY I Sbjct: 215 IQTVRGMGYVI 225 >gi|189351379|ref|YP_001947007.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|221200185|ref|ZP_03573228.1| DNA-binding response regulator [Burkholderia multivorans CGD2M] gi|221206662|ref|ZP_03579674.1| DNA-binding response regulator [Burkholderia multivorans CGD2] gi|221211364|ref|ZP_03584343.1| DNA-binding response regulator [Burkholderia multivorans CGD1] gi|189335401|dbj|BAG44471.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|221168725|gb|EEE01193.1| DNA-binding response regulator [Burkholderia multivorans CGD1] gi|221173317|gb|EEE05752.1| DNA-binding response regulator [Burkholderia multivorans CGD2] gi|221180424|gb|EEE12828.1| DNA-binding response regulator [Burkholderia multivorans CGD2M] Length = 220 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 IDVLRTLRARGLSLPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 118 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+E+ G + + + G L RE +LE L+A G ++K+Q+ Sbjct: 119 --QAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 177 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 216 >gi|150008544|ref|YP_001303287.1| two-component system response regulator [Parabacteroides distasonis ATCC 8503] gi|255014344|ref|ZP_05286470.1| two-component system response regulator [Bacteroides sp. 2_1_7] gi|256841439|ref|ZP_05546946.1| phosphate regulon transcriptional regulatory protein PhoB [Parabacteroides sp. D13] gi|262383394|ref|ZP_06076530.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|298376189|ref|ZP_06986145.1| DNA-binding response regulator [Bacteroides sp. 3_1_19] gi|301309445|ref|ZP_07215387.1| DNA-binding response regulator [Bacteroides sp. 20_3] gi|149936968|gb|ABR43665.1| two-component system response regulator [Parabacteroides distasonis ATCC 8503] gi|256737282|gb|EEU50609.1| phosphate regulon transcriptional regulatory protein PhoB [Parabacteroides sp. D13] gi|262294292|gb|EEY82224.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|298267226|gb|EFI08883.1| DNA-binding response regulator [Bacteroides sp. 3_1_19] gi|300832534|gb|EFK63162.1| DNA-binding response regulator [Bacteroides sp. 20_3] Length = 226 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 80/168 (47%), Gaps = 4/168 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G +L+ R +R + +I D S++ + D G DD + KP H E+ AR+ + Sbjct: 57 GSGLTLLKELRALRKKDSIIIISAKD--SIEDKVTGLDLGADDYLTKPFHLAELNARIKS 114 Query: 115 IYRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR + + + ++ D + G+ L R+E +L Y ++N + ++K + Sbjct: 115 VIRRKQQDGELQLSLANLTIYPDKHSVYINGKEIVLNRKEFDLLYYFISNPNRLISKATL 174 Query: 174 FSAIYGLF-DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++G + D+A + + S + LRKKL+ + + GY + Sbjct: 175 AESVWGDYIDQADNFDFIYSQVKNLRKKLKAAGAIPEIKAVYGFGYKM 222 >gi|315612711|ref|ZP_07887622.1| response regulator [Streptococcus sanguinis ATCC 49296] gi|315314821|gb|EFU62862.1| response regulator [Streptococcus sanguinis ATCC 49296] Length = 225 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP + +LA+V + RR Sbjct: 67 IRKISKVPIMFLSSRDQAIDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + + D QGEV L + E +IL L + G VA+ + ++ D Sbjct: 127 SLLEYAGVILNTKSMDLHYQGEVLSLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLAGFIETKKGIGYGL 222 >gi|229118520|ref|ZP_04247873.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228664901|gb|EEL20390.1| DNA-binding response regulator [Bacillus cereus Rock1-3] Length = 234 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 84/163 (51%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR +S VP+I ++ + L + G DD + KP + +LAR+ I +R S Sbjct: 74 ICREIRKNSDVPIIIVTSRDNEVDELMSMNLGADDFITKPYNTEILLARITNIMKRTYGS 133 Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++T + + D + +V L + E +IL YL+ N+G V + + Sbjct: 134 ---SKTSNMLSYMDFHLNLSNASVMYKDQVIELTKNEVKILSYLINNKGNIVKREFLMEH 190 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 ++ D V++ + +I++LRKKL +LG +P++++R LGY Sbjct: 191 LWK-SDYFVDDGTLTVNITRLRKKLE-ELGIENPIETRRGLGY 231 >gi|255657155|ref|ZP_05402564.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296452007|ref|ZP_06893722.1| response regulator [Clostridium difficile NAP08] gi|296879598|ref|ZP_06903577.1| response regulator [Clostridium difficile NAP07] gi|296259198|gb|EFH06078.1| response regulator [Clostridium difficile NAP08] gi|296429401|gb|EFH15269.1| response regulator [Clostridium difficile NAP07] Length = 223 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 88/195 (45%), Gaps = 20/195 (10%) Query: 12 KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEA---FLIGKGEKVLELPRIIR 68 K GY + DDGV E L+ S D+ ++ +L G + R+ R Sbjct: 23 KGGYTCVTADDGV--EALTILK-------SNNIDLMILDVMMPYLDG-----FSVCRVSR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRA 126 + +P+I ++ + L ++ G DD + KP + +LA+V A+ RR + N Sbjct: 69 EMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTTGIPKNSL 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G I + R V+ ++ L +E +L M N + ++ ++ + I+G +D Sbjct: 129 ILGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG-YDFEGN 187 Query: 187 ENVVESHISKLRKKL 201 V++HI LRKKL Sbjct: 188 TRTVDTHIKTLRKKL 202 >gi|225182095|ref|ZP_03735524.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225167214|gb|EEG76036.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 226 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 12/167 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R S P+I ++ + D G DD + KP RE+++R+ ++ RR Sbjct: 62 ELCREFGGQSDTPVIFLTACDEEVNVVMGLDMGADDYITKPFRVRELVSRIKSVLRRYNK 121 Query: 122 SN-NRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S N AE ++ + + +V GE L E R+L L ++G + + QI ++ Sbjct: 122 SMPNNAEINLGKLIINTAEAKVYKDGEAVLLTALEYRLLLTLANSKGLTLTRNQILEGLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220 + + V +N + +I +LR+K+ + DP + + R LGY + Sbjct: 182 DVAGDFVNDNTLTVYIKRLREKIED----DPQQPQIIKTVRGLGYKV 224 >gi|110799121|ref|YP_695585.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168206260|ref|ZP_02632265.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168209490|ref|ZP_02635115.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168212262|ref|ZP_02637887.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|168216017|ref|ZP_02641642.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182625180|ref|ZP_02952956.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|110673768|gb|ABG82755.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|170662235|gb|EDT14918.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170712397|gb|EDT24579.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170715969|gb|EDT28151.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|177909639|gb|EDT72073.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|182381725|gb|EDT79204.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 227 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 25/231 (10%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKG-EKV 60 +L++D + + + F +D V +E ++ L+ E+L + D+ ++ L G G +V Sbjct: 5 LLVEDNIEISENIVEYFKND-VEIECVYDGLDAIEYLNTYYF-DIVILDLMLPGAGGMEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117 L R ++ V I ++ L L F+ G +D + KP E+ ARV I + Sbjct: 63 LNFISKKRLNTGV--IVLTAKEELGDKLRAFNLGANDYLTKPFFMEELKARVNVILKSLG 120 Query: 118 RLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++K SN +VF + ++ E+ ++F L LEYL+ N+G + K Sbjct: 121 KIKDSNILQFKSMEINMKTKKVFINHKELELNEKLFNL-------LEYLVINKGVVLFKE 173 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 Q+F I G +A E ++E ++S+LRK+L + G+D + +KR +GY ID Sbjct: 174 QLFDNICGYNSDASTE-IIEVYMSRLRKQL-SPFGYDKYIVTKRGMGYLID 222 >gi|301062846|ref|ZP_07203439.1| putative transcriptional activator protein CopR [delta proteobacterium NaphS2] gi|300443046|gb|EFK07218.1| putative transcriptional activator protein CopR [delta proteobacterium NaphS2] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 5/149 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRA-ETGP 130 P+I +S S+ + +G DD + KP E+LAR+ A+ RR +V+ A G Sbjct: 73 TPVIILSAKRSVDDRVRGLQTGGDDYMTKPFSFSELLARIHALIRRSTRVAEPSALSAGN 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189 + + R+ + GE LP RE +LE+L+ N+G+ V+KT I +Y FD + NV Sbjct: 133 LTLDLLTREVKRGGEEISLPAREFALLEHLVRNKGRIVSKTSILEHVYDYSFDP--QTNV 190 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ + ++R K+ + + R +GY Sbjct: 191 VDVLVCRVRNKVDKDFDRKLIHTVRGMGY 219 >gi|294792553|ref|ZP_06757700.1| DNA-binding response regulator TrcR [Veillonella sp. 6_1_27] gi|294794344|ref|ZP_06759480.1| DNA-binding response regulator TrcR [Veillonella sp. 3_1_44] gi|313894218|ref|ZP_07827783.1| response regulator ArlR [Veillonella sp. oral taxon 158 str. F0412] gi|294454674|gb|EFG23047.1| DNA-binding response regulator TrcR [Veillonella sp. 3_1_44] gi|294456452|gb|EFG24815.1| DNA-binding response regulator TrcR [Veillonella sp. 6_1_27] gi|313441042|gb|EFR59469.1| response regulator ArlR [Veillonella sp. oral taxon 158 str. F0412] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 2/149 (1%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129 + P++ ++ SLQ + ++G DD + KP E+ AR+ A+ RR + + N G Sbjct: 71 NTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNARHAQNDIHVG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P+ + R + GE L +E +L YL +N +++ QI ++ +D N+ Sbjct: 131 PLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE-YDYESYSNL 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ +I LRKK+ + + R +GY Sbjct: 190 IDVYIKDLRKKIDTDENVKLIQTVRGVGY 218 >gi|229082837|ref|ZP_04215265.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228700472|gb|EEL53030.1| DNA-binding response regulator [Bacillus cereus Rock4-2] Length = 223 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I ++ S L + G DD + KP + +LARV I RR + Sbjct: 63 ICREIRKTSDVPIIMVTSRNSDVDELISMNLGADDFITKPYNTEILLARVTNILRR---T 119 Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +T I ++ D Q + L + E +IL L+ NRG V + + Sbjct: 120 SGDFKTNHILIYRDFNLNLSNATVTYQDKSVELTKNEVKILSCLINNRGNIVKRDSLIET 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 ++ D V+++ + +I++LRKKL ++G +P+ ++R LGY Sbjct: 180 LWK-SDYFVDDSTLTVNINRLRKKLE-EIGIENPIATRRSLGY 220 >gi|166031592|ref|ZP_02234421.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC 27755] gi|166028569|gb|EDR47326.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC 27755] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 106/227 (46%), Gaps = 12/227 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D + +++ I G GF + +E+L++ A E I ++ G Sbjct: 1 MIFCVEDDSNIRELVIYTLETTGFKARGFE--DGKEFLEALALETPELILLDIMLPGMDG 58 Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LEL ++A + +P+I ++ + + D+G DD V KP E+++R+ A+ R Sbjct: 59 LELLSKLKASPKNRDIPVIMLTAKGAEYDKVKALDAGADDYVTKPFGMMELVSRIKAVLR 118 Query: 118 RLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + + G I + + + GEV L +E +L+ LM N + + + Sbjct: 119 RTQKDTQDPQDVIVLGDIEMNTKKHEVTADGEVVTLTLKEYELLKRLMKNPNIVMTRDCL 178 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D E V+ H+ LR+KL K G + +++ R +GY + Sbjct: 179 LEDIWG-YDFDGETRTVDVHVRTLRQKL-GKSG-EKIETVRGVGYRM 222 >gi|161523860|ref|YP_001578872.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160341289|gb|ABX14375.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] Length = 225 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 65 IDVLRTLRARGLSLPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 123 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+E+ G + + + G L RE +LE L+A G ++K+Q+ Sbjct: 124 --QAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 182 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 221 >gi|68347297|gb|AAY94903.1| DNA-binding response regulator CreB [Pseudomonas fluorescens Pf-5] Length = 229 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 19/227 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D I F G EGF + + + S + ++ G + Sbjct: 7 ILIVEDEAAIADTLI--FALQG---EGFTTTWLSLGRAALEHQQASPADLIILDIGLPDI 61 Query: 62 ---ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E + +R S+VP++ +S + + G DD V KP RE+ ARV AI +R Sbjct: 62 SGFETCKQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKR 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + V DPE +G+ L R E R+L+ L+ + ++ Q+ Sbjct: 122 MVPRVAPEAVAALFVI----DPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSREQL 177 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 A+ + D E N ++SHI LR KLR +P+ + R LGYS Sbjct: 178 LDALGVMADVGYERN-IDSHIKSLRAKLRLVAAQAEPIQTHRGLGYS 223 >gi|111657541|ref|ZP_01408282.1| hypothetical protein SpneT_02001263 [Streptococcus pneumoniae TIGR4] Length = 231 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP + +LA+V + RR Sbjct: 73 IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 132 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + + D QG+V L + E +IL L + G VA+ + ++ D Sbjct: 133 SLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 191 Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +GF +++K+ +GY + Sbjct: 192 FIDDNTLSVNVARLRKKLEEQGLVGF--IETKKGIGYGL 228 >gi|326793099|ref|YP_004310920.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543863|gb|ADZ85722.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 225 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 83/167 (49%), Gaps = 12/167 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL ++ + + +P+I ++ + D G DD V KP RE+++R+ ++ RR Sbjct: 61 ELCKVAKENRDIPVIFLTACDDEVNVVMGLDMGADDYVTKPFRIRELISRIKSVLRR--- 117 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFS 175 N T I +++ R ++ +V+ L E R+L + + G+ +++ Q+ Sbjct: 118 HNKTDSTKAIFNYNNIRINTLEAKVYKNNKEVQLTALEYRLLLTFITHEGQALSRNQLLE 177 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 I+ + + V +N V +I +LR KL + G +P + + R +GY + Sbjct: 178 GIWDIAGDFVNDNTVTVYIKRLRDKLEDDPG-NPTFITTIRGIGYKV 223 >gi|228477550|ref|ZP_04062183.1| transcriptional activator protein CopR [Streptococcus salivarius SK126] gi|228250694|gb|EEK09892.1| transcriptional activator protein CopR [Streptococcus salivarius SK126] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 2/129 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ G DD + KP + E+ R+ A+ +R K N G +RV V + L Sbjct: 91 FELGADDYLTKPFYLEELKMRIQALLKRSGKFDQNTLSFGDVRVNLATNSTFVGDKEVEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L Y + N+ + K+QIF ++G FD +VVE ++SK+RKKL+ Sbjct: 151 LGKEFDLLVYFLQNQNVILPKSQIFDRLWG-FDSDTTVSVVEVYVSKIRKKLKGTDFATN 209 Query: 210 VDSKRFLGY 218 + + R +GY Sbjct: 210 LQTLRSVGY 218 >gi|237731111|ref|ZP_04561592.1| DNA-binding transcriptional regulator PhoP [Citrobacter sp. 30_2] gi|226906650|gb|EEH92568.1| DNA-binding transcriptional regulator PhoP [Citrobacter sp. 30_2] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 2/147 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P++ ++ Q ++ +G DD V KP H E+ AR+ A+ RR +++ P Sbjct: 74 LPILVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALMRRNSGLASQIISLPPF 133 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 +V R+ V EV L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 134 QVDLSRRELSVNDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 192 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +LRKK++ + D + + R GY Sbjct: 193 VLMGRLRKKIQAQYPDDVITTVRGQGY 219 >gi|167584571|ref|ZP_02376959.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 220 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 77/164 (46%), Gaps = 26/164 (15%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R +P I I+ L + DSG DD + KP E+LAR+ A+ RR RA+ Sbjct: 68 RRDETLPAIVITARDGLSDRIAGLDSGADDYLVKPFALEELLARIRAVNRR---HAGRAQ 124 Query: 128 T----GPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 T GP+R V+ D D EV L +E +L LM G +++ Q Sbjct: 125 TTLAVGPLRLDPVKHLVWLD--DAEVT-----LSPKEFVLLHELMREPGAVISREQFEER 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y + E +E N V+ HI LRK KLG D + + R +GY I Sbjct: 178 LYS-WGEEIESNAVQVHIHNLRK----KLGHDMIRTVRGVGYRI 216 >gi|26987013|ref|NP_742438.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24981631|gb|AAN65902.1|AE016218_4 DNA-binding response regulator GltR [Pseudomonas putida KT2440] Length = 239 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 13/187 (6%) Query: 28 GFNSLEFEEWLQSS---AREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84 G+N L + Q AR V + L+ GE L L R ++A + +I +S S Sbjct: 26 GYNVLAAADGQQMRDQLARHKVELVVLDLMLPGEDGLSLCRQLQATPGLAVIMLSAKGST 85 Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI--RVFSDGRDPEV 142 + + G DD + KP RE++AR+ A+ RR + AE + ++F+ R V Sbjct: 86 LDRIIGLEVGADDYLAKPFEPRELIARIKAVLRRPQRLGTSAEEPMVDAQLFAGFRLEHV 145 Query: 143 Q-------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 + GE LPR + R+L L+ + V++ Q+ + +G D ++ V+ +S Sbjct: 146 KRLLTRPDGETLTLPRSDYRVLRELLEANNRVVSRDQLTRSAFG-RDHLPDDRSVDMCVS 204 Query: 196 KLRKKLR 202 +LR++LR Sbjct: 205 RLRQQLR 211 >gi|70725698|ref|YP_252612.1| hypothetical protein SH0697 [Staphylococcus haemolyticus JCSC1435] gi|123660954|sp|Q4L8L9|HSSR_STAHJ RecName: Full=Heme response regulator hssR gi|68446422|dbj|BAE04006.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 91/183 (49%), Gaps = 6/183 (3%) Query: 40 SSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 ++ + D++ ++ + G EL ++++ +P+I ++ +L F SG DD V Sbjct: 42 ANNKVDIAVVDIMMTGMDG--FELCQLLKNDYDLPVIMLTARDALSDKERAFVSGTDDYV 99 Query: 100 NKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 KP +E+L R+ A+ RR ++ S + + G + + + + V + LP +E ++L Sbjct: 100 TKPFEVKELLFRIQAVLRRYQINSQDIIKLGNVTLIQEYMELSVDSKNVNLPTKEFQLL- 158 Query: 159 YLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217 +L+ + K + + + I+G FD +E ++ HI +LR +L + + R G Sbjct: 159 FLLCGQPKHIFTRDTLIERIWG-FDYEGDERTIDVHIKRLRHRLNQLKATIEIQTVRGQG 217 Query: 218 YSI 220 Y + Sbjct: 218 YRV 220 >gi|312128701|ref|YP_003993575.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311778720|gb|ADQ08206.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 223 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSN- 123 IR S+VP++ IS + + G DD + KP + A+V A+ RR VSN Sbjct: 67 IRKISKVPIMFISSASDNMNIIMAINMGGDDFIEKPFDLNVLTAKVHALIRRTYSFVSNI 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N E + + + Q + L + E +IL+ LM N G+ V++ +I ++ D Sbjct: 127 NLIEHKGVILNLNNTTLLYQNKKIELTKNEYKILQLLMENAGRVVSREEIMQHLWQ-SDS 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 +++N + +I++LRKKL +LG + + +K+ +GY I+ Sbjct: 186 FIDDNTLTVNITRLRKKLA-ELGLENFIKTKKGIGYIIE 223 >gi|240137869|ref|YP_002962341.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens AM1] gi|240007838|gb|ACS39064.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens AM1] Length = 220 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 14/195 (7%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD 89 + E L +SA + L G G VL R R + + P++ ++ ++ + Sbjct: 32 TCADAETALATSAFSAIVLDLMLLDGSGLDVLRALR--RRNDRTPVVLLTARDAVADRIA 89 Query: 90 FFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGE 145 D G DD + KP E+ AR+ A+ RR ++ RA E G IR+ + G Sbjct: 90 GLDGGADDYLGKPFDLDELSARIRAVVRR---ASGRAAAILEHGGIRLDPGSLAVTIDGL 146 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 + RRE +L LM +K+++ +YG + E VE N VE H+ LR K+ Sbjct: 147 PVAVSRREVMVLAALMERPDVLRSKSELEERLYG-WQEEVESNAVEVHVHNLRA----KI 201 Query: 206 GFDPVDSKRFLGYSI 220 G +++ R LGY + Sbjct: 202 GKHAIETVRGLGYRM 216 >gi|254423455|ref|ZP_05037173.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190944|gb|EDX85908.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 226 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 12/157 (7%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 + +P+I ++ + + + G DD V KP E+LARV R+ + + A Sbjct: 72 ATLPIIILTARDDIHDKVTGLEGGADDYVTKPFRFEELLARVRVRLRQAPAAGSAATGND 131 Query: 131 IRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 +++ R +V GE+ LP RE + E + G+ +++ Q+ ++G +D Sbjct: 132 QMLWASNVSLDLLTRRVQVSGEIVDLPAREFTLAETFFRHPGQVLSREQLLDRVWG-YDY 190 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+V+ ++ LRK KLG D +++ R +GY + Sbjct: 191 SPGSNIVDVYVGYLRK----KLGADLIETVRGIGYRL 223 >gi|190567143|ref|ZP_03020058.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|190561647|gb|EDV15617.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] Length = 232 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 12/163 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 65 RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S E +++F + + E L ++E + E L++ + ++ + +A++ Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLAALW 184 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGY 218 DE+ VEEN + +I++LRKK N+LG + ++ R LGY Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIDETVRGLGY 224 >gi|167616629|ref|ZP_02385260.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] gi|257143130|ref|ZP_05591392.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 220 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 12/162 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + R +P+I ++ +L + D G DD + KP E+LAR+ A+ RR Sbjct: 63 LAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRR---Q 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 RA+T G +R+ G+ L +E +L LM G +++ Q +Y Sbjct: 120 TGRAQTVLTVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E +E N V+ HI LRK KLG D + + R +GY I Sbjct: 180 S-WGEEIESNAVQVHIHNLRK----KLGHDTILTVRGVGYRI 216 >gi|149006700|ref|ZP_01830386.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|147761615|gb|EDK68579.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|332072800|gb|EGI83281.1| response regulator [Streptococcus pneumoniae GA17545] Length = 225 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP + +LA+V + RR Sbjct: 67 IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + + D QG+V L + E +IL L + G VA+ + ++ D Sbjct: 127 SLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +GF +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLVGF--IETKKGIGYGL 222 >gi|153956437|ref|YP_001397202.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146349295|gb|EDK35831.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 231 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 13/144 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP++ ++ + + SG DD + KP E++ARV ++ RR N Sbjct: 68 IRQTSSVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLIRRYTRFNTTG 127 Query: 127 ETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179 + + D R Q F LP +E +L + N+GK + K QI+ ++G Sbjct: 128 DHSQPLTYQGLTIDLDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIYEEVWGE 187 Query: 180 --LFDEAVEENVVESHISKLRKKL 201 ++D++ N++ + IS+LRKK+ Sbjct: 188 AYVYDDS---NIM-AIISRLRKKI 207 >gi|238018371|ref|ZP_04598797.1| hypothetical protein VEIDISOL_00196 [Veillonella dispar ATCC 17748] gi|237864842|gb|EEP66132.1| hypothetical protein VEIDISOL_00196 [Veillonella dispar ATCC 17748] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 2/149 (1%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129 + P++ ++ SLQ + ++G DD + KP E+ AR+ A+ RR + + N G Sbjct: 71 NTTPVLLLTAKDSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNARHAQNDIHVG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P+ + R + GE L +E +L YL +N +++ QI ++ +D N+ Sbjct: 131 PLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE-YDYESYSNL 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ +I LRKK+ + + R +GY Sbjct: 190 IDVYIKDLRKKIDTDENVKLIQTVRGVGY 218 >gi|229065401|ref|ZP_04200655.1| Two-component response regulator [Bacillus cereus AH603] gi|228715871|gb|EEL67636.1| Two-component response regulator [Bacillus cereus AH603] Length = 233 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 78/143 (54%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121 IR +P+I +S + SG DD + KP + E++ARV + RR K + Sbjct: 73 IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKKYNTSI 132 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++N++ E G + V +D R ++G+ L +E ILE L +N+G ++ +I+ A++ Sbjct: 133 NHNKSILEIGDLTVNTDTRQVWIRGKETRLTPKEFDILELLASNKGIVLSVAKIYEAVWK 192 Query: 180 -LFDEAVEENVVESHISKLRKKL 201 +F ++ +N V HI+K+R K+ Sbjct: 193 EVFYKS--DNTVMVHITKIRDKI 213 >gi|206972852|ref|ZP_03233774.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229072980|ref|ZP_04206174.1| DNA-binding response regulator [Bacillus cereus F65185] gi|206731736|gb|EDZ48936.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228710098|gb|EEL62078.1| DNA-binding response regulator [Bacillus cereus F65185] Length = 223 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I ++ S L + G DD + KP + +LARV I RR + Sbjct: 63 ICREIRKTSDVPIIMVTSRDSDVDELISMNLGADDFITKPYNTEILLARVTNILRR---T 119 Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +T I ++ D Q + L + E +IL L+ NRG V + + Sbjct: 120 SGDLKTNHILMYRDFNLNLSNATVTYQDKSVELTKNEVKILSCLINNRGNIVKRDSLIET 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 ++ D V+++ + +I++LRKKL ++G +P+ ++R LGY Sbjct: 180 LWK-SDYFVDDSTLTVNINRLRKKLE-EIGIENPIATRRSLGY 220 >gi|167585588|ref|ZP_02377976.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 220 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 IDVLRTLRARGLALPVLIVTARDAIADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 118 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+E+ G + + + G L RE +LE L+A G ++K+Q+ Sbjct: 119 --QAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 177 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 216 >gi|161501958|ref|YP_262771.2| DNA-binding response regulator CreB [Pseudomonas fluorescens Pf-5] Length = 226 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 19/227 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D I F G EGF + + + S + ++ G + Sbjct: 4 ILIVEDEAAIADTLI--FALQG---EGFTTTWLSLGRAALEHQQASPADLIILDIGLPDI 58 Query: 62 ---ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E + +R S+VP++ +S + + G DD V KP RE+ ARV AI +R Sbjct: 59 SGFETCKQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKR 118 Query: 119 LKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + V DPE +G+ L R E R+L+ L+ + ++ Q+ Sbjct: 119 MVPRVAPEAVAALFVI----DPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSREQL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 A+ + D E N ++SHI LR KLR +P+ + R LGYS Sbjct: 175 LDALGVMADVGYERN-IDSHIKSLRAKLRLVAAQAEPIQTHRGLGYS 220 >gi|117920171|ref|YP_869363.1| two component transcriptional regulator [Shewanella sp. ANA-3] gi|117612503|gb|ABK47957.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 227 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 77/151 (50%), Gaps = 3/151 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130 + P++ ++ + Q ++ ++G DD + KP E++AR+ A+ RR +G Sbjct: 75 KAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPVITSGE 134 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 +++ + + EV + E ILEYLM + + VAK ++ IYG D+ + N + Sbjct: 135 LKLDLAAKQVTLANEVMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDPNTI 192 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E +S+LRKKL +P+ + R GY + Sbjct: 193 EVMVSRLRKKLTRDGIDNPIVTIRGQGYKFN 223 >gi|315648883|ref|ZP_07901977.1| two component transcriptional regulator [Paenibacillus vortex V453] gi|315275564|gb|EFU38918.1| two component transcriptional regulator [Paenibacillus vortex V453] Length = 219 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 73/140 (52%), Gaps = 2/140 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IRA++ +P+I ++ SL + F+ G +D + KP E+LAR+ + RR K Sbjct: 62 ELMQHIRAYN-IPVIFLTAKESLSDRITGFELGAEDYIIKPFEIVELLARINVVLRRAKP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S++ G V R + L RE +LE L+ NR +++ ++ ++G + Sbjct: 121 SDDLFVLGEAEVKLLERQVLKNDQPVELTAREFDLLEVLIRNRNIALSREKLLELVWG-Y 179 Query: 182 DEAVEENVVESHISKLRKKL 201 D E V+ HI +LRKKL Sbjct: 180 DFLGETRTVDVHIRQLRKKL 199 >gi|315038843|ref|YP_004032411.1| two-component system regulator [Lactobacillus amylovorus GRL 1112] gi|325957282|ref|YP_004292694.1| two-component system regulator [Lactobacillus acidophilus 30SC] gi|312276976|gb|ADQ59616.1| two-component system regulator [Lactobacillus amylovorus GRL 1112] gi|325333847|gb|ADZ07755.1| two-component system regulator [Lactobacillus acidophilus 30SC] gi|327184012|gb|AEA32459.1| two-component system regulator [Lactobacillus amylovorus GRL 1118] Length = 238 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 12/175 (6%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L + +D AI L+ LE+ R +R P+I ++ S+ + D G DD Sbjct: 38 LDDALSQDFDAILLDLMLPDLNGLEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPIRVFSDGRDPEVQ----------GEV 146 + KP E+LAR+ A+ RR+K+ + ++ T + +D ++ G+ Sbjct: 98 YIVKPFAIEELLARLRAVLRRVKIEKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKA 157 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L +RE +L L+ N+ V++ Q+ + I+G + +E NVVE ++ LR K+ Sbjct: 158 IDLTKREYNLLMTLIENKNNVVSRDQLLNKIWG-PESNIETNVVEVYVRYLRNKI 211 >gi|284990844|ref|YP_003409398.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064089|gb|ADB75027.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 231 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 12/175 (6%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G LE+ R IR S P+I ++ + ++G DD V KP E+ AR+ Sbjct: 60 LVLPGRSGLEVCREIRRVSTTPVIMVTARADSSDVIAGLEAGADDYVTKPFVAEELSARI 119 Query: 113 AAIYRRLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 A+ RR S R G + + GEV PL R E +L L RG+ ++ Sbjct: 120 RALARRTGGSGPRPRIVVGDLEIAPADGVVTRGGEVVPLTRTEFTLLLELATERGRVFSR 179 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220 ++ ++G +D + +V+ H+ +LRKK+ DP V + R +GY + Sbjct: 180 EELLERVWG-YDYFGDSRLVDVHVRRLRKKVEA----DPAAPTVVTTVRGMGYRL 229 >gi|167769243|ref|ZP_02441296.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM 17241] gi|167668883|gb|EDS13013.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM 17241] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 96/204 (47%), Gaps = 14/204 (6%) Query: 27 EGFNSLEFEEWLQSSAR----EDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82 EGF +E + Q+ + EDV + ++ + + R IR S VP++ ++ Sbjct: 25 EGFKVVEAADGQQAVEKFEDNEDVVLVMLDVMMPKKDGYDACREIRGKSNVPILMLTARD 84 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGPIRVFSDGRDP 140 S Q + F +G D+ + KP ++ RV + RR SN+ ++ G ++V R Sbjct: 85 SEQDEVAGFGAGADEYIAKPFSPTILVTRVKNLLRRTS-SNDMSDVSAGGVKVLYRERTV 143 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 V G+ +E +L YL+ N + + QI ++ + D A ++ V++HI K Sbjct: 144 TVDGKKIITTPKEFDLLYYLIRNTNIVLTRDQIICTVWDM-DYAGDDRTVDTHI----KC 198 Query: 201 LRNKLG--FDPVDSKRFLGYSIDW 222 LR KLG + + R +GY +W Sbjct: 199 LRAKLGPYAKCIVTVRKVGYKFEW 222 >gi|92113096|ref|YP_573024.1| two component transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91796186|gb|ABE58325.1| two component transcriptional regulator, winged helix family [Chromohalobacter salexigens DSM 3043] Length = 227 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 2/111 (1%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRR 152 G DD + KP RE++ARV A+ RRL A T P+ + DG QG L Sbjct: 96 GADDYICKPFSPREVVARVKAVLRRLHPQTEEAATPAPLSLDEDGWRALAQGTDLGLTAV 155 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 E ++L+ +M G+ ++ Q+ +Y V E V+SHI KLR+K+ + Sbjct: 156 EFQLLKVMMQAPGRIFSRDQLMDHMYR-DHRIVSERTVDSHIKKLRRKIAD 205 >gi|167967698|ref|ZP_02549975.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis H37Ra] gi|61229967|sp|P0A5Z6|PRRA_MYCTU RecName: Full=Transcriptional regulatory protein prrA gi|61229968|sp|P0A5Z7|PRRA_MYCBO RecName: Full=Transcriptional regulatory protein prrA gi|90108539|pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra From Mycobacterium Tuberculosis gi|90108540|pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra From Mycobacterium Tuberculosis gi|90108541|pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra Comlexed With Mg2+ gi|90108542|pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra Comlexed With Mg2+ Length = 233 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 101/207 (48%), Gaps = 15/207 (7%) Query: 23 GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75 G+ L GF +++ E L+S+ AI ++ VL+ ++ A + VP+ Sbjct: 26 GLRLSGFEVATAVDGAEALRSATENRPDAI---VLDINMPVLDGVSVVTALRAMDNDVPV 82 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET---GPI 131 +S S+ + ++G DD + KP E++ARV A+ RR + + +ET GP+ Sbjct: 83 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPL 142 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V GR V G L +RE +L L ++ +++ Q+ ++G +D A + NVV+ Sbjct: 143 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 201 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 I LR+KL G + + R +G+ Sbjct: 202 VFIGYLRRKLEAGGGPRLLHTVRGVGF 228 >gi|228993584|ref|ZP_04153492.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] gi|228766175|gb|EEM14821.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] Length = 231 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 82/162 (50%), Gaps = 11/162 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 65 RQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S E +++F + + + L ++E + E L++ + + + +A++ Sbjct: 125 PNISERIVEVEGLKLFPERPEIHFGTKQVLLTKKEAILAEMLLSKHPRTANREDLLAALW 184 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 DE+ VEEN + +I++LRKK N+LG + +++ R LGY Sbjct: 185 D--DESFVEENTLNVNITRLRKKF-NELGIENAIETVRGLGY 223 >gi|170016759|ref|YP_001727678.1| response regulator [Leuconostoc citreum KM20] gi|169803616|gb|ACA82234.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Leuconostoc citreum KM20] Length = 229 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 8/148 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R + P+I ++ S+ + D G DD + KP E+LAR+ ++ RR+ Sbjct: 61 LEVARRLRESKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIA 120 Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ +R+ + R ++ L +RE +L L+ N ++ Q+ Sbjct: 121 IETESSDKHRAIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G FD VE NVV+ +I LR K+ Sbjct: 181 LKEVWG-FDSEVETNVVDVYIRYLRNKI 207 >gi|104781839|ref|YP_608337.1| DNA-binding response regulator [Pseudomonas entomophila L48] gi|95110826|emb|CAK15541.1| putative DNA-binding response regulator [Pseudomonas entomophila L48] Length = 220 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 15/167 (8%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +EL R +RA +P++ ++ +L + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 IELLRRVRAGGDSLPVLILTARDALDDRISGLDAGADDYLVKPFDLNELKARLRALLRR- 118 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S RA+ I DP Q G L +E R+L L+A GK + ++ Sbjct: 119 --SAGRAKV-LIEHAGVSLDPATQQVHYNGMEIVLTPKEYRLLHELLAQPGKVFTRERLT 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +YG +DE E N +E +I LRKKL N L + + R +GY ++ Sbjct: 176 QLLYG-WDEEPESNTLEVNIYHLRKKLFNGL----IRTVRGIGYLVE 217 >gi|323357907|ref|YP_004224303.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323274278|dbj|BAJ74423.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 244 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 6/162 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 L RI A + P++ ++ +++ + +G DD V KP + E++ R+ + RR Sbjct: 82 LTRIRAAGNDAPVLFLTAKDAVEDRIAGISAGADDYVTKPFNLEEVVVRLRGMARRHVAA 141 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ R G + + + + E G L +E +L YLM N + ++K QI ++ Sbjct: 142 IADADPRLRVGDLSLDEESYEVERGGIPIKLTAKEFELLRYLMQNPRRVLSKAQILDQVW 201 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D +VVE +IS LRKK+ + LG + + R +GY+I Sbjct: 202 S-YDFGGNGSVVEIYISYLRKKI-DSLGEPLIHTVRGVGYTI 241 >gi|163855906|ref|YP_001630204.1| two-component transcriptional regulator [Bordetella petrii DSM 12804] gi|163259634|emb|CAP41935.1| two-component transcriptional regulator [Bordetella petrii] Length = 235 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 3/151 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 + P++ +S +L + +G DD + KP E+ ARV A+ RR R + Sbjct: 74 KTPVLVLSALTALDERVRGLKAGGDDYLTKPFAFPELAARVEALIRRSSSGYERRQLTVA 133 Query: 132 RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + D +V G L RE ++L Y+M N G+ + +T + + ++G + + NV Sbjct: 134 DLSLDLVSGQVARGGRAITLQPREYKLLAYMMNNAGQVLTRTMLLATVWG-YHYDPQTNV 192 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ HIS+LR+K+ + + R +GY + Sbjct: 193 IDVHISRLRQKIDGPGEAPLIHTVRGVGYRL 223 >gi|85706948|ref|ZP_01038038.1| two component transcriptional regulator, winged helix family protein [Roseovarius sp. 217] gi|85668559|gb|EAQ23430.1| two component transcriptional regulator, winged helix family protein [Roseovarius sp. 217] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 9/166 (5%) Query: 57 GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ E+ R +RA P++ ++ + + D+G DD + KP RE+LAR + Sbjct: 56 GKSGYEILRSLRARGDATPVLILTARSQIDERVVGLDAGADDYMVKPFDFRELLARCRVL 115 Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR ++N G + + V G+ L RE ++LE L+ N G+ + K ++ Sbjct: 116 ARRRSGTASNIFVAGGLSFDRAAKRAIVAGKDVDLRAREVQLLEILIDNLGRMLTKEEVA 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218 +Y FDE+ N VE +++LR+KL + P + + R LGY Sbjct: 176 DKLYS-FDESPSMNAVEQIVTRLRRKLHDT----PLVIKTARGLGY 216 >gi|30265484|ref|NP_847861.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames] gi|42784660|ref|NP_981907.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987] gi|47531052|ref|YP_022401.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames Ancestor'] gi|47568665|ref|ZP_00239362.1| response regulator [Bacillus cereus G9241] gi|49188303|ref|YP_031556.1| DNA-binding response regulator YycF [Bacillus anthracis str. Sterne] gi|49480468|ref|YP_039456.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145274|ref|YP_086731.1| response regulator [Bacillus cereus E33L] gi|65317447|ref|ZP_00390406.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118480494|ref|YP_897645.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|165872537|ref|ZP_02217170.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488] gi|167636251|ref|ZP_02394554.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442] gi|167641448|ref|ZP_02399698.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193] gi|170689182|ref|ZP_02880379.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465] gi|170708658|ref|ZP_02899097.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389] gi|177651874|ref|ZP_02934457.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174] gi|190568892|ref|ZP_03021794.1| DNA-binding response regulator YycF [Bacillus anthracis Tsiankovskii-I] gi|196036153|ref|ZP_03103553.1| DNA-binding response regulator YycF [Bacillus cereus W] gi|196041965|ref|ZP_03109252.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99] gi|196045552|ref|ZP_03112783.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108] gi|206975866|ref|ZP_03236777.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97] gi|217962959|ref|YP_002341537.1| DNA-binding response regulator YycF [Bacillus cereus AH187] gi|218906658|ref|YP_002454492.1| DNA-binding response regulator YycF [Bacillus cereus AH820] gi|222098943|ref|YP_002533001.1| DNA-binding response regulator yycf [Bacillus cereus Q1] gi|225867447|ref|YP_002752825.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102] gi|227818235|ref|YP_002818244.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC 684] gi|229604878|ref|YP_002869675.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248] gi|254687093|ref|ZP_05150951.1| DNA-binding response regulator YycF [Bacillus anthracis str. CNEVA-9066] gi|254724124|ref|ZP_05185909.1| DNA-binding response regulator YycF [Bacillus anthracis str. A1055] gi|254735141|ref|ZP_05192851.1| DNA-binding response regulator YycF [Bacillus anthracis str. Western North America USA6153] gi|254742150|ref|ZP_05199837.1| DNA-binding response regulator YycF [Bacillus anthracis str. Kruger B] gi|254755940|ref|ZP_05207972.1| DNA-binding response regulator YycF [Bacillus anthracis str. Vollum] gi|254761652|ref|ZP_05213672.1| DNA-binding response regulator YycF [Bacillus anthracis str. Australia 94] gi|301056940|ref|YP_003795151.1| DNA-binding response regulator YycF [Bacillus anthracis CI] gi|30260162|gb|AAP29347.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames] gi|42740592|gb|AAS44515.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987] gi|47506200|gb|AAT34876.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames Ancestor'] gi|47554653|gb|EAL13007.1| response regulator [Bacillus cereus G9241] gi|49182230|gb|AAT57606.1| DNA-binding response regulator YycF [Bacillus anthracis str. Sterne] gi|49332024|gb|AAT62670.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978743|gb|AAU20293.1| response regulator [Bacillus cereus E33L] gi|118419719|gb|ABK88138.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|164711760|gb|EDR17304.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488] gi|167510623|gb|EDR86019.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193] gi|167528366|gb|EDR91137.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442] gi|170126440|gb|EDS95328.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389] gi|170666825|gb|EDT17591.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465] gi|172082578|gb|EDT67642.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174] gi|190559959|gb|EDV13942.1| DNA-binding response regulator YycF [Bacillus anthracis Tsiankovskii-I] gi|195991320|gb|EDX55288.1| DNA-binding response regulator YycF [Bacillus cereus W] gi|196023759|gb|EDX62435.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108] gi|196027220|gb|EDX65840.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99] gi|206745960|gb|EDZ57356.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97] gi|217065926|gb|ACJ80176.1| DNA-binding response regulator YycF [Bacillus cereus AH187] gi|218539027|gb|ACK91425.1| DNA-binding response regulator YycF [Bacillus cereus AH820] gi|221243002|gb|ACM15712.1| DNA-binding response regulator YycF [Bacillus cereus Q1] gi|225788895|gb|ACO29112.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102] gi|227004085|gb|ACP13828.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC 684] gi|229269286|gb|ACQ50923.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248] gi|300379109|gb|ADK08013.1| DNA-binding response regulator YycF [Bacillus cereus biovar anthracis str. CI] gi|324329417|gb|ADY24677.1| DNA-binding response regulator YycF [Bacillus thuringiensis serovar finitimus YBT-020] Length = 235 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 20/219 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ + DG +E ++ + E + ++ G+ LE+ R IR Sbjct: 23 LEKEGFEIVMAHDG-----------DEAIEKATEEQPDMVLLDIMLPGKDGLEVCREIRK 71 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122 S++P+I ++ S + + G DD V KP RE+LARV A RR K Sbjct: 72 SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 131 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N GPI + + + E L RE +L YL + G+ + + + ++G +D Sbjct: 132 NTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 190 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + V+ + +LR+K+ + + ++R +GY + Sbjct: 191 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229 >gi|330966561|gb|EGH66821.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 247 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 96/196 (48%), Gaps = 15/196 (7%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 VS+EG +L + + D+ ++ L GE + R +R P++ ++ Sbjct: 34 VSIEGNGALAASRIIDE--QPDLVILDLML--PGEDGFSICRTVRDRYDGPILMLTARTD 89 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN------NRAETGPIRVFSDG 137 + D+G DD V KP+H R +LAR+ A+ RR + R GP+ V + Sbjct: 90 DTDHIQGLDTGADDFVCKPVHPRVLLARIHALLRRSEAPQVPAAELRRLVFGPLVVDNAL 149 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 R+ ++ + L E +L L+AN G+ +++ +IF+A+ G+ + ++ ++ IS++ Sbjct: 150 REAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFTALRGVGYDG-QDRSIDVRISRI 208 Query: 198 RKKLRNKLGFDPVDSK 213 R K+G DP+ + Sbjct: 209 RP----KIGDDPIHPR 220 >gi|328468880|gb|EGF39840.1| DNA-binding response regulator [Vibrio parahaemolyticus 10329] Length = 218 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 3/145 (2%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IR ++P++ ++ ++ + D G DD + KP E+LAR+ + RR Sbjct: 60 LEVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQ 119 Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + G + + + L R E +IL LM N G+ +K Q+ +++ Sbjct: 120 SGSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNAGRVQSKEQLQQSLH 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203 G +DE +N +E HI LRKK N Sbjct: 180 G-WDEGSSDNAIEVHIHNLRKKAPN 203 >gi|309811888|ref|ZP_07705661.1| putative transcriptional regulatory protein PrrA [Dermacoccus sp. Ellin185] gi|308434177|gb|EFP58036.1| putative transcriptional regulatory protein PrrA [Dermacoccus sp. Ellin185] Length = 291 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 92/224 (41%), Gaps = 43/224 (19%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGV 95 WL S A DV I + G + + + +R + P++ ++ +D D+G Sbjct: 56 WLASEAEPDVIVICSARPGTHD--VPVVTALRGDGERAPILVMARRSESADLVDVLDAGA 113 Query: 96 DDVVNKPIHHREILARVAAIYRR--------LKVSN---NRAETGPIRVFSD------GR 138 DDVV P+ E+ AR+ A+ RR L+V +RA +R D G Sbjct: 114 DDVVTSPVPFAEVAARLRALTRRAPHLVEDELRVGTLRLDRAARVAVRTLDDATTSDAGS 173 Query: 139 DPEVQGEVFPLP----------------------RRERRILEYLMANRGKRVAKTQIFSA 176 D G+ P RE +LE LM N G V++ +I Sbjct: 174 DHASIGDALAEPGGATTRDVVSGAQGGEVAIDLTAREYAVLELLMRNAGHVVSRARIVDD 233 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D A N+V+ +S LR+KL G + + R +GY I Sbjct: 234 VWGGLDAAT-SNLVDQVVSHLRRKLDRPFGRHDITTVRGVGYRI 276 >gi|229553588|ref|ZP_04442313.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229313213|gb|EEN79186.1| response regulator [Lactobacillus rhamnosus LMS2-1] Length = 246 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 4/155 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA + VP+I ++ + Q + +G DD V KP E+ AR+ A RR + +A Sbjct: 89 IRAITSVPIIFLTARITDQDKVQGLGAGGDDYVTKPFSLTELGARIKAHVRRAHQPDKQA 148 Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G I + V L ++ +++E+L N G+ ++ Q++ I+G +D Sbjct: 149 QIAVFGRIMIDYHAHQVSVDTTCLKLENKQYQLIEWLSLNPGQVFSREQLYEKIWG-YDA 207 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E V+ HI ++RK P+ + +GY Sbjct: 208 QGDERVITEHIRRIRKLFDACQVTSPIVTVWGVGY 242 >gi|255532348|ref|YP_003092720.1| transcriptional regulator domain-containing protein [Pedobacter heparinus DSM 2366] gi|255345332|gb|ACU04658.1| transcriptional regulator domain protein [Pedobacter heparinus DSM 2366] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 2/166 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ + LP+ + + I ++ +L+ + D G DD + KP E+ +R+ AI Sbjct: 57 GDGLTLLPKAKKHNPDAAYIILTARGNLEDRIAGLDLGADDYLPKPFSLLELQSRMQAIA 116 Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + G ++ R G+ L R+E IL YL + + + + Q+ Sbjct: 117 RRKFNLKEELLPLGDFKLDLQKRLIFFNGQQIELSRKEFDILSYLFLHSNRVLTRMQLSE 176 Query: 176 AIYGLF-DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G F D+ + N +++HI +RKKL + +++ R +GY I Sbjct: 177 HIWGTFADDDYDSNYIDAHIKNIRKKLNAWAATNFLETVRGVGYRI 222 >gi|258405968|ref|YP_003198710.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] gi|257798195|gb|ACV69132.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] Length = 236 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 78/145 (53%), Gaps = 8/145 (5%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +RA S Q+P++ ++ + + + ++G DD + KP H +E+L RV + +R + Sbjct: 67 EVAREVRAVSPQLPILMLTARTTAKDRIQGLEAGADDYLTKPFHLKELLLRVQGMLKRKQ 126 Query: 121 VSNNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + P+ F + + + E F L RE +L+YL+ + G+ V++ ++ Sbjct: 127 WYQDVTQQEPVVRFGENTVNFATLRAQTRKEEFQLTAREAMVLKYLIEHEGRVVSRKELL 186 Query: 175 SAIYGLFDEAVEENVVESHISKLRK 199 ++ + + V+ V++ I++LRK Sbjct: 187 ENVWQV-EGTVQTRTVDAFIARLRK 210 >gi|239617104|ref|YP_002940426.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239505935|gb|ACR79422.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 226 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + ++ R + ++P+I ++ S + + G DD + KP + R ++AR+ A+ RR ++ Sbjct: 63 IKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYEMG 122 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N + G I + + G+ LPR+E +L+ ++ N GK + +I ++G Sbjct: 123 PKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + D + V+ HISKLR+ K+G + + + R +GY + Sbjct: 183 M-DFFGDFRTVDVHISKLRE----KIGSEFIKTVRGVGYKL 218 >gi|152969690|ref|YP_001334799.1| DNA-binding transcriptional regulator PhoP [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206579731|ref|YP_002239238.1| transcriptional regulatory protein PhoP [Klebsiella pneumoniae 342] gi|288936097|ref|YP_003440156.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|290510851|ref|ZP_06550221.1| two-component system, OmpR family, response regulator PhoP [Klebsiella sp. 1_1_55] gi|330016190|ref|ZP_08308420.1| virulence transcriptional regulatory protein PhoP [Klebsiella sp. MS 92-3] gi|150954539|gb|ABR76569.1| response regulator in two-component regulatory system with PhoQ, regulates gene expression at low [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206568789|gb|ACI10565.1| transcriptional regulatory protein PhoP [Klebsiella pneumoniae 342] gi|288890806|gb|ADC59124.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289777567|gb|EFD85565.1| two-component system, OmpR family, response regulator PhoP [Klebsiella sp. 1_1_55] gi|328529475|gb|EGF56380.1| virulence transcriptional regulatory protein PhoP [Klebsiella sp. MS 92-3] Length = 223 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%) Query: 58 EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 E L L R R+H +P++ ++ Q ++ +G DD V KP H E+ AR+ A+ Sbjct: 57 EDGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALL 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR +++ P +V R+ V + L E I+E L+ NRGK V+K + Sbjct: 117 RRNSGLASQVISLPPFQVDLSRRELSVNDQPIKLTAFEYTIMETLIRNRGKVVSKDSLML 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y E E + ++ + +LRKK++ + D + + R GY Sbjct: 177 QLYP-DAELRESHTIDVLMGRLRKKIQAEYPQDVITTVRGQGY 218 >gi|187478800|ref|YP_786824.1| two-component system response regulator [Bordetella avium 197N] gi|115423386|emb|CAJ49920.1| two-component system response regulator [Bordetella avium 197N] Length = 231 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 5/163 (3%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ R +RA +S +P++ ++ S++ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLRRLRARNSLLPVLILTAADSVEQRVKGLDLGADDYMAKPFALSELEARVRALTRRG 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + GR V L RE +LE L++ G+ V+KTQ+ + Sbjct: 120 AGGGSTLIRHGRLVFDQTGRVATVDDHALDLSAREVSLLEILLSRSGRMVSKTQLVDHLC 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E ++ +LRKKL G + + R LGY ++ Sbjct: 180 E-WGEEVSTNAIEVYVHRLRKKLEPS-GVKII-TVRGLGYCLE 219 >gi|15641643|ref|NP_231275.1| DNA-binding response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121591202|ref|ZP_01678505.1| DNA-binding response regulator [Vibrio cholerae 2740-80] gi|121728924|ref|ZP_01681931.1| DNA-binding response regulator [Vibrio cholerae V52] gi|147675175|ref|YP_001217188.1| DNA-binding response regulator [Vibrio cholerae O395] gi|153216915|ref|ZP_01950679.1| DNA-binding response regulator [Vibrio cholerae 1587] gi|153801571|ref|ZP_01956157.1| DNA-binding response regulator [Vibrio cholerae MZO-3] gi|153819736|ref|ZP_01972403.1| DNA-binding response regulator [Vibrio cholerae NCTC 8457] gi|153823944|ref|ZP_01976611.1| DNA-binding response regulator [Vibrio cholerae B33] gi|153826176|ref|ZP_01978843.1| DNA-binding response regulator [Vibrio cholerae MZO-2] gi|153830672|ref|ZP_01983339.1| DNA-binding response regulator [Vibrio cholerae 623-39] gi|227081790|ref|YP_002810341.1| DNA-binding response regulator [Vibrio cholerae M66-2] gi|229508249|ref|ZP_04397754.1| DNA-binding response regulator [Vibrio cholerae BX 330286] gi|229511512|ref|ZP_04400991.1| DNA-binding response regulator [Vibrio cholerae B33] gi|229515034|ref|ZP_04404494.1| DNA-binding response regulator [Vibrio cholerae TMA 21] gi|229518651|ref|ZP_04408094.1| DNA-binding response regulator [Vibrio cholerae RC9] gi|229520763|ref|ZP_04410186.1| DNA-binding response regulator [Vibrio cholerae TM 11079-80] gi|229523733|ref|ZP_04413138.1| DNA-binding response regulator [Vibrio cholerae bv. albensis VL426] gi|229529329|ref|ZP_04418719.1| DNA-binding response regulator [Vibrio cholerae 12129(1)] gi|229607823|ref|YP_002878471.1| DNA-binding response regulator [Vibrio cholerae MJ-1236] gi|254226103|ref|ZP_04919700.1| DNA-binding response regulator [Vibrio cholerae V51] gi|254285418|ref|ZP_04960383.1| DNA-binding response regulator [Vibrio cholerae AM-19226] gi|254848758|ref|ZP_05238108.1| DNA-binding response regulator [Vibrio cholerae MO10] gi|255744933|ref|ZP_05418883.1| two-component system response regulator QseB [Vibrio cholera CIRS 101] gi|262161782|ref|ZP_06030800.1| two-component system response regulator QseB [Vibrio cholerae INDRE 91/1] gi|262169653|ref|ZP_06037344.1| two-component system response regulator QseB [Vibrio cholerae RC27] gi|262190570|ref|ZP_06048811.1| two-component system response regulator QseB [Vibrio cholerae CT 5369-93] gi|297579217|ref|ZP_06941145.1| DNA-binding response regulator [Vibrio cholerae RC385] gi|298498279|ref|ZP_07008086.1| DNA-binding response regulator [Vibrio cholerae MAK 757] gi|9656150|gb|AAF94789.1| DNA-binding response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121546957|gb|EAX57105.1| DNA-binding response regulator [Vibrio cholerae 2740-80] gi|121628810|gb|EAX61272.1| DNA-binding response regulator [Vibrio cholerae V52] gi|124114064|gb|EAY32884.1| DNA-binding response regulator [Vibrio cholerae 1587] gi|124122898|gb|EAY41641.1| DNA-binding response regulator [Vibrio cholerae MZO-3] gi|125621338|gb|EAZ49675.1| DNA-binding response regulator [Vibrio cholerae V51] gi|126509727|gb|EAZ72321.1| DNA-binding response regulator [Vibrio cholerae NCTC 8457] gi|126518538|gb|EAZ75761.1| DNA-binding response regulator [Vibrio cholerae B33] gi|146317058|gb|ABQ21597.1| DNA-binding response regulator [Vibrio cholerae O395] gi|148873852|gb|EDL71987.1| DNA-binding response regulator [Vibrio cholerae 623-39] gi|149740117|gb|EDM54282.1| DNA-binding response regulator [Vibrio cholerae MZO-2] gi|150424690|gb|EDN16626.1| DNA-binding response regulator [Vibrio cholerae AM-19226] gi|227009678|gb|ACP05890.1| DNA-binding response regulator [Vibrio cholerae M66-2] gi|227013546|gb|ACP09756.1| DNA-binding response regulator [Vibrio cholerae O395] gi|229333103|gb|EEN98589.1| DNA-binding response regulator [Vibrio cholerae 12129(1)] gi|229337314|gb|EEO02331.1| DNA-binding response regulator [Vibrio cholerae bv. albensis VL426] gi|229342318|gb|EEO07313.1| DNA-binding response regulator [Vibrio cholerae TM 11079-80] gi|229343340|gb|EEO08315.1| DNA-binding response regulator [Vibrio cholerae RC9] gi|229347739|gb|EEO12698.1| DNA-binding response regulator [Vibrio cholerae TMA 21] gi|229351477|gb|EEO16418.1| DNA-binding response regulator [Vibrio cholerae B33] gi|229355754|gb|EEO20675.1| DNA-binding response regulator [Vibrio cholerae BX 330286] gi|229370478|gb|ACQ60901.1| DNA-binding response regulator [Vibrio cholerae MJ-1236] gi|254844463|gb|EET22877.1| DNA-binding response regulator [Vibrio cholerae MO10] gi|255737404|gb|EET92799.1| two-component system response regulator QseB [Vibrio cholera CIRS 101] gi|262021887|gb|EEY40597.1| two-component system response regulator QseB [Vibrio cholerae RC27] gi|262028514|gb|EEY47169.1| two-component system response regulator QseB [Vibrio cholerae INDRE 91/1] gi|262033557|gb|EEY52054.1| two-component system response regulator QseB [Vibrio cholerae CT 5369-93] gi|297536811|gb|EFH75644.1| DNA-binding response regulator [Vibrio cholerae RC385] gi|297542612|gb|EFH78662.1| DNA-binding response regulator [Vibrio cholerae MAK 757] gi|327484248|gb|AEA78655.1| Two-component system response regulator QseB [Vibrio cholerae LMA3894-4] Length = 219 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 22/219 (10%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL + G++ DG+ + EEW DV ++ L K + + L I Sbjct: 19 ALEQTGWVPELAQDGI--DALYRATAEEW-------DVIVLDLGL-PKLDGLTVLKGIRD 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 + P++ +S +L ++ ++G DD + KP E++AR+ A RR S N + Sbjct: 69 ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPV 126 Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 + S D R +V QG+ L E +++ Y M N K +++T++ IY FD Sbjct: 127 MQVGDLSLDTRTSKVMWQGQAVSLTALEYKVIAYFMHNPEKVISRTELVEHIYKQDFDR- 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + N +E I ++RK K+ D + + R LGY + N Sbjct: 186 -DSNTIEVFIGRIRK----KIAPDVIKTVRGLGYQLHAN 219 >gi|302134399|ref|ZP_07260389.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331016767|gb|EGH96823.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 245 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 11/167 (6%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE + R +R P++ ++ + D+G DD V KP+H R +LAR+ Sbjct: 57 LMLPGEDGFSICRTVRDRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARI 116 Query: 113 AAIYRRLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 A+ RR + R GP+ V + R+ ++ + L E +L L+AN G+ Sbjct: 117 HALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGR 176 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +++ +IF+A+ G+ + ++ ++ IS++R K+G DP+ + Sbjct: 177 TLSREEIFTALRGVGYDG-QDRSIDVRISRIRP----KIGDDPIHPR 218 >gi|282849614|ref|ZP_06258998.1| response regulator receiver domain protein [Veillonella parvula ATCC 17745] gi|282580551|gb|EFB85950.1| response regulator receiver domain protein [Veillonella parvula ATCC 17745] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 2/149 (1%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129 + P++ ++ SLQ + ++G DD + KP E+ AR+ A+ RR + + N G Sbjct: 71 NTTPVLLLTAKNSLQDKVTGLNTGADDYLVKPFDLEELTARIYALARRNARHAQNDIHVG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P+ + R + GE L +E +L YL +N +++ QI ++ +D N+ Sbjct: 131 PLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE-YDYESYSNL 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ +I LRKK+ + + R +GY Sbjct: 190 IDVYIKDLRKKIDTDENVKLIQTVRGVGY 218 >gi|260776875|ref|ZP_05885769.1| DNA-binding response regulator [Vibrio coralliilyticus ATCC BAA-450] gi|260606541|gb|EEX32815.1| DNA-binding response regulator [Vibrio coralliilyticus ATCC BAA-450] Length = 232 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 11/149 (7%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ + IR+ + P++ +S S++ ++ +G DD + KP E+LARV + R Sbjct: 60 LQMVKAIRSSGKETPILILSALDSVEERVNGLRNGCDDYLVKPFAFSELLARVELLALRA 119 Query: 120 KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 SN+ + V D R + V RE +IL+YLM N G+ + + + Sbjct: 120 N-SNSDKTDSQVLVIDDLELDLLSRQAKRGDTVISFNNREFQILQYLMNNAGRVITRAML 178 Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKL 201 ++ FD + NV++ HIS+LRKK+ Sbjct: 179 LEKVWSFSFDP--QTNVIDVHISRLRKKI 205 >gi|256786504|ref|ZP_05524935.1| two component system response regulator [Streptomyces lividans TK24] Length = 222 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/207 (24%), Positives = 99/207 (47%), Gaps = 20/207 (9%) Query: 31 SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78 +L +E W SA + A++ ++ + + L R+ R VP++ + Sbjct: 14 ALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGLSVLGRLRRDLPDVPVLFL 73 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134 + +++ + +G DD V KP E++AR+ + RR ++ R+++ G + + Sbjct: 74 TAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAADRRSDSVLVVGDLTLD 133 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D + G+ L E +L +LM N + ++K QI ++ +D + NVVE +I Sbjct: 134 EDSHEVTRSGDGIHLTATEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 192 Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220 S LR+K+ G +P + ++R GY I Sbjct: 193 SYLRRKI--DAGREPMIHTRRGAGYLI 217 >gi|291301488|ref|YP_003512766.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570708|gb|ADD43673.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 235 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 5/141 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R++R S VP+I S + ++G DD V KP +LAR+AA+ RR + S+ Sbjct: 65 RMLRGVSNVPVIIASARRGETDIIKLLNAGADDYVTKPFSAAHLLARIAAVLRRHESSDT 124 Query: 125 RAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 GP+ V + G L RRE +L YL + G+ V+K ++ ++ Sbjct: 125 AKSVLITVGPLSVDQSRHVAALDGNELELTRREFSLLTYLARHAGRVVSKQELVEQVWRQ 184 Query: 181 FDEAVEENVVESHISKLRKKL 201 E V+ H+S LR+KL Sbjct: 185 PYIGAEAT-VDVHVSWLRRKL 204 >gi|218133615|ref|ZP_03462419.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC 43243] gi|217990990|gb|EEC56996.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC 43243] Length = 228 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 74/140 (52%), Gaps = 3/140 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +S+VP+I ++ + L F+ GVD+ ++KP + + ARV AI RR+ + Sbjct: 74 IRRNSKVPIIMLTAKGEERDELQGFELGVDEYISKPFSPKILTARVDAIIRRVYSKDAGE 133 Query: 127 ETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + D ++ G+ L +E +LEY + N+G +++ +I + ++ +D Sbjct: 134 IIEIGGIEMDKSAHVVKIDGQKIDLSFKEFELLEYFIDNKGIALSREKILNNVWN-YDYF 192 Query: 185 VEENVVESHISKLRKKLRNK 204 + +++H+ KLRKK+ K Sbjct: 193 GDARTIDTHVKKLRKKMGEK 212 >gi|196035783|ref|ZP_03103186.1| DNA-binding response regulator [Bacillus cereus W] gi|195991750|gb|EDX55715.1| DNA-binding response regulator [Bacillus cereus W] Length = 225 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQHAQIQYHGILWDEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D+ K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220 >gi|163752506|ref|ZP_02159693.1| transcriptional regulatory protein PhoP [Shewanella benthica KT99] gi|161327598|gb|EDP98795.1| transcriptional regulatory protein PhoP [Shewanella benthica KT99] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 79/154 (51%), Gaps = 3/154 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127 A + P++ ++ + Q ++ ++G DD + KP E++AR+ A+ RR + Sbjct: 69 AGLKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVRPKIT 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 +G + + + ++G + E ILEYLM + + VAK ++ IYG D+ + Sbjct: 129 SGDLELDLAAKQLSMKGVPMDITAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDP 186 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 N +E +S+LRKKL + +P+ + R GY + Sbjct: 187 NTIEVMVSRLRKKLTKEGLENPIATIRGQGYKFN 220 >gi|157374930|ref|YP_001473530.1| two component transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157317304|gb|ABV36402.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 224 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 3/154 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127 A + P++ ++ + Q ++ ++G DD + KP E++AR+ A+ RR + Sbjct: 69 AGLKAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPQIT 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 +G + V + + E + E ILEYLM + + VAK ++ IYG D+ + Sbjct: 129 SGALEVDLAAKQVSLNNEPMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDP 186 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 N +E +S+LRKKL +PV + R GY + Sbjct: 187 NTIEVMVSRLRKKLTKGGIENPVVTIRGQGYKFN 220 >gi|153815995|ref|ZP_01968663.1| hypothetical protein RUMTOR_02240 [Ruminococcus torques ATCC 27756] gi|145846642|gb|EDK23560.1| hypothetical protein RUMTOR_02240 [Ruminococcus torques ATCC 27756] Length = 208 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 6/149 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G L+L IR P+I ++ S Q ++ +G DD + KP E+LAR++A Sbjct: 41 GMNGLDLCVSIRDFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHL 100 Query: 117 RRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR + S+N+ ++ I +SD R ++G L +E I++ L +N G+ + + Sbjct: 101 RREQRSHNKTKSKFSEDLIIDYSD-RSLYIKGHKIELSNKEFEIIQLLSSNAGQVFDREK 159 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I+ I+G+ D + V++ HI K+R K Sbjct: 160 IYENIWGI-DGNGDSVVIKEHIRKIRLKF 187 >gi|159045664|ref|YP_001534458.1| transcriptional regulatory protein QseB [Dinoroseobacter shibae DFL 12] gi|157913424|gb|ABV94857.1| transcriptional regulatory protein QseB [Dinoroseobacter shibae DFL 12] Length = 221 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 99/222 (44%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKV 60 F+LI+D A + I DG ++ +S+ E W ++ D+ ++ ++ G+ Sbjct: 3 FLLIEDHAPLARAVIDRLSLDGHVVDHADSMT-EAWDFMATTSYDLILLD-IMLPDGDGR 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R P+I ++ + + D G DD + KPI E+ AR A+ RR Sbjct: 61 AFLRRCRETAEATPVIVLTARSEVSDRVSILDLGADDYMVKPIDFSELEARCRAVLRRRG 120 Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S NR + + E G V L RE R+ E G+ +K + ++ Sbjct: 121 GSAANRLALADLVFDALAGTLETAGGVVQLRTRELRLFETFANAPGQIFSKPALVDRLFS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FDE V EN +E ++++LR+ L + + + R LGY +D Sbjct: 181 -FDEDVTENAIEVYVARLRRHLEHSSV--RITTVRGLGYKLD 219 >gi|28898508|ref|NP_798113.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153836151|ref|ZP_01988818.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ3810] gi|260365049|ref|ZP_05777620.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030] gi|260879555|ref|ZP_05891910.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034] gi|260894970|ref|ZP_05903466.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466] gi|260901020|ref|ZP_05909415.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037] gi|28806726|dbj|BAC59997.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|149750426|gb|EDM61171.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ3810] gi|308086020|gb|EFO35715.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466] gi|308093370|gb|EFO43065.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034] gi|308110777|gb|EFO48317.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037] gi|308111621|gb|EFO49161.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030] Length = 218 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 3/145 (2%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IR ++P++ ++ ++ + D G DD + KP E+LAR+ + RR Sbjct: 60 LEVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQ 119 Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + G + + + L R E +IL LM N G+ +K Q+ +++ Sbjct: 120 SGSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNAGRVQSKEQLQQSLH 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203 G +DE +N +E HI LRKK N Sbjct: 180 G-WDEGSSDNAIEVHIHNLRKKAPN 203 >gi|116618064|ref|YP_818435.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096911|gb|ABJ62062.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 223 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 3/152 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 + + +P++ ++ +Q+ F SG+DD + KPI E+L RV A+ RR V+N+R Sbjct: 69 KINPNIPILFVTAKDDIQSKQRGFSSGIDDYMVKPIDMSEMLMRVTALLRRAHVANDRKL 128 Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 T G + +D V + + RE IL L++ K +++Q+ +G+ D Sbjct: 129 TIGNTVLDADSVSIMVDSQEISVTVREFNILFKLLSYPNKTFSRSQLLDEFWGV-DTTTG 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ +I+KLR K F+ + + LGY Sbjct: 188 LRAVDVYITKLRDKFSGSDVFE-ITTVHGLGY 218 >gi|262039513|ref|ZP_06012815.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii F0264] gi|261746494|gb|EEY34031.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii F0264] Length = 225 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 17/149 (11%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 E+ + +R+ + P++ ++ S++ + DSG +D + KP E+LAR+ + R+ Sbjct: 61 EVLKTMRSKNIDTPVLFLTAKDSIEDRVKGLDSGANDYLTKPFAFEELLARIRVMLRKDS 120 Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V+N +T VF D D ++ L +RE ILEY++ NRGK ++K + Sbjct: 121 NSSGNVFTVANLTVDTNSHSVFRD--DIPIK-----LSKREFTILEYMIRNRGKILSKDK 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I I+ +D NV+E +I LRKK+ Sbjct: 174 IEQHIWN-YDYEGGSNVIEVYIRYLRKKI 201 >gi|229075281|ref|ZP_04208274.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|228707832|gb|EEL60012.1| Two-component response regulator [Bacillus cereus Rock4-18] Length = 228 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 78/143 (54%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121 IR +P+I +S + SG DD ++KP + E++ARV + RR K + Sbjct: 68 IREDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTPI 127 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N++ E G + V +D R V+G+ L +E ILE L+ N+G ++ +I+ A++ Sbjct: 128 DHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLVRNKGIVLSVAKIYEAVWK 187 Query: 180 -LFDEAVEENVVESHISKLRKKL 201 +F ++ +N V HI+K+R K+ Sbjct: 188 EVFYKS--DNTVMVHITKIRDKI 208 >gi|199597045|ref|ZP_03210478.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|199592178|gb|EDZ00252.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] Length = 226 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 4/155 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA + VP+I ++ + Q + +G DD V KP E+ AR+ A RR + +A Sbjct: 69 IRAITSVPIIFLTARITDQDKVQGLGAGGDDYVTKPFSLTELGARIKAHVRRAHQPDKQA 128 Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G I + V L ++ +++E+L N G+ ++ Q++ I+G +D Sbjct: 129 QIAVFGRIMIDYHAHQVSVDTTCLKLENKQYQLIEWLSLNPGQVFSREQLYEKIWG-YDA 187 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E V+ HI ++RK P+ + +GY Sbjct: 188 QGDERVITEHIRRIRKLFDACQVTSPIVTVWGVGY 222 >gi|153815304|ref|ZP_01967972.1| hypothetical protein RUMTOR_01538 [Ruminococcus torques ATCC 27756] gi|317501662|ref|ZP_07959853.1| winged helix family Two component transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|331088455|ref|ZP_08337370.1| hypothetical protein HMPREF1025_00953 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847366|gb|EDK24284.1| hypothetical protein RUMTOR_01538 [Ruminococcus torques ATCC 27756] gi|316896913|gb|EFV18993.1| winged helix family Two component transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|330408222|gb|EGG87710.1| hypothetical protein HMPREF1025_00953 [Lachnospiraceae bacterium 3_1_46FAA] Length = 230 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 6/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP+I IS + + G DD V KP + A+V A+ RR + + Sbjct: 67 IRKISNVPVIFISSAADNMNIIMAVNMGGDDFVPKPFDLSVLTAKVQAVLRRTYDLSGKV 126 Query: 127 ----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 G I +D GE L + E RIL+ LM N+G+ V++ + + ++ D Sbjct: 127 PVLEHQGAILNLNDA-SLTYNGEKIDLTKNEFRILQTLMENKGRLVSRDTLMTRLWET-D 184 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +EEN + +I++LR+KL D + +K GY I Sbjct: 185 NYIEENTLTVNIARLRRKLDKAGLTDFISTKVGEGYII 222 >gi|146313065|ref|YP_001178139.1| DNA-binding transcriptional regulator QseB [Enterobacter sp. 638] gi|145319941|gb|ABP62088.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 219 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 96/206 (46%), Gaps = 13/206 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D L+ DG A G S++ F + SA D ++ L G L Sbjct: 3 ILLVEDDKLIGDGLKAGLTKMGFSVDWFTDGGTGKTALYSAPYDAVVLDLTL--PGMDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R R + P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 61 DILREWREKGRSEPVLILTARDALYQRVEGLRLGADDYLCKPFALVEVAARLEALVRR-S 119 Query: 121 VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+E +R + DP ++ GE PL +E +LE LM N G+ + + I Sbjct: 120 HGQTRSE---LRHGNVTLDPVSLVAKLDGETLPLKPKEFALLELLMRNAGRVLPRKNIEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +Y +D+ V N VE H+ LR+KL Sbjct: 177 KLY-TWDDDVSSNAVEVHVHHLRRKL 201 >gi|114706443|ref|ZP_01439345.1| two-component phosphate transcriptional regulator PhoB [Fulvimarina pelagi HTCC2506] gi|114538304|gb|EAU41426.1| two-component phosphate transcriptional regulator PhoB [Fulvimarina pelagi HTCC2506] Length = 246 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 5/154 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNRAE 127 +Q+P+I ++ + G DD V KP RE ARV A+ RR KV++ + Sbjct: 75 AQLPVIMLTARGEESERVQGLSVGADDYVVKPFSMREFTARVKAMMRRASPEKVASVLS- 133 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + + G L E ++LE+LM G+ + Q+ ++G D V+E Sbjct: 134 AGDLELDRSAHRVRRAGRELRLGPTEFKLLEFLMQAPGRVFTREQLLDGVWG-RDIYVDE 192 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V+ H+ +LRK + DP+ + R GY++D Sbjct: 193 RTVDVHVGRLRKAINRARDRDPIRTVRGAGYALD 226 >gi|313496697|gb|ADR58063.1| DNA-binding response regulator CreB [Pseudomonas putida BIRD-1] Length = 255 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 107/226 (47%), Gaps = 17/226 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLE--GFNSLEFEEWLQSSAREDVSAIEAFLIGKGE- 58 ++++D A + D + DG S E S ++ Q A D+ ++ IG + Sbjct: 33 ILIVEDEAAIADTLVYALQADGHSTEWVTLGSAALDQQRQRPA--DLVILD---IGLPDI 87 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E R +R ++VP++ +S + + G DD V KP RE+ ARV AI +R Sbjct: 88 SGFETCRQLRRFTEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKR 147 Query: 119 LKVSNNRAE-TGPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + RAE G +F D ++ + + L R E R+L+ L+ + ++ Q+ Sbjct: 148 MA---PRAEAAGGTSLFQLDTLRMQITYRSQPLTLTRHEFRLLQCLLEQPQRVFSREQLL 204 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A+ G+ + E ++SHI LR KLR G +P+ + R LGYS Sbjct: 205 DAL-GVASDVGYERTIDSHIKSLRAKLRQVAGDAEPIQTHRGLGYS 249 >gi|238894177|ref|YP_002918911.1| DNA-binding transcriptional regulator PhoP [Klebsiella pneumoniae NTUH-K2044] gi|238546493|dbj|BAH62844.1| response regulator in two-component regulatory system with PhoQ [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 237 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%) Query: 58 EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 E L L R R+H +P++ ++ Q ++ +G DD V KP H E+ AR+ A+ Sbjct: 71 EDGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALL 130 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR +++ P +V R+ V + L E I+E L+ NRGK V+K + Sbjct: 131 RRNSGLASQVISLPPFQVDLSRRELSVNDQPIKLTAFEYTIMETLIRNRGKVVSKDSLML 190 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y E E + ++ + +LRKK++ + D + + R GY Sbjct: 191 QLYP-DAELRESHTIDVLMGRLRKKIQAEYPQDVITTVRGQGY 232 >gi|229171119|ref|ZP_04298714.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3] gi|228612357|gb|EEK69584.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3] Length = 237 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 11/150 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 63 IEVCRKLRDKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122 Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V SN A+ I F + E L +E +L++ +N G+ KTQ Sbjct: 123 VLGSNTTAQEKTILAFKGLTIDLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 +F ++ D +E +N V HI KLRKK+ Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKI 210 >gi|254427358|ref|ZP_05041065.1| phosphate regulon transcriptional regulatory protein PhoB [Alcanivorax sp. DG881] gi|196193527|gb|EDX88486.1| phosphate regulon transcriptional regulatory protein PhoB [Alcanivorax sp. DG881] Length = 234 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 15/151 (9%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 ++VP+I ++ + D G DD + KP RE+++R+ A+ RR +++ A Sbjct: 76 NEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAVLRR---ASSVAAEKA 132 Query: 131 IRVFSDGRDP---EVQGEVFPLPR--RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 I V DP + + +P+ E R+LE+ M+++ + ++TQ+ ++G + V Sbjct: 133 IEVEGLCLDPVSHRISADDYPVDMGPTEYRLLEFFMSHQERAYSRTQLLDQVWGA-NVYV 191 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 E+ ++ HI +LRK L P D RF+ Sbjct: 192 EDRTIDVHIRRLRKALA------PFDYDRFI 216 >gi|330880142|gb|EGH14291.1| DNA-binding response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 245 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 11/167 (6%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE + R +R P++ ++ + D+G DD V KP+H R +LAR+ Sbjct: 57 LMLPGEDGFSICRTVRDRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARI 116 Query: 113 AAIYRRLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 A+ RR + R GP+ V + R+ ++ + L E +L L+AN G+ Sbjct: 117 HALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGR 176 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +++ +IF+A+ G+ + ++ ++ IS++R K+G DP+ + Sbjct: 177 TLSREEIFTALRGVGYDG-QDRSIDVRISRIRP----KIGDDPIHPR 218 >gi|288905747|ref|YP_003430969.1| essential two-component response regulator [Streptococcus gallolyticus UCN34] gi|306831845|ref|ZP_07465001.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978780|ref|YP_004288496.1| two-component response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732473|emb|CBI14045.1| conserved essential two-component response regulator [Streptococcus gallolyticus UCN34] gi|304426043|gb|EFM29159.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178708|emb|CBZ48752.1| two-component response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 236 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + +R S +P+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 61 LEVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120 Query: 121 ------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 SN+ G +++ D + +GE L RE +L +L + G+ + Sbjct: 121 NIETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVM 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ I +LR+K+ + Sbjct: 181 TREYLLETVWG-YDYFGDVRTVDVTIRRLREKIED 214 >gi|284046896|ref|YP_003397236.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951117|gb|ADB53861.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 251 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 78/155 (50%), Gaps = 9/155 (5%) Query: 54 IGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 +G G E+ R +RA V P+I ++ S + ++G DD V KP E+ +R+ Sbjct: 76 LGSGPNGYEVCRTLRARRNVVPIIMLTALDSEADAVLGLEAGADDYVTKPFGLAELRSRI 135 Query: 113 AAIYRR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 A+ RR + S++ E GPI + R+ + GE + E +LE LMA+ G+ Sbjct: 136 RAVLRRAGPRPMGASDDLVEVGPIALDRARREVRMNGEPVHVTFSEFELLEALMADPGRL 195 Query: 168 VAKTQIFSAIYGLFDEAVEE-NVVESHISKLRKKL 201 + ++ AI+G D A + ++ H+ LR+KL Sbjct: 196 RNRQELLRAIWG--DSAYRDPRAIDVHVRHLREKL 228 >gi|269957713|ref|YP_003327502.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306394|gb|ACZ31944.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 243 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 12/158 (7%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS----NNRAE 127 P++ ++ Q + G DD V KP E++AR+ A+ RR S + Sbjct: 78 HTPVVFLTAKDDTQDKVQGLTVGGDDYVTKPFSLEEVVARIRAVLRRTSGSLPDDDALLR 137 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + + D + G L E ++L YLM N G+ ++K QI ++ +D + Sbjct: 138 VGDLEMDEDSHEVRRAGIEVDLSPTEFKLLRYLMLNAGRVLSKAQILDHVWQ-YDWGGDA 196 Query: 188 NVVESHISKLRKKLRNKL--GFDP-----VDSKRFLGY 218 N+VES+IS LR+K+ N G D + +KR +GY Sbjct: 197 NIVESYISYLRRKIDNVTVPGTDEALPALIHTKRGIGY 234 >gi|224024386|ref|ZP_03642752.1| hypothetical protein BACCOPRO_01110 [Bacteroides coprophilus DSM 18228] gi|224017608|gb|EEF75620.1| hypothetical protein BACCOPRO_01110 [Bacteroides coprophilus DSM 18228] Length = 225 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 4/150 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G +LE + + + V ++ D SL+ + D G DD + KP H E+ AR+ + Sbjct: 57 GSGLDLLEELKAMGKRTNVIILSAKD--SLEDKVQGLDLGADDYLPKPFHLAELHARIKS 114 Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR + ++ G I VF D V+G+ L R+E IL Y M G+ V K + Sbjct: 115 LLRRNQREGEQSLRFGNIEVFPDRFRVMVEGKEVDLNRKEYDILYYFMCRPGRLVNKNTL 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLR 202 +++G D+ + + + I LRK+L+ Sbjct: 175 AESVWGDHIDQVDNFDFIYTQIKNLRKRLK 204 >gi|206560503|ref|YP_002231267.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|198036544|emb|CAR52441.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 224 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 12/187 (6%) Query: 41 SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 SA D ++ L G G +L R + + P++ +S + + +G DD + Sbjct: 42 SASYDAITLDRMLPGADGLAILTAMRTVGIDT--PVLMLSALGDVDERIRGLRAGGDDYL 99 Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERR 155 KP E+ AR+ + RR + S +T G + + R + PL E R Sbjct: 100 TKPFDSGELSARIEVLLRRRQASGVPQQTLLKVGALELDLISRCARRGADEIPLLPTEFR 159 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSK 213 +LE++M N G+ + +T +F A++G FD N+++ H+ +LRKK+ + G +P + + Sbjct: 160 VLEFMMRNAGQTITRTMLFEAVWGYHFDPGT--NLIDVHMGRLRKKI-DPPGANPMIQTV 216 Query: 214 RFLGYSI 220 R GY + Sbjct: 217 RGSGYML 223 >gi|253699586|ref|YP_003020775.1| transcriptional regulator [Geobacter sp. M21] gi|251774436|gb|ACT17017.1| two component transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 223 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 2/145 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G LE+ + IR S++P+I I+ L + G DD + KP RE++ARV + Sbjct: 58 GRDGLEICKEIRTFSRLPIIMITARVEEIDRLLGLELGADDYICKPFSPREVVARVKTVL 117 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR A+T + + +D G L E ++L +L N G+ +++Q+ Sbjct: 118 RRTG-EQAPAQTHGLTLDADRYLARFHGHDLELTVVEFKLLHFLYQNPGRIYSRSQLMDR 176 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 IY V + ++SHI KLRKK+ Sbjct: 177 IYS-DQRIVSDRTIDSHIKKLRKKI 200 >gi|154483403|ref|ZP_02025851.1| hypothetical protein EUBVEN_01106 [Eubacterium ventriosum ATCC 27560] gi|149735655|gb|EDM51541.1| hypothetical protein EUBVEN_01106 [Eubacterium ventriosum ATCC 27560] Length = 222 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 111/231 (48%), Gaps = 22/231 (9%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M L++D + +++ I G+ +GF + E+ ++ E+ S + ++ E Sbjct: 1 MIYLVEDDSSIRELVIYALNSTGLEAKGFE--KPSEFWKAVEEEEPSLVILDVMLPEESG 58 Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +++ + IR++ ++P+I + S ++ +SG DD ++KP E++ARV A+ R Sbjct: 59 IDVLKKIRSNPAIEKLPVIMETAKTSEYDRINGLESGADDYISKPFSMMEMVARVKALIR 118 Query: 118 RLKVSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R + + N PI+ D EV L +E +L L+ NRG +++ Sbjct: 119 RSEYKHEEKDYTINNLYVCPIKHLVKVDDREV-----VLTLKEYEMLCLLLKNRGIVLSR 173 Query: 171 TQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Q+ + I+G FD E V+ H+ LR+KL D + + R +GY I Sbjct: 174 EQLLNKIWGYSFDG--ESRTVDVHVRTLRQKLGT--AGDVIKTIRGVGYKI 220 >gi|49081852|gb|AAT50326.1| PA5360 [synthetic construct] Length = 230 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 100/213 (46%), Gaps = 24/213 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 +++DD A +++ IA+ + + G+ LE E Q+ A + D+ ++ L Sbjct: 6 ILIVDDEAPIRE-MIAV----ALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWML--P 58 Query: 57 GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ +P+I ++ + G DD + KP RE++AR+ Sbjct: 59 GTSGIELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLGVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR ++ A PI V DP + G+ + E R+L++ M ++ + Sbjct: 119 AVLRRTGPGDSEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ ++G + VEE V+ HI +LRK L Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207 >gi|16126989|ref|NP_421553.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|221235781|ref|YP_002518218.1| two-component response regulator [Caulobacter crescentus NA1000] gi|13424351|gb|AAK24721.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|220964954|gb|ACL96310.1| two-component response regulator [Caulobacter crescentus NA1000] Length = 223 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 11/170 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G V+E R R Q P++ +S + + +G DD + KP E++ARV A+ Sbjct: 59 GVTVVETLR--REGDQTPVLFLSALGEVNDRVVGLKAGADDYLVKPYAFPELMARVEALS 116 Query: 117 RRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + + G + + R QG+ L RE ++LE++M + G+ V +T + Sbjct: 117 RRRETGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLL 176 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221 ++ FD + NV++ HIS+LR K+ GFD + + R GY +D Sbjct: 177 EKVWEYHFDP--QTNVIDVHISRLRSKIDK--GFDRAMLQTVRGAGYRLD 222 >gi|228918078|ref|ZP_04081606.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930472|ref|ZP_04093472.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936746|ref|ZP_04099537.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228949188|ref|ZP_04111456.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228988693|ref|ZP_04148779.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229094577|ref|ZP_04225644.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|229124969|ref|ZP_04254143.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|229142215|ref|ZP_04270739.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|229159026|ref|ZP_04287082.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|229187695|ref|ZP_04314831.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|229199595|ref|ZP_04326256.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|228584000|gb|EEK42157.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|228595763|gb|EEK53447.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|228624445|gb|EEK81216.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|228641233|gb|EEK97540.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|228658470|gb|EEL14136.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|228688824|gb|EEL42655.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|228771144|gb|EEM19624.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228810471|gb|EEM56824.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228822955|gb|EEM68796.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829191|gb|EEM74828.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841558|gb|EEM86674.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 234 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 20/219 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ + DG +E ++ + E + ++ G+ LE+ R IR Sbjct: 22 LEKEGFEIVMAHDG-----------DEAIEKATEEQPDMVLLDIMLPGKDGLEVCREIRK 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122 S++P+I ++ S + + G DD V KP RE+LARV A RR K Sbjct: 71 SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 130 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N GPI + + + E L RE +L YL + G+ + + + ++G +D Sbjct: 131 NTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 189 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + V+ + +LR+K+ + + ++R +GY + Sbjct: 190 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228 >gi|225388704|ref|ZP_03758428.1| hypothetical protein CLOSTASPAR_02440 [Clostridium asparagiforme DSM 15981] gi|225045216|gb|EEG55462.1| hypothetical protein CLOSTASPAR_02440 [Clostridium asparagiforme DSM 15981] Length = 226 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 3/138 (2%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R P+I + + +D D+G DD + KP E+LAR+ A+ RR + AE Sbjct: 68 RKQIATPVIITTALDGVNDRIDGLDAGADDYLVKPYAVGELLARIRAVTRRPGNFHAGAE 127 Query: 128 T--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 IR+ +D R+ G L +RE ++EYL+ G+ + + I + I+G+ D V Sbjct: 128 KCFADIRLDADRRELSGPGGTVRLSKRETALMEYLIRGAGQILPREIILTYIWGV-DAEV 186 Query: 186 EENVVESHISKLRKKLRN 203 E+ ++++I LR++LR+ Sbjct: 187 EDGNLDNYIYFLRRRLRS 204 >gi|224827129|ref|ZP_03700225.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] gi|224600638|gb|EEG06825.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] Length = 228 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 1/149 (0%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L++ R +RA S VP++ ++ L + G DD + KP RE++ARV Sbjct: 59 LMLPGRDGLDICRELRAFSDVPIVMVTARVEEIDRLLGLELGADDYICKPYSPREVVARV 118 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 AI RR + + + +G QG L E R+L L + G+ ++ Q Sbjct: 119 KAILRRSQRHGALPADAGLTIDEEGYQASWQGRRLELTPAEFRLLRTLASAPGRVFSRDQ 178 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + +Y V + V+SHI LR+KL Sbjct: 179 LLDHLYA-DHRVVTDRTVDSHIKNLRRKL 206 >gi|154483735|ref|ZP_02026183.1| hypothetical protein EUBVEN_01439 [Eubacterium ventriosum ATCC 27560] gi|149735226|gb|EDM51112.1| hypothetical protein EUBVEN_01439 [Eubacterium ventriosum ATCC 27560] Length = 225 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 12/173 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G L + + IR H P++ ++ + F +G DD + KP E+ AR+AA Sbjct: 58 GMDGLTVCQQIREHIACPILFLTARIESSDKIIGFQAGADDYIVKPFDLDELGARIAAHL 117 Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR R +R F + R + + PL +RE I+E L N G+ + Sbjct: 118 RR---EQRRQNNSAVRFFGELILDYSARTVTINNQNIPLSKREFEIVELLSLNAGQVFDR 174 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +I+ ++GL + + ++E HI K+R K + +++ GY WN Sbjct: 175 ERIYELVWGLDGDGNSDTIME-HIRKIRAKFAAHTLHNYIETVWGCGYR--WN 224 >gi|78485313|ref|YP_391238.1| two component transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363599|gb|ABB41564.1| two component transcriptional regulator, winged helix family [Thiomicrospira crunogena XCL-2] Length = 226 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 4/169 (2%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 W+Q+ D+ ++ L GK L++ + +R SQVP+I ++ + + G D Sbjct: 42 WVQNHPV-DLILLDIMLPGKDG--LQVCKEVRTISQVPIIMLTAKVEEIDRILGLELGAD 98 Query: 97 DVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156 D + KP RE++ARV A+ RR + T + + QG+ L E I Sbjct: 99 DYICKPFSPRELVARVKALLRRSSLRQENHSTEDWHMDEERYQVRYQGKTVNLSMVEFAI 158 Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 L+ L + G+ +++ + +IY + V + V+SHI KLR KL +L Sbjct: 159 LKLLSTSPGRIYSRSHLIGSIYP-DNRVVSDRTVDSHIKKLRHKLAEEL 206 >gi|319936036|ref|ZP_08010459.1| hypothetical protein HMPREF9488_01290 [Coprobacillus sp. 29_1] gi|319808986|gb|EFW05493.1| hypothetical protein HMPREF9488_01290 [Coprobacillus sp. 29_1] Length = 220 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 106/221 (47%), Gaps = 9/221 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 M ++++D +++ L G ++ ++ E L + DV I+ L G G Sbjct: 1 MILIVEDDIAIQETLKELLCMKGYQVQQAYHMK-EALLLDKSHIDVMIIDIQLPDGNG-- 57 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + L + +R SQ+P++ ++ QT ++ ++G DD + KP E+LAR+ I RR+ Sbjct: 58 -ITLCQQMRQQSQIPILFLTAKDDEQTIVEALNAGGDDYITKPFRANELLARLNCIMRRI 116 Query: 120 KVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +++ +T + + D R V + L IL ++ N+G + + ++ I Sbjct: 117 EHNHDIIQTNDLSI--DIRKYRVMKNNQEIVLSAIGYEILFLIVQNQGMVITRERMIEFI 174 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E+N V H+ +LR+KL + +++ R +GY Sbjct: 175 EEKTGNYIEDNTVSVHMKRLREKLGQYQQQEYIETVRGIGY 215 >gi|320333134|ref|YP_004169845.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754423|gb|ADV66180.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 222 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 99/212 (46%), Gaps = 15/212 (7%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLELPRIIR 68 L + GY L DG++ G +SARE+ + +G + E+ R +R Sbjct: 22 LEQSGYRVLSAPDGIT--GL----------TSARENNPDLVILDLGLPDFDGAEIARRLR 69 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 S VP+I ++ ++ ++ ++G DD + KP H E++ARV + R + + Sbjct: 70 KTSAVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARV-KVQLRHQQHGEVIQI 128 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + R G L +E +L +L G+ ++ +I ++ + N Sbjct: 129 GALEIHPQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWN-GELPSNSN 187 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 VV+ H++ +R KLR+ G+ + + R +GY++ Sbjct: 188 VVDVHMANMRAKLRDLDGYGIIRTVRGIGYAL 219 >gi|290959131|ref|YP_003490313.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260648657|emb|CBG71770.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 249 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/207 (24%), Positives = 98/207 (47%), Gaps = 20/207 (9%) Query: 31 SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78 +L +E W SA + A++ ++ + + L R+ R VP++ + Sbjct: 41 ALRYEGWQIRSAGDGTGALQTARDFRPDAVVLDMMLPDMDGLTVLGRLRRELPDVPVLFL 100 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134 + +++ + +G DD V KP E++AR+ + RR ++ R+++ G + + Sbjct: 101 TAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAADRRSDSVLVVGDLMLD 160 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D + G L E +L +LM N + ++K QI ++ +D + NVVE +I Sbjct: 161 EDSHEVSRAGANIHLTATEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 219 Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220 S LR+K+ G +P + ++R GY I Sbjct: 220 SYLRRKI--DAGREPMIHTRRGAGYLI 244 >gi|238061758|ref|ZP_04606467.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|237883569|gb|EEP72397.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] Length = 231 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 7/135 (5%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAET-GPIRVFSDGRDPEVQGEV 146 + G DD V KP RE++ARV A+ RR + R T GP+ + R V GE Sbjct: 99 LELGADDYVTKPFSPRELVARVRAVLRRTVGVPEGVERVRTVGPVTLDPTRRTVTVSGEP 158 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L E +L +LMA G+ + ++ +A++G + V+ H++++R KL G Sbjct: 159 IQLTYTEFDLLAHLMARPGRVFTRGELLAAVWG-YAAHSSTRTVDVHVAQVRAKLGGAAG 217 Query: 207 FDPVDSKRFLGYSID 221 + + R +GY+ D Sbjct: 218 V--IRTHRGVGYAAD 230 >gi|284032333|ref|YP_003382264.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811626|gb|ADB33465.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 237 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 95/214 (44%), Gaps = 24/214 (11%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68 L K GY A DGV E W Q + V ++ L G G +VL R+ Sbjct: 22 LTKAGYDARVVPDGVK-------AVEVWQQW--KPSVVVLDVMLPGLSGLEVLR--RLRS 70 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVS 122 A +I +S + L + G DD V KP RE++ RV A+ RR L ++ Sbjct: 71 ADDGAAVIMLSARGEEEDRLVGLEVGADDYVVKPFSPRELVLRVQALLRREERLAGLDLT 130 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + GP+ + + R + G L RE +L +L+A+ GK K ++ ++G +D Sbjct: 131 PTKLHAGPVVIDTAARTATLDGAELSLTHREFDLLAFLVAHAGKAYTKVELLRRVWG-WD 189 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + + V H+ +LR+K+ DP D K L Sbjct: 190 FG-DSSTVIVHVRRLREKIEA----DPSDPKLVL 218 >gi|254479525|ref|ZP_05092845.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034545|gb|EEB75299.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 223 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 3/144 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + IR S+VP++ I+ L F+ G DD V KP RE++ARV AI R S Sbjct: 64 LLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRTYGS 123 Query: 123 NNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +T + D R+ V G+ L +E +L+ L+ N+GK V++ + + ++G Sbjct: 124 QEDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCLNEVWG- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNK 204 +D + V++HI +LR+KL K Sbjct: 183 YDFYGDLRTVDTHIKQLREKLGEK 206 >gi|171780129|ref|ZP_02921033.1| hypothetical protein STRINF_01917 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281477|gb|EDT46912.1| hypothetical protein STRINF_01917 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 230 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 10/204 (4%) Query: 6 DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65 DD ++D + D G+ +E F + ++ L E+ + ++ G + + Sbjct: 8 DDEKNIRDLIASFLRDQGLEVEVFET--GDQLLLRFMEEEADVVVLDVMMPGTSGINIAA 65 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-- 123 ++R S+VP+I ++ S + F +GVDD KP ++ RV AI R V+ Sbjct: 66 MLRKRSEVPIILLTARDSDDDFVKGFSAGVDDYFTKPFSPLKLSLRVRAILARQPVAKEA 125 Query: 124 NRAETGPIRV----FSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E P+ SD R QG+ L E +L+ L+++ + +++ + S ++ Sbjct: 126 TNEEAKPLAYEGLELSDKDRSATYQGKHIKLTNTEFELLKVLLSHSEEAISRDDLLSQVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLR 202 G ++ VE V + I +LRKKLR Sbjct: 186 G-YESDVETRVTDDTIKRLRKKLR 208 >gi|158425656|ref|YP_001526948.1| phosphate regulon transcriptional regulatory protein [Azorhizobium caulinodans ORS 571] gi|158332545|dbj|BAF90030.1| phosphate regulon transcriptional regulatory protein [Azorhizobium caulinodans ORS 571] Length = 233 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + +G DD V KP E+LARV A+ R Sbjct: 62 IELCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALLR 121 Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R K + G I + + G L E R+LE+LM + G+ ++ Q+ Sbjct: 122 RAKPEHVATLLRAGDIELDRETHRVHRSGREVHLGPTEFRLLEFLMQSPGRVFSREQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ H+ +LRK + DP+ + R GYS + Sbjct: 182 GVWGQ-DVYIDERTVDVHVGRLRKAINRGRQPDPIRTVRGAGYSFN 226 >gi|157693669|ref|YP_001488131.1| response regulator [Bacillus pumilus SAFR-032] gi|157682427|gb|ABV63571.1| response regulator [Bacillus pumilus SAFR-032] Length = 231 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 7/150 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E + +RA S VP++ ++ S + +G DD + KP E+ ARV A RR Sbjct: 61 IETCQQMRASSNVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQLRRYT 120 Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 V + E G +RV + + + + L E R+L+ LM+ R K + I Sbjct: 121 VYQEKKEQEETFLVGGKLRVSEEFNEVWKENQQIKLSDLEYRMLKLLMSRRNKIFSAQNI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + +++G N V HI KLR K+ + Sbjct: 181 YESVWGQPYFYCSNNTVMVHIRKLRAKIED 210 >gi|148556479|ref|YP_001264061.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148501669|gb|ABQ69923.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 232 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 3/153 (1%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAET 128 + VP+I ++ + + ++G DD V KP RE++ARV A+ RR++ ++ R Sbjct: 76 ANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRVRPALAGERLSY 135 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 I + + G L E R+L++ + + G+ ++ ++ +++G D +E Sbjct: 136 ADIEMDTASHRVRRGGSPISLGPTEFRLLKHFLEHPGRVFSRERLLDSVWG-RDSDIEPR 194 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V+ HI +LRK + D + + R GY++D Sbjct: 195 TVDVHIRRLRKAINLADAPDLIRTVRSAGYALD 227 >gi|146311154|ref|YP_001176228.1| two component transcriptional regulator [Enterobacter sp. 638] gi|145318030|gb|ABP60177.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 263 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 80/167 (47%), Gaps = 13/167 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP+I ++ L G DD V KP + E++ARV A+ RR + + A Sbjct: 99 IRKESNVPVIMVTALDQDVDKLMGLRLGADDYVIKPFNPSEVIARVEAVLRRTRPNAEVA 158 Query: 127 ETGPIRVFSDGRDPE-------VQG-EVFP-LPRRERRILEYLMANRGKRVAKTQIFSAI 177 + P+R PE V G EV P L E ++L +L N K ++ ++ A Sbjct: 159 NSRPLRTSFLTIYPEDFYVEITVAGEEVTPVLTTTEFKLLTHLARNPRKVCSREELLDAC 218 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSIDWN 223 D + V+SH+SKLRKKL N G V +S R LGY + N Sbjct: 219 LPEGDSL--DRTVDSHMSKLRKKLENA-GLKGVPESIRGLGYRLGEN 262 >gi|322392284|ref|ZP_08065745.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321144819|gb|EFX40219.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 225 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP + +LA+V + RR Sbjct: 67 IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + + D V+G+ L + E +IL L + G VA+ + ++ D Sbjct: 127 SLLEYAGVILNTKSMDLHVEGQAITLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL R +GF +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEERGLVGF--IETKKGIGYGL 222 >gi|301310542|ref|ZP_07216481.1| response regulator DrrA [Bacteroides sp. 20_3] gi|300832116|gb|EFK62747.1| response regulator DrrA [Bacteroides sp. 20_3] Length = 228 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 11/149 (7%) Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++ RI+R + P+I ++ + L F+ G DD ++KP R+++ARV A+ RR Sbjct: 63 KMARILRQDEKTANTPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVIARVKAVLRR 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E + + D + V G PL ++E IL+ L+ N+G ++ +I Sbjct: 123 TSEKSKDKEIEKLEYETLALDTKRIKATVDGVEVPLTKKEFEILKLLLENKGNVFSREEI 182 Query: 174 FSAIYGLFDEA-VEENVVESHISKLRKKL 201 S I+ DE V + ++ +I++LRKK+ Sbjct: 183 LSRIWK--DEVYVLDRTIDVNITRLRKKI 209 >gi|296178443|dbj|BAJ07866.1| putative repressor-response regulator [Streptomyces sp. 2238-SVT4] Length = 240 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 6/143 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA PLI ++ S + +G DD + KP RE++AR+ A+ RR+ Sbjct: 82 EVCRSIRAVCDTPLIVVTGRESELDRVLGLQAGADDYLVKPYGFRELMARIEAVMRRITP 141 Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N A+ G +R+ R + G+ L +E ++L L + G + + QI I+ Sbjct: 142 RNTSADVVAHGRLRIDITSRQVTLDGKDVQLTPKEFQLLHLLASQPGSVIPRQQIMVRIW 201 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G + +++H+S LR KL Sbjct: 202 G---GSWSVRTLDTHVSSLRSKL 221 >gi|294789087|ref|ZP_06754326.1| QseB [Simonsiella muelleri ATCC 29453] gi|294482828|gb|EFG30516.1| QseB [Simonsiella muelleri ATCC 29453] Length = 221 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 108/234 (46%), Gaps = 35/234 (14%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQS---------SAREDVSAIEA 51 ++I+D L+ DG G + L F +W Q+ SA D ++ Sbjct: 3 ILIIEDDPLIGDGL----------YHGLSKLSFTADWFQNGKLGADALNSASYDAVVLDL 52 Query: 52 FLI-GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA 110 L G +L+ R + + +P++ ++ +L L +SG DD + KP E+ A Sbjct: 53 GLPDCDGMVILQTWR--QTNHDIPVLILTARDALPDRLAGLNSGADDYLCKPFALDEVAA 110 Query: 111 RVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 R+ A+ RR S RA G + + + + ++G+ PL R E +LE L+ Sbjct: 111 RLVALIRR---SKGRAAADIRCGALTLDTAAKTATLRGQSLPLTRHEYMLLEMLLLQPNF 167 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ QI +YG +++ +E N +E H+ LRK K+G D + + R LGY I Sbjct: 168 IHSRAQIEDKLYG-WEQEIESNAIEVHVYNLRK----KIGKDFIRNHRNLGYQI 216 >gi|256392721|ref|YP_003114285.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256358947|gb|ACU72444.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 268 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 78/145 (53%), Gaps = 6/145 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IRA S V +I +S+ + +G DD + KP RE++AR+ A+ RR++ Sbjct: 105 LEICRGIRAVSDVAIITVSERAEEIDCVLGLQAGSDDYLVKPYGFRELMARIDAVMRRIR 164 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V + G + + + R+ + G+V + R+E +L L + G +++ QI S I Sbjct: 165 PGAVRDRVIAHGRLLIDAGCREVRIGGQVVGVTRKEFDLLLLLASQPGTVISRQQIMSQI 224 Query: 178 Y-GLFDEAVEENVVESHISKLRKKL 201 + ++ E+ +++H+S LR KL Sbjct: 225 WQDVWSEST--RTIDTHVSSLRSKL 247 >gi|163940441|ref|YP_001645325.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229011915|ref|ZP_04169095.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides DSM 2048] gi|229133482|ref|ZP_04262309.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus BDRD-ST196] gi|163862638|gb|ABY43697.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228649882|gb|EEL05890.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus BDRD-ST196] gi|228749329|gb|EEL99174.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides DSM 2048] Length = 224 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 9/187 (4%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L+++ ++ I L+ G LE+ R +RA P+I ++ S+ + DSG DD Sbjct: 38 LEAALEKNYDLILLDLMLPGLNGLEVCRRLRATKSTPIIMLTARDSIMDRVTGLDSGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPR 151 + KP E+LAR+ I+RR N + F D R E L Sbjct: 98 YLPKPFAIEELLARMRVIFRR--EENTEQKHASFLSFKDLQLQIESRTITKGNEEIELTN 155 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 +E +L M N + + + + ++G +D VE N+V+ ++ LR KL + + + Sbjct: 156 KEFELLLMFMKNINRVLTRDILLDQVWG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQ 214 Query: 212 SKRFLGY 218 + R GY Sbjct: 215 TVRGAGY 221 >gi|148545543|ref|YP_001265645.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148509601|gb|ABQ76461.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 239 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 100/210 (47%), Gaps = 12/210 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ D G S+ + + ++ AR V + L+ GE L Sbjct: 5 LLVVDDDDEIRELLCDYLTDAGYSV--LAAADGQQMRDQLARHKVELVVLDLMLPGEDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R ++A + +I +S S + + G DD + KP RE++AR+ A+ RR + Sbjct: 63 SLCRQLQATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVLRRPQR 122 Query: 122 SNNRAETGPI--RVFSDGRDPEVQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQ 172 AE + ++F+ R V+ GE LPR + R+L L+ + V++ Q Sbjct: 123 LGTSAEEPMVDAQLFAGFRLEHVKRLLTRPDGETLTLPRSDYRVLRELLEANNRVVSRDQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + + +G D ++ V+ +S+LR++LR Sbjct: 183 LTRSAFG-RDHLPDDRSVDMCVSRLRQQLR 211 >gi|127513623|ref|YP_001094820.1| two component transcriptional regulator [Shewanella loihica PV-4] gi|126638918|gb|ABO24561.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 226 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 2/148 (1%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132 P++ ++ + Q ++ D+G DD + KP H E++AR+ A+ RR S+ + GP Sbjct: 74 PILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRAAGKSSPVIQNGPYS 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + + + + + L E ++ EY M + G+ +K+ + IY D ++ NV+E Sbjct: 134 LNTSSHEIKFGDQDVSLSGSEYKLFEYFMLHIGEVKSKSILIEHIYDQ-DFDLDSNVIEV 192 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I +LRKKL + +++ R GY + Sbjct: 193 FIRRLRKKLDPNGQYGLIETLRGQGYRL 220 >gi|306833967|ref|ZP_07467091.1| response regulator [Streptococcus bovis ATCC 700338] gi|304423968|gb|EFM27110.1| response regulator [Streptococcus bovis ATCC 700338] Length = 236 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + +R S +P+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 61 LEVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120 Query: 121 ------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 SN+ G +++ D + +GE L RE +L +L + G+ + Sbjct: 121 NIETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVM 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ I +LR+K+ + Sbjct: 181 TREYLLETVWG-YDYFGDVRTVDVTIRRLREKIED 214 >gi|258654528|ref|YP_003203684.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557753|gb|ACV80695.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 230 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 11/169 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +V++ R S V + D P+ + + +G DD V KP E+ ARVAA+ Sbjct: 63 GLEVMKRVRAAGVDSGVVFLSARDTPADK--IAGLTAGGDDYVTKPFGLEELAARVAAVL 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR+K + A+ G +RV DPE G L E ++L +LM N +++ Sbjct: 121 RRVK--PDPADDGTLRVADLELDPETYQVTRAGVPIELAPTEYKLLRHLMVNANVVLSRQ 178 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Q+ A++G D +++VV ++IS LR+K+ + G + + R GY + Sbjct: 179 QLLDAVWGT-DFYGDDSVVATYISYLRRKV-DATGEPLIHTHRGFGYVL 225 >gi|256379472|ref|YP_003103132.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255923775|gb|ACU39286.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 223 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 107/230 (46%), Gaps = 18/230 (7%) Query: 1 MFVLI--DDRALVKDGYIALFGDDGVSLEGF-----NSLEFEEWLQSSAREDVSAIEAFL 53 M VL+ DDR LV G +A G+ EGF + E W S DV ++ L Sbjct: 1 MRVLLVDDDRRLV--GLLA----RGLVAEGFAVDVEHDGEAGLWRASEHAYDVVVLDIML 54 Query: 54 IG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 G G +V R+ A + P++ ++ + D+G DD + KP + ++AR+ Sbjct: 55 PGLNGYRVC--ARLRDAGVETPILMLTAKDGELDEAEGLDTGADDYLTKPFSYVVLVARL 112 Query: 113 AAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A+ RR A G + V R +G L +E +LE+L +G+ V K Sbjct: 113 RALARRGAAGRPAAVVAGDLVVDPATRACSRRGTPISLTAKEFAVLEHLARRKGRVVTKD 172 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + ++ EA + N+VE ++S LR+K+ G + + R +GY ++ Sbjct: 173 EVLAGVWDSAREA-DHNLVEVYVSALRRKIDLPFGTFTITTVRGVGYRLE 221 >gi|197105292|ref|YP_002130669.1| response regulator [Phenylobacterium zucineum HLK1] gi|196478712|gb|ACG78240.1| response regulator [Phenylobacterium zucineum HLK1] Length = 251 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 79/168 (47%), Gaps = 12/168 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +RA +P++ +S + + G DD V KP RE+ ARV AI RR++ Sbjct: 80 LEVCRRLRAQGDLPILFLSSRDDEIDRVLGIELGGDDYVVKPFSPREVTARVQAILRRVR 139 Query: 121 VSNNRAETGPIRVFSDGR---DPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQ 172 RAE V GR DPE + PL E +IL LM + ++ Sbjct: 140 ---GRAEPRGPGVLRHGRLSLDPEAWTARWDEVEAPLTVTEFQILRVLMGAPARVFSRDA 196 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++G A+ + ++SHI LR K G D V+++ +GY + Sbjct: 197 IIDRLHGP-GFAITDRTIDSHIRNLRAKFARAGGHDVVETRAGVGYRL 243 >gi|58337790|ref|YP_194375.1| two-component system regulator [Lactobacillus acidophilus NCFM] gi|227904440|ref|ZP_04022245.1| two-component system regulator [Lactobacillus acidophilus ATCC 4796] gi|58255107|gb|AAV43344.1| two-component system regulator [Lactobacillus acidophilus NCFM] gi|227867815|gb|EEJ75236.1| two-component system regulator [Lactobacillus acidophilus ATCC 4796] Length = 238 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 77/152 (50%), Gaps = 12/152 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R P+I ++ S+ + D G DD + KP E+LAR+ A+ RR+K Sbjct: 61 LEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVK 120 Query: 121 VSNNRAE-TGPIRVFSDGRDPEVQ----------GEVFPLPRRERRILEYLMANRGKRVA 169 + + ++ T + +D ++ G+ L +RE +L L+ N+ V+ Sbjct: 121 IEKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVS 180 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ + I+G + +E NVVE ++ LR K+ Sbjct: 181 RDQLLNKIWG-PESNIETNVVEVYVRYLRNKI 211 >gi|317126455|ref|YP_004100567.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590543|gb|ADU49840.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 248 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 9/166 (5%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R + VP++ ++ +++ + +G DD V KP E++ARV A+ RR Sbjct: 82 LEVLRRMRTDNPNVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARVRALMRRT 141 Query: 120 KV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + S++ G + + D + GE L E +L YLM N + ++K QI Sbjct: 142 TMSVSSSDSVLVVGDLTLDEDSHEVYRAGEEIHLTATEFELLRYLMRNPRRVLSKAQILD 201 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 ++ +D + NVVE +IS LRKK+ G DP + + R GY + Sbjct: 202 RVWN-YDFGGQANVVELYISYLRKKV--DAGRDPMIHTMRGAGYVL 244 >gi|296332737|ref|ZP_06875197.1| two-component response regulator (YclK) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673082|ref|YP_003864754.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150017|gb|EFG90906.1| two-component response regulator (YclK) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411326|gb|ADM36445.1| two-component response regulator (YclK) [Bacillus subtilis subsp. spizizenii str. W23] Length = 227 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 19/200 (9%) Query: 12 KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71 K+G+ A F DG LEG+ E W D+ ++ L + + R IR S Sbjct: 22 KEGFEAEFVHDG--LEGYQRFTEENW-------DLIILDIML--PSMDGVTICRKIRETS 70 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNR 125 VP+I ++ + + F+ G DD V KP ++AR+ A+ RR + + + Sbjct: 71 TVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYQATGKAVIDEDM 130 Query: 126 AETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E+ + R+ + GE V L +E +L YL+ N + ++ Q+ ++G + Sbjct: 131 IESECFTINKKTREVFLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLLEQVWG-YQFY 189 Query: 185 VEENVVESHISKLRKKLRNK 204 +E V+ HI +LRKKL ++ Sbjct: 190 GDERTVDVHIKRLRKKLASE 209 >gi|298503375|ref|YP_003725315.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|298238970|gb|ADI70101.1| response regulator [Streptococcus pneumoniae TCH8431/19A] Length = 238 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP + +LA+V + RR Sbjct: 80 IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 139 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + + D QG+V L + E +IL L + G VA+ + ++ D Sbjct: 140 SLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 198 Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +GF +++K+ +GY + Sbjct: 199 FIDDNTLSVNVARLRKKLEEQGLVGF--IETKKGIGYGL 235 >gi|284037506|ref|YP_003387436.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283816799|gb|ADB38637.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 224 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 17/165 (10%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+PR S + L + P ++ F +G DD + KP RE++ R+ A+ RR Sbjct: 69 EMPR----QSVMLLTALDSLPDKESG---FGAGADDYLVKPFEFRELMLRIKALARR--N 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S+ +RV D E G+ L RE +LEYLM N+G+ V++ I Sbjct: 120 SDFSGLKTVLRVADLELDTEAHSVYRAGQRIDLTAREYALLEYLMVNQGRTVSRVDIAEK 179 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ L FD + NV+E +I+ LRKK+ V + +GY + Sbjct: 180 VWDLHFDTST--NVIEVYINYLRKKIDKDYSQKLVHTIIGMGYVL 222 >gi|261404059|ref|YP_003240300.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280522|gb|ACX62493.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 226 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 85/161 (52%), Gaps = 2/161 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R IR ++ +P++ ++ + + F+ G DD + KP E++ RV A+ +R +V Sbjct: 63 ELCREIRRNTGIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKRYQV 122 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ T G +++ + + EVF LP +E +L L + G + + ++ I+G Sbjct: 123 AASQTVTIGNLQMNRKTYEAKAGDEVFTLPLKEFELLFKLASYPGSTLTRDRLIEDIWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D E ++ H+++LR++ + + + R LGY ++ Sbjct: 182 YDFEGNERTLDVHVNRLRERFPEEKYRFRIRTVRGLGYRLE 222 >gi|146284354|ref|YP_001174507.1| transcriptional regulatory protein TctD [Pseudomonas stutzeri A1501] gi|145572559|gb|ABP81665.1| transcriptional regulatory protein TctD [Pseudomonas stutzeri A1501] Length = 271 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 8/152 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P++ ++ + + + G DD + KP E+ ARV A+ RR R + + Sbjct: 121 LPVLMLTARGEVSDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVGGGERQQRCGVL 180 Query: 133 VFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V+ D R + E L RE+ +LE L+A G+ ++K Q+ + ++GL DE + +E Sbjct: 181 VYDLDARRFSLADEPLTLTSREQSVLEALIARPGRVMSKDQLAAQVFGL-DEDASADAIE 239 Query: 192 SHISKLRKKLRNKLGFDPVD--SKRFLGYSID 221 ++ +LRKKL + PV + R LGY ++ Sbjct: 240 IYVYRLRKKLEGQ----PVRIVTFRGLGYMLE 267 >gi|15608043|ref|NP_215418.1| two component response transcriptional regulatory protein PRRA [Mycobacterium tuberculosis H37Rv] gi|15840322|ref|NP_335359.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|31792091|ref|NP_854584.1| two component response transcriptional regulatory protein PRRA [Mycobacterium bovis AF2122/97] gi|121636826|ref|YP_977049.1| two component response transcriptional regulatory protein prrA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660681|ref|YP_001282204.1| two component response transcriptional regulatory protein PrrA [Mycobacterium tuberculosis H37Ra] gi|148822112|ref|YP_001286866.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis F11] gi|215402702|ref|ZP_03414883.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis 02_1987] gi|215410489|ref|ZP_03419297.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis 94_M4241A] gi|215426171|ref|ZP_03424090.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis T92] gi|215429761|ref|ZP_03427680.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis EAS054] gi|215445046|ref|ZP_03431798.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis T85] gi|218752567|ref|ZP_03531363.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis GM 1503] gi|224989297|ref|YP_002643984.1| two component response transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253800073|ref|YP_003033074.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis KZN 1435] gi|254231209|ref|ZP_04924536.1| two component response transcriptional regulatory protein prrA [Mycobacterium tuberculosis C] gi|254363833|ref|ZP_04979879.1| two component response transcriptional regulatory protein prrA [Mycobacterium tuberculosis str. Haarlem] gi|254549881|ref|ZP_05140328.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185800|ref|ZP_05763274.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis CPHL_A] gi|260199923|ref|ZP_05767414.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis T46] gi|260204107|ref|ZP_05771598.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis K85] gi|289442314|ref|ZP_06432058.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis T46] gi|289446470|ref|ZP_06436214.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis CPHL_A] gi|289555315|ref|ZP_06444525.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis KZN 605] gi|289573530|ref|ZP_06453757.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis K85] gi|289744634|ref|ZP_06504012.1| two component response transcriptional regulatory protein prra [Mycobacterium tuberculosis 02_1987] gi|289749425|ref|ZP_06508803.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis T92] gi|289752958|ref|ZP_06512336.1| two component response transcriptional regulatory protein prra [Mycobacterium tuberculosis EAS054] gi|289756989|ref|ZP_06516367.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis T85] gi|289761037|ref|ZP_06520415.1| two component response transcriptional regulatory protein prrA [Mycobacterium tuberculosis GM 1503] gi|294996384|ref|ZP_06802075.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis 210] gi|297633422|ref|ZP_06951202.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis KZN 4207] gi|297730407|ref|ZP_06959525.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis KZN R506] gi|298524395|ref|ZP_07011804.1| two component response transcriptional regulatory protein prra [Mycobacterium tuberculosis 94_M4241A] gi|306775029|ref|ZP_07413366.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu001] gi|306782056|ref|ZP_07420393.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu002] gi|306783577|ref|ZP_07421899.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu003] gi|306787941|ref|ZP_07426263.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu004] gi|306792278|ref|ZP_07430580.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu005] gi|306796677|ref|ZP_07434979.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu006] gi|306802565|ref|ZP_07439233.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu008] gi|306806745|ref|ZP_07443413.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu007] gi|306966942|ref|ZP_07479603.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu009] gi|306971137|ref|ZP_07483798.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu010] gi|307078865|ref|ZP_07488035.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu011] gi|307083424|ref|ZP_07492537.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu012] gi|313657734|ref|ZP_07814614.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis KZN V2475] gi|1314043|emb|CAA97378.1| TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN PRRA [Mycobacterium tuberculosis H37Rv] gi|13880485|gb|AAK45173.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|31617679|emb|CAD93788.1| TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN PRRA [Mycobacterium bovis AF2122/97] gi|121492473|emb|CAL70941.1| Two component response transcriptional regulatory protein prrA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600268|gb|EAY59278.1| two component response transcriptional regulatory protein prrA [Mycobacterium tuberculosis C] gi|134149347|gb|EBA41392.1| two component response transcriptional regulatory protein prrA [Mycobacterium tuberculosis str. Haarlem] gi|148504833|gb|ABQ72642.1| two component response transcriptional regulatory protein PrrA [Mycobacterium tuberculosis H37Ra] gi|148720639|gb|ABR05264.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis F11] gi|224772410|dbj|BAH25216.1| two component response transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253321576|gb|ACT26179.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis KZN 1435] gi|289415233|gb|EFD12473.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis T46] gi|289419428|gb|EFD16629.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis CPHL_A] gi|289439947|gb|EFD22440.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis KZN 605] gi|289537961|gb|EFD42539.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis K85] gi|289685162|gb|EFD52650.1| two component response transcriptional regulatory protein prra [Mycobacterium tuberculosis 02_1987] gi|289690012|gb|EFD57441.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis T92] gi|289693545|gb|EFD60974.1| two component response transcriptional regulatory protein prra [Mycobacterium tuberculosis EAS054] gi|289708543|gb|EFD72559.1| two component response transcriptional regulatory protein prrA [Mycobacterium tuberculosis GM 1503] gi|289712553|gb|EFD76565.1| two component system response transcriptional regulatory protein prrA [Mycobacterium tuberculosis T85] gi|298494189|gb|EFI29483.1| two component response transcriptional regulatory protein prra [Mycobacterium tuberculosis 94_M4241A] gi|308216381|gb|EFO75780.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu001] gi|308325287|gb|EFP14138.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu002] gi|308331580|gb|EFP20431.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu003] gi|308335393|gb|EFP24244.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu004] gi|308339198|gb|EFP28049.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu005] gi|308342935|gb|EFP31786.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu006] gi|308346761|gb|EFP35612.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu007] gi|308350676|gb|EFP39527.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu008] gi|308355337|gb|EFP44188.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu009] gi|308359275|gb|EFP48126.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu010] gi|308363185|gb|EFP52036.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu011] gi|308366841|gb|EFP55692.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis SUMu012] gi|323720612|gb|EGB29690.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis CDC1551A] gi|326904877|gb|EGE51810.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis W-148] gi|328459812|gb|AEB05235.1| two component system transcriptional regulator prrA [Mycobacterium tuberculosis KZN 4207] Length = 236 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 5/152 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET- 128 + VP+ +S S+ + ++G DD + KP E++ARV A+ RR + + +ET Sbjct: 81 NDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETI 140 Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 GP+ V GR V G L +RE +L L ++ +++ Q+ ++G +D A + Sbjct: 141 TVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAAD 199 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 NVV+ I LR+KL G + + R +G+ Sbjct: 200 TNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGF 231 >gi|313897315|ref|ZP_07830858.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium sp. HGF2] gi|312957685|gb|EFR39310.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium sp. HGF2] Length = 226 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 2/112 (1%) Query: 91 FDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F+ GVDD + KP RE+LARV A + R+ + R G + + R+ + + L Sbjct: 92 FEQGVDDYITKPFSPRELLARVNAHLKRQNRKQEKRLSVGDLSMDMKRREAYIGERMMTL 151 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++E +LEY + N+ +++ I + I+G FD + +V+ H+ KLR KL Sbjct: 152 TKKEFDLLEYFIQNKDIVLSRDSILNDIWG-FDYDGDTRIVDVHVFKLRNKL 202 >gi|299769361|ref|YP_003731387.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1] gi|298699449|gb|ADI90014.1| Transcriptional regulatory protein qseB [Acinetobacter sp. DR1] Length = 220 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 8/165 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GEKVL R VP+I I+ S+ ++ D G +D + KP E+ AR+ A Sbjct: 59 GEKVLTTIRY--KQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQL 116 Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+ +S T G +++ + + G+ L +E +IL LM + + + Q+ Sbjct: 117 RKQTLSQQSILTWGDLQLDTQAKVVLSAGKSIDLTAKEFQILRKLMVHPEHIITRDQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A+Y + E +E N +E I +LRK K+G + + R LGY + Sbjct: 177 ALYA-WGEEIESNAIEVFIYQLRK----KIGSSCIKTIRGLGYRM 216 >gi|262043157|ref|ZP_06016295.1| DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039545|gb|EEW40678.1| DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 240 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%) Query: 58 EKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 E L L R R+H +P++ ++ Q ++ +G DD V KP H E+ AR+ A+ Sbjct: 74 EDGLSLIRRWRSHDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALL 133 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR +++ P +V R+ V + L E I+E L+ NRGK V+K + Sbjct: 134 RRNSGLASQVISLPPFQVDLSRRELSVNDQPIKLTAFEYTIMETLIRNRGKVVSKDSLML 193 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y E E + ++ + +LRKK++ + D + + R GY Sbjct: 194 QLYP-DAELRESHTIDVLMGRLRKKIQAEYPQDVITTVRGQGY 235 >gi|47231509|gb|AAT12781.1| PhoB [Alcaligenes faecalis] Length = 236 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 75/150 (50%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETG 129 +P+I ++ S Q +D ++G DD + KP +E++AR+ A+ RR +++++ G Sbjct: 76 HIPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELIARIKAVLRRRAPQLTDDVISIG 135 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEEN 188 +++ QG + E R+L + M + + ++Q+ ++G D VEE Sbjct: 136 NLQLDPSTHRLSSQGMALTIGPTEFRLLHFFMTHTERVFTRSQLLDQVWG--DHVFVEER 193 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ HI +LRK L +++ R GY Sbjct: 194 TVDVHIRRLRKALEPSGHDKHIETIRGSGY 223 >gi|78780097|ref|YP_398209.1| two component transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78713596|gb|ABB50773.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. MIT 9312] Length = 248 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 13/150 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IRA S VP+I ++ ++ + D G DD ++KP +E+ AR+A I RR+ + + Sbjct: 67 RRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPTVS 126 Query: 125 RAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 AET G + V ++ R GE L E +LE L GK V + + Sbjct: 127 VAETKEVPSGKGVMKFGSLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVPRAE 186 Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201 I ++G A + VV+ ++++LR KL Sbjct: 187 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 216 >gi|317055523|ref|YP_004103990.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315447792|gb|ADU21356.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 219 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 29/222 (13%) Query: 7 DRALVKDGYIALFGDDGVS--LEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLEL 63 + AL K+GY GVS G +L L + D+ ++ L G GE++L Sbjct: 18 EEALRKEGY-------GVSRAYSGTEAL----LLVGQKKPDLILLDLMLPGLSGEELL-- 64 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 P+I +P+I +S + + +G D V KP + E++AR+A +L+++ Sbjct: 65 PKI----KGIPVIVVSAKADVADKVGLLMAGASDYVTKPFNIAELIARIAV---QLRMAQ 117 Query: 124 NRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ +T G + ++ D + GE L R E IL+ LM + V +T I I Sbjct: 118 SKGDTNALTFGDLTLYCDTLTAVIDGEEIRLTRTECAILKLLMQSPNTPVGRTTILDKI- 176 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E ++ HIS +RKKL G D +++ +G+ + Sbjct: 177 SIDTPDCTERSLKQHISNMRKKLEAVNGHDYIEAVYGIGFKM 218 >gi|254559323|ref|YP_003066418.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens DM4] gi|254266601|emb|CAX22371.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens DM4] Length = 220 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 102/225 (45%), Gaps = 17/225 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++++D ++ DG A G G ++E + + + L +S V G G V Sbjct: 3 ILVVEDDPILSDGLRAGLGLSGATVECVATCADADAALATSGFAAVVLDLMLPDGSGLDV 62 Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R +R + P++ ++ ++ + D G DD + KP E+ AR+ A+ RR Sbjct: 63 L---RGLRGRGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRR- 118 Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ RA E IR+ + G P+ RRE +L LM +K ++ Sbjct: 119 --ASGRAAACLEHAGIRLDPAELAVTLHGRPIPVSRREFMVLAALMERPSVLRSKGELEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E VE N VE H+ LR K+G +++ R LGY + Sbjct: 177 RLYG-WQEEVESNAVEVHV----HNLRAKIGKHTIETVRGLGYRM 216 >gi|229173313|ref|ZP_04300857.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus MM3] gi|228610007|gb|EEK67285.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus MM3] Length = 224 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 5/162 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +RA P+I ++ S+ + DSG DD + KP E+LAR+ I+RR + Sbjct: 61 LEVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREE 120 Query: 121 VSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N+ + +++ + R E L +E +L M N + + + + Sbjct: 121 HIENKHVSSLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G +D VE N+V+ ++ LR KL + + + + R GY Sbjct: 181 VWG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGY 221 >gi|227892817|ref|ZP_04010622.1| two-component system regulator [Lactobacillus ultunensis DSM 16047] gi|227865458|gb|EEJ72879.1| two-component system regulator [Lactobacillus ultunensis DSM 16047] Length = 238 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 77/152 (50%), Gaps = 12/152 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R P+I ++ S+ + D G DD + KP E+LAR+ A+ RR+K Sbjct: 61 LEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVK 120 Query: 121 VSNNRAE-TGPIRVFSDGRDPEVQ----------GEVFPLPRRERRILEYLMANRGKRVA 169 + + ++ T + +D ++ G+ L +RE +L L+ N+ V+ Sbjct: 121 IEKDASKVTVAKQKIVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIENKNNVVS 180 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ + I+G + +E NVVE ++ LR K+ Sbjct: 181 RDQLLNKIWG-PESNIETNVVEVYVRYLRNKI 211 >gi|187925240|ref|YP_001896882.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|187716434|gb|ACD17658.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 220 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 LDVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQ 119 Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S++ G + + + G L RE +LE L+A G ++K+Q+ +Y Sbjct: 120 SGRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + E + N VE +I LRK KLG + + + R LGY I Sbjct: 180 G-WGEEIGSNTVEVYIHALRK----KLGAELIRNVRGLGYMI 216 >gi|108801411|ref|YP_641608.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119870564|ref|YP_940516.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|108771830|gb|ABG10552.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119696653|gb|ABL93726.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] Length = 233 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 15/190 (7%) Query: 23 GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75 G+ L GF+ +++ E L+S+ + +A ++ VL+ ++ A + VP+ Sbjct: 26 GLRLSGFDVSTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPI 131 +S S+ + ++G DD + KP E++ARV A+ RR S+ + GP+ Sbjct: 83 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSSATFSSETIQVGPL 142 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V GR V G L +RE +L L ++ +++ Q+ ++G +D A + NVV+ Sbjct: 143 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 201 Query: 192 SHISKLRKKL 201 I LR+KL Sbjct: 202 VFIGYLRRKL 211 >gi|51094316|gb|AAT95326.1| response regulator [Bifidobacterium breve UCC2003] Length = 243 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 79/172 (45%), Gaps = 20/172 (11%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI + P++ ++ Q + G DD V KP E++AR+ AI RR + Sbjct: 71 RIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR---TRE 127 Query: 125 RAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E PI + D D G+ L E + + YLM N G+ ++K QI ++ Sbjct: 128 QVEDDPIIRVADLEINEDSHDVSRAGQPIDLSPTEYKFVRYLMDNEGRVLSKAQILDHVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLR---------NKLGFDP-VDSKRFLGYSI 220 +D + +VES+IS LRKK+ K P +++KR +GY I Sbjct: 188 Q-YDWGGDAAIVESYISYLRKKVDGIEVDDGEGGKRKVTPLIETKRGIGYMI 238 >gi|332187093|ref|ZP_08388833.1| response regulator [Sphingomonas sp. S17] gi|332012793|gb|EGI54858.1| response regulator [Sphingomonas sp. S17] Length = 229 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 104/227 (45%), Gaps = 26/227 (11%) Query: 16 IALFGDDGVSLE----GFNSLEFEEWLQSSAREDVSAIEA---------FLIGKGEKVLE 62 I L DD V+ E G + + S+ E ++ + A L+ +G+ + Sbjct: 3 ILLAEDDAVTAENIGAGLRAAGHHIRIASTGHEALTLLNAEPFDLAVLDRLMPQGDGMGV 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L I + +P++ ++ +++ ++ + G DD + KP E+ AR+ A+ RR V+ Sbjct: 63 LAAIRQRDRHLPVLMLTALGAIEDRVEGLEEGADDYLVKPFALPELTARINALGRRRAVA 122 Query: 123 NNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E GP + G R V + RE R+LE L+ +G+ V +T + Sbjct: 123 KE--EDGPEVILRWGGLTLDLLDRQVRWHEAVILVQPREFRLLEELLRAQGRIVTRTMLL 180 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ L FD N+VE+H+S+LR +L D + + R GY + Sbjct: 181 ESVWKLHFDP--RTNIVETHLSRLRTRLAEAGCADAIVTVRGAGYRM 225 >gi|326693245|ref|ZP_08230250.1| two-component response regulator [Leuconostoc argentinum KCTC 3773] Length = 229 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 8/148 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R + P+I ++ S+ + D G DD + KP E+LAR+ ++ RR+ Sbjct: 61 LEVARRLRETKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIA 120 Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ +R+ + R ++ L +RE +L L+ N ++ Q+ Sbjct: 121 IETESSDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G FD VE NVV+ +I LR K+ Sbjct: 181 LKEVWG-FDSEVETNVVDVYIRYLRNKI 207 >gi|326324767|dbj|BAJ84573.1| TCS response regulator CovR-like protein [Streptococcus equi subsp. zooepidemicus] Length = 228 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 8/165 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + +T V+ D R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEK-KTPSQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLS 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 182 NVWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|288561577|ref|YP_003428983.1| two component response regulator [Bacillus pseudofirmus OF4] gi|288548209|gb|ADC52091.1| two component response regulator [Bacillus pseudofirmus OF4] Length = 232 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 74/148 (50%), Gaps = 11/148 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +I+R +S +P++ +S +L+ +D + G DD + KP E++ARV A+ RR V Sbjct: 67 EVCKIVREYSTIPILMLSARKALEDRVDGLNLGADDYLTKPFEPEELIARVKALLRR--V 124 Query: 122 SNNRAETGPIRV-FSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + A+ +++ F DG R V E+ L +E +L L N + + + Sbjct: 125 TTIEAKKDEVKLAFEDGLSIYYENRSVYVNNELVELTAKEFELLYKLALNPQRVYTRDDL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 I+G D + V+SH+ +R KL Sbjct: 185 LYLIWG-EDYVGAQRTVDSHMKNIRSKL 211 >gi|253578483|ref|ZP_04855755.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850801|gb|EES78759.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 222 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 8/153 (5%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---T 128 ++P+I ++ S T+ DSG DD + KP E+++R+ A+ RR ++ AE T Sbjct: 73 KLPIIMLTAKSSEYDTVVGLDSGADDYIPKPFRMMELISRIRALLRR--TEDDGAEEYRT 130 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + V V + L +E +L L+ N G +++TQ+ + ++G ++ E Sbjct: 131 GNLYVCPSRHIATVDKKNVNLTLKEYEVLCLLLKNSGTVLSRTQLLNQVWG-YEFDGESR 189 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V+ HI LR+KL + + V++ R +GY I+ Sbjct: 190 TVDVHIRTLRQKLGS--AGELVETVRGVGYKIN 220 >gi|154503490|ref|ZP_02040550.1| hypothetical protein RUMGNA_01314 [Ruminococcus gnavus ATCC 29149] gi|153795590|gb|EDN78010.1| hypothetical protein RUMGNA_01314 [Ruminococcus gnavus ATCC 29149] Length = 224 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 13/210 (6%) Query: 17 ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPL 75 AL D + + F+ E L + R V ++ L G GE+VL+ IR P+ Sbjct: 20 ALEKADYLCTQAFSGTE-ARMLLAMNRYSVVLLDLMLPGISGEEVLQE---IRKQGNTPV 75 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS 135 I ++ ++ ++ SG DD V KP +E+LARVA RR++ S + + Sbjct: 76 IILTAKDTIDDKVEVLQSGADDYVTKPFDIKEVLARVAVQIRRMEGSFSEGNLVYQGLEL 135 Query: 136 DGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV--EENVV 190 D + V Q E+ + R+E ILE L+ + K +K +IF + +EA E + Sbjct: 136 DRENFCVRVDQTELPKITRQEFSILELLLKHPKKVFSKEEIFEYAW---EEAYMGETKTL 192 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + HIS +RKK+++ + +++ +GY + Sbjct: 193 DVHISNIRKKIKSVTSKEYIETIWGIGYRL 222 >gi|28868878|ref|NP_791497.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213969509|ref|ZP_03397645.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] gi|301385965|ref|ZP_07234383.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato Max13] gi|302058710|ref|ZP_07250251.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato K40] gi|28852117|gb|AAO55192.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213925605|gb|EEB59164.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] Length = 247 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 11/167 (6%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE + R +R P++ ++ + D+G DD V KP+H R +LAR+ Sbjct: 59 LMLPGEDGFSICRTVRDRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARI 118 Query: 113 AAIYRRLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 A+ RR + R GP+ V + R+ ++ + L E +L L+AN G+ Sbjct: 119 HALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGR 178 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +++ +IF+A+ G+ + ++ ++ IS++R K+G DP+ + Sbjct: 179 TLSREEIFTALRGVGYDG-QDRSIDVRISRIRP----KIGDDPIHPR 220 >gi|51597134|ref|YP_071325.1| DNA-binding transcriptional regulator BaeR [Yersinia pseudotuberculosis IP 32953] gi|153949110|ref|YP_001400191.1| BaeR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|170023569|ref|YP_001720074.1| DNA-binding transcriptional regulator BaeR [Yersinia pseudotuberculosis YPIII] gi|186896226|ref|YP_001873338.1| DNA-binding transcriptional regulator BaeR [Yersinia pseudotuberculosis PB1/+] gi|51590416|emb|CAH22056.1| two-component system response regulator [Yersinia pseudotuberculosis IP 32953] gi|152960605|gb|ABS48066.1| transcriptional regulatory protein BaeR [Yersinia pseudotuberculosis IP 31758] gi|169750103|gb|ACA67621.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] gi|186699252|gb|ACC89881.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] Length = 239 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 9/174 (5%) Query: 36 EWLQSSA------REDVSAIEAF-LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88 +WL + A R+ AI L+ G + L R IR S +P++ ++ L Sbjct: 39 QWLTNGAEVVATVRQTPPAIILLDLMLPGSDGITLCREIRRFSDIPIVMVTAKTEEIDRL 98 Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVF 147 + G DD + KP RE++ARV I RR ++ + P+ + QG + Sbjct: 99 LGLEIGADDYICKPYSPREVVARVKTILRRCSQQRHQPTDDAPLLINESRFQASYQGHML 158 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L E R+L+ L + G ++ Q+ + +Y + V + ++SHI LR+KL Sbjct: 159 ELTPAEFRLLKILASQPGHVFSREQLLNNLYDDY-RVVTDRTIDSHIKNLRRKL 211 >gi|328476337|gb|EGF46980.1| two-component response regulator [Lactobacillus rhamnosus MTCC 5462] Length = 226 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 4/155 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA + VP+I ++ + Q + +G DD V KP E+ AR+ A RR + +A Sbjct: 69 IRAITSVPIIFLTARITDQDKVQGLGAGGDDYVTKPFSLTELGARIKAHVRRAHQPDKQA 128 Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G I + V L ++ +++E+L N G+ ++ Q++ I+G +D Sbjct: 129 QIAVFGRIMIDYHAHQVSVDTTCLKLENKQYQLIEWLSLNPGQVFSREQLYEKIWG-YDA 187 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E V+ HI ++RK P+ + +GY Sbjct: 188 QGDERVITEHIRRIRKLFDACQVTSPIVTVWGVGY 222 >gi|258507543|ref|YP_003170294.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|257147470|emb|CAR86443.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|259648894|dbj|BAI41056.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 226 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 4/155 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA + VP+I ++ + Q + +G DD V KP E+ AR+ A RR + +A Sbjct: 69 IRAITSVPIIFLTARITDQDKVQGLGAGGDDYVTKPFSLTELGARIKAHVRRAHQPDKQA 128 Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G I + V L ++ +++E+L N G+ ++ Q++ I+G +D Sbjct: 129 QIAVFGRIMIDYHAHQVSVDTTCLKLENKQYQLIEWLSLNPGQVFSREQLYEKIWG-YDA 187 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E V+ HI ++RK P+ + +GY Sbjct: 188 QGDERVITEHIRRIRKLFDACQVTSPIVTVWGVGY 222 >gi|138895267|ref|YP_001125720.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|134266780|gb|ABO66975.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] Length = 223 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 3/151 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR S VP+I ++ + G DD + KP E+LAR+ A+ RR Sbjct: 62 ETCKRIREFSNVPIIMVTARDQTTDIVQGLKIGADDYITKPFDESELLARIEAVLRRSVG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +++ E + D Q + L +E IL + + + ++ QI +++G + Sbjct: 122 KHSKMEFQGLVWDEDEYKVHYQNKPIFLTPKEFAILGLFLKHPNRVFSREQIIVSLWG-Y 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 + EE ++SH+ +R+KLR + GF P+D Sbjct: 181 NANTEERTIDSHVKNIREKLR-QAGF-PIDQ 209 >gi|90579472|ref|ZP_01235281.1| putative transcriptional regulatory protein PhoP [Vibrio angustum S14] gi|90439046|gb|EAS64228.1| putative transcriptional regulatory protein PhoP [Vibrio angustum S14] Length = 224 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 3/153 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130 ++P++ ++ + Q + ++G DD + KP E++AR++A+ RR G Sbjct: 72 RLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSAGFVKPEMTAGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 IRV + V + L E +LEYLM + + V+K ++ +Y D+ + N + Sbjct: 132 IRVDLLAKQVYVHETLLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE--DQEGDPNTI 189 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E IS+LRKK +P+ + R GY + N Sbjct: 190 EVMISRLRKKFTKTGQDNPISTIRGQGYIFELN 222 >gi|148549507|ref|YP_001269609.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148513565|gb|ABQ80425.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 223 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 70/130 (53%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPI 131 +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + R + GP+ Sbjct: 73 LPVLMLTARSDVKDRVHGLNLGADDYLAKPFELTELEARVKALLRRSVLGGERQQRCGPL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 D R + + L RE+ +L+ L+A G+ ++K Q+ + ++GL DE + +E Sbjct: 133 VYDLDTRRFTLGDDNLTLTSREQSVLQALIARPGRVMSKEQLAAQVFGL-DEEASPDAIE 191 Query: 192 SHISKLRKKL 201 +I +LRKKL Sbjct: 192 IYIHRLRKKL 201 >gi|329116733|ref|ZP_08245450.1| putative response regulator ArlR [Streptococcus parauberis NCFD 2020] gi|326907138|gb|EGE54052.1| putative response regulator ArlR [Streptococcus parauberis NCFD 2020] Length = 224 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 16/141 (11%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEV 142 F+ G DD + KP + E+ R+ A+ +R L N + +T V D ++ E+ Sbjct: 91 FELGADDYLTKPFYLEELKMRIQALLKRSGKLMDSSLYYKNLKVDTERNVVTVDEKEVEL 150 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 G+ F L L Y + N+ + K+QIF I+G FD +VVE ++SK+RKKL+ Sbjct: 151 LGKEFEL-------LVYFLQNQNVILPKSQIFDRIWG-FDSDTTISVVEVYVSKIRKKLK 202 Query: 203 NKLGFDPVDSKRFLGYSIDWN 223 + + R +GY + N Sbjct: 203 GTKFVADLQTLRSVGYILKTN 223 >gi|317499278|ref|ZP_07957551.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316893447|gb|EFV15656.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 222 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/204 (24%), Positives = 103/204 (50%), Gaps = 8/204 (3%) Query: 19 FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGI 78 +G + ++L+ F+++ ++ REDV I + + R IR S+VP+I + Sbjct: 25 YGYEIIALDRFDTV-----VEDCLREDVDLILLDINLPFYDGYYVCRTIREKSEVPIIVV 79 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSD 136 + S L + G DD V KP + + +LAR++A+ +R + N+ + +++ + Sbjct: 80 TSRDSEMDELMSINLGADDFVTKPYNTQILLARISAMLKRTQKETVNDSLQYKGLKLQLN 139 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 + L + E RIL L+ ++ V++ Q+ +++ +E +++N + +I++ Sbjct: 140 NSTVIYKDHEIELSKNEIRILYTLLQHKENIVSRDQLMESLWQ-SNEFIDDNTLTVNINR 198 Query: 197 LRKKLRNKLGFDPVDSKRFLGYSI 220 +RKKL D + +KR GY I Sbjct: 199 VRKKLEAAGLKDFIKTKRGQGYMI 222 >gi|289677034|ref|ZP_06497924.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae FF5] gi|330980158|gb|EGH78344.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 247 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 85/167 (50%), Gaps = 11/167 (6%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE + R +R P++ ++ ++ D+G DD V KP+H R +LAR+ Sbjct: 59 LMLPGEDGFSICRSVRDRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARI 118 Query: 113 AAIYRRLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 A+ RR + R GP+ V + R+ ++ + L E +L L+AN G+ Sbjct: 119 KALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGR 178 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +++ +IF+A+ G+ + ++ ++ IS++R K+G DP+ + Sbjct: 179 TLSREEIFTALRGVGYDG-QDRSIDVRISRIRP----KIGDDPIHPR 220 >gi|258538729|ref|YP_003173228.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|257150405|emb|CAR89377.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] Length = 226 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 4/155 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA + VP+I ++ + Q + +G DD V KP E+ AR+ A RR + +A Sbjct: 69 IRAITSVPIIFLTARITDQDKVQGLGAGGDDYVTKPFSLTELGARIKAHVRRAHQPDKQA 128 Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G I + V L ++ +++E+L N G+ ++ Q++ I+G +D Sbjct: 129 QIAVFGRIMIDYHAHQVSVDTTCLKLENKQYQLIEWLSLNPGQVFSREQLYEKIWG-YDA 187 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E V+ HI ++RK P+ + +GY Sbjct: 188 QGDERVITEHIRRIRKLFDACQVTSPIVTVWGVGY 222 >gi|182419810|ref|ZP_02951050.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237666867|ref|ZP_04526852.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376358|gb|EDT73940.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237658066|gb|EEP55621.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 231 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 14/164 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125 +R S +P+I I+ S + G DD + KPI E+ ARV++ RR + + NR Sbjct: 66 VRESSTIPIICITAMGSDSDKVLALGIGADDYLVKPISPIELCARVSSHLRRCYRYTENR 125 Query: 126 AE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + TG ++++SD + + L +E +IL+ L++N G+ K QI+ ++G Sbjct: 126 EDAYATGDLKIYSDTFEVYKGDKKIELNPKEFKILKLLISNAGRVFTKKQIYEQVWGEIY 185 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221 N++ H+S +R+K+ + DP + + R +GY I+ Sbjct: 186 IGDSNNIM-VHLSHIREKIED----DPKNPVYIKTIRGIGYKIE 224 >gi|66046945|ref|YP_236786.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|63257652|gb|AAY38748.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|330974387|gb|EGH74453.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 247 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 85/167 (50%), Gaps = 11/167 (6%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE + R +R P++ ++ ++ D+G DD V KP+H R +LAR+ Sbjct: 59 LMLPGEDGFSICRSVRDRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARI 118 Query: 113 AAIYRRLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 A+ RR + R GP+ V + R+ ++ + L E +L L+AN G+ Sbjct: 119 KALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGR 178 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +++ +IF+A+ G+ + ++ ++ IS++R K+G DP+ + Sbjct: 179 TLSREEIFTALRGVGYDG-QDRSIDVRISRIRP----KIGDDPIHPR 220 >gi|298244434|ref|ZP_06968240.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297551915|gb|EFH85780.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 235 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 14/207 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEK 59 +++DD V+D G S EGF + + Q + + + L+ G Sbjct: 19 LIVDDEPQVRD-----LLQMGFSYEGFQVFLATNGPDATQVAQEQQPDVVILDLMLPGYD 73 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R +P+I ++ + + D+G DD + KP RE++AR A+ RR Sbjct: 74 GLEVTRRLRRSRDLPIIMLTARDEIDDRVTGLDAGADDYLTKPFAFRELMARTRAVLRRR 133 Query: 120 KVSNNRAETGPIRVFSDGRDPE---VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 NN A+ + + R + RE +LE+ + N + +++ I S Sbjct: 134 --GNNIADILTFQGITLNRGTHQVTFHDQPIDFTPREFDLLEFFLMNPRQALSRDMIMSR 191 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203 ++G +D ++N+VE +I LR+KL + Sbjct: 192 VWG-YDYMGDDNIVEVYIRHLREKLHD 217 >gi|294651309|ref|ZP_06728630.1| Kdp operon response regulator [Acinetobacter haemolyticus ATCC 19194] gi|292822781|gb|EFF81663.1| Kdp operon response regulator [Acinetobacter haemolyticus ATCC 19194] Length = 234 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 20/149 (13%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S VP+I +S P + D+G +D V KP +E+ AR+ ++R N+A Sbjct: 74 LRQWSDVPVIVLSARPDENQKIKLLDAGANDYVTKPFSIQELCARMRVLFR------NKA 127 Query: 127 ETGPIR-VFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 T + VF+DG+ V+ E L ++E ++L L+ ++GK V + QI + + Sbjct: 128 PTLEQKTVFNDGKLFVDIAEHIVRVENEEIILTKKELQLLALLIRHQGKIVTQKQIMTEL 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG 206 +G+ + EE+ ++ L KKLR K+G Sbjct: 188 WGV---SHEEDT--HYLRILVKKLRTKIG 211 >gi|226308071|ref|YP_002768031.1| two-component response regulator PrrA [Rhodococcus erythropolis PR4] gi|229488493|ref|ZP_04382359.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis SK121] gi|226187188|dbj|BAH35292.1| two-component response regulator PrrA [Rhodococcus erythropolis PR4] gi|229323997|gb|EEN89752.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis SK121] Length = 234 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 8/139 (5%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV------- 121 A +++P+ +S S+ + +SG DD + KP E++AR+ A+ RR Sbjct: 73 AGNEIPICVLSARNSVDDRIAGLESGADDYMVKPFVLAELVARIRAMLRRSNTPAGDHSE 132 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N G + + GR V G+ PL +RE +LE L N G + + ++ ++G + Sbjct: 133 GTNTLRVGNLDIDLSGRRVRVDGKEVPLTKREFELLEVLAHNSGIVLTRERLLELVWG-Y 191 Query: 182 DEAVEENVVESHISKLRKK 200 D + NVV+ I LR+K Sbjct: 192 DFVADTNVVDVFIGYLRRK 210 >gi|255281413|ref|ZP_05345968.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM 14469] gi|255267901|gb|EET61106.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM 14469] Length = 228 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 1/146 (0%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P+I ++ S++ + F+ G DD + KP + + A+ +R Sbjct: 66 EVLKEIRKTSNIPVIMLTARSSVEDQMSGFEKGADDYITKPYTLELVRLHIEAVLKRAGK 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N E I V D + + + R+E +L Y + N G +A+ I A++G + Sbjct: 126 LANILEYQDISVNLDAKKVYWKDKYIETTRKEYELLVYFIENSGIVLARNNILDAVWG-Y 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGF 207 D + V++ + +LRKKL + + Sbjct: 185 DYVGDIRTVDTLVKQLRKKLTEECTY 210 >gi|254420171|ref|ZP_05033895.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] gi|196186348|gb|EDX81324.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] Length = 224 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 2/131 (1%) Query: 91 FDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 +SG DD + KP RE+LAR+ A+ R L+V + GP+ + + L Sbjct: 91 LESGADDYIAKPFEPRELLARIRIALRRSLEVRRETRQFGPLLYDLESGVFFIDEAPLTL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 R E +LE LMA G + + + + +YG +D+ V N +ES IS+LR L + Sbjct: 151 RRTEALVLEALMARPGAVIQRETLEARVYG-YDKVVNANSLESQISRLRTNLARRTDRVR 209 Query: 210 VDSKRFLGYSI 220 + + R LGY + Sbjct: 210 IRAVRGLGYCL 220 >gi|169335330|ref|ZP_02862523.1| hypothetical protein ANASTE_01742 [Anaerofustis stercorihominis DSM 17244] gi|169258068|gb|EDS72034.1| hypothetical protein ANASTE_01742 [Anaerofustis stercorihominis DSM 17244] Length = 221 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 85/161 (52%), Gaps = 14/161 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S +P+I ++ + L + G DD V KP + R ++AR+ A+ +R V+ N + Sbjct: 67 VRKSSDIPIIMLTSRNNEMDELLSINYGADDYVTKPYNPRILIARIEALLKR--VNKNFS 124 Query: 127 ETGPIRVFSDGRDPEVQGEVFP-------LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +F +G + F L + E +IL +L+ N+ + V++ ++ ++ Sbjct: 125 DV----IFYNGLKLNISKSTFSYNDKEIDLSKNELKILHFLLKNKSRIVSRDELMDYLWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E V++N + +I++LRKKL + + +++KR GY I Sbjct: 181 -NNEFVDDNTLTVNINRLRKKLESVELKNFIETKRGQGYII 220 >gi|21244692|ref|NP_644274.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|294626751|ref|ZP_06705346.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|21110381|gb|AAM38810.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|292598999|gb|EFF43141.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 221 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 9/154 (5%) Query: 57 GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 GE L + R +R+H P+I ++ L + D+G DD + KP E++AR+ A+ Sbjct: 56 GESGLSVIRFMRSHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAV 115 Query: 116 YRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR S R G + + R G+ L E R+L LM G+ V K Sbjct: 116 TRR---SQGRVVPLLSHGDVCMDPSSRKVTKDGKWVALSAHEYRLLLALMERAGRVVTKD 172 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 Q+ IYG E N++ ++ +LR+KL + L Sbjct: 173 QLEEGIYGGPSEG-GSNMIAVYVHQLRRKLGDAL 205 >gi|94984303|ref|YP_603667.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554584|gb|ABF44498.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 222 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 98/212 (46%), Gaps = 15/212 (7%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLELPRIIR 68 L + GY L DGV+ G +SARE+ + +G + E+ R +R Sbjct: 22 LEQAGYRVLTAPDGVT--GL----------TSARENSPDLVILDLGLPDFDGAEIARRLR 69 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 S VP+I ++ ++ ++ ++G DD + KP H E++ARV + R + Sbjct: 70 KTSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARV-KVQLRHQQHGEVISI 128 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + R G L +E +L +L G+ ++ +I ++ + N Sbjct: 129 GALEIHPQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWN-GELPSNSN 187 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 VV+ H++ +R KLR+ G+ + + R +GY++ Sbjct: 188 VVDVHMANMRAKLRDLDGYGIIRTVRGIGYAL 219 >gi|300697997|ref|YP_003748658.1| DNA-binding response regulator in two-component system [Ralstonia solanacearum CFBP2957] gi|299074721|emb|CBJ54279.1| DNA-binding response regulator in two-component system [Ralstonia solanacearum CFBP2957] Length = 232 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 17/229 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGE 58 ++I+D A V D F G+ EG+ L E LQ + + + + L+ G Sbjct: 9 ILVIEDDARVSD-----FLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGI 63 Query: 59 KVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LEL + +RA + VP++ ++ + + G DD + KP E+LAR+ A+ R Sbjct: 64 SGLELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLR 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R + R + ++V D E G+ PL +E LE LM+ G+ ++ + Sbjct: 124 RGR--EQRPKVNVLQVADLVLDRERMQVTRAGKPIPLTAKELAFLELLMSAPGRIYSRER 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I S ++G ++ + N+V+ ++ +LR K+ + + R LGY +D Sbjct: 182 ILSNVWGANEDPL-TNIVDVYVRRLRSKIDEGHPVPLLKTVRGLGYRLD 229 >gi|229143070|ref|ZP_04271504.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24] gi|296501093|ref|YP_003662793.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|228640399|gb|EEK96795.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24] gi|296322145|gb|ADH05073.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 237 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 15/162 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 63 IEVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V SNN A+ F + E L +E +L++ +N G+ KTQ Sbjct: 123 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213 +F ++ D +E +N V HI KLRKK+ DP + K Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218 >gi|182684578|ref|YP_001836325.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|182629912|gb|ACB90860.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] Length = 255 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP + +LA+V + RR Sbjct: 97 IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 156 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + + D QG+V L + E +IL L + G VA+ + ++ D Sbjct: 157 SLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 215 Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +GF +++K+ +GY + Sbjct: 216 FIDDNTLSVNVARLRKKLEEQGLVGF--IETKKGIGYGL 252 >gi|170754214|ref|YP_001781686.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169119426|gb|ACA43262.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 223 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 8/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + R +R S VP+I ++ S L + G DD V KP + +LAR+ I +R Sbjct: 63 ICREMRKTSDVPIIIVTSRDSEVDELISMNLGADDFVTKPYNTEILLARITNILKRTYGN 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 LK +NN + + + L + E +IL YL+ NRG V + + ++ Sbjct: 123 LK-TNNTLNYKDFNLNLSNATLIYKDKSLELTKNEVKILSYLINNRGNIVKRDSLMEYLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 D V+++ + +I++LRKKL+ ++G +P++++R LGY Sbjct: 182 K-SDYFVDDSTLTVNINRLRKKLQ-EIGIENPIETRRGLGY 220 >gi|83594245|ref|YP_427997.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577159|gb|ABC23710.1| two component transcriptional regulator, winged helix family [Rhodospirillum rubrum ATCC 11170] Length = 227 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 7/168 (4%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L + R +RA + VP++ +S + + +G DD + KP E+LAR+ A+ RR Sbjct: 60 LTIVRTLRASGKTVPVLILSALGEVDDRVKGLRAGGDDYLVKPFAFAELLARIDALTRRT 119 Query: 120 KVSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S+ R G + + R L RE R+LEYLM + + V +T + Sbjct: 120 AGSDAEQTRLRAGEVEMDLLARRVTRGSRTIDLQPREFRLLEYLMRHADQVVTRTMLLEN 179 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ FD + NVV+ HIS+LR+K+ +++ R GY + N Sbjct: 180 VWDYHFDP--QTNVVDVHISRLRRKMDEGFAQPFLETVRGAGYVLRTN 225 >gi|16078390|ref|NP_389208.1| two-component response regulator YkoH [Bacillus subtilis subsp. subtilis str. 168] gi|221309187|ref|ZP_03591034.1| hypothetical protein Bsubs1_07341 [Bacillus subtilis subsp. subtilis str. 168] gi|221313513|ref|ZP_03595318.1| hypothetical protein BsubsN3_07282 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318435|ref|ZP_03599729.1| hypothetical protein BsubsJ_07216 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322709|ref|ZP_03604003.1| hypothetical protein BsubsS_07327 [Bacillus subtilis subsp. subtilis str. SMY] gi|23396975|sp|O34903|YKOG_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein ykoG gi|2632045|emb|CAA05604.1| YkoG [Bacillus subtilis] gi|2633679|emb|CAB13182.1| two-component response regulator [YkoH] [Bacillus subtilis subsp. subtilis str. 168] gi|291483853|dbj|BAI84928.1| hypothetical protein BSNT_02229 [Bacillus subtilis subsp. natto BEST195] Length = 228 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 9/164 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + SQ P+I ++ S+ + D G +D V KP E+LAR+ A R + Sbjct: 66 LRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR--QNG 123 Query: 123 NNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + D R E EV L RE +L Y++ + + + + QI S+ Sbjct: 124 TKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSS 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD + NVV+ +I +RKKL + + R +GY+I Sbjct: 184 VWG-FDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAI 226 >gi|113969921|ref|YP_733714.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|114047157|ref|YP_737707.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|113884605|gb|ABI38657.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] gi|113888599|gb|ABI42650.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 227 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 3/151 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130 + P++ ++ + Q ++ ++G DD + KP E++AR+ A+ RR +G Sbjct: 75 KAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPVITSGE 134 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 +++ + + E+ + E ILEYLM + + VAK ++ IYG D+ + N + Sbjct: 135 LKLDLAAKQVTLGNEIMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDPNTI 192 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E +S+LRKKL +P+ + R GY + Sbjct: 193 EVMVSRLRKKLTRDGIDNPIATIRGQGYKFN 223 >gi|313496636|gb|ADR58002.1| GltR [Pseudomonas putida BIRD-1] Length = 239 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 13/187 (6%) Query: 28 GFNSLEFEEWLQSS---AREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84 G+N L + Q AR V + L+ GE L L R ++A + +I +S S Sbjct: 26 GYNVLAAADGQQMRDQLARHKVELVVLDLMLPGEDGLSLCRQLQATPGLAVIMLSAKGST 85 Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI--RVFSDGRDPEV 142 + + G DD + KP RE++AR+ A+ RR + AE + ++F+ R V Sbjct: 86 LDRIIGLEVGADDYLAKPFEPRELIARIKAVLRRPQRLGTSAEEPVVDAQLFAGFRLEHV 145 Query: 143 Q-------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 + GE LPR + R+L L+ + V++ Q+ + +G D ++ V+ +S Sbjct: 146 KRLLTRPDGETLTLPRSDYRVLRELLEANNRVVSRDQLTRSAFG-RDHLPDDRSVDMCVS 204 Query: 196 KLRKKLR 202 +LR++LR Sbjct: 205 RLRQQLR 211 >gi|260494747|ref|ZP_05814877.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_33] gi|260197909|gb|EEW95426.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_33] Length = 224 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 84/160 (52%), Gaps = 5/160 (3%) Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +RA+ ++ P++ ++ +++ + D G DD + KP E+LAR+ AI RR K Sbjct: 61 EVVKNLRANKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRR-K 119 Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N N + + V + + G+ L +E +LEYL+ N+G+ +++ +I ++ Sbjct: 120 YGNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E E N+++ I +RKK+ + +KR LGY Sbjct: 180 DYAYEG-ESNIIDVLIKNIRKKIDLGNSKPLIHTKRGLGY 218 >gi|157150522|ref|YP_001450697.1| response regulator protein [Streptococcus gordonii str. Challis substr. CH1] gi|262282995|ref|ZP_06060762.1| response regulator protein [Streptococcus sp. 2_1_36FAA] gi|157075316|gb|ABV09999.1| response regulator protein [Streptococcus gordonii str. Challis substr. CH1] gi|262261247|gb|EEY79946.1| response regulator protein [Streptococcus sp. 2_1_36FAA] Length = 218 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 7/160 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + IR SQ+P++ ++ T L F+ + D V KP ++ R+ I RR Sbjct: 61 LDVLKEIRKTSQIPVMILTALDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRTA 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V + G +RV + QGE L ++E ILE L +G V + Q+ + I+G Sbjct: 121 VYSEIV-IGDLRVVLEDCTIFWQGEKLALTKKEYEILEVLAKRKGHLVTRDQLMNTIWGY 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ V+++HI +RKK+ P+ + +GY + Sbjct: 180 SE--LDSRVLDNHIKNIRKKVPGI----PLSTITGMGYQL 213 >gi|119476400|ref|ZP_01616751.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [marine gamma proteobacterium HTCC2143] gi|119450264|gb|EAW31499.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [marine gamma proteobacterium HTCC2143] Length = 228 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 5/155 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A ++ P++ +S + + +G DD + KP E+LAR+ A+ RR K S + + Sbjct: 70 ADNKSPVLILSALGEVDDRVKGLKAGGDDYLVKPFAFVELLARIEALLRRQKSSTSETKL 129 Query: 129 GPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 + D +V G F L RE ++LEYLM + G+ V +T + ++ FD Sbjct: 130 KVADLEMDLLAHKVTRGGGGFNLQPREYKLLEYLMKHAGQVVTRTMLLENVWEYHFDP-- 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ HIS+LR+K+ + + R GY + Sbjct: 188 QTNVIDVHISRLRQKIDKDFDQQLLSTVRGAGYML 222 >gi|70731211|ref|YP_260952.1| DNA-binding response regulator QseB [Pseudomonas fluorescens Pf-5] gi|68345510|gb|AAY93116.1| DNA-binding response regulator QseB, putative [Pseudomonas fluorescens Pf-5] Length = 220 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 107/236 (45%), Gaps = 38/236 (16%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF-------- 52 + ++ DDRAL + +AL S EG+ +WLQ A SA+ A Sbjct: 3 LLLVEDDRALGQGIRVAL------SAEGYTL----DWLQDGA----SALHALRTESFDLL 48 Query: 53 ---LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108 L LEL + +RA Q +P++ ++ + D+G DD + KP E Sbjct: 49 LLDLGLPRLDGLELLQQLRAAQQDLPVLILTARDGTAERIAGLDAGADDYLVKPFDVEEF 108 Query: 109 LARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 ARV A+ RR S RA E IR+ + + Q L E ++L LM Sbjct: 109 KARVRALLRR---SQGRAQPLLEHAGIRLDPANQQVQYQDNEVVLTPMEYQLLHQLMVRP 165 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 GK V + ++ A+YG + + VE N +E I LRKKL ++L + + R +GY + Sbjct: 166 GKVVTRERLSRALYG-WQDRVESNTLEVLIHNLRKKLCSEL----IRTVRGVGYVL 216 >gi|152977665|ref|YP_001377182.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026417|gb|ABS24187.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 235 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 20/219 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ + DG +E ++ + E + ++ G+ LE+ R IR Sbjct: 23 LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 71 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122 S++P+I ++ S + + G DD V KP RE+LARV A RR K Sbjct: 72 SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 131 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N GPI + + + E L RE +L YL + G+ + + + ++G +D Sbjct: 132 NTEMVIGPIVINPNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 190 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + V+ + +LR+K+ + + ++R +GY + Sbjct: 191 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229 >gi|134298626|ref|YP_001112122.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051326|gb|ABO49297.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 223 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 81/159 (50%), Gaps = 2/159 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + R + P++ +S +++ + + G DD + KP E+LARV A+ RR Sbjct: 63 EICQRFRKDNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRRRIT 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N + +++ + R+ G + L RE +L + M + + + + QI ++GL Sbjct: 123 ANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWGL- 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D NV+E +I+ LR+K+ + G + + R +GY + Sbjct: 182 DFTGGSNVLEVYINMLRQKIED-YGSRIIHTVRGVGYVL 219 >gi|317500934|ref|ZP_07959144.1| two-component system response regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|331089166|ref|ZP_08338069.1| hypothetical protein HMPREF1025_01652 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897637|gb|EFV19698.1| two-component system response regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|330405943|gb|EGG85469.1| hypothetical protein HMPREF1025_01652 [Lachnospiraceae bacterium 3_1_46FAA] Length = 226 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 6/149 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G L+L IR P+I ++ S Q ++ +G DD + KP E+LAR++A Sbjct: 59 GMNGLDLCVSIRDFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHL 118 Query: 117 RRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR + S+N+ ++ I +SD R ++G L +E I++ L +N G+ + + Sbjct: 119 RREQRSHNKTKSKFSEDLIIDYSD-RSLYIKGHKIELSNKEFEIIQLLSSNAGQVFDREK 177 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I+ I+G+ D + V++ HI K+R K Sbjct: 178 IYENIWGI-DGNGDSVVIKEHIRKIRLKF 205 >gi|310827010|ref|YP_003959367.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308738744|gb|ADO36404.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 230 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 13/144 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP+I IS S+ +D G DD + KP E+LARV A RR V+ + A Sbjct: 69 IRRSSTVPIIIISAKASVADRIDLLKLGADDFICKPFDVGEVLARVEAQLRR-AVAFSEA 127 Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +G + + +D + ++ + L RE +IL LM++ K + +F+ ++ Sbjct: 128 GGSVKILTSGDLVLDADSMEVRLKDQPVSLTVREFKILHLLMSHPKKVFTRENLFTQVW- 186 Query: 180 LFDEAV--EENVVESHISKLRKKL 201 ++A E+N V HIS +R KL Sbjct: 187 --EDAFLGEDNTVNVHISNIRSKL 208 >gi|323343000|ref|ZP_08083231.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463064|gb|EFY08259.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 231 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 8/152 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++L R IR Q+P++ ++ + + F +G DD V KP + E+ RV A+ RR Sbjct: 60 IKLCRKIRDAHQIPILFLTAKEKEEDVVRGFSAGADDYVMKPFSYLELSVRVKALLRRYC 119 Query: 121 VSNNRAETGPIRVFSDG------RDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ + + +G R EV G + L RE RIL L+ N G+ Q Sbjct: 120 NYGSKQQGNDYEMLEEGNLRLNRRTNEVYKNGVLLDLTEREYRILRLLLGNPGRIYTMEQ 179 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 +F ++ N V HI LRKK+ ++ Sbjct: 180 LFEIVWEDTYFYSCSNTVMVHIRNLRKKVEDE 211 >gi|229099893|ref|ZP_04230816.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] gi|229106054|ref|ZP_04236673.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|229118956|ref|ZP_04248301.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228664481|gb|EEL19977.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228677373|gb|EEL31631.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|228683508|gb|EEL37463.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] Length = 234 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 99/219 (45%), Gaps = 20/219 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ + DG +E ++ + E + ++ G+ LE+ R IR Sbjct: 22 LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122 +S++P+I ++ S + + G DD V KP RE+LARV A RR K Sbjct: 71 NSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 130 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N GPI + + + E L RE +L YL + G+ + + + ++G +D Sbjct: 131 NTEMVIGPIIINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 189 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + V+ + +LR+K+ + + ++R +GY + Sbjct: 190 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228 >gi|254420510|ref|ZP_05034234.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] gi|196186687|gb|EDX81663.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] Length = 231 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 4/153 (2%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126 RA P++ ++ L+ + D+G DD + KP E+ AR AI RR + Sbjct: 74 RAADLTPILVLTARGGLEDRVTGLDAGADDYLVKPFDAAELSARCRAILRRPGRRMAPVL 133 Query: 127 ETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G +R F G+V L RRE +LE LM G V + + ++Y F+E V Sbjct: 134 QVGGLR-FDVAARQAAHGDVPIDLSRREGDLLETLMRRAGSVVTRGSLEESLYA-FNEPV 191 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 N VE +S+LR+KL + + + R LGY Sbjct: 192 TPNAVEMAVSRLRRKLDDAGCTGVLHTVRGLGY 224 >gi|163731437|ref|ZP_02138884.1| DNA-binding response regulator, putative [Roseobacter litoralis Och 149] gi|161394891|gb|EDQ19213.1| DNA-binding response regulator, putative [Roseobacter litoralis Och 149] Length = 234 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 99/223 (44%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 F+L++D + +A DG ++ +E D+ ++ L G G Sbjct: 16 FLLVEDNIELAQALLARLRLDGHVIDHAERIEDAMAYAQVGDYDLILLDIMLPDGDGRDF 75 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ R + P+I ++ + + D G DD V KP H E+ AR A+ RR Sbjct: 76 LQHHR--QGQKDTPVIILTARSQVSDRITLLDLGADDYVTKPFDHAELEARCRAVLRRRV 133 Query: 121 VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S +F R V G+ L RE R+LE + G+ +K ++ ++ Sbjct: 134 GSAQTVTQLRDVIFDPVRGSLSVAGQSVKLRNRELRLLELFINAPGQLFSKQKLVDRLFS 193 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +DE V +N +E ++ +LRK L ++L + + R LGYS++ Sbjct: 194 -YDEDVSDNAIEVYVGRLRKHLEPSQL---RIRTSRGLGYSLE 232 >gi|149915232|ref|ZP_01903760.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. AzwK-3b] gi|149810953|gb|EDM70792.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. AzwK-3b] Length = 257 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 3/124 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R + P++ +S + + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRLARIDT--PILILSGADDTENKIKGFGFGADDYLTKPFHREELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + TG I V D + +V+G L +E ++LE L +G + K + Sbjct: 117 RRSKGHSQSVIRTGRINVNLDAKTVDVEGRTVHLTGKEYQMLELLSLRKGTTLTKEMFLN 176 Query: 176 AIYG 179 +YG Sbjct: 177 HLYG 180 >gi|239624161|ref|ZP_04667192.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520547|gb|EEQ60413.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 224 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + P++ ++ S+ + D G DD + KP E+LAR+ + R K S Sbjct: 63 LKRLRSLGKETPVLFLTARDSIADRVAGLDLGADDYLIKPFDFDELLARIRVLTR--KRS 120 Query: 123 NNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +R G +R+ + L RE ILEYL N+GK +++ QI + ++ Sbjct: 121 THRTSVIAIGDLRIDTGSHSVVRGARAIELSSREYAILEYLALNQGKVLSREQIENHVWN 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 FD + NVV+ +IS LRKK+ Sbjct: 181 -FDYSGGTNVVDVYISYLRKKI 201 >gi|261407294|ref|YP_003243535.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283757|gb|ACX65728.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 232 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 10/150 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +EL + IR S+VP++ IS S G DD ++KP E+ ARV A RR Sbjct: 62 MELLKHIRETSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRAT 121 Query: 121 V---SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 V + ++ P+ F D +V+G+ PL +E IL+ L+ + + K Sbjct: 122 VYAETESKPADPPVITFKDLVLDLHSFSVKVKGKSVPLTAKEFHILKLLLTHHSRVFTKE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 QI+ I+ D ENV+ HI +LR+K+ Sbjct: 182 QIYQLIWE-EDYYGNENVINVHIRRLREKI 210 >gi|139438317|ref|ZP_01771870.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC 25986] gi|133776514|gb|EBA40334.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC 25986] Length = 231 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 65/149 (43%), Gaps = 8/149 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R IR+ P+I ++ + Q + G DD V KP E++ARV A RR Sbjct: 62 FELLRTIRSSHTYPVIMLTARDAQQDKIGGLSLGADDYVVKPFRPLELIARVHAQLRRYT 121 Query: 121 VSNNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 +RA+ + + D R V G L E IL YL+ +RG VA Sbjct: 122 SYGSRAQAAESPTIQLDGLEINRDARSVTVDGSPVRLTPTEYSILLYLVEHRGSVVAVED 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 +F A++ N V HI LR+K+ Sbjct: 182 LFRAVWNEDFMPGSNNTVMVHIRHLREKI 210 >gi|82545283|ref|YP_409230.1| DNA-binding transcriptional regulator QseB [Shigella boydii Sb227] gi|81246694|gb|ABB67402.1| QseB [Shigella boydii Sb227] gi|332092043|gb|EGI97121.1| transcriptional regulatory protein qseB [Shigella boydii 3594-74] Length = 219 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 L---REWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + R + E L +E +LE LM N G+ + + I +Y Sbjct: 120 NGQASNELRHGNVMLDPGKRIATLASEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 180 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 216 >gi|229017942|ref|ZP_04174820.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH1273] gi|229024164|ref|ZP_04180630.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH1272] gi|228737121|gb|EEL87650.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH1272] gi|228743367|gb|EEL93489.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH1273] Length = 224 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 15/167 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +RA P+I ++ S+ + DSG DD + KP E+LAR+ I+RR Sbjct: 61 LEVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRR-- 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAKT 171 N + P F +D ++Q E L +E +L M N + + + Sbjct: 119 -EENTEQKHP--SFLTFKDLQLQIESRTITKGNEEIELTNKEFELLFMFMKNINRVLTRD 175 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + ++G +D VE N+V+ ++ LR KL + + + + R GY Sbjct: 176 ILLDQVWG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGY 221 >gi|113953975|ref|YP_731313.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113881326|gb|ABI46284.1| DNA-binding response regulator [Synechococcus sp. CC9311] Length = 250 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 78/150 (52%), Gaps = 11/150 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120 RI + P++ ++ + + + D+GVDD + KP E++AR+ A+ RR + Sbjct: 77 RIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRAMQRRAQGFTG 136 Query: 121 -VSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A++ G + + ++ RD G+ L +E +L +LM GK + +++I Sbjct: 137 SAQGNDADSTFLSVGGLTINTETRDVHRSGQKIQLSVKEYELLCFLMRGNGKVLERSEIM 196 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK 204 ++G D ++N+++ +I LR+K+ NK Sbjct: 197 KGVWG-EDFYGDDNLLDVYIRYLRQKVENK 225 >gi|117928656|ref|YP_873207.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649119|gb|ABK53221.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 246 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 3/128 (2%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152 G DD V KP E++ARV AI RR + +N+R + + D + G + L Sbjct: 99 GGDDYVTKPFSLAELVARVHAILRRTRGTTNSRLVFADLELDDDTHEVTRGGRLIELTAT 158 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E R+L YL+AN K + + Q+ ++ +D + V+E++IS LRKK+ + G + + Sbjct: 159 EYRLLRYLLANARKVLTRAQLLDHVWD-YDFGGDSGVLETYISYLRKKI-DAEGPPLIHT 216 Query: 213 KRFLGYSI 220 R +GY++ Sbjct: 217 VRGVGYTL 224 >gi|322391842|ref|ZP_08065307.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321145322|gb|EFX40718.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 234 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 11/153 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ + IR S VP+I +S S + + G DD V KP +RE+ ARV A+ RR Sbjct: 61 LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTE 120 Query: 119 -LKVSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + V N ++ G + + D + GE L RE +L +L ++ G+ + + Sbjct: 121 LIAVDNQEEDSKLQSLQIGDLEILPDAYVAKKYGEELDLTHREFELLHHLASHIGQVITR 180 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ I +LR+K+ + Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 212 >gi|299538648|ref|ZP_07051931.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298726235|gb|EFI66827.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 225 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 79/153 (51%), Gaps = 2/153 (1%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AET 128 ++ +P++ ++ + F G DD + KP E++ RV +I +R ++S ++ E Sbjct: 71 NTDLPILMLTAKGETSQKIKGFHLGTDDYLVKPFEPAELIVRVKSILKRYRISLSQVVEA 130 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G +++ + E+ GE+ L +E +L L + GK ++ Q+ I+G +D +E Sbjct: 131 GHVKLNRHTHEVEMNGEMILLRLKEFELLFTLASYVGKTFSREQLIEEIWG-YDYEGDER 189 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V+ HI ++R++ + + + R LGY ++ Sbjct: 190 TVDVHIKRIRERFPQEASGIAIRTIRGLGYRLE 222 >gi|229175534|ref|ZP_04303044.1| Two-component response regulator [Bacillus cereus MM3] gi|228607930|gb|EEK65242.1| Two-component response regulator [Bacillus cereus MM3] Length = 229 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 66/147 (44%), Gaps = 8/147 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 66 RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVTKK 125 Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E I V R V G L E IL Y M N+G + + Q+ S I Sbjct: 126 PLENEDDTLSIHGIYVHFPSRTVTVDGANITLTHTEFEILVYFMKNQGIVLTREQLISRI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 +G ++ A ++ V SHI LR KL K Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEK 211 >gi|197250760|ref|YP_002147681.1| DNA-binding response regulator TctD [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214463|gb|ACH51860.1| DNA-binding response regulator TctD [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 224 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 108/218 (49%), Gaps = 19/218 (8%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPR 65 ++ALV++G F D V F+ L + L S ++ A+ I G LE+ + Sbjct: 17 EKALVQNG----FAVDCV----FDGLAADHLLHS----EMYALAVLDINMPGMDGLEVVQ 64 Query: 66 IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 +R Q +P++ ++ ++ + + G DD + KP E+ AR+ A+ RR + Sbjct: 65 RLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSAGQVH 124 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + +F D +QG+ L RE+ +L LM R + V++ Q+F ++ L DE Sbjct: 125 EIQQLGELIFHDEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFSLNDEV 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 E+ +E +I +LRKKL+ G D + + R LGY ++ Sbjct: 185 SPES-IELYIHRLRKKLQ---GSDVRITTLRGLGYVLE 218 >gi|22125280|ref|NP_668703.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis KIM 10] gi|45442492|ref|NP_994031.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis biovar Microtus str. 91001] gi|108808286|ref|YP_652202.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Antiqua] gi|108811448|ref|YP_647215.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Nepal516] gi|145599475|ref|YP_001163551.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Pestoides F] gi|162420800|ref|YP_001607462.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Angola] gi|165926055|ref|ZP_02221887.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. F1991016] gi|165937134|ref|ZP_02225699.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. IP275] gi|166008422|ref|ZP_02229320.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. E1979001] gi|166212312|ref|ZP_02238347.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. B42003004] gi|167398888|ref|ZP_02304412.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421266|ref|ZP_02313019.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424469|ref|ZP_02316222.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229838428|ref|ZP_04458587.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895415|ref|ZP_04510587.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis Pestoides A] gi|229898995|ref|ZP_04514139.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis biovar Orientalis str. India 195] gi|229901707|ref|ZP_04516829.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis Nepal516] gi|270489901|ref|ZP_06206975.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294504581|ref|YP_003568643.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis Z176003] gi|21958154|gb|AAM84954.1|AE013741_1 transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis KIM 10] gi|45437357|gb|AAS62908.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis biovar Microtus str. 91001] gi|108775096|gb|ABG17615.1| two-component system response regulator [Yersinia pestis Nepal516] gi|108780199|gb|ABG14257.1| two-component system response regulator [Yersinia pestis Antiqua] gi|145211171|gb|ABP40578.1| two-component system response regulator [Yersinia pestis Pestoides F] gi|162353615|gb|ABX87563.1| transcriptional regulatory protein BaeR [Yersinia pestis Angola] gi|165914997|gb|EDR33609.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. IP275] gi|165922259|gb|EDR39436.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. F1991016] gi|165992804|gb|EDR45105.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. E1979001] gi|166206243|gb|EDR50723.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. B42003004] gi|166960755|gb|EDR56776.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051392|gb|EDR62800.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056351|gb|EDR66120.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681636|gb|EEO77730.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis Nepal516] gi|229687940|gb|EEO80012.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis biovar Orientalis str. India 195] gi|229694794|gb|EEO84841.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701570|gb|EEO89597.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis Pestoides A] gi|262362424|gb|ACY59145.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis D106004] gi|262366567|gb|ACY63124.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis D182038] gi|270338405|gb|EFA49182.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294355040|gb|ADE65381.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis Z176003] gi|320014344|gb|ADV97915.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 239 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 80/174 (45%), Gaps = 9/174 (5%) Query: 36 EWLQSSA------REDVSAIEAF-LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88 +WL + A R+ AI L+ G + L R IR S +P++ ++ L Sbjct: 39 QWLTNGAEVVATVRQTPPAIILLDLMLPGSDGITLCREIRRFSDIPIVMVTAKTEEIDRL 98 Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVF 147 + G DD + KP RE++ARV I RR ++ + P+ + QG + Sbjct: 99 LGLEIGADDYICKPYSPREVVARVKTILRRCSQQRHQPTDDAPLLINESRFQASYQGHML 158 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L E R+L+ L + G ++ Q+ + +Y + V + ++SHI LR+KL Sbjct: 159 ELTPAEFRLLKILASQPGHVFSREQLLNNLYDDY-RVVTDRTIDSHIKNLRRKL 211 >gi|296395434|ref|YP_003660318.1| transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296182581|gb|ADG99487.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 238 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 9/140 (6%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---G 129 +P+ +S S+ ++ ++G DD + KP E++ARV A+ RR ++ A T G Sbjct: 80 IPICVLSARSSVGDRIEGLEAGADDYLTKPFVLGELIARVKALLRRPSTTSRAAPTVEYG 139 Query: 130 PIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 I V GR V E L +RE +L L N G +++T++ ++G +D A Sbjct: 140 VIHVDYLGVDIPGRRVTVDDESIELTKREFELLAALAENTGVVLSRTELLERVWG-YDFA 198 Query: 185 VEENVVESHISKLRKKLRNK 204 + NVV+ + LRKKL K Sbjct: 199 ADTNVVDVFVGYLRKKLELK 218 >gi|295704273|ref|YP_003597348.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294801932|gb|ADF38998.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 226 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 6/142 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +P+I +S + +G DD + KP + E++ARV + RR K N RA Sbjct: 68 IREEKNMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIRRYKKYNERA 127 Query: 127 E-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 E G + + R V+G+ L +E ILE L+ ++G ++ +I+ A++ Sbjct: 128 ERDIIQIGDLEINRSTRLVFVRGQEIRLTPKEFDILELLVRHKGTVMSMGKIYEAVWQ-E 186 Query: 182 DEAVEENVVESHISKLRKKLRN 203 D +N V HI+K+R+K+ + Sbjct: 187 DAFKSDNTVMVHITKIREKIED 208 >gi|289549712|ref|YP_003470616.1| Two-component response regulator YvcP [Staphylococcus lugdunensis HKU09-01] gi|315659659|ref|ZP_07912520.1| response regulator [Staphylococcus lugdunensis M23590] gi|289179244|gb|ADC86489.1| Two-component response regulator YvcP [Staphylococcus lugdunensis HKU09-01] gi|315495392|gb|EFU83726.1| response regulator [Staphylococcus lugdunensis M23590] Length = 221 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 6/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S VP+I IS + G DD + KP + + ++ A+ RR L V++ Sbjct: 66 IRKSSNVPIIFISSRTDNMDQIMAIQMGGDDFIEKPFNLSLTITKIQALLRRTYDLTVNH 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N ++ D + E L E +I++ L N+GK V++T + + + Sbjct: 126 NETTVRDCKLIIDEATLYYKEESVHLSFTELQIIKMLFDNQGKYVSRTALIEKCWE-SEH 184 Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 +++N + ++++LRKKL N +G D +++K+ +GY + Sbjct: 185 FIDDNTLAVNMTRLRKKL-NSIGLEDFIETKKNIGYKV 221 >gi|225570609|ref|ZP_03779634.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM 15053] gi|225160622|gb|EEG73241.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM 15053] Length = 241 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 2/138 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 ++ R S +P+I ++ L ++ G DD + KP + +LA+ A+ RR + Sbjct: 84 KLAREMSNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRSSPAPL 143 Query: 125 RA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 A G I V + G+ L +E +L +LM N G+ A+ Q+ + I+G +D Sbjct: 144 DALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLLNRIWG-YDF 202 Query: 184 AVEENVVESHISKLRKKL 201 V++HI LR+KL Sbjct: 203 EGTTRTVDTHIKTLRQKL 220 >gi|167724100|ref|ZP_02407336.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] Length = 219 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/168 (30%), Positives = 85/168 (50%), Gaps = 10/168 (5%) Query: 55 GKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G+G L+ R +RA S VP+I ++ + + ++G DD + KP E+ ARV+ Sbjct: 57 GRG---LDFLRELRAGGSTVPVIILTALDQVANRIAGLNAGADDYLIKPFDLSELSARVS 113 Query: 114 AIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ RR + N + G + V R G L E +LE L+ + G ++K Q Sbjct: 114 AVARRYSGNPNPLVKLGELAVDIAARSVTRAGARVDLTASEWALLETLIQHPGMILSKPQ 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +Y DE V N +E ++S+LRK KLG + +++ R LGY + Sbjct: 174 LEERLYSFSDE-VGSNTIEVYVSRLRK----KLGAELIETVRGLGYRL 216 >gi|161507847|ref|YP_001577811.1| two-component system regulator [Lactobacillus helveticus DPC 4571] gi|260103140|ref|ZP_05753377.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075] gi|160348836|gb|ABX27510.1| Two-component system regulator [Lactobacillus helveticus DPC 4571] gi|260083050|gb|EEW67170.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075] gi|323466118|gb|ADX69805.1| Two-component system regulator [Lactobacillus helveticus H10] gi|328464789|gb|EGF36104.1| two-component system regulator [Lactobacillus helveticus MTCC 5463] Length = 238 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 24/181 (13%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L+ + +D AI L+ LE+ R +R P+I ++ S+ + D G DD Sbjct: 38 LEDALNQDFDAILLDLMLPDLNGLEIARRVRQVKTTPIIMMTARDSVIDRVSGLDHGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKV-----------------SNNRAETGPIRVFSDGRDP 140 + KP E+LAR+ A+ RR+K+ N ET R+ G Sbjct: 98 YIVKPFAIEELLARLRAVLRRVKIEKDASRVTVAKQKIVKFKNLTIETAN-RIVHRG--- 153 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 G+ L +RE +L L+ N+ V++ Q+ + I+G + +E NVVE ++ LR K Sbjct: 154 --DGKAIDLTKREYNLLMTLIENKNNVVSRDQLLNKIWG-PESNIETNVVEVYVRYLRNK 210 Query: 201 L 201 + Sbjct: 211 I 211 >gi|119897266|ref|YP_932479.1| two-component response regulatory protein [Azoarcus sp. BH72] gi|119669679|emb|CAL93592.1| probable two-component response regulatory protein [Azoarcus sp. BH72] Length = 228 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 3/159 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ S +P++ ++ ++ + D+G DD + KP E+ ARV A+ RR Sbjct: 63 LKRLRARKSALPVLILTAQDGVEDRVRGLDAGADDYLTKPFALPELEARVRALTRRGTGQ 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 E G + R ++ G+V L RE +LE + G+ V+K Q+ + G + Sbjct: 123 PRCIEVGNLSYDQADRVVKICGQVVELSAREIGLLEVFILRVGRLVSKDQLVDHLCG-WG 181 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E V N +E ++ +LRKKL G V + R LGY ++ Sbjct: 182 EEVSSNAIEVYVHRLRKKLEAS-GVRIV-TVRGLGYCLE 218 >gi|118468513|ref|YP_889895.1| DNA-binding response regulator PrrA [Mycobacterium smegmatis str. MC2 155] gi|118169800|gb|ABK70696.1| DNA-binding response regulator PrrA [Mycobacterium smegmatis str. MC2 155] Length = 236 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 15/190 (7%) Query: 23 GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75 G+ L GF+ +++ E L+S+ + +A ++ VL+ ++ A + VP+ Sbjct: 29 GLRLSGFDVSTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 85 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPI 131 +S S+ + ++G DD + KP E++ARV A+ RR S+ + GP+ Sbjct: 86 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSSATFSSETIQVGPL 145 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V GR V G L +RE +L L ++ +++ Q+ ++G +D A + NVV+ Sbjct: 146 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 204 Query: 192 SHISKLRKKL 201 I LR+KL Sbjct: 205 VFIGYLRRKL 214 >gi|84683692|ref|ZP_01011595.1| two-component response regulator [Maritimibacter alkaliphilus HTCC2654] gi|84668435|gb|EAQ14902.1| two-component response regulator [Rhodobacterales bacterium HTCC2654] Length = 223 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 6/165 (3%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L L + +RA P I ++ ++ + ++G DD + KP E+ ARVAA+ RR Sbjct: 60 LSLVKALRAARVATPAIFLTSVGGVEDRIAGLEAGGDDYLVKPFAFGELSARVAALTRRP 119 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 L+ + G + + R+ G L RE +LE+L+ +G+ +T + + Sbjct: 120 PLQAEETTLKAGDLEMDLVRREVRRAGRPIDLLPREFALLEHLLRRKGRVQTRTMLLENV 179 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + FD NVVE+HIS+LR K+ + + + R GY ID Sbjct: 180 WDIHFDPGT--NVVETHISRLRAKVDKPFDHELIRTVRGAGYRID 222 >gi|332880617|ref|ZP_08448291.1| response regulator receiver domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681605|gb|EGJ54528.1| response regulator receiver domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 227 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 4/150 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G VL + +R V +I D S++ ++ + G DD + KP H E+ ARV + Sbjct: 57 GSGLSVLAHLKRMRKQESVIIISAKD--SIEDKVEGLNLGADDYLAKPFHLAELNARVKS 114 Query: 115 IYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR K + + G + + D R V G L R+E +L Y ++N + + + + Sbjct: 115 LLRRKKAGGDTSIVLGNLTLVPDTRKVTVDGNELNLNRKEFDLLYYFISNPNRLINRMAL 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLR 202 +++G D+A + + S + LRKK++ Sbjct: 175 AESVWGDHIDQADSLDFIYSQVKNLRKKMK 204 >gi|319653806|ref|ZP_08007901.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2] gi|317394532|gb|EFV75275.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2] Length = 228 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 11/185 (5%) Query: 35 EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94 EE LQ + +E I ++ G E+ + IRA +P++ +S + G Sbjct: 35 EEGLQKALQEHYDLIILDIMLPGVNGFEICKQIRAVKNIPILFVSAKKEDIDKIRGLGLG 94 Query: 95 VDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFS-----DGRDPEVQGEVFP 148 DD + KP E++ARV A R +++ + +T I V R + GE P Sbjct: 95 ADDYITKPFSPSELVARVKAHLERYERLAGKQTQTNTIFVHGITIDKSARKVYIDGEETP 154 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 +E +L +L+ + + ++K Q++ I+GL + A + + V HI K+R K+ D Sbjct: 155 FTTKEFDLLVFLLMHPNQVLSKEQLYEKIWGL-ESAADVSTVTVHIRKIRGKIEG----D 209 Query: 209 PVDSK 213 P K Sbjct: 210 PAQPK 214 >gi|298501422|ref|YP_003723419.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298235162|gb|ADI66296.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 244 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 102/206 (49%), Gaps = 27/206 (13%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSG 94 ++L++ E AI +++ G +EL + +R+H + P++ ++ ++ + DSG Sbjct: 38 QYLETGWTEYTLAIFDWML-PGVSGIELCKWLRSHQLILPVLMLTAKDRIEEKIIGLDSG 96 Query: 95 VDDVVNKPIHHREILARVAAIYRRL---------KVSNNRAETGPI----------RVFS 135 DD + KP E+LAR+ A+ RR +V + G + R +S Sbjct: 97 ADDYLVKPFDMAELLARLRALQRRSSYVGTTLTPQVQPRHLQVGCLTLNYSTHQLHRQYS 156 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 G++ +VF L +E ++LEY M + + V++ QI S ++ + E V NVV + I Sbjct: 157 HGKN-----QVFSLTVKEFQLLEYFMRHPHQIVSRDQIISQLWEIGAEPV-SNVVAAQIR 210 Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSID 221 LR+KL + +++ +GY ++ Sbjct: 211 LLRRKLGEEEKESLIETVYGVGYRLN 236 >gi|152999147|ref|YP_001364828.1| two component transcriptional regulator [Shewanella baltica OS185] gi|160873754|ref|YP_001553070.1| two component transcriptional regulator [Shewanella baltica OS195] gi|151363765|gb|ABS06765.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|160859276|gb|ABX47810.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|315265979|gb|ADT92832.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 227 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 100/217 (46%), Gaps = 16/217 (7%) Query: 16 IALFGDDGVSLEGFNSLEFEEWLQ-----SSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70 IA F +G+ + FN + Q S+ DV ++ L G+ L++ R +R Sbjct: 12 IADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGR--DGLDILRSLRQQ 69 Query: 71 S-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AET 128 P+I ++ L + D G DD + KP + E+ AR+ A+ RR + E Sbjct: 70 GVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHGGTQQHVVEV 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187 G +++ R QG+ L RE +LE+LM + + + + Q+ ++G FD Sbjct: 130 GALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVWGYDFDPCT-- 187 Query: 188 NVVESHISKLRKKLRN--KLG--FDPVDSKRFLGYSI 220 NVV+ I ++R K+ + K G ++S R GY + Sbjct: 188 NVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRL 224 >gi|83954225|ref|ZP_00962945.1| two-component response regulator [Sulfitobacter sp. NAS-14.1] gi|83841262|gb|EAP80432.1| two-component response regulator [Sulfitobacter sp. NAS-14.1] Length = 224 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 5/156 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126 +Q P++ ++ + ++ ++G DD + KP E+ ARVAA+ RR + + + Sbjct: 70 TKNQTPVLFLTSLGGVDDRIEGLNAGGDDYLVKPFAFGELSARVAALARRPRGTQDEIVL 129 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 G + + R G+ L RE +LE+L+ +G+ +T + A++ + FD Sbjct: 130 RAGDLEMDLVRRKVTRAGQPIDLLPREFALLEHLLRRKGRVQTRTMLLEAVWDISFDP-- 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVVE+HIS+LR K+ + + + R GY I+ Sbjct: 188 QTNVVETHISRLRAKVDKPYEVELIKTVRGAGYRIE 223 >gi|289423284|ref|ZP_06425094.1| two-component response regulator [Peptostreptococcus anaerobius 653-L] gi|289156315|gb|EFD04970.1| two-component response regulator [Peptostreptococcus anaerobius 653-L] Length = 224 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 77/157 (49%), Gaps = 2/157 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + +R S +P+I ++ + + L F++G D+ + KP + AR+ ++RR Sbjct: 60 EYLKWLREFSSIPVIMLTVKNADEYVLKGFENGADEYITKPFSLPILKARIDNLFRRKDT 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +NN + + ++ E L R+E +LE L+ N+ + + +I +++G Sbjct: 120 NNNEIVFHELSLNLTSMTAKLNNENLELNRQEFAVLELLLENKNINIIREKIIDSVWGYD 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V +N + I +LR KL++ + + + R LGY Sbjct: 180 LYEVNDNTLTVTIKRLRNKLKDYGKY--IKTVRGLGY 214 >gi|238755886|ref|ZP_04617215.1| KDP operon transcriptional regulatory protein kdpE [Yersinia ruckeri ATCC 29473] gi|238705907|gb|EEP98295.1| KDP operon transcriptional regulatory protein kdpE [Yersinia ruckeri ATCC 29473] Length = 226 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/158 (31%), Positives = 73/158 (46%), Gaps = 14/158 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R S +P+I +S S + + D+G DD ++KP E+LARV RR + Sbjct: 61 RDLRQWSAIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRHGAA-- 118 Query: 125 RAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + PI FSD R + GE L E R+L L+AN GK + + Q+ + ++ Sbjct: 119 -GQENPIVSFSDVSVDLINRQVKRAGEELHLTPIEFRLLTALLANAGKVITQRQLLNQVW 177 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 G VE N ++ LR KL DP K L Sbjct: 178 G--PNYVEHN---HYLRIYMGHLRQKLEDDPTRPKHLL 210 >gi|170693452|ref|ZP_02884611.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170141607|gb|EDT09776.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 220 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 LDVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQ 119 Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S++ G + + + G L RE +LE L+A G ++K+Q+ +Y Sbjct: 120 SGRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + E + N VE +I LRK KLG + + + R LGY I Sbjct: 180 G-WGEEIGSNTVEVYIHALRK----KLGAELIRNVRGLGYMI 216 >gi|164685948|ref|ZP_01947601.2| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat Q177'] gi|165924183|ref|ZP_02220015.1| transcriptional regulatory protein [Coxiella burnetii RSA 334] gi|164601469|gb|EAX31777.2| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat Q177'] gi|165916370|gb|EDR34974.1| transcriptional regulatory protein [Coxiella burnetii RSA 334] Length = 223 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 17/226 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + DG A G +++ + + SS E I L L+ Sbjct: 4 LLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRSGLD 63 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR + P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 64 VLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR--- 120 Query: 122 SNNRAETGPIRVFSD-GRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIFS 175 S RA+ PI D DP F + RRE +L+ L+ N G+ +++ Q+ Sbjct: 121 SKERAK--PIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQ 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +YG + E ++ N +E HI LRK+ KL + + R +GY ++ Sbjct: 179 TLYG-WGENIDSNALEVHIHNLRKRFGAKL----IRTIRGVGYMVE 219 >gi|94972066|ref|YP_594106.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554117|gb|ABF44032.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 134 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 7/127 (5%) Query: 90 FFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 + D GVDD V KP RE++ARV A+ RR+ V A G +R+ G + GE L Sbjct: 2 YLDFGVDDYVVKPFSPREVVARVRALLRRVGVQEEIA-VGDLRIDLRGHSASLSGERLEL 60 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 + E +L L + G + ++ ++G D E VV+ HI+ LRKKL D Sbjct: 61 SKLEFDLLSALAQHPGMAWPRERLLERVWG-SDFPGTERVVDVHITGLRKKL-----GDT 114 Query: 210 VDSKRFL 216 D+ RF+ Sbjct: 115 SDTPRFI 121 >gi|83647683|ref|YP_436118.1| response regulator [Hahella chejuensis KCTC 2396] gi|83635726|gb|ABC31693.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 228 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/146 (22%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 61 LELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +++ R +R + +P++ ++ + + ++ ++G DD + KP E++AR+ A+ RR Sbjct: 60 IDILRKVRQQQEWPIPVLFLTQREAEEDIIEALEAGADDYMVKPARPGELIARLKALSRR 119 Query: 119 LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + AE GP + R ++ GE L ++ + +L N+G+ +++ + Sbjct: 120 NRTEESDAEEASYGPFSINHKKRTIQLNGEPLTLTDKDFDLTTFLFENKGRLLSRKYLLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 ++G+ + + V++H+S+LR+KL Sbjct: 180 RVWGVSSD-INTRTVDTHMSRLRRKL 204 >gi|325300034|ref|YP_004259951.1| two component transcriptional regulator, winged helix family [Bacteroides salanitronis DSM 18170] gi|324319587|gb|ADY37478.1| two component transcriptional regulator, winged helix family [Bacteroides salanitronis DSM 18170] Length = 228 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 80/149 (53%), Gaps = 12/149 (8%) Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++ R+++A+ +P+I I+ + T+ F+ G DD ++KP RE++ RV A+ RR Sbjct: 63 KMARMLKANKDTVNIPIIFITAKDTENDTITGFNLGADDYISKPFSLREVIMRVKAVLRR 122 Query: 119 LKVSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + R E+ ++ + + ++GE L ++E IL L+ N G+ ++ I Sbjct: 123 -TANLQRKESEELQYKGLVINVPQKKVTIEGEEISLTKKEFEILSLLLQNAGRVFSREDI 181 Query: 174 FSAIYGLFDEA-VEENVVESHISKLRKKL 201 S ++ DE V + ++ +I++LRKK+ Sbjct: 182 LSKVWN--DEVYVLDRTIDVNITRLRKKI 208 >gi|319942060|ref|ZP_08016379.1| winged helix family Two component transcriptional regulator [Sutterella wadsworthensis 3_1_45B] gi|319804444|gb|EFW01322.1| winged helix family Two component transcriptional regulator [Sutterella wadsworthensis 3_1_45B] Length = 227 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 6/153 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127 A + +P+I ++ +L+ L+ D+G DD + KP H E+LAR+ A+ RR + N Sbjct: 72 AKNDIPVIILTARDALEDRLNGLDAGADDYLVKPFHMSELLARMRAVMRRRNGAAANVLS 131 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + + + E G+ + L +RE +L L+A G +++ + IY + +E + Sbjct: 132 NGDLSLSEAAKTVERAGQTYTLTKREYALLSALLARPGAILSRRALEDRIYAVGEEP-DS 190 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N VE I LRK KLG D V + R LG+ + Sbjct: 191 NAVEYLIHALRK----KLGADAVKNVRGLGWMV 219 >gi|298250454|ref|ZP_06974258.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297548458|gb|EFH82325.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 228 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 9/139 (6%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R + P+I ++ L+ ++ DSG DD + KP E+LAR+ A+ RR Sbjct: 68 RKGRETPVILLTAKGDLEDKVEGLDSGADDYLPKPFQAEELLARLRALGRR---KGQFLP 124 Query: 128 TGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 G +R +P +G F L +E ++LE L+ N+G ++ I ++G +D Sbjct: 125 DGLLRFEDIELNPHTLNLYCKGNSFHLTLKESQLLELLIRNKGTLLSPNLIIEKLWG-YD 183 Query: 183 EAVEENVVESHISKLRKKL 201 E++ V H++ LRKKL Sbjct: 184 TEAEDSHVRVHVAFLRKKL 202 >gi|290352241|dbj|BAI78831.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D GVDD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGVDDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|229011362|ref|ZP_04168553.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228749879|gb|EEL99713.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 223 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I ++ S L + G DD + KP + +LARV I RR + Sbjct: 63 ICREIRKTSDVPIIMVTSRDSDVDELISMNLGADDFITKPYNTEILLARVTNILRR---T 119 Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +T I ++ D Q + L + E +IL L+ NRG V + + Sbjct: 120 SGDLKTNHILIYRDFNLNLSNATVTYQDKSVELTKNEVKILSCLINNRGYIVKRDSLIET 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 ++ D V+++ + +I++LRKKL ++G +P+ ++R LGY Sbjct: 180 LWK-SDYFVDDSTLTVNINRLRKKLE-EIGIENPIATRRSLGY 220 >gi|226310515|ref|YP_002770409.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093463|dbj|BAH41905.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 261 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 10/167 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E R IR P+I ++ + + G DD V KP REI+AR+ AI RRL+ Sbjct: 92 FEACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQ 151 Query: 121 VSNNRAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + +R F D R+ V GE +E +L L+ + G ++ Q Sbjct: 152 PKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQ 211 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + ++G FD + ++ HI K+R++L +KL +D + + +GY Sbjct: 212 LLEQVWG-FDYFGDVRTIDVHIKKIRQRL-DKLPYDCIQTVWGIGYK 256 >gi|153808092|ref|ZP_01960760.1| hypothetical protein BACCAC_02378 [Bacteroides caccae ATCC 43185] gi|149128995|gb|EDM20211.1| hypothetical protein BACCAC_02378 [Bacteroides caccae ATCC 43185] Length = 229 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 78/152 (51%), Gaps = 10/152 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G K+ + + + ++VP+I I+ + T+ F+ G DD ++KP RE++ARV A+ Sbjct: 61 GFKMANMLKKDKKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVL 120 Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 RR + E P R+ + + GE L ++E IL L+ N+G+ + Sbjct: 121 RR--TATAETERAPERLVYQSLVIDITKKKVSIDGEEVQLTKKEFEILLLLVQNKGRVFS 178 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + I + I+ + V + ++ +I++LRKK+ Sbjct: 179 REDILTRIWS-NEVYVLDRTIDVNITRLRKKI 209 >gi|332306808|ref|YP_004434659.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174137|gb|AEE23391.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 244 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 10/173 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G L++ R +RA QVP++ ++ + + G DD + KP + RE+ AR+ AI Sbjct: 62 GMSGLDVLRSVRAKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAII 121 Query: 117 RRLKVS-NNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RR + S N +T P I + + R V PL E L LM G+ Sbjct: 122 RRTENSLGNGLDTKPIVHTQLHGIELDTGTRTALVNNTPLPLTSAEFNALSLLMTRAGQT 181 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++K + + EA + ++ HIS++R+KL ++ D + S R +GY + Sbjct: 182 ISKQDMTQEVLNRPLEAYDR-AMDVHISRIRQKLSSEGINDVIKSIRGVGYQM 233 >gi|294140509|ref|YP_003556487.1| transcriptional regulatory protein PhoP [Shewanella violacea DSS12] gi|293326978|dbj|BAJ01709.1| transcriptional regulatory protein PhoP [Shewanella violacea DSS12] Length = 224 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 5/152 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 + P++ ++ + Q ++ ++G DD + KP E++AR+ A+ RR + +G Sbjct: 72 KAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSSGFVRPKINSGA 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + + E ILEYLM + + VAK ++ IYG D+ + N + Sbjct: 132 LELDLAAKQVSMNSVPMEITAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDPNTI 189 Query: 191 ESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 E +S+LRKKL K G D P+ + R GY D Sbjct: 190 EVMVSRLRKKL-TKEGLDNPIATIRGQGYKFD 220 >gi|257790147|ref|YP_003180753.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|317489597|ref|ZP_07948102.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|257474044|gb|ACV54364.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|316911329|gb|EFV32933.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 237 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 79/152 (51%), Gaps = 2/152 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126 R VP++ ++ ++ + DSG DD + KP E+LA + A+ RR +V + Sbjct: 68 RKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQGEVLFEKL 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + + D + L +E + + LMAN G+ V+K + + ++G+ + + E Sbjct: 128 AAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVWGV-ESSAE 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +N VE+++S LRKK++ +++ R GY Sbjct: 187 DNNVEAYVSFLRKKMKFLGSTARIETLRRAGY 218 >gi|182679189|ref|YP_001833335.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635072|gb|ACB95846.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 235 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 18/160 (11%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 +A +P++ ++ ++ D+G DD V KP H E+LAR+ A+ L+ S RA Sbjct: 68 KAERSMPVLILTARDRWSDKVEGIDAGADDYVAKPFHMEEVLARLRAL---LRRSAGRAS 124 Query: 128 ----TGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 GP+++ D R V E P L E R+L Y+M + G+ +++++I +Y Sbjct: 125 DELVCGPVKL--DTRSGAVTVEDVPVKLTSHEYRLLAYMMLHAGRVISRSEIIEHLYDQD 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + N +E + +LRK KLGFD +++ R LGY + Sbjct: 183 FDR--DSNTIEVFVGRLRK----KLGFDIIETLRGLGYRV 216 >gi|188990240|ref|YP_001902250.1| two-component system response regulator [Xanthomonas campestris pv. campestris str. B100] gi|167732000|emb|CAP50188.1| two-component system response regulator [Xanthomonas campestris pv. campestris] Length = 290 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ ++ ++ + D G DD + KP RE AR + RR + + Sbjct: 130 TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNRGQASEVVQLGAF 189 Query: 133 VFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 VF + + G LP RE R+LE L+ G+ V K +I + ++G FD+ N +E Sbjct: 190 VFDNAAHTVSLDGVAIELPNREYRLLEILIGRLGQVVGKDEIGNGLFG-FDDDAGPNAIE 248 Query: 192 SHISKLRKKL 201 ++ +LR+KL Sbjct: 249 LYVGRLRRKL 258 >gi|330897348|gb|EGH28767.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 227 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 3/167 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +++ + +R+ S VP++ I+ L D G DD + KP RE++ARV AI Sbjct: 63 GRDGMDICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR S G ++V G L E R+L + G+ ++ + Sbjct: 123 RRSSSSETHTPKG-LQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +Y V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 182 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 227 >gi|291547167|emb|CBL20275.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 223 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 6/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR SQVP+I IS + DD + KP ++A++ AI RR N Sbjct: 68 IRKVSQVPVIFISSAADNMNMVMAMSRVADDFIAKPFDMDVLVAKIQAILRRTYSFGNPG 127 Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 G + S GE L R E RILE L + GK V++ I + ++ D Sbjct: 128 NVLEHKGAVLNLSRAT-LTWNGEETELTRNELRILELLFSQAGKPVSRDAIMTKLWE-SD 185 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V++N + +I++LRKKL D + +++ LGY + Sbjct: 186 SFVDDNTLTVNITRLRKKLEAAGLVDFIITRKGLGYMV 223 >gi|261417826|ref|YP_003251508.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319767364|ref|YP_004132865.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261374283|gb|ACX77026.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317112230|gb|ADU94722.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 228 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 89/166 (53%), Gaps = 21/166 (12%) Query: 65 RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R IRAHS VP++ +S D+P+ + G DD + KP H ++A++ A+ RR+ Sbjct: 64 RQIRAHSNVPILFLSSRDHPT--DMVMSMQLGADDYIQKPFHFDVLIAKIQALLRRVYNY 121 Query: 123 NNRAETGPIRVFS------DGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GP+++ + D V E L + E IL++L+A + + VA+T++ Sbjct: 122 N----AGPVQLQTWCGATVDYEKSTVSNEHGTVELTKNELLILKHLLAKKNQIVARTELI 177 Query: 175 SAIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 ++ DE V +N + ++++LRKKL ++LG +++K GY Sbjct: 178 KRLWE--DERFVSDNTLTVNVNRLRKKL-DELGLGRFIETKVGQGY 220 >gi|228994185|ref|ZP_04154085.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] gi|229000254|ref|ZP_04159823.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|229007777|ref|ZP_04165365.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|229087951|ref|ZP_04220061.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] gi|228695364|gb|EEL48239.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] gi|228753485|gb|EEM02935.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|228759586|gb|EEM08563.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|228765637|gb|EEM14291.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] Length = 247 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 20/217 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ + DG +E ++ + E + ++ G+ LE+ R IR Sbjct: 35 LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 83 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122 S++P+I ++ S + + G DD V KP RE+LARV A RR K Sbjct: 84 SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGSAEKEE 143 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N GPI + + + E L RE +L YL + G+ + + + ++G +D Sbjct: 144 NTEMVIGPIVINPNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 202 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 + V+ + +LR+K+ + + ++R +GY Sbjct: 203 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGY 239 >gi|158340539|ref|YP_001521533.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310780|gb|ABW32394.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 248 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 77/148 (52%), Gaps = 8/148 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 +R S+VP+I ++ ++ + + G DD + KP +E+ +RV I RR LK N Sbjct: 78 VRKTSRVPIIMLTALSEVKDRITGLEMGADDYMVKPFSPKELESRVRCILRRLSPLKAFN 137 Query: 124 NRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ E G +++ +D R E L +E +L L + G+ V++ ++ ++ Sbjct: 138 HQMTGVIEIGSVQIDTDKRQVFRDHERVFLTYKEFNLLALLASRPGETVSRQELLQKVWE 197 Query: 180 LF-DEAVEENVVESHISKLRKKLRNKLG 206 D V+ V+ H+S+LR+KL+ KLG Sbjct: 198 YNKDSIVDTRTVDVHMSRLRQKLKEKLG 225 >gi|257790446|ref|YP_003181052.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|257474343|gb|ACV54663.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] Length = 243 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 99/243 (40%), Gaps = 32/243 (13%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 V+I+D A + + +G + + F+ E L S D+ + L G GE Sbjct: 7 IVIIEDDADINEVVAVHLRRNGFACTQAFSGSEGRLLLSGSEPFDLVITDLMLPGMAGED 66 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 V+ R++RA +P+I +S + + G DD + KP E+LARV R Sbjct: 67 VV---RLVRARGDMPVIVMSARTTAADKVALLKLGADDYLTKPFDLDELLARVQVQLRHA 123 Query: 120 KVSNNRAETGPIRVFSDGRDPE----------------------VQGEVFPLPRRERRIL 157 V A P SD R PE VQGE L R E IL Sbjct: 124 DVRRASASGAP----SDERLPEPAAAAAMRYKDWTLDVDARTLSVQGEPVRLTRLEFNIL 179 Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217 E L+ K K ++F + + AVEE + H+S +R KLR +++ +G Sbjct: 180 EALVRRPRKVFTKRELFEIAWN-EESAVEEKAINVHVSNIRSKLRAAHSAGEIETVWGIG 238 Query: 218 YSI 220 + + Sbjct: 239 FKL 241 >gi|256422749|ref|YP_003123402.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256037657|gb|ACU61201.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 266 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 87/170 (51%), Gaps = 10/170 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +V E+ R R ++ +P+I ++ + + F+ G DD + KP RE++AR+ Sbjct: 98 GYEVCEVIR--RKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFL 155 Query: 117 RRLKV---SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +R NN+ + G + + + ++ G+ L +E ++LE+L ++GK ++K Sbjct: 156 KRAGSEVQENNQYKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKL 215 Query: 172 QIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++ + FD NV+E +++ LRKK+ + +K +GY + Sbjct: 216 VIAEKVWDIDFDTGT--NVIEVYMNFLRKKIDKDFDNKLLHTKTGMGYYL 263 >gi|197301618|ref|ZP_03166691.1| hypothetical protein RUMLAC_00345 [Ruminococcus lactaris ATCC 29176] gi|197299348|gb|EDY33875.1| hypothetical protein RUMLAC_00345 [Ruminococcus lactaris ATCC 29176] Length = 226 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 15/161 (9%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 + ++P I ++ Q L FD G +D V KP + +L R+ +RR NR E Sbjct: 70 NRKIPAIFLTARDEEQEMLKAFDLGAEDYVVKPFSMKVLLKRIEVAFRR-----NRGEDA 124 Query: 130 PIRVFSD-------GRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ R V GE L +E ++LEYLM N+G+ + K I ++G+ Sbjct: 125 GEQILKCRNLNLYPQRKKAVSGENEISLTAKEYQLLEYLMKNQGQVLTKENILEHVWGID 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221 + V +N V + +LRKK+ G P F LGY ++ Sbjct: 185 GQYVVDNSVSVLVGRLRKKIEAA-GERPYIQNVFGLGYRME 224 >gi|167464300|ref|ZP_02329389.1| two component transcriptional regulator, winged helix family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 227 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 6/147 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----- 117 + R IR S +P+I ++ TL F+ G DD V KP +LAR + Sbjct: 64 VCRRIRKTSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLESRYAI 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + N + I V R +V G+ L E IL YLM N+G + + Q+ + I Sbjct: 124 EEETNGNSLSSCGIHVDFPSRTVKVDGKDINLTYTEFEILTYLMHNQGIVITREQLITKI 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 +G ++ + ++ V SHI LR KL +K Sbjct: 184 WG-YEFSGDDRTVNSHIRNLRTKLGDK 209 >gi|154496539|ref|ZP_02035235.1| hypothetical protein BACCAP_00831 [Bacteroides capillosus ATCC 29799] gi|150274172|gb|EDN01263.1| hypothetical protein BACCAP_00831 [Bacteroides capillosus ATCC 29799] Length = 228 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 3/126 (2%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRR 152 G+DD + KPI E++ R+ A+ RR K++ +R E G + +D + GE PL R Sbjct: 100 GIDDYMVKPIDLDELMLRIGALLRRAKIAASRKIEVGSFVMDADEHTACLNGEEIPLTAR 159 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E +L L++ K ++Q+ +G+ D A V+ +++KLR KL F+ V + Sbjct: 160 EFSLLYKLLSYPKKTFTRSQLMDEFWGV-DTASGPRTVDVYMTKLRSKLAACDSFEIV-T 217 Query: 213 KRFLGY 218 LGY Sbjct: 218 VHGLGY 223 >gi|89896744|ref|YP_520231.1| hypothetical protein DSY3998 [Desulfitobacterium hafniense Y51] gi|89336192|dbj|BAE85787.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 6/145 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S P+I ++ L+ L + G DD + KP RE++AR+ A+ RR + Sbjct: 61 EICREIRKISATPVIMLTAKVELEDRLQGLNLGADDYIGKPFSPREVVARIKAVLRRTHI 120 Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +++ + + + + +Q EV L E +IL L G+ ++ Q+ Sbjct: 121 ETSLLADSITYDNGLTIDNAQHEVRLQEEVISLTPTEFKILGALAKYPGRVYSRGQLVQI 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 + G D +E V+++HI KLR+KL Sbjct: 181 VQG-HDFGGDERVIDAHIKKLRQKL 204 >gi|325570561|ref|ZP_08146287.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|325156407|gb|EGC68587.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 222 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 26/211 (12%) Query: 3 VLIDD----RALVK-----DGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAF 52 +++DD RALVK +GY+ DG +LE + F D+ ++ Sbjct: 5 LIVDDDTHMRALVKTYAEIEGYLCFEASDGKETLEKLTNHSF----------DLILLDVM 54 Query: 53 LIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 + GK G + L IR P+I I+ L F+ G DD + KP +E++AR Sbjct: 55 MPGKDGFQTLSE---IRGSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMAR 111 Query: 112 VAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + A+ +R + + G + V ++G PL +E +L YL N +++ Sbjct: 112 IKAVLKRSSQFQFEKIVYGDLEVNVFSHTVTIKGNPLPLTPKEFDLLVYLTKNNHIALSR 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 I ++G FD + V++HI LR++L Sbjct: 172 ESILEGVWG-FDYFGDTRTVDTHIKSLRERL 201 >gi|296535704|ref|ZP_06897875.1| phosphate regulon transcriptional regulatory protein PhoB [Roseomonas cervicalis ATCC 49957] gi|296263965|gb|EFH10419.1| phosphate regulon transcriptional regulatory protein PhoB [Roseomonas cervicalis ATCC 49957] Length = 238 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 9/154 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP-- 130 +P+I ++ Q + D+G DD + KP ++AR+ A+ RR S A G Sbjct: 85 LPIIMVTARTEDQDAVRALDTGADDYIAKPFVMDALMARIRALLRR---SGGVATKGTLA 141 Query: 131 ---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 + + D G L E R+LE+ + + G+ ++ Q+ A++G D VE Sbjct: 142 WHDVTMDQDAHRVSRNGRALHLGPTEYRLLEFFLQHPGRVFSREQLLDAVWG-RDIHVEP 200 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V+ HI +LRK + + D + + R GY++D Sbjct: 201 RTVDVHIRRLRKAVNGEGEVDIIRTVRSAGYALD 234 >gi|295101234|emb|CBK98779.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 232 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/200 (23%), Positives = 93/200 (46%), Gaps = 21/200 (10%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+GY +DG LE FN L + D+ ++ + LE+ R IR Sbjct: 23 LTKEGYQVTTANDGEEGLEKFNQL----------KPDMVLLDVMMPRMDG--LEVCRRIR 70 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 P++ ++ + + G DD + KP +E++AR+ A+ RR V+ ++ E+ Sbjct: 71 KLGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRRCTVTTSQTES 130 Query: 129 GP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +R+ + + V+G+V P +E +L L ++ + + Q+ ++G F Sbjct: 131 SEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLLDEVWG-F 189 Query: 182 DEAVEENVVESHISKLRKKL 201 + + ++ H+ +LR+KL Sbjct: 190 EYYGDSRTIDVHVKRLREKL 209 >gi|270262846|ref|ZP_06191117.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043530|gb|EFA16623.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 224 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 84/162 (51%), Gaps = 5/162 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ + +P++ ++ + + + G DD + KP E+ AR+ A+ RR + V Sbjct: 63 LARLRKRGQDLPVLLLTARTDVADRVKGLNLGADDYLTKPFELDELEARIRALLRRSVGV 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + +G ++ + L RE +L L+ RG+ VAK Q+F ++ L Sbjct: 123 TQQALQYGALTYHDEGYF-QLDDKPLSLTPRELAVLTALIHRRGRPVAKQQLFEQVFTLS 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 DEA E+ +E ++ +LRKKL+ + + R LGYS++ + Sbjct: 182 DEANPES-IELYVHRLRKKLQGS--NVAIVTLRGLGYSLELS 220 >gi|268680656|ref|YP_003305087.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946] gi|268618687|gb|ACZ13052.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946] Length = 224 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 87/179 (48%), Gaps = 25/179 (13%) Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 +G+ V + R + H+ P+I +S ++ + G DD + KP E+LAR+ Sbjct: 58 QGDVVCQKLREQKLHT--PIIVLSAKSTISDKVGLLHLGADDYLTKPFSFEELLARIHVQ 115 Query: 116 YRR-------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG--- 165 R+ LKV++ E P+ + EV L +E +LEYLM ++G Sbjct: 116 LRKQNDKEPLLKVAD--LELNPV-----TKSVTRSKEVISLTAKEYMLLEYLMRHKGAII 168 Query: 166 -KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +++ + Q+FS+ ++++ N+V ++ +LR K+ + + R LGY+++ N Sbjct: 169 EEKMLEEQLFSS-----EQSINSNMVSVYMYRLRSKIDKNFELKLIKTHRNLGYTLNEN 222 >gi|229107947|ref|ZP_04237575.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15] gi|228675509|gb|EEL30725.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15] Length = 237 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 15/162 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 63 IEVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V SNN A+ F + E L +E +L++ +N G+ KTQ Sbjct: 123 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213 +F ++ D +E +N V HI KLRKK+ DP + K Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218 >gi|257066862|ref|YP_003153118.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] gi|256798742|gb|ACV29397.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] Length = 219 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 4/153 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NR 125 IR S +P+I ++ + D G DD + KP E+++RV A+ RR K + + Sbjct: 65 IREFSDIPIIMLTARTDEFDKVMGLDLGADDYITKPFSILELISRVKAVLRRSKKKDTDH 124 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 +R+ R +V G L +E +L M+N G + + ++G +D Sbjct: 125 ISYKEVRLNMKKRSVKVDGVKIDLTYKEFEMLLLFMSNIGNVITRDDFLLKVWG-YDYEG 183 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E V+ HI+ LR KL+N + +++ R LGY Sbjct: 184 ETRTVDVHIASLRAKLKNAGKY--IETVRNLGY 214 >gi|167750125|ref|ZP_02422252.1| hypothetical protein EUBSIR_01094 [Eubacterium siraeum DSM 15702] gi|167656868|gb|EDS00998.1| hypothetical protein EUBSIR_01094 [Eubacterium siraeum DSM 15702] gi|291556575|emb|CBL33692.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium siraeum V10Sc8a] Length = 244 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 17/173 (9%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R +R S + +I +S + G DD V KP E++ARV A+YRR+ Sbjct: 64 ELCRWLRQKSDTMGIIMLSAKSQEVDKIRCLTQGADDYVTKPFSPSELVARVDAVYRRVS 123 Query: 121 VSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 +S R +GP + + R G + + E ++LEY M N G + + Sbjct: 124 LSVARPPEDEGRTLISGPFSINTKSRIFTKNGTGIEITQVEYQLLEYFMENSGSALDRRS 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK---RFLGYSIDW 222 I + I+G D ++ +V+ +I +LR K+ DP + + GY W Sbjct: 184 ILTHIWG-NDYYGDDKIVDVNIRRLRMKIEE----DPSNPRYITTIWGYGYKW 231 >gi|160946207|ref|ZP_02093418.1| hypothetical protein PEPMIC_00169 [Parvimonas micra ATCC 33270] gi|158447730|gb|EDP24725.1| hypothetical protein PEPMIC_00169 [Parvimonas micra ATCC 33270] Length = 218 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S++P++ ++ + + ++ F S D + KP + R+ ++ +R Sbjct: 60 LEVLKEIRKKSKLPVLMLTAFNDEEYKINAFSSLADGYMEKPFSLPVLKVRIDSLIKRHY 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E V + GE + +E IL+YL+ N G + + QI ++ Sbjct: 120 SGQEKFEYKDAEVNFTSYTAKYNGEDVDINAKELEILKYLLENEGHALTRAQIIDNVWKE 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRK KLG D + + R +GY ++ Sbjct: 180 TDEIPFDRVIDVYIKELRK----KLGLDCIVTIRNVGYKLE 216 >gi|187927671|ref|YP_001898158.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12J] gi|309780716|ref|ZP_07675457.1| transcriptional regulatory protein QseB [Ralstonia sp. 5_7_47FAA] gi|187724561|gb|ACD25726.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|308920398|gb|EFP66054.1| transcriptional regulatory protein QseB [Ralstonia sp. 5_7_47FAA] Length = 224 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 100/227 (44%), Gaps = 21/227 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D L+ DG A G ++ E W + V+AI + + + V Sbjct: 3 ILLVEDDPLLGDGIRAGLQQQGFQVDWVRDGE-AAWRELRTDAYVAAILDLGLPRMDGVD 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 L ++ A VP++ ++ ++ + D G DD + KPI E+ AR+ A+ RR Sbjct: 62 VLRKVRGAGIAVPILVLTARDAIPDRVRGLDLGADDYIVKPIDLHELSARLRALVRRAHG 121 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 L+ E VF +GR L RE +L LM N G+ +++ Q+ Sbjct: 122 HPTEQLRARGIVLEPASRTVFCNGR-------AVALSTREFDLLHALMLNAGRVLSREQL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y + + V N VE HI LR KLG D + + R +GY + Sbjct: 175 EQCLYP-WGQEVGSNSVEVHIHHLRV----KLGSDLIVTVRGVGYML 216 >gi|126697938|ref|YP_001086835.1| two-component system response regulator [Clostridium difficile 630] gi|115249375|emb|CAJ67190.1| Two-component response regulator, Tn916-like,CTn1-Orf13 [Clostridium difficile] Length = 230 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + VP++ ++ S + G DD + KP E +ARV ++ RR V NN Sbjct: 67 IRKLNNVPVLMLTAKDSEIDKVSGLRLGADDYLTKPFLMAEFVARVQSLIRRFTVFNNHT 126 Query: 127 ETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E F R + L RE +L +L +N+G+ K QI++ ++ Sbjct: 127 EENITLKFKGLQIDVTLRTVLLNDNQIYLTAREFDLLYFLASNQGRVFTKEQIYTHVWN- 185 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 + + ++ + S +SKLRKK++N KL D + + +GY Sbjct: 186 NEYSYDDRNIMSFVSKLRKKIKNEKLDIDYIQTIHGIGY 224 >gi|110638548|ref|YP_678757.1| two-component response regulator [Cytophaga hutchinsonii ATCC 33406] gi|110281229|gb|ABG59415.1| two-component response regulator [Cytophaga hutchinsonii ATCC 33406] Length = 225 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 2/160 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + R ++ +I +S+ S+ + F ++G DD ++ P + E+ AR+ A+ RR K + Sbjct: 63 LTDLYRKSAETGIIILSETLSIADKVQFLNAGADDCLSAPYNTEELKARILAVIRRKKFN 122 Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + V + V + L R E + +L+ NR V++T+I ++G Sbjct: 123 TGSSVHIANVVVDLAAQSICVWDKTVLLTRTEYDLFLFLIMNRSSTVSQTKIADYLWGDT 182 Query: 182 DEAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E E N++ +HI LRKKL+ + + +GY++ Sbjct: 183 AEDKEASNLLIAHIKNLRKKLKQAKAELEIKNVYGIGYTL 222 >gi|307709571|ref|ZP_07646025.1| response regulator [Streptococcus mitis SK564] gi|307619702|gb|EFN98824.1| response regulator [Streptococcus mitis SK564] Length = 225 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP + +LA++ + RR Sbjct: 67 IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKIQGLLRRSYEFGRDE 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + + D QG+V L + E +IL L + G VA+ + ++ D Sbjct: 127 SLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +GF +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLVGF--IETKKGIGYGL 222 >gi|307701723|ref|ZP_07638737.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris FB024-16] gi|307612981|gb|EFN92236.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris FB024-16] Length = 229 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 10/227 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59 M ++D ++D + G G G + + R ++ ++ L G G + Sbjct: 1 MIYFVEDDRNIRDLVVYTLGSTGFEAFGCEDDKAFRAEMAKTRPELVLLDIMLPGTDGIQ 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L + R+ + +P+I ++ + + D G DD V KP E+++RV A+ RR Sbjct: 61 ILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLRRS 120 Query: 120 KVSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S + G I + V GE L +E ++LE LM G ++ Q+ Sbjct: 121 SRSTQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRDQL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +I+G + E V+ HI LRKKL + V + R +GY + Sbjct: 181 LDSIWG-YSFHGETRTVDVHIRTLRKKLGEAAKY--VKTVRGVGYKV 224 >gi|253572356|ref|ZP_04849759.1| two-component system response regulator [Bacteroides sp. 1_1_6] gi|251838131|gb|EES66219.1| two-component system response regulator [Bacteroides sp. 1_1_6] Length = 229 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 12/153 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G K+ + + + ++VP+I I+ + T+ F+ G DD ++KP RE++ARV A+ Sbjct: 61 GFKMANMLKKDKKTARVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVL 120 Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 RR + AE P R+ + + E L ++E IL L+ N+G+ + Sbjct: 121 RR--TATMEAEKAPERLTYQSLVIDITKKKVSIDDEEVQLTKKEFEILLLLVQNKGRVFS 178 Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201 + I + I+ DE V + ++ +I++LRKK+ Sbjct: 179 REDILARIWS--DEVYVLDRTIDVNITRLRKKI 209 >gi|228906049|ref|ZP_04069939.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL 200] gi|228853596|gb|EEM98363.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL 200] Length = 237 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 15/162 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 63 IEVCKKLRDKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V SNN A+ F + E L +E +L++ +N G+ KTQ Sbjct: 123 VLGSNNTAQEKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213 +F ++ D +E +N V HI KLRKK+ DP + K Sbjct: 183 LFQNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218 >gi|218132654|ref|ZP_03461458.1| hypothetical protein BACPEC_00513 [Bacteroides pectinophilus ATCC 43243] gi|217992380|gb|EEC58383.1| hypothetical protein BACPEC_00513 [Bacteroides pectinophilus ATCC 43243] Length = 230 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 14/157 (8%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 + P++ ++ ++ + D+G DD + KP +E+LAR+ + RR A P Sbjct: 72 KTPVLLLTAKSEVEDRVLGLDTGADDYLTKPFAMKELLARIRVMTRR------TASYAPD 125 Query: 132 RVFSDGRD-------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + DG E G L +E ++LE LM N+G+ V+ Q ++G ++ Sbjct: 126 TLDVDGMKLNRGNCMLEYNGGEVQLVNKEYQMLEMLMRNKGRLVSSEQFIEHVWG-YETD 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVV +IS LR+KL + + R LGY ++ Sbjct: 185 INVNVVWVNISNLRRKLTQINAPVEIKAVRGLGYRLE 221 >gi|206972723|ref|ZP_03233660.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228950826|ref|ZP_04112951.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068029|ref|ZP_04201338.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185] gi|229077630|ref|ZP_04210261.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2] gi|229176865|ref|ZP_04304262.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W] gi|206732356|gb|EDZ49541.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228606613|gb|EEK64037.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W] gi|228705684|gb|EEL58039.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2] gi|228715096|gb|EEL66962.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185] gi|228808856|gb|EEM55350.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 237 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 15/162 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 63 IEVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V SNN A+ F + E L +E +L++ +N G+ KTQ Sbjct: 123 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213 +F ++ D +E +N V HI KLRKK+ DP + K Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218 >gi|167757753|ref|ZP_02429880.1| hypothetical protein CLOSCI_00084 [Clostridium scindens ATCC 35704] gi|167664635|gb|EDS08765.1| hypothetical protein CLOSCI_00084 [Clostridium scindens ATCC 35704] Length = 221 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 5/140 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 +I R +P+I ++ L +D G DD + KP + +LA+V A+ RR S N Sbjct: 65 KIAREMYNIPIIFLTAKEGEDDKLKGYDIGADDYMTKPFSPKVLLAKVNALLRR-SSSEN 123 Query: 125 RAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ET G + + V G+ L +E +L + M N+ + ++ Q+ + I+G + Sbjct: 124 TPETLTVGNLTLIPTSHSVMVAGDDVDLTYKEFELLRFFMQNKNQVFSREQLLNRIWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKL 201 D V++HI LR+KL Sbjct: 183 DFEGNTRTVDTHIKTLRQKL 202 >gi|75908656|ref|YP_322952.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75702381|gb|ABA22057.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 222 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 13/213 (6%) Query: 16 IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQ 72 IA F + G+ +GF + + ++ S + ++ G+ L++ +R + Sbjct: 13 IAAFIEKGLRSQGFTTAVATDAYSATNMALSSGFDLMILDLGLPGKDGLDVLEELRGQGE 72 Query: 73 -VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---- 127 VP+I ++ +Q + F++G DD + KP E+L RV A R+ S E Sbjct: 73 NVPVIILTARDDIQDKVAGFEAGADDYLTKPFRFEELLVRVKARLRQSGGSQVMEEMVIK 132 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 +G I + R ++ + LP RE + E + G+ +++ Q+ ++G +D Sbjct: 133 SGHIVLDLRSRKVKIGQDTIELPAREFTLAETFFRHPGQVLSREQLLDRVWG-YDYDPGS 191 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+V+ ++ LRKKL N L +++ R +GY + Sbjct: 192 NIVDVYVGYLRKKLGNDL----IETVRGMGYRL 220 >gi|317472204|ref|ZP_07931533.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316900293|gb|EFV22278.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 226 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 6/149 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G L+L IR P+I ++ S Q ++ +G DD + KP E+LAR++A Sbjct: 59 GMNGLDLCVSIRDFISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHL 118 Query: 117 RRLKVSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR + S+N+ ++ + +SD R ++G L +E I++ L +N G+ + + Sbjct: 119 RREQRSHNKTKSKFSEELVIDYSD-RSLYIRGNKIELSNKEFEIIQLLSSNAGQVFDREK 177 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I+ I+G+ D + V++ HI K+R K Sbjct: 178 IYECIWGI-DGNGDSVVIKEHIRKIRLKF 205 >gi|307942343|ref|ZP_07657694.1| two component transcriptional regulator [Roseibium sp. TrichSKD4] gi|307774629|gb|EFO33839.1| two component transcriptional regulator [Roseibium sp. TrichSKD4] Length = 220 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 4/152 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETG 129 + P+I ++ + + D G DD + KP E AR A+ RR S NR G Sbjct: 71 NATPVIVLTARSEVSDRVGVLDLGADDYIVKPFDFSEFEARCRAVLRRKGGASGNRISRG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 ++ + +V GE L RE R+ E + G+ +K+++ ++ +DE V EN Sbjct: 131 DLKFDTLAGTLQVAGEQIQLRNRELRLFEIFINAPGQIFSKSKLVDRLFS-YDEDVSENA 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E ++ +LRK L + + R LGY ++ Sbjct: 190 IEVYVGRLRKHLSASAA--NIVTVRGLGYKLE 219 >gi|289524120|ref|ZP_06440974.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502776|gb|EFD23940.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 228 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 82/161 (50%), Gaps = 2/161 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I + +P++ ++ ++ + + G DD + KP E+LARV A+ RR + Sbjct: 64 LEQIRKGGINIPVLMLTAKGDVEDKVKGLNLGADDYLAKPFSIDELLARVRALLRRSEGR 123 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-L 180 ++ + +R+ + R GE L ++E ILE+L+ N+ + V++ + ++G Sbjct: 124 HSAILDAKGLRLDTVSRKVTKDGEPIDLTQKEFLILEFLLYNKNRVVSRFSLAEHVWGDA 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD N ++ HI LR+KL + + + R +GY I+ Sbjct: 184 FDPFTMSNFIDVHIKNLRRKLGDAGNDKIIQTVRSVGYMIE 224 >gi|225573645|ref|ZP_03782400.1| hypothetical protein RUMHYD_01839 [Blautia hydrogenotrophica DSM 10507] gi|225039013|gb|EEG49259.1| hypothetical protein RUMHYD_01839 [Blautia hydrogenotrophica DSM 10507] Length = 228 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 4/139 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SN 123 IR + +P+I IS + Q +D G DD + KP E+LAR+ + RR+ + S Sbjct: 67 IRENFLMPVIVISAKETTQNKIDLLRQGADDYITKPFDMEEVLARIESNLRRVGIWEKSK 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + + + +QG L +E +L LM K +K +F +++ + + Sbjct: 127 DILRCEDLLLDLERHTATLQGCELVLTAKEFALLRLLMEFPDKIFSKANLFQSVWNM-EY 185 Query: 184 AVEENVVESHISKLRKKLR 202 E+N + HIS LR KLR Sbjct: 186 ISEDNTLNVHISNLRSKLR 204 >gi|261408286|ref|YP_003244527.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284749|gb|ACX66720.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 239 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 7/147 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL IR H+ P+I IS + L G DD + KP + E++AR+ AI RR K Sbjct: 64 FELCTEIRKHTNAPIIFISARSTDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQK 123 Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N + G + + V+G+ +E +L + + Q++ Sbjct: 124 IMENELQQNTAYDYGYLSFHPESATLIVKGQPVDCTAKELELLHFFFKHPNHIFTTAQLY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++G D EE V HISKLRKK+ Sbjct: 184 ELVWG-NDVFGEEKTVTIHISKLRKKI 209 >gi|56965403|ref|YP_177135.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56911647|dbj|BAD66174.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 238 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 8/147 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL IR ++ P+I +S + L G DD + KP + E++AR+ AI RR K Sbjct: 64 FELCTEIRRNTDTPIIFVSSRATDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQK 123 Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + R+E P+ + + VQ + +E +L + N + Q++ Sbjct: 124 MY-ERSEKKPVYDYGYFAFYPESAILMVQNQTVECTAKELELLHFFCENPNRIFTTAQLY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++G D EE V HISKLRKKL Sbjct: 183 ERVWG-NDVFGEEKTVTIHISKLRKKL 208 >gi|311069979|ref|YP_003974902.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310870496|gb|ADP33971.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 237 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 9/167 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118 R IR S VP+I IS + + G DD + KP H +LA++ ++ RR Sbjct: 65 RQIRTISNVPIIFISARTDELNQVMAIEHGGDDYITKPFHLEVVLAKIKSVLRRTYGEYS 124 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + E G + ++ D + E + ++E ++L + K V + ++ A Sbjct: 125 PSISQESKVVEIGELYIYPDKYEAEWKNNRMSFSQKEFQLLSIFVKEHKKIVTRDELLEA 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ D V++N + ++++LRKKL N + + + R GY + N Sbjct: 185 LWDEID-FVDDNTLTVNVNRLRKKLENAGLQEAITTIRGKGYKFEIN 230 >gi|295693549|ref|YP_003602159.1| response regulator [Lactobacillus crispatus ST1] gi|295031655|emb|CBL51134.1| Response regulator [Lactobacillus crispatus ST1] Length = 239 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 22/223 (9%) Query: 18 LFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP-------- 64 L +D S+ F LEFE++ A + A++ F K +L LP Sbjct: 9 LLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDFFTQEKPTLILLDWMLPVYDGMTVL 68 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120 R IR S VP+I ++ S D G+DD + KP E+LAR+ + RRL+ Sbjct: 69 RRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRRLEKMRQ 128 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V + E GP++V + E L +E ++ LM + + ++ ++ + Sbjct: 129 QNDVPDTSLEFGPLKVDLLKHEFYCDNEKIYLTPKEFALITELMRDPEQVKSRDELLDTV 188 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D + N V+ +I +R K+ N + + R LGY + Sbjct: 189 WG-YDFVGQTNTVDVYIRTIRNKIGNPYK-KIIKTMRGLGYCL 229 >gi|328944343|ref|ZP_08241807.1| DNA-binding response regulator [Atopobium vaginae DSM 15829] gi|327491262|gb|EGF23037.1| DNA-binding response regulator [Atopobium vaginae DSM 15829] Length = 234 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 77/155 (49%), Gaps = 2/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126 R+ +P++ ++ S Q +D D+G DD + KP E+LAR+ A+ RR V + Sbjct: 79 RSGDSMPILILTARTSTQDKVDGLDAGADDYLTKPFEAPELLARLRALTRRQGDVIIEQM 138 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + + D + L +E +L+ L++ + V+K + + ++G +A Sbjct: 139 KFADFSLDLSTHDLMCKNHSVHLSGKEFEVLKMLLSAPSRVVSKQDLLTYVWGTTADA-S 197 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 EN VE+++S LRKKL + + R LGY ++ Sbjct: 198 ENSVEAYVSFLRKKLAYVHSKVQITTLRMLGYRLE 232 >gi|238785583|ref|ZP_04629563.1| Two-component system response regulator [Yersinia bercovieri ATCC 43970] gi|238713518|gb|EEQ05550.1| Two-component system response regulator [Yersinia bercovieri ATCC 43970] Length = 227 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 101/211 (47%), Gaps = 18/211 (8%) Query: 24 VSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80 +S EGFN+ L +E + + D +A+ ++ +++ R +R S++P+I ++ Sbjct: 20 LSGEGFNAELVLTGKEGIDGALSGDYTALILDIMLPDMSGIDVLRQVRKKSRLPIIMLTA 79 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-------GPIRV 133 + + G DD + KP + RE++AR+ A+ RR + + T G + + Sbjct: 80 KGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDEHPDLSSTDDSVITHGDLTL 139 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 R E QG+ F L E +LE L+ + + V K ++ G EA + + V+ H Sbjct: 140 NPSTRSSEWQGKTFDLTASEFNLLELLLRSPDRVVTKDELSDKGLGRPREAYDRS-VDVH 198 Query: 194 ISKLRKKLR----NKLGFDPVDSKRFLGYSI 220 IS +R+KL N L + V R +GY I Sbjct: 199 ISNIRQKLAALPGNTLNIETV---RSIGYRI 226 >gi|150389689|ref|YP_001319738.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949551|gb|ABR48079.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 224 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 7/146 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR +S +P+I ++ +L ++ G DD + KP R ++ +V K S Sbjct: 63 VCRRIRKNSNIPIIMLTARSDEDDSLLGYELGADDYLIKPYSPRVLMVKVKRFLE--KYS 120 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N E I + R V G L E +L YLM NRG + + Q+ + I+ Sbjct: 121 GNMDEMLTSASGIVINMGARLVSVDGNTISLTHTEFEMLAYLMQNRGIVINREQLIAKIW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNK 204 G +D +E V SHI LR KL +K Sbjct: 181 G-YDFYGDEKTVNSHIRNLRAKLGSK 205 >gi|295106491|emb|CBL04034.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 226 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 4/117 (3%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--PIRVFSDGRDPEVQGEVFPLPR 151 G DD + KP E++ RV AI RR G + + + R V G L Sbjct: 93 GADDYLAKPFDRDELVLRVEAIIRRSMGVRTLDAFGFRGLTLDPNTRRAAVDGAPVVLKG 152 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 ++ +LEYL+++ G+ V+KTQ+F ++G ++ NVVE ++S LRK L+ G+D Sbjct: 153 KQYDVLEYLVSHEGQLVSKTQLFDRVWGFMNDT-SSNVVEVYVSALRKVLKGH-GYD 207 >gi|284046158|ref|YP_003396498.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950379|gb|ADB53123.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 224 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 2/159 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L I R ++P++ +S ++ + D G D V KP E+ ARV A RR + Sbjct: 63 LSSIRRVKPELPVVMLSARATVDDRVAGLDGGATDYVTKPFSFDELAARVRAHLRRPRQR 122 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + I + GR+ +G L RE +L Y + + + +++ QI SA++G + Sbjct: 123 DATTLSAAGIELDLLGRNVRREGVELRLSAREFDLLAYFLRHPDQALSRQQILSAVWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D NVVE +I LR+KL P+D+ R +GY + Sbjct: 182 DFDPGTNVVEVYIRYLRRKLELPGRPTPIDTLRSVGYRL 220 >gi|251781809|ref|YP_002996111.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390438|dbj|BAH80897.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|322411154|gb|EFY02062.1| response regulator protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323126621|gb|ADX23918.1| response regulator protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 228 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 90/191 (47%), Gaps = 8/191 (4%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 E L+++ +D I L+ E+ R ++ ++ ++ S+ + D G Sbjct: 37 EGLETALEKDFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGA 96 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPL 149 DD + KP E+LAR+ AI+RR + + + +T ++ D R + L Sbjct: 97 DDYIVKPFAIEELLARIRAIFRRQDIESEK-KTPSQGIYRDLVLNPQNRSVNRGDDEISL 155 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +RE +L LM N + + + ++ S ++ +DEAVE NVV+ +I LR K+ Sbjct: 156 TKREYDLLSILMTNMNRVMTREELLSNVWK-YDEAVETNVVDVYIRYLRGKIDIPGKESY 214 Query: 210 VDSKRFLGYSI 220 + + R +GY I Sbjct: 215 IQTVRGMGYVI 225 >gi|228969212|ref|ZP_04130100.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228790479|gb|EEM38192.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 233 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121 IR +P+I +S + SG DD ++KP + E++ARV + RR K V Sbjct: 73 IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTSV 132 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N++ E G + V +D R V+G+ L +E ILE L N+G ++ +I+ A++ Sbjct: 133 EHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIYEAVWK 192 Query: 180 -LFDEAVEENVVESHISKLRKKL 201 +F ++ +N V HI+K+R K+ Sbjct: 193 EVFYKS--DNTVMVHITKIRDKI 213 >gi|225569383|ref|ZP_03778408.1| hypothetical protein CLOHYLEM_05467 [Clostridium hylemonae DSM 15053] gi|225161591|gb|EEG74210.1| hypothetical protein CLOHYLEM_05467 [Clostridium hylemonae DSM 15053] Length = 224 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 106/227 (46%), Gaps = 12/227 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D + +++ + G+ GF + E+L++ A E I ++ GE Sbjct: 1 MIFCVEDDSNIRELVVYTLESTGMKARGFE--DGREFLEALALETPELILLDIMLPGEDG 58 Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL + +++ ++P+I ++ + + DSG DD V KP E+++RV A+ R Sbjct: 59 MELLKRLKSSVKTREIPVIMVTAKGAEYDKVMGLDSGADDYVTKPFGMMELVSRVKAVLR 118 Query: 118 RLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + + E G I + + G L +E +L+ LM N + + Q+ Sbjct: 119 RTAKDDYKREDKIALGNIEIDIRKHEVRASGSTVNLTLKEYELLKRLMRNPNIVLTRDQL 178 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D E V+ H+ LR+KL G + +++ R +GY + Sbjct: 179 LEDIWG-YDFDGETRTVDVHVRTLRQKL-GACG-EKIETVRGVGYKM 222 >gi|149276735|ref|ZP_01882878.1| two-component response regulator [Pedobacter sp. BAL39] gi|149232404|gb|EDM37780.1| two-component response regulator [Pedobacter sp. BAL39] Length = 223 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 2/143 (1%) Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSD 136 IS S+ ++ G DD + KP H E+ AR+ AI RR + N++ I + + Sbjct: 78 ISARDSIDQRIEGLSLGADDYLVKPFHLSELYARITAIVRRRSFNGNDQVVFNEIEIDTT 137 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHIS 195 ++ ++ G + L ++E IL Y + N+ K V+K+ I+G D A + + +HI Sbjct: 138 AKEVKINGILINLTKKEFDILLYFVTNKSKVVSKSAAAVHIWGEDADMADSFDFIYTHIK 197 Query: 196 KLRKKLRNKLGFDPVDSKRFLGY 218 +RKKL + D S +GY Sbjct: 198 NIRKKLTDAGCKDYFQSVYGVGY 220 >gi|113866325|ref|YP_724814.1| DNA-binding response regulator CreB [Ralstonia eutropha H16] gi|113525101|emb|CAJ91446.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 232 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 84/168 (50%), Gaps = 11/168 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S P++ ++ + + G DD V KP RE+ ARV AI RR + Sbjct: 67 EVCRTLRTFSNAPVVFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRAILRRARG 126 Query: 122 SN-NRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 A++ + F+ DG +G L R E +L +L+ + G+ ++ Q+ + Sbjct: 127 GGATAAKSDEVAGFTHDKDGARLAYRGRWLELTRYEYLLLAWLVTHPGRIYSRAQLMECV 186 Query: 178 YGLFDEAVE--ENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221 + ++A++ + V++HI LR KLR G + + + R +GYS++ Sbjct: 187 W---EDALDTSDRTVDTHIKTLRAKLREASADGAERIRTHRGMGYSLE 231 >gi|304406308|ref|ZP_07387965.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344892|gb|EFM10729.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 228 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 7/151 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-I 115 G LE+ R IRA VP++ +S + F G DD V KP E++AR A + Sbjct: 57 GADGLEVCRSIRAQLDVPILIVSARDEEIDKIRGFGLGADDFVTKPFSPNELIARAKAHL 116 Query: 116 YRRLKVSNNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R + +N AE IR+ R V G L RE +L ++ A+ + +K Sbjct: 117 SRYERFANRTAEPEQIRIRELTIDKTARRVYVHGNEVVLTTREFDVLAFMAAHPNRVFSK 176 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 T++F ++G FD A + V HI ++R+K+ Sbjct: 177 TELFERLWG-FDSAGDIATVAVHIRRVREKI 206 >gi|238752020|ref|ZP_04613504.1| Two-component system response regulator [Yersinia rohdei ATCC 43380] gi|238709720|gb|EEQ01954.1| Two-component system response regulator [Yersinia rohdei ATCC 43380] Length = 239 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 114/233 (48%), Gaps = 23/233 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGE 58 +L+DD D + + +S EGFN+ L +E + ++ D SA+ ++ Sbjct: 15 ILLVDD-----DAELGTMLREYLSGEGFNAELVLTGKEGITAALSGDYSALILDIMLPDM 69 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +++ R +R +S++P+I ++ + + G DD + KP + RE++AR+ A+ RR Sbjct: 70 SGIDVLRQVRQNSRIPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVMRR 129 Query: 119 ------LKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L +++ A T G + + R QG+ F L E +LE L+ + + V K Sbjct: 130 FDERPDLSSTDDSAITLGNLTLSPSTRSSLWQGKPFDLTASEFNLLELLLRSPERVVTKD 189 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR----NKLGFDPVDSKRFLGYSI 220 ++ G EA + + V+ HIS +R+KL N+L + V R +GY I Sbjct: 190 ELSDKGLGRPREAYDRS-VDVHISNIRQKLAALPDNRLNIETV---RSIGYRI 238 >gi|228911694|ref|ZP_04075468.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228847923|gb|EEM92803.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 223 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+ ++ S L + G DD + KP + +LARV I RR + Sbjct: 63 ICREIRKTSDVPIFMVTSRDSDVDELISMNLGADDFITKPYNTEILLARVTNILRR---T 119 Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +T I ++ D Q + L + E +IL L+ NRG V + + Sbjct: 120 SGDFKTNHILIYRDFNLNLSNATVTYQDKSVELTKNEVKILSCLINNRGNIVKRDSLIET 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 ++ D V+++ + +I++LRKKL +LG +P+ ++R LGY Sbjct: 180 LWK-SDYFVDDSTLTVNINRLRKKLE-ELGIENPIATRRSLGY 220 >gi|163856366|ref|YP_001630664.1| two-component response regulatory protein [Bordetella petrii DSM 12804] gi|163260094|emb|CAP42395.1| two-component response regulatory protein [Bordetella petrii] Length = 229 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 5/163 (3%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA +S +P++ ++ S++ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLRRLRARNSLLPVLILTAADSVEQRVKGLDLGADDYMAKPFALSELEARVRALTRRG 119 Query: 120 KVSNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 VF GR V + L RE +LE L+ G+ V+KTQ+ + Sbjct: 120 AGGGATLLRHGRLVFDQTGRVALVDDQTLDLSAREVSLLEILLTRSGRMVSKTQLVDHLC 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E ++ +LRKKL G + + R LGY ++ Sbjct: 180 E-WGEEVSTNAIEVYVHRLRKKLEPS-GVKII-TVRGLGYCLE 219 >gi|156936234|ref|YP_001440151.1| transcriptional regulatory protein YedW [Cronobacter sakazakii ATCC BAA-894] gi|156534488|gb|ABU79314.1| hypothetical protein ESA_04133 [Cronobacter sakazakii ATCC BAA-894] Length = 226 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 3/158 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R P++ ++ ++ + + G DD + KP E+LARV A RR + Sbjct: 64 RALRTAKATPVLCLTARDAVSDRVKGLELGADDYLVKPFSFAELLARVRAQLRRHAPAAA 123 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDE 183 + + + + GE L R+E +L L + G+ + +T I S ++G+ FD Sbjct: 124 TLQVADLTLDTARHAASRGGERIALTRQEFTLLWLLASRVGEILPRTLIASEVWGINFDS 183 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E NVV+ I +LRKK+ + +++ R +GY ++ Sbjct: 184 --ETNVVDVAIRRLRKKIDDPFPLKLIETVRGMGYRLN 219 >gi|118616126|ref|YP_904458.1| two component response transcriptional regulatory protein PrrA [Mycobacterium ulcerans Agy99] gi|118568236|gb|ABL02987.1| two component response transcriptional regulatory protein PrrA [Mycobacterium ulcerans Agy99] Length = 236 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 99/207 (47%), Gaps = 15/207 (7%) Query: 23 GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75 G+ L GF +++ E L+S+ + +A ++ VL+ ++ A + VP+ Sbjct: 29 GLRLSGFEVSTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 85 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPI 131 +S S+ + ++G DD + KP E++ARV A+ RR + + GP+ Sbjct: 86 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGATATSSSEIITVGPL 145 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V GR V G L +RE +L L ++ +++ Q+ ++G +D A + NVV+ Sbjct: 146 EVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 204 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 I LR+KL G + + R +G+ Sbjct: 205 VFIGYLRRKLEANGGPRLLHTVRGVGF 231 >gi|332638553|ref|ZP_08417416.1| DNA-binding response regulator [Weissella cibaria KACC 11862] Length = 229 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 8/148 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R P+I ++ S+ + D G DD V KP E+LARV A+ RR+ Sbjct: 61 LEVARRLREVKNTPIIMMTARDSVIDRVSGLDYGADDYVVKPFAIEELLARVRALLRRIN 120 Query: 121 VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + T + V + R ++ L +RE +L LM N ++ ++ Sbjct: 121 IETEEHSTHQSVVRYRDLTVEKENRIARRGNDIINLTKREYELLLILMENINVVQSREEL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G +D +E NVV+ +I LR K+ Sbjct: 181 LKKVWG-YDSQIETNVVDVYIRYLRNKI 207 >gi|313888528|ref|ZP_07822195.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845557|gb|EFR32951.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] Length = 223 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 81/157 (51%), Gaps = 5/157 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLKVSNNR 125 I+ +P++ +S L F+ G+DD V KP +E++AR+ I R KV N+ Sbjct: 67 IKKIKNIPVLMLSARSEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVNRNNKVEENK 126 Query: 126 A-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E +++ DGR V E+ L +E +L Y++ N+ +++ ++ + ++G +D Sbjct: 127 TMEFEGLKIDLDGRVVFVDDEMIDLTPKEYDLLVYMVKNKNIALSRDKLLNQVWG-YDFY 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E+ V++HI LR ++ F + + R +GY D Sbjct: 186 GEDRTVDTHIKMLRNSIKEYRKF--IITVRGVGYKFD 220 >gi|153811600|ref|ZP_01964268.1| hypothetical protein RUMOBE_01992 [Ruminococcus obeum ATCC 29174] gi|149832341|gb|EDM87426.1| hypothetical protein RUMOBE_01992 [Ruminococcus obeum ATCC 29174] Length = 222 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 14/162 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 IR SQVP+I IS + G DD + KP + A++ AI RR Sbjct: 67 IRRISQVPIIFISSASDNMNMVMAMSRGADDFIAKPFDLDVLTAKIQAILRRTYSFGTPG 126 Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + A P R G L + E RILE L+ + GK V++ I + ++ Sbjct: 127 SVLEHKGAVLNPSRC-----TLTWNGHDIDLTKNELRILEILLEHAGKAVSRDAIMTKLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V++N + +I++LRKKL + D + +K+ LGY + Sbjct: 182 E-SDSFVDDNTLTVNITRLRKKLEGEGLKDFIITKKGLGYMV 222 >gi|119503167|ref|ZP_01625251.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2080] gi|119460813|gb|EAW41904.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2080] Length = 233 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 6/163 (3%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100 R D+ ++ L G G + L RI RA +P+I ++ + + D G DD + Sbjct: 47 RPDIVLLDWMLPG-GSGIELLRRIKRAEMTQDLPVIMLTAKAAEHNVIQGLDVGADDYIT 105 Query: 101 KPIHHREILARVAAIYRRLKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 KP RE+LAR+ A+ RR K S++R + + D R V E L E +L Sbjct: 106 KPFALRELLARIKALLRRAKSSDDRNLLVVRDLTIDIDSRRAFVGEEALQLGPTEFNLLL 165 Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + M++ + ++Q+ ++G + VEE V+ HI +LR L Sbjct: 166 FFMSHPERAYTRSQLLDRVWG-ANIYVEERTVDVHIRRLRAAL 207 >gi|108803040|ref|YP_642977.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764283|gb|ABG03165.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 227 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 22/212 (10%) Query: 23 GVSLEGFNSLEFEEW---LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGI 78 G+S +G++ L E+ L+ + EDV + ++ G E+ R +R +P++ + Sbjct: 19 GLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGREVLRRLRLRRPGLPVLML 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGP 130 + ++T + D+G DD + KP E+LAR+ A+ RR L+ + + + Sbjct: 79 TARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRADQPESTALRAGDLKLDLLS 138 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189 RV+ GR E L RE +LEYLM + + +++ QI SA++ FD NV Sbjct: 139 RRVWRAGRQVE-------LSSREFALLEYLMRHPRQVLSRQQILSAVWDYAFDPG--SNV 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V+ ++ LR+KL + + R GY D Sbjct: 190 VDVYVRYLRRKLDRPGEPSLITTVRGAGYRFD 221 >gi|331084796|ref|ZP_08333884.1| hypothetical protein HMPREF0987_00187 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410890|gb|EGG90312.1| hypothetical protein HMPREF0987_00187 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 223 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 3/152 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 + + Q+P++ +S L + F G+DD + KP+ E+ RV A+ RR + R Sbjct: 69 QVNRQIPILFMSAKDDLPSKRKGFLVGIDDYMVKPVELAELEMRVRALLRRANIEMERKL 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + + +DG + GE + RE IL L++ K + Q+ +G+ D Sbjct: 129 VVANLELDADGMTASIDGEEISITTREFHILYKLLSYPKKTFTRAQLMDEFWGI-DSGTS 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ +I+KLR K GF+ + + R LGY Sbjct: 188 LRAVDVYITKLRDKFSACNGFE-IKTVRGLGY 218 >gi|229158434|ref|ZP_04286496.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228625041|gb|EEK81806.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 229 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 8/152 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 64 VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123 Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I V R V L E IL YLM N+G + + Q+ S Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYLMKNQGIVLTREQLIS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 I+G ++ A ++ V SHI LR KL K + Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|226310694|ref|YP_002770588.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093642|dbj|BAH42084.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 230 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 102/227 (44%), Gaps = 15/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 +L+DD I F + G+ EGF L ++ + + + V ++ + Sbjct: 12 ILLVDDEPT-----ILQFLEMGLENEGFQVLTAQDGMNAVTMVKEHQPHVVILDVMM--P 64 Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-I 115 G E+ R+++ V I ++ ++ + G DD + KP E+LAR+ A I Sbjct: 65 GMDGFEVCRMLKKIQNVATIMLTAREDVEDRVKGLTLGADDYMIKPFSFEELLARIHARI 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ GP ++ ++ G + L E +L+YL+ N G ++K I Sbjct: 125 RNHYPHLLSKVHLGPFQIDDRRKEITYDGTLLELSPTEYSLLKYLVTNHGLVLSKPMILD 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G +D EEN+VE +I LR KL ++ + + R GY +D+ Sbjct: 185 NVWG-YDFGGEENIVEVYIRSLRDKLNDR-QHRIIRTLRGAGYRVDF 229 >gi|254380481|ref|ZP_04995847.1| turgor pressure regulator [Streptomyces sp. Mg1] gi|194339392|gb|EDX20358.1| turgor pressure regulator [Streptomyces sp. Mg1] Length = 229 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 7/147 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R SQVP++ +S + + D+G DD + KP E++AR+ A+ RR Sbjct: 62 IEVIKQLRGWSQVPVLVVSARHGSEEKIQALDAGADDYITKPFSMDELMARLGAVIRRTP 121 Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A ET V R +G+ L E +LE L+ NRG+ V++ ++ Sbjct: 122 THEPAAADEAVVETEEFTVDLLARKARRRGKSIRLTPTEWHLLEVLIRNRGRLVSQRRLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++G + N + +++ LR+KL Sbjct: 182 QEVWG-SSYGTQTNYLRVYMAHLRRKL 207 >gi|21233316|ref|NP_639233.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770278|ref|YP_245040.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|21115147|gb|AAM43115.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575610|gb|AAY51020.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] Length = 221 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 9/154 (5%) Query: 57 GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ L + R +R H P+I ++ L + D+G DD + KP E++ARV AI Sbjct: 56 GDSGLTVIRYMRGHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARVRAI 115 Query: 116 YRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR S R G + V R G+ L E R+L LM G+ V K Sbjct: 116 ARR---SQGRVVPLLTQGEVSVDPSSRKVTRNGKWVALSAHEYRLLLALMERAGRVVTKD 172 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 Q+ +YG E N++ ++ +LR+KL +++ Sbjct: 173 QLEEGVYGGPSEG-GSNMIAVYVHQLRRKLGDEV 205 >gi|320451218|ref|YP_004203314.1| response regulator [Thermus scotoductus SA-01] gi|320151387|gb|ADW22765.1| response regulator [Thermus scotoductus SA-01] Length = 224 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 11/165 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR S VP++ ++ ++ ++ D+G DD + KP E+LARV A RR+ Sbjct: 63 IEVAKRIRKTSNVPILILTAKDRIEDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRV- 121 Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + A TG IRV +GR+ G L +E +LE L N GK ++ +I Sbjct: 122 ---SPAITGEIRVADLIINLEGREVFRSGRRIELSNKEFELLELLAKNPGKVFSRYEIEE 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + NVV+ +I LRKKL + + R +GY + Sbjct: 179 KVWPGYQGG--SNVVDVYIGYLRKKLEAAGERRLIHTVRGVGYVL 221 >gi|254788364|ref|YP_003075793.1| phosphate regulon transcriptional regulator PhoB [Teredinibacter turnerae T7901] gi|237687065|gb|ACR14329.1| phosphate regulon transcriptional regulatory protein PhoB [Teredinibacter turnerae T7901] Length = 235 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 109/226 (48%), Gaps = 15/226 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V+ D+RA+ +AL D LE ++ E + + + R D+ ++ + G Sbjct: 6 ILVVDDERAIRDMLRVALEMADYAVLEAADAQEAHQIVVDT-RPDLILLDWMM--PGVSG 62 Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E R +++ ++P+I ++ + + G DD + KP RE++AR+ A+ R Sbjct: 63 IEFARRLKSQEVTREIPIIMLTAKGEEDNKIQGLEIGADDYITKPFSPRELVARLKAVLR 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R S++ + PI V + DP + G L E R+LE+ + ++ + ++ Q Sbjct: 123 R---SDSLSSGDPITVENLCLDPTSHRVTIAGMPVQLGPTEYRLLEFFLTHQERVYSRNQ 179 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + ++G + VEE V+ HI +LRK L+ + V + R GY Sbjct: 180 LLDYVWG-GNVYVEERTVDVHIRRLRKALKLENHDRLVQTVRGAGY 224 >gi|227111566|ref|ZP_03825222.1| DNA-binding transcriptional regulator PhoP [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 229 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/222 (21%), Positives = 101/222 (45%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L++ + G ++ + + ++ D++ ++ L E + Sbjct: 3 ILVVEDNVLLRHHLTVQMNEMGHQVDAASDAKEADYFLHENMPDIAIVDLGL--PDEDGM 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R R H ++P++ ++ Q + ++G DD V KP H E++AR+ A+ RR Sbjct: 61 SMIRRWRTHQVKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMRRNS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ P + R+ + L E I+E L+ N+GK V+K + +Y Sbjct: 121 GLASQVISLPPFEIDLSRREMMIHSSPIKLTAFEYTIIETLIRNKGKVVSKESLMLQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E + ++ + +LRKK++ D + + R GY D Sbjct: 181 -DAELRESHTIDVLMGRLRKKIQQAEAPDVITTVRGQGYRFD 221 >gi|239630540|ref|ZP_04673571.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526823|gb|EEQ65824.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 233 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 17/169 (10%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR +QVP+I ++ + + G DD + KP E++ARV R +N Sbjct: 68 RKIRQSNQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALR-----HN 122 Query: 125 RAETGPIRVFS------DGRDPEVQ-GEV-FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R P +F D + VQ GEV PL +RE +L L+A++ + ++ + A Sbjct: 123 RQAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDA 182 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223 ++G FD + N+++ +I LR K+ + G + + R +GY + N Sbjct: 183 VWGTDFDG--QPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229 >gi|116490563|ref|YP_810107.1| DNA-binding response regulator [Oenococcus oeni PSU-1] gi|116091288|gb|ABJ56442.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Oenococcus oeni PSU-1] Length = 228 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 100/214 (46%), Gaps = 24/214 (11%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74 YI L DG G + E Q+S R +V ++ +++ K + + L RI + +SQV Sbjct: 28 YIVLTASDGEM--GLSVFE-----QNSNRINVVLLD-WMLPKRDGLEVLRRIRKLNSQVS 79 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRA 126 +I ++ + + DSG DD + KP E+LAR+ R +VSN Sbjct: 80 IILMTAKSDIGDKVAALDSGADDYITKPFEIEELLARLRVTIRHQNKPRPKLYQVSNLVL 139 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + RV D G+V L +RE ++L YL+ N K + + + ++G+ D + Sbjct: 140 DLDAHRVTRD-------GQVIDLTQREFQLLTYLIENADKTLTRDDLLDNVWGV-DFNGQ 191 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N + +I LR+K+ + + + R +GY + Sbjct: 192 YNTADVYIRYLRQKIDDHFYPKLIHTVRSVGYVL 225 >gi|325262523|ref|ZP_08129260.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp. D5] gi|324032355|gb|EGB93633.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp. D5] Length = 230 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 6/146 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 LE+ + +R S P+I +S Q + D+G DD V KP + E++AR+ A+ +R Sbjct: 64 LEVVKNVRELSSTPIIVVSARQEEQEKIQALDAGADDYVTKPFYMGELMARIRVAMRKRE 123 Query: 120 KVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +++ A+ + V R V E L E +IL L+ANRGK + I Sbjct: 124 RMAPESAQEMFRQDYLTVDYTKRSVLVDNEEIHLTPIEYKILTLLIANRGKVLTHNYILK 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 I+G + E VE + ++ LR+K+ Sbjct: 184 EIWG-YGEGVEAGTLRVFMATLRRKI 208 >gi|312885159|ref|ZP_07744839.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309367172|gb|EFP94744.1| DNA-binding response regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 219 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 12/153 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P+I +S +L ++ ++G DD + KP E++AR+ A RR S N + I Sbjct: 73 TPVIILSARDTLTQRIEGLNAGADDYLTKPFEMPELIARIRAQLRR--ASGNASPVMQIG 130 Query: 133 VFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 S D R +V QG+ L E +++ Y M N K +++T++ IY FD + N Sbjct: 131 NLSLDTRSSKVMWQGQAISLTALEYKVVAYFMHNPEKVISRTELVEHIYKQDFDR--DSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + ++RKK+ K+ + + R LGY ++ Sbjct: 189 TIEVFVGRIRKKIAPKV----IKTVRGLGYQLN 217 >gi|257484069|ref|ZP_05638110.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008186|gb|EGH88243.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 227 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 3/167 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +++ R +R+ S VP++ I+ L D G DD + KP RE++ARV AI Sbjct: 63 GRDGMDICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR ++ G ++V G L E R+L + G+ ++ + Sbjct: 123 RRTSSTDPHTSKG-LQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +Y V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 182 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 227 >gi|242239495|ref|YP_002987676.1| DNA-binding transcriptional regulator PhoP [Dickeya dadantii Ech703] gi|242131552|gb|ACS85854.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech703] Length = 223 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 2/151 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 ++P++ ++ S Q + ++G DD V KP H E++AR+ A+ RR +++ P Sbjct: 72 KLPILVLTARESWQEKVAVLEAGADDYVTKPFHLEEVMARIQALMRRNSGLASQVISLPP 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 V R+ V G L E I+E L+ N GK V+K + +Y E E + + Sbjct: 132 FEVDLSRRELMVHGAPVKLTAFEYTIIETLIRNIGKVVSKESLMLQLYP-DAELRESHTI 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + +LRKKL+ + + + R GY D Sbjct: 191 DVLMGRLRKKLQAANTNEVITTVRGQGYRFD 221 >gi|237811046|ref|YP_002895497.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|237502846|gb|ACQ95164.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] Length = 269 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 109 IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR- 167 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + R+E+ G + + + G L RE +LE L+A G ++K+Q+ Sbjct: 168 --QSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 225 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 226 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 265 >gi|300774744|ref|ZP_07084607.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300506559|gb|EFK37694.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 230 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 83/169 (49%), Gaps = 4/169 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G +L + + S + +I + +L ++ + G DD + KP H E+ AR+ A Sbjct: 57 GNGLNILNYIKTEKISSGILIISAKN--ALDDKINGLERGADDYITKPFHLPELHARLRA 114 Query: 115 IYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +YRR K+ + + I + +D + + + ++E +L Y + N+ + ++K I Sbjct: 115 VYRRKKMEGYSEVKFNEIILNTDTYEVIINETRLEVTQKEFELLLYFLVNKNRVLSKQSI 174 Query: 174 FSAIYGLFDEAVEE-NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++G + + + + V H+ LRKK+ G D +++ LGY + Sbjct: 175 ANHLWGDYTDNLSNFDFVYQHVKNLRKKIGAAQGKDYIETIYGLGYKFN 223 >gi|169632976|ref|YP_001706712.1| putative two-component response regulator [Acinetobacter baumannii SDF] gi|169151768|emb|CAP00583.1| putative two-component response regulator [Acinetobacter baumannii] Length = 220 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 8/165 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GEKVL R VP+I I+ S+ ++ D G +D + KP E+ AR+ Sbjct: 59 GEKVLTTIR--HKQKNVPVIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRTQL 116 Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+ +S T G +++ + + G+ L +E +IL LM + + + Q+ Sbjct: 117 RKQTLSQQSILTWGDLQLDTQAKVVLSAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A+Y + E +E N +E I +LRK K+G + + R LGY + Sbjct: 177 ALYA-WGEEIESNAIEVFIYQLRK----KIGSSSIKTIRGLGYRM 216 >gi|167750447|ref|ZP_02422574.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702] gi|167656598|gb|EDS00728.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702] Length = 255 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 23/192 (11%) Query: 33 EFEEWLQSSAREDVSAIEAFLIGKGEKV------LELPRI--------IRAHSQVPLIGI 78 E+ E+ + E V ++A + K + + +PR+ IR P++ + Sbjct: 51 EYAEYEGHTVYEAVDGMQAVDMAKEQDFDIIIMDVMMPRLDGFSACKEIRKFKNTPILML 110 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN----NRAETGPIRVF 134 S L F+ GVDD V KP +E+LAR+ AI +R K N + + + Sbjct: 111 SARTEEYDKLFGFEMGVDDYVVKPFSPKEVLARINAIIKRNKSGNEPVGETVKFEGLEIN 170 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 RD + GE L +E +L YL+ N+ + + ++ ++G +D ++ +++HI Sbjct: 171 FTARDVFIDGEKANLTPKEYDLLFYLVKNKNIALTRNKLLEEVWG-YDFFGDDRTIDTHI 229 Query: 195 SKLRKKLRNKLG 206 K LRN LG Sbjct: 230 ----KMLRNNLG 237 >gi|330960618|gb|EGH60878.1| DNA-binding response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 245 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 11/167 (6%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE + R +R P++ ++ + D+G DD V KP+H R +LAR+ Sbjct: 57 LMLPGEDGFSICRSVRDRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARI 116 Query: 113 AAIYRRLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 A+ RR + R GP+ V + R+ ++ + L E +L L+AN G+ Sbjct: 117 KALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGR 176 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +++ +IF+A+ G+ + ++ ++ IS++R K+G DP+ + Sbjct: 177 TLSREEIFTALRGIGYDG-QDRSIDVRISRIRP----KIGDDPIHPR 218 >gi|289549393|ref|YP_003470297.1| response regulator [Staphylococcus lugdunensis HKU09-01] gi|315659938|ref|ZP_07912797.1| response regulator [Staphylococcus lugdunensis M23590] gi|289178925|gb|ADC86170.1| response regulator [Staphylococcus lugdunensis HKU09-01] gi|315495226|gb|EFU83562.1| response regulator [Staphylococcus lugdunensis M23590] Length = 221 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 5/153 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNR 125 + S +P+I ++ +L T L F G D + KP + E++ R+ I + + N Sbjct: 67 SQSNIPIIFLTAKDNLDTRLKCFSLGAKDYIAKPFYMEELIVRIENILTQNNSYSKNKNI 126 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 +T + + D + + R E I++ L N +K QI+ +I F++ Sbjct: 127 KKTKDLIINYDTFSVYAGDHLLDITRTEFEIIKLLSLNSNFYFSKDQIYDSIN--FNKIG 184 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VV HI K+RKKL F+ +D+K +GY Sbjct: 185 NTQVVSEHIRKIRKKLHQYSDFEYIDTKWGVGY 217 >gi|228990402|ref|ZP_04150367.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228768928|gb|EEM17526.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 210 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR + Sbjct: 55 IRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQE 114 Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E GPI + R E+ GE L +E +L +L + G+ ++ Q+ ++G +D Sbjct: 115 EELQFGPIVINEKSRRIEIDGEPISLTVKEFDLLYFLCGHSGQVFSREQLLEKVWG-YDY 173 Query: 184 AVEENVVESHISKLRKKL 201 A V++H+ +R KL Sbjct: 174 AGSTRTVDTHVKTMRLKL 191 >gi|77461417|ref|YP_350924.1| DNA-binding response regulator CreB [Pseudomonas fluorescens Pf0-1] gi|77385420|gb|ABA76933.1| two-component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 226 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 19/227 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA------REDVSAIEAFLIG 55 ++++D A + D I F G EGF + WL A R+ + + IG Sbjct: 4 ILIVEDEAAIADTLI--FALQG---EGFTT----TWLSLGAAALEHQRQTPADLIILDIG 54 Query: 56 KGE-KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 + E + +R S+VP++ +S + + + G DD V KP RE+ ARV A Sbjct: 55 LPDISGFETCKQLRRFSEVPVLFLSARNAEIDRVVGLEIGADDYVVKPFSPREVAARVRA 114 Query: 115 IYRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 I +R+ A + R+ + +G+ L R E R+L+ L+ + ++ Q+ Sbjct: 115 ILKRMAPRPVIEASSALFRIDPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSREQL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 A+ G+ +A E ++SHI +R KLR + +P+ + R LGYS Sbjct: 175 LDAL-GVAADAGYERSIDSHIKSVRAKLRLVRAEAEPIQTHRGLGYS 220 >gi|332308798|ref|YP_004436648.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332176127|gb|AEE25380.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 223 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/222 (21%), Positives = 107/222 (48%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D ++ D G+ + + +L + D+ ++ L G G Sbjct: 3 ILLVEDDPIIADAICVYLGNAIMQVTHAATLSEAIHYVAVCSFDICLLDISLPDGSG--- 59 Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LEL +++R +P+I ++ +++ + + G DD V KP E++AR+ ++YRR Sbjct: 60 LELIKVVRKKKLALPIILLTAKDAIEDKVQGLNDGADDYVTKPFDFEELMARIKSVYRRF 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N+ + G ++ S+ + ++ + L E ++L ++N + + + + +Y Sbjct: 120 THQQNSYLQYGELKYDSNSKVAQLGDKRLALSASELKLLVAFLSNPNRILDENHLKDYLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G+ +E V N + H+ LRK K+G + + ++R LG+ + Sbjct: 180 GV-NEDVSSNALNVHLFNLRK----KVGKNIIVTERGLGFRL 216 >gi|309390021|gb|ADO77901.1| two component transcriptional regulator, winged helix family [Halanaerobium praevalens DSM 2228] Length = 229 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 87/170 (51%), Gaps = 16/170 (9%) Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R +RA+ Q+P+I ++ + + G DD + KP RE++AR+ AI+R Sbjct: 60 MEVCRQMRANKKLRQIPIIMLTAKGEEIERILGLEMGADDYMTKPFSPRELVARIKAIFR 119 Query: 118 RLKVSNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 R+K E ++ S G+ + + E L +E +L YL+ N+G+ ++ Sbjct: 120 RIKELKVDQEKIKDKIISAGKLKLDIPRHEVFLGTEKIILTPKEFELLRYLVINQGRVLS 179 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + I+G ++ A + V+ HI +LR+K++ D + + R +GY Sbjct: 180 RDLLLEKIWG-YEYAGDTRTVDVHIRRLRQKIKA----DQIVTVRGVGYK 224 >gi|320009638|gb|ADW04488.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 245 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 97/207 (46%), Gaps = 20/207 (9%) Query: 31 SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78 +L +E W SA + A+ ++ + + L R+ R S VP++ + Sbjct: 38 ALRYEGWEVRSAGDGAGAVRTARDFRPDAVILDVMLPDMDGLAVLGRLRRELSDVPVLFL 97 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134 + S++ + +G DD V KP E++AR+ + RR ++ R+E+ G + + Sbjct: 98 TARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGTASVRSESTLVVGDLVLD 157 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D + + L E +L +LM N + ++K QI ++ +D + NVVE +I Sbjct: 158 EDSHEVHRGDDSIHLTATEFELLRFLMRNPRRVLSKAQILDRVWN-YDFGGQANVVELYI 216 Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220 S LRKK+ G P + ++R GY I Sbjct: 217 SYLRKKI--DAGRTPMIHTRRGAGYLI 241 >gi|288940893|ref|YP_003443133.1| winged helix family two component transcriptional regulator [Allochromatium vinosum DSM 180] gi|288896265|gb|ADC62101.1| two component transcriptional regulator, winged helix family [Allochromatium vinosum DSM 180] Length = 236 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 18/158 (11%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S VP++ +S S + D+G +D V KP +E LARV A+ RL + R Sbjct: 73 LRHWSTVPVMILSVRSSESEKVAVLDAGANDYVTKPFGIQEFLARVRALL-RLPRATERP 131 Query: 127 ETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G ++ DG R V GE L R+E I + L++N G+ + +TQ+ I+ Sbjct: 132 DAG---IYDDGYLHIDLIKRIVSVMGEEVHLTRKEFAIFKMLVSNPGQVITQTQLLREIW 188 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 G A + + + + I ++R+KLR + D R+L Sbjct: 189 GP-THAGDTHYLRNFIGRIRQKLR-----EDTDEPRYL 220 >gi|228956708|ref|ZP_04118495.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802973|gb|EEM49804.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 238 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 15/162 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 63 IEVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V SNN A+ F + E L +E +L++ +N G+ KTQ Sbjct: 123 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213 +F ++ D +E +N V HI KLRKK+ DP + K Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218 >gi|168491488|ref|ZP_02715631.1| response regulator [Streptococcus pneumoniae CDC0288-04] gi|183574210|gb|EDT94738.1| response regulator [Streptococcus pneumoniae CDC0288-04] Length = 225 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP + +LA+V + RR Sbjct: 67 IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + + D QG+V L + E +IL L + G VA+ + ++ D Sbjct: 127 SLLEYTGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +GF +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLVGF--IETKKGIGYGL 222 >gi|134099882|ref|YP_001105543.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912505|emb|CAM02618.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 234 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 10/204 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V+D G ++E E L + + D+ ++ L G G LE Sbjct: 12 LVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGG--LE 69 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R +VP++ ++ + + G DD V KP RE++ RVA+I RR + S Sbjct: 70 VCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRARTS 129 Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 AE G +R+ D R + G L RE +L +L+ + G+ ++ ++ + Sbjct: 130 QP-AEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQV 188 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G + + V H+ +LR+K+ Sbjct: 189 WGW--SFGDHSTVTVHMRRLREKV 210 >gi|28872582|ref|NP_795201.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato str. DC3000] gi|213968546|ref|ZP_03396689.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato T1] gi|301383518|ref|ZP_07231936.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato Max13] gi|302062568|ref|ZP_07254109.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato K40] gi|302130235|ref|ZP_07256225.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855837|gb|AAO58896.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato str. DC3000] gi|213926834|gb|EEB60386.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato T1] gi|330878107|gb|EGH12256.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967971|gb|EGH68231.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. actinidiae str. M302091] gi|331017829|gb|EGH97885.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 229 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 52/213 (24%), Positives = 102/213 (47%), Gaps = 24/213 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 +++DD A +++ IA+ + + G++ +E E Q+ A + D+ ++ L Sbjct: 6 ILIVDDEAPIRE-MIAV----ALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWML--P 58 Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ +P+I ++ + + G DD + KP RE++AR+ Sbjct: 59 GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR ++ + PI V DP + G+ + E R+L++ M ++ + Sbjct: 119 AVLRRAGPTDGES---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ ++G + VEE V+ HI +LRK L Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207 >gi|329851780|ref|ZP_08266461.1| response regulator [Asticcacaulis biprosthecum C19] gi|328839629|gb|EGF89202.1| response regulator [Asticcacaulis biprosthecum C19] Length = 219 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 14/169 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G + L ++ R+ P++ ++ ++ ++ DSG DD + KP E++AR A+ Sbjct: 56 GSGLAWLTQLRRSGDSTPVLILTARDAVGHRIEGLDSGADDYLVKPFDLDELIARCRALL 115 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKT 171 RR E P + DP+ + ++ L RE + E L+A RG V+K Sbjct: 116 RRASEHVALREVAPGVDY----DPQARRILYHHQPVHLSAREMAVFERLVAARGGIVSKG 171 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI ++Y + ++ N VE HIS +R+KL D + + R +GY + Sbjct: 172 QIEESLYD-WSRDIDSNTVEVHIS----SIRHKLSRDVIQTVRGMGYRL 215 >gi|298291053|ref|YP_003692992.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296927564|gb|ADH88373.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 229 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 5/175 (2%) Query: 35 EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDS 93 EE L+++ + AI ++ G +E+ + +RA Q P+I +S S+ + + Sbjct: 34 EEALRAANGKAWEAIILDVMLPGRSGIEVCKALRAGGQTAPIIMLSARSSVNERTEGLMA 93 Query: 94 GVDDVVNKPIHHREILAR--VAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLP 150 G DD + KP E+LAR V A+ R S R T GP+ + D R ++ G L Sbjct: 94 GADDYIIKPFAFEELLARLKVQALRRSNADSEPRVLTAGPLSLDLDTRQAQLAGTRVRLT 153 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 RE +L LM + + +A+ IF+A++ A NVV+ ++ LR KL L Sbjct: 154 EREVELLALLMRHPSEPLARADIFAALWAGHGGA-SLNVVDVYVGYLRHKLAEAL 207 >gi|295090383|emb|CBK76490.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 225 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 11/161 (6%) Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 I+R S+ P+I ++ + + FD DD + KP +L R+ A+ RR + Sbjct: 67 ILRKESRTPIIMLTARDDDASQMKGFDVLADDYIIKPFSMPLVLRRIEAVLRRTE-QGTE 125 Query: 126 AETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E IR D E V + L RE IL+ L+ N GK ++ + +++G Sbjct: 126 EEPSVIRYKEITLDAENYEVLVGTDEVSLTSREFEILKLLLENPGKVFSRESLLDSVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ ++ +V +HI K +R KLG D +++ R +GY I+ Sbjct: 185 YEYYGDQKIVNTHI----KNIRKKLGVDYIETIRGVGYKIE 221 >gi|291531882|emb|CBK97467.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium siraeum 70/3] Length = 244 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 17/173 (9%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R +R S + +I +S + G DD V KP E++ARV A+YRR+ Sbjct: 64 ELCRWLRQKSDTMGIIMLSAKSQEVDKIRCLTQGADDYVTKPFSPSELVARVDAVYRRVS 123 Query: 121 VSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 +S R +GP + + R G + + E ++LEY M N G + + Sbjct: 124 LSIARPPEDEGRTLISGPFSINTKSRIFTKNGTGIEITQVEYQLLEYFMENSGSALDRRS 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK---RFLGYSIDW 222 I + I+G D ++ +V+ +I +LR K+ DP + + GY W Sbjct: 184 ILTHIWG-NDYYGDDKIVDVNIRRLRMKIEE----DPSNPRYITTIWGYGYKW 231 >gi|228988075|ref|ZP_04148175.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771645|gb|EEM20111.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 229 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/168 (31%), Positives = 74/168 (44%), Gaps = 10/168 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 64 VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123 Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I V R V L E IL YLM N+G + + Q+ S Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLIS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 I+G ++ A ++ V SHI LR KL K + V + GY + N Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY--VTTVVRTGYKFEGN 228 >gi|229080343|ref|ZP_04212868.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228703012|gb|EEL55473.1| Two-component response regulator [Bacillus cereus Rock4-2] Length = 228 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 69/146 (47%), Gaps = 7/146 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY--RRLKVS 122 R IR S VP+I ++ TL F+ G DD V KP +LAR + R Sbjct: 66 RRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYSSAV 125 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N AE + I V R + GE L E I+ YLM N+G +++ Q+ + I+ Sbjct: 126 NVPAEDTLTSSGIHVHFPSRTVTIDGEDINLTHTEFEIVTYLMRNQGIVISREQLINKIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNK 204 G ++ A ++ V SHI LR KL K Sbjct: 186 G-YEFAGDDRTVNSHIRNLRHKLGQK 210 >gi|119896995|ref|YP_932208.1| DNA-binding response regulator CreB [Azoarcus sp. BH72] gi|119669408|emb|CAL93321.1| two-component system regulatory protein [Azoarcus sp. BH72] Length = 235 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 10/168 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S VP+I ++ + + G DD V KP RE+ +RV AI RR + Sbjct: 64 DVCRALRRESDVPVIFLTARSDEVDRIVGLELGADDYVPKPFSPREVASRVRAILRRARP 123 Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + P + G G L R E R+L L+ G+ ++ Q+ Sbjct: 124 QPAAVAPAPAAETCSAPFHHDAAGARIAYHGVWLSLTRYEYRLLATLLDRPGRVQSRAQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++ ++++E V++HI LR KLR + DP+++ R LGYS+ Sbjct: 184 MADVWRDAEDSLERT-VDAHIKTLRAKLRAVREDEDPIETHRGLGYSL 230 >gi|315094756|gb|EFT66732.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] Length = 243 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 22/220 (10%) Query: 18 LFGDDGVSLEGFNSL--EFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LELP 64 L +D SL G S+ +E W ++A A+ + + + LE+ Sbjct: 21 LVVEDEPSLTGLLSMAMRYEGWDVTTANSGAHAVHEAQATRPDVIVLDMRLPDFDGLEVM 80 Query: 65 RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R IR + VP + ++ ++ + +G DD + KP E++AR+ + RR + Sbjct: 81 RQIRMNQPTVPAVFLTAKDAISGRIAGLTAGGDDYITKPFSLEEVIARLRTLLRRAGATE 140 Query: 124 NRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++++ G + + D R+ GE L E +L Y M N + ++K QI ++ Sbjct: 141 PKSDSMLTVGDLTLDEDSREVRRAGEEIHLTTTEFELLRYFMRNPKRVLSKAQILDRVWN 200 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +D + NVVE +IS LRKK+ G P + + R GY Sbjct: 201 -YDFRGQANVVELYISYLRKKIDR--GHTPMIHTMRGAGY 237 >gi|300692435|ref|YP_003753430.1| response regulator, cheY family [Ralstonia solanacearum PSI07] gi|299079495|emb|CBJ52171.1| putative response regulator, CheY family [Ralstonia solanacearum PSI07] Length = 232 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ + +P++ ++ S+ + D G DD + KP E+ ARV A+ RR Sbjct: 66 LKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGTGG 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 GP+ GR ++ +V L RE +LE L++ G+ V+K Q+ + G + Sbjct: 126 GATLVRHGPLAFDQVGRIAYIRDQVVDLSAREIGLLEILLSRAGRLVSKEQLVDHLCG-W 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E V N +E ++ +LRKK+ ++ + + R LGY ++ Sbjct: 185 GEEVSNNAIEVYVHRLRKKI--EVDGIRIATVRGLGYCLE 222 >gi|312115081|ref|YP_004012677.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311220210|gb|ADP71578.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 230 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R +A + P++ ++ + ++G DD V KP E++AR+ A+ RR V Sbjct: 63 LERWRKADIKTPVLILTARDRWSEKVAGINAGADDYVAKPFQMEEVIARIRALLRRSAGV 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E G +R+ + +G L E R+L YLM ++ + V++T++ +Y Sbjct: 123 AKAELECGDLRLDTRTARVTWKGTAVKLTGLEFRLLSYLMHHQSRVVSRTELVDHLYQQ- 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E I +LR+K+ D + + R LGY + Sbjct: 182 DFERDSNTIEVFIGRLRRKIPA----DIIHTVRGLGYCL 216 >gi|326204682|ref|ZP_08194538.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325985249|gb|EGD46089.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 238 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 6/130 (4%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPL 149 G DD + KP RE++ARV A++RR+ + + G I + + R+ + + Sbjct: 99 GADDYITKPFSVRELVARVKALFRRVNTATEPKIDVLSHGEITIDCNRREVYKGSRLLEM 158 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFD 208 P +E +L+ L+ N+GK +++ + I+G FD E V+ HI LR+K+ N Sbjct: 159 PLKEFELLKMLVLNKGKVLSREHLLDKIWG-FDYYGETRTVDVHIRYLRQKIEDNDENPT 217 Query: 209 PVDSKRFLGY 218 +++ R +GY Sbjct: 218 YIETVRGIGY 227 >gi|212218644|ref|YP_002305431.1| transcriptional regulatory protein [Coxiella burnetii CbuK_Q154] gi|212012906|gb|ACJ20286.1| transcriptional regulatory protein [Coxiella burnetii CbuK_Q154] Length = 232 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 17/226 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + DG A G +++ + + SS E I L L+ Sbjct: 13 LLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRSGLD 72 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR + P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 73 VLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR--- 129 Query: 122 SNNRAETGPIRVFSD-GRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIFS 175 S RA+ PI D DP F + RRE +L+ L+ N G+ +++ Q+ Sbjct: 130 SKERAK--PIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQ 187 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +YG + E ++ N +E HI LRK+ KL + + R +GY ++ Sbjct: 188 TLYG-WGENIDSNALEVHIHNLRKRFGAKL----IRTIRGVGYMVE 228 >gi|160915022|ref|ZP_02077235.1| hypothetical protein EUBDOL_01029 [Eubacterium dolichum DSM 3991] gi|158432821|gb|EDP11110.1| hypothetical protein EUBDOL_01029 [Eubacterium dolichum DSM 3991] Length = 232 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 71/135 (52%), Gaps = 4/135 (2%) Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPIRVFSDGRDPEVQGEV 146 L F+ GVDD + KP RE+LARV A +R K R G I + R ++ + Sbjct: 96 LHAFEKGVDDYITKPFSPRELLARVNAHLKRRKGREEPRLVFGDICMDLKRRSILLKEQE 155 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L ++E +LEY ++N+ +++ I + I+G FD + +V+ H+ KLR KL N Sbjct: 156 LELTKKEFDLLEYFISNKEVVLSRDNILNEIWG-FDYDGDTRIVDVHVFKLRSKLAN--S 212 Query: 207 FDPVDSKRFLGYSID 221 + S R +GY I+ Sbjct: 213 NIQIKSMRGIGYVIE 227 >gi|308068364|ref|YP_003869969.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] gi|305857643|gb|ADM69431.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] Length = 243 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 24/215 (11%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE-LPRIIRAHSQVPLIGISDYP 82 V E S FE+ ++RE I L+ G L+ L R+ P+I ++ Sbjct: 29 VDTEDHGSAGFEK----ASRESYDLILLDLMLPGMNGLDILSRLRHQGLTTPIIILTAKN 84 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----------KVSNNRAETGPIR 132 + SG DD + KP E+LARV A+ RR + +++ + G + Sbjct: 85 GEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRTSGGDEGVLSDQKDSSKIQLGELE 144 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 ++ + + + G+ L +E +L YL G + + + +A++G FD + V+ Sbjct: 145 IYPEKYEVILGGQSISLRPKEFEVLLYLSRKPGVVLTRDDLMNAVWG-FDYIGGQRTVDV 203 Query: 193 HISKLRKKLRNKLGFDP----VDSKRFLGYSIDWN 223 H+S LRKKL DP +DS R +GY + N Sbjct: 204 HVSSLRKKLE----LDPDSVHIDSIRGVGYKLVVN 234 >gi|260599895|ref|YP_003212466.1| transcriptional regulatory protein YedW [Cronobacter turicensis z3032] gi|260219072|emb|CBA34427.1| Probable transcriptional regulatory protein yedW [Cronobacter turicensis z3032] Length = 226 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 3/158 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R P++ ++ ++ + + G DD + KP E+LARV A RR + Sbjct: 64 RALRTAKATPVLCLTARDAVSDRVKGLELGADDYLVKPFSFAELLARVRAQLRRHTPAAA 123 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDE 183 + + + + GE L R+E +L L + G+ + +T I S ++G+ FD Sbjct: 124 TLQVADLTLDTARHAASRGGERIALTRQEFTLLWLLASRVGEILPRTLIASEVWGINFDS 183 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E NVV+ I +LRKK+ + +++ R +GY ++ Sbjct: 184 --ETNVVDVAIRRLRKKIDDPFPLKLIETVRGMGYRLN 219 >gi|259418488|ref|ZP_05742406.1| transcriptional activator protein CopR [Silicibacter sp. TrichCH4B] gi|259345883|gb|EEW57727.1| transcriptional activator protein CopR [Silicibacter sp. TrichCH4B] Length = 223 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 5/152 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETG 129 + P++ +S + ++ +G DD + KP E+ AR+ A+ RR LK Sbjct: 72 ETPILFLSAMDGINDRVEGLLAGSDDYLVKPFSFHELSARLVALVRRPPLKTEETVLRVA 131 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 + + R G L RE +LEYL+ N + V +T + A++ FD + N Sbjct: 132 DLEMNLIRRTVSRGGTEVELQPREFSLLEYLIRNADRVVTRTMLLEAVWDFHFDP--KTN 189 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 VVE+HIS+LR K+ + + + R GYS+ Sbjct: 190 VVETHISRLRNKVDKPFATELIHTIRGAGYSL 221 >gi|261408699|ref|YP_003244940.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261285162|gb|ACX67133.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 243 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 19/165 (11%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNR 125 P+I ++ + + + G DD + KP E+LARV+A+ RR +K ++N+ Sbjct: 75 TPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSGHADEVKTTDNQ 134 Query: 126 AET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 G + ++ + + + G+ L +E +L YL G + + + + ++G FD Sbjct: 135 GNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRDDLMNVVWG-FD 193 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSIDWN 223 + V+ H+S LRKKL DP +DS R +GY + N Sbjct: 194 YIGGQRTVDVHVSSLRKKLE----LDPESVHIDSIRGVGYKLVVN 234 >gi|154251384|ref|YP_001412208.1| two component transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154155334|gb|ABS62551.1| two component transcriptional regulator, winged helix family [Parvibaculum lavamentivorans DS-1] Length = 223 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 FD+G DD V KP E+LAR+ A+ RR +++ E GP+RV + V G L Sbjct: 91 FDAGADDYVAKPFFMEEVLARLRALLRRATGHASSELECGPVRVDTRSSRVTVNGRAIKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L Y+M ++G+ +++T++ +Y FD + N +E + +LR+ KLG D Sbjct: 151 TSLEYRLLSYMMHHQGRVISRTELVEHLYDQDFDR--DSNTIEVFVGRLRR----KLGKD 204 Query: 209 PVDSKRFLGYSI 220 +++ R LGY + Sbjct: 205 VIETVRGLGYRL 216 >gi|157371577|ref|YP_001479566.1| two component transcriptional regulator [Serratia proteamaculans 568] gi|157323341|gb|ABV42438.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] Length = 224 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 83/160 (51%), Gaps = 5/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ + +P++ ++ + + + G DD + KP E+ AR+ A+ RR + V Sbjct: 63 LARLRKRGQDLPVLLLTARTDVADRVKGLNLGADDYLTKPFELDELEARIRALLRRSVGV 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + +G ++ + L RE +L L+ RG+ VAK Q+F ++ L Sbjct: 123 TQQALQYGALTYHDEGYF-QLDDKPLQLTPRELAVLTALIHRRGRPVAKQQLFEQVFTLS 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DEA E+ +E ++ +LRKKL+ + + R LGYS++ Sbjct: 182 DEANPES-IELYVHRLRKKLQGS--NVAIITLRGLGYSLE 218 >gi|322383919|ref|ZP_08057649.1| two-component response regulator YclK-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151396|gb|EFX44583.1| two-component response regulator YclK-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 244 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 6/147 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----- 117 + R IR S +P+I ++ TL F+ G DD V KP +LAR + Sbjct: 81 VCRRIRKTSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLESRYAI 140 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + N + I V R +V G+ L E IL YLM N+G + + Q+ + I Sbjct: 141 EEETNGNSLSSCGIHVDFPSRTVKVDGKDINLTYTEFEILTYLMHNQGIVITREQLITKI 200 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 +G ++ + ++ V SHI LR KL +K Sbjct: 201 WG-YEFSGDDRTVNSHIRNLRTKLGDK 226 >gi|313891011|ref|ZP_07824632.1| putative DNA-binding response regulator [Streptococcus pseudoporcinus SPIN 20026] gi|313120635|gb|EFR43753.1| putative DNA-binding response regulator [Streptococcus pseudoporcinus SPIN 20026] Length = 224 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 78/157 (49%), Gaps = 2/157 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + +R S +P+I ++ + + L F++G D+ + KP + AR+ +++R + Sbjct: 60 EYLKWLREFSSIPVIMLTVKNADEYVLKGFENGADEYITKPFSLPVLKARIDNLFKRKDM 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 SNN + + ++ E L R+E +LE L+ N+ + + +I +++G Sbjct: 120 SNNEIVFHGLSLNLTSMTAKLNNENLELNRQEFAVLELLLENKNINLIREKIIDSVWGYD 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V +N + I +LR KL++ + + + R LGY Sbjct: 180 LYEVNDNTLTVTIKRLRNKLKDYGKY--IKTVRGLGY 214 >gi|229070657|ref|ZP_04203894.1| Two-component response regulator [Bacillus cereus F65185] gi|228712479|gb|EEL64417.1| Two-component response regulator [Bacillus cereus F65185] Length = 228 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 7/148 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY--RRLK 120 + R IR S VP+I ++ TL F+ G DD V KP +LAR + R Sbjct: 64 VCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYSS 123 Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N AE + I V R + GE L E I+ YLM N+G +++ Q+ + Sbjct: 124 AVNVPAEDTLTSSGIHVHFPSRTVTIDGEDINLTHTEFEIVTYLMRNQGIVISREQLINK 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204 I+G ++ A ++ V SHI LR KL K Sbjct: 184 IWG-YEFAGDDRTVNSHIRNLRHKLGQK 210 >gi|229198983|ref|ZP_04325670.1| Two-component response regulator [Bacillus cereus m1293] gi|228584529|gb|EEK42660.1| Two-component response regulator [Bacillus cereus m1293] Length = 229 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 8/152 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 64 VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123 Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I V R V L E IL YLM N+G + + Q+ S Sbjct: 124 KRLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLIS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 I+G ++ A ++ V SHI LR KL K + Sbjct: 184 KIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|255690604|ref|ZP_05414279.1| DNA-binding response regulator VicR [Bacteroides finegoldii DSM 17565] gi|260623875|gb|EEX46746.1| DNA-binding response regulator VicR [Bacteroides finegoldii DSM 17565] Length = 228 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 8/140 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN--- 124 + ++VP+I I+ + T+ F+ G DD ++KP RE++ARV A+ RR + Sbjct: 72 KKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTAAAETERV 131 Query: 125 --RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 R + + + + E PL ++E IL L+ N+G+ ++ I + I+ D Sbjct: 132 PERLTYQTLVIDITKKKVSIDEEEVPLTKKEFEILLLLVQNKGRVFSREDILARIWS--D 189 Query: 183 EA-VEENVVESHISKLRKKL 201 E V + ++ +I++LRKK+ Sbjct: 190 EVYVLDRTIDVNITRLRKKI 209 >gi|225407891|ref|ZP_03761080.1| hypothetical protein CLOSTASPAR_05112 [Clostridium asparagiforme DSM 15981] gi|225042570|gb|EEG52816.1| hypothetical protein CLOSTASPAR_05112 [Clostridium asparagiforme DSM 15981] Length = 260 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 8/130 (6%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLP 150 G DD + KP + A+V A RR + + A GP R D QGE L Sbjct: 119 GADDYITKPFSTMVLCAKVKACLRRSSLLSGHANELIAGPFRYICDEMRLFKQGEEIFLS 178 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 +E +++Y ++N+ K + K QI+ ++ D+ V++N + HI +LR K+ + G PV Sbjct: 179 GKECLLMKYFLSNQNKILTKDQIYRYVWN--DDFVDDNTIMVHIRRLRMKIEDSPGH-PV 235 Query: 211 DSK--RFLGY 218 K R +GY Sbjct: 236 YLKNIRGMGY 245 >gi|219872086|ref|YP_002476461.1| two component transcriptional regulator/response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Haemophilus parasuis SH0165] gi|219692290|gb|ACL33513.1| two component transcriptional regulator/response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Haemophilus parasuis SH0165] Length = 223 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 5/202 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D L+ +G G S++ F + SSA D ++ L G +V Sbjct: 3 ILLIEDDPLIGEGLKLGLSKSGFSVDWFTDGKTGLDALSSAPYDAVVLDLTLPKMDGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L+ R RA+ VP++ ++ +L + G DD + KP E++AR+ A I RR Sbjct: 63 LQSWR--RANQDVPVLILTARDTLDERIMGLQRGADDYLCKPFALAEVVARLQALIRRRY 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N E ++ + R ++ + L RE +LE M N+ + + ++ I +Y Sbjct: 121 GHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLELFMHNKDRVLTRSFIEEKLYT 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 +D+ V N +E HI LR+KL Sbjct: 181 -WDDEVSSNALEVHIYNLRQKL 201 >gi|213158597|ref|YP_002319895.1| two-component heavy metal response regulator protein [Acinetobacter baumannii AB0057] gi|301344826|ref|ZP_07225567.1| two-component heavy metal response regulator protein [Acinetobacter baumannii AB056] gi|301596622|ref|ZP_07241630.1| two-component heavy metal response regulator protein [Acinetobacter baumannii AB059] gi|213057757|gb|ACJ42659.1| two-component heavy metal response regulator protein [Acinetobacter baumannii AB0057] Length = 223 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 80/158 (50%), Gaps = 4/158 (2%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123 +++R S++P+I ++ + + + G DD + KP + E+LAR+ ++ RR + + Sbjct: 64 QVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQYLQE 123 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182 N +++ G G + L + E +L YL+ N+ + V + QI S ++ + FD Sbjct: 124 NELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWNINFD 183 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N ++ + +LR K+ + + + R LGY I Sbjct: 184 --TDTNFIDVAVRRLRSKIDEEYEPKLIHTIRGLGYKI 219 >gi|160916112|ref|ZP_02078319.1| hypothetical protein EUBDOL_02139 [Eubacterium dolichum DSM 3991] gi|158431836|gb|EDP10125.1| hypothetical protein EUBDOL_02139 [Eubacterium dolichum DSM 3991] Length = 220 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 9/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S +P+I ++ S L + G DD V KP + + +LAR+A + +R S Sbjct: 63 IRKKSNLPIIVVTSRDSEMDELISMNLGADDFVTKPYNLQILLARIARVLQR---SYEHE 119 Query: 127 ETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +++ D +G+ L + E RI+ L N+ K V++ ++ ++ Sbjct: 120 NSNILKIHDIALDISKSTLSYKGKSCDLTKNELRIMHCLFINKNKIVSRNELMQHMWDC- 178 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V++N + +I++LRKKL D + +KR LGY I Sbjct: 179 DLFVDDNTLTVNINRLRKKLELLQLDDLIVTKRGLGYII 217 >gi|160880215|ref|YP_001559183.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428881|gb|ABX42444.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 223 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 79/159 (49%), Gaps = 1/159 (0%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I++ P+I ++ + + D G DD ++KP RE+L+R+ ++ RR Sbjct: 63 VCKAIKSMGDTPVIFVTASGDEFSVVAGLDMGADDYISKPFRPRELLSRIKSVLRRCGKV 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + E I+V ++ QG L E R+L ++NRG +++ ++ I+ + Sbjct: 123 QSVIEIEGIQVDTEKGLVLKQGNEIFLSALEYRLLLVFLSNRGTVISRNKLLEEIWDIAG 182 Query: 183 EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + V +N + ++ +LR+K+ N + + R LGY + Sbjct: 183 DFVNDNTLTVYVKRLREKIEDNPQEPTIIKTVRGLGYKV 221 >gi|3237372|gb|AAC38775.1| response regulator homolog [Providencia stuartii] Length = 193 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 2/152 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P++ ++ S Q + +SG DD V KP H E++AR+ A+ RR +++ E Sbjct: 42 IPVLVLTARESWQEKVQALNSGADDYVTKPFHLEELVARMQALMRRNSGLASQVLELDGF 101 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + ++ V GE L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 102 VIDLSRKEFTVNGEPVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLYP-DAELRESHTID 160 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + +LRKK++ D + + R GY D N Sbjct: 161 VLMGRLRKKIQQFHANDVIVTVRGQGYRFDVN 192 >gi|89097745|ref|ZP_01170633.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911] gi|89087604|gb|EAR66717.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911] Length = 233 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 21/200 (10%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIR 68 +K+GY F G EGF++ E W D+ ++ L + G + L R IR Sbjct: 20 FMKEGYTGRFVHSG--QEGFDAFNKESW-------DLVIVDWMLPVMDG---VTLCRKIR 67 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 S VP+I ++ S + + G DD V KP ++AR+ A+ RR + +++ E Sbjct: 68 ELSTVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLALMARIKAVTRRYQADSSKQEE 127 Query: 129 GP------IRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ D R+ +G+ L +E +L Y + N + ++ Q+ ++G + Sbjct: 128 ANYISSQFFKISKDTREVLYKGQPLNNLTPKEFDLLYYFVKNPRQVFSREQLLDRVWG-Y 186 Query: 182 DEAVEENVVESHISKLRKKL 201 +E V+ HI +LRKK+ Sbjct: 187 QFYGDERTVDVHIKRLRKKI 206 >gi|89096579|ref|ZP_01169471.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088594|gb|EAR67703.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 228 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 8/142 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +P+I +S + SG DD ++KP + E++ARV + RR K N + Sbjct: 68 IREEQHMPIIMLSAKSEDMDKIQGLTSGADDYISKPFNPLELIARVKSHLRRYKKYNTES 127 Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E G + + +D R G+ L +E ILE L N+G ++ ++I+ +++ Sbjct: 128 EADKNVIVIGSLEINTDTRLVYAGGKEIRLTPKEFDILELLARNKGIVMSVSKIYESVWK 187 Query: 180 LFDEAVEENVVESHISKLRKKL 201 D +N V HI+K+R+K+ Sbjct: 188 -EDLLKSDNTVMVHITKIREKI 208 >gi|325003064|ref|ZP_08124176.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 219 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S+VP++ I+ + + +G DD + KP+ E+LAR+ A+ RR Sbjct: 64 REIRERSRVPILAITGRGDVAARVQGLRAGADDYLVKPVSTDELLARIDAVLRR-STGGA 122 Query: 125 RAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 A T G + V + R G+ L R+E +L L G + +T++ ++G+ Sbjct: 123 VASTVAVGDVVVDLERRSVTAAGDEVALTRKEFDLLAALARREGAVLPRTELLEQVWGVA 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + +E+H++ LR KL + + V + R +GY + Sbjct: 183 DGSAART-LEAHVASLRSKLGAR---EVVVTVRGVGYRL 217 >gi|317062130|ref|ZP_07926615.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|313687806|gb|EFS24641.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 225 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 84/161 (52%), Gaps = 7/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LK 120 + R IR SQVP+I ++ L F+ D+ + KP + + ++A+V A+ RR Sbjct: 67 VCRKIREESQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGKI 126 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V E G + + + R+ ++ V L +E +L + + N+G +++ +I ++++G Sbjct: 127 VDKTYLEFGDLVIDTSKREVKLGDVVLELTPKEYDLLYFFIENKGLALSREKILNSVWG- 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + V++HI K+LR K+G + + + R GY + Sbjct: 186 WDYFGDSRTVDTHI----KRLRKKIGDNFIQTVRGFGYKFE 222 >gi|313672415|ref|YP_004050526.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] gi|312939171|gb|ADR18363.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] Length = 231 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 83/168 (49%), Gaps = 8/168 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + IR +S++P++ +S S+ + + G DD + KP + E++AR+ AI RR Sbjct: 63 QLCKAIRKNSELPILILSAKESVTDKVLCLEYGADDYITKPFQNIELIARIKAILRRCAC 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-------EVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E ++ +V+ EV +E I YL+ N+GK V++ ++ Sbjct: 123 NYGTEEEHTSILYYKNFIIDVENMIVKRDDEVINFTPKEFEIFLYLVRNKGKIVSRDKMI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 + ++G + ++ HI +R+K+ +N G + + +GY ++ Sbjct: 183 NELWGKDNLYKWSRSIDVHIQHIRQKIEKNSKGHLYLKTISGVGYKLE 230 >gi|256848492|ref|ZP_05553934.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] gi|256714759|gb|EEU29738.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] Length = 235 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 9/151 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ + +RA P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 62 LEVAKRVRAKHNTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQD 121 Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + NN + G + + D +G+ L RE +L YL + G+ + + Q Sbjct: 122 AANTPNAETENNDIKIGALTIHPDAYTVTKRGDNINLTHREFELLHYLAQHIGQVIKREQ 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ + +LR+K+ + Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIED 211 >gi|229060336|ref|ZP_04197702.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH603] gi|228718926|gb|EEL70543.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH603] Length = 224 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 9/164 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +RA P+I ++ S+ + DSG DD + KP E+LAR+ I+RR Sbjct: 61 LEVCRRLRATKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRR-- 118 Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + F D R E L +E +L M N + + + + Sbjct: 119 EENTEQKHASFLSFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDILL 178 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G +D VE N+V+ ++ LR KL + + + + R GY Sbjct: 179 DQVWG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGY 221 >gi|225174725|ref|ZP_03728723.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225169852|gb|EEG78648.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 236 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 103/206 (50%), Gaps = 13/206 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEK 59 +++DD +V + + L+G+ EGF + + ++ L RE+ + ++ G+ Sbjct: 8 LVVDDDHIVLE-LVKLYGER----EGFEVIVVSDGDQVLPIYDRENPDVVILDIMLPGKD 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L R +R +P+I ++ + + G DD ++KP RE++AR+ A+ RR Sbjct: 63 GLTLCRSLREIRMIPIIMLTAKGEEADRVLGLEMGADDYISKPFSPRELVARIKAVLRRT 122 Query: 120 K----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + V+N + + + + +D R V E L RE +L +L N + + ++ + Sbjct: 123 QAVEGVTNWKLKYNGLEIHADIRRVLVDREHIELTPREFDLLYHLAKNPQRVFTRDELLA 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 A++G +D ++ V+ HI +LR KL Sbjct: 183 AVWG-YDYFGDQRTVDVHIRRLRTKL 207 >gi|222147387|ref|YP_002548344.1| phosphate regulon transcriptional regulatory protein PhoB [Agrobacterium vitis S4] gi|221734377|gb|ACM35340.1| phosphate regulon transcriptional regulatory protein PhoB [Agrobacterium vitis S4] Length = 227 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R ++P+I ++ + +G DD V KP E++ARV A+ R Sbjct: 62 IELCRRLRMRPDTERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLR 121 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R K V ++ G I + + + L E R+LE+LM + G+ +++Q+ Sbjct: 122 RAKPEVLSSLLRCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMTSPGRVFSRSQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK L D + + R GYS++ Sbjct: 182 GVWG-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226 >gi|154484485|ref|ZP_02026933.1| hypothetical protein EUBVEN_02199 [Eubacterium ventriosum ATCC 27560] gi|149734333|gb|EDM50250.1| hypothetical protein EUBVEN_02199 [Eubacterium ventriosum ATCC 27560] Length = 234 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 23/194 (11%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI--------IRAHSQVPL 75 +S EG+N ++ + +++ I+ LI + +PR+ IR S +P+ Sbjct: 25 LSKEGYNVIKAYDGMEAMEILKKEDIQLLLID-----VMMPRLDGIRATLKIREKSSIPI 79 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-------T 128 I +S + D G DD + KP + E++ARV + RR AE Sbjct: 80 IILSAKSEDSDKIIGLDVGADDYITKPFNPLELIARVKSQIRRYTRLGTIAEPKSNVYSV 139 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV-EE 187 G + + + ++ +V GE+ L E IL +L+ N G+ QI+ A++ +EAV + Sbjct: 140 GGLEIDDECKEVKVDGEIVKLTPFEYNILLFLVKNPGRVFTIDQIYEAVWN--EEAVAAD 197 Query: 188 NVVESHISKLRKKL 201 N V HI +R+K+ Sbjct: 198 NTVAVHIRHIREKI 211 >gi|238785377|ref|ZP_04629364.1| KDP operon transcriptional regulatory protein kdpE [Yersinia bercovieri ATCC 43970] gi|238713704|gb|EEQ05729.1| KDP operon transcriptional regulatory protein kdpE [Yersinia bercovieri ATCC 43970] Length = 175 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 20/159 (12%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S +P+I +S S + + D+G DD ++KP E+LARV RR + + Sbjct: 17 LRQWSAIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRR---HSGGS 73 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + P+ F+D R GE L E R+L L+AN GK + + Q+ S ++G Sbjct: 74 QESPLVNFADISVDLINRQVTRAGENLHLTPIEFRLLSALLANAGKVITQRQLLSQVWG- 132 Query: 181 FDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216 N VE H LR LR KL DP K L Sbjct: 133 ------PNYVE-HSHYLRIYMGHLRQKLEADPTRPKHLL 164 >gi|107028754|ref|YP_625849.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116690087|ref|YP_835710.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170733421|ref|YP_001765368.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105897918|gb|ABF80876.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116648176|gb|ABK08817.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|169816663|gb|ACA91246.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 224 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 9/154 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128 P++ +S + + +G DD + KP E+ AR+ + RR + S +T Sbjct: 73 TPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQASGVPQQTLLKV 132 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187 G + + R + PL E R+LE++M N G+ + +T +F A++G FD Sbjct: 133 GALELDLISRCARRGADEIPLLPTEFRVLEFMMRNAGQTITRTMLFEAVWGYHFDPGT-- 190 Query: 188 NVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 N+++ H+ +LRKK+ + G +P + + R GY + Sbjct: 191 NLIDVHMGRLRKKI-DPPGANPMIQTVRGSGYML 223 >gi|300932570|ref|ZP_07147826.1| two-component system response regulator TcsR5 [Corynebacterium resistens DSM 45100] Length = 231 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 109/222 (49%), Gaps = 22/222 (9%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R+L+ +GY + DG +LE + +S R D++ ++ + + LE+ R + Sbjct: 18 RSLIFNGYTVVLASDGA-----EALE----IIASERPDLAILDVMMPRRDG--LEVCREL 66 Query: 68 RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125 R+H +P++ ++ ++ + D+G DD + KP E+LAR +++RR + + N Sbjct: 67 RSHGDDIPILLLTARDAVSERVAGLDAGADDYLPKPFALEELLARTRSLFRRATRPAINE 126 Query: 126 AETG-PIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A++ P+R +PE + EV L R E +LE L+ N K +++ I ++ Sbjct: 127 AQSHEPLRFEDLTLNPETR-EVRRDERQISLTRTEFALLELLIRNPRKVLSRNNILEEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D N +E +I LRKK + + R +GY + Sbjct: 186 G-YDFPTSGNALEVYIGYLRKKTEQDGESRLIHTVRGVGYVL 226 >gi|295702506|ref|YP_003595581.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294800165|gb|ADF37231.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 230 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 10/168 (5%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IRA+ Q P+I ++ +L + D G +D + KP E+ AR+ ++ R Sbjct: 63 LEVLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARI-RVWLRH 121 Query: 120 KVSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S + AE G + V R+ + E L +E +L Y++ N+ + ++ Q Sbjct: 122 PASTSTAEQETATLQLGNLVVNEKTREVTRENEAIELTPKEYDLLVYMLQNKNQVLSFEQ 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + ++G FD + N+V +I LRKK+ + + R +GY + Sbjct: 182 LLTNVWG-FDYYGDTNIVYVYIRYLRKKIDASFSTPYIQTVRGVGYML 228 >gi|225874253|ref|YP_002755712.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] gi|225794322|gb|ACO34412.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] Length = 230 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 2/149 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 P++ ++ + ++ ++G DD + KP E+LAR A+ RR K VS+ G + Sbjct: 74 TPVLVLTAVAEKASVIELLNAGADDYLAKPFDLGELLARAKALIRRGKGVSHPVINIGAL 133 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + + G L E R+LE+L V+K + +Y ++ NV+E Sbjct: 134 VLDTVEKSVTCHGIPIELSPTEYRVLEFLGHRPRSVVSKQTLLEHLYD-YNWEHHSNVIE 192 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +HIS LR+KL + G +++ R GY + Sbjct: 193 AHISNLRRKLNQQEGDAWIETLRGRGYRL 221 >gi|225419690|ref|ZP_03761993.1| hypothetical protein CLOSTASPAR_06028 [Clostridium asparagiforme DSM 15981] gi|225041675|gb|EEG51921.1| hypothetical protein CLOSTASPAR_06028 [Clostridium asparagiforme DSM 15981] Length = 223 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 4/158 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I IS + + G DD + KP + A+V A+ RR ++ Sbjct: 67 IRQCSKVPVIFISSAADNLNIVMAMNMGGDDFIAKPFDLDVLTAKVQAMLRRTYEFAGQS 126 Query: 127 ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 R + D + G PL R E+RIL+ L+ N+G+ V++ + ++ D Sbjct: 127 RLLEHRGAVLNVDDATLTIAGNKLPLTRNEQRILQTLLENKGRIVSRDHLMLRLWE-SDS 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V++N + +I++LRKKL + +K+ GY ID Sbjct: 186 YVDDNTLTVNITRLRKKLEQAGLPGFILTKKGSGYLID 223 >gi|239813055|ref|YP_002941965.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239799632|gb|ACS16699.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 229 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 1/130 (0%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 + P++ ++ + + D+G DD + KP E+ AR+ A+ RR K + + G + Sbjct: 80 RTPVLVLTARGRTEERIAGLDAGADDYLGKPFDLAEVEARLRALVRRAKGTEDIVLLGQL 139 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 ++ R LP RE +L LM+ G+ V+K + + FDE++ +N +E Sbjct: 140 KLDRKARRFSTASGPLDLPAREFEVLWELMSPPGRTVSKRALSDKLSS-FDESLGDNALE 198 Query: 192 SHISKLRKKL 201 + IS+LRKKL Sbjct: 199 AFISRLRKKL 208 >gi|170760192|ref|YP_001788883.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407181|gb|ACA55592.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 228 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 15/169 (8%) Query: 47 SAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 A E FL K + VL LP I IR S +P+I ++ + + G Sbjct: 40 EAQEGFLEYKPDLVLLDIMLPHIDGVDVLKWIRKDSTIPIIMLTAKGDTFDKVLALELGA 99 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRR 152 DD + KP +E+LARV A+ RR V N E + + + + + +P + Sbjct: 100 DDYIVKPFEPKELLARVKAVLRRYNVDNENKEALNFEQLTIDVNSYTVVYKNKEIKMPPK 159 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E +L YL N+ + + Q+ ++G +D + V+ HI +LR+KL Sbjct: 160 EFELLYYLARNKNRVFTREQLLCEVWG-YDYPGDSRTVDVHIKRLREKL 207 >gi|163858337|ref|YP_001632635.1| two-component system response regulator [Bordetella petrii DSM 12804] gi|163262065|emb|CAP44367.1| two-component system response regulator [Bordetella petrii] Length = 236 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 87/166 (52%), Gaps = 6/166 (3%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL+ R R + +P++ ++ +L L+ F G DD + KP E+ AR+ A+ Sbjct: 68 GYQVLQTLRAERRQA-IPVLILTARDALDDKLEGFSHGADDYLTKPFALAEVQARLLALI 126 Query: 117 RRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R + V + E GP++ R V G+ L R+ +I+E L+ + G+ V++ ++ Sbjct: 127 HRAQGAVVDAVREFGPLQFDGRTRAVLVAGQPVRLTRKSGQIVEALLRDPGRIVSREELE 186 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 S ++G DE + + S + LR+ L + GFD +++ +G+ + Sbjct: 187 SVLWG--DEPPSPDALRSQMHLLRRALADA-GFDGIETVHGIGWRL 229 >gi|88855714|ref|ZP_01130377.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88815038|gb|EAR24897.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 230 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 3/129 (2%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPR 151 G DD V KP EI+AR+ AI RR + G + + D + + E L Sbjct: 98 GGDDYVTKPFSLDEIVARIKAILRRTMQDDEETIIRAGDLTMDQDTHEVSIGSEQIELSP 157 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 E ++L YLM N + ++K QI ++ +D + +VES+IS LR+KL + Sbjct: 158 TEFKLLRYLMLNPNRVLSKAQILDHVWE-YDFNGDAGIVESYISYLRRKLDIHTEEPLIQ 216 Query: 212 SKRFLGYSI 220 +KR GY + Sbjct: 217 TKRGFGYML 225 >gi|297529494|ref|YP_003670769.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297252746|gb|ADI26192.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 228 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 89/166 (53%), Gaps = 21/166 (12%) Query: 65 RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R IRAHS VP++ +S D+P+ + G DD + KP H ++A++ A+ RR+ Sbjct: 64 RQIRAHSNVPILFLSSRDHPT--DMVMSMQLGADDYIQKPFHFDVLIAKIQALLRRVYNY 121 Query: 123 NNRAETGPIRVFS------DGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GP+++ + D V E L + E IL++L+A + + VA+T++ Sbjct: 122 N----AGPVQLQTWCGATVDYEKSTVSNEHGTVELTKNELLILKHLLAKKNQIVARTELI 177 Query: 175 SAIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 ++ DE V +N + ++++LRKKL ++LG +++K GY Sbjct: 178 KRLWE--DERFVSDNTLTVNVNRLRKKL-DELGLGRFIETKVGQGY 220 >gi|297191089|ref|ZP_06908487.1| response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297150757|gb|EDY65692.2| response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 239 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 8/150 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R+IR S+VP++ + T+ ++G DD + KP ++ AR+AA+ RR Sbjct: 70 LDVLRMIRGISRVPVLVATARDDDTETIRLLNAGADDYMVKPFSGGQLAARLAAVLRRSG 129 Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + P+ R+ R + G L RRE +L YL A+ + +++ +I Sbjct: 130 PAVDAVDRQPVVQVGELRIDPRARTAHLAGRELALTRREFDLLAYLAAHADQVMSRKRIL 189 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK 204 + ++ +E+ V+ H+S LR+K+ K Sbjct: 190 AEVWQ--QPYLEDQTVDVHLSALRRKMGEK 217 >gi|296103156|ref|YP_003613302.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057615|gb|ADF62353.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 719 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 22/211 (10%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 +GYI DG + LE + W A+ L+ LE+ R IR ++ Sbjct: 24 EGYIITHEPDGGN--ALQCLEKQPW---------DAVILDLMLPNVDGLEICRRIRQITR 72 Query: 73 -VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 +P+I IS S + ++G DD + KP +E++AR+ A++RR + G I Sbjct: 73 YLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQAMGQAQSAGNI 132 Query: 132 RVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + DP + G++ L RE +L + + G+ ++ + ++G E Sbjct: 133 QAHGLTIDPLARSVLLHGQIVDLTPREFELLYFFARHPGEVFSRLALLEQVWGYQHEGY- 191 Query: 187 ENVVESHISKLRKKLRNKL----GFDPVDSK 213 E+ V +HI++LR K+ L F P K Sbjct: 192 EHTVNTHINRLRIKIEKTLPSRRSFAPCGEK 222 >gi|294678530|ref|YP_003579145.1| winged helix family two component transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477350|gb|ADE86738.1| two component transcriptional regulator, winged helix family [Rhodobacter capsulatus SB 1003] Length = 219 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 6/149 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPI 131 P+I ++ + ++ ++G DD + KP E+ AR+ ++ RR + N G + Sbjct: 73 TPVIILTALDQVSDRIEGLNAGADDYLVKPFDLAELTARIGSVARRYAGNPNPVIRLGEL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + R+ G+ L RE + E L++ G+ K + +Y FD+ + N +E Sbjct: 133 TIDLAARELRRAGKAVALTAREWALFELLLSRPGQIFPKRDLEDRLYS-FDDEIGSNTLE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 H+S+LRK KLG ++++R LGY + Sbjct: 192 VHVSRLRK----KLGAQVIETERGLGYRL 216 >gi|257467841|ref|ZP_05631937.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 221 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 84/161 (52%), Gaps = 7/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LK 120 + R IR SQVP+I ++ L F+ D+ + KP + + ++A+V A+ RR Sbjct: 63 VCRKIREESQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGKI 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V E G + + + R+ ++ V L +E +L + + N+G +++ +I ++++G Sbjct: 123 VDKTYLEFGDLVIDTSKREVKLGDVVLELTPKEYDLLYFFIENKGLALSREKILNSVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + V++HI K+LR K+G + + + R GY + Sbjct: 182 WDYFGDSRTVDTHI----KRLRKKIGDNFIQTVRGFGYKFE 218 >gi|225025447|ref|ZP_03714639.1| hypothetical protein EIKCOROL_02345 [Eikenella corrodens ATCC 23834] gi|224941731|gb|EEG22940.1| hypothetical protein EIKCOROL_02345 [Eikenella corrodens ATCC 23834] Length = 226 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + +R P+I ++ + + G DD + KP RE++ARV A+ RR + Sbjct: 63 ELLKTLRPQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRTQ- 121 Query: 122 SNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + A+T + V+ D QG PL + E R+L L+ G+ ++ ++ +A++ Sbjct: 122 TRPAAKTESVPVWHDDVPACCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELLTAMF 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 G + + + + +HI LR KLR + + + + LGYS + Sbjct: 182 G-GNRPSDPHTINTHIRALRHKLRAAGIADEHIRTHHGLGYSFN 224 >gi|254420558|ref|ZP_05034282.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] gi|196186735|gb|EDX81711.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] Length = 226 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 8/160 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRLKV 121 L R R P++ ++ + + FD+G DD + KP H E + A + R + Sbjct: 63 LERWRREGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALLRRSAGI 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 ++ G +R+ V GE L E R+L Y+M ++G+ +++T++ +Y Sbjct: 123 ASATLSCGGLRLDPRAARANVNGEPLRLTSLEYRLLHYMMMHQGRVISRTELVEHLYDQD 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + N +E I +LRK K+G D +++ R LGY + Sbjct: 183 FDR--DSNTIEVFIGRLRK----KIGSDRIETVRGLGYRL 216 >gi|218233709|ref|YP_002367381.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229073107|ref|ZP_04206291.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus F65185] gi|229079836|ref|ZP_04212368.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus Rock4-2] gi|218161666|gb|ACK61658.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228703420|gb|EEL55874.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus Rock4-2] gi|228710015|gb|EEL62005.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus F65185] Length = 224 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 5/162 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +RA P+I ++ S+ + DSG DD + KP E+LAR+ I+RR + Sbjct: 61 LEVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREE 120 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N+ + +++ + R E L +E +L M N + + + + Sbjct: 121 HIENKQVSFLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G +D VE N+V+ ++ LR KL + + + + R GY Sbjct: 181 VWG-YDAIVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGY 221 >gi|157692001|ref|YP_001486463.1| response regulator [Bacillus pumilus SAFR-032] gi|157680759|gb|ABV61903.1| possible response regulator [Bacillus pumilus SAFR-032] Length = 228 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 5/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + ++ P++ I+ S+ + D G +D + KP E+LAR+ A R Sbjct: 66 LRRVRKTNTATPIMLITARDSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLRLNINE 125 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ET + V RD + G++ L RE +L +L+ ++ + + + Q+ +A++ Sbjct: 126 QQEKETELSIADLTVNEKTRDIQRAGQMLELTPREYDLLVHLLKHQQQVLTRDQLLTAVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G FD + NVV+ +I LRKK+ + + R +GY Sbjct: 186 G-FDYFGDTNVVDVYIRYLRKKVDYPFEKQLIHTVRGVGY 224 >gi|109453246|gb|ABG34103.1| PhoP [Salmonella enterica subsp. enterica] gi|109453248|gb|ABG34104.1| PhoP [Salmonella enterica subsp. enterica] gi|109453250|gb|ABG34105.1| PhoP [Salmonella enterica subsp. enterica] gi|109453252|gb|ABG34106.1| PhoP [Salmonella enterica subsp. enterica] gi|109453256|gb|ABG34108.1| PhoP [Salmonella enterica subsp. enterica] gi|109453260|gb|ABG34110.1| PhoP [Salmonella enterica subsp. enterica] gi|109453262|gb|ABG34111.1| PhoP [Salmonella enterica subsp. enterica] gi|109453264|gb|ABG34112.1| PhoP [Salmonella enterica subsp. enterica] gi|109453266|gb|ABG34113.1| PhoP [Salmonella enterica subsp. enterica] gi|109453268|gb|ABG34114.1| PhoP [Salmonella enterica subsp. salamae] gi|109453270|gb|ABG34115.1| PhoP [Salmonella enterica subsp. salamae] gi|109453272|gb|ABG34116.1| PhoP [Salmonella enterica subsp. salamae] gi|109453274|gb|ABG34117.1| PhoP [Salmonella enterica subsp. salamae] gi|109453276|gb|ABG34118.1| PhoP [Salmonella enterica subsp. salamae] gi|109453278|gb|ABG34119.1| PhoP [Salmonella enterica subsp. salamae] gi|109453280|gb|ABG34120.1| PhoP [Salmonella enterica subsp. salamae] gi|109453284|gb|ABG34122.1| PhoP [Salmonella enterica subsp. salamae] gi|109453286|gb|ABG34123.1| PhoP [Salmonella enterica subsp. salamae] gi|109453308|gb|ABG34134.1| PhoP [Salmonella enterica subsp. diarizonae] gi|109453310|gb|ABG34135.1| PhoP [Salmonella enterica subsp. diarizonae] gi|109453314|gb|ABG34137.1| PhoP [Salmonella enterica subsp. diarizonae] gi|109453324|gb|ABG34142.1| PhoP [Salmonella enterica subsp. diarizonae] gi|109453328|gb|ABG34144.1| PhoP [Salmonella enterica subsp. diarizonae] gi|109453330|gb|ABG34145.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453332|gb|ABG34146.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453334|gb|ABG34147.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453336|gb|ABG34148.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453338|gb|ABG34149.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453340|gb|ABG34150.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453342|gb|ABG34151.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453344|gb|ABG34152.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453346|gb|ABG34153.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453348|gb|ABG34154.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453350|gb|ABG34155.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453352|gb|ABG34156.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453354|gb|ABG34157.1| PhoP [Salmonella enterica subsp. houtenae] gi|109453356|gb|ABG34158.1| PhoP [Salmonella enterica subsp. indica] gi|109453358|gb|ABG34159.1| PhoP [Salmonella enterica subsp. indica] gi|109453360|gb|ABG34160.1| PhoP [Salmonella enterica subsp. indica] gi|109453362|gb|ABG34161.1| PhoP [Salmonella enterica subsp. indica] gi|109453364|gb|ABG34162.1| PhoP [Salmonella enterica subsp. indica] gi|109453366|gb|ABG34163.1| PhoP [Salmonella enterica subsp. indica] gi|109453368|gb|ABG34164.1| PhoP [Salmonella bongori] gi|109453370|gb|ABG34165.1| PhoP [Salmonella bongori] gi|109453372|gb|ABG34166.1| PhoP [Salmonella bongori] gi|109453376|gb|ABG34168.1| PhoP [Salmonella bongori] gi|109453378|gb|ABG34169.1| PhoP [Salmonella bongori] Length = 213 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 5/212 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ ++ + D++ ++ L E L Sbjct: 4 LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R+ +P++ ++ Q ++ SG DD V KP H E++AR+ A+ RR Sbjct: 62 LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ V EV L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E E + ++ + +LRKK++ + D + + Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHDVITT 212 >gi|149195385|ref|ZP_01872470.1| response regulator receiver domain protein (CheY-like) [Caminibacter mediatlanticus TB-2] gi|149134476|gb|EDM22967.1| response regulator receiver domain protein (CheY-like) [Caminibacter mediatlanticus TB-2] Length = 222 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 6/131 (4%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPR 151 S DD + KP E++AR+ A++RR K+ N + G + + D ++ + G+ L Sbjct: 92 SVADDYLTKPFEFEELIARLKALFRRNKKLPENIIKVGDLEMNLDTKEVKRAGKPIELTA 151 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-- 209 ++ +L+ LM N+ K V I ++ + +E + NV+ +HIS LRKK+ GFD Sbjct: 152 KQFELLKLLMINKNKIVTPEMIEENLWEM-NEERDSNVITAHISYLRKKIDK--GFDKEL 208 Query: 210 VDSKRFLGYSI 220 + + R +GY I Sbjct: 209 LKTIRGMGYKI 219 >gi|148381483|ref|YP_001256024.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931315|ref|YP_001385858.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937839|ref|YP_001389265.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|153940381|ref|YP_001392897.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|168181012|ref|ZP_02615676.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|168183623|ref|ZP_02618287.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|170755568|ref|YP_001783183.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|226950999|ref|YP_002806090.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|237797004|ref|YP_002864556.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|148290967|emb|CAL85103.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927359|gb|ABS32859.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933753|gb|ABS39252.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152936277|gb|ABS41775.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|169120780|gb|ACA44616.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|182668045|gb|EDT80024.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182673177|gb|EDT85138.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226841937|gb|ACO84603.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|229261601|gb|ACQ52634.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|295320874|gb|ADG01252.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] gi|322807868|emb|CBZ05443.1| response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium botulinum H04402 065] Length = 228 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 15/169 (8%) Query: 47 SAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 A E FL K + VL LP I IR S +P+I ++ + + G Sbjct: 40 EAQEGFLEYKPDLVLLDIMLPHIDGVDVLKWIRKDSTIPIIMLTAKGDTFDKVLALELGA 99 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRR 152 DD + KP +E+LARV A+ RR V N E + + + + + +P + Sbjct: 100 DDYIVKPFEPKELLARVKAVLRRYNVDNENKEALNFEQLTIDVNSYTVVYKNKEIKMPPK 159 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E +L YL N+ + + Q+ ++G +D + V+ HI +LR+KL Sbjct: 160 EFELLYYLARNKNRVFTREQLLCEVWG-YDYPGDSRTVDVHIKRLREKL 207 >gi|145295044|ref|YP_001137865.1| hypothetical protein cgR_0988 [Corynebacterium glutamicum R] gi|140844964|dbj|BAF53963.1| hypothetical protein [Corynebacterium glutamicum R] Length = 255 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 74/149 (49%), Gaps = 10/149 (6%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R+ P++ ++ ++ + D+G DD + KP E+LARV ++ RR Sbjct: 83 LEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRS 142 Query: 120 KVSNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 V +N++ G + + + RD G L R E +L+ L+ N+ K + + Sbjct: 143 AVESNQSSNIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLTRA 202 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKK 200 QI ++G +D N +E +I LR+K Sbjct: 203 QILEEVWG-YDFPTSGNALEVYIGYLRRK 230 >gi|67078048|ref|YP_245668.1| response regulator [Bacillus cereus E33L] gi|66970354|gb|AAY60330.1| response regulator [Bacillus cereus E33L] Length = 237 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 9/161 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P+I IS+ + + G DD + +P H+ I+AR+ + RR+ Sbjct: 65 RQIRNISICPIIFISELNETTEQIRALECGADDYIAEPSHYDVIVARIRSHIRRVHGEYA 124 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 SN R + ++ D + + G V L ++E +++E L+ N V + +IF+ I+ Sbjct: 125 SKSNERTINRSGLVLYPDKMELKYDGRVISLTKKEGQLVELLLKNYPSMVNREKIFNEIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 D + EN + +I+++R KL+ +LG + +++ R GY Sbjct: 185 DGID-YIYENTLSVYITRIRYKLK-ELGIRNSIETIRSAGY 223 >gi|42781734|ref|NP_978981.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737657|gb|AAS41589.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 224 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 5/185 (2%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L+++ + I L+ G +E+ R +RA P+I ++ S+ + DSG DD Sbjct: 38 LEAALETNYDLILLDLMLPGLNGIEVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRE 153 + KP E+LAR+ I+RR + N+ + +++ + R E L +E Sbjct: 98 YLPKPFAIEELLARMRVIFRREEQIENKHVSSLTFKDLQLQIESRTITKGNEEIELTNKE 157 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +L M N + + + + ++G +D VE N+V+ ++ LR KL + + + + Sbjct: 158 FELLLMFMKNINRVLTRDVLLDQVWG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTV 216 Query: 214 RFLGY 218 R GY Sbjct: 217 RGAGY 221 >gi|319793329|ref|YP_004154969.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315595792|gb|ADU36858.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 242 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 58/222 (26%), Positives = 107/222 (48%), Gaps = 15/222 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + + D+G ++E ++ + L+ R + A+ L+ G LE Sbjct: 8 LIVEDDAHIAELLRMHLRDEGYAIE--HAADGHAGLRELERGNWDALVLDLMLPGVDGLE 65 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + R RA ++ P+I IS S + + G DD + KP E++ARV A+ RR Sbjct: 66 ICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALMRRTDA 125 Query: 121 -VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N R E+G + + + R+ V G++ L RE +L + N GK ++ + Sbjct: 126 LARNARMESGSLTLGNLDIEPLAREVRVDGKLIELTPREFDLLYFFARNPGKVFSRLDLL 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + ++G + E+ V +HI++LR K+ DP + +R L Sbjct: 186 NQVWG-YQHDGYEHTVNTHINRLRTKVET----DPAEPRRIL 222 >gi|308188702|ref|YP_003932833.1| Transcriptional regulatory protein qseB [Pantoea vagans C9-1] gi|308059212|gb|ADO11384.1| Transcriptional regulatory protein qseB [Pantoea vagans C9-1] Length = 223 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 68/236 (28%), Positives = 104/236 (44%), Gaps = 39/236 (16%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D L+ DG A G+S GF+ +W +S +A+EA L Sbjct: 3 ILLIEDDRLIGDGIKA-----GLSKLGFSV----DWF-TSGESGCNALEAAPWDAVILDL 52 Query: 62 ELPR-----IIRAHSQ----VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 LP I+R Q VP++ ++ +L ++ G DD + KP E+ AR+ Sbjct: 53 SLPERDGLDILRQWRQQGNDVPVLILTARDALDQRVEGLQMGADDYLCKPFALTEVAARL 112 Query: 113 AAIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 A+ RR L+ N G V D E L RE +LE M N Sbjct: 113 QALIRRRHGQLQPELRHGNVVLIPGSHSVMRD-------DEAIELKSRELALLELFMRNP 165 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G+ + ++Q+ +Y +D V N VE HI LRKKL + GF + + +GY++ Sbjct: 166 GRVLTRSQLEEKLYS-WDADVSSNAVEVHIHHLRKKLGS--GF--IRTLHGVGYTL 216 >gi|255318228|ref|ZP_05359466.1| DNA-binding response regulator [Acinetobacter radioresistens SK82] gi|255304700|gb|EET83879.1| DNA-binding response regulator [Acinetobacter radioresistens SK82] Length = 223 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 13/168 (7%) Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L L I + +P++ IS LQ +D + G DD + KP E+LAR+ A+ RR Sbjct: 61 MLVLKNIRQKFPNLPVLIISARDQLQNRVDGLNQGADDYLIKPYEFDELLARIHALIRRS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV-------FPLPRRERRILEYLMANRGKRVAKTQ 172 + N + ++ G + +++ + L RE IL L+ + K +K Sbjct: 121 GLKNTVTDINK-KLSHSGLELDLEQHIACFNDEPIELSNREWSILTALLMHPSKIFSKND 179 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +Y FD V N VE +I LR KLG D + + R LGY + Sbjct: 180 LEDKLYD-FDSDVSSNTVEVYIHHLRA----KLGKDFIRTIRGLGYRL 222 >gi|229492138|ref|ZP_04385947.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis SK121] gi|229320926|gb|EEN86738.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis SK121] Length = 234 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 5/135 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--- 127 ++VP+ +S S+ + ++G DD + KP E++AR+ A+ RR + + Sbjct: 78 NEVPICVLSARSSVGDRIAGLEAGADDYLTKPFELAELVARLRALLRRTTRATPSVDHPI 137 Query: 128 -TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 GP+ V G + G L +RE +L L + G +++ Q+ ++G +D A + Sbjct: 138 TVGPLTVDLRGHRAHIDGRRIELTKREFDLLSVLAEHAGVVLSRAQLLRLVWG-YDFAAD 196 Query: 187 ENVVESHISKLRKKL 201 NVV+ ++ LRKKL Sbjct: 197 TNVVDVFVTYLRKKL 211 >gi|229042173|ref|ZP_04189928.1| hypothetical protein bcere0027_2460 [Bacillus cereus AH676] gi|228727170|gb|EEL78372.1| hypothetical protein bcere0027_2460 [Bacillus cereus AH676] Length = 182 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 15/162 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 8 IEVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 67 Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V SNN A+ F + E L +E +L++ +N G+ KTQ Sbjct: 68 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 127 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213 +F ++ D +E +N V HI KLRKK+ DP + K Sbjct: 128 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 163 >gi|170722646|ref|YP_001750334.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169760649|gb|ACA73965.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 231 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 14/164 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G++VL R +R S VP++ +S + +D DSG +D V KP +E LAR+ A+ Sbjct: 63 GQQVL---RELREWSAVPVMVLSVRANELQKVDALDSGANDYVTKPFGIQEFLARIRALL 119 Query: 117 RRLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R++ + A GP+ V R ++G L R+E +L L + G+ + + Q+ Sbjct: 120 RQVPQAGGSEVTASFGPLTVDFAFRKVTLEGAEVALTRKEYALLAQLAGHPGRVITQQQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216 I+G +V +H ++ LR KLG DP + RF+ Sbjct: 180 LKDIWG------PTHVENTHYLRIVVGHLRQKLGDDPT-APRFI 216 >gi|71907917|ref|YP_285504.1| two component transcriptional regulator [Dechloromonas aromatica RCB] gi|71847538|gb|AAZ47034.1| two component transcriptional regulator, winged helix family [Dechloromonas aromatica RCB] Length = 221 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 10/171 (5%) Query: 57 GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ LE+ IRA VPL+ I+ L L D G DD + KP E+LAR+ A+ Sbjct: 56 GKDGLEVLTSIRAKDNPVPLLIITARDGLNDRLRGLDGGADDYLLKPFEMAELLARMRAV 115 Query: 116 YRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQ 172 RR K N + G + + R+ V L RE +L+ L+ G ++++ Sbjct: 116 LRR-KGGNATSVLSNGVVSLDPATREAAVNNSASVQLSNREFALLQALLVRPGAILSRSD 174 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + IYG + E VE N VE I LR+ KLG + + + R +G+ + N Sbjct: 175 LEDRIYG-WGEEVESNAVEFLIHALRR----KLGGEVIKNVRGVGWMVSKN 220 >gi|83953654|ref|ZP_00962375.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. NAS-14.1] gi|83841599|gb|EAP80768.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. NAS-14.1] Length = 229 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 3/151 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 +P+I +S T+ ++G DD V KP RE++ARV RR++ +++ A Sbjct: 79 NIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRRVRPASSGASLSYA 138 Query: 132 RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + D V L E R+L L+ G+ ++ Q+ ++G D V+ Sbjct: 139 DITLDTERHRVNRAANELKLGPTEYRLLVTLLERPGRVFSRDQLLDHVWG-RDIYVDTRT 197 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+ HI++LRK L + G DP+ + R GY++ Sbjct: 198 VDVHIARLRKALTSHGGDDPIRTVRGAGYAL 228 >gi|116619216|ref|YP_821372.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116222378|gb|ABJ81087.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 228 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 88/186 (47%), Gaps = 11/186 (5%) Query: 23 GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82 G S E + E+ L++ E + + + G LE R IR+ + +P+I +S Sbjct: 25 GHSYEVIEARTGEDALEALPHEMPNLVLLDMNMPGMGGLETCRAIRSGTDIPVIILSVRN 84 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP-------IRVFS 135 + + + D+G DD V KP E+LAR+ A RR S + + GP + + Sbjct: 85 TEKDKVAALDAGADDYVTKPFGIEELLARIRAALRR---SPSGPDGGPHGFTASNLEIDF 141 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 D R G+ L +E +L YL+A+ G+ V ++ A++G D E + I+ Sbjct: 142 DARRVHANGKDVRLTPKEFEMLRYLVAHSGRPVTHRELLQAVWGP-DYGDEPEYLRVFIN 200 Query: 196 KLRKKL 201 +LRKK+ Sbjct: 201 QLRKKI 206 >gi|325830179|ref|ZP_08163636.1| putative response regulator MprA [Eggerthella sp. HGA1] gi|325487646|gb|EGC90084.1| putative response regulator MprA [Eggerthella sp. HGA1] Length = 245 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 79/152 (51%), Gaps = 2/152 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126 R VP++ ++ ++ + DSG DD + KP E+LA + A+ RR +V + Sbjct: 76 RKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQGEVLFEKL 135 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + + D + L +E + + LMAN G+ V+K + + ++G+ + + E Sbjct: 136 AAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVWGV-ESSAE 194 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +N VE+++S LRKK++ +++ R GY Sbjct: 195 DNNVEAYVSFLRKKMKFLGSTARIETLRRAGY 226 >gi|317496605|ref|ZP_07954952.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316913270|gb|EFV34769.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 222 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 10/160 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I IS + + G DD + KP + A++ A+ RR V N + Sbjct: 67 IRKISKVPIIFISSANDDMNIVMAMNIGADDFIEKPFKLVVLKAKIEALLRR--VYNFNS 124 Query: 127 ETGPI----RVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 T I +F RD G E+ L + E +IL L+ NR K V++ +I +A++ Sbjct: 125 GTNLIVYKDVIFDMSRDEIKYGEELAELTKNESKILTVLLENREKIVSREEIINALWQS- 183 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 D ++EN + ++++LR KL++ +G D + +K+ GY + Sbjct: 184 DNFIDENTLSVNVNRLRAKLKS-IGVDEFITTKKGKGYIV 222 >gi|319795224|ref|YP_004156864.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315597687|gb|ADU38753.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 226 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 71/132 (53%), Gaps = 4/132 (3%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEV-FP 148 D G DD + KP E++ARV A+ RR V + T G +R R V GEV Sbjct: 91 LDGGADDYLAKPFSMDELMARVRALARRPAVRASLVMTLGQLRFEHHTRQVHV-GEVGLT 149 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 LPRRE +LE L+ +RG+ V + + +YG D+ ++ N +++H+S+LR KL Sbjct: 150 LPRRELLVLEALLEHRGRTVQREALQDRVYGHKDD-IQSNALDTHVSRLRSKLDKAGAQV 208 Query: 209 PVDSKRFLGYSI 220 + + R +GY I Sbjct: 209 EIHAIRGVGYLI 220 >gi|312864518|ref|ZP_07724749.1| transcriptional regulatory protein WalR [Streptococcus downei F0415] gi|311099645|gb|EFQ57858.1| transcriptional regulatory protein WalR [Streptococcus downei F0415] Length = 235 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 12/154 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP+I +S S + + G DD V KP +RE+LAR+ A RR + Sbjct: 61 LEVAKEIRKSSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTE 120 Query: 121 -----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 S++ G +++ D + +GE L RE +L +L + G+ + Sbjct: 121 NIETAVAEENDTSDSELTIGDLQIIPDAFVAKKRGEELELTHREFELLHHLATHIGQVMT 180 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ I +LR+K+ + Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 213 >gi|291519285|emb|CBK74506.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 229 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 4/141 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123 IR S +P++ ++ L+ F+ G D+ +NKP + ++ARV A+ RR + Sbjct: 70 IRETSSIPVLMLTAKGEENDVLNGFELGADEYINKPFSPKILMARVNAVLRRSTDDSLGK 129 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E G I++ D G L +E +L Y + N G +++ +I + ++ +D Sbjct: 130 KVVEAGGIQLDVDAHVATNDGNPVELSVKEFELLYYFINNEGIALSREKILNHVWD-YDY 188 Query: 184 AVEENVVESHISKLRKKLRNK 204 + +++H+ KLR KL +K Sbjct: 189 FGDARTIDTHVKKLRSKLDDK 209 >gi|228477889|ref|ZP_04062503.1| Two-component response transcriptional regulator [Streptococcus salivarius SK126] gi|228250379|gb|EEK09619.1| Two-component response transcriptional regulator [Streptococcus salivarius SK126] Length = 225 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 10/117 (8%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR-DPE----VQGE 145 D+G DD + KPI +E+LAR+ ++ RR+ S T I F R D E V G Sbjct: 93 LDAGADDYLTKPISLKELLARLRSLERRVSESF----TAKILTFGSVRLDQEEQELVAGN 148 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 L RE +++ + M N K++ +F I+ +E V+E++V +IS LR+KL+ Sbjct: 149 AIRLSSRETKLMAHFMLNPAKKLTTEHLFKTIWE-DEEDVDESIVWVYISYLRQKLQ 204 >gi|268591187|ref|ZP_06125408.1| QseB [Providencia rettgeri DSM 1131] gi|291313419|gb|EFE53872.1| QseB [Providencia rettgeri DSM 1131] Length = 224 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 74/147 (50%), Gaps = 7/147 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P+I ++ + + DSG DD + KP E+++RV A+ RR+ S+ + G + Sbjct: 73 IPIIILTARNQMDNLVSSLDSGADDFLTKPFAMPELISRVKAVSRRMAGFSSEIWQLGNL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 ++ + ++ L +E +L L+ N V KT + ++GL D VE N +E Sbjct: 133 QLNPLNHQVTLNEQLLLLSGKEYLLLYELIKNADNVVRKTDLEQRLFGLDD--VESNSLE 190 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 HI LR+ K+G D + + R +GY Sbjct: 191 VHIHNLRR----KIGKDRIITIRGIGY 213 >gi|162295961|gb|ABX83929.1| AdeR [Acinetobacter baumannii] Length = 247 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122 IR +Q P+I ++ + G DD V KP + E++ARV A+ RR KV+ Sbjct: 78 IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQFANKVT 137 Query: 123 NNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N I + +D + E + L E +I+ +++ K + ++ + + Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D E V+SH+SKLRKKL+ + F + + R +GY +D Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLKEQGIFQMLINVRGVGYRLD 238 >gi|94970088|ref|YP_592136.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94552138|gb|ABF42062.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 229 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 5/140 (3%) Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 I +A P++ ++ L + G DD + KP E++AR+ A+ RR + Sbjct: 68 IRQAGVATPILMLTARGQLVDKVVGLKIGADDYMTKPFEMIELMARIEALLRRSPMRPPE 127 Query: 126 AET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 E G +RV G + +G+ L RE ++L YL+ NRGK V++ ++ ++G + Sbjct: 128 KEEVQQFGDLRVDLRGTEVTREGKPVALSAREFQLLRYLLENRGKTVSRGELLKEVWG-Y 186 Query: 182 DEAVEENVVESHISKLRKKL 201 + V+ HI+ LR+K+ Sbjct: 187 SASTYTRTVDMHIASLRQKI 206 >gi|83941435|ref|ZP_00953897.1| two-component response regulator [Sulfitobacter sp. EE-36] gi|83847255|gb|EAP85130.1| two-component response regulator [Sulfitobacter sp. EE-36] Length = 223 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 6/165 (3%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L + +R A + P++ ++ S+ + ++G DD + KP E+ ARV A+ RR Sbjct: 60 LTLVKTLRGAGNLTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVTALARRP 119 Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G + + R G+ L RE +LE+L+ +G+ +T + A+ Sbjct: 120 QAMEQETVLRAGDLEMQLITRKVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAV 179 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + FD NVVE+HIS+LR K+ + + + R GY ID Sbjct: 180 WDISFDPMT--NVVETHISRLRAKVDKPFDRELIQTVRGAGYRID 222 >gi|324328720|gb|ADY23980.1| Two-component response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 229 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 8/152 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 64 VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123 Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I V R V L E IL YLM N+G + + Q+ S Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLIS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 I+G ++ A ++ V SHI LR KL K + Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|319893322|ref|YP_004150197.1| Two-component response regulator colocalized with HrtAB transporter [Staphylococcus pseudintermedius HKU10-03] gi|317163018|gb|ADV06561.1| Two-component response regulator colocalized with HrtAB transporter [Staphylococcus pseudintermedius HKU10-03] Length = 225 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 83/161 (51%), Gaps = 4/161 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL ++ + P+I ++ +L F +G DD V KP E++ R+ A+ RR ++ Sbjct: 63 ELCETLKYDYEYPVIMLTARDALSDKERAFLAGTDDYVTKPFEVAELIFRIQAVLRRYQI 122 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T G + + + +V+ + LP +E +L L+A + + Q+ I+G+ Sbjct: 123 ATETLLTLGNLTIDQTQLEVKVETKGMILPHKEFELLSLLVAYPKQVFPREQLIEKIWGI 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 D +E V+ HI +LR +L+ KLG + +++ R +GY + Sbjct: 183 -DYEGDERTVDVHIKRLRARLK-KLGANVYIETVRGIGYKV 221 >gi|291563929|emb|CBL42745.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 234 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 105/233 (45%), Gaps = 18/233 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D DG + F + +E L+ +E++ + ++ G L Sbjct: 6 ILVVDDEKEIADLVEIYLVSDGYKV--FKANNAKEGLEILDQEEIHLVLLDIMMPGMDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR + +P+I +S + + +G DD V KP + E+ ARV + RR Sbjct: 64 EMCRKIRETNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123 Query: 122 SNNRAETG-------PIRVFSDGRDPE---VQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N + TG IR S +D V GE L E IL L +N G+ + Sbjct: 124 LNPNSSTGKAAKNEISIRGLSINKDNHKVVVYGEEIKLTPIEFDILYLLASNPGRVFSTD 183 Query: 172 QIFSAIYGLFDEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221 +IF ++ +E V E N V HI +LR K++ D + + + +GY I+ Sbjct: 184 EIFEKVW---NEKVYEANNTVMVHIRRLRGKMKEDTRQDKIITTVWGVGYKIE 233 >gi|228901720|ref|ZP_04065892.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228857852|gb|EEN02340.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 228 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121 IR +P+I +S + SG DD ++KP + E++ARV + RR K V Sbjct: 68 IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTSV 127 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N++ E G + V +D R V+G+ L +E ILE L N+G ++ +I+ A++ Sbjct: 128 EHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIYEAVWK 187 Query: 180 -LFDEAVEENVVESHISKLRKKL 201 +F ++ +N V HI+K+R K+ Sbjct: 188 EVFYKS--DNTVMVHITKIRDKI 208 >gi|223934839|ref|ZP_03626758.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223896292|gb|EEF62734.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 236 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 95/200 (47%), Gaps = 17/200 (8%) Query: 13 DGYIALFGDDGVSLEGF---NSLEFEE--WLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 D IA F +G+ GF + EE ++ + D + ++ L K + + + R+ Sbjct: 23 DAKIASFVVNGLKQSGFAVDRCADGEEGHTFAATTKYDAAVVDVML-PKLDGLSLVQRLR 81 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 + ++P+I +S S+ + +G DD + KP E+ AR+ A+ RR ++N E Sbjct: 82 KEGIRIPVIFLSAKASVDDRVKGLQAGGDDYLTKPFAFSELHARIQALIRR---ASNATE 138 Query: 128 TGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181 + V G D + GE L RE +LEYLM N G+ V KT I I+ F Sbjct: 139 PTRLTVGDLGLDLLTREVTRGGEKIELQSREFALLEYLMRNTGRAVTKTMILEHIWDYSF 198 Query: 182 DEAVEENVVESHISKLRKKL 201 D + NVV+ + +LR K+ Sbjct: 199 DP--QTNVVDVLVFRLRNKI 216 >gi|167757542|ref|ZP_02429669.1| hypothetical protein CLORAM_03092 [Clostridium ramosum DSM 1402] gi|167702539|gb|EDS17118.1| hypothetical protein CLORAM_03092 [Clostridium ramosum DSM 1402] Length = 223 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 7/160 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122 IR +S VP++ IS + +G DD + KP +L ++ AI RR + Sbjct: 66 IRENSTVPILFISSREQNADKILALSAGGDDYIEKPFDLELLLVKIKAILRRTYEYKHLE 125 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + GR Q +V L + E +I+ L+ RG V + Q+ ++ D Sbjct: 126 KEYLDEDTSYDIVRGRFV-YQNKVLELTKSEGKIMSTLLGQRGNWVTREQLMMTLWNT-D 183 Query: 183 EAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 E V + + HIS+LR KL+ G D + +K+ +GY ID Sbjct: 184 EFVTDATLSVHISRLRNKLKELTNGKDIIKTKKGVGYYID 223 >gi|116333655|ref|YP_795182.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116099002|gb|ABJ64151.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 228 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 8/148 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R P+I ++ S+ + D G DD + KP E+LARV A+ RR+ Sbjct: 61 IEVARRVREVKSTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRIH 120 Query: 121 VSNNRAETGPIRV-FSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + T V F D R EV L +RE +L LM N +A+ + Sbjct: 121 LEGEQKSTKQTTVKFKDLTIEKENRIVRRGDEVINLTKREYELLLALMENINVVLARDVL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 + ++G ++ VE NVV+ ++ LR K+ Sbjct: 181 LTKVWG-YESEVETNVVDVYVRYLRNKI 207 >gi|158320018|ref|YP_001512525.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140217|gb|ABW18529.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 225 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 1/160 (0%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + ++A P++ ++ L+ + D G DD + KP H +LAR+ + R Sbjct: 62 EICKGLKAKGIGPILILTSRNQLRDEIHALDLGADDYLIKPCHPDRLLARIQKLIRLYSN 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N E+G IR+ G+ L E I++ L+ V K ++F I+G Sbjct: 122 LNILLESGDIRLEEKTNTLYFNGKAVVLSENEGMIMKMLIEADTSVVKKEELFIRIWG-S 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E V+EN+++ ++++LR+ L + D + + R +GY ++ Sbjct: 181 TEFVDENILQVNMTRLRRTLESIGITDRIKTIRGVGYRLE 220 >gi|260904787|ref|ZP_05913109.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Brevibacterium linens BL2] Length = 219 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 17/166 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ + +P++ ++ + T+ +SG D + KP E+LAR+ RL++ Sbjct: 64 LSQLRKDRPDLPVLVLTARDNADDTIFALESGAADYMIKPFRFGELLARI-----RLRLK 118 Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E G +R+ R V ++ L RE + E L+ NRG +++ Q+ S Sbjct: 119 ETATEAPQTELVRGDVRIDLLKRQVWVADKIIDLSARELSLAEILLQNRGNVLSREQLLS 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G FD NVV+ ++ LRK KLG D V + R GY +D Sbjct: 179 HVWG-FDFDPGSNVVDVYVGYLRK----KLGSDFVTTVRGFGYRVD 219 >gi|51244452|ref|YP_064336.1| Pho family two-component response regulator [Desulfotalea psychrophila LSv54] gi|50875489|emb|CAG35329.1| probable two-component system response regulator (Pho family) [Desulfotalea psychrophila LSv54] Length = 224 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 5/153 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRA 126 A + P++ +S S+ + G DD + KP E+L RV A+ RR + + R Sbjct: 69 AGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQKHSPQTRL 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 GP+ + + G LP +E +L Y+ N G ++KT I +YG FD Sbjct: 129 SIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVYGYNFDP-- 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + NVV+ + +LR K+ G + + R +GY Sbjct: 187 QTNVVDVLVCRLRAKIDKGFGQQLIQTIRGVGY 219 >gi|117922456|ref|YP_871648.1| two component transcriptional regulator [Shewanella sp. ANA-3] gi|117614788|gb|ABK50242.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 227 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 8/160 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ + P++ ++ S Q ++ D+G DD + KP H E++AR+ A+ RR S Sbjct: 65 RVRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR---SAG 121 Query: 125 RAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +A GP + + + E+ L E ++ E M ++G+ +KT + IY Sbjct: 122 KASPVITNGPFSLNTSSLEVRKGDELVTLSGSEYKLFEIFMLHQGEVKSKTALTEHIYDQ 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D ++ NV+E I +L KKL ++ +++ R GY + Sbjct: 182 -DFDLDSNVIEVFIRRLCKKLDPDNQYNLIETLRGQGYRL 220 >gi|296104675|ref|YP_003614821.1| two-component system, OmpR family, response regulator QseB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059134|gb|ADF63872.1| two-component system, OmpR family, response regulator QseB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 219 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 103/230 (44%), Gaps = 27/230 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D L+ DG A G S++ F + + SA D ++ L Sbjct: 3 ILLVEDDKLIGDGIKAGLSKMGFSVDWFTDGKTGQAALCSAPYDAVVLD----------L 52 Query: 62 ELPRI-----IRAHSQV----PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 LP I +RA + P++ ++ +L ++ G DD + KP E+ AR+ Sbjct: 53 TLPEIDGLAILRAWRESGRSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARL 112 Query: 113 AAIYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 A+ RR R+E G + + ++GE L +E +LE LM N G+ + + Sbjct: 113 EALVRR-SHGQTRSELRHGKVTLDPTSLIATLEGETLALKPKEFALLELLMRNAGRVLPR 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I +Y +D+ V N VE H+ LR+ KLG + + + +GY++ Sbjct: 172 KAIEEKLY-TWDDDVSSNAVEVHVHHLRR----KLGSEFIRTVHGIGYTL 216 >gi|257784884|ref|YP_003180101.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] gi|257473391|gb|ACV51510.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] Length = 223 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 103/227 (45%), Gaps = 14/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D ++ + L +G + S E +A D+ ++ L G G+++ Sbjct: 4 ILVVEDDHQIQQELVLLLQRNGFEAQALTSFEAVPQQIIAAHPDLVLLDLNLPGIDGQQI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +R S VP+I ++ + L G DD + KP + + +L + ++ RR Sbjct: 64 C---REVRQLSNVPIIVVTSRNTDLDELMVLSLGADDFIAKPYNTQILLMHITSVLRR-- 118 Query: 121 VSNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +N+ TG + + S + L + E RIL LM N G V++ +I Sbjct: 119 -TNSDVTTGAQLSHAGVTLDSSSCKVSANQKSVELTKNELRILSLLMQNAGTVVSRQRIQ 177 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ DE V++N + +IS LR L + D V ++R LGY I+ Sbjct: 178 EELWQ-SDEFVDDNTLTVNISHLRNTLASIGVEDFVMTRRGLGYVIE 223 >gi|154245480|ref|YP_001416438.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159565|gb|ABS66781.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 223 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 34/200 (17%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV---------------LELPRI-------- 66 ++LE WL R+D ++ F GE+ L LP+I Sbjct: 8 DNLELAGWLAKILRQDNYVVDVF--HDGEEADHALAVAAYDLVILDLTLPKINGMQLLRR 65 Query: 67 IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 IR+ VP+I ++ SL + D G DD + KP E+ AR+ RR S R Sbjct: 66 IRSRKDTVPVIILTANASLDGRVAGLDEGADDYLAKPFDIAELEARIRVQLRR---SARR 122 Query: 126 AE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + ++ R + G L RE +LE L+ G+ V+K Q+ +I+GL Sbjct: 123 PDPVISCGALAFDTNTRLFALSGTPLALTPREHAVLEMLLMKSGQTVSKAQLSQSIFGL- 181 Query: 182 DEAVEENVVESHISKLRKKL 201 D+ + + +E ++ ++RKKL Sbjct: 182 DDLADPSAIEIYVHRVRKKL 201 >gi|330970055|gb|EGH70121.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 227 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 3/167 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +++ + +R+ S VP++ I+ L D G DD + KP RE++ARV AI Sbjct: 63 GRDGMDICKELRSFSDVPIVMITARVEEIDRLLGLDPGADDYICKPFSPREMVARVKAIL 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR S G ++V G L E R+L + G+ ++ + Sbjct: 123 RRSSSSEPHTPKG-LQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +Y V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 182 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 227 >gi|153937923|ref|YP_001390256.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152933819|gb|ABS39317.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318352|gb|ADF98729.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 223 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 99/214 (46%), Gaps = 15/214 (7%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+GY ++ DG + L RE + I + ++ L ++IR Sbjct: 20 VLNKNGYKSIEAKDG-----------DSALDILYREYIDLIISDIMMPNMDGYTLTKLIR 68 Query: 69 -AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 +++ VP++ I+ + + F G DD + KPI E++ RV A+ RR ++ N R Sbjct: 69 ESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRSQIINERKI 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G D + + LP++E ++ L++ K + Q+ I+G+ E + Sbjct: 129 VIGETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIWGIESET-D 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+ HI++LR + ++ F+ + + R LGY + Sbjct: 188 PRTVDVHINRLRDRFKDNKDFNII-TIRGLGYKV 220 >gi|77359341|ref|YP_338916.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125] gi|76874252|emb|CAI85473.1| Transcriptional regulatory protein CpxR [Pseudoalteromonas haloplanktis TAC125] Length = 229 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLK-------VSNNRAETGPIRVFSDGRDPEVQGEV 146 G DD + KP +HRE+LARV AI RR++ S+N+ + + R+ ++ Sbjct: 93 GADDYIPKPFNHRELLARVKAITRRIEHITTMNTTSSNKLVVNGVTINLAAREALIKQTT 152 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKLR 202 L E IL L G+ V+K QI + G FD + ++ H+S +RKK+ Sbjct: 153 LTLTGTEYEILALLAKRAGEVVSKEQISEDVLGRRLASFDRS-----IDMHVSNIRKKIA 207 Query: 203 NKLGFDPVDSKRFLGY 218 L + + + R GY Sbjct: 208 EHLPNELIKTIRGTGY 223 >gi|257485933|ref|ZP_05639974.1| DNA-binding response regulator RstA [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331010343|gb|EGH90399.1| DNA-binding response regulator RstA [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 245 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 97/196 (49%), Gaps = 15/196 (7%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 VS+EG +L + + + D+ ++ L GE + R +R P++ ++ Sbjct: 32 VSIEGNGALATARII--AEQPDLVILDLML--PGEDGFSICRSVRDRYDGPILMLTARTD 87 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN------NRAETGPIRVFSDG 137 + D+G DD V KP+H R +LAR+ A+ RR + R GP+ V + Sbjct: 88 DTDHIQGLDTGADDFVCKPVHPRVLLARIHALLRRSEAPQVPAAELRRLVFGPLVVDNAL 147 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 R+ ++ + L E +L L+AN G+ +++ +IF+A+ G+ + ++ ++ IS++ Sbjct: 148 REAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFTALRGVGYDG-QDRSIDVRISRI 206 Query: 198 RKKLRNKLGFDPVDSK 213 R K+G DP+ + Sbjct: 207 RP----KIGDDPIHPR 218 >gi|229075160|ref|ZP_04208154.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|228707937|gb|EEL60116.1| Two-component response regulator [Bacillus cereus Rock4-18] Length = 228 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 9/149 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----- 117 + R IR S VP+I ++ TL F+ G DD V KP +LAR + Sbjct: 64 VCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYSS 123 Query: 118 --RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ ++ +G I V R + GE L E IL Y M N+G +++ Q+ + Sbjct: 124 AVKVLTADTLTSSG-IHVHFPSRTVTIDGEDISLTHTEFEILTYFMQNQGIVISREQLIN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK 204 I+G ++ A ++ + SHI LR KL K Sbjct: 183 KIWG-YEFAGDDRTINSHIRNLRHKLGQK 210 >gi|291326456|ref|ZP_06124598.2| KDP operon transcriptional regulatory protein KdpE [Providencia rettgeri DSM 1131] gi|291314289|gb|EFE54742.1| KDP operon transcriptional regulatory protein KdpE [Providencia rettgeri DSM 1131] Length = 239 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 6/147 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+L R +R S +P+I +S + D+G DD + KP E+LARV RR Sbjct: 75 LDLIRDLRQWSSIPIIVLSAREEESQKVAALDAGADDYLTKPFGISELLARVRVALRRFG 134 Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S N++ + G I + R QGE L E R+L L+AN GK + + + + Sbjct: 135 KSTQENSKCQFGDITIDFINRIVTKQGEELHLTPIEFRLLSELVANSGKVLTQRHLLLQV 194 Query: 178 YGLFDEAVEEN-VVESHISKLRKKLRN 203 +G VE N + ++ LR+KL N Sbjct: 195 WG--PNYVEHNHYLRIYMGHLRQKLEN 219 >gi|255656914|ref|ZP_05402323.1| two-component system esponse regulator [Clostridium difficile QCD-23m63] gi|296452246|ref|ZP_06893952.1| response regulator [Clostridium difficile NAP08] gi|296877598|ref|ZP_06901628.1| response regulator [Clostridium difficile NAP07] gi|296258903|gb|EFH05792.1| response regulator [Clostridium difficile NAP08] gi|296431359|gb|EFH17176.1| response regulator [Clostridium difficile NAP07] Length = 230 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 9/166 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S +P+I IS + +SG DD + KP ++ ++A++ + RR+ Sbjct: 66 RCIRQQSNLPIIFISARDGNVDQIRALESGADDYITKPFYYDVVMAKIKSNIRRVYGEYS 125 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K+ E ++ + + + E+ + + ++E ++E L+ K V++ + I+ Sbjct: 126 TKIDERIVELDGLKFYPERLELELHSKNLIITKKEGILIECLIKRYPKVVSRDYLLEKIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223 E VEEN + ++S++RK+ +LG D V + R LGY ++ N Sbjct: 186 DDI-EFVEENTLNVNVSRIRKRFE-ELGIDNAVQTIRGLGYKLNKN 229 >gi|169826328|ref|YP_001696486.1| putative sensory transduction protein [Lysinibacillus sphaericus C3-41] gi|168990816|gb|ACA38356.1| Hypothetical sensory transduction protein [Lysinibacillus sphaericus C3-41] Length = 229 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 10/167 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L RI S+ P+I ++ ++ + D G +D V KP E+LAR I L+ S Sbjct: 65 LKRIRATESKTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLAR---IRNALRFS 121 Query: 123 NNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + T G + + R+ G+ L RE +L YLM + + + + QI Sbjct: 122 QNASPTKVGVSFGQLSINEQTREVIYYGKEIQLTPREYDLLLYLMKHPKQVLTREQILET 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++G FD + NVV+ +I +R+KL + + R +GY + N Sbjct: 182 VWG-FDYYGDTNVVDVYIRYVRQKLEIANATPIIQTVRGVGYVLKEN 227 >gi|218900607|ref|YP_002449018.1| DNA-binding response regulator YycF [Bacillus cereus G9842] gi|218545115|gb|ACK97509.1| DNA-binding response regulator YycF [Bacillus cereus G9842] Length = 235 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 20/219 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ + DG +E ++ + E + ++ G+ LE+ R IR Sbjct: 23 LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 71 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122 S++P+I ++ S + + G DD V KP RE+LARV A RR K Sbjct: 72 SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGSAEKEE 131 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N GPI + + + E L RE +L YL + G+ + + + ++G +D Sbjct: 132 NTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 190 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + V+ + +LR+K+ + + ++R +GY + Sbjct: 191 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229 >gi|325282397|ref|YP_004254938.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324314206|gb|ADY25321.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 222 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 80/159 (50%), Gaps = 2/159 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +S +P+I ++ +L + ++G DD + KP + E++ARV + R + Sbjct: 63 EVTRRLRKNSSMPIIILTAMDALDRKVALLEAGADDYMTKPFYPEELVARV-KVQLRHQQ 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + + R +G L RE +L +L G+ ++ +I ++ Sbjct: 122 HGDVIRVGDLEIHPQKRLCYFKGHEVRLSPREFDLLTFLARQPGRVYSRAEIEREVWS-G 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D NVV+ H++ +R KLR+ G+ + + R +GY++ Sbjct: 181 DLPSNSNVVDVHMANMRSKLRDLDGYGLIRTVRGIGYAL 219 >gi|291006081|ref|ZP_06564054.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 237 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 10/204 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V+D G ++E E L + + D+ ++ L G G LE Sbjct: 15 LVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGG--LE 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R +VP++ ++ + + G DD V KP RE++ RVA+I RR + S Sbjct: 73 VCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRARTS 132 Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 AE G +R+ D R + G L RE +L +L+ + G+ ++ ++ + Sbjct: 133 QP-AEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQV 191 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G + + V H+ +LR+K+ Sbjct: 192 WGW--SFGDHSTVTVHMRRLREKV 213 >gi|289643785|ref|ZP_06475893.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289506391|gb|EFD27382.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 242 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 16/123 (13%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR-DPEVQ-----GEVF 147 G DD V KP E++ARV AI RR +++ GP+R FSD DPE + G Sbjct: 111 GGDDYVTKPFAVSELVARVRAILRRAGAADS--TPGPLR-FSDLELDPETREVRRGGRHV 167 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E R+L YL+AN K + + Q+ ++G D E V+E+++S LR+K+ Sbjct: 168 ELTATEYRLLHYLLANARKVLTRAQLLDHVWG-HDFGGEARVLETYVSYLRRKI------ 220 Query: 208 DPV 210 DPV Sbjct: 221 DPV 223 >gi|212635060|ref|YP_002311585.1| transcriptional regulatory protein [Shewanella piezotolerans WP3] gi|212556544|gb|ACJ28998.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 224 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 3/151 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130 + P++ ++ + Q ++ ++G DD + KP E++AR+ A+ RR + +G Sbjct: 72 KAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPKITSGA 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + E + E ILEYLM + + VAK ++ IYG D+ + N + Sbjct: 132 LEIDLAAKQVSMNEEPMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDPNTI 189 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E +S+LRKKL +P+ + R GY + Sbjct: 190 EVMVSRLRKKLTKDGLENPIATIRGQGYKFN 220 >gi|109453258|gb|ABG34109.1| PhoP [Salmonella enterica subsp. enterica] Length = 213 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 5/212 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ ++ + D++ ++ L E L Sbjct: 4 LVVEDNALLRHPLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R+ +P++ ++ Q ++ SG DD V KP H E++AR+ A+ RR Sbjct: 62 LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ V EV L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E E + ++ + +LRKK++ + D + + Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHDVITT 212 >gi|119473456|ref|ZP_01614965.1| Transcriptional regulatory protein CpxR [Alteromonadales bacterium TW-7] gi|119444467|gb|EAW25798.1| Transcriptional regulatory protein CpxR [Alteromonadales bacterium TW-7] Length = 229 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 16/136 (11%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSN-------NRAETGPIRVFSDGRDPEVQGEV 146 G DD + KP +HRE+LARV AI RR++ N N+ + + R+ + Sbjct: 93 GADDYIPKPFNHRELLARVKAITRRIEHINSLNINTTNKLLVNGVTINLAAREASIDENT 152 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKLR 202 L E IL L N + V+K QI + G FD + ++ H+S +RKK+ Sbjct: 153 LTLTGTEYEILALLCKNASQVVSKEQISEEVLGRRLASFDRS-----IDMHVSNIRKKIA 207 Query: 203 NKLGFDPVDSKRFLGY 218 + + + + R GY Sbjct: 208 EHIKTERIKTMRGSGY 223 >gi|302184853|ref|ZP_07261526.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae 642] Length = 245 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 85/167 (50%), Gaps = 11/167 (6%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE + R +R P++ ++ ++ D+G DD V KP+H R +LAR+ Sbjct: 57 LMLPGEDGFSICRRVRDRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARI 116 Query: 113 AAIYRRLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 A+ RR + R GP+ V + R+ ++ + L E +L L+AN G+ Sbjct: 117 KALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGR 176 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +++ +IF+A+ G+ + ++ ++ IS++R K+G DP+ + Sbjct: 177 TLSREEIFTALRGVGYDG-QDRSIDVRISRIRP----KIGDDPIHPR 218 >gi|225387678|ref|ZP_03757442.1| hypothetical protein CLOSTASPAR_01448 [Clostridium asparagiforme DSM 15981] gi|225046228|gb|EEG56474.1| hypothetical protein CLOSTASPAR_01448 [Clostridium asparagiforme DSM 15981] Length = 222 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 21/153 (13%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE VLE + +R +P+I +S SL + +G DD + KP +++AR+ A+ Sbjct: 60 GEMVLETIKKLR----LPVIVVSAKSSLVDRVRLLRAGADDYITKPFESADLIARIEAVL 115 Query: 117 RRLKVSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 RR + S E G I V GR+ ++ + F L L+Y + NR K V Sbjct: 116 RRTERSFGVLEFGDIAMDIDRHVVLKGGREVDITPKEFDL-------LQYFLENRNKVVK 168 Query: 170 KTQIFSAIYGLFDEAVEEN-VVESHISKLRKKL 201 + ++ + ++G E +E + VE H+ +LRKK+ Sbjct: 169 REELSAHVWG--QEYLESSRTVEIHVQRLRKKM 199 >gi|218549147|ref|YP_002382938.1| DNA-binding transcriptional regulator PhoP [Escherichia fergusonii ATCC 35469] gi|218356688|emb|CAQ89315.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Escherichia fergusonii ATCC 35469] gi|324113921|gb|EGC07895.1| response regulator receiver domain-containing protein [Escherichia fergusonii B253] gi|325497568|gb|EGC95427.1| DNA-binding transcriptional regulator PhoP [Escherichia fergusonii ECD227] Length = 223 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/218 (23%), Positives = 103/218 (47%), Gaps = 5/218 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D L++ D G ++ + ++ + D++ I+ L E L Sbjct: 4 LVVEDNPLLRHHLKVQLQDAGHQVDDAEDAKEADYFLNEHEPDIAIIDLGL--PDEDGLS 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R++ +P++ ++ Q ++ +G DD V KP H E++AR+ A+ RR Sbjct: 62 LIRRWRSNDISLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVIARMQALLRRNSG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ + E+ L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVISLPPFQVDLSRRELSINNEIIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E E + ++ + +LRKK++ + + + + R GY Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPDEVITTVRGQGY 218 >gi|111020130|ref|YP_703102.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110819660|gb|ABG94944.1| transcriptional regulator [Rhodococcus jostii RHA1] Length = 235 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 6/203 (2%) Query: 23 GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGI 78 G+ LEGF + E+ L + + AI ++ G E+ R +RA P++ + Sbjct: 19 GLELEGFVVVTAATGEDGLWHATEDTFDAIVLNIMLPGLNGYEIVRALRAKQIWTPILML 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR 138 + D FD G DD + KP ++AR+ A+ RR + T R Sbjct: 79 TAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRRAAPARPVLLTAGDLSLDPAR 138 Query: 139 DPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 ++G E L RE +LE+L+ N + K +I ++ + +EN+VE ++ L Sbjct: 139 RRVMRGNEELALTPREFGVLEFLLRNPDTALTKGEILRNVWDAHYDG-DENIVEVYVGYL 197 Query: 198 RKKLRNKLGFDPVDSKRFLGYSI 220 R+K+ G +D+ R +GY + Sbjct: 198 RRKIDAPFGAHTIDTVRGVGYRL 220 >gi|332753082|gb|EGJ83466.1| transcriptional regulatory protein qseB [Shigella flexneri 4343-70] Length = 210 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 6/148 (4%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132 P++ ++ +L ++ G DD + KP E+ A++ A+ RR ++N G + Sbjct: 65 PVLNLTARDALAERVEGLRLGADDYLCKPFALIEVAAKLEALMRRTNGQASNELRHGNVM 124 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + R + GE L +E +LE LM N G+ + + I +Y +DE V N VE Sbjct: 125 LDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY-TWDEEVTSNAVEV 183 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220 H+ LR+ KLG D + + +GY++ Sbjct: 184 HVHHLRR----KLGSDFIRTVHGIGYTL 207 >gi|332087272|gb|EGI92404.1| transcriptional regulatory protein qseB [Shigella dysenteriae 155-74] Length = 210 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 6/148 (4%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132 P++ ++ +L ++ G DD + KP E+ AR+ A+ RR ++N G + Sbjct: 65 PVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVM 124 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + R + GE L +E +LE LM N G+ + + I +Y +DE V N VE Sbjct: 125 LDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY-TWDEEVTSNAVEV 183 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220 H+ LR+ KLG D + + +GY++ Sbjct: 184 HVHHLRR----KLGSDFIRTVHGIGYTL 207 >gi|322517326|ref|ZP_08070201.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322124023|gb|EFX95576.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 225 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 6/115 (5%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPE-VQGEVF 147 D+G DD + KPI +E+LAR+ ++ RR+ ++ G +R+ D + E V G Sbjct: 93 LDAGADDYLTKPISLKELLARLRSLERRVSETFTSKILTLGSVRL--DQEEQELVAGNAI 150 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 L RE +++ + M N K++ +F I+ +E V+E++V +IS LR+KL+ Sbjct: 151 RLSSRETKLMAHFMLNPAKKLTTDHLFKTIWD-DEEDVDESIVWVYISYLRQKLQ 204 >gi|317048819|ref|YP_004116467.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|316950436|gb|ADU69911.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 235 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 8/151 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G L L R IR S +P+I ++ L + G DD + KP RE++ARV I Sbjct: 63 GRDGLTLCREIRRFSDLPIIMVTARTEEIDRLLGLEIGADDYICKPFSPREVVARVKTIL 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDP----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR+K S A+ + + R E Q E+ P E R+L+ L GK ++ Q Sbjct: 123 RRVKRSPEEAQQASHLLIDESRFQASWREQQLELTPA---EFRLLKTLALEPGKVFSREQ 179 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + +Y + V + ++SHI LR+KL + Sbjct: 180 LLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 209 >gi|306827976|ref|ZP_07461243.1| two component response regulator [Streptococcus pyogenes ATCC 10782] gi|304429895|gb|EFM32937.1| two component response regulator [Streptococcus pyogenes ATCC 10782] Length = 228 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR++AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARISAIFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|228918481|ref|ZP_04081925.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228950319|ref|ZP_04112489.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809337|gb|EEM55788.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228841166|gb|EEM86364.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 242 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 11/150 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 69 IEVCRKLREKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFL 128 Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V R E I + +GE PL +E +L + +N + K+Q Sbjct: 129 VLGSEAGDREQTRIEFKEISIDMKKYVVFKEGEEIPLTAKEMELLRFFASNPEQVFTKSQ 188 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 +F ++G D +E +N V HI KLRKK+ Sbjct: 189 LFRNVWG--DNYLEDDNTVMVHIRKLRKKI 216 >gi|229014694|ref|ZP_04171804.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228746600|gb|EEL96493.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 224 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 18/165 (10%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118 +R S+ P+I +S + + + G DD +NKP H ++A+V A+ RR Sbjct: 66 MRETSKAPIIFLSSRNTPMDMVMAMNMGGDDFINKPFHTDVLMAKVNALLRRTYTYIEDI 125 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 LKV + ++ ++ E L + E IL+ LM N+G V++T+I ++ Sbjct: 126 ELKVIEHDGIVLNLKTYNVSN----VNEEITLTKNEFIILKLLMQNKGTVVSRTKIMRSL 181 Query: 178 YGLFDEA-VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + DE V+EN + +I+++RKK+ + LG D + +K+ GY I Sbjct: 182 WA--DERFVDENTLTVNIARIRKKITD-LGKDGFITTKKGYGYII 223 >gi|171780121|ref|ZP_02921025.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281469|gb|EDT46904.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 236 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + +R S +P+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 61 LEVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120 Query: 121 ------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 SN+ G +++ D + +GE L RE +L +L + G+ + Sbjct: 121 NIESAVAEENASSSNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVM 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ I +LR+K+ + Sbjct: 181 TREYLLETVWG-YDYFGDVRTVDVTIRRLREKIED 214 >gi|152983128|ref|YP_001354753.1| two-component response regulator [Janthinobacterium sp. Marseille] gi|151283205|gb|ABR91615.1| two-component response regulator [Janthinobacterium sp. Marseille] Length = 239 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 16/156 (10%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPI 131 +P+I ++ +++ + SG DD V KP E+ AR+ A+ RR K + GP+ Sbjct: 92 LPVIVLTARDAIEYRIAGLQSGADDYVLKPFDLGELAARIHAVVRRSKGRATQEITAGPL 151 Query: 132 RVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 R+ DP+ + ++ L RRE IL +L G +A + + ++G D + Sbjct: 152 RL-----DPQYGQVWLNEKLIALSRREFDILIHLANAAGHWLAPSTLRDRVFG-EDIQIS 205 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 N + HI +R+ KLG + +++ R LG+ + W Sbjct: 206 SNALNVHIHNIRR----KLGAEAIETSRGLGFRLGW 237 >gi|15964268|ref|NP_384621.1| phosphate regulon transcriptional regulatory protein [Sinorhizobium meliloti 1021] gi|150395352|ref|YP_001325819.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|307307005|ref|ZP_07586744.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307320659|ref|ZP_07600072.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|6685724|sp|Q52990|PHOB_RHIME RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|152404|gb|AAB42026.1| phosphate regulatory protein [Sinorhizobium meliloti] gi|15073445|emb|CAC45087.1| Phosphate regulon transcriptional regulatory protein [Sinorhizobium meliloti 1021] gi|150026867|gb|ABR58984.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] gi|306893694|gb|EFN24467.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306901945|gb|EFN32544.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 227 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + +G DD V KP E++ARV A+ R Sbjct: 62 IELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLR 121 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R K V + G I + + + L E R+LE+LM++ G+ +++Q+ Sbjct: 122 RAKPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK L D + + R GYS++ Sbjct: 182 GVWG-HDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLE 226 >gi|332974891|gb|EGK11804.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 233 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/197 (24%), Positives = 94/197 (47%), Gaps = 5/197 (2%) Query: 26 LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85 LE + LE EWL+ E ++ ++ + K +L R IR +P+I ++ LQ Sbjct: 37 LEAADGLEAAEWLEKEPIE-LAVVDIMMPNKDG--YQLCREIREDYDLPVILLTAKDQLQ 93 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQG 144 + +G DD + KP +E+L R+ A+ RR +VS + + + G Sbjct: 94 DKEAGYRAGTDDYLTKPFEPKELLFRIKALLRRYQRVSADIIVLNGTAIDRKSYEVRSDG 153 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 + LP +E +L L + G+ + ++ ++G D A ++ V+ HI +LR++ ++ Sbjct: 154 QTLLLPLKEFELLSQLGSYPGRVFTREELIRLVWGP-DFAGDDRTVDVHIKRLRRRFADR 212 Query: 205 LGFDPVDSKRFLGYSID 221 + + R +GY ++ Sbjct: 213 AEDFVIQTVRGVGYKLE 229 >gi|320106762|ref|YP_004182352.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925283|gb|ADV82358.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 225 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 103/201 (51%), Gaps = 16/201 (7%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPR 65 +RAL+++G+ + DG EG + L + + D + ++ FL G +VLE R Sbjct: 17 ERALIEEGHRVVVSGDG--REGAD-------LLLTGQFDAALLDIFLPEMDGFEVLE--R 65 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 + + P++ ++ ++ + FD G DD + KP +LARV AI RR+ + Sbjct: 66 VRTQQCKTPILVLTAVDAVPKIVRAFDLGADDYLVKPFIVEILLARVGAIARRVANHSEE 125 Query: 126 A-ETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 A ETG + V GR + G+ L +++ +L+ LM +G + Q+ A +G+ + Sbjct: 126 APETGSV-VLDRGRRLALRHGKEIALTKKQFELLDTLMRRKGLITTREQLIEAGWGIQAD 184 Query: 184 AVEENVVESHISKLRKKLRNK 204 V+EN ++ +I LR KL ++ Sbjct: 185 -VKENTLDVYIHGLRAKLEDQ 204 >gi|298491318|ref|YP_003721495.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233236|gb|ADI64372.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 236 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 24/203 (11%) Query: 8 RALVKDGYI---ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 R L+++GYI A G +G L + D+ ++ L GK LE+ Sbjct: 24 RVLIREGYIVDAAYHGINGSQLAQIGTY------------DLLILDWMLPGKTG--LEIC 69 Query: 65 RIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 + +R ++ P++ ++ +L + D+G DD + KP RE+LARV A+ RR + Sbjct: 70 QELRRQAKTTPVLFLTAKDTLDDRVQGLDAGADDYLIKPFELRELLARVRALLRRCSIEF 129 Query: 124 NRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 T + V D E QG + L ++E ++L+Y M G+ ++ +QI ++ Sbjct: 130 YNTTTAHLVVADLELDVENQIAYRQGRIIELSQKESQLLQYFMEYTGQLLSHSQIMQHLW 189 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 + NV+ + I LR+K+ Sbjct: 190 P-NGQQPGSNVIAALIRLLRRKI 211 >gi|237735099|ref|ZP_04565580.1| two-component system response regulator [Mollicutes bacterium D7] gi|229381875|gb|EEO31966.1| two-component system response regulator [Coprobacillus sp. D7] Length = 226 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 7/160 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122 IR +S VP++ IS + +G DD + KP +L ++ AI RR + Sbjct: 69 IRENSTVPILFISSREQNADKILALSAGGDDYIEKPFDLELLLVKIKAILRRTYEYKHLE 128 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + GR Q +V L + E +I+ L+ RG V + Q+ ++ D Sbjct: 129 KEYLDEDTSYDIVRGRFV-YQNKVLELTKSEGKIMSTLLGQRGNWVTREQLMMTLWNT-D 186 Query: 183 EAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 E V + + HIS+LR KL+ G D + +K+ +GY ID Sbjct: 187 EFVTDATLSVHISRLRNKLKELTNGKDIIKTKKGVGYYID 226 >gi|226349583|ref|YP_002776697.1| OmpR family two-component response regulator [Rhodococcus opacus B4] gi|226245498|dbj|BAH55845.1| OmpR family two-component response regulator [Rhodococcus opacus B4] Length = 224 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/186 (30%), Positives = 85/186 (45%), Gaps = 21/186 (11%) Query: 45 DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 DV ++ L GK G V+ R R P++ +S D FD G DD + KP Sbjct: 46 DVVVLDIMLPGKHGYDVVREMR--RQQVWTPVLMLSAKDGEYDLADAFDLGADDYLIKPF 103 Query: 104 HHREILARVAAIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRER 154 ++AR+ A+ RR L V+ + RV +GE L RE Sbjct: 104 SFVVLIARLRALVRRGAPPRPPVLSVAGLSLDPAMRRV--------TRGETRLQLTPREY 155 Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214 +LE+LM + G V K I A++ E ++N+VE +I LR+K+ G +D+ R Sbjct: 156 SVLEFLMRHAGSVVTKHDILQAVWDANYEG-DDNIVEVYIGYLRRKIDAPFGTTSIDTVR 214 Query: 215 FLGYSI 220 +GYS+ Sbjct: 215 GVGYSM 220 >gi|261420883|ref|YP_003254565.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319768554|ref|YP_004134055.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261377340|gb|ACX80083.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317113420|gb|ADU95912.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 237 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 11/170 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R +P+I ++ S + + G DD V KP RE+LARV A RR Sbjct: 62 MEVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHA 121 Query: 121 VSNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + N+ E GP+ + D + +GE L RE +L YL + G+ + + Sbjct: 122 QTANQEEGENETNEIVIGPLVIRPDAYIVQKRGETIELTHREFELLHYLAKHIGQVMTRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ N + + ++R +GY + Sbjct: 182 HLLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230 >gi|218289692|ref|ZP_03493900.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218240149|gb|EED07333.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 239 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/213 (23%), Positives = 103/213 (48%), Gaps = 15/213 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNS--LEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD A ++ F G +E + + +E+ Q +++ D+ ++ L G Sbjct: 5 LVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLML--PGMDG 62 Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R ++P+I ++ + + G DD V KP RE++AR A+ RR Sbjct: 63 LEVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLRRT 122 Query: 120 KVSNNRAE-TGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + A+ T +V G + V+G++ +E +L+Y M N +++ Sbjct: 123 ESREDDAQPTSSGKVLRAGNIVMDVARHEVRVRGQLVEFTPKEFELLQYFMENPEHVLSR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 Q+ ++G + A + +V+ H+S LR+K+ + Sbjct: 183 DQLLDRVWG-YSAATDTRIVDVHVSHLREKIED 214 >gi|167630854|ref|YP_001681353.1| two-component response regulator resd [Heliobacterium modesticaldum Ice1] gi|167593594|gb|ABZ85342.1| two-component response regulator resd [Heliobacterium modesticaldum Ice1] Length = 240 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 13/149 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-- 122 R IR S+VP++ ++ + F+ G DD V KP RE++ RV A+ RR + Sbjct: 68 RKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRRSSTPP 127 Query: 123 --NNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + E P + ++ +GR V+GE L E +L YL N G+ +++ Sbjct: 128 QRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAGRVLSRDL 187 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + ++G ++ A + V++H+ +LR+KL Sbjct: 188 LLDRVWG-YEFAGDSRTVDTHVRRLREKL 215 >gi|160886208|ref|ZP_02067211.1| hypothetical protein BACOVA_04215 [Bacteroides ovatus ATCC 8483] gi|237723017|ref|ZP_04553498.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|260173666|ref|ZP_05760078.1| two-component system response regulator [Bacteroides sp. D2] gi|293372570|ref|ZP_06618952.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|299146715|ref|ZP_07039783.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] gi|315921928|ref|ZP_07918168.1| two-component system response regulator [Bacteroides sp. D2] gi|156108093|gb|EDO09838.1| hypothetical protein BACOVA_04215 [Bacteroides ovatus ATCC 8483] gi|229447539|gb|EEO53330.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|292632379|gb|EFF50975.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|298517206|gb|EFI41087.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] gi|313695803|gb|EFS32638.1| two-component system response regulator [Bacteroides sp. D2] Length = 229 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 8/140 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN--- 124 + ++VP+I I+ + T+ F+ G DD ++KP RE++ARV A+ RR + Sbjct: 72 KKTAKVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTVTTETERV 131 Query: 125 --RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 R + + + + E PL ++E IL L+ N+G+ ++ I + I+ D Sbjct: 132 PERLTYQSLVIDITKKKVSIDDEEVPLTKKEFEILLLLVQNKGRVFSREDILARIWS--D 189 Query: 183 EA-VEENVVESHISKLRKKL 201 E V + ++ +I++LRKK+ Sbjct: 190 EVYVLDRTIDVNITRLRKKI 209 >gi|227532778|ref|ZP_03962827.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189612|gb|EEI69679.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|327383868|gb|AEA55344.1| VicR protein [Lactobacillus casei LC2W] gi|327387049|gb|AEA58523.1| VicR protein [Lactobacillus casei BD-II] Length = 238 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 13/212 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D I F D + + + EE L+ E I L+ L Sbjct: 6 ILVVDDEKPISD--IVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKIDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 64 EVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTAS 123 Query: 122 SNNRA----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 SN + E G + + D +GE L RE +L YL + G+ + + Sbjct: 124 SNAASNEEDEANKELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ + +LR+K+ + Sbjct: 184 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIED 214 >gi|30023491|ref|NP_835122.1| two-component response regulator yycF [Bacillus cereus ATCC 14579] gi|206970303|ref|ZP_03231256.1| DNA-binding response regulator YycF [Bacillus cereus AH1134] gi|218232846|ref|YP_002370241.1| DNA-binding response regulator YycF [Bacillus cereus B4264] gi|228961729|ref|ZP_04123333.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|229153624|ref|ZP_04281801.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|229181712|ref|ZP_04309035.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|296505894|ref|YP_003667594.1| two-component response regulator yycF [Bacillus thuringiensis BMB171] gi|29899052|gb|AAP12323.1| Two-component response regulator yycF [Bacillus cereus ATCC 14579] gi|206734880|gb|EDZ52049.1| DNA-binding response regulator YycF [Bacillus cereus AH1134] gi|218160803|gb|ACK60795.1| DNA-binding response regulator YycF [Bacillus cereus B4264] gi|228601745|gb|EEK59243.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|228629853|gb|EEK86505.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|228797964|gb|EEM44973.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|296326946|gb|ADH09874.1| two-component response regulator yycF [Bacillus thuringiensis BMB171] gi|326943264|gb|AEA19160.1| two-component response regulator yycF [Bacillus thuringiensis serovar chinensis CT-43] Length = 235 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 20/219 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ + DG +E ++ + E + ++ G+ LE+ R IR Sbjct: 23 LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 71 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122 S++P+I ++ S + + G DD V KP RE+LARV A RR K Sbjct: 72 SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 131 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N GPI + + + E L RE +L YL + G+ + + + ++G +D Sbjct: 132 NTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 190 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + V+ + +LR+K+ + + ++R +GY + Sbjct: 191 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229 >gi|21954779|ref|NP_665764.1| ANL23 [Synechococcus elongatus PCC 7942] gi|81230366|ref|YP_398748.1| response regulator receiver domain-containing protein [Synechococcus elongatus PCC 7942] gi|21913201|gb|AAM81151.1|AF441790_22 ANL23 [Synechococcus elongatus PCC 7942] gi|81170338|gb|ABB58676.1| response regulator receiver domain protein (CheY-like) [Synechococcus elongatus PCC 7942] Length = 224 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 15/145 (10%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118 R+ +A P++ ++ LQ + D+G DD + KP E+LARV A+ RR Sbjct: 65 RLRQAQDSTPVLVLTARDGLQDLVQGLDAGADDYLVKPFRLAELLARVRALLRRSPQTQT 124 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 L+V R + V D P PL RE ++LE LM + G+ +++ Q+ Sbjct: 125 PLLQVGRLRLDPAQATVQVDDYSP------MPLTAREFQLLEALMHHPGQILSRDQLLDQ 178 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++ + D NVV + + LR+KL Sbjct: 179 LWPM-DAEPSSNVVAAQVRLLRRKL 202 >gi|320325554|gb|EFW81616.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. glycinea str. B076] gi|320327160|gb|EFW83174.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. glycinea str. race 4] gi|330879271|gb|EGH13420.1| DNA-binding response regulator TctD [Pseudomonas syringae pv. glycinea str. race 4] Length = 223 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 74/137 (54%), Gaps = 3/137 (2%) Query: 67 IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN- 124 +RA S+ +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + Sbjct: 66 LRARSKNLPVLMLTARSDVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLGGEW 125 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + G + D R + E+ L RE+ +LE L+A G+ ++K Q+ + ++GL DE Sbjct: 126 QQRCGVLAYDLDTRRFTLGEELLALTSREQAVLEALIARPGRVMSKEQLAAQVFGL-DEE 184 Query: 185 VEENVVESHISKLRKKL 201 + +E ++ +LRKKL Sbjct: 185 ASPDAIEIYVHRLRKKL 201 >gi|298369911|ref|ZP_06981227.1| DNA-binding response regulator [Neisseria sp. oral taxon 014 str. F0314] gi|298281371|gb|EFI22860.1| DNA-binding response regulator [Neisseria sp. oral taxon 014 str. F0314] Length = 223 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 22/169 (13%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + QVP++ ++ L + L D G DD + KP E+ AR+ AI RR Sbjct: 63 LARLRSSGCQVPVLIVTARDDLHSRLHGLDGGADDYIVKPFDMAELQARMRAILRR---- 118 Query: 123 NNRAETGPIRVFSDG---RDP-----EVQGEVFP--LPRRERRILEYLMANRGKRVAKTQ 172 N ++ P+ S+G +P ++ G+ P L +E +L+ LM G +++ Sbjct: 119 -NNGQSQPL--LSNGVLTLNPATYQVQIAGQTEPVALSNKEFAVLQALMMRPGTIFSRSD 175 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + IYG + E VE N V+ I LRK KLG + + + R +G+ ++ Sbjct: 176 LEDKIYG-WGEEVESNAVDFLIHSLRK----KLGKEHIRNVRGVGWLVE 219 >gi|304317311|ref|YP_003852456.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778813|gb|ADL69372.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 231 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 12/156 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P++ +S S + F G DD V KP +E+LAR+ A RR K Sbjct: 61 EVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120 Query: 122 SNNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E G I + R+ V+G L ++E +LE L + G+ +K QI Sbjct: 121 AILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 + ++G FD + V HI +R K+ N DP Sbjct: 181 YEKVWG-FDAEGDTTTVTEHIKNIRAKIEN---LDP 212 >gi|228924210|ref|ZP_04087481.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228942615|ref|ZP_04105147.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955717|ref|ZP_04117712.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228975545|ref|ZP_04136097.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982181|ref|ZP_04142470.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|229035124|ref|ZP_04189070.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] gi|229051135|ref|ZP_04194679.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|229072931|ref|ZP_04206127.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|229082674|ref|ZP_04215131.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|229112879|ref|ZP_04242410.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|229130712|ref|ZP_04259665.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|229148016|ref|ZP_04276355.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|229164416|ref|ZP_04292345.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] gi|229193717|ref|ZP_04320658.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|228589742|gb|EEK47620.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|228619066|gb|EEK75963.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] gi|228635441|gb|EEK91932.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|228652729|gb|EEL08614.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|228670558|gb|EEL25871.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|228700635|gb|EEL53164.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|228710177|gb|EEL62155.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|228722198|gb|EEL73599.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|228728190|gb|EEL79220.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] gi|228777533|gb|EEM25811.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|228784155|gb|EEM32182.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228803945|gb|EEM50569.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817041|gb|EEM63134.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228835428|gb|EEM80798.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 234 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 20/219 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ + DG +E ++ + E + ++ G+ LE+ R IR Sbjct: 22 LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122 S++P+I ++ S + + G DD V KP RE+LARV A RR K Sbjct: 71 SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEE 130 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N GPI + + + E L RE +L YL + G+ + + + ++G +D Sbjct: 131 NTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 189 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + V+ + +LR+K+ + + ++R +GY + Sbjct: 190 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228 >gi|51891828|ref|YP_074519.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855517|dbj|BAD39675.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 225 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 29/212 (13%) Query: 22 DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGI 78 D + EG+ E ++ AR A + ++ G E R IRA S VP++ + Sbjct: 21 DYLEAEGYAVTGVETGEEAVARVRDGAFDCVVLDVMLPGMSGFEACRAIRAFSDVPILFL 80 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI------- 131 S + G DD V KP E++ARV A+ RR + S + GP+ Sbjct: 81 SARGEDADKIRGLGLGGDDYVAKPFSPPEVVARVKALLRRYRPSAEQWRFGPLTIDPKGY 140 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 RV+ DGR+ + +E +L +L + G+ ++ Q++ ++G F + V Sbjct: 141 RVWRDGRE-------VAMTAKELELLIFLARHPGQVFSREQLYDRVWGDFGDP---RTVT 190 Query: 192 SHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 HI+++R+K+ DP + + R LGY Sbjct: 191 VHINRIREKIEA----DPSRPQFIQTVRGLGY 218 >gi|83942434|ref|ZP_00954895.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. EE-36] gi|83846527|gb|EAP84403.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. EE-36] Length = 229 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 3/151 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 +P+I +S T+ ++G DD V KP RE++ARV RR++ +++ A Sbjct: 79 NIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRRVRPASSGAALSYA 138 Query: 132 RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + D V L E R+L L+ G+ ++ Q+ ++G D V+ Sbjct: 139 DITLDTERHRVNRAANELKLGPTEYRLLVTLLERPGRVFSRDQLLDHVWG-RDIYVDTRT 197 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+ HI++LRK L + G DP+ + R GY++ Sbjct: 198 VDVHIARLRKALTSHGGDDPIRTVRGAGYAL 228 >gi|325284175|ref|YP_004256716.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324315984|gb|ADY27099.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 219 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 6/167 (3%) Query: 35 EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94 E+WL + A + + G G L+L +R +S P++ +S +Q + ++G Sbjct: 38 EDWLGTHAPQLILLDLNLPDGDG---LDLVARLRQYSSTPVLVLSARSDVQQRVAGLNAG 94 Query: 95 VDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154 DD + KP E+ AR+ A+ RR S G + + V + L E Sbjct: 95 ADDYLTKPFAMPELEARITALLRR-TASGGGVNLGNTSLSTSSLTMTVGDQHINLTEHEA 153 Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 RILE +M + ++ I S +YG E N VE IS+LRKKL Sbjct: 154 RILELMMRTPERVFSRADIESHLYGW--ETPSSNSVEVRISQLRKKL 198 >gi|325680030|ref|ZP_08159598.1| putative response regulator MprA [Ruminococcus albus 8] gi|324108267|gb|EGC02515.1| putative response regulator MprA [Ruminococcus albus 8] Length = 219 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 20/227 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIG- 55 ++IDD D YI ++ ++ EG+ L ++ + D+ ++ L G Sbjct: 4 ILVIDD-----DIYIGDMLEEALNKEGYGVLRAYSGTEALLVVERKKPDLILLDLMLPGL 58 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 GE++L P+I +P+I +S + + +G D V KP + E+ AR+A Sbjct: 59 SGEELL--PKI----KDIPVIVVSAKADVADKVGLLMAGACDYVTKPFNIAELTARIAVQ 112 Query: 116 YRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + + A G + + D + GE L R E IL+ LM N V +T I Sbjct: 113 LRMAQSKGDAAALTFGDLTLHCDTLTAAINGEEVRLTRTECAILKLLMQNPNTPVGRTTI 172 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I + E ++ HIS +RKKL G D +++ +G+ + Sbjct: 173 LDKI-SIDTPDCTERSLKQHISNMRKKLEAVNGHDYIEAVYGIGFKM 218 >gi|304406662|ref|ZP_07388317.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344195|gb|EFM10034.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 4/159 (2%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKV 121 R+ A S VP++ ++ +Q + D G DD + KP E+LARV A+ RR + Sbjct: 67 RVREAGSGVPVLMLTAMDDVQDRVKGLDLGADDYLVKPFALEELLARVRALLRRKPDRQE 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ R + + + D R+ G L +E +L M N + + + I I+G + Sbjct: 127 TDGRLQFEDMTLDLDSREAIRGGRRIDLTAKEFDLLHLFMQNPRRVLTRDSIMDKIWG-Y 185 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + E NV+E +I+ LR+K + + + R GY + Sbjct: 186 DYSGESNVLEVYIAMLRQKTEDGTAKRLIQTVRGTGYVL 224 >gi|282874751|ref|ZP_06283630.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|281296467|gb|EFA88982.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] Length = 221 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 5/151 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAE 127 S +P+I ++ +L T L F G D + KP + E++ R+ + + +S N + Sbjct: 69 SNIPIIFLTAKDNLDTRLKCFSLGAKDYLPKPFYMEELIIRIKNVLNQSHSQSLSPNIKK 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 T + ++ D +V + ++E I++ L N +K QI+ +I ++ Sbjct: 129 TKELIIYYDTYRIDVNNMTIDITKKEFEIIKLLSLNPQYYFSKEQIYDSIN--LNKTGNT 186 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VV HI K+RKKL F+ +D+K +GY Sbjct: 187 QVVAEHIRKIRKKLSCYSRFEYIDTKWGVGY 217 >gi|300022658|ref|YP_003755269.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299524479|gb|ADJ22948.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 262 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 5/153 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAET 128 ++ P++ +S + + +G DD + KP + E+LARV A+ RR + R Sbjct: 107 NRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTAPEEQQTRISV 166 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187 G + + GE L RE R+LEYLM + G+ V +T + ++ FD + Sbjct: 167 GDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVWDYHFDP--QT 224 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NV++ H+S+LR K+ + + R GY+I Sbjct: 225 NVIDVHVSRLRAKIDKNFDKPLLHTVRGAGYTI 257 >gi|134278555|ref|ZP_01765269.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|134250339|gb|EBA50419.1| DNA-binding response regulator [Burkholderia pseudomallei 305] Length = 237 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/137 (24%), Positives = 71/137 (51%), Gaps = 3/137 (2%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNN 124 + +S +P++ +++ + ++G DD V KP +E +ARV A+YRR + + Sbjct: 68 KNYSNIPVLILTNAILESEVVAALEAGADDYVIKPPRKQEFVARVKALYRRATETRTLSE 127 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E GP ++ + + E L +E I+E L+ N G+ V++ ++ ++G + Sbjct: 128 LIEIGPYKIQTSEKVVYFHHEAITLSPKEYEIIELLVRNIGQIVSRDKMVCQVWGRLPDE 187 Query: 185 VEENVVESHISKLRKKL 201 +++HI ++R+KL Sbjct: 188 AAFRTLDTHIYRIRRKL 204 >gi|126650356|ref|ZP_01722584.1| two-component response regulator [Bacillus sp. B14905] gi|126593006|gb|EAZ86988.1| two-component response regulator [Bacillus sp. B14905] Length = 241 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 8/148 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL IR H+ P+I +S + L G DD + KP + E++AR+ I RR K Sbjct: 65 FELCTEIRKHTNTPIIFVSARSTDFDKLTGLGIGGDDYITKPFNPLEVVARIKVILRRQK 124 Query: 121 V--SNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + S+++ ++ +PE V ++ +E +L + N + +Q+ Sbjct: 125 MYESSHQQQSSKFDFGYFALNPESATLIVNNQLVDCTAKELELLHFFCKNPNRIFTTSQL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 + ++G D EE V HISKLRKKL Sbjct: 185 YEFVWG-NDVYGEEKTVTIHISKLRKKL 211 >gi|56422009|ref|YP_149327.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|297531668|ref|YP_003672943.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|56381851|dbj|BAD77759.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|297254920|gb|ADI28366.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 237 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 82/170 (48%), Gaps = 11/170 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R +P+I ++ S + + G DD V KP RE+LARV A RR Sbjct: 62 MEVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHA 121 Query: 121 VSNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + N+ E GP+ + D + +GE L RE +L YL + G+ + + Sbjct: 122 QTANQEEGENETNEIVIGPLVIRPDAYVVQKRGETIELTHREFELLHYLAKHIGQVMTRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ N + + ++R +GY + Sbjct: 182 HLLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230 >gi|307297684|ref|ZP_07577490.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306916944|gb|EFN47326.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 239 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 15/153 (9%) Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 EL R +RA Q P+I +S + + G DD + KP RE+LAR+ A++R Sbjct: 63 FELVRNLRATEKFRQTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREVLARIRAVFR 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI---------LEYLMANRGKRV 168 R++ S E P ++ + RD E+ E + + R R + L +L N GK Sbjct: 123 RIQQSAQAKEERPKKILA--RDLEIDTEKYEVRVRNRMVNLTPLEFELLRFLAENEGKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ + ++G +D + V+ HI +LR K+ Sbjct: 181 SRDVLLDKLWG-YDYYGDTRTVDVHIRRLRTKI 212 >gi|299135367|ref|ZP_07028557.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298589775|gb|EFI49980.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 220 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 77/149 (51%), Gaps = 8/149 (5%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 +P++ ++ S +D D+G DD + KP E+LAR+ +I RR + + Sbjct: 72 HMPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRR-SAGHGSSIMSAG 130 Query: 132 RVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + D R +V +G L E R++ +L+ NRG+ V+ +I +YG +E + N Sbjct: 131 EITLDERQMKVTRRGVPITLSPLEYRLVAHLLRNRGRVVSPQEIDENVYGHGEEH-DSNT 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E + ++RK KLG D ++++R GY Sbjct: 190 LEVLVGRVRK----KLGADAIETRRGFGY 214 >gi|209964019|ref|YP_002296934.1| two-component transcriptional regulator, putative [Rhodospirillum centenum SW] gi|209957485|gb|ACI98121.1| two-component transcriptional regulator, putative [Rhodospirillum centenum SW] Length = 225 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 10/189 (5%) Query: 37 WLQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSG 94 +L +S D ++ L G+ G VLE ++RA +P + +S S++ + +G Sbjct: 38 FLAASESYDALVVDRMLPGRDGLSVLE---VLRATGNGIPALVLSALSSVEDRVKGLRAG 94 Query: 95 VDDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRR 152 DD + KP E+LAR+ A+ RR + S R + + + R G L R Sbjct: 95 ADDYLPKPFAFSELLARLDALERRARGSGPVTRLQVSDLEMDLLARSVSRAGRPVDLLPR 154 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 E +LE+LM N G V +T + ++ FD + NV++ HI++LR+K+ + Sbjct: 155 EFLLLEFLMRNAGHVVTRTMLLERVWDYHFDP--QTNVIDVHIARLRQKIDKDHPAPLIH 212 Query: 212 SKRFLGYSI 220 + R GY + Sbjct: 213 TVRGAGYVL 221 >gi|197302733|ref|ZP_03167787.1| hypothetical protein RUMLAC_01463 [Ruminococcus lactaris ATCC 29176] gi|197298315|gb|EDY32861.1| hypothetical protein RUMLAC_01463 [Ruminococcus lactaris ATCC 29176] Length = 244 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 20/169 (11%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + VP+I +S + + G DD V KP + E++ARV + RR + Sbjct: 80 IRETNSVPIIILSAKSEDSDKILGLNIGADDYVTKPFNPLELVARVKSQLRRYNELGGTS 139 Query: 127 --------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E G +R+ D ++ V GE+ L E IL L+ N+G+ + QI+ +I+ Sbjct: 140 QEQKEKVYEVGGLRINDDLKEVTVDGELVKLTPIEYNILLLLLKNQGRVFSINQIYESIW 199 Query: 179 GLFDEAV-EENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221 +EA+ +N V HI +R+K+ +P D + +GY ID Sbjct: 200 N--EEAIGADNTVAVHIRHIREKIE----INPKDPRYLKVVWGVGYKID 242 >gi|168179831|ref|ZP_02614495.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182669455|gb|EDT81431.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|322806384|emb|CBZ03953.1| two-component response regulator BceR [Clostridium botulinum H04402 065] Length = 223 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 93/191 (48%), Gaps = 6/191 (3%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFF 91 +EF +Q +E+ S I + + R IR S VP+I ++ S L Sbjct: 32 IEFNNIIQYVEKENASLILLDINLPEFDGYYICREIRKTSDVPIIIVTSRDSEVDELISM 91 Query: 92 DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV---QGEVFP 148 + G DD V KP + +LAR+ I +R + T + F+ + + Sbjct: 92 NLGADDFVTKPYNTEILLARITNILKRTYGNLKTNSTLNYKDFNLNLSNATLIYKDKSLE 151 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF- 207 L + E +IL YL+ NRG V + + ++ D V+++ + +I++LRKKL+ ++G Sbjct: 152 LTKNEVKILSYLINNRGNIVKRDSLMEYLWK-SDYFVDDSTLTVNINRLRKKLQ-EIGIE 209 Query: 208 DPVDSKRFLGY 218 +P++++R LGY Sbjct: 210 NPIETRRGLGY 220 >gi|218232857|ref|YP_002365106.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229148674|ref|ZP_04276925.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550] gi|218160814|gb|ACK60806.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228634796|gb|EEK91374.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550] Length = 237 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 15/162 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R + +P++ ++ + G DD + KP E++ARV A+ RR Sbjct: 63 IEVCKKLRDKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V SNN A+ F + E L +E +L++ +N G+ KTQ Sbjct: 123 VLGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213 +F ++ D +E +N V HI KLRKK+ DP + K Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218 >gi|163815559|ref|ZP_02206932.1| hypothetical protein COPEUT_01726 [Coprococcus eutactus ATCC 27759] gi|158449196|gb|EDP26191.1| hypothetical protein COPEUT_01726 [Coprococcus eutactus ATCC 27759] Length = 229 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 7/141 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL------K 120 IR +S VP+I ++ + + G DD V KP + E+LARV + RR + Sbjct: 67 IRENSNVPVIMLTAKSEDTDKVLGLEVGADDYVTKPFNPVELLARVKSQLRRYMQLGGGE 126 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ G I + + + GEV PL E IL+ LM N GK + +I+ A++ Sbjct: 127 TPKDKLVIGGIELDDKSKQVTLDGEVMPLTPTEYDILKLLMQNVGKVFSTKEIYRAVWK- 185 Query: 181 FDEAVEENVVESHISKLRKKL 201 D E V HI LR+K+ Sbjct: 186 EDPMGAEGSVAVHIRHLREKI 206 >gi|313891367|ref|ZP_07824983.1| putative sensory transduction protein RegX3 [Dialister microaerophilus UPII 345-E] gi|313120142|gb|EFR43318.1| putative sensory transduction protein RegX3 [Dialister microaerophilus UPII 345-E] Length = 234 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 96/186 (51%), Gaps = 13/186 (6%) Query: 45 DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D+ ++ L G+ G VL+ R +S +P++ ++ S + DSG DD + KP Sbjct: 47 DLILLDIMLPGEDGLCVLKKLRNTNEYSTIPIVMMTAKTSEYDIVKGLDSGADDYITKPF 106 Query: 104 HHREILARVAAIYRRLKVSNNRAETGP-IRVFSDGRDPEVQ-------GEVFPLPRRERR 155 E+++RV ++ RR N ++ P I + + E + EVF L +E + Sbjct: 107 GIMELISRVKSLLRRSNYGKNTSKEEPKILKYKNTIIDEAKHVVTENGKEVF-LTLKEFK 165 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 +L+YL+ N+G +++ +I ++ E +E V+ HI LRKK+++ + +++ R Sbjct: 166 LLQYLVINKGIVLSRDRIMEVVWDSPIE-IESRTVDMHIKSLRKKIKDCDKY--INTVRG 222 Query: 216 LGYSID 221 +GY ++ Sbjct: 223 IGYRLE 228 >gi|238797763|ref|ZP_04641257.1| KDP operon transcriptional regulatory protein kdpE [Yersinia mollaretii ATCC 43969] gi|238718404|gb|EEQ10226.1| KDP operon transcriptional regulatory protein kdpE [Yersinia mollaretii ATCC 43969] Length = 238 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/159 (33%), Positives = 74/159 (46%), Gaps = 20/159 (12%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S +P+I +S S + + D+G DD ++KP E+LARV RR S A Sbjct: 80 LRQWSAIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRRH--SGGSA 137 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E+ P+ F+D R GE L E R+L L+AN GK + + Q+ + ++G Sbjct: 138 ES-PLVNFADISVDLINRQVTRAGENLHLTPIEFRLLSALLANAGKVITQRQLLTQVWG- 195 Query: 181 FDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216 N VE H LR LR KL DP K L Sbjct: 196 ------PNYVE-HSHYLRIYMGHLRQKLETDPTRPKHLL 227 >gi|228905410|ref|ZP_04069365.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] gi|228968616|ref|ZP_04129601.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228791108|gb|EEM38725.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228854230|gb|EEM98933.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] Length = 234 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 20/217 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ + DG +E ++ + E + ++ G+ LE+ R IR Sbjct: 22 LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122 S++P+I ++ S + + G DD V KP RE+LARV A RR K Sbjct: 71 SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGSAEKEE 130 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N GPI + + + E L RE +L YL + G+ + + + ++G +D Sbjct: 131 NTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 189 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 + V+ + +LR+K+ + + ++R +GY Sbjct: 190 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGY 226 >gi|328944489|ref|ZP_08241951.1| phosphate regulon response regulator [Atopobium vaginae DSM 15829] gi|327491073|gb|EGF22850.1| phosphate regulon response regulator [Atopobium vaginae DSM 15829] Length = 246 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 13/168 (7%) Query: 63 LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + R +R+++Q +P+I I+ + + D+G DD + KP E+L+R+ A+ RR Sbjct: 74 ITRTLRSNAQWSHIPIIMITAKTTEMDMIRGLDNGADDYIRKPFSVMELLSRIRALLRRA 133 Query: 120 KVSNNRA--ETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + RV + DP V L +E +L YLM + G + Sbjct: 134 QTPAQMPADKYSVCRVGAIMLDPARHYVCVHDTPVNLTHKEYDLLHYLMLHEGLVFTREV 193 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + A++G FD E V+ HI LR+KL + + V + R +GY + Sbjct: 194 LMQAVWG-FDFEGESRTVDMHIKTLRQKLGDASCY--VHTVRGVGYCV 238 >gi|223983413|ref|ZP_03633599.1| hypothetical protein HOLDEFILI_00879 [Holdemania filiformis DSM 12042] gi|223964585|gb|EEF68911.1| hypothetical protein HOLDEFILI_00879 [Holdemania filiformis DSM 12042] Length = 232 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 14/170 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 +L R IR S VP+I ++ + D G DD + KP L+R+ A+ RR Sbjct: 62 DLCRQIRQTSTVPIIFLTAADEETEIIMGLDLGGDDYITKPFKLAVFLSRIHALLRRQEN 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + IRV R GE+ L E ++L LM N + + QI S ++ Sbjct: 122 FSPADRELASNGIRVQRLERSVYKNGELVNLTAGEYKLLCLLMENPNQVLTPEQILSKLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSIDWN 223 + V+ N + +I +LR K+ + DP D K+ LGY WN Sbjct: 182 DCDENYVDANTLTVYIRRLRAKIED----DPSDPKKIVTLRRLGYK--WN 225 >gi|197106149|ref|YP_002131526.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] gi|196479569|gb|ACG79097.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] Length = 223 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 9/159 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNR 125 R + P++ +S + +D +G DD + KP E++AR+ A+ RR N Sbjct: 68 REGDRTPVLFLSALGEVADRVDGLQAGADDYLVKPYAFPELIARIEALARRRDTGSVNTL 127 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 G + + R G+ L RE ++LE++M + G+ V +T + ++ FD Sbjct: 128 LRVGELEMDLIARTVHRAGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVWHYHFDP- 186 Query: 185 VEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221 + NV++ HIS+LR K+ GFD + + R GY +D Sbjct: 187 -QTNVIDVHISRLRSKIDK--GFDRPMLQTVRGAGYRLD 222 >gi|170288334|ref|YP_001738572.1| two component transcriptional regulator [Thermotoga sp. RQ2] gi|170175837|gb|ACB08889.1| two component transcriptional regulator, winged helix family [Thermotoga sp. RQ2] Length = 223 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 2/148 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130 P++ ++ ++ + + G DD + KP RE++ARV A+ RR S + + G Sbjct: 72 NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + G+ L ++E +ILEYL+ N+ + V K ++ ++ FD+ V +V+ Sbjct: 132 LILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS-FDDEVFSDVL 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 SHI LRKK+ + + R +GY Sbjct: 191 RSHIKNLRKKVDKGFKKKIIHTVRGIGY 218 >gi|116496230|ref|YP_807964.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191639755|ref|YP_001988921.1| Putative response regulator [Lactobacillus casei BL23] gi|239630681|ref|ZP_04673712.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067832|ref|YP_003789855.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116106380|gb|ABJ71522.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190714057|emb|CAQ68063.1| Putative response regulator [Lactobacillus casei BL23] gi|239526964|gb|EEQ65965.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300440239|gb|ADK20005.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] Length = 237 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 92/212 (43%), Gaps = 13/212 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D I F D + + + EE L+ E I L+ L Sbjct: 5 ILVVDDEKPISD--IVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKIDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 63 EVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTAS 122 Query: 122 SNNRA----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 SN + E G + + D +GE L RE +L YL + G+ + + Sbjct: 123 SNAASNEEDEANKELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ + +LR+K+ + Sbjct: 183 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIED 213 >gi|66046740|ref|YP_236581.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|63257447|gb|AAY38543.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|330973569|gb|EGH73635.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 220 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 13/166 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+L R +RA + +P++ ++ + D+G DD + KP E+ ARV A+ RR Sbjct: 60 LDLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR- 118 Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S RA E I + + QG P+ E ++L LM GK V + ++ + Sbjct: 119 --SQGRAQPLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +YG + + VE N +E I LRKKL +L + + R +GY ++ Sbjct: 177 TLYG-WQDKVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217 >gi|268610638|ref|ZP_06144365.1| two component transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 224 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 21/163 (12%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 ++ +S P+I I+ T+ F+ G DD + KP RE+LAR+ + RR + ++ Sbjct: 67 VKKNSDTPVIFITASADEACTVAGFEIGADDYIGKPFGTRELLARMKNVMRRAQKTSPLI 126 Query: 127 ETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + DP ++G ++ + E R+L +N+ + +++ ++ ++ L Sbjct: 127 NCGNVTI-----DP-IKGIIYKNGHELSMSALEYRMLLVFFSNKNQLLSRDRLAEELWSL 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGY 218 E V +N + +I +LR+K+ + DP D K R LGY Sbjct: 181 TKEFVSDNTLSVYIRRLREKIED----DPQDPKIIITVRGLGY 219 >gi|256544640|ref|ZP_05472012.1| phosphate regulon response regulator [Anaerococcus vaginalis ATCC 51170] gi|256399529|gb|EEU13134.1| phosphate regulon response regulator [Anaerococcus vaginalis ATCC 51170] Length = 219 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 +E+ + +R S +P+I ++ + +SG DD + KP E+++R+ A+ RR Sbjct: 59 IEILKEVREFSDIPIIMLTAKNDEYDKVLGLESGADDYITKPFSILELISRIKAVLRRSE 118 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K IRV R ++ GE L +E +L ++N G + + I+G Sbjct: 119 KKDGEHLSYKNIRVNIKKRTAKIDGEKIDLTYKEFEMLLLFLSNIGNVITREDFLLKIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E V+ HI+ LR KL++ G + + R LGY + Sbjct: 179 -YDYEGETRTVDVHIASLRNKLKSA-GI-HIKTVRNLGYKL 216 >gi|251811465|ref|ZP_04825938.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|251805017|gb|EES57674.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] Length = 217 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 5/151 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAE 127 S +P+I ++ +L T L F G D + KP + E++ R+ + + +S N + Sbjct: 65 SNIPIIFLTAKDNLDTRLKCFSLGAKDYLPKPFYMEELIIRIKNVLNQSHSQSLSPNIKK 124 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 T + ++ D +V + ++E I++ L N +K QI+ +I ++ Sbjct: 125 TKELIIYYDTYRIDVNNMTIDITKKEFEIIKLLSLNPQYYFSKEQIYDSIN--LNKTGNT 182 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VV HI K+RKKL F+ +D+K +GY Sbjct: 183 QVVAEHIRKIRKKLSCYSRFEYIDTKWGVGY 213 >gi|187919209|ref|YP_001888240.1| two component winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717647|gb|ACD18870.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 245 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 13/172 (7%) Query: 53 LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L+ G LE+ R RA ++ P+I S S + + G DD + KP E++AR Sbjct: 56 LMLPGVDGLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVAR 115 Query: 112 VAAIYRRLK--VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANR 164 V A+ RR+ +++ E G +R+ DP V G+ L RE +L Y + Sbjct: 116 VKALLRRVDALAKDSKIEAGSLRIAGLSIDPLTREAAVDGKPIELTPREFDLLYYFAQHP 175 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 GK ++ + +A++G E E+ V +HI++LR K+ DP +R L Sbjct: 176 GKVFSRMDLLNAVWGYQHEGY-EHTVNTHINRLRAKIEA----DPAQPERIL 222 >gi|154503393|ref|ZP_02040453.1| hypothetical protein RUMGNA_01217 [Ruminococcus gnavus ATCC 29149] gi|153796060|gb|EDN78480.1| hypothetical protein RUMGNA_01217 [Ruminococcus gnavus ATCC 29149] Length = 223 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 4/158 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP++ +S + + G DD V KP + A++ A+ RR + Sbjct: 67 IRQISSVPILFLSSASDNMNIVMAMNMGGDDFVEKPFDRNVLTAKIQALLRRAYSFTGQL 126 Query: 127 ETGPIR-VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 R V + D V GE L + + +IL+ LM N GK V + +I ++ DE Sbjct: 127 NVLEYRDVILNLNDAAVTFHGERMELTKNDFKILQILMENAGKIVKRDRIMERLWE-SDE 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++N + ++++LRKKL + D + +K+ +GY I+ Sbjct: 186 FIDDNTLTVNMTRLRKKLESIGICDFIATKKGIGYVIE 223 >gi|84685172|ref|ZP_01013071.1| DNA-binding response regulator [Maritimibacter alkaliphilus HTCC2654] gi|84666904|gb|EAQ13375.1| DNA-binding response regulator [Rhodobacterales bacterium HTCC2654] Length = 242 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 85/168 (50%), Gaps = 7/168 (4%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G +L R+ ++ P++ ++ S+ +D D DD + KP RE+ AR+ A Sbjct: 76 GSGTDLLR--RLRTGGNRTPVLMLTALVSVDNRVDALDLRADDYLVKPFDQRELEARLRA 133 Query: 115 IYRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR ++ + G + + GE L RRE +LE L+ + ++K ++ Sbjct: 134 LVRREAAQKSDTIQLGALSYSPSQMSATLDGEKVTLTRREAALLELLVRFPEQYLSKERL 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++ D V N +E +I++LRK+L + +G ++++R +GY I Sbjct: 194 YDGLFAFDDADVGLNAIELYIARLRKRLAGSSVG---IETQRGVGYRI 238 >gi|313200933|ref|YP_004039591.1| winged helix family two component transcriptional regulator [Methylovorus sp. MP688] gi|312440249|gb|ADQ84355.1| two component transcriptional regulator, winged helix family [Methylovorus sp. MP688] Length = 211 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 19/174 (10%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +L R +R + VP++ I+ +L+ + D G DD + KP E++AR+ A+ Sbjct: 49 GISILTTLRTMR--NPVPVMVITARDALEDRIQGLDIGADDYLVKPFELAELMARMRAVI 106 Query: 117 RRLK------VSNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVA 169 RR +SN PI R+ + G L +RE +LE L+ G ++ Sbjct: 107 RRHAGDGMPLLSNGWLTLNPIT-----REVAMASGICHTLTKREYTLLETLLIRPGAILS 161 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++++ + +YG + E VE N +E I LRKKL N + + R +G+ I N Sbjct: 162 RSELETRVYG-WGEEVESNAIEFLIHSLRKKLGNA----TIKNIRGVGWMISKN 210 >gi|229084948|ref|ZP_04217200.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228698264|gb|EEL50997.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 224 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 82/161 (50%), Gaps = 2/161 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL +R + +PL+ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 62 ELCYELRRYYDIPLLMLTAKGETSQKVKGFQLGTDDYLVKPFDPLELVVRVKALLKRYQI 121 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + G + + + V +V LP +E +L L + G+ ++ Q+ ++G Sbjct: 122 TVSQSIQVGNVLLNRKTFEVTVGEQVIILPLKEFELLFMLGSKIGRTCSREQLIEEVWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 181 YDFEGNERTLDVHINRLREKFQKETASFAIKTIRGLGYRLE 221 >gi|116250926|ref|YP_766764.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255574|emb|CAK06654.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 229 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 5/133 (3%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFP 148 ++G DD + KP E++ARV A+ RR V R + + + R+ G+V Sbjct: 95 LEAGGDDYLVKPFAFSELMARVNALGRRPPVQEQRTVLKVADLELDLIRREARRAGQVIE 154 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGF 207 L RE +LE LM G+ + KT + ++ FD + +VVE+HIS+LR K+ Sbjct: 155 LQPREFTLLEVLMRGEGRVITKTMLLERVWDFHFDP--KTSVVETHISRLRAKVDKPFQI 212 Query: 208 DPVDSKRFLGYSI 220 + + R GYS+ Sbjct: 213 QLLHTVRNTGYSL 225 >gi|159897333|ref|YP_001543580.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890372|gb|ABX03452.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 236 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 62/243 (25%), Positives = 106/243 (43%), Gaps = 49/243 (20%) Query: 2 FVLIDDRALVKD---------GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52 +L++D AL+ D GY L DGV+ G + L + + D+ ++ Sbjct: 4 ILLVEDEALLADTLRYNLEREGYTVLSASDGVT--GLD-------LARAEQPDLLILDVM 54 Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L + RI+R + +P++ ++ + + G DD V KP E+LARV Sbjct: 55 L--PKLDGFSVCRILRRETNIPIMMLTARQDEVDRIAGLELGADDYVIKPFSLGELLARV 112 Query: 113 AAIYRR------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160 AI RR L +N + +TG RVF D + L ++E +L L Sbjct: 113 RAILRRTDRQPTGVERELLTAANLKVDTGSRRVFRDNNE-------ITLAQKEFDLLVCL 165 Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRF 215 M NRG +++ + ++G +D + V+ H+ + LR K+ DP + + R Sbjct: 166 MRNRGMALSRDLLLERVWG-YDFPGDSRTVDVHV----RWLREKVEVDPSNPIYIQTVRG 220 Query: 216 LGY 218 +GY Sbjct: 221 IGY 223 >gi|19745448|ref|NP_606584.1| CovR [Streptococcus pyogenes MGAS8232] gi|19747562|gb|AAL97083.1| CovR [Streptococcus pyogenes MGAS8232] Length = 228 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ A +RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + PL +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEIPLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|291522191|emb|CBK80484.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 234 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 19/183 (10%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 ++ K + EL R+IR S +P+I I+D + + + G D V P + E++A V Sbjct: 54 MMMKSLNIYELIRVIRLKSNLPIILIADKENDANRILGLNLGADACVINPYNPLEVIAEV 113 Query: 113 AAIYRR---LKVSNN-RAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMAN 163 A+ RR L ET +RV D E G V L E +IL LM + Sbjct: 114 QAMLRRYYELGCGGRIPGETMVLRVGELVLDTEAFVLRKNGNVLSLTSAELKILAKLMRS 173 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGY 218 + KTQ+ I G + E ++ + HIS +R K+ + DP + K R LGY Sbjct: 174 PKRVFTKTQLCECINGRYYEN-DDRTMMVHISNIRAKIED----DPANPKYIKTVRGLGY 228 Query: 219 SID 221 ID Sbjct: 229 KID 231 >gi|260177202|gb|ACX33925.1| putative two-component regulatory system response regulator [uncultured prokaryote AT5] Length = 234 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +RA ++ +P+I ++ + +G DD + KP E+ ARV A+ R Sbjct: 63 IELCRRLRARAETKRLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELSARVRALLR 122 Query: 118 RLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R + A+ G + V + + G L E R+LE+LM G+ ++ Q+ Sbjct: 123 R-ALPERLADVLSFGDLEVDREKKRVSRAGRSVDLGPTEYRLLEFLMERPGRVFSREQLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++G ++E V+ H+ +LRK L DP+ + R GY++D Sbjct: 182 NGVWG-SQIYIDERTVDVHVGRLRKALNRGHETDPIRTVRGAGYALD 227 >gi|223674577|gb|ACN12984.1| PhoP [Streptomyces clavuligerus ATCC 27064] Length = 175 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 4/117 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 59 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ Sbjct: 119 PEEVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLI 175 >gi|212638357|ref|YP_002314877.1| OmpR family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212559837|gb|ACJ32892.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Anoxybacillus flavithermus WK1] Length = 261 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 13/139 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKV---------SNNRAETGPIRVFSDGRDPEVQG 144 G DD + KP RE++ARV AI RR + S++ G + +F D + Sbjct: 119 GADDYMTKPFSPREVVARVKAILRRTVIHGQEEKQEHSDDSLVVGQLEIFPDRYEAYFAQ 178 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 + L +E +L YL +G+ + + Q+ SA++ +D A + +V+ HIS LR K+ Sbjct: 179 KRLELTPKEFELLAYLAKYKGRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKIEQD 237 Query: 205 LGFDPVDSK--RFLGYSID 221 PV K R LGY ++ Sbjct: 238 TR-KPVYIKTIRGLGYKLE 255 >gi|145301166|ref|YP_001144007.1| two-component system blr regulon response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853938|gb|ABO92259.1| two-component system blr regulon response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 224 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 11/222 (4%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 L++D A + D I DG +E F + R D ++ L EL Sbjct: 8 LVEDEASIADTLIYALQTDGFEVEWFPLGQPLLTRLEQTRPDFLILDVGLPDISG--FEL 65 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 + +RA PL+ ++ L + G DD V KP RE+ ARV I RR + Sbjct: 66 CKQVRARCDTPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREVCARVRVILRR----S 121 Query: 124 NRAETGPIRVFSDGRDP---EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T P ++ + + G+ L R E +L+ LM G+ ++ Q+ ++ Sbjct: 122 QPVATQPSQLLALDEERARISFHGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWSG 181 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 +E+++ V++HI +R KLR + + + + R LGYS++ Sbjct: 182 AEESLDRT-VDTHIKTIRAKLRERDADANLILTHRGLGYSLE 222 >gi|145222334|ref|YP_001133012.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315442767|ref|YP_004075646.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145214820|gb|ABP44224.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315261070|gb|ADT97811.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 231 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 15/190 (7%) Query: 23 GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75 G+ L GF+ +++ E L+S+ + +A ++ VL+ ++ A + VP+ Sbjct: 24 GLRLSGFDVFTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 80 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPI 131 +S S+ + ++G DD + KP E++ARV A+ RR S+ GP+ Sbjct: 81 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATFSSETITVGPL 140 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V GR V G L +RE +L L ++ +++ Q+ ++G +D A + NVV+ Sbjct: 141 EVDIPGRRARVDGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 199 Query: 192 SHISKLRKKL 201 I LR+KL Sbjct: 200 VFIGYLRRKL 209 >gi|329929178|ref|ZP_08282964.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus sp. HGF5] gi|328936855|gb|EGG33290.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus sp. HGF5] Length = 256 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 19/165 (11%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNR 125 P+I ++ + + + G DD + KP E+LARV+A+ RR +K ++N+ Sbjct: 88 TPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSGHADEVKTTDNQ 147 Query: 126 AET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 G + ++ + + + G+ L +E +L YL G + + + + ++G FD Sbjct: 148 GNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRDDLMNVVWG-FD 206 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSIDWN 223 + V+ H+S LRKKL DP +DS R +GY + N Sbjct: 207 YIGGQRTVDVHVSSLRKKLE----LDPESAHIDSIRGVGYKLVVN 247 >gi|329906568|ref|ZP_08274423.1| response regulator transcription regulatory protein [Oxalobacteraceae bacterium IMCC9480] gi|327547258|gb|EGF32107.1| response regulator transcription regulatory protein [Oxalobacteraceae bacterium IMCC9480] Length = 222 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 2/141 (1%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R H QVP++ ++ ++Q + F+ G DD + KP E++AR+ A+ RR Sbjct: 61 EVVRRLRLHGMQVPVLLLTARDAIQDRVHGFELGADDYLVKPFSTLELVARLKALVRRSA 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + + R + RE +LEYLM + V+K QI AI Sbjct: 121 PKPIELSIGGLTLDTFARRAHIGTRSIEFSVREWAVLEYLMQQASRVVSKQQIIDAILP- 179 Query: 181 FDEAVEENVVESHISKLRKKL 201 + E + N VE ++S++R K+ Sbjct: 180 WGEDLTLNAVEVYVSRIRLKI 200 >gi|330819658|ref|YP_004348520.1| DNA-binding response regulator [Burkholderia gladioli BSR3] gi|327371653|gb|AEA63008.1| DNA-binding response regulator [Burkholderia gladioli BSR3] Length = 220 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 12/152 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128 +P I I+ +L + D+G DD + KP E+LAR+ A+ RR + RA+T Sbjct: 73 LPAIVITARDALSDRIAGLDAGADDYLVKPFALEELLARIRAVNRR---HSGRAQTTLSA 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G +R+ + G+ L +E +L LM + G +++ Q +Y + E +E N Sbjct: 130 GALRLDPVRHQVWLGGDEVTLSPKEFVMLHELMVDPGAVISREQFEERLYS-WGEEIESN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+ HI LRK KLG + + R +GY I Sbjct: 189 AVQVHIHNLRK----KLGHVAILTVRGVGYRI 216 >gi|298481877|ref|ZP_07000067.1| DNA-binding response regulator [Bacteroides sp. D22] gi|298272099|gb|EFI13670.1| DNA-binding response regulator [Bacteroides sp. D22] Length = 229 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 94/193 (48%), Gaps = 20/193 (10%) Query: 21 DDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------KGEKVLELPRIIRAHSQVP 74 ++G ++ NS E + + D+S+ L+ G K+ + + + ++VP Sbjct: 25 NEGYEVDTANSAE------EAMKMDISSYHLILLDVMMGEISGFKMANILKKDKKTAKVP 78 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-----RAETG 129 +I I+ + T+ F+ G DD ++KP RE++ARV A+ RR + R Sbjct: 79 IIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVLRRTVTTETERVPERLTYQ 138 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEEN 188 + + + + E PL ++E IL L+ N+G+ ++ I + I+ DE V + Sbjct: 139 SLVIDITKKKVSIDDEEVPLTKKEFEILLLLVQNKGRVFSREDILARIWS--DEVYVLDR 196 Query: 189 VVESHISKLRKKL 201 ++ +I++LRKK+ Sbjct: 197 TIDVNITRLRKKI 209 >gi|168178301|ref|ZP_02612965.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226948175|ref|YP_002803266.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182671135|gb|EDT83109.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226842363|gb|ACO85029.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 223 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 99/214 (46%), Gaps = 15/214 (7%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+GY ++ DG + L RE + I + ++ L ++IR Sbjct: 20 VLNKNGYKSIEAKDG-----------DSALDILYREYIDLIISDIMMPNMDGYTLTKLIR 68 Query: 69 -AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RA 126 +++ VP++ I+ + + F G DD + KPI E++ RV A+ RR ++ N R Sbjct: 69 ESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRSQIINERRI 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G D + + LP++E ++ L++ K + Q+ I+G+ E + Sbjct: 129 VIGETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIWGIESET-D 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+ HI++LR + ++ F+ + + R LGY + Sbjct: 188 PRTVDVHINRLRDRFKDNKDFNII-TIRGLGYKV 220 >gi|197124506|ref|YP_002136457.1| transcriptional regulator [Anaeromyxobacter sp. K] gi|196174355|gb|ACG75328.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. K] Length = 230 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 6/133 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAET-GPIRVFSDGRDPEVQGEVF 147 F+ G DD V KP RE++ R+ A+ RR + S E+ GPIRV + V G Sbjct: 94 FELGADDYVTKPFSVRELVLRLKAVLRRAGARPSERPPESVGPIRVDVESHRAYVDGAEV 153 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E ++L LM+ G+ ++ Q+ ++ + E VE V++H+ +LR+KL + G Sbjct: 154 VLTPLEFKLLTTLMSRLGRVQSREQLLEDVWEMSAE-VETRTVDTHVKRLREKLGS--GR 210 Query: 208 DPVDSKRFLGYSI 220 D +++ R +GY + Sbjct: 211 DLLETVRGIGYRL 223 >gi|71733837|ref|YP_275879.1| DNA-binding response regulator RstA [Pseudomonas syringae pv. phaseolicola 1448A] gi|298487945|ref|ZP_07005984.1| Transcriptional regulatory protein rstA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554390|gb|AAZ33601.1| DNA-binding response regulator RstA [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157496|gb|EFH98577.1| Transcriptional regulatory protein rstA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323421|gb|EFW79509.1| DNA-binding response regulator RstA [Pseudomonas syringae pv. glycinea str. B076] gi|320327618|gb|EFW83630.1| DNA-binding response regulator RstA [Pseudomonas syringae pv. glycinea str. race 4] gi|330876275|gb|EGH10424.1| DNA-binding response regulator RstA [Pseudomonas syringae pv. glycinea str. race 4] gi|330986740|gb|EGH84843.1| DNA-binding response regulator RstA [Pseudomonas syringae pv. lachrymans str. M301315] Length = 245 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 97/196 (49%), Gaps = 15/196 (7%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 VS+EG +L + + + D+ ++ L GE + R +R P++ ++ Sbjct: 32 VSIEGNGALAAARII--AEQPDLVILDLML--PGEDGFSICRSVRDRYDGPILMLTARTD 87 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN------NRAETGPIRVFSDG 137 + D+G DD V KP+H R +LAR+ A+ RR + R GP+ V + Sbjct: 88 DTDHIQGLDTGADDFVCKPVHPRVLLARIHALLRRSEAPQVPAAELRRLVFGPLVVDNAL 147 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 R+ ++ + L E +L L+AN G+ +++ +IF+A+ G+ + ++ ++ IS++ Sbjct: 148 REAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFTALRGVGYDG-QDRSIDVRISRI 206 Query: 198 RKKLRNKLGFDPVDSK 213 R K+G DP+ + Sbjct: 207 RP----KIGDDPIHPR 218 >gi|81429063|ref|YP_396063.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|4104595|gb|AAD10258.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78610705|emb|CAI55756.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 224 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 99/205 (48%), Gaps = 20/205 (9%) Query: 34 FEEW-LQSSAREDVSAI-EAFLIGKGEKVL---ELP--------RIIRAHSQVPLIGISD 80 E+W L++ +D I + FL K VL LP R IR S+VP+I IS Sbjct: 21 LEKWQLKAIIPDDFDTIFDRFLTDKPHLVLLDINLPVYDGFYWCRKIREVSKVPIIFISS 80 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSD 136 + + + G DD VNKP ++A++ A+ RR + + + E + + Sbjct: 81 RSTNMDMVMSMNMGGDDFVNKPFSMEVLIAKINALLRRTYNYVDQNTDVIEHNGLLINLQ 140 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENVVESHIS 195 +V V L + E ++L++LM G+ V++ ++ A++ DE V++N + +I+ Sbjct: 141 SGGAQVGDTVVDLSKNEYKLLQFLMRQHGQIVSREKLLRALWD--DERFVDDNTLTVNIN 198 Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220 +LRKK+ D + +K GY I Sbjct: 199 RLRKKIEQAGLEDYIQTKIGQGYII 223 >gi|238793866|ref|ZP_04637486.1| KDP operon transcriptional regulatory protein kdpE [Yersinia intermedia ATCC 29909] gi|238726769|gb|EEQ18303.1| KDP operon transcriptional regulatory protein kdpE [Yersinia intermedia ATCC 29909] Length = 192 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 14/156 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S +P+I +S S + + D+G DD ++KP E+LARV RR + + Sbjct: 34 LRQWSAIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRR---HSGGS 90 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + P+ F+D R GE L E R+L L+AN GK + + Q+ S ++G Sbjct: 91 QESPLVNFADISVDLINRQVTRAGENLHLTPIEFRLLSALLANAGKVITQRQLLSQVWG- 149 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 VE N ++ LR KL DP K L Sbjct: 150 -PNYVEHN---HYLRIYMGHLRQKLETDPTRPKHLL 181 >gi|238793011|ref|ZP_04636640.1| Transcriptional regulatory protein basR/pmrA [Yersinia intermedia ATCC 29909] gi|238727611|gb|EEQ19136.1| Transcriptional regulatory protein basR/pmrA [Yersinia intermedia ATCC 29909] Length = 220 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 6/155 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 R H +P++ ++ +L+ +D D+G DD + KP E+LARV A+ RR + S+N Sbjct: 68 RQHVTLPVLILTARDALEDRVDGLDAGADDYLIKPFALAELLARVRALIRRYQGQSDNLV 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + + + + +Q + + +E IL L+ G+ V + + +Y D+ + Sbjct: 128 QQDDLSLNLSTQQVCLQDQPLEVTPKEFAILSRLIMRAGQTVNRELLQQDLYTWNDD-LG 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 N +E HI LR+ KLG D + + R +GY ++ Sbjct: 187 SNTLEVHIHNLRR----KLGKDRIRTVRGIGYRLE 217 >gi|315646856|ref|ZP_07899971.1| hypothetical protein PVOR_15824 [Paenibacillus vortex V453] gi|315277786|gb|EFU41110.1| hypothetical protein PVOR_15824 [Paenibacillus vortex V453] Length = 232 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 10/150 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + + A +P+ I+ + + + G DD + KP RE++AR+ I RRL Sbjct: 63 LDICKKVTADYNIPIFMITAKSDITDKVLGLEFGADDYITKPFDLREVVARIRTILRRLD 122 Query: 121 VSNN--RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +N+ R E I + + R + G + L +E +L L +RGK ++ Sbjct: 123 QANHVEREEAQEVVIRFKCIEIIMEERLVKKDGSLIDLTPKEFDLLMTLYRHRGKIYTRS 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ ++G +D + V++HI +LRKKL Sbjct: 183 ELLDLVWG-YDFMGDTRTVDTHIQRLRKKL 211 >gi|293402553|ref|ZP_06646688.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304067|gb|EFE45321.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 220 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 3/137 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I ++ ++ + ++ +G DD + KP E+LAR+ R+ S+ Sbjct: 66 IRKQSKVPIIILTAKDTVDSKVNLLSAGADDYLCKPFDLEELLARIQVQLRKSDNSSELL 125 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV- 185 + + + + D ++ L + E ILE LM N + K +I+ Y D Sbjct: 126 QFKELTLNNRAYDAFIKSYSLYLTKHEYYILELLMKNPKRVFTKQEIYE--YAWNDSYYG 183 Query: 186 EENVVESHISKLRKKLR 202 ++ + +HIS +RKK++ Sbjct: 184 DDKTITTHISNIRKKIK 200 >gi|289628678|ref|ZP_06461632.1| DNA-binding response regulator RstA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648390|ref|ZP_06479733.1| DNA-binding response regulator RstA [Pseudomonas syringae pv. aesculi str. 2250] gi|330866025|gb|EGH00734.1| DNA-binding response regulator RstA [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 245 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 11/167 (6%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE + R +R P++ ++ + D+G DD V KP+H R +LAR+ Sbjct: 57 LMLPGEDGFSICRSVRDRYDGPILMLTARTDDTDHIQGLDTGADDFVCKPVHPRVLLARI 116 Query: 113 AAIYRRLKVSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 A+ RR + R GP+ V + R+ ++ + L E +L L+AN G+ Sbjct: 117 HALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGR 176 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +++ +IF+A+ G+ + ++ ++ IS++R K+G DP+ + Sbjct: 177 TLSREEIFTALRGVGYDG-QDRSIDVRISRIRP----KIGDDPIHPR 218 >gi|227820734|ref|YP_002824704.1| phosphate regulon transcriptional regulatory protein PhoB [Sinorhizobium fredii NGR234] gi|227339733|gb|ACP23951.1| phosphate regulon transcriptional regulatory protein PhoB [Sinorhizobium fredii NGR234] Length = 227 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + +G DD V KP E++ARV A+ R Sbjct: 62 IELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLR 121 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R K V + G I + + + L E R+LE+LM++ G+ +++Q+ Sbjct: 122 RAKPEVLSTVLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK L D + + R GYS++ Sbjct: 182 GVWG-HDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLE 226 >gi|225378771|ref|ZP_03755992.1| hypothetical protein ROSEINA2194_04441 [Roseburia inulinivorans DSM 16841] gi|225209363|gb|EEG91717.1| hypothetical protein ROSEINA2194_04441 [Roseburia inulinivorans DSM 16841] Length = 217 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RL 119 +E+ + +R S++P+I ++ +T + FD+ DD + KP +L R+ A+ R R Sbjct: 60 IEVLKELRTFSELPVIMLTAVTDEETQVQTFDNLADDYICKPFSLILLLKRIEALLRARY 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K N + FS R + + P +E ++L L+ N G+ V++ QI I+G Sbjct: 120 KTENTWKYKDAVVDFSGYRATYLGKDAAVTP-KEIKLLAVLLENAGQVVSRDQILDRIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E+ + VV+ ++ LRKKL+ D + + + +GY ++ Sbjct: 179 -EEESPFDRVVDVYVKNLRKKLQ----LDCIITVKGVGYKLE 215 >gi|170078061|ref|YP_001734699.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169885730|gb|ACA99443.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 222 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 81/154 (52%), Gaps = 15/154 (9%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133 P+I ++ L + + G DD + KP +E+LARV A RL+ RA P+ + Sbjct: 75 PIIILTARDDLDDKVTGLNLGADDYLGKPFSFKELLARVQA---RLRTFTPRATPEPMCL 131 Query: 134 FSDGRDPEV------QGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + + ++ QG+V+ LP RE +LE L+ + + +++ Q+ ++G +D Sbjct: 132 KTQTLELDLKARRVRQGDVWLELPTREFILLETLLRHPDQVLSRQQLLDQVWG-YDYDPG 190 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+V+ +I LRK KLG D +++ R +GY + Sbjct: 191 SNIVDVYIGYLRK----KLGSDLIETVRGIGYRL 220 >gi|284031439|ref|YP_003381370.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283810732|gb|ADB32571.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 236 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 25/210 (11%) Query: 21 DDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGIS 79 D G ++E + E W +D AI L+ G E+ R +RA P++ ++ Sbjct: 22 DHGFTVELAHDGETGLW--KGREQDYDAIVLDLMLPGLSGDEVCRQLRAAGCWTPILILT 79 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR------- 132 + + G DD + KP ++ ++AR+ A+ RR T P R Sbjct: 80 ARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRR---------TAPARPVNLVVG 130 Query: 133 --VFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 V R +G L RRE +LEYLM N G +K +I ++G FD E N Sbjct: 131 DLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVWGADFDR--EPN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VVE ++ LR+K+ G + + R GY Sbjct: 189 VVEVYVGYLRRKIDQPFGTGSIRTVRGHGY 218 >gi|134294123|ref|YP_001117859.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134137280|gb|ABO58394.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 220 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 12/157 (7%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R +P I I+ + + DSG DD + KP E+LAR+ A+ RR RA+ Sbjct: 68 RRDETLPAIIITARDGVPDRIAGLDSGADDYLVKPFVLEELLARIRAVTRR---HAGRAQ 124 Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 T GP+R+ + + L +E +L LM + G +++ Q +Y + E Sbjct: 125 TTLAIGPLRLDPIKHLVWLNDDEVTLSPKEFVLLHELMRDPGAVISREQFEERLYS-WGE 183 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E N V+ HI LRK KLG D + + R +GY I Sbjct: 184 EIESNAVQVHIHNLRK----KLGHDMIRTVRGVGYRI 216 >gi|254228323|ref|ZP_04921750.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|262394388|ref|YP_003286242.1| DNA-binding response regulator [Vibrio sp. Ex25] gi|151939129|gb|EDN57960.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|262337982|gb|ACY51777.1| DNA-binding response regulator [Vibrio sp. Ex25] Length = 218 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 3/142 (2%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IR ++P++ ++ ++ + D G DD + KP E+LAR+ + RR Sbjct: 60 LEVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQ 119 Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + G + + + L R E +IL LM N G+ +K Q+ +++ Sbjct: 120 SGSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNAGRVQSKEQLQQSLH 179 Query: 179 GLFDEAVEENVVESHISKLRKK 200 G +DE +N +E HI LRKK Sbjct: 180 G-WDEGSSDNAIEVHIHNLRKK 200 >gi|311280342|ref|YP_003942573.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308749537|gb|ADO49289.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 223 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 9/220 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D +L+ G I +G +G + +++ + ++ L E L+ Sbjct: 4 LVVEDDSLLLQGLILAMQSEGYVCDGVTTAHEAALCLANSHYSLMVLDLGL--PDEDGLD 61 Query: 63 -LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120 L RI R +P++ ++ ++ ++ D+G DD + KP E+ ARV A+ RR Sbjct: 62 FLSRIRREKFSLPVLILTARDTVNDRIEGLDTGADDYLVKPFALEELNARVRALLRRHNN 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N G IR+ R ++ L +E +L LMA G V + +++ IY Sbjct: 122 QGDNEISVGNIRINVTRRQVWLEETQLELTPKEYALLSRLMAKAGSPVHREILYNDIYS- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D N +E HI LR+K+G + + R GY + Sbjct: 181 WDNEPSTNTLEVHI----HNLRDKIGKSRIRTVRGFGYML 216 >gi|297158650|gb|ADI08362.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 245 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 8/163 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ +VP++ ++ +++ + +G DD V KP E++AR+ + RR + Sbjct: 82 LGRVRNELPEVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSGAA 141 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R+E+ G + + D + G+ L E +L YLM N + ++K QI ++ Sbjct: 142 AARSESLLTVGDLVLDEDSHEVSRAGQEIHLTATEFELLRYLMRNPRRVLSKAQILDRVW 201 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +D + NVVE +IS LR+K+ G P + ++R GY I Sbjct: 202 S-YDFGGQANVVELYISYLRRKI--DAGRSPMIHTRRGAGYLI 241 >gi|296274651|ref|YP_003657282.1| winged helix family two component transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296098825|gb|ADG94775.1| two component transcriptional regulator, winged helix family [Arcobacter nitrofigilis DSM 7299] Length = 222 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 80/162 (49%), Gaps = 2/162 (1%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ + +RA P+I ++ S++ T+ D G +D + KP E+LAR+ R Sbjct: 60 IEVCKKLRAEKINTPIIMLTAKDSIEDTIKGLDIGANDYLPKPFSFSELLARIRVQLRAK 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + + + GE L +E +LEYL+ N+ K +++T + +++ Sbjct: 120 DSTQTTLKIADLELDLLAKTAKRAGEDITLTAKEFSLLEYLIKNQNKVLSET-VLASMLN 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE+ N+V +I +LR K+ + + R LG+ ID Sbjct: 179 NMDESNISNLVNVYIYRLRNKIDKPYEKKLIKTIRGLGFKID 220 >gi|240139159|ref|YP_002963634.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens AM1] gi|240009131|gb|ACS40357.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens AM1] Length = 220 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 6/147 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPI 131 P++ ++ ++ + D G DD + KP E+ AR+ A+ RR + E G I Sbjct: 73 TPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRRAAGRATASLEHGGI 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 R+ V G P+ RRE +L LM +K ++ +YG + E +E N VE Sbjct: 133 RLDLGSLTVTVDGAQIPVSRREFMVLAALMERPSVLRSKAELEDRLYG-WQEEIESNAVE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 H+ LR K+G +++ R LGY Sbjct: 192 VHV----HNLRAKIGKHAIETVRGLGY 214 >gi|207728005|ref|YP_002256399.1| response regulator protein [Ralstonia solanacearum MolK2] gi|207742406|ref|YP_002258798.1| response regulator protein [Ralstonia solanacearum IPO1609] gi|300705088|ref|YP_003746691.1| response regulator, chey family [Ralstonia solanacearum CFBP2957] gi|206591249|emb|CAQ56861.1| response regulator protein [Ralstonia solanacearum MolK2] gi|206593796|emb|CAQ60723.1| response regulator protein [Ralstonia solanacearum IPO1609] gi|299072752|emb|CBJ44105.1| putative response regulator, CheY family [Ralstonia solanacearum CFBP2957] Length = 232 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ + +P++ ++ S+ + D G DD + KP E+ ARV A+ RR Sbjct: 66 LKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGTGG 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 GP+ GR + +V L RE +LE L++ G+ V+K Q+ + G + Sbjct: 126 GATLVRHGPLAFDQVGRIAYIHDQVVDLSAREIGLLEILLSRAGRLVSKEQLVDHLCG-W 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E V N +E ++ +LRKK+ ++ + + R LGY ++ Sbjct: 185 GEEVSNNAIEVYVHRLRKKI--EVDGIRIATVRGLGYCLE 222 >gi|218294843|ref|ZP_03495697.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] gi|218244751|gb|EED11275.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] Length = 224 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 11/165 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR S VP++ ++ ++ + D+G DD + KP E+LARV A RR+ Sbjct: 63 IEVARRIRKTSNVPILILTAKDRIEDKVQGLDAGADDYLVKPFSIEELLARVRAHLRRV- 121 Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 A TG IRV +GR+ G L +E +LE L N GK + +I Sbjct: 122 ---TPAITGEIRVADLVINLEGREVFRAGRRIELSNKEFELLELLAKNPGKVFTRYEIEE 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + NVV+ +I LRKKL + + R +GY + Sbjct: 179 KVWPGYQGG--SNVVDVYIGYLRKKLEAGGERRLIHTVRGVGYVL 221 >gi|126731800|ref|ZP_01747604.1| two-component system regulatory protein [Sagittula stellata E-37] gi|126707627|gb|EBA06689.1| two-component system regulatory protein [Sagittula stellata E-37] Length = 223 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 17/227 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 VLI+D + G + D G +++ + E ++L+S D++ I+ L G Sbjct: 3 IVLIEDNDSLAKGVVNALSDQGHAVDWLSDGFEGSQFLKSEG-ADLAIIDVNL--PGLSG 59 Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 E+ R +R S VP+I ++ L + D+G DD + KP E+ AR+ A+ Sbjct: 60 FEIVRTLREQGSTVPVILLTARTDLDDRITGLDAGADDYLGKPFEMGELAARIRAL---- 115 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIF 174 + TG +++ D + + P LPRRE + E L+ + G+ V+K +I Sbjct: 116 ARRKSDLRTGVVKIGHMRFDRTARVLIGPAGPIDLPRRELALFECLLDHSGRIVSKDRIS 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +YG+ + VE N VE +S+LR+KL + + R LGY +D Sbjct: 176 DTLYGVGAD-VEANAVELLVSRLRRKLAETGA--TIRTARGLGYLLD 219 >gi|310642219|ref|YP_003946977.1| response regulators consisting of a chey-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] gi|309247169|gb|ADO56736.1| Response regulators consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] Length = 219 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 3/157 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKV 121 L R IR+ P++ ++ + G DD + KP E+ AR+ A + R + Sbjct: 62 LCREIRSKVDCPILFLTAKSMENDVMLGLGEGADDYIVKPFGAGELRARINAHLRRENRE 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N G + G++ VQ V P + E I ++L N G+ +K QI+ A++G F Sbjct: 122 RRNVFCIGEVHFNLSGKEITVQNVVIPFTKSEYEICKFLALNWGQVFSKEQIYEAVFG-F 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D + + HI +R KL K+ PV++ +GY Sbjct: 181 DGDSDSATIVEHIKNIRAKL-GKVEVSPVETVWGIGY 216 >gi|300786954|ref|YP_003767245.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796468|gb|ADJ46843.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 223 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/215 (24%), Positives = 104/215 (48%), Gaps = 12/215 (5%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQS----SAREDVSAIEAFLIGKGEKVLELPRIIR 68 +GY+A G + EG+ + E Q+ ++ E +AI ++ + R+ + Sbjct: 9 EGYMAKLLGRGFAEEGYATDIAESGSQALVTAASMEHDAAILDVMLPDVDGFELCARLRQ 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---R 125 + VP++ ++ S+ + D+G DD + KP E+ ARV A+ RR + + R Sbjct: 69 SGWHVPVLMLTARDSVSDRVKGLDAGADDYLCKPFSFVELCARVRALTRRAGIGRDVAVR 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G +R+ R L E +LE LM ++ + + +++I ++G + V Sbjct: 129 LQAGSLRLDPLSRRVWSGPSEVYLSATEFTLLELLMHHQDQVLTRSRILDQVWG-YRYPV 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVV+ ++ + LR+K+G D +++ R +GY + Sbjct: 188 TSNVVDQYV----RYLRHKVGQDLIETVRGVGYRL 218 >gi|296444493|ref|ZP_06886458.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296258140|gb|EFH05202.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 220 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 13/152 (8%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGP 130 P++ +S S + D+G DD + KP E++AR+ ++ RR S RA T Sbjct: 73 TPVLALSARGSWSERVQGIDAGADDYLPKPFRMEELMARLRSLIRR---STGRASSVTRN 129 Query: 131 IRVFSDGRDPEVQGEVFPLPRR--ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 RV D R +++ P+ E R++ YLM RG+ VA++++ IYG + + N Sbjct: 130 GRVSLDERSMQIKLGDAPVEMTAIEYRLIAYLMHRRGEVVAQSELAEHIYG--HDQQQSN 187 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E I ++RK K+G ++++R GY + Sbjct: 188 AIEVLIGRVRK----KIGAGFIETRRGFGYLV 215 >gi|226356929|ref|YP_002786669.1| response regulator OmpR [Deinococcus deserti VCD115] gi|226318919|gb|ACO46915.1| putative response regulator, OmpR [Deinococcus deserti VCD115] Length = 222 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 15/212 (7%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLELPRIIR 68 L + GY L DG++ G +SARE + +G + E+ R +R Sbjct: 22 LEQAGYRVLTAADGIT--GL----------TSAREHAPDLVVLDLGLPDFDGAEVARRLR 69 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 S VP+I ++ ++ ++ ++G DD + KP H E++ARV + R + Sbjct: 70 KTSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARV-KVQLRHQQHGEVISI 128 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + R G L +E +L +L G+ ++ +I ++ + N Sbjct: 129 GALEIHPQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWN-GELPSNSN 187 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 VV+ H++ +R KLR+ G+ + + R +GY++ Sbjct: 188 VVDVHMANMRAKLRDLDGYGIIRTVRGIGYAL 219 >gi|120405958|ref|YP_955787.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119958776|gb|ABM15781.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 233 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 15/190 (7%) Query: 23 GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPL 75 G+ L GF+ +++ E L+S+ + +A ++ VL+ ++ A + VP+ Sbjct: 26 GLRLSGFDVYTAVDGAEALRSATE---TRPDAIVLDINMPVLDGVSVVTALRAMDNDVPV 82 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPI 131 +S S+ + ++G DD + KP E++ARV A+ RR S+ GP+ Sbjct: 83 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATFSSETITVGPL 142 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V GR V G L +RE +L L ++ +++ Q+ ++G +D A + NVV+ Sbjct: 143 EVDIPGRRARVDGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWG-YDFAADTNVVD 201 Query: 192 SHISKLRKKL 201 I LR+KL Sbjct: 202 VFIGYLRRKL 211 >gi|299144115|ref|ZP_07037195.1| DNA-binding response regulator [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518600|gb|EFI42339.1| DNA-binding response regulator [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 234 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 28/220 (12%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L Y ++ DG +LE F S E + +V+ EA L IR Sbjct: 23 LKNSNYDVIYAFDGKDALEKFRSNEIHLVIMDLMMPNVTGEEAILK------------IR 70 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-----KVSN 123 S VP+I +S + + G DD + KP + E++ARV + RRL K N Sbjct: 71 EKSYVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELMARVNSNIRRLYKYQSKEEN 130 Query: 124 NR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 R E G I++ + + V GE L E +ILE LM N + + +I+ ++ + Sbjct: 131 ERYIEIGGIKLNTFEKTVFVDGEKVGLTSIEYKILELLMENPNRVFSIDEIYEKVWN--E 188 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 A+E V HI ++R+K+ +D K+ L + W Sbjct: 189 PAIEAKTVTVHIRRIREKIE-------IDPKKPLYLKVAW 221 >gi|228940293|ref|ZP_04102864.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973209|ref|ZP_04133798.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228786405|gb|EEM34395.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819419|gb|EEM65473.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 233 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121 IR +P+I +S + SG DD ++KP + E++ARV + RR K + Sbjct: 73 IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTSI 132 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N++ E G + V +D R V+G+ L +E ILE L N+G ++ +I+ A++ Sbjct: 133 EHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIYEAVWK 192 Query: 180 -LFDEAVEENVVESHISKLRKKL 201 +F ++ +N V HI+K+R K+ Sbjct: 193 EVFYKS--DNTVMVHITKIRDKI 213 >gi|224539015|ref|ZP_03679554.1| hypothetical protein BACCELL_03912 [Bacteroides cellulosilyticus DSM 14838] gi|224519343|gb|EEF88448.1| hypothetical protein BACCELL_03912 [Bacteroides cellulosilyticus DSM 14838] Length = 225 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 6/152 (3%) Query: 55 GKGEKVL-ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G G +L EL R+ R+ S ++ IS SL ++ + G DD + KP H E+ ARV Sbjct: 57 GSGLDLLRELKRLHRSDS---VLIISAKDSLDDKVEGLELGADDYLTKPFHLAELNARVK 113 Query: 114 AIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ RR + + + T G + ++ D R EV G L R+E +L Y + N + + K Sbjct: 114 SVIRRRQAKGDVSITMGNLLLYPDKRQVEVGGVPLQLNRKEFDLLYYFIVNPDRVINKMS 173 Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRN 203 + +++G D+ + + S + LR+KL+ Sbjct: 174 LAESVWGDNIDQVDSLDFIYSQVKNLRRKLKQ 205 >gi|199597665|ref|ZP_03211093.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258509808|ref|YP_003172559.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258540993|ref|YP_003175492.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|199591472|gb|EDY99550.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257149735|emb|CAR88708.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257152669|emb|CAR91641.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] Length = 237 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 13/212 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D I F D + + + EE L+ E I L+ L Sbjct: 5 ILVVDDEKPISD--IVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKIDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 63 EVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTSS 122 Query: 122 SN---------NRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +N NR E G + + D +GE L RE +L YL + G+ + + Sbjct: 123 ANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ + +LR+K+ + Sbjct: 183 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIED 213 >gi|126658291|ref|ZP_01729441.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|126620440|gb|EAZ91159.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] Length = 225 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 107/217 (49%), Gaps = 20/217 (9%) Query: 16 IALFGDDGVSLEGFNSLEFEEWLQ--SSARE---DVSAIEAFLIG-KGEKVLELPRIIRA 69 +A F + + EG+N + L ++ARE D+ ++ L G G ++ + R+ + Sbjct: 15 LAQFIELELKYEGYNITVVNDGLSGLTTARESNPDLILLDWMLPGISGLEICK--RLRQT 72 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 S+VP+I ++ + + D+G DD + KP + E+LARV A RR N+ E Sbjct: 73 GSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRR-----NKEENP 127 Query: 130 PIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + F D EVF L +E +LEYLM++ + +++ QI ++G +D Sbjct: 128 DLLQFLDLSLNRNTREVFRGNRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWG-YDF 186 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N++E ++ LR KL + + + R +GY + Sbjct: 187 MGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVL 223 >gi|71736926|ref|YP_274577.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557479|gb|AAZ36690.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. phaseolicola 1448A] gi|330890080|gb|EGH22741.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. mori str. 301020] Length = 227 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 3/167 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +++ R +R+ S VP++ I+ L D G DD + KP RE++ARV AI Sbjct: 63 GRDGMDICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR ++ G ++V G L E R+L + G+ ++ + Sbjct: 123 RRTSSTDPHTPKG-LQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +Y V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 182 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 227 >gi|319651162|ref|ZP_08005294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317397144|gb|EFV77850.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 224 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 4/148 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE E+ IR S VP+I +S + G DD + KP E++AR+ A+ Sbjct: 57 GEDGFEVCSRIRGKSNVPIIFLSAKGEEWDKVKALQLGGDDYIVKPFSPGELIARMNAVL 116 Query: 117 RR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR LK + + G I + R V G L +E +L + + ++ + +++ Q+ Sbjct: 117 RRTGGLKSDMDSIQIGKITIDKKARKVTVAGIQVTLTLKEYELLLFFIEHKNQALSREQL 176 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 I+G+ D V++HI LR KL Sbjct: 177 LEYIWGI-DYTGSLRTVDTHIKTLRMKL 203 >gi|294668444|ref|ZP_06733544.1| hypothetical protein NEIELOOT_00359 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309597|gb|EFE50840.1| hypothetical protein NEIELOOT_00359 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 232 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 8/165 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + +R P+I ++ + + G DD + KP RE++ARV A+ RR + Sbjct: 69 ELLKTLRPQHPQPVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRRTQT 128 Query: 122 S-NNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 AE+ P V+ D QG PL + E R+L L+ G+ ++ ++ +A+ Sbjct: 129 QPAAEAESAP--VWHDDAPAYCIRHQGRELPLTQGEYRLLRTLLHRPGRVFSREELLTAM 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 +G + + + + +HI LR KLR + + + + LGYS + Sbjct: 187 FG-GNRPSDPHTINTHIRALRHKLRAAGIADEHIRTHHGLGYSFN 230 >gi|171059157|ref|YP_001791506.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170776602|gb|ACB34741.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 241 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 5/170 (2%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L + +R S+VP+I ++ L ++G DD + KP RE++ARV Sbjct: 58 LMLPGRDGLSLCQELRRFSEVPVIMLTARVEEVDRLIGLEAGADDYICKPFSPREVVARV 117 Query: 113 AAIYRRLK-VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 A+ RR K V + A + P+ + + + G L E R+L+ L A G+ + Sbjct: 118 KAVLRRHKRVPTDLVAAPSSPLVIDEERHRALLDGHELDLTPVEFRLLKALAAAPGRVFS 177 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + Q+ ++ A+ + ++SH+ LR+KL G +P+ S +GY Sbjct: 178 RDQLLDKLHD-DTRALSDRTIDSHVKNLRRKLEQACPGLEPIRSIYGVGY 226 >gi|15836925|ref|NP_297613.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c] gi|9105147|gb|AAF83133.1|AE003885_4 two-component system, regulatory protein [Xylella fastidiosa 9a5c] Length = 231 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 69/131 (52%), Gaps = 2/131 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130 + P++ ++ +++ + + G DD ++KP RE AR + RR + S + G Sbjct: 72 RTPVLMLTARDAIEDRVYTLNVGADDYLSKPFDFREFEARCRVLLRRNRGSASEVVRIGS 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + GE LP RE R+LE L+A G+ V K +I ++++ FD+ N + Sbjct: 132 FEFDNAAHRIRLDGEPIKLPNREYRLLEILIARLGQIVGKDEIGNSLFN-FDDNAGPNAI 190 Query: 191 ESHISKLRKKL 201 E ++++LR+KL Sbjct: 191 ELYVARLRRKL 201 >gi|330988874|gb|EGH86977.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. lachrymans str. M301315] Length = 227 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 3/167 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +++ R +R+ S VP++ I+ L D G DD + KP RE++ARV AI Sbjct: 63 GRDGMDICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR ++ G ++V G L E R+L + G+ ++ + Sbjct: 123 RRTSSTDPHTPKG-LQVDEAQYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +Y V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 182 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 227 >gi|314986976|gb|EFT31068.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL005PA2] Length = 227 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 20/155 (12%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G KV+E +R S P++ IS ++ D+G DD V KP E+LAR+ + Sbjct: 59 GVKVIE---AVRGWSSAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLT 115 Query: 117 RRLKVSNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGK 166 RR + + + PI F RD G L E R+LE L+ N G+ Sbjct: 116 RR--IGQDEVDEEPIVAFGSVWVDLAAHTVARD----GANVRLTPTEWRVLELLIRNEGR 169 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 V + + S ++G + + + +IS+LRKKL Sbjct: 170 LVTRQTMLSQVWG-SEHVTDTGYLRLYISQLRKKL 203 >gi|296139723|ref|YP_003646966.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296027857|gb|ADG78627.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 228 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 26/213 (12%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIGI 78 + L L S R+ A EAF + + ++ +L R +R S VP+I + Sbjct: 22 DHLRLAGCLVSQHRDGARAWEAFQADRPDLLVLDRMLPGLSGDDLCRRVREVSTVPIIML 81 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSD 136 + L+ +D +SG DD + KP RE+ RV A RR S + + GP R+ + Sbjct: 82 TALDGLENRIDGLESGADDYLAKPFSLRELQLRVNAQLRRNTPSEVDLVIDAGPFRIDAA 141 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHIS 195 R + L RE ++ YL+ N G+ V++ +I ++ F +A + V H+ Sbjct: 142 HRRVWIGDREITLTTREYELMLYLVRNPGRVVSRDEILREVWRWGFGDA---STVTVHVR 198 Query: 196 KLRKKLRNKLGFDP-----VDSKRFLGYSIDWN 223 +LR+K+ + DP + ++ GY W Sbjct: 199 RLREKIES----DPRNPVYLQTEWGAGYRFGWG 227 >gi|289664195|ref|ZP_06485776.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668785|ref|ZP_06489860.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|325918854|ref|ZP_08180934.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas vesicatoria ATCC 35937] gi|325534945|gb|EGD06861.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas vesicatoria ATCC 35937] Length = 229 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 14/182 (7%) Query: 33 EFEEWLQSSAREDVSAI-----EAFLIG---KGEKVLELPRIIRAHS---QVPLIGISDY 81 EFE ARE +AI + L+ G L+L R R ++P+I ++ Sbjct: 26 EFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLDLARRWRKEQLTREIPIIMLTAR 85 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE 141 + ++GVDD V KP RE+LAR+ A+ RR + + R+ DG Sbjct: 86 GEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTREDDEDGSVAVGRLRIDGAAHR 145 Query: 142 VQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 V P+P E R+L + M + + +TQ+ ++G VEE ++ HI +LRK Sbjct: 146 VFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVWG-GSVYVEERTIDVHIRRLRK 204 Query: 200 KL 201 L Sbjct: 205 TL 206 >gi|257453592|ref|ZP_05618882.1| phosphate regulon transcriptional regulatory protein PhoB [Enhydrobacter aerosaccus SK60] gi|257449050|gb|EEV24003.1| phosphate regulon transcriptional regulatory protein PhoB [Enhydrobacter aerosaccus SK60] Length = 232 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 101/209 (48%), Gaps = 20/209 (9%) Query: 24 VSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPL 75 + + GF+ L+ E Q+ R ++ ++ +++ G ++L R ++ S++P+ Sbjct: 23 LEMAGFDCLQASEVSQAHHLVVDHRPNLILLD-WMLPNGLSGIDLCRRLKKDEMLSEIPI 81 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS 135 I ++ + D+G DD + KP RE+++R+ A+ RR S+ + PI V Sbjct: 82 IMLTAKGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRR---SSALSGEKPIDVGG 138 Query: 136 DGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 DP Q + + E R+L + M++ + +TQ+ ++G + VE+ + Sbjct: 139 LSLDPASQRVSANNKAVDIGPTEYRLLAFFMSHPERAYTRTQLLDQVWG-GNVYVEDRTI 197 Query: 191 ESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 + HI +LRK L GF D + + R GY Sbjct: 198 DVHIRRLRKVL-EPFGFADYIQTVRGTGY 225 >gi|229046887|ref|ZP_04192519.1| Two-component response regulator [Bacillus cereus AH676] gi|229113338|ref|ZP_04242797.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228670102|gb|EEL25486.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228724432|gb|EEL75757.1| Two-component response regulator [Bacillus cereus AH676] Length = 233 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121 IR +P+I +S + SG DD ++KP + E++ARV + RR K + Sbjct: 73 IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTSI 132 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N++ E G + V +D R V+G+ L +E ILE L N+G ++ +I+ A++ Sbjct: 133 EHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIYEAVWK 192 Query: 180 -LFDEAVEENVVESHISKLRKKL 201 +F ++ +N V HI+K+R K+ Sbjct: 193 EVFYKS--DNTVMVHITKIRDKI 213 >gi|229073625|ref|ZP_04206740.1| Two-component response regulator [Bacillus cereus F65185] gi|229182223|ref|ZP_04309505.1| Two-component response regulator [Bacillus cereus 172560W] gi|228601238|gb|EEK58777.1| Two-component response regulator [Bacillus cereus 172560W] gi|228709480|gb|EEL61539.1| Two-component response regulator [Bacillus cereus F65185] Length = 342 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121 IR +P+I +S + SG DD ++KP + E++ARV + RR K + Sbjct: 182 IREDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNSSI 241 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY- 178 +N++ E G + V +D R V+G+ L +E ILE L N+G ++ +I+ A++ Sbjct: 242 GHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVMSVAKIYEAVWE 301 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 +F ++ +N V HI+K+R K+ Sbjct: 302 EVFYKS--DNTVMVHITKIRDKI 322 >gi|224584566|ref|YP_002638364.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469093|gb|ACN46923.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 224 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 6/163 (3%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ + +R Q +P++ ++ ++ + + G DD + KP E+ AR+ A+ RR Sbjct: 60 LEVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +F D +QG+ L RE+ +L LM R + V++ Q+F ++ Sbjct: 120 AGQVHEVQQLGELIFHDEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 L DE E+ +E +I +LRKKL+ G D + + R LGY ++ Sbjct: 180 LNDEVSPES-IELYIHRLRKKLQ---GSDVRITTLRGLGYVLE 218 >gi|121535983|ref|ZP_01667776.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121305443|gb|EAX46392.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 231 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 18/152 (11%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR +S VP+I ++ + + G DD V KP + +E++ARV AI RR Sbjct: 63 FEVCQQIRKYSPVPIIMLTSRTQDDDRIMGLEIGADDYVTKPFNPKEVVARVKAILRRTA 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQ-----------GEVFPLPRRERRILEYLMANRGKRVA 169 + +R PE++ G+ L +ER +L L ++ GK ++ Sbjct: 123 APQQYTQADILRF------PELEINMAEHTVIAFGKPVALANKEREVLWQLASHAGKVLS 176 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ ++ + + V++H+ +LRKKL Sbjct: 177 REQLLELVWD-YSYCGDTRTVDTHVKRLRKKL 207 >gi|91203082|emb|CAJ72721.1| strongly similar to response regulator protein phoB [Candidatus Kuenenia stuttgartiensis] Length = 230 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 14/198 (7%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68 L KDGY + +L+G +LE L S R + ++ L G G +V + + Sbjct: 22 LEKDGYKTI-----TALDGEAALE----LSKSERPALIILDIMLPGMNGLEVCKRLKSDE 72 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126 A S +I ++ G DD V KP +E++ARV ++ RR K ++ + Sbjct: 73 ALSDAAIIMLTARGEEDDITRGLKLGADDYVTKPFSPKELVARVHSVLRRTKNASFKKEL 132 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E G +++ D + ++ +V PL E ++L L G+ + Q+ AI G+ + + Sbjct: 133 LEIGDLKINMDNYEVKIGHDVIPLTLTEFKLLCQLAGKPGRVFTRDQLIDAIAGV-ETII 191 Query: 186 EENVVESHISKLRKKLRN 203 + ++ HI+ LRKKL++ Sbjct: 192 IDRTIDVHIASLRKKLKS 209 >gi|302188250|ref|ZP_07264923.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae 642] gi|330944499|gb|EGH46487.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330953676|gb|EGH53936.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae Cit 7] Length = 220 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 13/166 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+L R +RA + +P++ ++ + D+G DD + KP E+ ARV A+ RR Sbjct: 60 LDLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR- 118 Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S RA E I + + QG P+ E ++L LM GK V + ++ + Sbjct: 119 --SQGRAQPLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +YG + + VE N +E I LRKKL +L + + R +GY ++ Sbjct: 177 TLYG-WQDKVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217 >gi|299137241|ref|ZP_07030423.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298600646|gb|EFI56802.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 228 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 3/158 (1%) Query: 65 RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VS 122 R +RA P++ ++ + ++ ++G DD + KP E+LARV A+ RR K V+ Sbjct: 65 RQVRARGDSTPILVLTARSEREKVVELLNAGADDYLTKPFDLGELLARVKALIRRGKGVA 124 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + G +RV + + + L E RI EYL+ V+K ++ +Y Sbjct: 125 HPLITFGRLRVNTIEQTVRCADLLVDLSPTEYRIFEYLIFRPRAIVSKRELLEHLYDYRW 184 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E NV+E+H+S LRKKLR V++ R GY + Sbjct: 185 EH-HSNVIEAHVSNLRKKLRAMGEEATVETIRGRGYRL 221 >gi|289549067|ref|YP_003474055.1| transcriptional regulator [Thermocrinis albus DSM 14484] gi|289182684|gb|ADC89928.1| two component transcriptional regulator, winged helix family [Thermocrinis albus DSM 14484] Length = 226 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 103/207 (49%), Gaps = 11/207 (5%) Query: 18 LFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIRAHSQVPL 75 LFG G S + N + +E L S DV ++ L +GE++L + R VP Sbjct: 19 LFGIKGWSTKVARNLYQAKEILSSFEIFDVCVLDLQLGRDRGEELLPILR----EKGVPT 74 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRV 133 + ++ ++T ++ + G +D + KP E++AR+ + RRLK S+ G ++V Sbjct: 75 LILTVEDDVRTKVECLEKGAEDYLVKPFEPEELIARIGVLVRRLKRSSPSLTLSFGDLKV 134 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 + V+G+ LPR++ IL LM N K V + S + + EA + + +H Sbjct: 135 DMKSMELTVKGQKVRLPRKQLLILIKLMENAEKPVTYQSLMSYAWDI-TEAPDMFSLRTH 193 Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +RK L+ ++G D V S R +GY + Sbjct: 194 VHNIRKILK-EVGLDIV-SYRGIGYML 218 >gi|255523050|ref|ZP_05390022.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255513165|gb|EET89433.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 230 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 22/156 (14%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S P+I +S +D G DD + KP + E++ARV A+ RR + Sbjct: 62 EVLRKIREKSSTPIIFLSAKGEDIDKIDGLFLGADDYLAKPFNTLELIARVKALLRRSTI 121 Query: 122 SNNRAETGPI--------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 NN E + +V+ D D E+Q L E +++ + M NR K Sbjct: 122 FNNTKEESNLTIINKHLKLDEESCKVYKD--DVEIQ-----LTSFEYKLICFFMKNRNKV 174 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 K Q++ ++G +E ++ +ISKLR+K+ + Sbjct: 175 FTKGQLYEEVWGQCYLG-DEKIIMVYISKLREKIED 209 >gi|253996694|ref|YP_003048758.1| winged helix family two component transcriptional regulator [Methylotenera mobilis JLW8] gi|253983373|gb|ACT48231.1| two component transcriptional regulator, winged helix family [Methylotenera mobilis JLW8] Length = 235 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 16/166 (9%) Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +IR SQ+P+I ++ + G DD V KP RE+ AR+ AI RR K + Sbjct: 66 LIRKSSQIPVIMLTARGDESDRFFGLELGADDYVPKPCTPRELTARIRAILRRAKPTQES 125 Query: 126 AET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +T G + ++ + R E+ G L E +LE L N G V+K ++ G Sbjct: 126 LQTESQLTVGDLTIWPEQRRVELDGNTINLTSTEFNLLEVLAKNAGHVVSKKELAKLGMG 185 Query: 180 L----FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 FD + ++ H+S +R+K+ K G D + + +GY + Sbjct: 186 KPLARFDRS-----IDVHMSSIRQKIGTLKDGRDCIQTVYRMGYQL 226 >gi|228911305|ref|ZP_04075109.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] gi|228848323|gb|EEM93173.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] Length = 234 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 20/217 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ + DG +E ++ + E + ++ G+ LE+ R IR Sbjct: 22 LEKEGFEIVMAHDG-----------DEAIEKANEEQPDMVLLDIMLPGKDGLEVCREIRK 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVS 122 S++P+I ++ S + + G DD V KP RE+LARV A RR K Sbjct: 71 SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGSAEKDE 130 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N GPI + + + E L RE +L YL + G+ + + + ++G +D Sbjct: 131 NTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLLQTVWG-YD 189 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 + V+ + +LR+K+ + + ++R +GY Sbjct: 190 YFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGY 226 >gi|330990141|ref|ZP_08314120.1| Transcriptional regulatory protein qseB [Gluconacetobacter sp. SXCC-1] gi|329762749|gb|EGG79214.1| Transcriptional regulatory protein qseB [Gluconacetobacter sp. SXCC-1] Length = 223 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 95/202 (47%), Gaps = 10/202 (4%) Query: 22 DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIRAHSQVPLIGISD 80 DG +++ F +LE ++ D ++ L G G +L R R S + ++ + Sbjct: 23 DGHAVDWFTTLEDARAAMATVDYDFMLLDLGLPDGSGRDLLRDIR--RTSSNIAILITTA 80 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGR 138 + + G DD + KP E++AR++A+ RR R G I + + R Sbjct: 81 EDQISDRIAGLSDGADDYIVKPYDLNELVARISAVARRYAAPRRRVCYRIGEIAIDRENR 140 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 G L RE I+E L + G+ ++ QI +A+Y L D+ V+ N VE IS+LR Sbjct: 141 SVSCDGRALDLTAREWAIMELLSRSPGRIYSRQQIDTALYAL-DQDVDSNTVEVFISRLR 199 Query: 199 KKLRNKLGFDPVDSKRFLGYSI 220 KK+ NK+ + + R GY + Sbjct: 200 KKVGNKI----IRTVRGRGYCL 217 >gi|329734479|gb|EGG70791.1| response regulator receiver domain protein [Staphylococcus epidermidis VCU028] Length = 221 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 5/151 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAE 127 S +P+I ++ +L T L F G D + KP + E++ R+ + + +S N + Sbjct: 69 SNIPIIFLTAKDNLDTRLKCFSLGAKDYLPKPFYMEELIIRIKNVLNQSHSQSLSPNIKK 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 T + ++ D +V + ++E I++ L N +K QI+ +I ++ Sbjct: 129 TKELIIYYDTYRIDVNNMTIDITKKEFEIIKLLSLNPQYYFSKEQIYDSIN--LNKTGNT 186 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VV HI K+RKKL F+ +D+K +GY Sbjct: 187 QVVAEHIRKIRKKLSCYSRFEYIDTKWGVGY 217 >gi|262368892|ref|ZP_06062221.1| transcriptional regulator [Acinetobacter johnsonii SH046] gi|262316570|gb|EEY97608.1| transcriptional regulator [Acinetobacter johnsonii SH046] Length = 226 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 10/163 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L I + +P++ IS LQ +D + G DD + KP E+LAR+ A+ RR Sbjct: 64 LKNIRSLYPTLPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRRSGAL 123 Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++ + + D + +G+ L RE IL L+++ K +KT + + Sbjct: 124 KQQKQSQTLSYAGLELDEDLHLAKYKGQTIDLSNREWAILIPLVSHPNKIFSKTNLEEKL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Y L D + N +E +I LR KLG D + + R LGY + Sbjct: 184 YDL-DSEINSNTIEVYIHHLRA----KLGKDFIRTIRGLGYRL 221 >gi|121598313|ref|YP_991950.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|134279900|ref|ZP_01766612.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|217419846|ref|ZP_03451352.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|238562735|ref|ZP_00439964.2| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|242314238|ref|ZP_04813254.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|251767807|ref|ZP_04820262.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|121227123|gb|ABM49641.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|134249100|gb|EBA49182.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|217397150|gb|EEC37166.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|238522054|gb|EEP85501.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|242137477|gb|EES23879.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|243061672|gb|EES43858.1| DNA-binding response regulator [Burkholderia mallei PRL-20] Length = 283 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 123 IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR- 181 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + R+E+ G + + + G L RE +LE L+A G ++K+Q+ Sbjct: 182 --QSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 239 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 240 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 279 >gi|78049624|ref|YP_365799.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927313|ref|ZP_08188567.1| two component transcriptional regulator, winged helix family [Xanthomonas perforans 91-118] gi|78038054|emb|CAJ25799.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542314|gb|EGD13802.1| two component transcriptional regulator, winged helix family [Xanthomonas perforans 91-118] Length = 221 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 9/154 (5%) Query: 57 GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 GE L + R +R+H P+I ++ L + D+G DD + KP E++AR+ A+ Sbjct: 56 GESGLSVIRFMRSHYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAV 115 Query: 116 YRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR S R G + + R G+ L E R+L LM G+ V K Sbjct: 116 TRR---SQGRVVPLLSHGDVCMDPGSRKVTKDGKWVALSAHEYRLLLALMERAGRVVTKD 172 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 Q+ +YG E N++ ++ +LR+KL + L Sbjct: 173 QLEEGVYGGPSEG-GSNMIAVYVHQLRRKLGDAL 205 >gi|84501127|ref|ZP_00999362.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanicola batsensis HTCC2597] gi|84391194|gb|EAQ03612.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanicola batsensis HTCC2597] Length = 228 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 6/165 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R ++ ++ VP+I +S + ++G DD V KP E++ARV A R Sbjct: 64 IEVCRQLKMRTETRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRAQLR 123 Query: 118 RLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + S R E I + S+ +G+V L E R+L M G+ ++ Q+ Sbjct: 124 RTRPSTVGERLEYEGIVLDSETHRVTREGQVLKLGPTEFRLLTTFMEKPGRVWSREQLLD 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V+ V+ HI +LRK L G DP+ + R GY++ Sbjct: 184 RVWG-RDIYVDTRTVDVHIGRLRKALCQFGGDDPLRTVRGAGYAL 227 >gi|146295565|ref|YP_001179336.1| two component transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409141|gb|ABP66145.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 223 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 83/159 (52%), Gaps = 6/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSN- 123 IR S+VP++ IS + + G DD + KP + A+V A+ RR VSN Sbjct: 67 IRKISKVPIMFISSASDNMNIIMAINMGGDDFIEKPFDLNVLTAKVHALIRRTYSFVSNI 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N E + + + Q + L + E +IL+ LM N G+ V++ +I ++ D Sbjct: 127 NLIEHKGVILNLNNTTLIHQNKKIELTKNEYKILQLLMENAGRVVSREEIMQHLWQ-SDS 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 +++N + +I++LRKKL +LG + + +K+ +GY I+ Sbjct: 186 FIDDNTLTVNITRLRKKLA-ELGLENFIKTKKGIGYIIE 223 >gi|329297433|ref|ZP_08254769.1| transcriptional regulatory protein TctD [Plautia stali symbiont] Length = 220 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 18/165 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ R VP++ ++ +LQ + ++G DD + KP E+ AR+ A+ RR + Sbjct: 63 LARLRRRGQHVPVLLLTAQSALQQRVQGLNAGADDYLTKPF---ELEARLRALLRRSQGQ 119 Query: 123 NNRAET-GPIRVFSDGRDPE----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++ G + RD E + + PL RE +L LM G+ V++ ++ Sbjct: 120 ATQTQSLGQLE-----RDAEGYFLLNHKPLPLTPREASVLSTLMQRPGRPVSRQHLYEQT 174 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 + L DEA E+ +E ++ ++RKKL G D + + R LGYS++ Sbjct: 175 FTLADEASPES-IELYVHRVRKKLA---GSDVAIVTLRGLGYSLE 215 >gi|326332848|ref|ZP_08199106.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium Broad-1] gi|325949406|gb|EGD41488.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium Broad-1] Length = 229 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 12/168 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R I+A VP++ ++ L G DD + KP RE++ARV A+ RR++ Sbjct: 64 LEVCRRIQAVRPVPVLMLTARVDEADVLVGLGVGADDYLTKPFRARELVARVNALLRRVE 123 Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 AE G +R+ R V G L E +L L A+ G V + ++ Sbjct: 124 RAAELAGAPRRTAEIGGLRMDPAARRVWVDGSEVRLTPTEFDLLVCLAADPGAVVTRERL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++G +++A V+SH+ K LR K+G V + +GY+++ Sbjct: 184 LAEVWG-WNDASGTRTVDSHV----KGLRAKIGSARVRTVHGVGYALE 226 >gi|229551249|ref|ZP_04439974.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229315412|gb|EEN81385.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|259651071|dbj|BAI43233.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 238 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 13/212 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D I F D + + + EE L+ E I L+ L Sbjct: 6 ILVVDDEKPISD--IVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKIDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 64 EVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTSS 123 Query: 122 SN---------NRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +N NR E G + + D +GE L RE +L YL + G+ + + Sbjct: 124 ANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ + +LR+K+ + Sbjct: 184 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIED 214 >gi|226310980|ref|YP_002770874.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093928|dbj|BAH42370.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 231 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 75/139 (53%), Gaps = 14/139 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV---FSDGRDPEVQGEVFP-- 148 G DD + KP RE++ARV AI RR + + A TG V F D R + EVF Sbjct: 95 GADDYLTKPFSPREVIARVKAILRRFQ-NTPEATTGHQEVLLQFGDIRIYPEKYEVFCKD 153 Query: 149 ----LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 L +E +L YL +++G+ + + Q+ +A++ +D + +V+ H+S LR+KL + Sbjct: 154 VKVELTPKEFELLNYLASHQGRVLTRDQLLNAVWN-YDFIGDSRIVDVHVSHLREKLEDD 212 Query: 205 LGFDP--VDSKRFLGYSID 221 +P + + R LGY ++ Sbjct: 213 TK-NPKYIKTVRGLGYKLE 230 >gi|188993478|ref|YP_001905488.1| Two-component system regulatory protein [Xanthomonas campestris pv. campestris str. B100] gi|167735238|emb|CAP53450.1| Two-component system regulatory protein [Xanthomonas campestris pv. campestris] Length = 221 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 9/153 (5%) Query: 57 GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ L + R +R H P+I ++ L + D+G DD + KP E++ARV AI Sbjct: 56 GDSGLTVIRYMRGHYDPTPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARVRAI 115 Query: 116 YRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR S+ R G + V R G+ L E R+L LM G+ V K Sbjct: 116 ARR---SHGRVVPLLTQGEVSVDPSSRKVTRNGKWVALSAHEYRLLLALMERAGRVVTKD 172 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 Q+ +YG E N++ ++ +LR+KL ++ Sbjct: 173 QLEEGVYGGPSEG-GSNMIAVYVHQLRRKLGDE 204 >gi|164688358|ref|ZP_02212386.1| hypothetical protein CLOBAR_02003 [Clostridium bartlettii DSM 16795] gi|164602771|gb|EDQ96236.1| hypothetical protein CLOBAR_02003 [Clostridium bartlettii DSM 16795] Length = 222 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 3/141 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + ++IR S VP+I ++ S + FD DD + KP + ++ R+ A+ RR K Sbjct: 64 MCKMIRKESDVPIIFVTALSSESDQIKGFDLLCDDYIVKPFSYNLLIKRIEAVLRRSKED 123 Query: 123 NNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 I++ E+ G++ L +E IL+ L+ N + V + ++ +I+G Sbjct: 124 KAGVYLTFEKIKLNLKTYSAEIDGKIIDLTLKEFNILKSLIENYPQVVTREKLLDSIWG- 182 Query: 181 FDEAVEENVVESHISKLRKKL 201 +D + +V++HI +RKK+ Sbjct: 183 YDYFGDTRIVDAHIKNIRKKI 203 >gi|110832893|ref|YP_691751.1| transcriptional regulator QseB [Alcanivorax borkumensis SK2] gi|110646004|emb|CAL15480.1| transcriptional regulatory protein qseb [Alcanivorax borkumensis SK2] Length = 220 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 63/234 (26%), Positives = 107/234 (45%), Gaps = 35/234 (14%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSA-----IEAFLIGK 56 +LI+D AL+ DG A G ++ F + AR+ ++A +A ++ Sbjct: 3 ILLIEDDALLGDGIQA----------GLQAMGFTVAWVTLARDGLAAWKSVDFDALVLDL 52 Query: 57 G----EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 G E L + A VP++ ++ ++Q +D G DD + KP E+ AR+ Sbjct: 53 GLPDQEGSEALCQWREAGLTVPVLILTARDAVQDRIDGLQRGADDYLIKPFDLGELAARL 112 Query: 113 AAIYRRLK------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 A+ RR + + + R P R D EV+ L RRE +L L+ ++G+ Sbjct: 113 QALLRRTRGQARPFIEHGRLRVDPFRQQVWLADKEVE-----LQRREMALLLALLQSQGR 167 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + Q+ +YG D VE N + HI LR+KL +++ V++ R GY + Sbjct: 168 LLTADQLADRVYGWMD-GVESNALTVHIHNLRRKLDSRI----VETVRGGGYRL 216 >gi|21232781|ref|NP_638698.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767145|ref|YP_241907.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|21114601|gb|AAM42622.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572477|gb|AAY47887.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] Length = 233 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ ++ ++ + D G DD + KP RE AR + RR + + Sbjct: 73 TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNRGQASEVVQLGAF 132 Query: 133 VFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 VF + + G LP RE R+LE L+ G+ V K +I + ++G FD+ N +E Sbjct: 133 VFDNAAHTVSLDGVAIELPNREYRLLEILIGRLGQVVGKDEIGNGLFG-FDDDAGPNAIE 191 Query: 192 SHISKLRKKL 201 ++ +LR+KL Sbjct: 192 LYVGRLRRKL 201 >gi|89076752|ref|ZP_01163030.1| putative transcriptional regulatory protein PhoP [Photobacterium sp. SKA34] gi|89047591|gb|EAR53203.1| putative transcriptional regulatory protein PhoP [Photobacterium sp. SKA34] Length = 224 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 3/153 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130 ++P++ ++ + Q + ++G DD + KP E++AR++A+ RR G Sbjct: 72 RLPILILTARSNWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSAGFVKPEMTAGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 IRV + V + L E +LEYLM + + V+K ++ +Y D+ + N + Sbjct: 132 IRVDLLAKQVYVHEILLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE--DQEGDPNTI 189 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E IS+LRKK +P+ + R GY + N Sbjct: 190 EVMISRLRKKFTKTGQENPISTIRGQGYIFELN 222 >gi|329577270|gb|EGG58733.1| response regulator receiver domain protein [Enterococcus faecalis TX1467] Length = 229 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 10/169 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R SQ+P+I ++ + + +G DD V +P + E++ARV +I RR + Sbjct: 61 MEVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTEPFNPLEVMARVKSILRRSQ 120 Query: 121 VSNNRA-----ETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173 + + E GP+ + D + + ++G+ L E IL YL+A+ RV + +I Sbjct: 121 MQLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGIL-YLLASHPNRVFSADEI 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221 F ++ + V V H+S LR K+ G + V + +GY ID Sbjct: 180 FERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227 >gi|308270767|emb|CBX27377.1| Response regulator mprA [uncultured Desulfobacterium sp.] Length = 234 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 10/164 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L I ++ + P++ ++ ++ + D G DD + KP E++ARV A++RR S Sbjct: 72 LQEIRKSGIKTPVLMLTAKGDVEDKIKGLDLGADDYLPKPFSSDELMARVRALFRR---S 128 Query: 123 NNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E+ ++VF + RD G+ L RE ILE+L+ N+ + V++ + + Sbjct: 129 GGQTES-VLQVFDLKLDTVTRDVTKDGKPVELTPREFSILEFLLYNKNRVVSRFSLAEHV 187 Query: 178 YG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G FD N ++ HI LR K+ N + + R +GY I Sbjct: 188 WGDAFDPFSMSNFMDVHIKNLRHKIENFDNNRIIQTIRGVGYII 231 >gi|303256488|ref|ZP_07342502.1| DNA-binding response regulator PhoB [Burkholderiales bacterium 1_1_47] gi|330999059|ref|ZP_08322783.1| putative phosphate regulon transcriptional regulatory protein PhoB [Parasutterella excrementihominis YIT 11859] gi|302859979|gb|EFL83056.1| DNA-binding response regulator PhoB [Burkholderiales bacterium 1_1_47] gi|329575646|gb|EGG57177.1| putative phosphate regulon transcriptional regulatory protein PhoB [Parasutterella excrementihominis YIT 11859] Length = 231 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 81/157 (51%), Gaps = 5/157 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R ++ +P+I ++ + ++G DD V KP RE++AR+ A+ RR K + Sbjct: 70 RSYHSNESLPVIMLTARGQEDDRVRGLEAGADDYVTKPFSPRELVARIRAVIRR-KGGDA 128 Query: 125 RAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +T GP+ + ++ + V G+ L E + L+ + G+ ++ Q+ ++G+ Sbjct: 129 LPDTLRVGPLEIDAERYEARVNGKPLRLSAVEFKFLQVFAKHPGRVYSRAQLIDKVWGVG 188 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + ++E V+ H+ +LRK+L D +++ R +GY Sbjct: 189 AD-IDERTVDVHMLRLRKQLAGTAAADFIETVRGVGY 224 >gi|261253108|ref|ZP_05945681.1| two-component system response regulator QseB [Vibrio orientalis CIP 102891] gi|260936499|gb|EEX92488.1| two-component system response regulator QseB [Vibrio orientalis CIP 102891] Length = 219 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 100/217 (46%), Gaps = 22/217 (10%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K G++ DG+ + EEW DV ++ L K + + L I Sbjct: 19 TLEKTGWVPELSQDGI--DALYRATSEEW-------DVIVLDLGL-PKLDGLTVLKGIRD 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 + P++ +S +L ++ ++G DD + KP E+ AR+ A RR S N + Sbjct: 69 ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELTARIRAQLRR--ASGNASPV 126 Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 I S D R +V QG+ L E +++ Y M N K +++T++ IY FD Sbjct: 127 MQIGNLSLDTRTSKVMWQGQAISLTALEYKVVAYFMHNPEKVISRTELVEHIYKQDFDR- 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + N +E I ++RKK+ K+ + + R LGY ++ Sbjct: 186 -DSNTIEVFIGRIRKKIAPKV----IKTVRGLGYQLN 217 >gi|229170549|ref|ZP_04298197.1| Two-component response regulator [Bacillus cereus AH621] gi|228612898|gb|EEK70075.1| Two-component response regulator [Bacillus cereus AH621] Length = 228 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121 IR +P+I +S + SG DD + KP + E++ARV + RR K + Sbjct: 68 IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKKYNTSI 127 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++N++ E G + V +D R V+G+ L +E ILE L N+G ++ +I+ A++ Sbjct: 128 NHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLARNKGIVLSVAKIYEAVWK 187 Query: 180 -LFDEAVEENVVESHISKLRKKL 201 +F ++ +N V HI+K+R K+ Sbjct: 188 EVFYKS--DNTVMVHITKIRDKI 208 >gi|255655551|ref|ZP_05400960.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296451542|ref|ZP_06893277.1| response regulator [Clostridium difficile NAP08] gi|296880109|ref|ZP_06904076.1| response regulator [Clostridium difficile NAP07] gi|296259607|gb|EFH06467.1| response regulator [Clostridium difficile NAP08] gi|296428834|gb|EFH14714.1| response regulator [Clostridium difficile NAP07] Length = 224 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 7/160 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124 IR S+VP+I IS S + + G DD + KP ++A+V A+ RR V NN Sbjct: 67 IRKISKVPIIFISSRNSNMDVIMGVNLGADDYIQKPFSIDVLVAKVNALLRRTYNFVDNN 126 Query: 125 RAETGPIRVFSDGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + V D + E L + E +IL LM +G+ V++ ++ ++ D Sbjct: 127 SNQIIHNGVTLDLSTATINYEDNTIELTKNEIKILHELMKYKGQIVSRNKLMKKLWD-ND 185 Query: 183 EAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 V++N + +++++R KL N++G D +++KR LGY I+ Sbjct: 186 WFVDDNTLTVNVNRIRSKL-NEIGLEDFIETKRGLGYIIN 224 >gi|115359104|ref|YP_776242.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|170701807|ref|ZP_02892740.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|171317681|ref|ZP_02906865.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|172063886|ref|YP_001811537.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115284392|gb|ABI89908.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] gi|170133286|gb|EDT01681.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|171097156|gb|EDT42007.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171996403|gb|ACB67321.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 220 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 77/162 (47%), Gaps = 12/162 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + R +P I I+ + + DSG DD + KP E+LAR+ A+ RR Sbjct: 63 LASLRRRDETLPAIIITARDGVPDRIAGLDSGADDYLVKPFVLEELLARIRAVNRR---H 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 RA+T GP+R+ + + L +E +L LM + G +++ Q +Y Sbjct: 120 AGRAQTTLAIGPLRLDPVKHLVWLNDDEVTLSPKEFVLLHELMRDPGAVISREQFEERLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E +E N V+ HI LRK KLG D + + R +GY I Sbjct: 180 S-WGEEIESNAVQVHIHNLRK----KLGHDMIRTVRGVGYRI 216 >gi|325840156|ref|ZP_08166964.1| response regulator receiver domain protein [Turicibacter sp. HGF1] gi|325490395|gb|EGC92718.1| response regulator receiver domain protein [Turicibacter sp. HGF1] Length = 218 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 1/130 (0%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 +P+I ++ S +D G DD + KP E+LAR+ A+ RR + I Sbjct: 72 NIPVIFLTAKTSTMDKVDGLRLGADDYMVKPFEAIELLARIEAVLRRYGKVHKLLTYKNI 131 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V + R+ E+ G V L +E + L+ N+ +++ Q+ ++G+ D E V+ Sbjct: 132 TVNDEKREVELNGNVVYLTVKEYDLFLTLLKNKNIALSREQLIEKVWGI-DYYGETRTVD 190 Query: 192 SHISKLRKKL 201 HI+ LRKKL Sbjct: 191 MHINALRKKL 200 >gi|262274262|ref|ZP_06052073.1| putative transcriptional regulatory protein PhoP [Grimontia hollisae CIP 101886] gi|262220825|gb|EEY72139.1| putative transcriptional regulatory protein PhoP [Grimontia hollisae CIP 101886] Length = 224 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 3/154 (1%) Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNN 124 I RA ++P++ ++ + Q + D+G DD + KP E++AR+ A+ RR Sbjct: 66 IRRADIRMPILILTGRANWQDKVSGLDAGADDYLVKPFQKEELVARLNALVRRSAGFVKP 125 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 G I + + + G+ L E +LEYL+ + V+K ++ +Y D+ Sbjct: 126 EIRAGKITIDLLAKKVSIDGQSVELTAFEYDLLEYLVRYNRQVVSKQRLLDVLYQ--DQE 183 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + N +E +S+LRKKL +P+ + R GY Sbjct: 184 GDPNTIEVMMSRLRKKLTQAGQENPISTVRGQGY 217 >gi|302525129|ref|ZP_07277471.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302434024|gb|EFL05840.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 232 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 6/140 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + VP+I +S + D+G DD V KP E+LAR+ A RR V+ Sbjct: 72 LRGWTTVPIIVLSARGDSADKVQALDAGADDYVTKPFGMDELLARLRAAVRRSSVAGTDG 131 Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +TG + + +G L + E +LE L+ NRG+ VA+ Q+ ++G Sbjct: 132 AEAVVDTGSFTIDLAAKKVLREGREVHLTKTEWGVLELLVRNRGRLVAQKQLLHEVWGPS 191 Query: 182 DEAVEENVVESHISKLRKKL 201 E E + + ++++LR+KL Sbjct: 192 YE-TESHYLRVYLAQLRRKL 210 >gi|238752450|ref|ZP_04613926.1| Transcriptional regulatory protein baeR [Yersinia rohdei ATCC 43380] gi|238709299|gb|EEQ01541.1| Transcriptional regulatory protein baeR [Yersinia rohdei ATCC 43380] Length = 241 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 2/150 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + R IR S VP++ ++ L + G DD + KP RE++ARV I RR + Sbjct: 73 ISICREIRRFSNVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQ 132 Query: 121 VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +A + + R QG + L E R+L+ L G ++ Q+ + +Y Sbjct: 133 QQPEQAGDTATLIIDESRFQASYQGHMLELTPAEFRLLKILATQPGHVFSREQLLNNLYD 192 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP 209 + V + ++SHI LR+KL G P Sbjct: 193 DY-RVVTDRTIDSHIKNLRRKLEALDGEKP 221 >gi|237786072|ref|YP_002906777.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237758984|gb|ACR18234.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 248 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 54/225 (24%), Positives = 109/225 (48%), Gaps = 12/225 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKG 57 + V+ DD A+ + I L G EGF+++ + E + +++ ED I ++ Sbjct: 29 ILVVDDDPAIAEMLMIVLQG------EGFDTVVVGDGAEAVTAASNEDPDLILLDVMLPS 82 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIY 116 +++ R IR S VP++ +S + +SG DD +NKP +E++ARV A + Sbjct: 83 MNGVDVCRAIRKTSGVPIVMLSARTDTVDVVLGLESGADDYINKPFKPKELVARVRAQLR 142 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR + + + G + + G + G+ PL E +L L + + + + ++ Sbjct: 143 RREQATGDTIHVGDLVIDVPGHIVKRDGKEIPLTPIEFDLLTQLASRPKQVLTREELLRE 202 Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++G + + + V+ HI++LR K+ ++ + + R +GY I Sbjct: 203 VWG-YKQPTDTRVLNVHINRLRIKVEKDHKNPKLIQAVRGVGYKI 246 >gi|222152557|ref|YP_002561732.1| response regulator protein [Streptococcus uberis 0140J] gi|222113368|emb|CAR40995.1| response regulator protein [Streptococcus uberis 0140J] Length = 228 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 19/221 (8%) Query: 18 LFGDDGVSLEGFNSLEFE-------------EWLQSSAREDVSAIEAFLIGKGEKVLELP 64 L +D +L F SLE + E L+++ +D I L+ E+ Sbjct: 6 LIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFEVT 65 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123 R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 66 RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIETE 125 Query: 124 ----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N+ + + R + L +RE +L LM+N + + + ++ S ++ Sbjct: 126 KKAPNQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMSNMNRVMTREELLSNVWK 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 186 -YDEAVETNVVDVYIRYLRGKIDMPGRESYIQTVRGMGYVI 225 >gi|16761566|ref|NP_457183.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143047|ref|NP_806389.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213163396|ref|ZP_03349106.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213427815|ref|ZP_03360565.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582713|ref|ZP_03364539.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213650085|ref|ZP_03380138.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824413|ref|ZP_06544002.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25300975|pir||AF0838 transcription regulator tctD [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503867|emb|CAD05893.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29138680|gb|AAO70249.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 224 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 108/218 (49%), Gaps = 19/218 (8%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPR 65 ++ALV++G F D V F+ L + L S ++ A+ I G LE+ + Sbjct: 17 EKALVQNG----FAVDCV----FDGLAADHLLHS----EMYALMVLDINMPGMDGLEVVQ 64 Query: 66 IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 +R Q +P++ ++ ++ + + G DD + KP E+ AR+ A+ RR + Sbjct: 65 RLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSAGLVH 124 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + +F D +QG+ L RE+ +L LM R + V++ Q+F ++ L DE Sbjct: 125 EVQQLGELIFHDEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFSLNDEV 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 E+ +E +I +LRKKL+ G D + + R LGY ++ Sbjct: 185 SPES-IELYIHRLRKKLQ---GSDVRITTLRGLGYVLE 218 >gi|315646922|ref|ZP_07900037.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277852|gb|EFU41176.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 231 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 9/174 (5%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 E L + ED S I L G EL R IR + +VP++ +S + F+ G Sbjct: 37 EGLHLALNEDYSLIVVDLQLPGMNGFELCRQIRKNKEVPILIVSAKNEEIDKIRAFNLGA 96 Query: 96 DDVVNKPIHHREILARVAAI---YRRL-----KVSNNRAETGPIRVFSDGRDPEVQGEVF 147 DD + KP E++AR A Y+RL V N + + R V+ + Sbjct: 97 DDYITKPFSPSELVARAKAHLMRYKRLMGKQETVQNAEIHIRGLVIDKSARRVYVRNQEV 156 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 RE +LE+L ++ + +K ++F I+G+ D + + V H+ KLR+KL Sbjct: 157 VFTTREFNLLEFLASHPNRVFSKNELFERIWGM-DSSGDIATVTVHVRKLREKL 209 >gi|315039000|ref|YP_004032568.1| response regulator [Lactobacillus amylovorus GRL 1112] gi|312277133|gb|ADQ59773.1| response regulator [Lactobacillus amylovorus GRL 1112] gi|327184133|gb|AEA32580.1| response regulator [Lactobacillus amylovorus GRL 1118] Length = 233 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-- 122 R IR S VP+I ++ S D G+DD + KP E+ AR+ I RRLK + Sbjct: 69 RRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRRLKKTQE 128 Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N A T GP+++ + E L +E ++ LM + K ++ ++ + Sbjct: 129 QNAAPTSTFTFGPLKIDLVKHEFYCNDEKIYLTPKEFALMTELMQDPEKVKSRDELLDVV 188 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSI 220 +G +D + N V+ +I + +RNKLG +P + + R LGY + Sbjct: 189 WG-YDFVGQTNTVDVYI----RTIRNKLG-EPYKKLIKTVRGLGYCL 229 >gi|289648792|ref|ZP_06480135.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae pv. aesculi str. 2250] Length = 220 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 24/218 (11%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL +GY + +DG+S ++L E + + ++ F +L R +R Sbjct: 19 ALNTEGYTLDWLEDGLS--ALHALRSEPFDLLLLDLGLPRMDGF---------DLLRQLR 67 Query: 69 AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 A +P++ ++ + D+G DD + KP E+ ARV A+ RR S RA Sbjct: 68 AEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQ 124 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E I + + QG P+ E ++L LM GK V + ++ + +YG + + Sbjct: 125 PLLEDAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG-WQD 183 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE N +E I LRKKL +L + + R +GY ++ Sbjct: 184 KVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217 >gi|255523046|ref|ZP_05390018.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255513161|gb|EET89429.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 223 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 80/158 (50%), Gaps = 4/158 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SN 123 IR S+VP+I IS + + G DD ++KP ++A+V A+ RR + Sbjct: 67 IRKLSKVPIIFISSMSDSMNIIMAVNMGGDDFISKPFDLNILVAKVQALIRRTYSFGGTM 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + + E + L + E +IL+ L+ N GK + + I + ++ D Sbjct: 127 DIIEHNGVVLNLNNATIEYENNKIELTKNEFKILQILLENVGKAIPRDVIMTRLWE-SDS 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++N + ++++LRKKL + D V +K+ +GY ++ Sbjct: 186 YIDDNTLTVNVTRLRKKLSDAGICDFVKTKKGIGYVVE 223 >gi|238917142|ref|YP_002930659.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] gi|238872502|gb|ACR72212.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] Length = 238 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 7/149 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 L + + IR S VP+I ++ + D G DD + KP + E+ AR+ AI RR Sbjct: 71 LSVCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNS 130 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +N + G +++ D R + + L +E +LE L N GK ++ + Sbjct: 131 SITQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLL 190 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 A++G D + V+ H+ +LR+K+ N Sbjct: 191 KAVWGQ-DYTGDARTVDVHMRRLREKIEN 218 >gi|170746673|ref|YP_001752933.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170653195|gb|ACB22250.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 226 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 4/143 (2%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRA 126 A P++ +S ++ +D +G DD + KP E+ ARV A+ RR + N Sbjct: 70 AKVSTPVLILSALSAVNERVDGLRAGGDDYLAKPFEFIELTARVDALARRKMAAEAVNEL 129 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G +R+ R G L +E I+E+LM N G V++ IF +++G + + Sbjct: 130 VVGDLRLDLIERVLYCAGREIELLPKEFAIIEFLMQNAGTLVSRKMIFESVWG-YSFNHQ 188 Query: 187 ENVVESHISKLRKKLRNKLGFDP 209 +V++ HI K+RKKL + G +P Sbjct: 189 SSVIDVHIGKIRKKL-DPDGLNP 210 >gi|71737739|ref|YP_275609.1| DNA-binding response regulator QseB [Pseudomonas syringae pv. phaseolicola 1448A] gi|298487905|ref|ZP_07005945.1| DNA-binding response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71558292|gb|AAZ37503.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157630|gb|EFH98710.1| DNA-binding response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325046|gb|EFW81115.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae pv. glycinea str. B076] gi|320327849|gb|EFW83855.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae pv. glycinea str. race 4] gi|330988750|gb|EGH86853.1| DNA-binding response regulator QseB [Pseudomonas syringae pv. lachrymans str. M301315] Length = 220 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 24/218 (11%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL +GY + +DG+S ++L E + + ++ F +L R +R Sbjct: 19 ALNTEGYTLDWLEDGLS--ALHALRSEPFDLLLLDLGLPRMDGF---------DLLRQLR 67 Query: 69 AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 A +P++ ++ + D+G DD + KP E+ ARV A+ RR S RA Sbjct: 68 AEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQ 124 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E I + + QG P+ E ++L LM GK V + ++ + +YG + + Sbjct: 125 PLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG-WQD 183 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE N +E I LRKKL +L + + R +GY ++ Sbjct: 184 KVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217 >gi|86138139|ref|ZP_01056714.1| two-component response regulator [Roseobacter sp. MED193] gi|85825166|gb|EAQ45366.1| two-component response regulator [Roseobacter sp. MED193] Length = 224 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 3/161 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S+VP++ ++ + + G DD V KP RE++AR+ I +R + Sbjct: 61 EVCRRIRQRSEVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIRTIMKRSQK 120 Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + + ++ G+ L RE+ IL L+ + + ++ ++ S I+G Sbjct: 121 AQASTSLTHGELSLDPRAHRCQINGQEIALTAREQGILALLLQDPAQIRSRAELISQIWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + V + ++SH+ LR KL G D +++ +G + Sbjct: 181 AGSQ-VSDRTLDSHLRNLRAKLEQAGGNDLIETVHAVGIRL 220 >gi|241895394|ref|ZP_04782690.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241871368|gb|EER75119.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 233 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 83/167 (49%), Gaps = 13/167 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR HSQ+P+I ++ + + G DD + KP E+LAR+ R + +++ Sbjct: 68 RRIRKHSQMPVIMLTARDYIGDKVAGLTGGADDYMTKPFEVEELLARIEVSLRHSQKTDH 127 Query: 125 RAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +A+ G + V + + ++ PL +RE +L L+ N + ++ + ++G+ Sbjct: 128 QAKIYTVGDLTVDTTTKRVSRHNKIIPLTQREYELLVVLVMNEDEACSRDGLLDEVWGVD 187 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSIDWN 223 E + N+++ ++ + LR+K+ DP + K R +GY + N Sbjct: 188 FEG-QPNILDVYV----RNLRSKIDADPSNQKLIHTVRGVGYMLSQN 229 >gi|289424225|ref|ZP_06426008.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289428903|ref|ZP_06430583.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295129921|ref|YP_003580584.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory transduction protein regX3 [Propionibacterium acnes SK137] gi|289154922|gb|EFD03604.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289157904|gb|EFD06127.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291375523|gb|ADD99377.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory transduction protein regX3 [Propionibacterium acnes SK137] gi|313765549|gb|EFS36913.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313772902|gb|EFS38868.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313793076|gb|EFS41143.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313802476|gb|EFS43698.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313806491|gb|EFS44998.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313811042|gb|EFS48756.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313814457|gb|EFS52171.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313815050|gb|EFS52764.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313817360|gb|EFS55074.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313821896|gb|EFS59610.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313824208|gb|EFS61922.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313826576|gb|EFS64290.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313828760|gb|EFS66474.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313831805|gb|EFS69519.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313834651|gb|EFS72365.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|313840118|gb|EFS77832.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314915811|gb|EFS79642.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314917083|gb|EFS80914.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314921359|gb|EFS85190.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314926710|gb|EFS90541.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314931318|gb|EFS95149.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314954858|gb|EFS99264.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314958794|gb|EFT02896.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961083|gb|EFT05184.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964489|gb|EFT08589.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314969588|gb|EFT13686.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314974654|gb|EFT18749.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977150|gb|EFT21245.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314980434|gb|EFT24528.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314985752|gb|EFT29844.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314987275|gb|EFT31366.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314989181|gb|EFT33272.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315078496|gb|EFT50527.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315082041|gb|EFT54017.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315082819|gb|EFT54795.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315086175|gb|EFT58151.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315087760|gb|EFT59736.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315097486|gb|EFT69462.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315099937|gb|EFT71913.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315101750|gb|EFT73726.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315110294|gb|EFT82270.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327331428|gb|EGE73167.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL096PA2] gi|327333415|gb|EGE75135.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL096PA3] gi|327334938|gb|EGE76649.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL097PA1] gi|327445567|gb|EGE92221.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327447187|gb|EGE93841.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327449779|gb|EGE96433.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327454628|gb|EGF01283.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456700|gb|EGF03355.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|327457024|gb|EGF03679.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|328755683|gb|EGF69299.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328756463|gb|EGF70079.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328758807|gb|EGF72423.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328761843|gb|EGF75355.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL099PA1] gi|332674761|gb|AEE71577.1| sensory transduction protein RegX [Propionibacterium acnes 266] Length = 226 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 14/166 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ R +R V +I ++ S + + G DD V KP HRE++AR+ A+ RR Sbjct: 62 EVCRQLRQRGNVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGGP 121 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++VS + E +R+ + + V G L +E +LE L+ N G+ + + + + Sbjct: 122 EIEVSPDVLEESGVRMDVERHEVSVGGTAVRLALKEFDLLEVLLRNAGRVMTRASLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 +G D + ++ HI +LR K+ + DP + + R LGY Sbjct: 182 WG-ADYVGDTKTLDVHIKRLRAKIED----DPSRPVRIITVRGLGY 222 >gi|109453282|gb|ABG34121.1| PhoP [Salmonella enterica subsp. salamae] Length = 213 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 5/212 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ ++ + D++ ++ L E L Sbjct: 4 LVVEDNALLRHHLKVQLQDSGHQVDAPEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R+ +P++ ++ Q ++ SG DD V KP H E++AR+ A+ RR Sbjct: 62 LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ V EV L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E E + ++ + +LRKK++ + D + + Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHDVITT 212 >gi|120553067|ref|YP_957418.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120322916|gb|ABM17231.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 221 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 54/220 (24%), Positives = 106/220 (48%), Gaps = 10/220 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDV-SAIEAFLIGKGEKV 60 +L++D L+ +G + G S++ +S + L +ED +A+ + G + Sbjct: 3 LLLVEDDRLLAEGLVRQLEKAGFSIDHTSSAREAQIL--GEQEDYRAAVLDLGLPDGNGL 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R + P++ ++ Q ++ +G DD + KP E++AR+ A+ RR + Sbjct: 61 EVLKRWRSKLVECPVLVLTARGDWQDKVNGLKAGADDYLAKPFQTEELIARINALIRRSE 120 Query: 121 VS-NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++ + G + + + +G L E R+L LM+ G +K Q+ +Y Sbjct: 121 GRVHSQVKAGGFELDENRQSLRTEEGAEHALTGTEFRLLRCLMSRPGHIFSKEQLMEQLY 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L DE+ ENV+E++I +LRK +G + + ++R GY Sbjct: 181 NL-DESPSENVIEAYIRRLRK----LVGNETITTRRGQGY 215 >gi|257455665|ref|ZP_05620894.1| DNA-binding response regulator [Enhydrobacter aerosaccus SK60] gi|257446948|gb|EEV21962.1| DNA-binding response regulator [Enhydrobacter aerosaccus SK60] Length = 225 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/224 (22%), Positives = 102/224 (45%), Gaps = 13/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D A + DG + + ++ F + E D ++ + +G+ + Sbjct: 4 ILLIEDDATIADGIVKGLSQQNMMVDWFADAKLGEMAIHEGVFDAVLLD-LTLPRGDGMT 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + P++ I+ ++ + ++G DD + KP E++AR+ A+ RR Sbjct: 63 ILANWRQQKIDTPVLIITARDAIANRVAGLNAGADDYLVKPFALDEVVARLQALIRR--- 119 Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S R++T G + + QG+ L +E +LE ++ ++ + + Sbjct: 120 SQGRSQTEIRYGDVSYLPQQQQVFYQGKWVDLTAKEITVLEQFISYPNLVHSRASLEDKL 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 YG + + +E N +E HI LRKKL N D + ++R +GY ++ Sbjct: 180 YG-WQQDIESNAIEVHIHNLRKKLGN----DFILTRRGIGYYLN 218 >gi|251771943|gb|EES52515.1| two component transcriptional regulator, winged helix family [Leptospirillum ferrodiazotrophum] Length = 269 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 86/159 (54%), Gaps = 14/159 (8%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN------R 125 +VP + +++ +T + ++G D+V++ P RE LAR+ A+ RR + N R Sbjct: 110 KVPAMVLTEGTDPETRVRVLEAGADEVLSVPCPPRETLARIRALLRRDESKENNPYAPAR 169 Query: 126 AETGPIRVFSDGRD---PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 E G + V +D + E + +V PL E RIL +L+ + GK + ++ S ++G Sbjct: 170 YEVGELIVDTDRHEVVWQEKRIQVTPL---EFRILVHLVRDPGKVYPREELMSLLWGEHW 226 Query: 183 EAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 E VE++ + HI LRKKL R + P+++ R +GY I Sbjct: 227 E-VEDHNLSVHIHGLRKKLARPEDDRTPIETVRGVGYRI 264 >gi|58039171|ref|YP_191135.1| phosphate regulon response regulator PhoB [Gluconobacter oxydans 621H] gi|58001585|gb|AAW60479.1| Phosphate regulon response regulator PhoB [Gluconobacter oxydans 621H] Length = 240 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 88/184 (47%), Gaps = 6/184 (3%) Query: 41 SAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDD 97 +AR D ++ L G L++ R IRA+ VP++ ++ + Q + D+G DD Sbjct: 52 TARPDAVVLDWML--PGLSGLDVCRRIRANPALRDVPVLLLTARSAEQDAIRGLDTGADD 109 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRIL 157 + KP + AR+ A+ RR + S +R I + + E G + L E R+L Sbjct: 110 YLMKPCSIDTLDARLRALLRRHQSSYDRLSFADITLDPETHRVERAGRMLSLGPTEYRLL 169 Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217 + L+ N K ++ + I+G + VE ++ HI +LRK + D V + R G Sbjct: 170 DLLIRNPRKVFSRENLLRRIWG-QNIHVEIRTIDVHIRRLRKAINGPGEVDLVRTVRAAG 228 Query: 218 YSID 221 Y++D Sbjct: 229 YALD 232 >gi|326940933|gb|AEA16829.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 228 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121 IR +P+I +S + SG DD ++KP + E++ARV + RR K + Sbjct: 68 IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTSI 127 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N++ E G + V +D R V+G+ L +E ILE L N+G ++ +I+ A++ Sbjct: 128 EHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIYEAVWK 187 Query: 180 -LFDEAVEENVVESHISKLRKKL 201 +F ++ +N V HI+K+R K+ Sbjct: 188 EVFYKS--DNTVMVHITKIRDKI 208 >gi|323487407|ref|ZP_08092704.1| DNA-binding response regulator DltR [Clostridium symbiosum WAL-14163] gi|323399264|gb|EGA91665.1| DNA-binding response regulator DltR [Clostridium symbiosum WAL-14163] Length = 225 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 11/162 (6%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R Q P I + L ++ D+G DD + KP E+LAR+ A+ RRL R E Sbjct: 68 RRKIQTPAIFSTALDGLNDRINGLDAGADDYIAKPYAIEELLARIRAVTRRL----GRIE 123 Query: 128 TGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 F D R+ Q L ++E +LEY N G+ + + I ++G Sbjct: 124 EECTLTFEDLVFLPEHRELRYQNASVSLSKKESSLLEYFFRNPGRTLNREVILGYVWGAS 183 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E VE+ ++++I LR++LR + + +GY ++ N Sbjct: 184 SE-VEDGNLDNYIYFLRRRLRTLNAPVKITTVHGVGYRLEKN 224 >gi|313890851|ref|ZP_07824475.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026] gi|332522247|ref|ZP_08398499.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176] gi|313120749|gb|EFR43864.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026] gi|332313511|gb|EGJ26496.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176] Length = 228 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 19/221 (8%) Query: 18 LFGDDGVSLEGFNSLEFE-------------EWLQSSAREDVSAIEAFLIGKGEKVLELP 64 L +D +L F SLE + E L+++ +D I L+ E+ Sbjct: 6 LIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFEVT 65 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123 R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 66 RRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIETE 125 Query: 124 ----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N+ + + R + L +RE +L LM N + + + ++ S ++ Sbjct: 126 KKAPNQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSNVWK 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 186 -YDEAVETNVVDVYIRYLRGKIDMPGRESYIQTVRGMGYVI 225 >gi|310778503|ref|YP_003966836.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309747826|gb|ADO82488.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 219 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 100/204 (49%), Gaps = 22/204 (10%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQ-VPLIGIS 79 L+ E +L A + AIE F K + V+ ++ R IR+ + VP+I ++ Sbjct: 22 LKKEGYLVIEAEDGEQAIEFFFNNKIDLVILDIMMPKLDGWDVCREIRSERKNVPIIMLT 81 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDG 137 L + D+ V KP+ + ++A+V A+ RR +NN + G + + Sbjct: 82 AKGDEDDILKGYKLKTDEYVTKPVSLKILMAKVKALLRR---NNNDSIINMGKLIINDSS 138 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 + GE+ L RE +L Y + N+G +++ +I ++++G +D + V+S I ++ Sbjct: 139 HVVTLDGEILELSPREYEMLLYFVINKGIALSREKIITSLWG-YDYEGDRRAVDSQIKRI 197 Query: 198 RKKLRNKLGFDPVDSKRFLGYSID 221 RK KLG + +++ R +GY + Sbjct: 198 RK----KLGGEYIETVRGVGYKFE 217 >gi|294782843|ref|ZP_06748169.1| DNA-binding response regulator ArlR [Fusobacterium sp. 1_1_41FAA] gi|294481484|gb|EFG29259.1| DNA-binding response regulator ArlR [Fusobacterium sp. 1_1_41FAA] Length = 227 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 95/200 (47%), Gaps = 18/200 (9%) Query: 18 LFGDDGVSLEGFNSLEFEE--WLQSSAREDVSAIEAFLIGKGEKVL-----------ELP 64 L +D +++ SLE + ++ SSA + +E F + VL EL Sbjct: 8 LIIEDDKNIQRLLSLELKHKGYMVSSAYDGEEGLELFTKNSYDVVLLDLMLPKKSGKELC 67 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 + R + P+I + ++ ++ D G +D + KP E+LAR+ + R + S++ Sbjct: 68 QEFRKLTDTPIIITTAKDNVLDKVELLDLGANDYICKPFAIEELLARIRVVTRNRENSSD 127 Query: 125 RAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + D +V Q E+ L + E ILEY M NR ++ +I + ++G + Sbjct: 128 KQIYFENEIKLDLTTKKVFINQKEI-SLTKTEFLILEYFMKNRAISCSREKILTGVWG-Y 185 Query: 182 DEAVEENVVESHISKLRKKL 201 D EE +V+ +I+ LRKK+ Sbjct: 186 DFDGEEKIVDVYINSLRKKM 205 >gi|160878516|ref|YP_001557484.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427182|gb|ABX40745.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 229 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 9/167 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E ++ + P+I +S L + +D G DD + KP +E+L R+ RR+ Sbjct: 62 EFLKLFNKKERTPVIVLSAKDELDSKVDVLSCGADDYITKPFQLKELLVRIEVALRRVNR 121 Query: 120 KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ ET D + + G + L ++E +ILE L+ + K +K +I Sbjct: 122 NIEKSQDETNQCLSHKDLLLNRSSYEVRLAGNLISLTKQEYKILELLLLHPNKVFSKQEI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + + E+ + HIS +R KL+ D +D+ +G+ + Sbjct: 182 YNYAWEEYFIG-EDKTINVHISNIRMKLKKVTEDDYIDTVWGIGFKL 227 >gi|50841610|ref|YP_054837.1| two-component response regulator, KdpE [Propionibacterium acnes KPA171202] gi|282853167|ref|ZP_06262504.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes J139] gi|289424544|ref|ZP_06426327.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes SK187] gi|289427413|ref|ZP_06429126.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes J165] gi|295129651|ref|YP_003580314.1| DNA-binding response regulator KdpE [Propionibacterium acnes SK137] gi|50839212|gb|AAT81879.1| two-component response regulator, KdpE [Propionibacterium acnes KPA171202] gi|282582620|gb|EFB88000.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes J139] gi|289155241|gb|EFD03923.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes SK187] gi|289159343|gb|EFD07534.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes J165] gi|291375781|gb|ADD99635.1| DNA-binding response regulator KdpE [Propionibacterium acnes SK137] gi|313771208|gb|EFS37174.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL074PA1] gi|313806990|gb|EFS45488.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL087PA2] gi|313811899|gb|EFS49613.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL083PA1] gi|313814092|gb|EFS51806.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL025PA1] gi|313817774|gb|EFS55488.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL046PA2] gi|313821400|gb|EFS59114.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL036PA1] gi|313824655|gb|EFS62369.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL036PA2] gi|313826324|gb|EFS64038.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL063PA1] gi|313828890|gb|EFS66604.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL063PA2] gi|313832090|gb|EFS69804.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL007PA1] gi|313832894|gb|EFS70608.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL056PA1] gi|313839754|gb|EFS77468.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL086PA1] gi|314922627|gb|EFS86458.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL001PA1] gi|314926441|gb|EFS90272.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL036PA3] gi|314961462|gb|EFT05563.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL002PA2] gi|314969258|gb|EFT13356.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL037PA1] gi|314975328|gb|EFT19423.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL053PA1] gi|314977744|gb|EFT21839.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL045PA1] gi|314980122|gb|EFT24216.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL072PA2] gi|314982686|gb|EFT26778.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL110PA3] gi|314985281|gb|EFT29373.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL005PA1] gi|314990529|gb|EFT34620.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL005PA3] gi|315081718|gb|EFT53694.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL078PA1] gi|315082908|gb|EFT54884.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL027PA2] gi|315086743|gb|EFT58719.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL002PA3] gi|315088146|gb|EFT60122.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL072PA1] gi|315091346|gb|EFT63322.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL110PA4] gi|315097031|gb|EFT69007.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL038PA1] gi|315104999|gb|EFT76975.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL050PA2] gi|315107591|gb|EFT79567.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL030PA1] gi|315109998|gb|EFT81974.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL030PA2] gi|327332628|gb|EGE74363.1| KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL096PA2] gi|327333805|gb|EGE75522.1| KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL096PA3] gi|327334683|gb|EGE76394.1| KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL097PA1] gi|327444730|gb|EGE91384.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL013PA2] gi|327446589|gb|EGE93243.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL043PA2] gi|327448969|gb|EGE95623.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL043PA1] gi|328757844|gb|EGF71460.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL020PA1] gi|328759713|gb|EGF73310.1| KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL099PA1] gi|332674521|gb|AEE71337.1| KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes 266] Length = 227 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 12/151 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G KV+E +R S P++ IS ++ D+G DD V KP E+LAR+ + Sbjct: 59 GVKVIE---AVRGWSSAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLT 115 Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR + + + PI F G L E R+LE L+ N G+ V + Sbjct: 116 RR--IGQDEVDEEPIVAFGSVWVDLAAHTVTRDGANVRLTPTEWRVLELLIRNEGRLVTR 173 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + S ++G + + + +IS+LRKKL Sbjct: 174 QTMLSQVWG-SEHVTDTGYLRLYISQLRKKL 203 >gi|77404656|ref|YP_345230.1| two component transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77390306|gb|ABA81489.1| two component transcriptional regulator, winged-helix family [Rhodobacter sphaeroides 2.4.1] Length = 219 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 6/150 (4%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGP 130 P+I ++ + +D ++G DD + KP E+ AR+ ++ RR + N G Sbjct: 72 STPVIILTALDQITERIDGLNAGADDYLVKPFDLAELSARIGSVARRYGGNPNPVVRLGA 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 V R +G PL RE +LE +A + ++K Q+ ++ F+ +E N + Sbjct: 132 FEVDLAARTIRREGRPVPLTAREWVLLEAFLARPNQVLSKAQLEERLWS-FEAEIESNAI 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++S+LR+KL + + +++ R LGY + Sbjct: 191 EVYVSRLRRKLDHSV----IETVRGLGYRL 216 >gi|322831824|ref|YP_004211851.1| transcriptional regulator [Rahnella sp. Y9602] gi|321167025|gb|ADW72724.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 227 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 101/216 (46%), Gaps = 23/216 (10%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 D + L G GV EG S E+ + D+S I+ R +R +S+ Sbjct: 26 DASLVLTGKAGV--EGAMSGEYTAMILDIMLPDMSGIDVL------------RQVRKNSR 71 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNRA 126 +P+I ++ + + G DD + KP + RE++AR+ A+ RR++ N+ Sbjct: 72 LPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRVEEQQESHSDNSSV 131 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + R E +G F L E +LE L+ + + V+K ++ G EA + Sbjct: 132 NYGDLTLNPATRSSEWRGVPFDLTASEFNLLELLLRSPERVVSKDELSEKGLGRPREAYD 191 Query: 187 ENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSI 220 + ++ HIS +R+KL + G D +++ R +GY I Sbjct: 192 RS-IDVHISNIRQKLGSLEGGDILTIETVRSIGYRI 226 >gi|313792774|gb|EFS40855.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL110PA1] gi|313803438|gb|EFS44620.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL110PA2] gi|314964147|gb|EFT08247.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL082PA1] gi|315078949|gb|EFT50967.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL053PA2] gi|327457282|gb|EGF03937.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL092PA1] Length = 227 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 12/151 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G KV+E +R S P++ IS ++ D+G DD V KP E+LAR+ + Sbjct: 59 GVKVIE---AVRGWSSAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLT 115 Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR + + + PI F G L E R+LE L+ N G+ V + Sbjct: 116 RR--IGQDEVDEEPIVAFGSVWVDLAAHTVTRDGANVRLTPTEWRVLELLIRNEGRLVTR 173 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + S ++G + + + +IS+LRKKL Sbjct: 174 QTMLSQVWG-SEHVTDTGYLRLYISQLRKKL 203 >gi|307709734|ref|ZP_07646185.1| nisin biosynthesis regulatory protein nisR [Streptococcus mitis SK564] gi|307619436|gb|EFN98561.1| nisin biosynthesis regulatory protein nisR [Streptococcus mitis SK564] Length = 228 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 79/145 (54%), Gaps = 4/145 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117 LE+ ++IR VP+ I+ + + ++G DD + KP +E+LARV R Sbjct: 60 LEICQMIREQITVPICFITAKDMDEDLVAGINAGADDYIMKPFSMQELLARVKMHLRREE 119 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R+K + ++ + G + +++D ++ V + L RRE I+ L +N K + +I++ + Sbjct: 120 RIKGNVHQIKIGKLILYTDSKELFVNDDKIALTRREFDIVNLLASNPSKIYSIEEIYNYL 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202 Y EA+ +V E +I ++R+KL+ Sbjct: 180 YPQSSEALLRSVSE-YIYQIRQKLK 203 >gi|285017381|ref|YP_003375092.1| two-component system regulatory protein phob [Xanthomonas albilineans GPE PC73] gi|283472599|emb|CBA15104.1| probable two-component system regulatory protein phob [Xanthomonas albilineans] Length = 229 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 81/174 (46%), Gaps = 20/174 (11%) Query: 57 GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G LEL R R + +VP+I ++ + ++GVDD V KP RE+LAR+ Sbjct: 58 GTSGLELARRWRKDAMTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIR 117 Query: 114 AIYRRLK---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 A+ RR + V N R + RVF+ G P P+ E R+L + M + Sbjct: 118 AVMRRTREDDEDGSVSVGNLRIDGAAHRVFA-GDAP------VPIGPTEYRLLHFFMTHP 170 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + ++ Q+ ++G VEE ++ HI +LRK L + V + R GY Sbjct: 171 ERVYSRAQLLDHVWG-GSVYVEERTIDVHIRRLRKTLEPFAVENMVQTVRGSGY 223 >gi|271499378|ref|YP_003332403.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270342933|gb|ACZ75698.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 226 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 14/170 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ R +R + +P+I ++ + + G DD V KP + RE++AR+ A+ RR + Sbjct: 60 IDVLRQVRRNHAIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYE 119 Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++E G + V R E +G+ F L E +LE LM + + V K ++ Sbjct: 120 DKSEKSEDAGTVSYGDLVVCPSTRSSEWRGKAFDLTASEFNLLELLMRSSSRVVTKDELS 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD----PVDSKRFLGYSI 220 G EA + + V+ HIS +R+KL D +++ R +GY I Sbjct: 180 EKCLGRRREAYDRS-VDVHISNIRQKL---AALDECNLTIETVRSVGYRI 225 >gi|239617943|ref|YP_002941265.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506774|gb|ACR80261.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 239 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 57/202 (28%), Positives = 93/202 (46%), Gaps = 22/202 (10%) Query: 27 EGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA---HSQVPLIGISD 80 EG++ L + EE L+ DV ++ G EL R +R+ H P+I +S Sbjct: 26 EGYDVLKAYDAEEALKIVEDNDVDMFIVDIMLPGMDGFELVRNLRSTEKHRHTPVIFLSA 85 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP 140 + + G DD + KP RE LAR+ AI+RR++ S E P ++ + RD Sbjct: 86 KSEEFDKVLGLELGADDYITKPFSVREALARIRAIFRRIQQSVQAKEERPKKITA--RDL 143 Query: 141 E---------VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 E V+G++ L E +L +L N GK ++ + ++G +D + V+ Sbjct: 144 EIDTEKYEVRVRGKLVNLTPLEFELLRFLAENEGKVFSRDVLLDKLWG-YDYYGDTRTVD 202 Query: 192 SHISKLRKKLRNKLGFDPVDSK 213 HI +LR K+ DP + K Sbjct: 203 VHIRRLRTKIEE----DPSNPK 220 >gi|206973171|ref|ZP_03234093.1| two component transcriptional regulator, winged helix family [Bacillus cereus AH1134] gi|206732055|gb|EDZ49255.1| two component transcriptional regulator, winged helix family [Bacillus cereus AH1134] Length = 342 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121 IR +P+I +S + SG DD ++KP + E++ARV + RR K + Sbjct: 182 IREDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNSSI 241 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY- 178 +N++ E G + V +D R V+G+ L +E ILE L N+G ++ +I+ A++ Sbjct: 242 GHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVMSVAKIYEAVWE 301 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 +F ++ +N V HI+K+R K+ Sbjct: 302 EVFYKS--DNTVMVHITKIRDKI 322 >gi|149909235|ref|ZP_01897892.1| DNA-binding response regulator BaeR [Moritella sp. PE36] gi|149807759|gb|EDM67705.1| DNA-binding response regulator BaeR [Moritella sp. PE36] Length = 230 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 10/178 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G+ + L + IR S VP+I ++ L + G DD + KP RE++ARV Sbjct: 53 LMLPGKDGITLCKEIRQFSAVPIIMVTARVDEIDRLIGLELGADDYICKPFSPREVVARV 112 Query: 113 AAIYRRLKV---SNNRAETGPIRVFSDGRDPE-VQGEVFPLPRR----ERRILEYLMANR 164 A+ RR + S ++++T DPE Q VF +P E +L+ L Sbjct: 113 KAVLRRTQSQTQSLDKSDTIKSTPKVVELDPEKYQARVFGIPVELTAIEFNLLQILAKEP 172 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 G+ +++Q+ + +Y V E ++SHI KLRKKL + K + V S +GY ++ Sbjct: 173 GRIYSRSQLMNHVYH-DHRVVSERTIDSHIKKLRKKLNDIKPDMELVQSVYSVGYKLE 229 >gi|55822759|ref|YP_141200.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|55738744|gb|AAV62385.1| response regulator (homolog to ciaR Spn), truncated [Streptococcus thermophilus CNRZ1066] Length = 173 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 2/131 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 P++ ++ SL F+ GVDD + KP + E+ R+ A+ +R K N G + Sbjct: 27 TPVLIMTAKESLDDKGHGFELGVDDYLTKPFYLEELKMRIQALLKRSGKFDQNTFSFGDV 86 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V V + L +E +L Y + N+ + K+QIF ++G FD +VVE Sbjct: 87 CVNLSTNSTYVGDKEVELLGKEFDLLVYFLQNQNVILPKSQIFDRLWG-FDSDTNVSVVE 145 Query: 192 SHISKLRKKLR 202 ++SK+RKKL+ Sbjct: 146 VYVSKIRKKLK 156 >gi|116618821|ref|YP_819192.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097668|gb|ABJ62819.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 229 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 76/148 (51%), Gaps = 8/148 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R + P+I ++ S+ + D G DD + KP E+LAR+ ++ RR+ Sbjct: 61 LEVARRLREVKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIA 120 Query: 121 V---SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + +N++ + +R+ + R ++ L +RE +L L+ N ++ Q+ Sbjct: 121 IETETNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G FD VE NVV+ +I LR K+ Sbjct: 181 LKEVWG-FDSEVETNVVDVYIRYLRNKI 207 >gi|313764887|gb|EFS36251.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL013PA1] gi|313815549|gb|EFS53263.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL059PA1] gi|314916347|gb|EFS80178.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL005PA4] gi|314917344|gb|EFS81175.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL050PA1] gi|314921948|gb|EFS85779.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL050PA3] gi|314930787|gb|EFS94618.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL067PA1] gi|314955091|gb|EFS99496.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL027PA1] gi|314959289|gb|EFT03391.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL002PA1] gi|315099638|gb|EFT71614.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL059PA2] gi|315102131|gb|EFT74107.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL046PA1] gi|327454381|gb|EGF01036.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL087PA3] gi|327456448|gb|EGF03103.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL083PA2] gi|328756141|gb|EGF69757.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL087PA1] gi|328758521|gb|EGF72137.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL025PA2] Length = 227 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 12/151 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G KV+E +R S P++ IS ++ D+G DD V KP E+LAR+ + Sbjct: 59 GVKVIE---AVRGWSSAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLT 115 Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR + + + PI F G L E R+LE L+ N G+ V + Sbjct: 116 RR--IGQDEVDEEPIVAFGSVWVDLAAHTVTRDGANVRLTPTEWRVLELLIRNEGRLVTR 173 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + S ++G + + + +IS+LRKKL Sbjct: 174 QTMLSQVWG-SEHVTDTGYLRLYISQLRKKL 203 >gi|306819902|ref|ZP_07453555.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552059|gb|EFM39997.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 244 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 12/174 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LEL R IR S VP+I +S + + G DD + KP RE++ RV I +R+ Sbjct: 71 LELCREIRKTSDVPIIFVSARSEELDRILGLELGADDYLAKPFSPRELMVRVKTILKRVS 130 Query: 121 VSNN------RAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + N + E ++V + D + + + P +E ILEYL+ N ++ Sbjct: 131 QNANADSKDKKEEPKVLKVSDFEMYPDIKLAKYKNTEIPFTIKEFDILEYLLRNISTPLS 190 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + QI + I+G + E N V+ I ++RKKL+ + + +GY ID N Sbjct: 191 REQITAKIWGNDRDGYERN-VDDAIKRVRKKLKEYRVNLEIRTVWGIGYRIDVN 243 >gi|295093634|emb|CBK82725.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 224 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 5/152 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--G 129 +VP+I ++ + + D G DD + KP E+++RV A+ RR + + + G Sbjct: 76 RVPIILVTAKTTELDKVKGLDIGADDYLTKPFGVMELISRVKALLRRSRALQDDKQLVLG 135 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I + S+ R+ V GE+ L +E +L+ LM N G + + I S ++G D E Sbjct: 136 DITLDSERREVHVGGELCELTFKEFELLKLLMVNAGIVLHRDTIMSDVWGT-DYEGESRT 194 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ HI LR+KL + + + R +GY ++ Sbjct: 195 LDMHIKTLRQKLGE--AGNMIKTVRNVGYKME 224 >gi|268610267|ref|ZP_06143994.1| two-component response regulator [Ruminococcus flavefaciens FD-1] Length = 223 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R H P++ ++ + + F SG DD + KP E+ AR+AA RR Sbjct: 60 FEVCRKVRDHVSCPILFLTARIEDEDKIQGFASGGDDYILKPFSLDELGARIAAHIRR-- 117 Query: 121 VSNNRAETGPIRVFSDG------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +R F D + + E L ++E I+E L N G+ K +I+ Sbjct: 118 -DHRSTAASNVRFFGDTVVNYTEKTVSCKDEQLDLTKKEYGIIELLSLNAGQVFDKERIY 176 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 I+G +D + +V+ HI ++R KL Sbjct: 177 EKIWG-YDAEGDSSVIAEHIRRIRAKL 202 >gi|229014964|ref|ZP_04172045.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228746314|gb|EEL96236.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121 IR +P+I +S + SG DD + KP + E++ARV + RR K + Sbjct: 68 IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKKYNTSI 127 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++N++ E G + V +D R V+G+ L +E ILE L N+G ++ +I+ A++ Sbjct: 128 NHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLARNKGIVLSVAKIYEAVWK 187 Query: 180 -LFDEAVEENVVESHISKLRKKL 201 +F ++ +N V HI+K+R K+ Sbjct: 188 EVFYKS--DNTVMVHITKIRDKI 208 >gi|170761841|ref|YP_001786289.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169408830|gb|ACA57241.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 223 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 4/160 (2%) Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L ++IR +++ VP++ I+ + + F G DD + KPI E++ RV A+ RR ++ Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRSQI 122 Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N R G D + + LP++E ++ L++ K + Q+ I+G+ Sbjct: 123 INERRIVIGETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIWGI 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E + V+ HI++LR + ++ F+ + + R LGY + Sbjct: 183 ESET-DPRTVDVHINRLRDRFKDNKDFNII-TIRGLGYKV 220 >gi|220912472|ref|YP_002487781.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219859350|gb|ACL39692.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 228 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 15/166 (9%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IRA S +P++ +S ++ D+G DD V KP E+LAR+ A+ RR + Sbjct: 65 RGIRAWSDLPIVVLSARQGSADKVEALDAGADDYVTKPFGLDELLARLRAVERRSAHTPA 124 Query: 125 RA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-L 180 +TG + + G+ L RE +L+ L+ NRGK + + Q+ ++G Sbjct: 125 GVAVIQTGNLLIDLGAATVTRNGKRVHLTPREWDVLQLLVTNRGKLITQRQLLQTVWGPA 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL-----GYSID 221 + E E + ++++LR+KL DP K + GY D Sbjct: 185 YQE--ETQYLRVYMAQLRRKLET----DPAHPKHLITAAGQGYRFD 224 >gi|166030722|ref|ZP_02233551.1| hypothetical protein DORFOR_00396 [Dorea formicigenerans ATCC 27755] gi|166029514|gb|EDR48271.1| hypothetical protein DORFOR_00396 [Dorea formicigenerans ATCC 27755] Length = 220 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 3/158 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IRA P++ ++ + ++ G DD ++KP E+ AR+ A RR Sbjct: 61 ELCKRIRALVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120 Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ R G + + + + + P + E I E+L NRG+ +K QI ++G Sbjct: 121 EHSVRMVLGRVCIQMSQKKLLMDDKELPFTKAEYEICEFLAKNRGQVFSKEQILEEVFG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD ++ + +HI +R K + + P+ + +GY Sbjct: 180 FDSESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGY 216 >gi|86356687|ref|YP_468579.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86280789|gb|ABC89852.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 230 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 5/155 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126 A P + ++ + ++ ++G DD + KP E+LARV A+ RR V R Sbjct: 72 AKVGTPALFLTSIGGVDDRVEGLEAGGDDYLTKPFAFSELLARVNALGRRPPVQEQRTVL 131 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 + + + R+ G+ L RE +LE LM G+ + KT + ++ FD Sbjct: 132 KVADLELDLIRREARRAGQAIELQPREFTLLEVLMRGEGRVITKTMLLERVWDFHFDP-- 189 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +VVE+HIS+LR K+ + + R GYS+ Sbjct: 190 KTSVVETHISRLRAKVDKPFQAQLLHTIRNTGYSL 224 >gi|323704512|ref|ZP_08116090.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535974|gb|EGB25747.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 231 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 74/156 (47%), Gaps = 12/156 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R IR P++ +S S + F G DD V KP +E+LAR+ A RR K Sbjct: 61 EVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120 Query: 121 -VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N + + F + R+ V+G L ++E +LE L + G+ +K QI Sbjct: 121 AILLNEEKKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 + ++G FD + V HI +R K+ GFDP Sbjct: 181 YEKVWG-FDAEGDTTTVTEHIKNIRAKIG---GFDP 212 >gi|319653853|ref|ZP_08007947.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] gi|317394389|gb|EFV75133.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] Length = 227 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 7/167 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE + +R ++QVP++ +S + +G DD + KP + E+ ARV A+ RR Sbjct: 61 LEFCKYVRKNNQVPILMVSAKAEDMDKIMGLMTGADDYMIKPFNPLELAARVKALLRRAN 120 Query: 121 V-SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +A+ G + + +G L RE IL L NRG+ A +IF Sbjct: 121 YKTTGKADDVLYIGSVAIDKRSHGVTAEGSEIKLTAREFEILYLLAKNRGRVYASEEIFE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ E + V+ HIS +R+KL L G + + +GY I+ Sbjct: 181 KVWNEPGEGSNKTVM-VHISNIREKLEAALPGESVIQTVWGVGYKIE 226 >gi|300716267|ref|YP_003741070.1| DNA-binding transcriptional regulator [Erwinia billingiae Eb661] gi|299062103|emb|CAX59219.1| DNA-binding transcriptional regulator [Erwinia billingiae Eb661] Length = 222 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 2/149 (1%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132 P++ ++ Q ++ ++G DD V KP H E++AR+ A+ RR +++ P + Sbjct: 74 PILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVVARMQALMRRNSGLASQIISLAPFQ 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 V R+ + L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 134 VDLSRRELTINDTQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLYP-DAELRESHTIDV 192 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +LRKK++ + D + + R GY D Sbjct: 193 LMGRLRKKMQAEHPLDVITTVRGQGYRFD 221 >gi|226303939|ref|YP_002763897.1| OmpR family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183054|dbj|BAH31158.1| probable OmpR family two-component response regulator [Rhodococcus erythropolis PR4] Length = 231 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 5/135 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--- 127 ++VP+ +S S+ + ++G DD + KP E++AR+ A+ RR + + Sbjct: 75 NEVPICVLSARSSVGDRIAGLEAGADDYLTKPFELAELVARLRALLRRTTRATPSVDHPI 134 Query: 128 -TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 GP+ V G + G L +RE +L L + G +++ Q+ ++G +D A + Sbjct: 135 TVGPLTVDLRGHRAHIDGGRIELTKREFDLLSVLAEHAGVVLSRAQLLRLVWG-YDFAAD 193 Query: 187 ENVVESHISKLRKKL 201 NVV+ ++ LRKKL Sbjct: 194 TNVVDVFVTYLRKKL 208 >gi|217969842|ref|YP_002355076.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217507169|gb|ACK54180.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 230 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 16/185 (8%) Query: 50 EAFLIGKGEKVL----ELPRI--------IRAH-SQVPLIGISDYPSLQTTLDFFDSGVD 96 +A L G+G +L LPR+ +RA S P++ ++ + + D+G D Sbjct: 37 DAALAGQGYDLLILDLGLPRMNGIEVLKRLRARKSAQPVLILTAQDGVDDRVRGLDAGAD 96 Query: 97 DVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156 D + KP E+ ARV A+ RR E G + R ++ G++ L RE + Sbjct: 97 DYLTKPFALPELEARVRALTRRGTGQPRCIEIGQLSYDQADRVVKIGGQLVELSAREIGL 156 Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 LE + G+ V+K Q+ + G + E V N +E ++ +LRKKL + G V + R L Sbjct: 157 LEIFLLRVGRLVSKDQLVDHLCG-WGEEVSSNAIEVYVHRLRKKLEDS-GVRIV-TVRGL 213 Query: 217 GYSID 221 GY ++ Sbjct: 214 GYCLE 218 >gi|183984499|ref|YP_001852790.1| two component response transcriptional regulatory protein MprA [Mycobacterium marinum M] gi|183177825|gb|ACC42935.1| mycobacterial persistence regulator MprA [Mycobacterium marinum M] Length = 232 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 19/220 (8%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R+L +GY DGV +LE + +S R D ++ + LE+ R + Sbjct: 20 RSLSFNGYTVELAHDGV-----EALE----MIASDRPDALVLDVMM--PRLDGLEVCRQL 68 Query: 68 RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R+ +P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR K ++ A Sbjct: 69 RSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKPEDDEA 128 Query: 127 ETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 FSD V EV L R E +LE L+AN + + +++I ++G Sbjct: 129 ADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRILEEVWG- 187 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD N +E ++ LR+K + + + R +GY + Sbjct: 188 FDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 227 >gi|170698368|ref|ZP_02889442.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170136707|gb|EDT04961.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 261 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 53/191 (27%), Positives = 98/191 (51%), Gaps = 17/191 (8%) Query: 22 DGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGIS 79 +G ++ F+S L+ +++L S D++ ++ L G G+K+L+ R R+ S +P+I + Sbjct: 31 EGYHIDAFHSGLDAQQFL-SEQWADLAILDWDLPGVSGDKLLQKIRS-RSQSIMPVIFQT 88 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG-- 137 + + + D+G DD + KP + +LAR+ A+ RR N + ++F DG Sbjct: 89 VHSAESDIVRILDAGADDYLVKPYDRQVLLARMRALLRRFAPMNVQGR----KMFVDGEC 144 Query: 138 ------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 R V G L +E IL +L + G V + + S ++G +D AV+ V+ Sbjct: 145 ALDQQARSLVVAGVAHKLGTKEFDILWHLARHTGAVVLRQDLMSVVWG-WDAAVQSRSVD 203 Query: 192 SHISKLRKKLR 202 ++S+LR L+ Sbjct: 204 MYVSRLRASLK 214 >gi|109453288|gb|ABG34124.1| PhoP [Salmonella enterica subsp. arizonae] gi|109453290|gb|ABG34125.1| PhoP [Salmonella enterica subsp. arizonae] gi|109453292|gb|ABG34126.1| PhoP [Salmonella enterica subsp. arizonae] gi|109453294|gb|ABG34127.1| PhoP [Salmonella enterica subsp. arizonae] gi|109453296|gb|ABG34128.1| PhoP [Salmonella enterica subsp. arizonae] gi|109453298|gb|ABG34129.1| PhoP [Salmonella enterica subsp. arizonae] gi|109453302|gb|ABG34131.1| PhoP [Salmonella enterica subsp. arizonae] gi|109453306|gb|ABG34133.1| PhoP [Salmonella enterica subsp. arizonae] Length = 213 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 52/212 (24%), Positives = 99/212 (46%), Gaps = 5/212 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ ++ + D++ I+ L E L Sbjct: 4 LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIIDLGL--PDEDGLS 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R+ +P++ ++ Q ++ SG DD V KP H E++AR+ A+ RR Sbjct: 62 LIRRWRSSDVLLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ V E+ L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVINIPPFQVDLSRRELSVNEEIIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E E + ++ + +LRKK++ + D + + Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHDVITT 212 >gi|75762882|ref|ZP_00742694.1| Two-component response regulator vanR [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489629|gb|EAO53033.1| Two-component response regulator vanR [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 180 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121 IR +P+I +S + SG DD ++KP + E++ARV + RR K V Sbjct: 20 IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTSV 79 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N++ E G + V +D R V+G+ L +E ILE L N+G ++ +I+ A++ Sbjct: 80 EHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIYEAVWK 139 Query: 180 -LFDEAVEENVVESHISKLRKKL 201 +F ++ +N V HI+K+R K+ Sbjct: 140 EVFYKS--DNTVMVHITKIRDKI 160 >gi|332992601|gb|AEF02656.1| two component transcriptional regulator [Alteromonas sp. SN2] Length = 237 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 12/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNS--LEFEEWLQSSAREDVSAIEAFLIGKGEK 59 +L+DD A + DG ++E NS LQS ++ + ++ G Sbjct: 8 ILLVDDDAELCALLSEFLQTDGFAVETLNSGDAAVARLLQS---DEFDTVVLDIMMPGMS 64 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +RA Q P++ ++ + + G DD + KP + RE+ AR+ AI RR Sbjct: 65 GLDVLRNVRAKKQTPILMLTGRGDDIDRILGLEMGADDYLAKPCNPRELGARIRAIIRRT 124 Query: 120 KVSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N AE I + S R V PL E L LM G+ + K ++ Sbjct: 125 QNGNAPTQTVVHAELHGIVLDSGARTALVDNTPLPLTGAEFNALSLLMERVGQTITKQEM 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + EA + ++ H+S++R+KL D + S R +GY + Sbjct: 185 TEEVLNRPLEAYDR-AMDVHVSRIRQKLTAVGINDVIKSVRGVGYQM 230 >gi|304391317|ref|ZP_07373261.1| protein PetR [Ahrensia sp. R2A130] gi|303296673|gb|EFL91029.1| protein PetR [Ahrensia sp. R2A130] Length = 246 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 12/170 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE+ + R IR VP++ ++ + + ++G DD + KP RE+L R+ AI Sbjct: 80 GERGTDFTRSIREDLDVPVMMLTALGETDSRIAGLEAGADDYLAKPFSPRELLLRINAIL 139 Query: 117 RRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 +R++ + GP R+ + +GEV L RER I+ + G V + + Sbjct: 140 KRVQTEELPGIEQVMFGPYTFSIPSRELKCKGEVVKLTDREREIMVLFAQSAGDVVPRME 199 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 + D E V+ I++LR+K+ + G +P + + R +GY + Sbjct: 200 LVGE-----DTGANERTVDVQINRLRRKIESDPG-NPNWLQTVRGIGYKL 243 >gi|326790774|ref|YP_004308595.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541538|gb|ADZ83397.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 225 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR + P++ +S + F+ GVDD V KP +E++ RV AI +R KV Sbjct: 65 REIRKFTDTPVLMLSARGEEYDRIHGFEIGVDDYVVKPFSPKELMMRVNAIIKRGKVKEE 124 Query: 125 RAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 A + +V D R + G+ + +E + Y++ NRG +++ + S ++G Sbjct: 125 AASKDVVCFQGLKVDFDARLVSIDGKNVEMTPKEYELFFYMVRNRGIALSRENLISNVWG 184 Query: 180 LFDEAVEENVVESHISKLRKKL 201 +D ++ +++HI LRK L Sbjct: 185 -YDYYGDDRTLDTHIKLLRKSL 205 >gi|302873819|ref|YP_003842452.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307689939|ref|ZP_07632385.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302576676|gb|ADL50688.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 218 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 67/130 (51%), Gaps = 1/130 (0%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 +P+I ++ L ++ +G +D + KP E+LAR+ + RR ++N E + Sbjct: 72 NIPVIFLTAKNGLADKVNGLKAGAEDYIVKPFETVELLARIEVVLRRYSKNSNCIEFKSL 131 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 +++ D R + E L +E ++ L+ N+ +++ + I+G ++ E ++ Sbjct: 132 QIYEDKRIIKKDEETIELTLKEFELMLLLVKNKNIALSREYLLEKIWG-YEYMGETRTID 190 Query: 192 SHISKLRKKL 201 +HI K+RKKL Sbjct: 191 THIQKVRKKL 200 >gi|121535008|ref|ZP_01666826.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121306421|gb|EAX47345.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 231 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 11/143 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125 IR S VP+I ++ + + G DD V KP +E+LAR+ AI+RRL+ ++ R Sbjct: 66 IRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQPASRRD 125 Query: 126 -----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + R + G L E ++LE +A+ G+ ++ Q+ + Sbjct: 126 GGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLIEKVQ-- 183 Query: 181 FDEAVE--ENVVESHISKLRKKL 201 D A E E V+SHI LRKKL Sbjct: 184 -DYAFEGYERTVDSHIKNLRKKL 205 >gi|117929039|ref|YP_873590.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649502|gb|ABK53604.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 245 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 24/173 (13%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R +R S VP+I ++ + ++G DD V KP +E+ AR+ A+ RR Sbjct: 79 ECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRR--- 135 Query: 122 SNNRAETGPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAKTQ 172 +R+ GP D +D E++ GE L R E R+L L + + ++ Q Sbjct: 136 --SRSAGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQ 193 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSI 220 + ++G +D + +V+ H+ +LR K+ DP + R LGY I Sbjct: 194 LLERVWG-YDYFGDGRIVDVHVRRLRTKIEE----DPAHPRILVTVRGLGYKI 241 >gi|299538456|ref|ZP_07051739.1| response regulator protein [Lysinibacillus fusiformis ZC1] gi|298726043|gb|EFI66635.1| response regulator protein [Lysinibacillus fusiformis ZC1] Length = 233 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 13/186 (6%) Query: 27 EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF LE EE LQ + V I L+ +++ +R +++P+I ++ Sbjct: 26 EGFQVLEACDGEEGLQLVKKHKVHLIVLDLMMPKVDGIKMCMKVREVAEMPIIMLTAKSQ 85 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVS------NNRAETGPIRVFSD 136 + G DD V KP + E++AR+ + RR LK+S E G +R+ + Sbjct: 86 DMDKIGGLTIGADDYVTKPFNPLELIARIKSQLRRYLKMSGLHSSNKEELEVGDLRINTA 145 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHIS 195 + V E L RE ILE L++N G ++ QI+ ++ +EA + EN V HI Sbjct: 146 THEVFVNNERVKLTPREFAILELLVSNPGIVMSAEQIYEKVWK--EEAFQSENTVMVHIR 203 Query: 196 KLRKKL 201 K+R+++ Sbjct: 204 KIRERI 209 >gi|254292390|ref|YP_003058413.1| transcriptional regulator [Hirschia baltica ATCC 49814] gi|254040921|gb|ACT57716.1| two component transcriptional regulator, winged helix family [Hirschia baltica ATCC 49814] Length = 228 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 73/140 (52%), Gaps = 4/140 (2%) Query: 65 RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 +++R H +VP+I ++ S + DSG +D V KP +LARV A R + S Sbjct: 69 KLMRKHGLRVPVIMLTGQDSDSDMVLGLDSGANDYVAKPFKFTVLLARVRAHLRTFEQSE 128 Query: 124 NRA-ETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + GP + + G+ L +E IL+YL GK VA+ ++ S ++G + Sbjct: 129 DATFKVGPYEFRPSMKSLTDEAGKKIRLTEKETNILKYLYRAEGKAVAREELLSEVWG-Y 187 Query: 182 DEAVEENVVESHISKLRKKL 201 + V + +E+HI +LR+K+ Sbjct: 188 NANVTTHTLETHIYRLRQKI 207 >gi|269926186|ref|YP_003322809.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269789846|gb|ACZ41987.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 238 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 7/152 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NN 124 +RA+S VP+I ++ + + G DD + KP RE++AR+ A+ RR + N Sbjct: 81 LRANSSVPIIMLTARGQDADIVHGLELGADDYITKPYSPRELIARLRALARRSNNASGNQ 140 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 R GP ++ + +GE+ L + + + Y++ ++G+ + + ++G + A Sbjct: 141 RIIAGPFQLDLQHMEVRYKGELIRLTKLQFELFRYMVMHQGEVLPTEDLMRNVWG-YSVA 199 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 ++++V++HI LR+++ DP K L Sbjct: 200 ADDSLVKTHIYYLRQRIEE----DPAHPKHIL 227 >gi|254518278|ref|ZP_05130334.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] gi|226912027|gb|EEH97228.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] Length = 229 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 15/185 (8%) Query: 29 FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88 F + + ++ L+ E ++ L+ G +L + IR+ S +P+I IS + Sbjct: 29 FKAYDSDKALEILNLEKINLAIMDLMMPGTDGYDLIKKIRSTSNIPIIIISAKCENHDKV 88 Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQG- 144 D G DD + KP E++ARV A RR L + +N R +D + Sbjct: 89 IGLDIGADDYITKPFDPLELIARVNAQLRRCYLLNLEDNNENIIKSRDLILDKDKIIVTK 148 Query: 145 ---EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG---LFDEAVEENVVESHISKLR 198 EVF L +E ++LE M N+ K + K +IF I+ L+D +NV+ HIS LR Sbjct: 149 GGKEVF-LTLKEFKLLELFMENKNKVLTKQRIFENIWKEEYLYD----DNVIMVHISNLR 203 Query: 199 KKLRN 203 K+ + Sbjct: 204 DKIED 208 >gi|220935638|ref|YP_002514537.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996948|gb|ACL73550.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7] Length = 216 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 9/134 (6%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 VP+I ++ + ++GVDD V KP RE++AR+ A+ RR N E P+ Sbjct: 82 VPIIMLTARGEEDDRVGGLEAGVDDYVTKPFSPRELVARIKAVMRRTVPEN---EDKPLE 138 Query: 133 VFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 V DP V G + E R+L++ M + + +++Q+ ++G + VEE Sbjct: 139 VDGLTLDPGSHRASVDGNALEMGPTEFRLLQFFMTHPERVYSRSQLLDRVWG-RNTYVEE 197 Query: 188 NVVESHISKLRKKL 201 V+ HI +LRK L Sbjct: 198 RTVDVHILRLRKAL 211 >gi|218682120|ref|ZP_03529721.1| putative phosphate regulon two-component regulator transcriptional regulatory protein [Rhizobium etli CIAT 894] Length = 227 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + +G DD V KP E++ARV A+ R Sbjct: 62 IELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLR 121 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + V + + G I + + + L E R+LE+LM++ G+ +++Q+ Sbjct: 122 RARPEVLSTVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK L D + + R GYS++ Sbjct: 182 GVWG-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226 >gi|124514958|gb|EAY56469.1| putative two component transcriptional regulator, winged helix family [Leptospirillum rubarum] gi|206603908|gb|EDZ40388.1| Putative two component transcriptional regulator, winged helix family [Leptospirillum sp. Group II '5-way CG'] Length = 253 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 13/163 (7%) Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGV-DDVVNKPIHHREILARVAAIY 116 LE+ R+IR+ + P++ +S + G DD + KP + RE L R+ + Sbjct: 72 LEICRVIRSSPRGQKTPILALSGPEGADLKIQTLTEGAADDFLEKPFNPREFLVRIGVLL 131 Query: 117 RRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR + R GP+ SD + + G+ L E RI+ YL+ ++G + K + Sbjct: 132 RRYYREEFRGLRFVFGPLTFDSDRMELRLSGKEILLTPIEYRIMHYLILHQGFLIRKEDL 191 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 +A++ D VEE+ ++ HI +RKKL DP + RF+ Sbjct: 192 SAALWSP-DAMVEEDNLKVHICSIRKKLG-----DPAKASRFI 228 >gi|312863560|ref|ZP_07723798.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] gi|322516479|ref|ZP_08069398.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|311101096|gb|EFQ59301.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] gi|322124998|gb|EFX96410.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 227 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 14/204 (6%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 I+D +++ LF ++ ++ ++ E E QS D+ ++ L GKG + E+ Sbjct: 7 IEDNEDIQNILFNLFSEEHDIIQAYSGTEGELVFQSQEI-DLVLLDIMLPGKGGE--EVL 63 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 + IR S VP+I ++ + G +D + KP E+ ARV+ R ++ Sbjct: 64 KFIRQRSSVPVIMLTALGDKHLISQYLLDGANDYIVKPFDLEEVYARVSVQLREHSKGSD 123 Query: 125 RA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R + I + SD + QG+V L ++E +I L+ N K K ++ ++ Sbjct: 124 RPDNIYQVKNITINSDSFEVSCQGKVIRLGKKEFQIFHTLLQNPKKIFTKDDLYETVW-- 181 Query: 181 FDEA---VEENVVESHISKLRKKL 201 EA +N + + +S LRKKL Sbjct: 182 --EAPYLSCDNTLNAQLSNLRKKL 203 >gi|310641219|ref|YP_003945977.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309246169|gb|ADO55736.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 243 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 19/175 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 L R+ P+I ++ + SG DD + KP E+LARV A+ RR Sbjct: 65 LSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRTSGG 124 Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + ++ + G + ++ + + + G+ L +E +L YL G + + Sbjct: 125 DEGVLSEQKDGSKIQLGELEIYPEKYEVILGGQSISLRPKEFEVLLYLSRKPGVVLTRDD 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSIDWN 223 + +A++G FD + V+ H+S LRKKL DP +DS R +GY + N Sbjct: 185 LMNAVWG-FDYIGGQRTVDVHVSSLRKKLE----LDPDSVHIDSIRGVGYKLVVN 234 >gi|296187493|ref|ZP_06855888.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|296048015|gb|EFG87454.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 225 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 10/152 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G KV E IR S VP+I ++ Q L FD G D V KP + ++A+ A+ Sbjct: 61 GFKVCEC---IRKISNVPIIMLTAKTEEQDILQGFDEGTDAYVTKPFSPKVLVAKANALL 117 Query: 117 RRL--KVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R+ K++ N ++ G I F+ G + V L +E +L++L+ N+G ++K Sbjct: 118 NRVDNKLNANDNIFSKDGLIIDFNSG-EVSVDNSKIVLTHKEYDLLKFLIQNKGIILSKD 176 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 I ++G +D + +++HI +LR+KL N Sbjct: 177 IILDKVWG-YDYFGDPRTIDTHIRRLRQKLGN 207 >gi|90414906|ref|ZP_01222870.1| transcriptional regulatory protein CpxR [Photobacterium profundum 3TCK] gi|90323962|gb|EAS40558.1| transcriptional regulatory protein CpxR [Photobacterium profundum 3TCK] Length = 231 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 99/216 (45%), Gaps = 28/216 (12%) Query: 22 DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------KGEKVLELPRIIRAHSQVPL 75 D + +EGF+ +E ++ A+ D S I+ L+ G ++L R +R P+ Sbjct: 19 DILEMEGFDIVEANNGIEGLAKIDTS-IDLILLDVMMPKMNGTQML---RKLRESFATPV 74 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP----- 130 + ++ + + G DD + KP RE+LAR+ AI RR +++ N T Sbjct: 75 LMLTAKGEEIDRVLGLELGADDYLPKPFSDRELLARIRAILRRTQLTENNLRTNEPECLS 134 Query: 131 ---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDE 183 I ++ ++ GE + E +L YL+ + GK +AK ++ + G FD Sbjct: 135 YQDIDIYPGRQEVFCLGESIEMTGTELALLSYLIQHPGKIIAKNELSMEVLGKRLAQFDR 194 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 A ++ H+S LRKKL + P + + R GY Sbjct: 195 A-----IDMHVSNLRKKLPERADGKPRIKTLRGKGY 225 >gi|11321503|gb|AAG34188.1|AF321122_7 Sim1 [Streptomyces antibioticus] gi|16224023|gb|AAL15604.1|AF322256_25 Sim1 [Streptomyces antibioticus] Length = 251 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 16/172 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IRA S VP+I +S + G DD + P R+++AR+ A+ RR + Sbjct: 72 FEVCRAIRAVSHVPIIVVSARDDELDQILSLKLGADDYIVWPCGMRQLVARMEALIRRAR 131 Query: 121 -------VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 V AE G P+R+ R G PL R+E +L L + G+ Sbjct: 132 NAWESWGVPLASAEAGVRQFGPVRIDLQRRSVTRDGHEVPLTRKEFDMLALLATDPGRVF 191 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + QI ++G D A + + H++ +RKKLR + V++ R +G+ + Sbjct: 192 TREQIMFEVWG-HDGAGDTRTLGVHVTGIRKKLRMP---ELVETVRGVGFRL 239 >gi|330957583|gb|EGH57843.1| DNA-binding response regulator QseB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 220 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 24/218 (11%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL +GY + +DG+S ++L E + + ++ F +L R +R Sbjct: 19 ALNNEGYTLDWLEDGLS--ALHALRSEPFDLLLLDLGLPRMDGF---------DLLRQLR 67 Query: 69 AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 A +P++ ++ + D+G DD + KP E+ ARV A+ RR S RA Sbjct: 68 AEELALPVLILTARDGTADRIAGLDAGADDYLVKPFDVDELKARVRALLRR---SQGRAQ 124 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E I + + QG P+ E ++L LM GK V + ++ + +YG + + Sbjct: 125 PLLEHAGISLDPASQQVTFQGNEVPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG-WQD 183 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE N +E I LRKKL +L + + R +GY ++ Sbjct: 184 KVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217 >gi|319792963|ref|YP_004154603.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315595426|gb|ADU36492.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 221 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L R+ ++P + ++ SL + ++G DD + KP E+ AR+ A+ RR + V Sbjct: 63 LQRLRERDQRLPALILTARDSLNERVASLNAGADDFLAKPFALAELEARLHALVRRARGV 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + R GP+ S R + GE L RE+ +L L+ G+ ++K QI ++ Sbjct: 123 EHPRLACGPLVYDSARRHFVLNGEALALSPREQAVLRALVQRSGEPLSKQQILERVFS-D 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE V VE + +LRK+L + G V + R LGY ++ Sbjct: 182 DEEVHPEAVEVFVYRLRKRL-DGTGVRIV-TLRGLGYVLE 219 >gi|314965527|gb|EFT09626.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL082PA2] gi|315094280|gb|EFT66256.1| putative KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL060PA1] gi|327329071|gb|EGE70831.1| KDP operon transcriptional regulatory protein KdpE [Propionibacterium acnes HL103PA1] Length = 227 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 12/151 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G KV+E +R S P++ IS ++ D+G DD V KP E+LAR+ + Sbjct: 59 GVKVIE---AVRGWSSAPILVISGRSGSAEKVEALDAGADDYVTKPFSMDELLARIRVLT 115 Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR + + + PI F G L E R+LE L+ N G+ V + Sbjct: 116 RR--IGQDEVDEEPIVAFGSVWVDLAAHTVTRDGANVRLTPTEWRVLELLIRNEGRLVTR 173 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + S ++G + + + +IS+LRKKL Sbjct: 174 QTMLSQVWG-SEHVADTGYLRLYISQLRKKL 203 >gi|299066755|emb|CBJ37949.1| putative response regulator, CheY family [Ralstonia solanacearum CMR15] Length = 230 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 68/130 (52%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPI 131 +P++ ++ + +++ + + G DD + KP E+ AR A+ RR + + GP+ Sbjct: 73 LPVMILTAHGAVEERVRGLNLGADDYLTKPFDLTEVEARARALIRRSHGHERTQLQCGPL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 ++GE L RER +LE L+ G+ V K I I+G+ +E+V + +E Sbjct: 133 HYDGTSGAFTLRGEALALTGRERAVLEVLVLRDGRAVNKAAISEKIFGI-NESVNADAIE 191 Query: 192 SHISKLRKKL 201 ++ +LRKKL Sbjct: 192 IYVHRLRKKL 201 >gi|229074320|ref|ZP_04207360.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18] gi|229094989|ref|ZP_04225986.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29] gi|229113942|ref|ZP_04243369.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3] gi|228669516|gb|EEL24931.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3] gi|228688433|gb|EEL42314.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29] gi|228708807|gb|EEL60940.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18] Length = 237 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 15/162 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 63 IEVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122 Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V SNN + F + E L +E +L++ +N G+ KTQ Sbjct: 123 VLGSNNTVQEKTTLAFKGLTINLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213 +F ++ D +E +N V HI KLRKK+ DP + K Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218 >gi|221218319|ref|YP_002524346.1| two component transcriptional regulator, winged-helix family [Rhodobacter sphaeroides KD131] gi|221163346|gb|ACM04312.1| two component transcriptional regulator, winged-helix family [Rhodobacter sphaeroides KD131] Length = 229 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 6/150 (4%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGP 130 P+I ++ + +D ++G DD + KP E+ AR+ ++ RR + N G Sbjct: 82 STPVIILTALDQITERIDGLNAGADDYLVKPFDLAELSARIGSVARRYGGNPNPVVRLGA 141 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 V R +G PL RE +LE +A + ++K Q+ ++ F+ +E N + Sbjct: 142 FEVDLAARTIRREGRPVPLTAREWVLLEAFLARPNQVLSKAQLEERLWS-FEAEIESNAI 200 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++S+LR+KL + + +++ R LGY + Sbjct: 201 EVYVSRLRRKLDHSV----IETVRGLGYRL 226 >gi|86356168|ref|YP_468060.1| phosphate regulon, two-component response regulator protein [Rhizobium etli CFN 42] gi|190890217|ref|YP_001976759.1| phosphate regulon, two-component response regulator protein [Rhizobium etli CIAT 652] gi|86280270|gb|ABC89333.1| phosphate regulon, two-component response regulator protein [Rhizobium etli CFN 42] gi|190695496|gb|ACE89581.1| phosphate regulon, two-component response regulator protein [Rhizobium etli CIAT 652] gi|327192727|gb|EGE59663.1| phosphate regulon, two-component response regulator protein [Rhizobium etli CNPAF512] Length = 227 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + +G DD V KP E++ARV A+ R Sbjct: 62 IELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLR 121 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + V ++ + G I + + + L E R+LE+LM++ G+ +++Q+ Sbjct: 122 RARPEVLSSVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK L D + + R GYS++ Sbjct: 182 GVWG-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226 >gi|15805807|ref|NP_294505.1| response regulator [Deinococcus radiodurans R1] gi|6458493|gb|AAF10359.1|AE001933_3 response regulator, OmpR/PhoB family [Deinococcus radiodurans R1] Length = 222 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/212 (23%), Positives = 98/212 (46%), Gaps = 15/212 (7%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLELPRIIR 68 L + GY + DG++ G +SARE+ + +G + E+ R +R Sbjct: 22 LEQAGYRVITAPDGIT--GL----------TSARENTPDLVILDLGLPDFDGAEVARRLR 69 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 S VP+I ++ ++ ++ ++G DD + KP H E++ARV + R + Sbjct: 70 KTSSVPIIILTAMDAIDRKVNLLEAGADDYMTKPFHPEELVARV-KVQLRHQQHGEVITI 128 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + R G L +E +L +L G+ ++ +I ++ + N Sbjct: 129 GALEIHPQKRLCSYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVWN-GELPSNSN 187 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 VV+ H++ +R KLR+ G+ + + R +GY++ Sbjct: 188 VVDVHMANMRAKLRDLDGYGVIRTVRGIGYAL 219 >gi|23012247|ref|ZP_00052379.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 228 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 6/149 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPI 131 P++ ++ ++ + D G DD + KP E+ AR+ A+ RR + E G I Sbjct: 81 TPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRRAAGRATASLEHGGI 140 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 R+ V G P+ RRE +L LM +K ++ +YG + E +E N VE Sbjct: 141 RLDLGSLTVTVDGAQIPVSRREFMVLAALMERPSVLRSKAELEDRLYG-WQEEIESNAVE 199 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 H+ LR K+G +++ R LGY + Sbjct: 200 VHV----HNLRAKIGKHAIETVRGLGYRM 224 >gi|325845377|ref|ZP_08168676.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Turicibacter sp. HGF1] gi|325488592|gb|EGC91002.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Turicibacter sp. HGF1] Length = 230 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 67/118 (56%), Gaps = 6/118 (5%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKV-----SNNRAETGPIRVFSDGRDPEVQGE 145 D G DD + KP RE+++++ AI RR +V + N G I++ + + V G+ Sbjct: 93 LDFGADDYMTKPFSSREVVSKIKAIIRRKEVLSSEKNKNYLGYGSIKLDNSRFEVLVNGQ 152 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 V +E +LE+L+ ++G+ +++ + ++G F+ + +V+ HI K+R+KL++ Sbjct: 153 VIDFTLKEYELLEFLIQHKGQAMSRDVLLDRLWG-FEYDGDTRIVDVHIFKIREKLKD 209 >gi|299067888|emb|CBJ39101.1| putative response regulator, CheY family [Ralstonia solanacearum CMR15] Length = 232 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ + +P++ ++ S+ + D G DD + KP E+ ARV A+ RR Sbjct: 66 LKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGTGG 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 GP+ GR ++ ++ L RE +LE L++ G+ V+K Q+ + G + Sbjct: 126 GATLVRHGPLAFDQVGRIAYIRDQMVELSARELGLLEILLSRAGRLVSKEQLVDHLCG-W 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E V N +E ++ +LRKK+ ++ + + R LGY ++ Sbjct: 185 GEEVSNNAIEVYVHRLRKKI--EVDGIRIATVRGLGYCLE 222 >gi|290352191|dbj|BAI78806.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDCGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|224368969|ref|YP_002603133.1| two component transcriptional regulator (Winged helix family protein) [Desulfobacterium autotrophicum HRM2] gi|223691686|gb|ACN14969.1| two component transcriptional regulator (Winged helix family protein) [Desulfobacterium autotrophicum HRM2] Length = 228 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 100/217 (46%), Gaps = 13/217 (5%) Query: 13 DGYIALFGDDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 D IA F G+S GF +++ ++ L + E+ I ++ + L + +RA Sbjct: 9 DVKIADFVIKGLSAAGFAVDHAVNGQDGLHMACFEENDLIVVDVMLPCLDGISLIKTLRA 68 Query: 70 HS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRA 126 P+I +S + + ++G DD + KP E+LAR+ A+ RR V Sbjct: 69 RGFNTPVIVLSARDRVDDRVRGLEAGADDYLTKPFAFSELLARIQALIRRAGGVVDPTTL 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 G + + R+ G V L E +LEYLM N+ + V+KT I ++ FD Sbjct: 129 SYGELVMDLMKREVRRDGRVVELQPLEFSLLEYLMRNQERVVSKTMIMEHVWNYNFDPMT 188 Query: 186 EENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 NVVE+ + +LR K+ GF P + + R GY + Sbjct: 189 --NVVEARVCRLRDKIDK--GFHPKLIHTVRGAGYVL 221 >gi|254477299|ref|ZP_05090685.1| two-component response regulator [Ruegeria sp. R11] gi|214031542|gb|EEB72377.1| two-component response regulator [Ruegeria sp. R11] Length = 225 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 5/154 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A P+I ++ +++ ++ ++G DD ++KP E+LAR+ A+ RR + + T Sbjct: 69 ARINTPMILLTALGAVEDRVEGLEAGADDYLSKPFAMSELLARITALSRRGRGEGDAPAT 128 Query: 129 G----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + + + G PL +E R+LE LM ++G+ + + ++ + E Sbjct: 129 KLSHRGLELDLLSQTCTCHGTAVPLNPKEFRLLEVLMRSKGRIQTRAMLLERVWDINFEP 188 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +VVE+H+S+LR K+ + + + R GY Sbjct: 189 -STSVVETHMSRLRNKIEKPFDAEYIRTIRGSGY 221 >gi|218898283|ref|YP_002446694.1| regulatory protein VanR [Bacillus cereus G9842] gi|218544757|gb|ACK97151.1| regulatory protein VanR [Bacillus cereus G9842] Length = 228 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 77/143 (53%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121 IR +P+I +S + SG DD ++KP + E++ARV + RR K V Sbjct: 68 IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTSV 127 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N++ E G + V +D R V+G+ L +E ILE L N+G ++ +I+ A++ Sbjct: 128 EHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIYEAVWK 187 Query: 180 -LFDEAVEENVVESHISKLRKKL 201 +F ++ +N + HI+K+R K+ Sbjct: 188 EVFYKS--DNTIMVHITKIRDKI 208 >gi|330812221|ref|YP_004356683.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380329|gb|AEA71679.1| putative response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 226 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 25/230 (10%) Query: 2 FVLIDDRALVKDGYI-ALFGDDGVSLEGFNSLEFEEWL---------QSSAREDVSAIEA 51 ++++D A + D + AL G EGF++ WL Q SA D+ ++ Sbjct: 4 ILIVEDEAAIADTLVFALQG------EGFDT----TWLSLGAAALEHQKSAPADLIILDV 53 Query: 52 FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L E + +R S VP+I ++ + + G DD V KP RE+ AR Sbjct: 54 GL--PDISGFETCKNLRRFSDVPVIFLTARDGEIDRVVGLEIGADDYVVKPFSPREVAAR 111 Query: 112 VAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 V AI +R+ + T +V +D +G+ L R E R+L L+ + ++ Sbjct: 112 VRAILKRVAPRPAAESSTALFQVDADRVQINYRGKPLNLTRHEFRLLNCLLEQPERVFSR 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 Q+ A+ G+ +A E ++SHI +R KLR + +P+ + R LGYS Sbjct: 172 EQLLDAL-GVASDAGYERSIDSHIKSVRAKLRLVRAEAEPIQTHRGLGYS 220 >gi|302870967|ref|YP_003839603.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302573826|gb|ADL41617.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 224 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 85/169 (50%), Gaps = 17/169 (10%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 + L ++IR Q P++ ++ S++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 60 INLLKLIRLKGIQTPVLCLTAKDSIEDRVIGLDAGADDYLVKPFSFDELLARIRALLRRY 119 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +KV + +T +V G++ L +E ILEYL N+G+ + ++ Sbjct: 120 AQTREPIIKVKDLVIDTNSHKVTR-------AGKLIELTSKEYSILEYLARNKGRVLTRS 172 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI ++ +D N+V+ +I LR+K+ + + + R +GY + Sbjct: 173 QIAEHVWN-YDFEGTSNIVDVYIRYLRRKIDDGFPEKLIYTIRGVGYML 220 >gi|289167181|ref|YP_003445448.1| response regulator [Streptococcus mitis B6] gi|288906746|emb|CBJ21580.1| response regulator [Streptococcus mitis B6] Length = 228 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 79/145 (54%), Gaps = 4/145 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117 LE+ ++IR VP+ I+ + + ++G DD + KP +E+LARV R Sbjct: 60 LEICQMIREQITVPICFITAKDMDEDLVAGINAGADDYIMKPFSMQELLARVKMHLRREE 119 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R+K + ++ + G + +++D ++ V + L RRE I+ L +N K + +I++ + Sbjct: 120 RIKGNVHQIKIGKLILYTDSKELFVNDDKIALTRREFDIVNLLASNPSKIYSIEEIYNYL 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202 Y EA+ +V E +I ++R+KL+ Sbjct: 180 YPQSSEALLRSVSE-YIYQIRQKLK 203 >gi|225868204|ref|YP_002744152.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. zooepidemicus] gi|225870859|ref|YP_002746806.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. equi 4047] gi|225700263|emb|CAW94500.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. equi 4047] gi|225701480|emb|CAW98631.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. zooepidemicus] Length = 240 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 78/153 (50%), Gaps = 11/153 (7%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ + +RA S+ P++ +S + + G DD V KP RE+LARV AI RR Sbjct: 62 IEVCKRLRAKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRT 121 Query: 120 --KVSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 ++S + E +R++ + + E+ PL +E +L YLM + + + Sbjct: 122 EAEISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ I+G +D E +V+ HI KLR+K+ + Sbjct: 182 ERLLERIWG-YDFGQETRLVDVHIGKLREKIED 213 >gi|167034724|ref|YP_001669955.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166861212|gb|ABY99619.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 231 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 14/164 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G++VL R +R S VP++ +S S +D D G +D V KP +E LARV A+ Sbjct: 63 GQQVL---RELREWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALL 119 Query: 117 RRLKVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R++ + A GP+ V R + G L R+E +L L + G+ + + Q+ Sbjct: 120 RQVPQAGGSEVAASFGPLTVDFAFRRVTIDGVEVALTRKEYALLALLAGHPGRVITQQQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216 I+G +V ++H ++ LR KLG DP + RF+ Sbjct: 180 LKDIWG------PTHVEDTHYLRIVVGHLRQKLGDDPT-APRFI 216 >gi|283784940|ref|YP_003364805.1| two-component response regulator [Citrobacter rodentium ICC168] gi|282948394|emb|CBG87982.1| two-component response regulator [Citrobacter rodentium ICC168] Length = 223 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 102/218 (46%), Gaps = 5/218 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ + ++ + D++ ++ L E L Sbjct: 4 LVVEDNALLRHHLKVQLQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGL--PDEDGLS 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R R + +P++ ++ Q ++ +G DD V KP H E++AR+ A+ RR Sbjct: 62 LIRRWRGNDVSLPVLVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVVARMQALMRRNSG 121 Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ P +V R+ + EV L E I+E L+ N GK V+K + +Y Sbjct: 122 HASQIISIPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDALMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E E + ++ + +LRKK++ + D + + R GY Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPDDVITTVRGQGY 218 >gi|239904794|ref|YP_002951532.1| transcriptional regulatory protein CpxR [Desulfovibrio magneticus RS-1] gi|239794657|dbj|BAH73646.1| transcriptional regulatory protein CpxR [Desulfovibrio magneticus RS-1] Length = 231 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 9/165 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA SQ+P++ ++ + + G DD + KP + RE++AR+ AI RR + Sbjct: 62 EVLRRIRAASQIPVLMLTARGEDVDRIVGLEIGADDYLPKPFNSRELVARIRAILRRTET 121 Query: 122 SN-NRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ G SD GR G+ L E ILE LM GK V++ ++ Sbjct: 122 GEPTPSKAGESISISDVVINVGGRSVLCNGKPLDLTSIEYSILEVLMRMAGKVVSREELA 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218 G A E + ++ HI LRKKL + L + + + R +GY Sbjct: 182 EKAMGRKHSAYERS-LDVHICSLRKKLGTHSLYGERIKTVRNMGY 225 >gi|228952982|ref|ZP_04115044.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806703|gb|EEM53260.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 224 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 5/162 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +RA P+I ++ S+ + DSG DD + KP E+LAR+ I+RR + Sbjct: 61 LEVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREE 120 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N+ + +++ + R E L +E +L M N + + + + Sbjct: 121 HIENKQVSFLTFKDLQLQIESRTITKGDEEIELTNKEFELLLMFMKNINRVLTRDVLLDQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G +D VE N+V+ ++ LR KL + + + + R GY Sbjct: 181 VWG-YDAIVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGY 221 >gi|225872896|ref|YP_002754353.1| TcrA [Acidobacterium capsulatum ATCC 51196] gi|225793949|gb|ACO34039.1| TcrA [Acidobacterium capsulatum ATCC 51196] Length = 224 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 14/200 (7%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPR 65 +R L +DG+ DG +G + E+ D + ++ L G G +VLE R Sbjct: 17 ERGLREDGHRVSVTHDGA--DGARRMLSGEF-------DAALLDILLPGMSGLEVLE--R 65 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNN 124 + H + P++ ++ ++ L+ FD G DD + KP +LARV AI RR++ + Sbjct: 66 VRAQHCKTPILMLTAVDAVPKVLEAFDLGADDYLVKPFLLEILLARVGAIARRVQPQAPQ 125 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 G + + R G L R++ +LE LM G ++ ++ A +G A Sbjct: 126 MLHAGGLTLDRQRRVVARDGRQIALTRKQVDLLEVLMRRSGLVTSREELIEAGWG-SASA 184 Query: 185 VEENVVESHISKLRKKLRNK 204 V+EN ++ +I LR KL ++ Sbjct: 185 VKENTLDVYIHSLRTKLGDR 204 >gi|261340008|ref|ZP_05967866.1| DNA-binding response regulator BaeS [Enterobacter cancerogenus ATCC 35316] gi|288317926|gb|EFC56864.1| DNA-binding response regulator BaeS [Enterobacter cancerogenus ATCC 35316] Length = 234 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 15/165 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S VP+I +S L G DD V KP + E++ARV A+ RR K + +A Sbjct: 70 LRQESSVPVIMVSALDQDVDKLMGLRLGADDYVIKPFNPSEVVARVEAVLRRTKPTIQQA 129 Query: 127 ETGPIR-----VFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 P+R V+ D PEV V L E ++L YL+ K ++ ++ + Sbjct: 130 GAAPLRTSFLTVYPDDFYVEVTVGPEVVSPV--LTTTEFKLLTYLVRYPRKVCSREELLN 187 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A D + V+SH+SKLRKKL + +S R +GY + Sbjct: 188 ACLPEGDTL--DRTVDSHMSKLRKKLELAGLYGVPESIRGMGYRL 230 >gi|160873182|ref|YP_001552498.1| two component transcriptional regulator [Shewanella baltica OS195] gi|160858704|gb|ABX47238.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|315265409|gb|ADT92262.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 229 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 39/168 (23%), Positives = 86/168 (51%), Gaps = 14/168 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 + L + +R H +VP++ ++ + + ++G +D ++KP RE++AR+ + R L Sbjct: 62 ISLLQTLRQHDKVPVLILTARDQEEEKIRLLEAGANDYLSKPFGIRELIARIKVLVRDLV 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + G +++ ++ + L ++E ++E LMA+ G+ V +T++ I Sbjct: 122 DEPALSDVLQFGALKLQKSTHQLWLEQQEIALTKKEFALIETLMAHPGQLVKQTELLRDI 181 Query: 178 YGLFDEAVEENVVESH-----ISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G E + +SH +S+LRKKL + + ++ LGY + Sbjct: 182 WG------ETHTEDSHYLRILVSQLRKKLNDSTEQQLIKTEAGLGYRL 223 >gi|83309288|ref|YP_419552.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82944129|dbj|BAE48993.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 223 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 71/132 (53%), Gaps = 6/132 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149 F++G DD V KP E++ RV A+ RR ++ GP+R+ + G G L Sbjct: 91 FNAGADDYVTKPFEMEEVVTRVRALIRRAAGHASPEITCGPLRIDTVGGRVSRAGLPIAL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E RIL YL ++G+ V+++++ +Y D + NV++ ++++R+ KLG D Sbjct: 151 TAQEFRILSYLAHHQGRVVSRSELVEHVYD-RDADPDSNVLDVLVARIRR----KLGVDV 205 Query: 210 VDSKRFLGYSID 221 + + R G+ ++ Sbjct: 206 IHTLRGQGWRME 217 >gi|56965856|ref|YP_177590.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56912102|dbj|BAD66630.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 236 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 84/166 (50%), Gaps = 9/166 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R +P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 62 MEVCREVRKQYDLPIIMLTAKDSEIDKVLGLELGADDYVIKPFSTRELLARVKANLRRQQ 121 Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 V+ + A T G + + + + +GE L RE ++ YL + G+ + + + Sbjct: 122 VAADDAPTTQKEITIGELSILPEAYQVKKRGEPVDLTHREFELIHYLGKHLGQVMTREHL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 A++G +D + V+ + +LR+K+ + + + + ++R +GY Sbjct: 182 LQAVWG-YDYFGDVRTVDVTVRRLREKVEDNPSYPNWIMTRRGVGY 226 >gi|88797445|ref|ZP_01113034.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Reinekea sp. MED297] gi|88779617|gb|EAR10803.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Reinekea sp. MED297] Length = 234 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 77/151 (50%), Gaps = 2/151 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ +S SL + F++G DD + KP+ E+ RV A+ R + +++ GP++ Sbjct: 74 TPVLLLSKRGSLNDKITGFNAGADDFLVKPVDIEEVFLRVRALAARRSIISHQLSAGPLK 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + + R + L R+LE L+ + V++ Q+ A++G D+ + N + Sbjct: 134 LDAQRRTCVLNRAPVSLTPITFRLLETLLRDSPNPVSQQQLTRAVWG--DDLPDSNKLRV 191 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 H+ +LR+ L+ + G + + G+++D N Sbjct: 192 HMHRLRQSLKPQGGESLIKTVPGFGFAVDAN 222 >gi|83854912|ref|ZP_00948442.1| two-component response regulator [Sulfitobacter sp. NAS-14.1] gi|83842755|gb|EAP81922.1| two-component response regulator [Sulfitobacter sp. NAS-14.1] Length = 223 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 5/156 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126 A + P++ ++ S+ + ++G DD + KP E+ ARV A+ RR + Sbjct: 69 AGNLTPVLFLTAMGSVDDRISGLNAGGDDYLVKPFAFGELSARVTALARRPQAMEQETVL 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 G + + R G+ L RE +LE+L+ +G+ +T + A++ + FD Sbjct: 129 RAGDLEMQLITRKVTRAGQEIDLLPREFALLEHLLRRKGRVQTRTMLLEAVWDISFDPMT 188 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 NVVE+HIS+LR K+ + + + R GY ID Sbjct: 189 --NVVETHISRLRAKVDKPFDRELIQTVRGAGYRID 222 >gi|332561563|ref|ZP_08415876.1| two component transcriptional regulator, winged-helix family protein [Rhodobacter sphaeroides WS8N] gi|332274065|gb|EGJ19383.1| two component transcriptional regulator, winged-helix family protein [Rhodobacter sphaeroides WS8N] Length = 229 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 75/150 (50%), Gaps = 6/150 (4%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGP 130 P+I ++ + +D ++G DD + KP E+ AR+ ++ RR + N G Sbjct: 82 STPVIILTALDQITERIDGLNAGADDYLVKPFDLAELSARIGSVARRYGGNPNPVVRLGA 141 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 V R +G PL RE +LE +A + ++K Q+ ++ F+ +E N + Sbjct: 142 FEVDLAARTIRREGRPVPLTAREWVLLEAFLARPNQVLSKAQLEERLWS-FEAEIESNAI 200 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++S+LR+KL + + +++ R LGY + Sbjct: 201 EVYVSRLRRKLDHSV----IETVRGLGYRL 226 >gi|323142466|ref|ZP_08077286.1| transcriptional regulatory protein WalR [Phascolarctobacterium sp. YIT 12067] gi|322413043|gb|EFY03942.1| transcriptional regulatory protein WalR [Phascolarctobacterium sp. YIT 12067] Length = 232 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 5/145 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R S VP+I I+ + D G DD V KP E++ARV A+ RRL Sbjct: 63 FEVCRRLRKESMVPIIMITARGEDYDKIMGLDIGADDYVIKPFSAPEVMARVRAVLRRLG 122 Query: 121 VSN-NRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 A+T + + + ++ GE L ++E +L L N K ++ + + Sbjct: 123 AQEPANAQTLSYANLYINLEKYAVQINGEDVALTKKEIELLWTLAKNSTKVFSRDNLLDS 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 I+G +D + V+SHI +LR KL Sbjct: 183 IWG-YDYFGDSRTVDSHIKRLRAKL 206 >gi|308234020|ref|ZP_07664757.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Atopobium vaginae DSM 15829] Length = 246 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 13/168 (7%) Query: 63 LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + R +R+++Q +P+I I+ + + D+G DD + KP E+L+R+ A+ RR Sbjct: 74 ITRTLRSNAQWSHIPIIMITAKTTEMDMIRGLDNGADDYIRKPFSVMELLSRIRALLRRA 133 Query: 120 KVSNNRA--ETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + RV + DP V L +E +L YLM + G + Sbjct: 134 QTPAQMPADKYSVCRVGAIMLDPARHYVCVHDTPVNLTHKEYDLLHYLMLHEGLVFTREV 193 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + A++G FD E V+ HI LR+KL + + V + R +GY + Sbjct: 194 LMQAVWG-FDFEGESRTVDMHIKTLRQKLGDASCY--VHTVRGVGYCV 238 >gi|295707307|ref|YP_003600382.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294804966|gb|ADF42032.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 227 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 103/207 (49%), Gaps = 14/207 (6%) Query: 23 GVSLEGFNSLEFEEWLQ--SSARE---DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIG 77 G++ EGF+ ++ ++ + A+E ++ ++ L G E+ R+++ + +I Sbjct: 25 GLTNEGFDIKATQDGIEGINVAKEFKPHIAIVDVML--PGMDGFEVCRLLKKMGNIAVIM 82 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNRAETGPIRVFSD 136 ++ + + G DD + KP E+LAR+ A I + + GP ++ D Sbjct: 83 LTAKDQVDDRVKGLTIGADDYMVKPFSFEELLARIQARIRNQFPNLLDEVSIGPFKI--D 140 Query: 137 GRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 R E++ + L E +L++L+ N G ++K+ I ++G +D EEN+VE +I Sbjct: 141 DRRKEIKYLNHILDLSPTEYALLKFLVINHGLVLSKSTILDRVWG-YDFGGEENIVEVYI 199 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSID 221 LR+KL++ + + R +GY ID Sbjct: 200 RSLREKLQD-YSRTVIRTLRGVGYRID 225 >gi|291523187|emb|CBK81480.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 225 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 94/192 (48%), Gaps = 13/192 (6%) Query: 38 LQSSAREDV------SAIEAFLIGKGE---KVLELPRIIR-AHSQVPLIGISDYPSLQTT 87 LQ+S EDV S I+ ++G V EL +R +S +PL+ +++ Sbjct: 29 LQASGGEDVLKVLETSYIDFIILGDNLVDLNVYELMGQLRDTYSDMPLMLLAEKKERDGL 88 Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEV 146 + +G D+ + K + E++ R+ A+ RR K + R + G + + D +G+ Sbjct: 89 RKSYMAGADEYLTKNVDEEELVLRIRAVLRRSGKNYDKRLQVGDVILDCDSLSVTRKGDR 148 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 LPR+E +L L++ K +TQ+ I+GL E ++ + H+++LR K R Sbjct: 149 QTLPRKEFWLLYKLLSYPDKIFTRTQLMDEIWGLTTET-SQSTLNVHVNRLRNKFRKYPE 207 Query: 207 FDPVDSKRFLGY 218 FD + + R +GY Sbjct: 208 FD-LKAVRGIGY 218 >gi|255505806|ref|ZP_05348241.3| DNA-binding response regulator MtrA [Bryantella formatexigens DSM 14469] gi|255265751|gb|EET58956.1| DNA-binding response regulator MtrA [Bryantella formatexigens DSM 14469] Length = 236 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 11/208 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ D A G + F + + +E L+ + + + L+ G E Sbjct: 10 LIVDDETMICDSVSAYITKQGYHV--FTAGDGKEALEIFRKYPIMFVILDLMLPGMTGEE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + + IR S+VP+I ++ + L+ D G DD V KP +++ AR+ AI RR Sbjct: 68 ICQAIRRQSRVPVIMLTAKTQEEDVLNGLDIGADDYVTKPFSVKQLYARMEAILRRTGND 127 Query: 119 LKVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 LK + + D EV QGE L E +IL ++ + K ++ + Sbjct: 128 LKPLAEKFSWNDNDLQIDFGHSEVRKQGEALSLTPSEWKILSAMIKHPKKVFSRENLIEL 187 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRN 203 ++G FD + V+++HI LRKKL Sbjct: 188 VFGPDFDSY--DRVIDTHIKNLRKKLET 213 >gi|206976990|ref|ZP_03237891.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962303|ref|YP_002340873.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222098284|ref|YP_002532341.1| two-component response regulator [Bacillus cereus Q1] gi|229141548|ref|ZP_04270082.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|206744795|gb|EDZ56201.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065924|gb|ACJ80174.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221242342|gb|ACM15052.1| Two-component response regulator [Bacillus cereus Q1] gi|228641948|gb|EEK98245.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 229 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 8/152 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ TL F+ G DD V KP +LAR + K++ Sbjct: 64 VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKIT 123 Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I V R V L E IL YLM N+G + + Q+ S Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLIS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 I+G ++ A ++ V SHI LR KL K + Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|56479001|ref|YP_160590.1| DNA-binding response regulator [Aromatoleum aromaticum EbN1] gi|56315044|emb|CAI09689.1| DNA-binding response regulator [Aromatoleum aromaticum EbN1] Length = 219 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 27/224 (12%) Query: 16 IALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFL---IGKGEKVLELPR-----I 66 + L DD EG SL+ E + R+ SA+ A G L LPR + Sbjct: 3 VLLVEDDASLGEGILTSLKPEGYTVDWVRDGSSALHALTHESFGLAVLDLGLPRLDGLEV 62 Query: 67 IR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 +R A + P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR S Sbjct: 63 LRQLRAAENPTPVLVLTARDTIADRIAGLDAGADDYLVKPFDVAELKARLRALLRR---S 119 Query: 123 NNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 NR + + DP Q G+ L R+E +L L+A G+ + + ++ + Sbjct: 120 FNRPQPA-LEYRGITLDPASQLVTWNGQTVSLQRKEFILLHELIAQPGRVLTRDKLQQVL 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 YG +EA E N +E HI LRKK +L + + R +GY +D Sbjct: 179 YGWGEEA-ESNALEVHIHHLRKKFFPEL----IRTVRGVGYLVD 217 >gi|332186432|ref|ZP_08388176.1| response regulator [Sphingomonas sp. S17] gi|332013415|gb|EGI55476.1| response regulator [Sphingomonas sp. S17] Length = 236 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 5/187 (2%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLEL-PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 L+ + RE AI + G L L R+ H +P++ +S + + +G D Sbjct: 50 LELATREAFDAITLDRMLPGLDGLSLVARLRERHITIPVLMLSALSDVDERIAGLRAGGD 109 Query: 97 DVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERR 155 D + KP E+ RV + RR + + G I R +V GE L E R Sbjct: 110 DYLTKPFDFAEMAMRVEVLLRRREQAEAVVLRGGGIECDLVRRTVKVDGEPVRLLHMEFR 169 Query: 156 ILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214 +LE+LM N+G+ + + IF ++G FD N++ HI++LRKK+ P+ + + Sbjct: 170 LLEFLMRNQGEVMTRRIIFERVWGYYFDPGA--NLISVHIARLRKKIDRPDRSSPIQTVK 227 Query: 215 FLGYSID 221 GY D Sbjct: 228 GEGYLFD 234 >gi|307244273|ref|ZP_07526388.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492423|gb|EFM64461.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 223 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 66/137 (48%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S +P+I ++ + + L F+ G D+ + KP + AR+ I+RR + Sbjct: 65 LREFSNIPVIMLTVKNTDENILRGFEFGADEYITKPFSLPILKARIDNIFRRKNTKSRDI 124 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + + G+ L ++E +LE L+ NRG V + +I +++G V Sbjct: 125 VFGDLNLNLKSMTAYLSGDNLDLSKQEFSVLEILLENRGANVIRKRIIDSVWGYDLYEVN 184 Query: 187 ENVVESHISKLRKKLRN 203 +N + I +LR KL N Sbjct: 185 DNTLTVTIKRLRYKLGN 201 >gi|317056207|ref|YP_004104674.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315448476|gb|ADU22040.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 224 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 79/159 (49%), Gaps = 12/159 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124 I+ +P+I +S + L F+ GVDD V KP RE++AR+ A+ R K VS N Sbjct: 67 IKEFKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPRELMARIKAVINRSKTDVSEN 126 Query: 125 RA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + + + G V G L +E +L + + NRG + + QI + ++G + Sbjct: 127 DSGIVNIGGMEIDTFGLTVTVDGTRNELTAKEYALLMFFVNNRGIVLTRDQILNEVWG-Y 185 Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGY 218 D + V+ I K LR+KLG D + + R +GY Sbjct: 186 DSFGVDRTVDWQI----KLLRSKLGSCRDCIKTVRGVGY 220 >gi|300311273|ref|YP_003775365.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300074058|gb|ADJ63457.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 28/207 (13%) Query: 27 EGFNSLE-FEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLI---GISDY 81 +G +LE + W R D+ ++ L G G +VL IR H+ +I ++D Sbjct: 35 DGHQALELYRRW-----RPDLVLLDVMLPGLSGNEVLA---AIRQHASTAVIMVTAVADQ 86 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDP 140 P L +L + G DD V KP H E++ARV A+ RR L+ + A+ +R + DP Sbjct: 87 PRLINSLLY---GADDYVVKPYHPGEVVARVHAVLRRMLRPVSGAAQQAVLRHGALTLDP 143 Query: 141 EV---------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + L R E +L +MA + ++ ++ + + + E VV+ Sbjct: 144 DAALATVDKDGHPQALTLTRTELNLLALMMAAPTRMFSRAELLA--HSQPESDAMERVVD 201 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 +H+ LR+KL + V + R LGY Sbjct: 202 AHLHNLRRKLEQAGIREVVVTVRGLGY 228 >gi|169647646|gb|ACA61821.1| LRA-16 [uncultured bacterium BLR16] Length = 231 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/183 (25%), Positives = 88/183 (48%), Gaps = 7/183 (3%) Query: 28 GFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPSL 84 GF + F + + A + L+ G+ LE+ + IRA S VP+ ++ Sbjct: 29 GFKTTHFPSGIGVVESVKIEAPDLILLDIKLPGKNGLEVCKEIRAFSTVPIFMVTAEIEE 88 Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDPEV 142 L + G DD + KP RE++AR+ A++RR++ TG ++ + Sbjct: 89 IDRLLGLELGADDYICKPFSPREVVARIKALFRRMQQIGVPEPTRTG-FQIDEAQQRISF 147 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + + L E R+L+ L++N G+ +++Q+ Y ++ + + V++SHI LRKK+ Sbjct: 148 KNQRLDLTPTEYRLLKLLVSNPGRVYSRSQLLDLCYQQ-EQLIIDRVIDSHIKNLRKKIS 206 Query: 203 NKL 205 L Sbjct: 207 TAL 209 >gi|297201899|ref|ZP_06919296.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197712728|gb|EDY56762.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 233 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 14/134 (10%) Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR---------VFSDGRDPEVQGEV 146 DD + KP + E++AR+ A+ RR + ++ + P+R +S RD G Sbjct: 104 DDYITKPFNIDEVVARITAVLRRTRPADVLPQRPPLRYGDLELDETTYSVHRD----GRT 159 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L E +L +L+ N G+ V K Q+ ++ E VVE++IS LR+KL + LG Sbjct: 160 VQLTPTEYALLRFLVRNGGRIVPKEQLLRHVWQYEHTPPESTVVETYISYLRRKL-DALG 218 Query: 207 FDPVDSKRFLGYSI 220 + ++R +GY + Sbjct: 219 PPVITTRRGVGYGL 232 >gi|254251535|ref|ZP_04944853.1| DNA-binding response regulator [Burkholderia dolosa AUO158] gi|124894144|gb|EAY68024.1| DNA-binding response regulator [Burkholderia dolosa AUO158] Length = 251 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 91 IDVLRTLRARGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 149 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+E+ G + + + G L RE +LE L+A G ++K+Q+ Sbjct: 150 --QAGRSESLIRHGTLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 207 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 208 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 247 >gi|76811709|ref|YP_333587.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|134277394|ref|ZP_01764109.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|167719473|ref|ZP_02402709.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] gi|167902588|ref|ZP_02489793.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] gi|237812357|ref|YP_002896808.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|254179723|ref|ZP_04886322.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|254188880|ref|ZP_04895391.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|254261213|ref|ZP_04952267.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] gi|254297574|ref|ZP_04965027.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|76581162|gb|ABA50637.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|134251044|gb|EBA51123.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|157806912|gb|EDO84082.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|157936559|gb|EDO92229.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|184210263|gb|EDU07306.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|237503028|gb|ACQ95346.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|254219902|gb|EET09286.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 237 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 3/137 (2%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 + +S +P++ +++ + ++G DD V KP +E +ARV A+YRR + +E Sbjct: 68 KNYSNIPVLILTNAILESEVVAALEAGADDYVIKPPRKQEFVARVKALYRRATETRTLSE 127 Query: 128 ---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 GP R+ + + E L +E I+E L N G+ V++ ++ ++G + Sbjct: 128 LIEIGPYRIQTSEKVVYFHHEAITLSPKEYEIIELLARNIGQIVSRDKMVYQVWGRLPDE 187 Query: 185 VEENVVESHISKLRKKL 201 +++HI ++R+KL Sbjct: 188 AAFRTLDTHIYRIRRKL 204 >gi|332970747|gb|EGK09727.1| response regulator VanR [Desmospora sp. 8437] Length = 249 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 8/144 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR VP+I ++ + +G DD + KP E+ AR+ A RR N Sbjct: 79 RHIRESRNVPVIILTAREEETDLIAGLSTGADDYMTKPFSIPELKARLQAHMRRYLYLNA 138 Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + + + + ++ EV L +E +ILE +M+ K +K+Q+F ++ Sbjct: 139 KPDQPEAILVHGELCLNRNSHELSIKSEVHKLTSKEFKILELMMSYPTKIFSKSQLFRSV 198 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G D +EN V HI +LR+K+ Sbjct: 199 WG-DDSMSDENTVMVHIRRLRRKI 221 >gi|322805225|emb|CBZ02789.1| two-component system response regulator QseB [Clostridium botulinum H04402 065] Length = 223 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 4/160 (2%) Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L ++IR +++ VP++ I+ + + F G DD + KPI E++ RV A+ RR ++ Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRSQI 122 Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N R G D + + LP++E ++ L++ K + Q+ I+G+ Sbjct: 123 INERRIVIGETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIWGI 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E + V+ HI++LR + ++ F+ + + R LGY + Sbjct: 183 ESET-DPRTVDVHINRLRDRFKDNKDFNII-TIRGLGYKV 220 >gi|307329401|ref|ZP_07608563.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306884935|gb|EFN15959.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 97/216 (44%), Gaps = 16/216 (7%) Query: 16 IALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS- 71 IAL D G+ EGF + E+ L D + I L+ G ++ R +RA Sbjct: 12 IALAVDRGLRAEGFGVDIAENGEKALGLIRHNDYAVIVLDLMLPGRNGYDVCRTLRAAGI 71 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 P++ ++ D D G DD + KP +LAR+ A+ RR + + P+ Sbjct: 72 ATPVLILTAKDGEYDEADALDLGADDYLTKPFSFVVLLARIRALLRR-----SAPQRSPV 126 Query: 132 RVFSD-GRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 D DP E L RE +LE+L+ + V+KT + + ++ + E Sbjct: 127 LRAGDLWLDPAAHRCGRGDERLDLTPREFGLLEFLLRHPDTVVSKTDLLAQVWDAWFEG- 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + N+VE ++ LR+K+ G +D+ R +GY +D Sbjct: 186 DPNIVEVYVGYLRRKIDIPFGRSAIDTVRGVGYRLD 221 >gi|303233229|ref|ZP_07319901.1| putative response regulator ArlR [Atopobium vaginae PB189-T1-4] gi|302480619|gb|EFL43707.1| putative response regulator ArlR [Atopobium vaginae PB189-T1-4] Length = 223 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 89/179 (49%), Gaps = 5/179 (2%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D + ++ L GK ++L R +R ++ +P++ ++ S ++ D+G DD + KP Sbjct: 46 DAAIVDRMLPGKDG--VDLIRELRHNNNSMPILMLTARTSTTDKVEGLDAGADDYMTKPF 103 Query: 104 HHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LAR+ A+ RR V ++ + D + L +E +L+ L+ Sbjct: 104 EADELLARLRALTRRQGDVMLDQVSFADFTLDLTTHDLTCKNHTVHLSGKEFEVLKMLLN 163 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + V+K + + ++G+ A EN VE+++S LRKKL + + R LGY ++ Sbjct: 164 SPSRVVSKQDLLTYVWGV-TSATNENSVEAYVSFLRKKLMYVHSRVQITTLRMLGYRLE 221 >gi|228477728|ref|ZP_04062357.1| response regulator [Streptococcus salivarius SK126] gi|228250617|gb|EEK09828.1| response regulator [Streptococcus salivarius SK126] Length = 226 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP +LA++ + RR Sbjct: 67 IRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQ 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + D QGEV PL + E +IL+ L + G V++ + ++ D Sbjct: 127 SLLEYMGVILNLKAMDLVYQGEVVPLTKNEFQILQVLFDHAGNIVSREDLMKELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL D +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGL 222 >gi|227821360|ref|YP_002825330.1| putative two-component response regulator transcriptional regulatory protein [Sinorhizobium fredii NGR234] gi|227340359|gb|ACP24577.1| putative two-component response regulator transcriptional regulatory protein [Sinorhizobium fredii NGR234] Length = 233 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETG 129 P++ +S + + +G DD + KP E+LARV + RR + G Sbjct: 76 HTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPDQDMVYRVG 135 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 + + QG+ PL RE R+LEYLM N G+ V +T + ++ FD + N Sbjct: 136 DLELDRLAHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP--QTN 193 Query: 189 VVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 V++ H+S+LR K+ F+P + + R GY I Sbjct: 194 VIDVHVSRLRSKIEKD--FEPPLLRTVRGAGYMI 225 >gi|115352716|ref|YP_774555.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115282704|gb|ABI88221.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 220 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 IDVLRTLRARGLSLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 118 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+E+ G + + + G L RE +L+ L+A G ++K+Q+ Sbjct: 119 --QAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLQALLARPGAVLSKSQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 177 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 216 >gi|319946568|ref|ZP_08020802.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319746616|gb|EFV98875.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 233 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 11/173 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ R IR S VP+I +S + + + G DD V KP +RE+ ARV A+ RR Sbjct: 61 LEVARTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRTE 120 Query: 119 LKVSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L V + T G +++ D + +G+ L RE +L +L + G+ + + Sbjct: 121 LTVESQTESTSDSDIVIGDLKIIPDTFLAQKKGKELELTHREFELLYHLATHVGQVMTRE 180 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + G + + ++R +GY + N Sbjct: 181 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDIPGRPEYILTRRGVGYYMRNN 232 >gi|312864239|ref|ZP_07724473.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] gi|311100240|gb|EFQ58449.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] Length = 225 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 14/119 (11%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR---DPE----VQ 143 D+G DD + KPI +E+LAR+ ++ RR+ +ET ++ + G D E V Sbjct: 93 LDAGADDYLTKPISLKELLARLRSLERRV------SETFTAKILTLGSVRLDQEEQELVA 146 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 G L RE +++ + M N K++ +F I+ +E V+E++V +IS LR+KL+ Sbjct: 147 GNAIRLSSRETKLMAHFMLNPAKKLTTDHLFKTIWD-DEEDVDESIVWVYISYLRQKLQ 204 >gi|229593016|ref|YP_002875135.1| DNA-binding response regulator CreB [Pseudomonas fluorescens SBW25] gi|229364882|emb|CAY52950.1| two-component system, response regulator [Pseudomonas fluorescens SBW25] Length = 222 Score = 58.5 bits (140), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 15/223 (6%) Query: 2 FVLIDDRALVKDGYI-ALFGDDGVSLEGFNS--LEFEEWLQSSAREDVSAIEAFLIGKGE 58 ++++D A + D I AL G EGF + L + + R+ + + IG + Sbjct: 4 ILIVEDEAAIADTLIFALQG------EGFTTTWLSLGQEALAYQRQTPADLVILDIGLPD 57 Query: 59 KV-LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E + +R S+VP++ +S + + G DD V KP RE+ ARV AI + Sbjct: 58 ITGFETCKQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVTARVRAILK 117 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R+ S A +V + + + L R E R+L+ L+ + ++ Q+ A+ Sbjct: 118 RIGPS---AAPAVFQVDLERMQISYRSQPLSLTRHEFRLLQSLLEQPERVFSREQLLDAV 174 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 D E N ++SHI LR KLR+ +P+ + R LGYS Sbjct: 175 GVAADAGYERN-IDSHIKSLRSKLRSVAADAEPIQTHRGLGYS 216 >gi|294501956|ref|YP_003565656.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294351893|gb|ADE72222.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 227 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 103/207 (49%), Gaps = 14/207 (6%) Query: 23 GVSLEGFNSLEFEEWLQ--SSARE---DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIG 77 G++ EGF+ ++ ++ + A+E ++ ++ L G E+ R+++ + +I Sbjct: 25 GLTNEGFDIKATQDGIEGINVAKEFKPHIAIVDVML--PGMDGFEVCRLLKKMGDIAVIM 82 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNRAETGPIRVFSD 136 ++ + + G DD + KP E+LAR+ A I + + GP ++ D Sbjct: 83 LTAKDQVDDRVKGLTIGADDYMVKPFSFEELLARIQARIRNQFPNLLDEVSIGPFKI--D 140 Query: 137 GRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 R E++ + L E +L++L+ N G ++K+ I ++G +D EEN+VE +I Sbjct: 141 DRRKEIKYLNHILDLSPTEYALLKFLVINHGLVLSKSTILDRVWG-YDFGGEENIVEVYI 199 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSID 221 LR+KL++ + + R +GY ID Sbjct: 200 RSLREKLQDH-SRTVIRTLRGVGYRID 225 >gi|237736770|ref|ZP_04567251.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] gi|229420632|gb|EEO35679.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] Length = 223 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/162 (24%), Positives = 87/162 (53%), Gaps = 14/162 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R I+ +++ P+I ++ + + F+ G DD + KP +++ +LARV ++ R+ +NN Sbjct: 70 REIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRK---TNN 126 Query: 125 RAET----GPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E+ G + + +GE+ P +E +L YL+ N +++ ++ + ++G Sbjct: 127 MVESIIEIGDLVINDTSHSVSNSKGEIELAP-KEYDLLVYLIKNNKIALSREKLLNEVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D ++ +++HI LRK K+G + + + R +GY +D Sbjct: 186 -YDFLGDDRTIDTHIKNLRK----KIGKNAIKTIRGIGYKLD 222 >gi|256371881|ref|YP_003109705.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] gi|256008465|gb|ACU54032.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] Length = 225 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 7/164 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S VP+I +S + + + G DD V KP RE+LARV AI RR++ Sbjct: 62 LEVARAIRHRSTVPIIVLSARDNELDRVTGLELGADDYVTKPFSPRELLARVRAIERRVE 121 Query: 121 VSNNRAETGPIR-VFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + A V D R +V + P L RE +L Y A+ + + ++ + Sbjct: 122 ANPSSAAALSFNGVDWDPRARQVLRDGVPVALTNREFDLLGYFFAHPATALTRRELLDGV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G + ++ V+ H+ +LRKKL + V +GY D Sbjct: 182 WGP-EWYGDDRTVDVHVLQLRKKLGGAIAISTVWG---VGYRFD 221 >gi|297567507|ref|YP_003686479.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851956|gb|ADH64971.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 226 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 12/215 (5%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL+ +G DDG+ ++ + + D+ ++ L + +L R +R Sbjct: 14 ALIAEG----LRDDGLMVDHAPDAAIGQGMAELEAYDLLILDVMLPEGPQAGFDLARTLR 69 Query: 69 AH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 ++P++ ++ + + L D+G DD + KP RE+ AR+ A+ RR K Sbjct: 70 NQRDKIPILFLTARGDMDSKLTGLDTGGDDYLTKPFDFRELRARIRALVRRAKGEAANLI 129 Query: 128 TGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 P D +V G+ PL RE ++E L N G+ ++ + ++ E V Sbjct: 130 PLPKGYVLDLSAHQVLKGGQPVPLTPREYALVECLGLNPGRAYSRNSLIERVWPGESE-V 188 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + VV+ ++S LR+ KLG D V++ R LGY + Sbjct: 189 DTKVVDVYVSSLRR----KLGEDFVETVRGLGYRL 219 >gi|154687605|ref|YP_001422766.1| putative two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154353456|gb|ABS75535.1| putative two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 225 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 3/160 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ +R+ + +P++ ++ + F SG DD + KP E+ ARV A+ +R + Sbjct: 61 FEVSEAVRSFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYR 120 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + T G + + R G LPRRE +L L K ++ Q+ I+ Sbjct: 121 ITAEKLLTIGTVTLDKQSRTVTRGGGAGLTLPRREFELLFKLAGYPNKTFSREQLIEDIW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G FD +E V+ HI +LR++ K + + R LGY Sbjct: 181 G-FDYEGDERTVDVHIKRLRERFPEKDYPFAIHTVRGLGY 219 >gi|104782628|ref|YP_609126.1| transcriptional regulator of kdp operon [Pseudomonas entomophila L48] gi|95111615|emb|CAK16336.1| transcriptional regulator of kdp operon [Pseudomonas entomophila L48] Length = 231 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 82/164 (50%), Gaps = 14/164 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G++VL R +R S VP++ +S S +D D G +D V KP +E LARV A+ Sbjct: 63 GQQVL---RELREWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALL 119 Query: 117 R---RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R ++ + + A GP+ V R ++G L R+E +L L + G+ + + Q+ Sbjct: 120 RQAPQVGSATSTASFGPLVVDFAFRKVTLEGVEVSLTRKEYALLAQLAGHPGRVITQQQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216 I+G +V ++H ++ LR KLG DP + RF+ Sbjct: 180 LKDIWG------PTHVDDTHYLRIVVGHLRQKLGDDPT-APRFI 216 >gi|330976281|gb|EGH76342.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 229 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 52/213 (24%), Positives = 101/213 (47%), Gaps = 24/213 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 +++DD A +++ IA+ + + G++ +E E Q+ + D+ ++ L Sbjct: 6 ILIVDDEAPIRE-MIAV----ALEMAGYDCIEAENSQQAHPIIVDRKPDLILLDWML--P 58 Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ +P+I ++ + + G DD + KP RE++AR+ Sbjct: 59 GTSGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR ++ A PI V DP + G+ + E R+L++ M ++ + Sbjct: 119 AVLRRAGPTDGEA---PIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAY 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ ++G + VEE V+ HI +LRK L Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207 >gi|295089945|emb|CBK76052.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 231 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 14/210 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V DDR +V+ I L G+ ++ ++ LE E L++ +V+ + ++ G Sbjct: 4 ILVCDDDRQIVEAIDIYLTGEGFEVIKAYDGLEALELLKT---HEVNLMIVDVMMPGLDG 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +R S +P+I +S + + G DD + KP + E++ARV + RR Sbjct: 61 IRTTLKVRETSSIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLRRYT 120 Query: 121 VSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N RV+ G ++ V GE+ L E IL L+ N GK + Q Sbjct: 121 QLGNMNTQSDSRVYKCGGLQINDENKEVLVDGELIKLTPIEYNILLLLVKNAGKVFSIDQ 180 Query: 173 IFSAIYGLFDEAV-EENVVESHISKLRKKL 201 I+ I+ +EA+ +N V HI +R+K+ Sbjct: 181 IYEEIWN--EEAIGADNTVAVHIRHIREKI 208 >gi|293115618|ref|ZP_05792356.2| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM 2876] gi|292809129|gb|EFF68334.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM 2876] Length = 235 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 103/219 (47%), Gaps = 14/219 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V+ D++A+VK +L DD E + + EE L+ + ++ I L+ Sbjct: 11 VLVVDDEKAIVKGIKFSLEQDDA---EVSCAYDGEEALELAKSQEFDIILLDLMLPKIDG 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R IR S VP+I I+ + + G DD + KP + E+ AR+ AI RR Sbjct: 68 LSVCRQIREFSNVPIIMITAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAIMRRNS 127 Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + ++ G +R+ DGR + L +E +LE L+ N K + + Sbjct: 128 FNLKKEQSDRVIIVGDLRLDRDGRRLFIGDREVNLTAKEFDVLELLVMNPNKVYGRDNLL 187 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 + ++G ++ + V+ HI +LR+K+ + DP + K Sbjct: 188 NIVWG-YEYPGDARTVDVHIRRLREKIED----DPSNPK 221 >gi|228912002|ref|ZP_04075727.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228847657|gb|EEM92586.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121 IR +P+I +S + SG DD ++KP + E++ARV + RR K + Sbjct: 68 IREDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNSSI 127 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY- 178 +N++ E G + V +D R ++G+ L +E ILE L N+G ++ +I+ A++ Sbjct: 128 EHNKSILEIGDLTVNTDTRQVWIRGKETRLTPKEFAILELLARNKGIVLSVAKIYEAVWE 187 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 +F ++ +N V HI+K+R K+ Sbjct: 188 EVFYKS--DNTVMVHITKIRDKI 208 >gi|229161432|ref|ZP_04289413.1| Two-component response regulator [Bacillus cereus R309803] gi|228621969|gb|EEK78814.1| Two-component response regulator [Bacillus cereus R309803] Length = 228 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +P+I +S + SG DD ++KP + E++ARV + RR K N Sbjct: 68 IREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTNT 127 Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E G + V +D R ++G L +E ILE L N+G ++ +I+ A++ Sbjct: 128 DNDKSILEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIYEAVWK 187 Query: 180 -LFDEAVEENVVESHISKLRKKL 201 +F ++ +N V HI+K+R K+ Sbjct: 188 EVFYKS--DNTVMVHITKIRDKI 208 >gi|226310545|ref|YP_002770439.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093493|dbj|BAH41935.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 251 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 25/206 (12%) Query: 24 VSLEGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80 V+ +G L+ EEW DV ++ L G + + + IR+ + P+I ++ Sbjct: 56 VAHDGHKGLKLALQEEW-------DVILLDVML--PGLDGIAVCQKIRSVKKTPIIMLTA 106 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG----PIRVFSD 136 S+ + DSG DD + KP E+LAR+ ++RR + N T + V + Sbjct: 107 RDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFRRQEEQENVPRTMLAHRGLVVQIE 166 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 GR + L +RE +L M N + + + + ++G F+ AVE NVV+ ++ Sbjct: 167 GRIVTKNNQPVELTKREYDLLVTFMKNINRVLPRDVLLDTVWG-FEAAVETNVVDVYV-- 223 Query: 197 LRKKLRNKLGFDPVDSK----RFLGY 218 + LRNK+ F DS R +GY Sbjct: 224 --RYLRNKIDFPNEDSYISTVRGIGY 247 >gi|182417947|ref|ZP_02949257.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237669309|ref|ZP_04529291.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378256|gb|EDT75790.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237655196|gb|EEP52754.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 235 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 8/143 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-- 124 IR + P++ ++ F +G DD ++KP + E L RV A+ RR + Sbjct: 72 IRKKTMAPILFLTARTQESDKAIGFSAGGDDYLSKPFSNAEFLMRVKALIRRYSQYGSIP 131 Query: 125 RAETGPIRVFSDG------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ PI + SD + V G + PL E ILE L NR K + I+S+I+ Sbjct: 132 TQQSNPILLVSDMVINTDEKTVSVDGVLIPLTSTEYDILELLALNRKKIFSMENIYSSIW 191 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 +N + HI LRKK+ Sbjct: 192 NDSYIGASDNAIMVHIKNLRKKI 214 >gi|15887773|ref|NP_353454.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|325291858|ref|YP_004277722.1| Phosphate regulon transcriptional regulatory protein phoB [Agrobacterium sp. H13-3] gi|15155345|gb|AAK86239.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|325059711|gb|ADY63402.1| Phosphate regulon transcriptional regulatory protein phoB [Agrobacterium sp. H13-3] Length = 227 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + +G DD V KP E++ARV A+ R Sbjct: 62 IELCRRLRMRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLR 121 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + V ++ + G I + + + L E R+LE+LM + G+ +++Q+ Sbjct: 122 RARPEVLSSVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMTSPGRVFSRSQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK L D + + R GYS++ Sbjct: 182 GVWG-HDIYVDERTVDVHVGRLRKALNFSHMQDVIRTVRGAGYSME 226 >gi|37679606|ref|NP_934215.1| DNA-binding response regulator [Vibrio vulnificus YJ016] gi|37198350|dbj|BAC94186.1| DNA-binding response regulator [Vibrio vulnificus YJ016] Length = 219 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 22/219 (10%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 +L K G++ DG+ + EEW + ++ + KG I Sbjct: 19 SLEKTGWVPELSQDGI--DALYRATSEEWDAMVLDLGLPKLDGLTVLKG--------IRD 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 + P++ +S +L ++ ++G DD + KP E++AR+ A RR S N + Sbjct: 69 ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPV 126 Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 I S D R +V QG+ L E +++ Y + N K +++T++ IY FD Sbjct: 127 MQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFVHNADKVISRTELVEHIYKQDFDR- 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + N +E I ++RKK+ + + + R LGY ++ N Sbjct: 186 -DSNTIEVFIGRIRKKIAPNI----IKTVRGLGYQLNAN 219 >gi|320161443|ref|YP_004174667.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995296|dbj|BAJ64067.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 226 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 4/144 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R IR S VPLI ++ L + G DD + KP RE++ARV A+ RR Sbjct: 61 LDVAREIRRQSDVPLIMVTARVEETDRLIGLELGADDYIVKPYSVRELVARVRAVLRRFN 120 Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S+ ++ G + V D + E L E ++L LMA G+ + Q+ AI Sbjct: 121 RSSGGSQILREGNLEVDLDTHTVKRGDEEIFLTPTEFQLLSTLMAQPGRVFTRLQLLEAI 180 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 G+ E E +++HI LR K+ Sbjct: 181 QGVAYEGYERT-IDAHIKNLRAKI 203 >gi|302874399|ref|YP_003843032.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307690997|ref|ZP_07633443.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577256|gb|ADL51268.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 227 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 4/143 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +I+R S+V + ++ SL ++ + G D+ + KP+ RE+ ARV A++RR+ V Sbjct: 62 EVCKILRKISEVYIFMLTAKASLSDKIEGLNIGADEYLIKPLSPRELTARVNALFRRIGV 121 Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +A + + R ++ G L E IL L ANRG+ + I ++ Sbjct: 122 EEPKALSFSNSHLVINKTDRSVKIDGIEVSLTPNEFDILYLLAANRGRAFTREDIIERVF 181 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 + D + +++HI LRKK+ Sbjct: 182 TM-DFEGSDRTIDAHIKNLRKKI 203 >gi|254489992|ref|ZP_05103187.1| response regulator receiver domain protein [Methylophaga thiooxidans DMS010] gi|224465077|gb|EEF81331.1| response regulator receiver domain protein [Methylophaga thiooxydans DMS010] Length = 227 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 10/151 (6%) Query: 80 DYPSL--------QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 DYP L Q ++ +SG DD + KP H E+LAR+ A+ RR +N GP Sbjct: 72 DYPILILTARGRWQDKVEGLESGADDYLVKPFHFEELLARLNALSRRASGWANPTLCCGP 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I + + +V L E R+L YL+ + G+ ++KT++ IY D+ + NV+ Sbjct: 132 ICLNPSTQQVTKHDQVIDLTAYEYRLLHYLLLHAGEVISKTELTDHIYEQ-DQDRDSNVI 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E + +LR KL +P+++ R GY ++ Sbjct: 191 EVFVKRLRGKLDPDKALNPIETLRGRGYRLN 221 >gi|326203105|ref|ZP_08192971.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325986751|gb|EGD47581.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 230 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 7/154 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IR S VP+I I+ + D G DD + KP E++AR+ AI RR+ Sbjct: 62 FEVCREIRQKSNVPIIMITAKGEDSDRIMGLDIGADDYIVKPFSPGEVMARIRAILRRVD 121 Query: 121 VS---NNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S N + P + + + +V G L ++E IL L N GK ++ + + Sbjct: 122 NSNEDNKKVTQHPGLEINIAEYEVKVNGSPVNLTKKEIEILWLLATNPGKVFSRDNLLDS 181 Query: 177 IYGLFDEAVEENVVESHISKLRKK--LRNKLGFD 208 ++G ++ + V++HI +LR K + +K+ +D Sbjct: 182 VWG-YEYFGDARTVDTHIKRLRAKIDISDKISWD 214 >gi|307243687|ref|ZP_07525827.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492896|gb|EFM64909.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 217 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 81/161 (50%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S++P++ ++ + + +D F + D + KP + ARV ++ ++ Sbjct: 59 LEVLKEIRKTSKLPILILTAFSDEEYKIDAFTNLADGYIEKPFSLPVLKARVDSLIKKNF 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E I V ++ GE + +E IL+YL+ N G+ + + QI ++ Sbjct: 119 GRIEKFEYKNIEVNFTSYTAKINGESIDINAKELEILKYLLDNEGQALTRMQIIDNVWKE 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL D + + R +GY ++ Sbjct: 179 TEEIPFDRVIDVYIKELRKKLE----LDCIVTIRNVGYKLE 215 >gi|253583326|ref|ZP_04860524.1| two component transcriptional regulator [Fusobacterium varium ATCC 27725] gi|251833898|gb|EES62461.1| two component transcriptional regulator [Fusobacterium varium ATCC 27725] Length = 221 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 84/161 (52%), Gaps = 7/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LK 120 + R IR SQVP+I ++ L F+ D+ + KP + + ++A+V A+ RR Sbjct: 63 VCRKIREESQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGKI 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V E G + + + R+ ++ + L +E +L + + N+G +++ +I ++++G Sbjct: 123 VDKTYLEFGDLIIDTSKREVKLGDVILELTPKEYDLLYFFIENKGLALSREKILNSVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + V++HI K+LR K+G + + + R GY + Sbjct: 182 WDYFGDSRTVDTHI----KRLRKKIGDNFIQTVRGFGYKFE 218 >gi|229101090|ref|ZP_04231857.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28] gi|228682333|gb|EEL36443.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28] Length = 237 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 11/150 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 63 IEVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122 Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V SNN + F + E L +E +L++ +N G+ KTQ Sbjct: 123 VLGSNNTVQEKTTLAFKGLTINLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 +F ++ D +E +N V HI KLRKK+ Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKI 210 >gi|213971813|ref|ZP_03399916.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas syringae pv. tomato T1] gi|301382522|ref|ZP_07230940.1| transcriptional activator CopR [Pseudomonas syringae pv. tomato Max13] gi|213923428|gb|EEB57020.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas syringae pv. tomato T1] Length = 227 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 5/156 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126 A S VP++ ++ + + + G DD + KP E+LARV ++ RR + N Sbjct: 69 AGSLVPVLFLTARDGVDDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGAGAPNLTSI 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 + G + V R G+ L +E +LE LM RG+ ++K+ I S ++ + FD Sbjct: 129 KIGDLEVDLLKRRASRSGQRIDLTAKEFALLELLMRRRGEVLSKSLIASQVWDMNFDS-- 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NV+E I +LR K+ + + + R +GY +D Sbjct: 187 DTNVIEVAIRRLRAKIDDDFDTKLIQTSRGMGYMLD 222 >gi|187778014|ref|ZP_02994487.1| hypothetical protein CLOSPO_01606 [Clostridium sporogenes ATCC 15579] gi|187774942|gb|EDU38744.1| hypothetical protein CLOSPO_01606 [Clostridium sporogenes ATCC 15579] Length = 223 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 4/160 (2%) Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L ++IR +++ VP++ I+ + + F G DD + KPI E++ RV A+ RR ++ Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRSQI 122 Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N R G D + + LP++E ++ L++ K + Q+ I+G+ Sbjct: 123 INERRIVIGETTFLYDFLSAKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIWGI 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E + V+ HI++LR++ + F+ + + R LGY + Sbjct: 183 ESET-DPRTVDVHINRLRERFKYNKDFNII-TIRGLGYKV 220 >gi|52142897|ref|YP_083932.1| response regulator [Bacillus cereus E33L] gi|51976366|gb|AAU17916.1| response regulator [Bacillus cereus E33L] Length = 235 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P++ IS + ++G DD ++KP H+ ++A++ + RR Sbjct: 65 RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSYLRRAYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 KV E + ++ + +++ + + R E +LE LM N + V++ + + ++ Sbjct: 125 PKVEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEAILLEMLMKNYPRIVSREVLLNKLW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223 + V++N + + +++RKKL+ DP+++ R +GY I W+ Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLQIKDPIETIRSVGYRLHITWD 230 >gi|68053219|sp|Q8GP20|RSSB_SERMA RecName: Full=Swarming motility regulation protein rssB gi|59939896|gb|AAN28326.2| response regulator protein RssB [Serratia marcescens] Length = 219 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 6/151 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127 A +P+I ++ +++ ++ DSG +D + KP E+++RV A+ RR+ ++ Sbjct: 69 AGQNIPIIILTARDRIESLVNSLDSGANDFLAKPFALPELISRVKAVNRRMAGFASQTWS 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + + + E+ L ++E +L LM G V K + ++G D +VE Sbjct: 129 LGALYLDPVNHQVMLDNELLMLSKKEYHLLHELMRCAGTVVRKAVLEQRLFGHGD-SVES 187 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 N +E H+ LR+ K+G D V + R +GY Sbjct: 188 NSLEVHMHNLRR----KIGKDRVITVRGIGY 214 >gi|17545269|ref|NP_518671.1| response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17427560|emb|CAD14078.1| probable response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 232 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ + +P++ ++ S+ + D G DD + KP E+ ARV A+ RR Sbjct: 66 LKRLRSRGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRGTGG 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 GP+ GR ++ ++ L RE +LE L++ G+ V+K Q+ + G + Sbjct: 126 GATLVRHGPLAFDQVGRIAYIRDQMVDLSARELGLLEILLSRAGRLVSKEQLVDHLCG-W 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E V N +E ++ +LRKK+ ++ + + R LGY ++ Sbjct: 185 GEEVSNNAIEVYVHRLRKKI--EVDGIRIATVRGLGYCLE 222 >gi|269968140|ref|ZP_06182175.1| DNA-binding response regulator [Vibrio alginolyticus 40B] gi|269827271|gb|EEZ81570.1| DNA-binding response regulator [Vibrio alginolyticus 40B] Length = 219 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 12/153 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ +S +L ++ ++G DD + KP E++AR+ A RR S N + I Sbjct: 73 TPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPVMQIG 130 Query: 133 VFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 S D R +V QG+ L E +++ Y M N K +++T++ IY FD + N Sbjct: 131 DLSLDTRTSKVMWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEHIYKQDFDR--DSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E I ++RKK+ K+ + + R LGY ++ Sbjct: 189 TIEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217 >gi|262372854|ref|ZP_06066133.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262312879|gb|EEY93964.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 229 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 4/129 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130 +P++ ++ +L L F +G DD + KP E++ R+ A+ +R +VS+++ + Sbjct: 77 IPILMLTARDTLDDKLKGFTAGTDDYLVKPFDFNELVMRIRALIKRSLGEVSSSKIQIHD 136 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + S + G+ LPR + ++L+ LM N K + K +I ++G DE E + + Sbjct: 137 LILDSSTQTVTRAGQHIELPRIQFKLLKILMRNSPKVITKQEIIIELWG--DEEPESDAL 194 Query: 191 ESHISKLRK 199 SHI LRK Sbjct: 195 RSHIYNLRK 203 >gi|302874361|ref|YP_003842994.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307691040|ref|ZP_07633486.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577218|gb|ADL51230.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 228 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 5/137 (3%) Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSN-NRAETGPIRVFSDGRDPEVQGE 145 L F+ G +D + KP E+ AR+ AI + + K+ N E I++ + + E Sbjct: 88 LKAFNLGANDYLTKPFFLEELKARIIAILKSMGKIKKENLIEFMDIQIDIKTKTAYIGDE 147 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 + + ++LEYL+ N+G + K QIF + G +A E ++E +IS+LRK+L Sbjct: 148 KLDINEKSYKLLEYLVINKGVLLFKEQIFDNVCGYGSDASTE-IIEVYISRLRKQLA-PF 205 Query: 206 GFDP-VDSKRFLGYSID 221 +D + +KR +GY +D Sbjct: 206 NYDKYIVNKRGMGYMLD 222 >gi|126699135|ref|YP_001088032.1| two-component response regulator [Clostridium difficile 630] gi|254975088|ref|ZP_05271560.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255092477|ref|ZP_05321955.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255100562|ref|ZP_05329539.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255306500|ref|ZP_05350671.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|255314216|ref|ZP_05355799.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255516894|ref|ZP_05384570.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255649995|ref|ZP_05396897.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260683146|ref|YP_003214431.1| two-component response regulator [Clostridium difficile CD196] gi|260686744|ref|YP_003217877.1| two-component response regulator [Clostridium difficile R20291] gi|306520071|ref|ZP_07406418.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|115250572|emb|CAJ68396.1| Two-component response regulator [Clostridium difficile] gi|260209309|emb|CBA62696.1| two-component response regulator [Clostridium difficile CD196] gi|260212760|emb|CBE03894.1| two-component response regulator [Clostridium difficile R20291] Length = 224 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 7/159 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124 IR S+VP+I IS S + + G DD + KP ++A+V A+ RR V NN Sbjct: 67 IRKISKVPIIFISSRNSNMDVIMGVNLGADDYIQKPFSVDVLVAKVNALLRRTYNFVDNN 126 Query: 125 RAETGPIRVFSDGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + V D + E L + E +IL LM +G+ V++ ++ ++ D Sbjct: 127 SNQIIHNGVTLDLSTATINYEDNTIELTKNEIKILHELMKYKGQIVSRNKLMKKLWD-ND 185 Query: 183 EAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 V++N + +++++R KL N++G D +++KR LGY I Sbjct: 186 WFVDDNTLTVNVNRIRSKL-NEIGLEDFIETKRGLGYII 223 >gi|91223635|ref|ZP_01258900.1| DNA-binding response regulator [Vibrio alginolyticus 12G01] gi|91191721|gb|EAS77985.1| DNA-binding response regulator [Vibrio alginolyticus 12G01] Length = 218 Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 3/142 (2%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IR ++P++ ++ ++ + D G DD + KP E+LAR+ + RR Sbjct: 60 LEVLRNIRKGGFKLPVMILTARDDIRDRVQGLDGGADDYLGKPFALEELLARLRVLIRRQ 119 Query: 120 KVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + G + + + L R E +IL LM N G+ +K Q+ +++ Sbjct: 120 SGSAEEIIQVGQLSLSLSEQSIRYDDAPLKLTRNEFKILTSLMTNVGRVQSKEQLQQSLH 179 Query: 179 GLFDEAVEENVVESHISKLRKK 200 G +DE +N +E HI LRKK Sbjct: 180 G-WDEGSSDNAIEVHIHNLRKK 200 >gi|257869329|ref|ZP_05648982.1| DNA binding response regulator [Enterococcus gallinarum EG2] gi|257803493|gb|EEV32315.1| DNA binding response regulator [Enterococcus gallinarum EG2] Length = 230 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 5/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125 IR S+VP+I +S + + G DD + KP +LA++ A+ RR + ++ + Sbjct: 67 IRNISEVPIIFLSSMDQQMNQIMAMNMGADDYLTKPFDLAFVLAKIQALLRRSYQYTHQQ 126 Query: 126 AET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +T G + + + E PL E RIL L+ +GK V K I ++ + Sbjct: 127 VQTFSLGDVTFHPIENLLKSKTESLPLSPNESRILSLLLQQQGKIVPKETIIEMLWN-SE 185 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ N + ++++LRKKL D + + + GY I+ Sbjct: 186 EFIDNNTLAVNMTRLRKKLSQTGLSDLIQTVKNKGYLIE 224 >gi|253577574|ref|ZP_04854886.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843043|gb|EES71079.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 229 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 9/160 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ S VP++ ++ ++ + D G DD + KP E+LARV A+ RR K S + Sbjct: 67 RLREGGSTVPVLMLTAKDEVENRVKGLDIGADDYLVKPFALEELLARVRALLRR-KDSGS 125 Query: 125 RAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R+ + + +F D R+ G+ L +E +L M N + + + I I+ Sbjct: 126 RSGSQRL-IFEDIIMDLDSREVTRAGQRLELTAKEFELLHLFMQNPKRLLTRDLIMDKIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G +D + E NV+E +I+ LR+K G + + R GY Sbjct: 185 G-YDYSGESNVLEVYIAMLRQKTEEHGGKRVIQTIRGAGY 223 >gi|257791289|ref|YP_003181895.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|317490425|ref|ZP_07948908.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325831281|ref|ZP_08164573.1| transcriptional regulatory protein afsQ1 [Eggerthella sp. HGA1] gi|257475186|gb|ACV55506.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|316910469|gb|EFV32095.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325486882|gb|EGC89329.1| transcriptional regulatory protein afsQ1 [Eggerthella sp. HGA1] Length = 223 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 12/223 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIE-AFLIGKGEKV 60 +L++D A + L +G + + L S R D++ ++ A G G V Sbjct: 3 MLLVEDDAAIVASLTDLLRSEGYETRCADGQDAAVELLRSERFDLALVDVALAQGNGFAV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + V + SD +T+ D G DD + KP RE+L+R+ ++ RR Sbjct: 63 CAAAKACDPAPAVIFLTASDDEF--STVAGLDMGADDYIAKPFRARELLSRIRSVLRRTN 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ G + + + G L E R+L +RGK V + + +AI+ Sbjct: 121 AASSLLRLGDVEIDAGTACVRKAGRDLALTALEYRLLLLFAQSRGKLVTREHVRNAIWDS 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGY 218 E V +N + ++ K+LR+K+ DP + + R LGY Sbjct: 181 AGEYVSDNTLSVYV----KRLRDKVEDDPAEPRLILTVRGLGY 219 >gi|148378896|ref|YP_001253437.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931468|ref|YP_001383278.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936439|ref|YP_001386827.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148288380|emb|CAL82457.1| two component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927512|gb|ABS33012.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932353|gb|ABS37852.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 223 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 4/160 (2%) Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L ++IR +++ VP++ I+ + + F G DD + KPI E++ RV A+ RR ++ Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRSQI 122 Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N R G D + + LP++E ++ L++ K + Q+ I+G+ Sbjct: 123 INERRIVIGETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIWGI 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E + V+ HI++LR + ++ F+ + + R LGY + Sbjct: 183 ESET-DPRTVDVHINRLRDRFKDNKDFNII-TIRGLGYKV 220 >gi|83718179|ref|YP_439959.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|83652004|gb|ABC36068.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 255 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 12/157 (7%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R +P+I ++ +L + D G DD + KP E+LAR+ A+ RR RA+ Sbjct: 103 RRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRR---QTGRAQ 159 Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 T G +R+ G+ L +E +L LM G +++ Q +Y + E Sbjct: 160 TVLTVGALRLDPARHQVWRGGDEVALSPKEFVLLHELMREPGAVISREQFEERLYS-WGE 218 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E N V+ HI LRK KLG D + + R +GY I Sbjct: 219 EIESNAVQVHIHNLRK----KLGHDTILTVRGVGYRI 251 >gi|296161178|ref|ZP_06843987.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295888519|gb|EFG68328.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 224 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 7/163 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA S+ P+I ++ SL + D+G DD + KP E+LAR+ A+ RRL Sbjct: 60 IDVLRSLRAKGSKAPVIILTARDSLDDRIAGLDAGADDYLVKPFEIGELLARIRAVTRRL 119 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R +G + + S+ L RE +L LM G ++++++ +Y Sbjct: 120 GDHGDARMTSGNLTLDSNTHLAVYGDTECNLTGREFALLSALMMKPGTVLSRSELERKVY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++E VE N VE I +RK KLG + + R +G+ +D Sbjct: 180 A-WEEQVESNAVEVVIHGIRK----KLGASVIRNVRGVGWLVD 217 >gi|289705441|ref|ZP_06501835.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289557826|gb|EFD51123.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 235 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 21/203 (10%) Query: 34 FEEWLQSSAREDVSAIEAFLIGKGEKVLELP---------RIIRAHSQVPLIGISDYPSL 84 FE ++ RE + A E F + LP R+ A P++ ++ Sbjct: 32 FEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGFTVTRRLRAAGRHFPVVFLTARDGT 91 Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGPIRVFSDGRDPE 141 + + G DD V KP E++AR+ A+ RR ++ A + + D + Sbjct: 92 EDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRRTASLDDDAAVLRVDDLELDDDAHEVR 151 Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 GEV L E ++L YLM N + ++K QI ++ +D + ++VES+IS LR+K+ Sbjct: 152 RGGEVVELSPTEFKLLRYLMMNPNRVLSKAQILDHVWE-YDFNGDASIVESYISYLRRKI 210 Query: 202 ----RNKLGFDPVDSKRFLGYSI 220 R K+ + +KR +GY + Sbjct: 211 DVGGREKM----IHTKRGVGYML 229 >gi|261254101|ref|ZP_05946674.1| copper-sensing two-component system response regulator CpxR [Vibrio orientalis CIP 102891] gi|260937492|gb|EEX93481.1| copper-sensing two-component system response regulator CpxR [Vibrio orientalis CIP 102891] Length = 230 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 16/119 (13%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-------ETGPIRVFSDGRDPEVQGEV 146 G DD + KP RE++AR+ AI RR + SNN+A E I+ F ++ QGE+ Sbjct: 93 GADDYLPKPFSDRELMARIRAILRRTQSSNNKAAKNSDCIEYQDIQAFPGKQEAYCQGEL 152 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201 L E +L + + + G + K + + G FD A ++ H+S LRKKL Sbjct: 153 IDLTTTEFALLAHFIQHPGDTLTKEALSLDVLGKRLAAFDRA-----IDMHVSNLRKKL 206 >gi|238923708|ref|YP_002937224.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656] gi|238875383|gb|ACR75090.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656] Length = 232 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 12/157 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQT-TLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R IR S VP++ ++ SL+T ++ +G DD + KP + E++AR+ A+ RR Sbjct: 60 IEVCRRIREKSYVPILFLTA-KSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIRRC 118 Query: 120 KVSNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 +V +N E + +++ + G L +E +IL L+++ K + Sbjct: 119 RVYDNADASDTTASSTIERCGLTLYTKCNNVSYDGRQLALTDKEYQILLLLISHPTKTFS 178 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 IF +++ N + HI LR KL G Sbjct: 179 TQNIFESVWNEPYTQFSNNTIMVHIKNLRNKLEAGCG 215 >gi|194015744|ref|ZP_03054360.1| regulatory protein VanR [Bacillus pumilus ATCC 7061] gi|194013148|gb|EDW22714.1| regulatory protein VanR [Bacillus pumilus ATCC 7061] Length = 231 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 7/150 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E + +RA S VP++ ++ S + +G DD + KP E+ ARV A RR Sbjct: 61 IETCQQMRASSNVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQLRRYT 120 Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 V + E G +RV + + + L E R+L+ LM+ R K + I Sbjct: 121 VYQEKKEQEETFLVGGKLRVSEEFNEVWKGNQQLKLSDLEYRMLKLLMSRRNKIFSAQNI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + +++G N V HI KLR K+ + Sbjct: 181 YESVWGQPYFYCSNNTVMVHIRKLRAKIED 210 >gi|167910824|ref|ZP_02497915.1| putative two component system, response regulator [Burkholderia pseudomallei 112] Length = 241 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 3/137 (2%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 + +S +P++ +++ + ++G DD V KP +E +ARV A+YRR + +E Sbjct: 72 KNYSNIPVLILTNAILESEVVAALEAGADDYVIKPPRKQEFVARVKALYRRATETRTLSE 131 Query: 128 ---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 GP R+ + + E L +E I+E L N G+ V++ ++ ++G + Sbjct: 132 LIEIGPYRIQTSEKVVYFHHEAITLSPKEYEIIELLARNIGQIVSRDKMVYQVWGRLPDE 191 Query: 185 VEENVVESHISKLRKKL 201 +++HI ++R+KL Sbjct: 192 AAFRTLDTHIYRIRRKL 208 >gi|170019594|ref|YP_001724548.1| DNA-binding transcriptional regulator BaeR [Escherichia coli ATCC 8739] gi|169754522|gb|ACA77221.1| two component transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] Length = 240 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEETDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167 I RR K + AE+ P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|111020343|ref|YP_703315.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110819873|gb|ABG95157.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 222 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 8/162 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R S VP+I ++ ++ + G DD + KP E+ AR+ + RR Sbjct: 61 LEVLRQLRQVSAVPVIILTARDDERSVVRGLRGGADDYLVKPARMSELFARIEVVRRRSM 120 Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 A TG +RV D R V G L +E +LE L+ N G V++ Q+ Sbjct: 121 AVEGGAPREVVTGDVRVDLDSRTVTVAGTEVDLTSKEFALLEILLENPGAAVSRQQLMDR 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G AV + ++ HI LR KL ++ G + + R GY Sbjct: 181 VWGDAFVAVSRS-LDVHIGTLRAKL-DRPGL--ISTIRGFGY 218 >gi|108805802|ref|YP_645739.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108767045|gb|ABG05927.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 225 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 5/179 (2%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 R DV ++ L G + V L R+ A + P+I ++ + + D G DD + KP Sbjct: 48 RPDVVVLDIMLPGM-DGVGVLRRLREAGHRTPVIMLTARDATGDKVHSLDRGADDYLTKP 106 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LAR+ A+ RR++ G + V + R+ G L RE +LE L+A Sbjct: 107 FEVEELLARMRAVLRRVE-GEEVLRVGSLTVDTSAREVRRGGRAVALTAREYDLLE-LLA 164 Query: 163 NRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G+RV ++ +I ++G V+ NVV+ ++ LR+KL + + R +GY + Sbjct: 165 RNGRRVLSREKILDRVWG-EGAGVDPNVVDVYVGYLRRKLEGPGEGRLIHTVRGVGYVL 222 >gi|91229001|ref|ZP_01262867.1| DNA-binding response regulator [Vibrio alginolyticus 12G01] gi|254230618|ref|ZP_04923975.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|262394555|ref|YP_003286409.1| two-component system response regulator QseB [Vibrio sp. Ex25] gi|91187465|gb|EAS73803.1| DNA-binding response regulator [Vibrio alginolyticus 12G01] gi|151936858|gb|EDN55759.1| response regulator receiver domain protein [Vibrio sp. Ex25] gi|262338149|gb|ACY51944.1| two-component system response regulator QseB [Vibrio sp. Ex25] Length = 219 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 78/153 (50%), Gaps = 12/153 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ +S +L ++ ++G DD + KP E++AR+ A RR S N + I Sbjct: 73 TPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPVMQIG 130 Query: 133 VFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 S D R +V QG+ L E +++ Y M N K +++T++ IY FD + N Sbjct: 131 DLSLDTRTSKVMWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEHIYKQDFDR--DSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E I ++RKK+ K+ + + R LGY ++ Sbjct: 189 TIEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217 >gi|241765175|ref|ZP_04763161.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241365180|gb|EER60041.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 221 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA + P++ ++ ++ + D+G DD + KPI E+ AR+ A+ RR Sbjct: 60 MDVLRQMRARRNTTPVLVLTARDAVPARIAGLDAGADDYLIKPIDLHELAARLRALVRRA 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S R G + + V G+ L RE +L L+ N G+ +++ Q+ +Y Sbjct: 120 HGQSETRLAAGNVVLDPAAHQVLVDGQPVDLSNREYDLLHALLLNAGRVLSREQLEQRLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E + N VE HI LR+KL L +++ R +GY I Sbjct: 180 EWGSE-INSNAVEVHIYHLRRKLGTPL----IETVRGVGYRI 216 >gi|238025565|ref|YP_002909797.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Burkholderia glumae BGR1] gi|237880230|gb|ACR32562.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Burkholderia glumae BGR1] Length = 229 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 2/132 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GP 130 VP+I ++ QT L +G DD + KP E+LAR+AA+ RR + T G Sbjct: 73 NVPVIVLTARDDEQTVLTALRAGADDYLVKPARAAEMLARIAAVARRYGIGGKAPLTLGA 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V G L ++E + Y+ + G+ +++ + + ++G+ + V+ V Sbjct: 133 YEIDIQRVRIAVNGSSVDLTQKEFDLAVYMFQSPGQLLSRDHLLNRVWGVHAD-VDTRTV 191 Query: 191 ESHISKLRKKLR 202 ++H+S+LRKKL+ Sbjct: 192 DTHVSRLRKKLQ 203 >gi|222151606|ref|YP_002560762.1| alkaline phosphatase synthesis transcriptional regulatory protein [Macrococcus caseolyticus JCSC5402] gi|222120731|dbj|BAH18066.1| alkaline phosphatase synthesis transcriptional regulatory protein [Macrococcus caseolyticus JCSC5402] Length = 237 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 87/172 (50%), Gaps = 11/172 (6%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ + +R+ +QVP++ ++ + + G DD + KP RE+ AR+ AI RR Sbjct: 62 VEVCKAVRSEKNQVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARLKAILRRS 121 Query: 120 KV--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + N G +++ + + GE+ L +E +L YL+ +G+ + + Sbjct: 122 QALRQHESEKENKEIIIGKLKILPEHFEAYRNGELIDLTPKEFELLIYLIERQGRVITRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 + ++++ ++ A + +V+ HIS LR+K+ N + + R LGY +D+ Sbjct: 182 HMLNSVWN-YEFAGDSRIVDVHISHLREKIEENPKQPQYIKTVRGLGYKLDY 232 >gi|222087598|ref|YP_002546135.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221725046|gb|ACM28202.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 218 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 15/167 (8%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R IR + VP++ ++ +++ ++ D G DD + KP E+LAR+ A+ RR Sbjct: 60 MEVLRGIRQRGNSVPVLLLTALDAVRQKVEGLDEGADDYLVKPFDLDELLARMRALIRR- 118 Query: 120 KVSNNRAETGPIRVFSDGRDPEV----QGEV-FPLPRRERRILEYLMANRGKRVAKTQIF 174 + R E+ IR DP +G+V +E +L+ LM G+ V K I Sbjct: 119 --RDGRTES-VIRCGDIEVDPSAMVARKGDVQVHTTAKEFHLLKLLMERSGRYVTKNDIE 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A+Y + VE N +E I LRK KLG D + S R +GY I+ Sbjct: 176 YALYD-AESTVESNTIEVTIYNLRK----KLGSDFIKSIRGVGYMIE 217 >gi|85058937|ref|YP_454639.1| DNA-binding transcriptional regulator BasR [Sodalis glossinidius str. 'morsitans'] gi|84779457|dbj|BAE74234.1| two-component system response regulator [Sodalis glossinidius str. 'morsitans'] Length = 222 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 7/218 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D L+++G + + E ++L + W ++ I + G+ + Sbjct: 3 ILVIEDDKLLREGLQQALEQESFACECASNLG-QSWPLLTSTTYSLIILDLGLPDGDGMT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L ++ R + VP++ ++ ++ + D G DD + KP E+LAR AI RR + Sbjct: 62 LLEKLRRQGNGVPVLILTARDAIDERVRGLDFGADDYLIKPFALSELLARSRAIIRRHQG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 VSNN I + D V G+ L +E IL LM G R+ + + +Y Sbjct: 122 VSNNLLWVDDISLDLTHHDVTVDGKAVILTPKEFAILSRLMLRAGHRIHREILHQDLYS- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +D+ N +E HI LR+ K+G + + R GY Sbjct: 181 WDDDPSSNSLEVHIHHLRQ----KIGRGRIQTLRGFGY 214 >gi|53719294|ref|YP_108280.1| putative two component system response regulator [Burkholderia pseudomallei K96243] gi|167815668|ref|ZP_02447348.1| putative two component system, response regulator [Burkholderia pseudomallei 91] gi|52209708|emb|CAH35668.1| putative two component system, response regulator [Burkholderia pseudomallei K96243] Length = 237 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 3/137 (2%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNN 124 + +S +P++ +++ + ++G DD V KP +E +ARV A+YRR + + Sbjct: 68 KNYSNIPVLILTNAILESEVVAALEAGADDYVIKPPRKQEFVARVKALYRRATETRTLSE 127 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E GP R+ + + E L +E I+E L N G+ V++ ++ ++G + Sbjct: 128 LIEIGPYRIQTSEKVVYFHHEAITLSPKEYEIIELLARNIGQIVSRDKMVYQVWGRLPDE 187 Query: 185 VEENVVESHISKLRKKL 201 +++HI ++R+KL Sbjct: 188 AAFRTLDTHIYRIRRKL 204 >gi|310818000|ref|YP_003950358.1| DNA-binding response regulator PhoP [Stigmatella aurantiaca DW4/3-1] gi|309391072|gb|ADO68531.1| DNA-binding response regulator PhoP [Stigmatella aurantiaca DW4/3-1] Length = 235 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRV-FSDGRDPEVQGEV 146 F+ G DD V KP RE+LAR+ A+ RR VS RV + R G+ Sbjct: 98 FEVGADDYVPKPYRLRELLARIRALARRGAGAPVSTEVLTFDRFRVDLASRRILNATGQA 157 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKL 205 L R E +L +L+ + GK + + QI S+++G D V+ + V++ +S LRKKL Sbjct: 158 LELTRTEFDLLVFLLRHAGKALTRDQILSSVWG-EDVVVDGHTVDNFVSNLRKKLEWTST 216 Query: 206 GFDPVDSKRFLGYSID 221 + S R +GY +D Sbjct: 217 SRFEIRSVRGVGYRLD 232 >gi|298248013|ref|ZP_06971818.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297550672|gb|EFH84538.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 5/157 (3%) Query: 67 IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +R H + +P++ ++ L + D+G DD + KP RE+ AR+ A+ RR + + Sbjct: 66 LRNHRRTMPILLLTALGELDHRVTGLDTGADDYLTKPFAFRELEARIRALLRR-ESTTKT 124 Query: 126 AETGPIRVFSDGRDPEV-QGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 A + + D R E +GE + PL +E +LEYLM + + +++T I ++ E Sbjct: 125 AALCFLDIMLDTRTHEARRGERMIPLNNKEYALLEYLMRHPRQVLSRTMIAEHVWDCETE 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ +I LR+KL D + + R GY + Sbjct: 185 HL-SNVIDVYIRYLRRKLCENHEPDVIHTIRGAGYQL 220 >gi|295097535|emb|CBK86625.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 219 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 17/225 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D L+ DG A G+S GFN F + A + +A ++ + Sbjct: 3 ILLVEDDRLIGDGIKA-----GLSKMGFNVDWFTDGKTGQAALYTAPYDAVVLDLTLPEI 57 Query: 62 ELPRIIRAHSQV----PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 + I+RA + P++ ++ +L ++ G DD + KP E+ AR+ A+ R Sbjct: 58 DGLEILRAWRESGKSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVR 117 Query: 118 RLKVSNNRAETGPIRVFSDGRD--PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R R+E +V D ++GE L +E +LE LM N G+ + + I Sbjct: 118 R-SHGQARSELRHGKVMLDPASLVATLEGETLVLKPKEFALLELLMRNAGRVLPRKAIEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y +D+ V N VE H+ LR+ KLG + + + +GY++ Sbjct: 177 KLYN-WDDDVSSNAVEVHVHHLRR----KLGSEFIRTVHGIGYTL 216 >gi|260494215|ref|ZP_05814346.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_33] gi|260198361|gb|EEW95877.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_33] Length = 227 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 5/159 (3%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 DV ++ L K K EL + R + P+I I+ S+ ++ D G +D + KP Sbjct: 50 DVILLDLMLPKKSGK--ELCQEFRKLNNTPIIIITAKDSILDKVELLDLGANDYICKPFA 107 Query: 105 HREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LAR+ R + S ++ I++ + ++ E L + E ILEY M Sbjct: 108 MEELLARIRVATRNKENSVDKQFYLEKDIKLDLSAKRVYLREEEVNLTKTEFLILEYFMK 167 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 N+G ++ +I ++G +D EE +V+ +I+ LRKK+ Sbjct: 168 NKGLSCSREKIIIGVWG-YDFDGEEKIVDVYINSLRKKI 205 >gi|271967658|ref|YP_003341854.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510833|gb|ACZ89111.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 237 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 98/211 (46%), Gaps = 21/211 (9%) Query: 30 NSLEFEEWLQSSAREDVSAIEAF------------LIGKGEKVLELPRIIRAHSQVPLIG 77 +SLE+E + A + ++A+E ++ + + + R+ A + VP++ Sbjct: 24 SSLEYEGYRVGLASDGLAALEILEREPYELVLLDVMMPRLDGLTACRRLRAAGNHVPVLM 83 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--------G 129 ++ ++ + D+G DD + KP E+LARV A+ RR ++ A G Sbjct: 84 LTARDAVGDRVSGLDAGADDYLVKPFELDELLARVRALLRRSALTAPAAADDDGGVLLHG 143 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 +R+ + R+ GE L R E +LE LM + + + + QI S ++G FD N Sbjct: 144 DLRMDTASREVTRAGEPLELTRTEYLLLELLMVHPRQVLTREQILSEVWG-FDFEPSSNS 202 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ ++ LR+K + + R +GY + Sbjct: 203 LDVYVMYLRRKTEAAGRSRLIHTVRGVGYVL 233 >gi|188588827|ref|YP_001922647.1| DNA-binding response regulator [Clostridium botulinum E3 str. Alaska E43] gi|251777844|ref|ZP_04820764.1| DNA-binding response regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499108|gb|ACD52244.1| DNA-binding response regulator [Clostridium botulinum E3 str. Alaska E43] gi|243082159|gb|EES48049.1| DNA-binding response regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 223 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 83/160 (51%), Gaps = 6/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R + +P+I ++ + L + G DD + KP + + +LAR+++I +R Sbjct: 63 ICREVRKNLDIPIIIVTSRDNEIDELMSMNLGADDFITKPYNTQILLARISSILKRTYKK 122 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N+ +E I S+G + L + E +IL YL+ N+ V++ + ++ Sbjct: 123 NDSSEILKYKDLILDLSNGS-VSYNNKYCELTKNELKILAYLIKNQNSIVSRDILMETLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D V++N + ++++LRKKL + D ++++R LGY Sbjct: 182 S-SDIFVDDNTLSVNVTRLRKKLDDIGIKDAIETRRGLGY 220 >gi|187933755|ref|YP_001887663.1| DNA-binding response regulator [Clostridium botulinum B str. Eklund 17B] gi|187721908|gb|ACD23129.1| DNA-binding response regulator [Clostridium botulinum B str. Eklund 17B] Length = 223 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 6/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR + +P+I ++ S L + G DD + KP + +LAR+++I +R Sbjct: 63 ICREIRKNLDIPIIIVTSRDSEIDELMSMNLGADDFITKPYNTEILLARISSILKRTYKK 122 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N +E I S+G L + E +IL YL+ N+ V++ + ++ Sbjct: 123 NESSEILRYKDLILDLSNGS-ISYNNNYCELTKNELKILSYLIKNQNSIVSRDILMEILW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D V++N + +I++LR+KL + D ++++R LGY Sbjct: 182 N-SDIFVDDNTLSVNITRLRRKLEDIGIKDAIETRRGLGY 220 >gi|168184125|ref|ZP_02618789.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237794198|ref|YP_002861750.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672851|gb|EDT84812.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229261611|gb|ACQ52644.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 223 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 4/160 (2%) Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L ++IR +++ VP++ I+ + + F G DD + KPI E++ RV A+ RR ++ Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRSQI 122 Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N R G D + + LP++E ++ L++ K + Q+ I+G+ Sbjct: 123 INERRIVIGETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIWGI 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E + V+ HI++LR + ++ F+ + + R LGY + Sbjct: 183 ESET-DPRTVDVHINRLRDRFKDNKDFNII-TIRGLGYKV 220 >gi|146277961|ref|YP_001168120.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145556202|gb|ABP70815.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17025] Length = 230 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 11/154 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 VP+I +S + ++G DD V KP E++ARV + RR + S+ G Sbjct: 81 VPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRARPSS----VGLTL 136 Query: 133 VFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 F D R DPE G++ L E R+L M G+ ++ Q+ ++G D V+ Sbjct: 137 EFEDIRLDPETHKVHRAGQILKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG-RDIYVD 195 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+ H+ +LRK L G DPV + R GY++ Sbjct: 196 SRTVDVHVGRLRKALCVHGGEDPVRTVRGAGYAL 229 >gi|126174714|ref|YP_001050863.1| two component transcriptional regulator [Shewanella baltica OS155] gi|153001013|ref|YP_001366694.1| two component transcriptional regulator [Shewanella baltica OS185] gi|160875726|ref|YP_001555042.1| two component transcriptional regulator [Shewanella baltica OS195] gi|125997919|gb|ABN61994.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS155] gi|151365631|gb|ABS08631.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|160861248|gb|ABX49782.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] Length = 227 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 3/154 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127 A + P++ ++ + Q ++ ++G DD + KP E++AR+ A+ RR Sbjct: 72 AGLKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPVIC 131 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 +G +++ + + E+ + E ILEYLM + + VAK ++ IYG D+ + Sbjct: 132 SGELKLDLAAKQVTLSDEIMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDP 189 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 N +E +S+LRKKL +P+ + R GY + Sbjct: 190 NTIEVMVSRLRKKLTRDGIDNPIVTIRGQGYKFN 223 >gi|307943941|ref|ZP_07659283.1| transcriptional regulatory protein TctD [Roseibium sp. TrichSKD4] gi|307772782|gb|EFO32001.1| transcriptional regulatory protein TctD [Roseibium sp. TrichSKD4] Length = 223 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 78/149 (52%), Gaps = 6/149 (4%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPI 131 P++ ++ Q + D+G DD + KP E+ ARV A+ RR K + R + G + Sbjct: 74 PVLLLTARSETQDRVKGLDAGADDYLVKPFEMEELAARVRALGRR-KATAPRQLIKLGTL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 ++ + V +PRRE +L L +G+ ++K + +YG E+ +E V+E Sbjct: 133 KLDVNALQLLHGDTVLDVPRRELVLLSALAEAQGRALSKGALLDHLYGAGSES-DEKVIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++S+LRK+L + G + +R +GYSI Sbjct: 192 VYVSRLRKRL-SSYGV-SIQVQRGIGYSI 218 >gi|261363894|ref|ZP_05976777.1| DNA-binding response regulator [Neisseria mucosa ATCC 25996] gi|288567893|gb|EFC89453.1| DNA-binding response regulator [Neisseria mucosa ATCC 25996] Length = 223 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 8/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L +I S+ P++ ++ L + L+ D G DD + KP E+ AR+ A+ RR Sbjct: 63 LTQIRHEGSKTPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLRRHSGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S G + + EV+GE P L +E +L+ LM G ++++ + IYG Sbjct: 123 SQTLLTNGALTLNPATYQVEVKGEDKPVLLSNKEFAVLQALMMRPGIILSRSDLEDKIYG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E VE N V+ I LRK KLG + + + R +G+ + Sbjct: 183 -WGEEVESNAVDFLIHALRK----KLGKEHIQNVRGVGWLV 218 >gi|170724028|ref|YP_001751716.1| DNA-binding response regulator CreB [Pseudomonas putida W619] gi|169762031|gb|ACA75347.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 226 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 3/157 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-N 123 R +R S+VP++ +S + + G DD V KP RE+ ARV AI +R+ Sbjct: 65 RQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAPRVE 124 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 AET ++ + + + L R E R+L+ L+ + ++ Q+ A+ G+ + Sbjct: 125 PPAETALFQLDTLRMLISYRSQPLSLTRHEFRLLQCLLTQPQRVFSREQLLDAL-GVASD 183 Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYS 219 E ++SHI LR KLR +P+ + R LGYS Sbjct: 184 VGYERTIDSHIKSLRAKLRQVAAHAEPIQTHRGLGYS 220 >gi|254196433|ref|ZP_04902857.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|169653176|gb|EDS85869.1| DNA-binding response regulator [Burkholderia pseudomallei S13] Length = 277 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 117 IDVLRTLRARGLALPVLILTARDAVADRVKGLDAGADDYLVKPFDLDELAARMRALIRR- 175 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + R+E+ G + + + G L RE +LE L+A G ++K+Q+ Sbjct: 176 --QSGRSESMIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 233 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 234 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 273 >gi|169350719|ref|ZP_02867657.1| hypothetical protein CLOSPI_01492 [Clostridium spiroforme DSM 1552] gi|169292582|gb|EDS74715.1| hypothetical protein CLOSPI_01492 [Clostridium spiroforme DSM 1552] Length = 223 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 3/155 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S +P+I ++ SL + ++ + G D + KP E+LAR+ R+ N Sbjct: 69 IREKSDIPVIVLTAKDSLNSKVEILEIGAYDYLCKPFELEELLARIHVQLRKSNKKTNNM 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV- 185 + + + D + ++ L R E ILE L+ N + K +I++ Y D+ + Sbjct: 129 TFKKLTLDNQIYDAIINNQLLQLTRHEYYILELLIQNPKRVFTKQEIYA--YAWNDDYLS 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + HIS +RKK+ + D + + +G+ + Sbjct: 187 DDKTINVHISNIRKKISKQTDEDYIKTVWGIGFKM 221 >gi|209547782|ref|YP_002279699.1| PhoB family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533538|gb|ACI53473.1| two component transcriptional regulator PhoB, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 227 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + +G DD V KP E++ARV A+ R Sbjct: 62 IELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLR 121 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + V + + G I + + + L E R+LE+LM++ G+ +++Q+ Sbjct: 122 RARPEVLSTVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK L D + + R GYS++ Sbjct: 182 GVWG-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226 >gi|30262585|ref|NP_844962.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527887|ref|YP_019236.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49185427|ref|YP_028679.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65319898|ref|ZP_00392857.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165868884|ref|ZP_02213544.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167632383|ref|ZP_02390710.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167637929|ref|ZP_02396208.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685270|ref|ZP_02876494.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170704823|ref|ZP_02895289.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177649729|ref|ZP_02932731.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190565375|ref|ZP_03018295.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196040384|ref|ZP_03107685.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227814590|ref|YP_002814599.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229603419|ref|YP_002866905.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254685163|ref|ZP_05149023.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722571|ref|ZP_05184359.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254737614|ref|ZP_05195317.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743205|ref|ZP_05200890.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254751929|ref|ZP_05203966.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760449|ref|ZP_05212473.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30257217|gb|AAP26448.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47503035|gb|AAT31711.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49179354|gb|AAT54730.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164715610|gb|EDR21127.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167514478|gb|EDR89845.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167532681|gb|EDR95317.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170130624|gb|EDS99485.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670630|gb|EDT21369.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172084803|gb|EDT69861.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190563402|gb|EDV17367.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196028869|gb|EDX67475.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227007754|gb|ACP17497.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229267827|gb|ACQ49464.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 235 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P++ IS + ++G DD ++KP H+ ++A++ + RR Sbjct: 65 RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSYLRRAYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 KV E + ++ + +++ + + R E +LE LM N + V++ + + ++ Sbjct: 125 PKVEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEAILLEMLMKNYPRIVSREVLLNKLW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223 + V++N + + +++RKKL+ DP+++ R +GY I W+ Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLQIKDPIETIRSVGYRLHITWD 230 >gi|325957425|ref|YP_004292837.1| response regulator [Lactobacillus acidophilus 30SC] gi|325333990|gb|ADZ07898.1| response regulator [Lactobacillus acidophilus 30SC] Length = 233 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 17/167 (10%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-- 122 R IR S VP+I ++ S D G+DD + KP E+ AR+ I RRLK + Sbjct: 69 RRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRRLKKTQE 128 Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N A T GP+++ + E L +E ++ LM + K ++ ++ + Sbjct: 129 QNVAPTSTFTFGPLKIDLVKHEFYCNDEKIYLTPKEFALMTELMQDPEKVKSRDELLDVV 188 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSI 220 +G +D + N V+ +I + +RNKLG +P + + R LGY + Sbjct: 189 WG-YDFVGQTNTVDVYI----RTIRNKLG-EPYKKLIKTVRGLGYCL 229 >gi|322389562|ref|ZP_08063112.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus parasanguinis ATCC 903] gi|321143756|gb|EFX39184.1| subtilin biosynthesis regulatory protein SpaR [Streptococcus parasanguinis ATCC 903] Length = 219 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 5/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125 IR+ P+I ++ +D SG DD + KP E+LARV A RR + ++ Sbjct: 66 IRSKVDCPIIFLTAKAMETDIVDGLLSGGDDYITKPFGVGELLARVEAHLRREQREKHSS 125 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 G IR V+ E L + E +I + L +G+ ++ QI+ I+G FD Sbjct: 126 LNLGNIRFDLSSNQVFVKEEEIHLTKSEYQISKLLAKRKGQVFSREQIYEMIFG-FDGIG 184 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + + + H+ +R K K G +P+ + +GY WN Sbjct: 185 DSSAISEHVKNIRAKFL-KFGENPISTVWGIGYK--WN 219 >gi|289450478|ref|YP_003474431.1| putative DNA-binding response regulator [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185025|gb|ADC91450.1| putative DNA-binding response regulator [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 222 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 85/165 (51%), Gaps = 4/165 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ +L+ R+ + +P+I ++ S + ++G DD + KP E++ARV A+ Sbjct: 60 GDVILKKLRMDSHTAGLPVIMVTAKTSDLDLVKGMENGADDYIKKPFSVLELMARVKALL 119 Query: 117 RRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + + V S R+ + G++ L +E ++ +++AN+G +++ + Sbjct: 120 RRTQKPSIVELQLDALTVNSAKREIAIAGKLVDLTYKEFELIYFMLANKGIVLSRDTLMD 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D + ++ HI LR+KL + G + + R +GY I Sbjct: 180 KVWGT-DHELNSRTLDMHIKTLRQKLGSYGG--RICTVRNVGYVI 221 >gi|167766491|ref|ZP_02438544.1| hypothetical protein CLOSS21_00997 [Clostridium sp. SS2/1] gi|317499514|ref|ZP_07957778.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167711900|gb|EDS22479.1| hypothetical protein CLOSS21_00997 [Clostridium sp. SS2/1] gi|316893168|gb|EFV15386.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 217 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 82/161 (50%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S +P++ ++ + + +D F + VD V KP + AR+ A+ ++ Sbjct: 59 LEVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDALIKKNY 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E + V + ++ GE + +E +L+ L+ N G+ + + QI ++ Sbjct: 119 GHLEKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKD 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL+ D + + R +GY ++ Sbjct: 179 SEEIPYDRVIDVYIKELRKKLQ----LDCITTIRNVGYKLE 215 >gi|88855871|ref|ZP_01130533.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88814738|gb|EAR24598.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 242 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 52/217 (23%), Positives = 99/217 (45%), Gaps = 28/217 (12%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-S 71 DGY +GV + L ++A E+ SA ++ E+ R +R + Sbjct: 41 DGYAVTLVTNGV-----------DALIATAHENFSAAAIDVMLPEMTGFEICRHLRKQGN 89 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSN 123 +P++ ++ +++ + DSG DD + KP E AR+ A+ RR LK+ Sbjct: 90 SLPVLLLTARDAVEDRVLGLDSGADDYLTKPFAFAEFAARIRALVRRDTAAGKATLKIGE 149 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + +R S G +P P+ +E +L L + G+ + ++ I S ++G Sbjct: 150 LALDAATVRATSAG-NP------LPMSSKEFALLWMLATHPGEALTRSTILSEVWGTTAH 202 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ NVV+ ++S LR+KL + + R +GY++ Sbjct: 203 -IDANVVDQYVSYLRRKLEPTQSGVTISTVRGVGYAL 238 >gi|87301909|ref|ZP_01084743.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] gi|87283477|gb|EAQ75432.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] Length = 234 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 11/188 (5%) Query: 39 QSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 Q SA D+ ++ L G G L++ R +R + P++ +S + + + G DD Sbjct: 47 QGSASFDLVLLDLMLPGVGG--LDVCRHLRRSDPHTPILMVSARDTETDRVLGLELGADD 104 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETGPI------RVFSDGRDPEVQGEVFPLPR 151 + KP RE++AR A+ RR + + R G I ++ D +GE L Sbjct: 105 YLVKPFGLRELVARCRALLRRSQQTIERFPVGQIIHHGDLSLYPDEFRVTREGERVNLSP 164 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPV 210 +E R++E+ M N G+ ++ Q+ ++G D V+ V+ HI LR+KL N + + Sbjct: 165 KEYRLVEFFMQNPGRVWSRNQLIDQVWGT-DYVVDTKTVDVHIRWLREKLEVNPSAPEHI 223 Query: 211 DSKRFLGY 218 + R GY Sbjct: 224 LTVRGFGY 231 >gi|330818213|ref|YP_004361918.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] gi|327370606|gb|AEA61962.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] Length = 225 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 97/218 (44%), Gaps = 5/218 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + DDG L+ +S E E ++ DV ++ L G K + Sbjct: 3 LLLVEDNEELAHWLAMTLTDDGFMLDRVSSGEAAEDALRASAYDVVLLDLNLPGMSGKTV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R+ P++ ++ ++ + +G DD + KP RE++AR+ + RR Sbjct: 63 -LRRMRERGDATPVLILTATGAVDEKVVCLGAGADDYIVKPFDARELVARIKVLARRQAP 121 Query: 122 S-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S +NR G + D V L RE +LE L+ K V+KT + ++ Sbjct: 122 SRSNRLRCGNLVYDMDRLQFAVDDVPLVLTPREHAVLEALILRAKKTVSKTTLAESVSA- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D E+ +E ++S+LRKKL + + R LGY Sbjct: 181 ADAPTSEDAIEIYVSRLRKKLEASSA--TIITLRGLGY 216 >gi|329114231|ref|ZP_08242993.1| Transcriptional activator protein CzcR [Acetobacter pomorum DM001] gi|326696307|gb|EGE47986.1| Transcriptional activator protein CzcR [Acetobacter pomorum DM001] Length = 243 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 21/186 (11%) Query: 45 DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 DV ++ L G G V+E R + ++P++ +S ++ + +G DD + KP Sbjct: 65 DVMVVDRLLPGLDGLSVIETMR--QQGIRLPVLVLSALSAVDDRVTGLKAGGDDYLTKPF 122 Query: 104 HHREILARVAAIYRRL-KVSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERR 155 E++AR+ A+ RR + + GPI RV+ DGR+ E+ LP RE R Sbjct: 123 AIEELVARIEALLRRPDDTRSTKLHLGPIDMDLIERRVWRDGREIEL------LP-REFR 175 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKR 214 +LEYLM G+ + ++ + ++ + N+V+ HI KLR+K+ + G +P ++S R Sbjct: 176 LLEYLMRRPGQVLTRSMLLEDVWQ-YRFIPRTNLVDVHIGKLRRKI-DGPGEEPLIESIR 233 Query: 215 FLGYSI 220 G+ + Sbjct: 234 GTGFRL 239 >gi|323359459|ref|YP_004225855.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275830|dbj|BAJ75975.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 218 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 98/209 (46%), Gaps = 12/209 (5%) Query: 16 IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRIIRAH-S 71 IA F G+ G+ ++ ++ + ++ L+ G + E+ R +R S Sbjct: 13 IAAFVAKGLEAAGYQTVTVDDGADALDTALSGEVDLVLLDVGLPTIDGFEVLRTLRGQGS 72 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130 +P+I ++ S + T+D D+G +D + KP E+LARV + R +N + G Sbjct: 73 ALPVIMLTARTSTRDTVDGLDAGANDYMAKPFKFDELLARVRSRLREPVTANTISISHGD 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189 + + GR + G L RE + E + + G+ +++ Q+ S ++G+ FD NV Sbjct: 133 VTLDVRGRRASIDGREVDLSAREFALAEEFLRHAGQVLSREQLLSRVWGMDFDPG--SNV 190 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ ++ + LR K G + + R GY Sbjct: 191 VDVYV----RYLRGKFGAARIATVRGAGY 215 >gi|228999603|ref|ZP_04159180.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229007150|ref|ZP_04164773.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228754098|gb|EEM03520.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228760129|gb|EEM09098.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 229 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 10/166 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----RLK 120 R IR SQVP+I ++ TL F+ G DD V KP +LAR + K Sbjct: 66 RRIRKTSQVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRILTSK 125 Query: 121 VSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +N +T I V R ++G L E IL Y M N+G + + Q+ S I Sbjct: 126 SPSNEDDTLSIHGICVHFPSRIVTIEGVDINLTHTEFEILTYFMQNQGIVLTREQLISRI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G ++ A ++ V SHI LR KL +K + + + +GY + N Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGDKAKY--ITTVVRMGYKFEGN 228 >gi|226313781|ref|YP_002773675.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226096729|dbj|BAH45171.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 224 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 82/161 (50%), Gaps = 2/161 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R H PL+ ++ + F+ G DD + KP +E++ RV A+ +R ++ Sbjct: 62 ELCRKLREHYDFPLLMLTAKGETSQKIKGFELGTDDYLVKPFDPQELVVRVKALLKRYRI 121 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++++ + G + + + + +P +E +L L + G+ +++ Q+ I+G Sbjct: 122 AASHQVQAGKLILDRKTFAVASGTKTWTIPLKEFEMLFKLASYPGQTISREQLIEQIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D E V+ HI++LR++ + + + R LGY ++ Sbjct: 181 YDFEGNERTVDVHINRLRERFPEAMYGFLIRTVRGLGYRLE 221 >gi|217970353|ref|YP_002355587.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217507680|gb|ACK54691.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 219 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A + VP++ ++ + + D+G DD + KP E+ AR+ A+ RR S Sbjct: 63 LQRLRAAANPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVDELKARIRALLRR---S 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 NRA+ G + + + +G+ L R+E +L L+ G+ + + ++ A+Y Sbjct: 120 ANRAQPVLHHGEVVLDPVNQQVSYRGQPVVLQRKEFLLLHELLTQPGRVLTRDRLQQALY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +EA E N +E HI LR+KL +L + + R +GY D Sbjct: 180 GWGEEA-ESNTLEVHIHHLRRKLFPEL----IRTVRGVGYLAD 217 >gi|109453320|gb|ABG34140.1| PhoP [Salmonella enterica subsp. diarizonae] gi|109453322|gb|ABG34141.1| PhoP [Salmonella enterica subsp. diarizonae] gi|109453326|gb|ABG34143.1| PhoP [Salmonella enterica subsp. diarizonae] Length = 213 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 2/141 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P++ ++ Q ++ SG DD V KP H E++AR+ A+ RR +++ P Sbjct: 73 LPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSGLASQVINIPPF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 +V R+ V EV L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 133 QVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 191 Query: 192 SHISKLRKKLRNKLGFDPVDS 212 + +LRKK++ + D + + Sbjct: 192 VLMGRLRKKIQAQYPHDVITT 212 >gi|114797880|ref|YP_760030.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] gi|114738054|gb|ABI76179.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] Length = 235 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 16/161 (9%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A P + +S +Q + +G +D + KP E+ ARV A+ RR AE Sbjct: 78 AGGTTPALFLSALGDVQNKVQGLRAGAEDYLGKPFAPAELAARVEALGRR----QTNAEP 133 Query: 129 GPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 P+ V G R G+ L RE R+LEYLM + G+ V +T + ++ Sbjct: 134 -PVTVLKAGDLEMNLLTRKVTRAGKKIDLQPREFRLLEYLMRHAGQVVTRTMLLEKVWDY 192 Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + NV++ HIS+LR K+ + + + R GY + Sbjct: 193 NFDP--QTNVIDVHISRLRAKIDKEFAEPLLQTVRGAGYRL 231 >gi|154247105|ref|YP_001418063.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161190|gb|ABS68406.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 223 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 10/164 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VLE R RA P++ ++ + FD+G DD V KP H E+LAR+ A+ Sbjct: 59 GISVLESWR--RAGKVTPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARLRALL 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR +++ GP+R+ + V+G L E R+L YLM + G+ V++ ++ Sbjct: 117 RRASGHASSEMTCGPVRLDTRSGRVTVEGTAVKLTSHEYRLLSYLMHHAGRVVSRGELVE 176 Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y FD + N +E + +LRK KL D + + R LGY Sbjct: 177 HLYDQDFDR--DSNTIEVFVGRLRK----KLDCDVIQTVRGLGY 214 >gi|332653383|ref|ZP_08419128.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332518529|gb|EGJ48132.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 230 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121 +R H +P+I +S ++ + G DD + KP ++E+LARV A RR+K Sbjct: 69 VRQHGTMPIIVLSAKAGVEDRVKVLRLGADDFIPKPFDNQEVLARVEAQLRRVKKFSAPP 128 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R G + + + +G L RE IL LM + + QI+ ++G Sbjct: 129 EKKQRFVCGDLCLDREEFTVTAEGNPVTLTAREFEILALLMEYPKRVFTREQIYQHVWGE 188 Query: 181 FDEAVEENVVESHISKLRKKL 201 D ++N V HIS LR KL Sbjct: 189 -DYFGDDNTVNVHISNLRSKL 208 >gi|293374869|ref|ZP_06621171.1| transcriptional regulatory protein, C-terminal domain protein [Turicibacter sanguinis PC909] gi|292646538|gb|EFF64546.1| transcriptional regulatory protein, C-terminal domain protein [Turicibacter sanguinis PC909] Length = 165 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 1/130 (0%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 +P+I ++ S +D G DD + KP E+LAR+ A+ RR + I Sbjct: 19 NIPVIFLTAKTSTMDKVDGLRLGADDYMVKPFEAIELLARIEAVLRRYGKVHKLLTYKNI 78 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V + R+ E+ G V L +E + L+ N+ +++ Q+ ++G+ D E V+ Sbjct: 79 TVNDEKREVELNGNVVYLTVKEYDLFLTLLKNKNIALSREQLIEKVWGI-DYYGETRTVD 137 Query: 192 SHISKLRKKL 201 HI+ LRKKL Sbjct: 138 MHINALRKKL 147 >gi|66046101|ref|YP_235942.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|63256808|gb|AAY37904.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] Length = 227 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 3/167 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +++ + +R+ S VP++ I+ L D G DD + KP RE++ARV AI Sbjct: 63 GRDGMDICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR S G ++V G L E R+L + G+ ++ + Sbjct: 123 RRSSSSEPHTPKG-LQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +Y V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 182 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 227 >gi|84495357|ref|ZP_00994476.1| putative two component system response regulator [Janibacter sp. HTCC2649] gi|84384850|gb|EAQ00730.1| putative two component system response regulator [Janibacter sp. HTCC2649] Length = 244 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 56/205 (27%), Positives = 99/205 (48%), Gaps = 20/205 (9%) Query: 31 SLEFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LELPRIIRA-HSQVPLIGI 78 +L +E W +A + A++A + + V +E+ R +RA + VP++ + Sbjct: 37 ALRYEGWEVRAAATGLKAVKAAREFQPDAVVLDMMLPDFDGMEVLRRMRADNDAVPVLFL 96 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVF 134 + +++ + +G DD V KP E++AR+ A+ RR V S++ G + + Sbjct: 97 TAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALMRRTTVVADESSSIIAVGDLTMD 156 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D + G L E +L YLM N + ++K QI ++ +D + NVVE +I Sbjct: 157 EDSHEVTRGGVEIHLTATEFELLRYLMRNPKRVLSKAQILDRVWN-YDFGGQANVVELYI 215 Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGY 218 S LRKK+ G P + + R +GY Sbjct: 216 SYLRKKI--DAGRTPMIHTMRGVGY 238 >gi|313895549|ref|ZP_07829105.1| putative transcriptional activator protein Irlr [Selenomonas sp. oral taxon 137 str. F0430] gi|312975675|gb|EFR41134.1| putative transcriptional activator protein Irlr [Selenomonas sp. oral taxon 137 str. F0430] Length = 225 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 3/141 (2%) Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDP 140 S++ + D+G DD + KP E+LAR+ A+ RR K+ + E G R+ Sbjct: 83 SVEDRVTGLDAGADDYLVKPFEFSELLARLRALGRRSTQKIQHEVDEIGGFRLNRTANIL 142 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 E G++ L RE ++ + L N G V + I I+GL + V N ++S++ LRKK Sbjct: 143 EKNGKIIQLSPREFQLFDLLAQNIGIVVPRDIILDRIWGL-ESDVSSNNIDSYMKMLRKK 201 Query: 201 LRNKLGFDPVDSKRFLGYSID 221 L + + + R +GY ++ Sbjct: 202 LDAASEGEAIKTIRGVGYKLE 222 >gi|326790336|ref|YP_004308157.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541100|gb|ADZ82959.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 225 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 5/162 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120 L + Q+ +I ++ L L F G +D + KP E+ AR+ I +RL Sbjct: 63 LAEVQNKKRQLGVIILTAKEDLGDKLRAFQLGAEDYLTKPFFMEELKARMYVILKRLGKM 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + + + ++ E L R +LEYLM N+ + K QIF I G Sbjct: 123 TEENTLVFKDLHLDLKQKSVWIKDEKIELNERLFHLLEYLMLNKDILLFKEQIFERICG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 +D ++E ++S LRKKL + G+D V +KR +GY ++ Sbjct: 182 YDSDASTEIIEVYMSHLRKKL-SPFGYDVYVVTKRGMGYMLE 222 >gi|238027804|ref|YP_002912035.1| Two component transcriptional regulator, winged helix family protein [Burkholderia glumae BGR1] gi|237876998|gb|ACR29331.1| Two component transcriptional regulator, winged helix family protein [Burkholderia glumae BGR1] Length = 221 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 87/161 (54%), Gaps = 8/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L R+ A S P++ ++ ++ + G DD + KP +RE+ ARV A+ RR Sbjct: 63 LRRLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGL 180 +++ G + + R E+ G+ PL R+E +LE ++A+R +RV +K ++ + ++ Sbjct: 123 ASDVLRFGSLSIDRSSRLAELDGQPLPLSRQEFALLE-ILASRPQRVFSKDELLNQLFS- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 F N VE +++++R+KL+ G D + + R +GY I Sbjct: 181 FGREPSANAVEQYVTRVRRKLQ---GSDVEIRTARGMGYQI 218 >gi|237736365|ref|ZP_04566846.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817] gi|229421407|gb|EEO36454.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817] Length = 219 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 84/161 (52%), Gaps = 7/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR SQVP+I ++ L FD D+ + KP + + ++A+V A+ RR Sbjct: 63 VCRKIREESQVPIIMLTARADESDQLFGFDLETDEYMVKPFNPKLLVAKVKALLRRDGKI 122 Query: 123 NNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++A G + + R+ ++ V L +E +L + + N+G +++ +I ++++G Sbjct: 123 IDKAPMVFGDLAIDGIKREVRLKDVVLDLTPKEYDLLYFFVENKGIALSREKILNSVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + V++HI +LRKK+ +K V + R GY + Sbjct: 182 WDYFGDSRTVDTHIKRLRKKIGDKY----VQTVRGFGYKFE 218 >gi|260590120|ref|ZP_05856033.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] gi|331084377|ref|ZP_08333481.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium 6_1_63FAA] gi|260539632|gb|EEX20201.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] gi|330401641|gb|EGG81222.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium 6_1_63FAA] Length = 229 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 108/224 (48%), Gaps = 12/224 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G +G+ ++ + + EE L+ + ++ I ++ LE Sbjct: 6 LVVDDEKLIVKGIRFSLEQEGMEVD--CAYDGEEALEKAKEKEYDMILLDIMLPKLTGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S VP+I ++ + + G DD + KP + E+ AR+ AI RR++ Sbjct: 64 VCQQIREFSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRMRKE 123 Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +G +++ +GR + G+ L +E +LE L N K ++ + + Sbjct: 124 EAKESFGKTLVSGDLKLDCEGRRVFIAGKEINLTAKEFDVLELLAKNPNKVYSRENLLNL 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218 ++G ++ + V+ HI +LR+K+ + DP V +K +GY Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKI-EAVPSDPKYVHTKWGIGY 225 >gi|90426403|ref|YP_534773.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90108417|gb|ABD90454.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB18] Length = 221 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 94/188 (50%), Gaps = 8/188 (4%) Query: 35 EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDS 93 E W + ED +AI L G L + + R + + P++ ++ S +D D+ Sbjct: 35 EAWFRGDT-EDYAAIVLDLGLPGMDGLAVLKRWRGNDRRTPVLILTARGSWAERVDGIDA 93 Query: 94 GVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152 G DD + KP E+LAR+ +I RR + + G + + +V G L Sbjct: 94 GADDYLPKPFRMEELLARLRSIVRRSAGQACSVISVGDVTLDERQMKVDVGGVPVNLSPL 153 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E R++ +L +RG+ V++ ++ IYG ++A + N +E I ++RKKL ++L +++ Sbjct: 154 EYRLIAFLFLHRGRVVSQAELSENIYG-NEDAHDSNAIEVLIGRVRKKLGSEL----IET 208 Query: 213 KRFLGYSI 220 +R GY + Sbjct: 209 RRGFGYLV 216 >gi|300857304|ref|YP_003782288.1| putative sensory transduction protein [Clostridium ljungdahlii DSM 13528] gi|300437419|gb|ADK17186.1| predicted sensory transduction protein [Clostridium ljungdahlii DSM 13528] Length = 228 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 4/145 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR + P+I ++ + + G DD + KP +E+LAR+ A+ RR Sbjct: 65 IDVLKWIRKEYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEAKEMLARIKAVLRRYS 124 Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V N E + + + + + +P +E +L YL +N+ + + Q+ + Sbjct: 125 VDNENKEVLKFNQLTIDINSYTVVYKDDEIKMPPKEFELLHYLASNKNRVFTREQLLCEV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202 +G +D + V+ H+ +LR+KL+ Sbjct: 185 WG-YDYPGDSRTVDVHVKRLREKLQ 208 >gi|282915997|ref|ZP_06323760.1| two-component system, OmpR family, response regulator [Staphylococcus aureus subsp. aureus D139] gi|283769821|ref|ZP_06342713.1| two-component system OmpR family response regulator [Staphylococcus aureus subsp. aureus H19] gi|282319945|gb|EFB50292.1| two-component system, OmpR family, response regulator [Staphylococcus aureus subsp. aureus D139] gi|283459968|gb|EFC07058.1| two-component system OmpR family response regulator [Staphylococcus aureus subsp. aureus H19] gi|283469954|emb|CAQ49165.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ST398] Length = 224 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 9/160 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121 R +R S VP++ +S + + + G DD + KP + ++A++ AIYRR+ Sbjct: 64 RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R T V +D +GE L + E ILE L+ + + V++ I +A++ Sbjct: 124 EEKRTLTWQDAVVDLSKDSIQKGEQTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 182 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218 DEA V +N + ++++LRKKL +++G D +++K GY Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKL-SEIGMDSAIETKVGKGY 220 >gi|238918413|ref|YP_002931927.1| DNA-binding transcriptional regulator BasR [Edwardsiella ictaluri 93-146] gi|238867981|gb|ACR67692.1| transcriptional regulatory protein BasR/pmrA [Edwardsiella ictaluri 93-146] Length = 220 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 6/149 (4%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIR 132 P++ ++ ++ +D D+G DD + KP E+LARV A+ RR++ + NN + I Sbjct: 74 PVLILTARDTVSDRVDGLDAGADDYLVKPFALAELLARVRALIRRMQGLCNNFLQVDDIH 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + + G+ + +E IL LM G+ + + + +Y + + + N +E Sbjct: 134 LDLSSQQVTCGGQALEITPKEFAILARLMMRAGQTINREVLQQDLYS-WQDGLSSNSLEV 192 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221 HI LR+ KLG + + R +GY ++ Sbjct: 193 HIHNLRR----KLGKKRIKTLRGVGYRLE 217 >gi|225862629|ref|YP_002748007.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225787490|gb|ACO27707.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 225 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQHAQIQYDGILWDEAKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR+KLR K+ F P+D K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLREKLR-KVNF-PIDHHLKTVYGVGYRW 220 >gi|172060288|ref|YP_001807940.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171992805|gb|ACB63724.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 226 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 7/143 (4%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRA 126 A S+VP++ +S + + +G DD V KP E++AR+ A+ RR + + + + Sbjct: 70 AGSKVPVLILSALDEVDERIRGLKAGGDDYVVKPFSFGEVVARLEALARRSQDNGFDTKL 129 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 + G + + R G L RE ++LEYLM + + V +T + I+ FD Sbjct: 130 KVGDLCIDLLSRKVARAGNAILLKPREFKLLEYLMRHAEQVVTRTMLLENIWEYHFDP-- 187 Query: 186 EENVVESHISKLRKKLRNKLGFD 208 + NV++ H+SKLR+K+ GFD Sbjct: 188 QTNVIDVHVSKLRQKIDT--GFD 208 >gi|226943977|ref|YP_002799050.1| Response regulator, two-component [Azotobacter vinelandii DJ] gi|226718904|gb|ACO78075.1| Response regulator, two-component [Azotobacter vinelandii DJ] Length = 219 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A + +P++ ++ + + D+G DD + KP E+ AR+ A+ RR S Sbjct: 63 LRRLRAAGNPLPVLVLTARDATSERIAGLDAGADDYLVKPFDVAELKARLRALLRR---S 119 Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 NR + I++ + QG L R+E +L L+A G+ + + ++ A+Y Sbjct: 120 FNRPQPALEYRGIQLDPQSQAVSYQGRDITLARKEFLLLHELLAQPGRVLTRDRLQQALY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G + E VE N +E H+ LR+K +L + + R +GY +D Sbjct: 180 G-WSEEVESNALEVHVHHLRRKFFPEL----IRTVRGVGYMVD 217 >gi|241203510|ref|YP_002974606.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857400|gb|ACS55067.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 229 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 5/133 (3%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFP 148 ++G DD + KP E++ARV A+ RR V R + + + R+ G+V Sbjct: 95 LEAGGDDYLVKPFAFSELMARVNALGRRPPVQEQRTVLKVADLELDLIRREARRAGQVIE 154 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGF 207 L RE +LE LM G+ + KT + ++ FD + +VVE+HIS+LR K+ Sbjct: 155 LQPREFTLLEVLMRGEGRVITKTMLLERVWDFHFDP--KTSVVETHISRLRAKVDKPFQV 212 Query: 208 DPVDSKRFLGYSI 220 + + R GYS+ Sbjct: 213 QLLHTVRNTGYSL 225 >gi|256833297|ref|YP_003162024.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686828|gb|ACV09721.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 237 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 15/171 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R+ VP+I ++ + + G DD V KP RE+LAR+ A+ RR Sbjct: 62 EVCRELRSRGDVPVIMLTAKDGEIDKVVGLELGADDYVTKPYSFRELLARMRAVLRRHTS 121 Query: 122 SNNRAET-------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 ++ T GP+ + + V+G+ P +E +LEYL+ N G+ + Sbjct: 122 ASASESTDFRDDDDDQVLHAGPVAMDVERHVVTVRGDSVAFPLKEFDLLEYLLRNAGRVL 181 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 + Q+ ++G D + ++ HI ++R K+ G + + R LGY Sbjct: 182 TRGQLIDRVWG-SDYVGDTKTLDVHIKRIRAKIEEDPGSPQLILTVRGLGY 231 >gi|291087543|ref|ZP_06571994.1| regulatory protein VanR [Clostridium sp. M62/1] gi|291074707|gb|EFE12071.1| regulatory protein VanR [Clostridium sp. M62/1] Length = 273 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 14/210 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V DDR +V+ I L G+ ++ ++ LE E L++ +V+ + ++ G Sbjct: 46 ILVCDDDRQIVEAIDIYLTGEGFEVIKAYDGLEALELLKT---HEVNLMIVDVMMPGLDG 102 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +R S +P+I +S + + G DD + KP + E++ARV + RR Sbjct: 103 IRTTLKVRETSSIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLRRYT 162 Query: 121 VSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N RV+ G ++ V GE+ L E IL L+ N GK + Q Sbjct: 163 QLGNMHTQSDSRVYKCGGLQINDENKEVLVDGELIKLTPIEYNILLLLVKNAGKVFSIDQ 222 Query: 173 IFSAIYGLFDEAV-EENVVESHISKLRKKL 201 I+ I+ +EA+ +N V HI +R+K+ Sbjct: 223 IYEEIWN--EEAIGADNTVAVHIRHIREKI 250 >gi|255654686|ref|ZP_05400095.1| two component transcriptional regulator [Clostridium difficile QCD-23m63] Length = 228 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 5/138 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNN 124 R +P++ I+ +L ++ D G DD + KP H +E+LARV A+ RR +++S + Sbjct: 70 RKGISIPILIITAMSTLDNRVEGLDGGADDYLVKPFHIKELLARVRALTRRPANIQLS-S 128 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + E G + D R L +E + M N ++ Q+ I+G E Sbjct: 129 KLEYGDLTFDKDSRTLSTPNNSLLLTSKETELTFVFMQNPETLFSREQLILKIWGSSSE- 187 Query: 185 VEENVVESHISKLRKKLR 202 VE V+S+IS LRK+L+ Sbjct: 188 VETGNVDSYISFLRKRLK 205 >gi|91779281|ref|YP_554489.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91691941|gb|ABE35139.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 248 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 13/172 (7%) Query: 53 LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L+ G LE+ R RA ++ P+I S S + + G DD + KP E++AR Sbjct: 56 LMLPGVDGLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVAR 115 Query: 112 VAAIYRRLK--VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANR 164 V A+ RR+ ++R E G +R+ DP G+ L RE +L Y + Sbjct: 116 VKALLRRVDALAKDSRIEAGNLRIAGLSIDPLTREAAANGKPIELTPREFDLLYYFAQHP 175 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 GK ++ + +A++G E E+ V +HI++LR K+ DP +R L Sbjct: 176 GKVFSRMDLLNAVWGYQHEGY-EHTVNTHINRLRAKIEA----DPAQPERIL 222 >gi|21222423|ref|NP_628202.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|13122184|emb|CAC32360.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] Length = 271 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 51/207 (24%), Positives = 99/207 (47%), Gaps = 20/207 (9%) Query: 31 SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78 +L +E W SA + A++ ++ + + L R+ R VP++ + Sbjct: 63 ALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGLSVLGRLRRDLPDVPVLFL 122 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134 + +++ + +G DD V KP E++AR+ + RR ++ R+++ G + + Sbjct: 123 TAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAADRRSDSVLVVGDLTLD 182 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D + G+ L E +L +LM N + ++K QI ++ +D + NVVE +I Sbjct: 183 EDSHEVTRSGDGIHLTATEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 241 Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220 S LR+K+ G +P + ++R GY I Sbjct: 242 SYLRRKI--DAGREPMIHTRRGAGYLI 266 >gi|327394208|dbj|BAK11630.1| transcriptional regulatory protein BasR/PmrA BasR [Pantoea ananatis AJ13355] Length = 228 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ R P++ ++ +++ + D+G DD + KP E+LAR+ A+ RR + Sbjct: 63 LQRLRRQKQMQPVLILTARDTIEERIAGLDAGADDYLIKPFALDELLARIRALIRRHVNQ 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++R E G + + R + + L +E IL LM G V + ++ IY F Sbjct: 123 GDSRLEVGNLSLDMTHRQIHLDDVLLDLTPKEFSILSRLMLKAGHPVHRELLYQDIYN-F 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D N +E HI LR+K+G + + R GY++ Sbjct: 182 DNEPSTNTLEVHI----HNLRDKVGKATIRTVRGFGYAL 216 >gi|325921831|ref|ZP_08183648.1| two component transcriptional regulator, winged helix family [Xanthomonas gardneri ATCC 19865] gi|325547708|gb|EGD18745.1| two component transcriptional regulator, winged helix family [Xanthomonas gardneri ATCC 19865] Length = 221 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 9/154 (5%) Query: 57 GEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 GE L + R +R + P+I ++ L + D+G DD + KP E++AR+ AI Sbjct: 56 GESGLTVIRFMRGQYDATPVIALTARGQLTDRIRGLDAGADDYLVKPFQFDELMARLRAI 115 Query: 116 YRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR S R G + V R G+ L E R+L LM G+ V K Sbjct: 116 TRR---SQGRVVPLLTQGDVCVDPSSRKVTRDGKWVALSAHEYRLLLALMERAGRVVTKD 172 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 Q+ +YG E N++ ++ +LR+KL ++L Sbjct: 173 QLEEGVYGGPSEG-GSNMIAVYVHQLRRKLGDEL 205 >gi|323340344|ref|ZP_08080603.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] gi|323092233|gb|EFZ34846.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] Length = 323 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR+ SQVP+I IS Q + G DD + KP + A+V A+ RR+ ++ Sbjct: 166 IRSFSQVPIIFISAADFDQNAVRALMIGADDYLVKPFAMDLLTAKVQAVLRRVNAVQEKS 225 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E + D + QGE L E I++ LM N + V+K ++ SA++ + + Sbjct: 226 LEKFGCELNLLTNDLDFQGESVRLTPTEGLIMKLLMLNANQTVSKKKLISALWQ-GNNFI 284 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +EN + ++S+LR KL G + + R GY ++ Sbjct: 285 DENALNVNLSRLRGKLSTLEGPLQITTVRGQGYRLE 320 >gi|317402962|gb|EFV83502.1| winged helix family Two component transcriptional regulator [Achromobacter xylosoxidans C54] Length = 219 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L R +RA + P++ + ++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 60 LTLLRELRARKDRTPVLIATARDAVSDRIAGLDAGADDYIVKPYDVDELLARMRALIRR- 118 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S RAE I + V G PL RE +LE L+A G ++ Q+ Sbjct: 119 --SAGRAEPVFEHDGITIDPQSHAATVDGTPVPLTAREWAVLEPLIARPGMIFSRAQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y + ++V N VE +I LRKKL L + + R +GY I Sbjct: 177 KLYS-WKDSVSSNAVEVYIHGLRKKLGQNL----IQNVRGVGYVI 216 >gi|306819750|ref|ZP_07453409.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552215|gb|EFM40147.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 240 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 2/160 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I V +I ++ ++ + D G +D + KP H E+ AR+ ++ RR +V Sbjct: 80 LQKIREEDKLVNVIMLTARTQIKDRVKGLDLGANDYLIKPFHFDELEARIRSLLRRKQVQ 139 Query: 123 NNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + +F + + V E L +E ILEYL+ N+G+ V + ++ ++ Sbjct: 140 EDSTISAFGLIFDTKTKTASVNDERVKLTVKETGILEYLLLNQGRYVLQEELLEHVWE-S 198 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D N V H+ LR KL++ LG + + ++ GY ID Sbjct: 199 DMNEFSNTVRVHVYGLRNKLKDALGKNIIRNEIGKGYIID 238 >gi|317127238|ref|YP_004093520.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315472186|gb|ADU28789.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 224 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 80/167 (47%), Gaps = 15/167 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 EL ++++ S P+I ++ Y + D G DD + KP RE+L+R+ ++ RR Sbjct: 63 ELCKLVKQKSDTPVIFLTAYDDEVNVVMGLDMGADDYITKPFRIRELLSRIKSVLRRYNK 122 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +K+ N + T +V+ + GE + E R+L + G+ + + Q+ Sbjct: 123 QTTIIKLHNIQINTLEGKVYKN-------GEEIIITALEYRLLLIFANHVGQVLTREQLL 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + + V +N + +I +LR+KL N + + R LGY + Sbjct: 176 ERIWDVAGDYVNDNTLTVYIKRLREKLEDNPQKPTLIKTVRGLGYKV 222 >gi|282896786|ref|ZP_06304792.1| manR (Two component Transcriptional regulator, Winged helix family) [Raphidiopsis brookii D9] gi|281198195|gb|EFA73085.1| manR (Two component Transcriptional regulator, Winged helix family) [Raphidiopsis brookii D9] Length = 236 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 5/138 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SN 123 R +P++ ++ +L + D+G DD + KP RE+LARV A+ RR V + Sbjct: 68 RQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSSVDSYTTT 127 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G + + + + QG + L +E ++L+YLM N + + QI ++ ++ Sbjct: 128 GKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYLMENPEQLLTHGQIMQHLWK-GEK 186 Query: 184 AVEENVVESHISKLRKKL 201 E NV+ + I LR+K+ Sbjct: 187 PPESNVIAALIRLLRRKI 204 >gi|229083888|ref|ZP_04216195.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228699409|gb|EEL52087.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 230 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 73/165 (44%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R IR+ S VP+I ++ + G DD + KP H E+LAR+ A+ RR Sbjct: 62 ETCRKIRSFSNVPIIMVTARDQTIDVVQGLKIGADDYITKPFHEDELLARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 SN + D V G+ L E +L + + +++ Q+ I+G Sbjct: 119 SNQHELIQYKGILWDEAKHFISVHGQELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L D E+ V+SHI LR KLR K F P+D K G W Sbjct: 179 L-DATTEDRTVDSHIRNLRDKLR-KAKF-PIDEHLKTVYGVGYRW 220 >gi|160938781|ref|ZP_02086133.1| hypothetical protein CLOBOL_03676 [Clostridium bolteae ATCC BAA-613] gi|158438480|gb|EDP16239.1| hypothetical protein CLOBOL_03676 [Clostridium bolteae ATCC BAA-613] Length = 224 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 3/130 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPL 149 F G DD + KP+ E++ R+ A+ RR ++ N R T + + D E L Sbjct: 92 FIVGTDDYMTKPVDEEEMILRIRALLRRAQIVNERRITIADVCLDYDSLTVSRGDESQTL 151 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 PR+E +L L++ GK + Q+ I+G+ ++ ++N + HI++LRK+ + F Sbjct: 152 PRKEFYLLYKLLSYPGKIFTRIQLMDEIWGMESQS-DDNTINVHINRLRKRFEDYPEF-T 209 Query: 210 VDSKRFLGYS 219 +++ R LGY Sbjct: 210 IETIRGLGYK 219 >gi|170738500|ref|YP_001767155.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168192774|gb|ACA14721.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 220 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 103/225 (45%), Gaps = 17/225 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D ++ DG A G +++ + + ++++ ++ L G G V Sbjct: 3 ILVVEDDPILSDGLRAGLALSGAAVDCVATCADADAALTASQFGAVILDLMLPDGSGLDV 62 Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R +R + P++ ++ ++ + D G DD + KP E+ AR+ A+ RR Sbjct: 63 L---RGLRGRGDRTPVVLLTARDAVADRIAGLDGGADDYLGKPFDLDELSARIRAVVRR- 118 Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ RA E G IR+ V G + RRE +L LM +K ++ Sbjct: 119 --ASGRAAAGLEHGGIRLDPGSLTVTVDGAPVTVSRREFMVLAALMERPSVLRSKAELEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E VE N VE H+ LR K+G +++ R LGY + Sbjct: 177 RLYG-WQEEVESNAVEVHV----HNLRTKIGKHAIETVRGLGYRM 216 >gi|148380092|ref|YP_001254633.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153933101|ref|YP_001384389.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153935511|ref|YP_001387926.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289576|emb|CAL83677.1| two-component system response regulator [Clostridium botulinum A str. ATCC 3502] gi|152929145|gb|ABS34645.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152931425|gb|ABS36924.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 223 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 81/157 (51%), Gaps = 8/157 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVS 122 +R S VP+I ++ S L + G DD + KP + +LAR+ I +R LK + Sbjct: 67 MRKTSDVPIIIVTSRDSEVDELISINLGADDFITKPYNTEILLARITNILKRAYGNLK-T 125 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 NN + + + L + E +IL YL+ NRG V + + ++ D Sbjct: 126 NNTLNYKDFNLNLSNATVIYKDKSLELTKNEVKILSYLINNRGNIVKRDSLMEYLWK-SD 184 Query: 183 EAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 V+++ + +I++LRKKL+ ++G +P++++R LGY Sbjct: 185 YFVDDSTLTVNINRLRKKLQ-EIGIENPIETRRGLGY 220 >gi|330950384|gb|EGH50644.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae Cit 7] Length = 227 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 3/167 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +++ + +R+ S VP++ I+ L D G DD + KP RE++ARV AI Sbjct: 63 GRDGMDICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR S G ++V G L E R+L + G+ ++ + Sbjct: 123 RRSSSSEPHTPKG-LQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +Y V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 182 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 227 >gi|256545776|ref|ZP_05473132.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170] gi|256398472|gb|EEU12093.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170] Length = 222 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S +P+I ++ ++ + G DD ++KP + + ++ A+ RR N Sbjct: 66 IREISNLPIIFLTSAADDINLINAINYGADDFISKPFSMQVLNMKIKALLRRTYDFSGKN 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 I + D ++ + L + E ILE LM N K V++ I ++ D Sbjct: 126 LDLSYKNISLIKDKMILKINDKEINLSKNEFLILEILMENSQKIVSRELIMDKLWAT-DS 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +++N + +I++LRKKL+N LG D + +K+ +GY I Sbjct: 185 FIDDNTLTVNINRLRKKLKN-LGLDDFIQTKKGVGYFI 221 >gi|218134296|ref|ZP_03463100.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC 43243] gi|217991671|gb|EEC57677.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC 43243] Length = 234 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 22/183 (12%) Query: 61 LELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L LP+I +R S VP+I ++ + + G DD + KP + E+ AR+ Sbjct: 54 LMLPKIDGIAVCQQVREFSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARM 113 Query: 113 AAIYRRLKVSNNRA----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 AI+RR S + +G +++ D R ++ G L +E ++E L + Sbjct: 114 KAIFRRSGGSESEGRQSEAARKVISSGSLKLDCDARTLQISGREIYLTAKEFDLMELLAS 173 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 N GK ++ + + ++G +D + V+ H+ +LR+K+ DP + +K +GY Sbjct: 174 NPGKVYSRESLLNTVWG-YDYPGDVRTVDVHVRRLREKVEPN-ASDPKYIQTKWGVGYYF 231 Query: 221 DWN 223 N Sbjct: 232 GQN 234 >gi|167738475|ref|ZP_02411249.1| DNA-binding response regulator [Burkholderia pseudomallei 14] Length = 237 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 3/137 (2%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 + +S +P++ +++ + ++G DD V KP +E +ARV A+YRR + +E Sbjct: 68 KNYSNIPVLILTNAILESEVVAALEAGADDYVIKPPRKQEFVARVKALYRRATETRTLSE 127 Query: 128 ---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 GP R+ + + E L +E I+E L N G+ V++ ++ ++G + Sbjct: 128 LIEIGPYRIQTSEKVVYFHHEAITLSPKEYEIIELLARNIGQIVSRDKMVYQVWGRLPDE 187 Query: 185 VEENVVESHISKLRKKL 201 +++HI ++R+KL Sbjct: 188 AAFRTLDTHIYRIRRKL 204 >gi|126736572|ref|ZP_01752312.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] gi|126713885|gb|EBA10756.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] Length = 220 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 8/135 (5%) Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF 147 +D D+G DD + KP H E+ ARV A+ RR K V D R +V + Sbjct: 88 VDGLDAGADDYLTKPFHMAELSARVRALIRR-KAGKATPVFSKDDVTFDTRTNQVMVDGV 146 Query: 148 P--LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 P L +E +L YL N G+ V++T++ IY D + N + +++LRK KL Sbjct: 147 PMNLTSQEIAVLSYLFHNSGRLVSRTELSDHIYQ-HDGDRDSNTIAVFVNRLRK----KL 201 Query: 206 GFDPVDSKRFLGYSI 220 G D +++ R GY I Sbjct: 202 GSDLIETVRGRGYVI 216 >gi|148557410|ref|YP_001264992.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148502600|gb|ABQ70854.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 225 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 10/166 (6%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ + IRA P++ +S + + +G DD + KP E++ARV A+ RR Sbjct: 60 LKILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRG 119 Query: 120 KVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E +G + + GR G L +RE RILEYL+ + G+ V ++ + + Sbjct: 120 PAIAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHV 179 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 + FD + N+++ H+S+LR+KL GFD +++ R GY + Sbjct: 180 WDYNFDP--QTNIIDQHVSRLRQKLDR--GFDTPLIETVRGTGYVV 221 >gi|306818188|ref|ZP_07451919.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|304649152|gb|EFM46446.1| response regulator [Mobiluncus mulieris ATCC 35239] Length = 229 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 98/227 (43%), Gaps = 10/227 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59 M ++D ++D + G G G + + R ++ ++ L G G + Sbjct: 1 MIYFVEDDRNIRDLVVYTLGSTGFEALGCEDDKAFRAEMAKTRPELVLLDIMLPGTDGIQ 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L + R+ + +P+I ++ + + D G DD V KP E+++RV A+ RR Sbjct: 61 ILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLRRS 120 Query: 120 KVSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S + G I + V GE L +E ++LE LM G ++ Q+ Sbjct: 121 SRSAQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRDQL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +I+G + E V+ HI LRKKL + + + R +GY + Sbjct: 181 LDSIWG-YSFHGETRTVDVHIRTLRKKLGEAAKY--IKTVRGVGYKV 224 >gi|289770395|ref|ZP_06529773.1| two component system response regulator [Streptomyces lividans TK24] gi|289700594|gb|EFD68023.1| two component system response regulator [Streptomyces lividans TK24] Length = 285 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 51/207 (24%), Positives = 99/207 (47%), Gaps = 20/207 (9%) Query: 31 SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78 +L +E W SA + A++ ++ + + L R+ R VP++ + Sbjct: 77 ALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGLSVLGRLRRDLPDVPVLFL 136 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134 + +++ + +G DD V KP E++AR+ + RR ++ R+++ G + + Sbjct: 137 TAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGAADRRSDSVLVVGDLTLD 196 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D + G+ L E +L +LM N + ++K QI ++ +D + NVVE +I Sbjct: 197 EDSHEVTRSGDGIHLTATEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 255 Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220 S LR+K+ G +P + ++R GY I Sbjct: 256 SYLRRKI--DAGREPMIHTRRGAGYLI 280 >gi|238752095|ref|ZP_04613578.1| KDP operon transcriptional regulatory protein kdpE [Yersinia rohdei ATCC 43380] gi|238709672|gb|EEQ01907.1| KDP operon transcriptional regulatory protein kdpE [Yersinia rohdei ATCC 43380] Length = 198 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 20/159 (12%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S +P+I +S S + + D+G DD ++KP E+LARV RR + + Sbjct: 40 VRQWSAIPIIVLSARSSEEDKVAALDAGADDYLSKPFGISELLARVRVALRR---HSGGS 96 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + P+ F+D R GE L E R+L L+AN GK + + Q+ + ++G Sbjct: 97 QESPVVNFADISVDLINRQITRGGEKLHLTPIEFRLLTALLANSGKVITQRQLLNQVWG- 155 Query: 181 FDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216 N VE H LR LR KL DP K L Sbjct: 156 ------PNYVE-HSHYLRIYMGHLRQKLEADPTRPKHLL 187 >gi|225569040|ref|ZP_03778065.1| hypothetical protein CLOHYLEM_05119 [Clostridium hylemonae DSM 15053] gi|225161839|gb|EEG74458.1| hypothetical protein CLOHYLEM_05119 [Clostridium hylemonae DSM 15053] Length = 230 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 14/163 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R S++P+I +S + ++ D+G DD V KP + E++ARV R+L Sbjct: 64 MEVIRNVREVSEIPIIVVSARQEEKEKIEALDAGADDYVTKPFYMGELMARVRVGMRKL- 122 Query: 121 VSNNRA-ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N RA ET + V + R V GE L E +IL L+AN+GK + I Sbjct: 123 -GNIRAGETDTVFVKEELLVDYGKRKVTVGGEEVHLTPIEYKILLLLIANQGKVLTHNYI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 I+G E ++ + ++ LR+K+ DP D + L Sbjct: 182 IREIWGYSGE-IDAGNLRVFMATLRRKIEK----DPADPRFIL 219 >gi|224539099|ref|ZP_03679638.1| hypothetical protein BACCELL_04000 [Bacteroides cellulosilyticus DSM 14838] gi|224519289|gb|EEF88394.1| hypothetical protein BACCELL_04000 [Bacteroides cellulosilyticus DSM 14838] Length = 226 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 5/173 (2%) Query: 53 LIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L+ G L++ R I++ S Q +I +S SL + G DD + KP H E+ R Sbjct: 52 LMLPGGNGLDVLRKIKSTSPQTGVIIVSAKDSLDDKVAGLKIGADDYLAKPFHLPELSMR 111 Query: 112 VAAIYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + A+ RR +N N + GPI + G+ V L + E +L +L+ NR + V+K Sbjct: 112 IFALLRRKCFTNSNTLQNGPISIDLLGKVVSVGTVTLDLTKTEYELLLFLIENRRRVVSK 171 Query: 171 TQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + G + D + N V +HI L+ K+ + D + K + G W Sbjct: 172 SALAEHLSGDMADMMNDFNFVYAHIKNLKAKMADVGMADCI--KTYYGTGYKW 222 >gi|217973027|ref|YP_002357778.1| winged helix family two component transcriptional regulator [Shewanella baltica OS223] gi|304409091|ref|ZP_07390712.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307303094|ref|ZP_07582849.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|217498162|gb|ACK46355.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] gi|304352912|gb|EFM17309.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306913454|gb|EFN43876.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|315267915|gb|ADT94768.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 224 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 3/154 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127 A + P++ ++ + Q ++ ++G DD + KP E++AR+ A+ RR Sbjct: 69 AGLKAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPVIC 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 +G +++ + + E+ + E ILEYLM + + VAK ++ IYG D+ + Sbjct: 129 SGELKLDLAAKQVTLSDEIMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDP 186 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 N +E +S+LRKKL +P+ + R GY + Sbjct: 187 NTIEVMVSRLRKKLTRDGIDNPIVTIRGQGYKFN 220 >gi|170769721|ref|ZP_02904174.1| DNA-binding response regulator BaeR [Escherichia albertii TW07627] gi|170121335|gb|EDS90266.1| DNA-binding response regulator BaeR [Escherichia albertii TW07627] Length = 240 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 78/156 (50%), Gaps = 8/156 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S VP+I ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDVPIIMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167 I RR K + AE+ P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|42779797|ref|NP_977044.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42735714|gb|AAS39652.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 225 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIKAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQHAQIQYDGILWDEAKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D+ K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220 >gi|332663776|ref|YP_004446564.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332332590|gb|AEE49691.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 224 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 4/151 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G K+LE + + + +I IS +L+ + G DD ++KP H E+ AR+ A Sbjct: 57 GDGIKILE--ELKKQQKEEGVIIISAKNALEDKVLGLQLGADDYLSKPFHLSELAARIYA 114 Query: 115 IYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR + +N N E +++ + V + L ++E +L Y + N+ + +AK + Sbjct: 115 VIRRKQFANSNLIEQNELKIDLLAKSIWVNENLVSLTKKEFDLLLYFVGNKNRVIAKGAL 174 Query: 174 FSAIYGLFDEAVE-ENVVESHISKLRKKLRN 203 + G F + ++ + V +HI L+KKL + Sbjct: 175 AEHLSGDFADMLDNHDFVYAHIKNLKKKLTD 205 >gi|329928026|ref|ZP_08282030.1| heme response regulator HssR [Paenibacillus sp. HGF5] gi|328938130|gb|EGG34527.1| heme response regulator HssR [Paenibacillus sp. HGF5] Length = 226 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 85/161 (52%), Gaps = 2/161 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R IR ++ +P++ ++ + + F+ G DD + KP E++ RV A+ +R +V Sbjct: 63 ELCREIRRNTGIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKRYQV 122 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ T G +++ + + EVF LP +E +L L + G + + ++ I+G Sbjct: 123 AASQTVTIGKLQMNRRTYEVKAGEEVFTLPLKEFELLFKLASYPGSTLPRDRLIEEIWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D E ++ H+++LR++ + + + R LGY ++ Sbjct: 182 YDFEGNERTLDVHVNRLRERFPEEKYRFRIRTVRGLGYRLE 222 >gi|323701350|ref|ZP_08113024.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533609|gb|EGB23474.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 235 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 98/200 (49%), Gaps = 20/200 (10%) Query: 29 FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH---SQVPLIGISDYPSLQ 85 +L+ EE L+ + +E I ++ LE+ R +R+H S++P++ +S + + Sbjct: 29 ITALDGEEGLRLAQQEPPDLIILDVMLPKVDGLEVCRCLRSHPSTSRLPILMVS---ARR 85 Query: 86 TTLDF---FDSGVDDVVNKPIHHREILARVAAIYRRLK----VSNNRA--ETGPIRVFSD 136 T+D + G DD + KP RE+ ARV A RR + V++N + G + + D Sbjct: 86 ETVDHVVGLEMGADDYITKPFSPRELAARVKANLRRAQYDKLVASNTSLIRVGGLEMNLD 145 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 + V+G +E ++L LM++ GK + + ++G FD V+ V+ HI Sbjct: 146 KFEVHVEGTPVNFTPKEFKLLHVLMSHPGKVFTREMLLEQVWG-FDNNVDTRTVDVHI-- 202 Query: 197 LRKKLRNKLGFDPVDSKRFL 216 + +R K+ DP + K L Sbjct: 203 --RYVRQKIEVDPGNPKYIL 220 >gi|303247778|ref|ZP_07334047.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] gi|302490862|gb|EFL50761.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] Length = 220 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 15/224 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++I+D ++ G G G++++ S + ++ D ++ L G G V Sbjct: 3 ILIIEDDQVLAAGLKVGLGLAGMTVDMVGSCDAARTALATTTFDAVVLDLMLPDGSGLDV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R + + P++ ++ + + D G DD KP E+ AR+ AI RR Sbjct: 63 LRAMR--QRGDRTPVLLLTALDEITDRVKGLDLGADDYCGKPFDLDELAARIRAIGRR-- 118 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RA I + + G+ L RRE +L LM + G +K +I Sbjct: 119 -GAGRAAPCLTAAGIALEPASLSATINGQPLTLSRREFAVLALLMEHPGAIRSKGEIEDR 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E VE N VE H+ LR K+G + +++ R LGY + Sbjct: 178 LYG-WGEEVESNTVEVHVHHLRA----KVGREKIETVRGLGYRM 216 >gi|291534209|emb|CBL07322.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Megamonas hypermegale ART12/1] Length = 231 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 108/230 (46%), Gaps = 19/230 (8%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++D V++ I G +GF N+ EF L+++ D+ ++ L G G ++L Sbjct: 6 CVEDDESVRELVIYALQSSGFEAQGFVNAEEFFPVLKNNV-PDLILLDIMLPGIDGIEIL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 + R P+I ++ S + D+G DD V KP E++AR+ A+ RR Sbjct: 65 KEVRKNPKTQHTPIIMLTARGSEYDKITGLDNGADDYVTKPFGVMELIARIKAVLRRSAK 124 Query: 119 LKVSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + V+ ++ A G + + D V E L +E +L YL+ N+ +++ + Sbjct: 125 INVAQDKATNDLSASNGLLVLNHDFHKVYVNNEEVILTLKEFELLYYLLKNKNIVISRDK 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 I ++ ++ A E V+ HI K LR+KLG +++ R +GY I Sbjct: 185 IMDEVWD-YNYAAETRTVDVHI----KTLRHKLGVASKLIETIRGVGYKI 229 >gi|289752523|ref|ZP_06511901.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis EAS054] gi|289693110|gb|EFD60539.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis EAS054] Length = 131 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 69/126 (54%), Gaps = 15/126 (11%) Query: 106 REILARVAAIYRR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160 RE++AR+ A+ RR ++S+ E+GP+R+ + V G+ LP +E +LEYL Sbjct: 10 REVIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYL 69 Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRF 215 M N G+ + + Q+ ++G D + ++ H+ K+LR+K+ DP + + R Sbjct: 70 MRNSGRVLTRGQLIDRVWG-ADYVGDTKTLDVHV----KRLRSKIEADPANPVHLVTVRG 124 Query: 216 LGYSID 221 LGY ++ Sbjct: 125 LGYKLE 130 >gi|28209958|ref|NP_780902.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28202393|gb|AAO34839.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 246 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 4/144 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 +++ + IR + P+I ++ + + G DD + KP +E+LARV A+ RR Sbjct: 83 IDVLKWIRKEHETPVIMLTAKGETFDKVLGLELGADDYMVKPFEPKELLARVKAVLRRFN 142 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 VS + + + D G+ +P +E +L YL +N+ + + Q+ + Sbjct: 143 SDNVSKEALQFNGLTIDIDSYTVIYNGKEIKMPPKEFELLYYLASNKNRVFTREQLLCEV 202 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G +D + V+ HI +LR+KL Sbjct: 203 WG-YDYPGDSRTVDVHIKRLREKL 225 >gi|94314245|ref|YP_587454.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93358097|gb|ABF12185.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] Length = 221 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 7/152 (4%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETG 129 S VP++ ++ +L+ + D+G DD + KP E+LAR+ A++RR ++++ G Sbjct: 71 SAVPVLILTARDALEDRIGGLDAGADDYLVKPFEMDELLARMRAVWRRRSGLASSVLGNG 130 Query: 130 PIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 + + R + G L RE +L+ L+A G +++ ++ IYG DE VE N Sbjct: 131 RVSLDLSTRQATLTGGAPQQLTNREFALLQALLARPGAILSRAELEERIYGWGDE-VESN 189 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 VE I LR+ KLG + + R +G+ + Sbjct: 190 AVEFLIHGLRR----KLGSTIIRNVRGVGWQV 217 >gi|119383064|ref|YP_914120.1| two component transcriptional regulator [Paracoccus denitrificans PD1222] gi|119372831|gb|ABL68424.1| two component transcriptional regulator, winged helix family [Paracoccus denitrificans PD1222] Length = 223 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 4/132 (3%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D G DD + KP E AR+ ++ RR + N+ G + + R + G+ L Sbjct: 91 LDLGADDYLIKPFDIGEFEARIRSLLRRQAGLRNSTVSFGDLVLDQTARSFLLAGQPLDL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 P RER +LE L+ GK VA+ I ++ L D+ + N +E ++S+LRK+L G Sbjct: 151 PARERGLLELLIMRAGKVVARESIVQSLTSLEDD-LSANAIEQYVSRLRKRL-APAGL-T 207 Query: 210 VDSKRFLGYSID 221 V + R +GY +D Sbjct: 208 VRTARGIGYFLD 219 >gi|34763104|ref|ZP_00144075.1| Two-component response regulator [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887238|gb|EAA24338.1| Two-component response regulator [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 227 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 5/159 (3%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 DV ++ L K K EL + R + P+I I+ S+ ++ D G +D + KP Sbjct: 50 DVVLLDLMLPKKSGK--ELCQEFRKLNNTPIIVITAKDSILDKVELLDLGANDYICKPFA 107 Query: 105 HREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LAR+ R + S ++ I++ + + E L + E ILEY M Sbjct: 108 MEELLARIRVATRNKENSVDKQFYLEKDIKLDLSAKRVYLGEEEINLTKTEFLILEYFMK 167 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 N+G ++ +I ++G +D EE +V+ +I+ LRKK+ Sbjct: 168 NKGLSCSREKIIIGVWG-YDFDGEEKIVDVYINSLRKKI 205 >gi|332992634|gb|AEF02689.1| two component transcriptional regulator [Alteromonas sp. SN2] Length = 229 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 10/206 (4%) Query: 24 VSLEGFNSLEFEEW---LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80 ++LEGF S E + + +E +AI + G L + + +R+ S VP+I ++ Sbjct: 24 LALEGFTSTVLNEGTHVVDTVKKEVPAAIILDRMLPGVDGLTICKSLRSFSMVPIIMLTA 83 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR-- 138 L ++G DD V KP RE++AR+ A+ RR N + F Sbjct: 84 RVDEIDRLIGLEAGADDYVCKPFSAREVVARIQAVLRRATQQNQTESSSEKLTFRHIELD 143 Query: 139 ----DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 + V G + L E R+L+ +M G ++ Q+ Y V ++SH+ Sbjct: 144 MSRFECAVDGNIIELTPVEFRLLKTMMTKPGVVYSRDQLMELGYD-DGRVVSNRTIDSHM 202 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSI 220 LR KL P+ + +GY + Sbjct: 203 KNLRHKLATAEHTSPIHAVYGIGYKV 228 >gi|288906017|ref|YP_003431239.1| two-component response regulator, CovR family [Streptococcus gallolyticus UCN34] gi|306832036|ref|ZP_07465191.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978984|ref|YP_004288700.1| putative two-component response regulator, CovR [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732743|emb|CBI14317.1| putative two-component response regulator, CovR family [Streptococcus gallolyticus UCN34] gi|304425962|gb|EFM29079.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178912|emb|CBZ48956.1| putative two-component response regulator, CovR [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 230 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 8/166 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + +I ++ S+ + D G DD + KP E+LARV A++RR V Sbjct: 63 EITRRLRLEKETSIIMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARVRAVFRRQDV 122 Query: 122 SNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + R + +R+ R + L +RE +L L++N + + + ++ Sbjct: 123 ESKREQDSQGKEGLLGLRLNPQNRSAVRGDDEISLTKREYDLLSVLLSNVNRVMTREELL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++++ +D +E NVV+ +I LR K+ + + R +GY I Sbjct: 183 ASVWR-YDTDIETNVVDVYIRYLRGKVDIPGKESYIQTVRGMGYII 227 >gi|83310943|ref|YP_421207.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945784|dbj|BAE50648.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 204 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 11/167 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R +R HS+VP+I +S + + G DD V KP RE++ARV A+ RR++ Sbjct: 37 EVCRRLRRHSRVPIIFLSSRDDEIDRVLGLELGGDDYVGKPFSPRELVARVKAVLRRMQP 96 Query: 121 ------VSNNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ G +R+ +G R + EV L E IL L GK ++ + Sbjct: 97 DQSPDAIAKTELRCGRLRLDLEGFRAFWDEAEVV-LTVTEFSILRTLAERPGKVFSRDGL 155 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Y L D V + ++SH+ ++R K + G PV++ LGY + Sbjct: 156 MDGAYAL-DHYVSDRTIDSHVRRVRAKFQAA-GGGPVETVHGLGYKL 200 >gi|332296523|ref|YP_004438446.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] gi|332179626|gb|AEE15315.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] Length = 230 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 12/200 (6%) Query: 32 LEFEEWLQSSAREDVSAIEAF-----------LIGKGEKVLELPRIIRAHSQVPLIGISD 80 LE E +L +A AI F L+ G E+ + ++A V +I ++ Sbjct: 24 LEHEGYLVDTADNGYEAIGLFSEKDFDLVLLDLMIPGIDGFEVCKRMKAQKDVAIIILTA 83 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP 140 +++ + D G DD V KP E++AR+ A R+ + G + + R+ Sbjct: 84 RDAVKDKVKGLDLGADDYVTKPFVIEELIARIRARLRKGTKDLEQIVVGDLVISPQTREV 143 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 + + L ++E +L+YL N GK + + I + ++G +D ENVV+ +I LR K Sbjct: 144 KRADKSVNLSKKEFDLLKYLAENVGKVLNRDTILNHVWG-YDYYGSENVVDVYIRYLRAK 202 Query: 201 LRNKLGFDPVDSKRFLGYSI 220 + + + + R +GY++ Sbjct: 203 IDDPFENKILHTVRGVGYAL 222 >gi|268609963|ref|ZP_06143690.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 233 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 18/141 (12%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVS------NNRAETGPIRVFSDGRDPEVQGEVF 147 G DD + KP E+ ARV AIYRR+ +S + E+GP + R GE Sbjct: 97 GADDYITKPFSPSELTARVDAIYRRVCMSFIKNEQQSVIESGPFTLNLKSRTVTKDGEPI 156 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV--EENVVESHISKLRKKLRNKL 205 L + E +I+E+ M N+ + + I + I+G E+ ++ +V+ +I ++R K+ Sbjct: 157 ELTQVEYQIMEFFMNNKNTALDRASILNHIWG---ESYYGDDKIVDVNIRRIRMKIEE-- 211 Query: 206 GFDPVDSKRFL---GYSIDWN 223 +P + K + GY WN Sbjct: 212 --EPSNPKYIITIWGYGYKWN 230 >gi|229133392|ref|ZP_04262220.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228650065|gb|EEL06072.1| Two-component response regulator [Bacillus cereus BDRD-ST196] Length = 233 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 27/207 (13%) Query: 18 LFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV--------------LE 62 L DD + S+ E E L++ ED AIEA + + +K +E Sbjct: 11 LIVDDDKEIRNLISVYLENEGLKTQKAED--AIEALKLLEEKKFDLIILDVMMPNMDGIE 68 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 69 VCMKIREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKY 128 Query: 121 ---VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 NN++ E G + V +D R V+G L +E IL+ L N+G ++ +I+ Sbjct: 129 NMHTDNNKSILEIGDLTVNTDTRQVWVRGTEVRLTPKEFDILKLLARNKGIVLSVAKIYE 188 Query: 176 AIYG-LFDEAVEENVVESHISKLRKKL 201 A++ F ++ +N V HI+K+R K+ Sbjct: 189 AVWKDAFYKS--DNTVMVHITKIRDKI 213 >gi|171059305|ref|YP_001791654.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170776750|gb|ACB34889.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 239 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 16/154 (10%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNR 125 + P++ ++ ++ ++ D+G DD V KPI E+ AR+ A+ RR +S N Sbjct: 72 KTPVLVLTARDAVPQRIETLDAGADDYVVKPIDLHELAARLRALVRRSHGQVQDLISVNG 131 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + P R+ + G+ L RE +L LM G+ + + Q+ + +YG + E V Sbjct: 132 VDLDP-----GAREVRLDGDPIKLSTREFDLLHALMLRPGRVLTREQLENHLYG-WGEEV 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 N VE H+ LR+KL N+ + + R +GY+ Sbjct: 186 GSNTVEVHVHHLRRKLGNQR----IRTVRGVGYA 215 >gi|251797185|ref|YP_003011916.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544811|gb|ACT01830.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 219 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 69/130 (53%), Gaps = 1/130 (0%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 +VP+I ++ +L + G DD + KP E+LAR+ A+ RR ++R G + Sbjct: 71 EVPVIFLTARNALVDKVKGLKMGADDYIVKPFEAMELLARIEAVLRRYGRKSDRLNFGGL 130 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + R + +G + L +E +L L+ NR K +++ +I ++ ++ + E V+ Sbjct: 131 EIHLEERIVKKEGVIIELTMKEYELLLLLINNRNKALSREKILELVWD-YEYSGETRTVD 189 Query: 192 SHISKLRKKL 201 HI K+RKKL Sbjct: 190 IHIQKIRKKL 199 >gi|163815964|ref|ZP_02207334.1| hypothetical protein COPEUT_02144 [Coprococcus eutactus ATCC 27759] gi|158448774|gb|EDP25769.1| hypothetical protein COPEUT_02144 [Coprococcus eutactus ATCC 27759] Length = 224 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 77/152 (50%), Gaps = 5/152 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TG 129 ++P+I ++ + + D G DD + KP E+++RV A+ RR + + + G Sbjct: 76 RIPIILVTAKTTELDKVKGLDIGADDYLTKPFGVMELISRVKALLRRSRALQDDKQLVIG 135 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I + S+ R+ V GE+ L +E +L+ LM N G + + I S ++G D E Sbjct: 136 DITLDSERREVHVGGELCELTFKEFELLKLLMVNAGIVLHRDTIMSDVWGT-DYEGESRT 194 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ HI LR+KL + + + R +GY ++ Sbjct: 195 LDMHIKTLRQKLGE--AGNMIKTVRNVGYKME 224 >gi|160941700|ref|ZP_02089027.1| hypothetical protein CLOBOL_06596 [Clostridium bolteae ATCC BAA-613] gi|158435197|gb|EDP12964.1| hypothetical protein CLOBOL_06596 [Clostridium bolteae ATCC BAA-613] Length = 228 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 88/192 (45%), Gaps = 17/192 (8%) Query: 37 WLQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 WL D + ++ L G G +L R + QVP++ ++ L+ + +SG Sbjct: 37 WLLKDGGYDAAVLDLMLPGMDGITLLREAR--KMGCQVPVLILTAKSELEDRVTGLESGA 94 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR-----VFSDGRDPEVQG--EVFP 148 D + KP +E+LA + I RR R E P V D ++G + Sbjct: 95 DYYLTKPFDMQELLAVMKTILRR------RGEMIPENLNLGNVSLSQADYTLRGPHKSIQ 148 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L ++E I+ LM NR V+K + S ++G EAVE N VE +IS LRKKL Sbjct: 149 LGKKEYDIMRILMVNRDMVVSKDTLLSKVWGNDAEAVENN-VEIYISFLRKKLDFLKADV 207 Query: 209 PVDSKRFLGYSI 220 + + R LGY I Sbjct: 208 MIVTIRKLGYRI 219 >gi|154251400|ref|YP_001412224.1| two component transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154155350|gb|ABS62567.1| two component transcriptional regulator, winged helix family [Parvibaculum lavamentivorans DS-1] Length = 225 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 5/152 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAETG 129 + P++ +S + + +G DD + KP E+LAR+ + RR R + G Sbjct: 72 RTPVLFLSALGEVDDRIKGLKAGGDDYLTKPYAFAELLARIEVLVRRANPDQVRTRLQVG 131 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 + + R G L RE R+LEYLM + G+ V +T + ++ FD + N Sbjct: 132 SLEIDLLARKVIRDGTEIDLQPREFRLLEYLMKHAGQVVTRTMLLENVWEYHFDP--QTN 189 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V++ HIS+LR K+ + + R GYS+ Sbjct: 190 VIDVHISRLRAKIDKNFEQPLLHTVRGAGYSL 221 >gi|254976959|ref|ZP_05273431.1| two-component system, response regulator [Clostridium difficile QCD-66c26] gi|255651878|ref|ZP_05398780.1| two-component system, response regulator [Clostridium difficile QCD-37x79] gi|260687162|ref|YP_003218296.1| two-component system, response regulator [Clostridium difficile R20291] gi|306520362|ref|ZP_07406709.1| two-component system, response regulator [Clostridium difficile QCD-32g58] gi|260213179|emb|CBE04640.1| two-component system, response regulator [Clostridium difficile R20291] Length = 217 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 82/161 (50%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S +P++ ++ + + +D F + VD V KP + AR+ ++ ++ Sbjct: 59 LEVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNY 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E + V + ++ GE + +E +L+ L+ N G+ + + QI ++ Sbjct: 119 GHLEKFEYNDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKD 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL+ D + + R +GY ++ Sbjct: 179 SEETPYDRVIDVYIKELRKKLQ----LDCITTIRNVGYKLE 215 >gi|330469914|ref|YP_004407657.1| winged helix family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328812885|gb|AEB47057.1| two component transcriptional regulator, winged helix family protein [Verrucosispora maris AB-18-032] Length = 236 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 13/150 (8%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R++R ++ P++ ++ + + G DD V KP E+ AR+ A+ RR Sbjct: 71 EVIRMMREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR-- 128 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRR------ERRILEYLMANRGKRVAKTQI 173 + E P R+ F+D E EV+ +R E ++L YLM N + ++K QI Sbjct: 129 --TSTGEQAPARLTFADLELDEETHEVYRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQI 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ +D ++N+VES+IS LR+K+ N Sbjct: 187 LDHVWN-YDFRGDDNIVESYISYLRRKVDN 215 >gi|297565268|ref|YP_003684240.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849717|gb|ADH62732.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 217 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 91/175 (52%), Gaps = 7/175 (4%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D+ ++ L E EL + +R A P++ ++ SL + + G DD + KP Sbjct: 44 DLIVLDVMLPEGEEAGFELAKELREAGFHQPILFLTARESLPDRVRGLEVG-DDYLAKPF 102 Query: 104 HHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163 E++AR+ A+ RR +V + GP+ V + R+ +G++ L +E ++LE + N Sbjct: 103 ALAELVARLRALARRGEVRPRVVQAGPLEVALEKREVRYRGQMVRLTAKEYQVLELFVIN 162 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G+ + ++ ++G E+ + N+++ ++ LRKKL + + +++ R LGY Sbjct: 163 PGRIFTREEVLERVWGPGFES-DSNLIDVYVKNLRKKLYDNV----IETVRGLGY 212 >gi|254501571|ref|ZP_05113722.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] gi|222437642|gb|EEE44321.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] Length = 239 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 101/229 (44%), Gaps = 16/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + ++D L D+G + + S D+ ++ + GE Sbjct: 20 LLLVDDDSRIRDLLGRLLKDNGYRVSAAANAAEARICLSGLEFDLIILDVMM--PGETGT 77 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL +R SQVP++ ++ + ++GVDD + KP +E+L R+ AI RR + Sbjct: 78 ELATSLRETSQVPILMLTARTDAPDRIAGLEAGVDDYLGKPFEPKELLLRIGAILRRGQY 137 Query: 122 SNNRAET----GPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 T GP ++ R G+ L RE++IL G V + +I Sbjct: 138 QPPTTVTEIRFGPF-CYNTSRGELKNGDSSIRLTDREKQILSIFAEQPGATVPRHKIVGD 196 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGYSIDWN 223 D + E V+ I++LR+K+ + G +PV + R +GY + + Sbjct: 197 -----DSGLGERTVDVQINRLRRKIEDDPG-NPVYLQTVRGIGYRLACD 239 >gi|164686356|ref|ZP_02210386.1| hypothetical protein CLOBAR_02794 [Clostridium bartlettii DSM 16795] gi|164601958|gb|EDQ95423.1| hypothetical protein CLOBAR_02794 [Clostridium bartlettii DSM 16795] Length = 227 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 10/136 (7%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV---- 146 + G DD + KP +E+LAR+ ++ RR ++ N+ E + D R ++ EV Sbjct: 95 LEEGADDYITKPFGIKELLARINSVLRRYNMTTNKVE--DVLTVKDIRMDLIKHEVTKKD 152 Query: 147 --FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 L +E +L+ L+ N+GK +++ + ++G ++ E V+ HI LRKK+ N Sbjct: 153 KKIDLTIKEFDLLKLLLQNKGKVLSRNFLLDKVWG-YEYFGETRTVDVHIRYLRKKIEND 211 Query: 205 LGFDPVDSKRFLGYSI 220 G +++ R +GY I Sbjct: 212 -GEKYIETIRGIGYKI 226 >gi|126649989|ref|ZP_01722222.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905] gi|126593161|gb|EAZ87123.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905] Length = 228 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 23/170 (13%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123 IR P+I ++ ++ F G DD + KP E++ARV A RR + N Sbjct: 66 IRETYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELIARVKAQLRRFTLYNQSS 125 Query: 124 ----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N + + + + R + L E IL YL +NRGK ++ ++F I+G Sbjct: 126 KPHENTIDFAGLMMNKNTRQVLLNERQLSLTPTEFSILWYLCSNRGKVISSEELFQEIWG 185 Query: 180 --LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYSID 221 F+ N V HI LR+K++ D V++ +F+ GY+I+ Sbjct: 186 EKYFN---SNNTVMVHIRHLREKMK-----DSVENPKFIKTVWGVGYTIE 227 >gi|161830121|ref|YP_001597079.1| transcriptional regulatory protein [Coxiella burnetii RSA 331] gi|161761988|gb|ABX77630.1| transcriptional regulatory protein [Coxiella burnetii RSA 331] Length = 223 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 17/226 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + DG A G +++ + + SS E I L L+ Sbjct: 4 LLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRSGLD 63 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR + P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 64 VLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR--- 120 Query: 122 SNNRAETGPIRVFSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S RA+ PI D DP ++ + + RRE +L+ L+ N G+ +++ Q+ Sbjct: 121 SKERAK--PIISHGDITLDPASHVVTLKKKEVMVARREFALLQKLLENAGRVISREQLNQ 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +YG + E ++ N +E HI LRK+ KL + + R +GY ++ Sbjct: 179 TLYG-WGENIDSNALEVHIHNLRKRFGAKL----IRTIRGVGYMVE 219 >gi|107104462|ref|ZP_01368380.1| hypothetical protein PaerPA_01005539 [Pseudomonas aeruginosa PACS2] Length = 212 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 19/192 (9%) Query: 23 GVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGKGEKVLELPRIIRAHS---QVP 74 + + G+ LE E Q+ A + D+ ++ L G +EL R ++ +P Sbjct: 5 ALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWML--PGTSGIELARRLKRDELTVDIP 62 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134 +I ++ + + G DD + KP RE++AR+ A+ RR ++ A PI V Sbjct: 63 IIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTGPGDSEA---PIEVG 119 Query: 135 SDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 DP + G+ + E R+L++ M ++ + + Q+ ++G + VEE Sbjct: 120 GLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVWG-GNVYVEERT 178 Query: 190 VESHISKLRKKL 201 V+ HI +LRK L Sbjct: 179 VDVHIRRLRKAL 190 >gi|332530601|ref|ZP_08406535.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis ATCC 19624] gi|332039938|gb|EGI76330.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis ATCC 19624] Length = 235 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 6/198 (3%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + + L A A + L+ G + + R +RA PLI ++ Sbjct: 27 EGFATTHVDNGLAVEAAVRAHAPDVILLDLMLPGLDGISVCRQLRAFCHAPLIMLTARVD 86 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSDGRDPEV 142 L + G DD + KP + RE++ARV A RR A+ G +++ Sbjct: 87 ELDRLLGLEVGADDYLCKPYNPREVVARVKAQLRRAAWGPPASAQPGTLQLDDATLRASY 146 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 G+ L E R+L L A G+ +++ Q+ ++ A+ + ++SH+ LR+KL Sbjct: 147 AGQALDLTPAEFRLLSSLAAQAGRILSRAQLLDHLHD-DGRAITDRAIDSHVRNLRRKLD 205 Query: 203 NKL-GFDPVDSKRFLGYS 219 G DP+ S +GY+ Sbjct: 206 AAAPGRDPIRSVYGVGYA 223 >gi|302670114|ref|YP_003830074.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302394587|gb|ADL33492.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 220 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 2/137 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S P+I +S L SG DD + KP ++A++ I++R +++ + Sbjct: 67 VREKSNTPVIMVSAKLGKDDKLSALISGADDYIEKPYDIDILIAKIKGIFKR-RLAIDEI 125 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G I + G+V +E +L+ LM N+G + K IFS I+G D E Sbjct: 126 TDGNITLDLVHEQIIKDGQVIEATTKEFELLKLLMENKGHTLVKHYIFSTIWG-SDSESE 184 Query: 187 ENVVESHISKLRKKLRN 203 E + HI +LR+KL + Sbjct: 185 EQTLTVHIRRLREKLED 201 >gi|296132859|ref|YP_003640106.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296031437|gb|ADG82205.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 229 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 82/172 (47%), Gaps = 11/172 (6%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 E + S R D+ ++ L GK ++ R IR ++P+I +S + + G Sbjct: 38 EQVISEYRPDLILLDVMLPGKNG--FDICREIRDKYEIPIIFLSAKGEEIDKVLGLEFGA 95 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS------DGRDPEVQGEVFPL 149 DD + KP RE++ARV A+ RR V N + +F + R +V L Sbjct: 96 DDYITKPFSPREMVARVKAVLRR--VQNRSGKKRDELIFPHLVIDLEARTVQVNNSYVDL 153 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +E IL + + GK + +I + I+G +D A E V+SHI ++R+K+ Sbjct: 154 TPKEFDILVLMARHNGKVFTREEILNRIWG-YDFAGETRAVDSHIKRIRQKI 204 >gi|295110227|emb|CBL24180.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 222 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 20/218 (9%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66 + L + Y + +G+ EG N L S D+ ++ L G G+ VL+ Sbjct: 19 KFLENNKYSVQYALNGI--EGIN-------LCKSFVPDLIILDIMLPGLNGDDVLQK--- 66 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + P+I +S +QT ++ G DD + KP E+LAR+ A +R +N Sbjct: 67 LRKFTNAPVIVVSAKTMVQTKIELLKIGADDYMTKPFDLYELLARIEANLKR--TVDNPY 124 Query: 127 ETGPIRVFSDGRDPE----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + ++ + + + G + P E ILE L+ K +K ++ +I+ Sbjct: 125 QNNNTLIYKNIKINNSLVYINGVLVPFTSTELSILELLLQYPQKIFSKQNLYESIWN-EP 183 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A +++ + +HIS +RKK+++ D + + +GY + Sbjct: 184 YAYDDDTINTHISHIRKKIKSITNEDYIQTIWGIGYKM 221 >gi|229825839|ref|ZP_04451908.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC 49176] gi|229789859|gb|EEP25973.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC 49176] Length = 232 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 9/148 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IRA S VP+I ++ + D G DD + KP E++AR+ A+ RR+ Sbjct: 62 EVCRKIRAKSNVPIILVTARGEGFEKIMGLDIGADDYIVKPFSPSEVMARLRAVLRRMVA 121 Query: 120 -KVSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + S N A I++ + D + GE L ++E + L N K + + Sbjct: 122 PESSANVANENFIKIDNLEINLDEYSLSIGGEKIALTKKEIETMWTLAENPNKVFTRDNL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 +++G FD + V+SHI +LR KL Sbjct: 182 LDSLWG-FDYFGDSRTVDSHIKRLRAKL 208 >gi|228924359|ref|ZP_04087606.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835308|gb|EEM80702.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 242 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 11/150 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 69 IEVCRKLREKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFL 128 Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V R E I + +G+ PL +E +L + +N + K+Q Sbjct: 129 VLGSEAGDREQTRIEFKEISIDMKKYTVFKEGKEIPLTAKEMELLRFFASNPEQVFTKSQ 188 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 +F ++G D +E +N V HI KLRKK+ Sbjct: 189 LFRNVWG--DNYLEDDNTVMVHIRKLRKKI 216 >gi|254501155|ref|ZP_05113306.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] gi|222437226|gb|EEE43905.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] Length = 228 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 12/160 (7%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 ++ + P++ +S + + +G DD + KP E+ ARV A+ RR K ++ Sbjct: 69 KSGNHTPVLILSALGQVDDRVTGLKAGGDDYLPKPYAFTELQARVEALARRPKSASQVET 128 Query: 128 TGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 T + R+ R +++ PL RE R+LEYLM + G+ V +T + ++ Sbjct: 129 TYTVGDLTLDRMAHSCRRGDME---IPLQPREFRLLEYLMQHAGQVVTRTMLLENVWEYH 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + NV++ HIS+LR K+ + + R GY+I Sbjct: 186 FDP--QTNVIDVHISRLRGKIDKGFDVPLLHTIRGAGYTI 223 >gi|212212388|ref|YP_002303324.1| QseB [Coxiella burnetii CbuG_Q212] gi|212010798|gb|ACJ18179.1| QseB [Coxiella burnetii CbuG_Q212] Length = 232 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 17/226 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + DG A G +++ + + SS E I L L+ Sbjct: 13 LLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRSGLD 72 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR + P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 73 VLKTIREKNDPTPVVILTARDTVDDRIKGLDTGSDDYMTKPFDLEELCARMRAMQRR--- 129 Query: 122 SNNRAETGPIRVFSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S RA+ PI D DP ++ + + RRE +L+ L+ N G+ +++ Q+ Sbjct: 130 SKERAK--PIISHGDITLDPASHVVTLKKKEVMVSRREFALLQKLLENAGRVISREQLNQ 187 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +YG + E ++ N +E HI LRK+ KL + + R +GY ++ Sbjct: 188 TLYG-WGENIDSNALEVHIHNLRKRFGAKL----IRTIRGVGYMVE 228 >gi|150019307|ref|YP_001311561.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905772|gb|ABR36605.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 229 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 3/160 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 E+ II+ + +I ++ + + D G DD + KP +E+LAR+ A I Sbjct: 69 EVCSIIKKSIKTSVIMLTALDEVDDKVKGLDIGADDYMAKPFSFKELLARINARIRNSFP 128 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ G +V + + +V LP + +L +L+ N G ++K+ I ++G Sbjct: 129 ELSDITNIGNFKVDDKAHEITYREKVLDLPPTQYNLLSFLLMNNGIALSKSLILEKVWG- 187 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E+N+VE +I LR K+ +K + + + R +GY + Sbjct: 188 YDFNGEDNIVEVYIRYLRDKIGDK-DHNIIKTVRGVGYKM 226 >gi|299536072|ref|ZP_07049389.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1] gi|298728496|gb|EFI69054.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1] Length = 233 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 64/233 (27%), Positives = 107/233 (45%), Gaps = 24/233 (10%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLI----- 54 + VL D+RA+ + I L EG N++ ++ + E + + +L+ Sbjct: 6 ILVLEDERAIAEMIEIIL------RKEGINNITLCNTIEEAKDEMNTKTFDFYLLDIMLP 59 Query: 55 -GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV- 112 G G L++ IR S P+ ++ S L F +G DD + KP + E++ARV Sbjct: 60 DGSG---LDMANSIREKSDAPIFYLTAKSSDADKLRGFMNGADDYITKPFNPLELVARVK 116 Query: 113 AAIYRRLK---VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + R +K V N T F D + EV G + R +L+YL N G+ + Sbjct: 117 VQLVRYMKKKSVPENHIFTCSRFTFDIDAAEIEVDGVKEIISGRLFHLLKYLCDNAGQVL 176 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 +K QI+ ++G D ++N V HI KLR+K+ G + + R +GY + Sbjct: 177 SKEQIYERVWG--DCLFDDNTVMVHIRKLREKIEKNPGKPTCIITVRGIGYKL 227 >gi|258512529|ref|YP_003185963.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479255|gb|ACV59574.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 239 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 50/213 (23%), Positives = 102/213 (47%), Gaps = 15/213 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNS--LEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD A ++ F G +E + + +E+ Q +++ D+ ++ L G Sbjct: 5 LVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLML--PGMDG 62 Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R ++P+I ++ + + G DD V KP RE++AR A+ RR Sbjct: 63 LEVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLRRT 122 Query: 120 KVSNNRAE-TGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + A+ T +V G + V+G++ +E +L+Y M N +++ Sbjct: 123 ESREEDAQPTSSGKVLRAGNIVMDVARHEVRVRGQLVEFTPKEFELLQYFMENPEHVLSR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 Q+ ++G + A + +V+ H+S LR+K+ + Sbjct: 183 DQLLDRVWG-YSAATDTRIVDVHVSHLREKIED 214 >gi|167760489|ref|ZP_02432616.1| hypothetical protein CLOSCI_02863 [Clostridium scindens ATCC 35704] gi|167661855|gb|EDS05985.1| hypothetical protein CLOSCI_02863 [Clostridium scindens ATCC 35704] Length = 232 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 6/151 (3%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G ++ E R+ + ++Q+P+I ++ + D G DD V KP E+ +R+ A Sbjct: 59 GTGFEICE--RVRKQNTQIPIIFLTASDEEVNVIRGLDCGGDDYVTKPFKLGELCSRIRA 116 Query: 115 IYRRLKVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + RR +S N E G I + G + G+V L E R+L L+ N + V++ Sbjct: 117 LLRRAGISAQDKTNILECGDILIDLLGSRVLLNGKVLDLTSAEYRLLCLLVRNANRIVSR 176 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 I + ++ V++N + +I +LR+K+ Sbjct: 177 EIILNDLWDDAGNFVDDNTLSVYIRRLREKV 207 >gi|188583346|ref|YP_001926791.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179346844|gb|ACB82256.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 220 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 14/170 (8%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G VL R R + + P++ ++ ++ + D G DD + KP E+ AR+ A Sbjct: 57 GSGLDVLRGLR--RRNDRTPVVLLTARDAVTDRIAGLDDGADDYLGKPFDLDELSARIRA 114 Query: 115 IYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + RR ++ RA E G IR+ V G + RRE +L LM +K Sbjct: 115 VVRR---ASGRAAALLEHGGIRLDPGSLAVTVDGVPVAVSRREVMVLAALMERPNVLRSK 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +YG + E VE N VE H+ LR K+G +++ R LGY + Sbjct: 172 VELEERLYG-WQEEVESNAVEVHVHNLRA----KIGKHAIETVRGLGYRM 216 >gi|116250319|ref|YP_766157.1| phosphate regulon two-component regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|241202937|ref|YP_002974033.1| PhoB family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115254967|emb|CAK06041.1| putative phosphate regulon two-component regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|240856827|gb|ACS54494.1| two component transcriptional regulator PhoB, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 227 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + +G DD V KP E++ARV A+ R Sbjct: 62 IELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLR 121 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + V + + G I + + + L E R+LE+LM++ G+ +++Q+ Sbjct: 122 RARPEVLSTVLKCGDIELDRETHRVHRKTREVRLGPTEFRLLEFLMSSPGRVFSRSQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK L D + + R GYS++ Sbjct: 182 GVWG-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226 >gi|326804031|ref|YP_004321849.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] gi|326650605|gb|AEA00788.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] Length = 235 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 98/224 (43%), Gaps = 22/224 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY L DG EE L+S A I L+ + LE+ R IR Sbjct: 21 LQKEGYDTLAAFDG-----------EEALESFASYQPDLIVLDLMLPKKDGLEVCREIRK 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS------- 122 S VP+I ++ + + G DD V KP +RE+ AR+ A RR +V+ Sbjct: 70 TSSVPIIMLTAKGEEIDKVLGLEMGADDYVTKPFSNRELSARIKANLRRSQVNVEAAEEK 129 Query: 123 --NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N G + + D G+ L RE +L YL + G+ + + + ++G Sbjct: 130 EDSNELNVGNLTIHEDAYYVSKNGKEVDLTHREFELLHYLSKHLGQVMTREHLLQTVWG- 188 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223 +D + V+ + +LR+K+ + + ++R +GY + N Sbjct: 189 YDYFGDVRTVDVTVRRLREKIEDTPSHPKLLMTRRGVGYYLQDN 232 >gi|325265306|ref|ZP_08132031.1| DNA-binding response regulator [Clostridium sp. D5] gi|324029485|gb|EGB90775.1| DNA-binding response regulator [Clostridium sp. D5] Length = 247 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 80/158 (50%), Gaps = 4/158 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IRA S+VP+I +S + + G DD + KP + A++ A+ RR + Sbjct: 91 IRAISKVPMIFLSSASDNMNIVMAMNMGGDDFIEKPFDLNVLTAKIQALLRRTYSFQGQL 150 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N E + + + +G+ L + + +IL+ LM N GK V + +I ++ DE Sbjct: 151 NVLEYKGVILNLNDASLTYEGKKLELTKNDFKILQLLMENAGKIVKRERIMERLWE-SDE 209 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++N + +I++LR+KL D + +K+ +GY ++ Sbjct: 210 FIDDNTLTVNITRLRRKLEGIGIADFISTKKGIGYLLE 247 >gi|320156641|ref|YP_004189020.1| two-component system response regulator QseB [Vibrio vulnificus MO6-24/O] gi|319931953|gb|ADV86817.1| two-component system response regulator QseB [Vibrio vulnificus MO6-24/O] Length = 219 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 22/219 (10%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 +L K G++ DG+ + EEW + ++ + KG I Sbjct: 19 SLEKTGWVPELSQDGI--DALYRATSEEWDAIVLDLGLPKLDGLTVLKG--------IRD 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 + P++ +S +L ++ ++G DD + KP E++AR+ A RR S N + Sbjct: 69 ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPV 126 Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 I S D R +V QG+ L E +++ Y + N K +++T++ IY FD Sbjct: 127 MQIGDLSLDTRTSKVMWQGQAVSLTALEYKVIAYFVHNADKVISRTELVEHIYKQDFDR- 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + N +E I ++RKK+ + + + R LGY ++ N Sbjct: 186 -DSNTIEVFIGRIRKKIAPNI----IKTVRGLGYQLNAN 219 >gi|312138449|ref|YP_004005785.1| two component system response regulator [Rhodococcus equi 103S] gi|311887788|emb|CBH47100.1| two component system response regulator [Rhodococcus equi 103S] Length = 231 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 11/188 (5%) Query: 23 GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII----RAHSQVPLIGI 78 G+ L GF L + + +A +A ++ VL+ ++ RA ++VP+ + Sbjct: 21 GLRLSGFTVLTASDGAVALKVVAEAAPDAVVLDMNMPVLDGTGVVTALRRAGNEVPICVL 80 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET------GPIR 132 S S+ + +SG DD + KP E++AR+ A+ RR V+ +T GP+ Sbjct: 81 SARSSVDDRIAGLESGADDYLVKPFVLAELVARIRAMLRRRSVAVAATDTDPPIVVGPLS 140 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 V GR + L +RE + E L N G +++ ++ ++G +D + NVV+ Sbjct: 141 VDLAGRRVWLGDTEITLTKREFELTEVLARNAGVVLSRERLLDLVWG-YDFVADTNVVDV 199 Query: 193 HISKLRKK 200 + LR+K Sbjct: 200 FVGYLRRK 207 >gi|308176349|ref|YP_003915755.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743812|emb|CBT74784.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 235 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 4/128 (3%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150 G DD V KP E++AR+ A+ RR + T + + D + GE+ L Sbjct: 101 GGDDYVTKPFSLDEVVARIRAVLRRTASGEDENATISVADLELDDDAHEVRRAGEIIDLS 160 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 E ++L YLM N + ++K+QI ++ +D + ++VES+IS LR+K+ + Sbjct: 161 PTEFKLLRYLMMNPNRVLSKSQILDHVWE-YDFNGDASIVESYISYLRRKVDRPEWPALI 219 Query: 211 DSKRFLGY 218 +KR +GY Sbjct: 220 QTKRGVGY 227 >gi|254787133|ref|YP_003074562.1| RstA family transcriptional regulator [Teredinibacter turnerae T7901] gi|237685183|gb|ACR12447.1| transcriptional regulatory protein RstA [Teredinibacter turnerae T7901] Length = 229 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 7/161 (4%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 D+ ++ L GK L + + IR P++ ++ S + + G DD V KP Sbjct: 47 DIVILDVMLPGKDG--LTICKEIRPRYNGPILMLTARDSDADQVSGLEYGADDYVIKPAE 104 Query: 105 HREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160 R +LAR+ A+ RR + ++ ++ G + +F R+ ++ GE+ L E +L Sbjct: 105 PRVLLARIRALLRRYQQGEDKEQSELHFGDLSIFVSSREVKLGGEIISLSSHEFDMLVTF 164 Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 GK +++ +F+ IYG + ++ ++ IS+LRKKL Sbjct: 165 AKQPGKVLSREYLFNVIYGRPYDGMDRT-IDVRISQLRKKL 204 >gi|227496770|ref|ZP_03927043.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226833723|gb|EEH66106.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 252 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 102/208 (49%), Gaps = 20/208 (9%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LELPRIIRA-HSQVPLIG 77 ++L +E W ++A V A++A + + V LE+ R IR VP++ Sbjct: 38 SALRYEGWDVTTAATGVKAVQAAQEIEPDVVVLDIMLPDFDGLEVMRRIRGRQPSVPVLF 97 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRV 133 ++ +++ + +G DD V KP E++AR+ A+ RR + ++ E G +R+ Sbjct: 98 LTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARLRALLRRSGAHAEQDDHVLEVGDLRM 157 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D + L E +L YLM N + ++K QI ++ +D ++N+VE + Sbjct: 158 DEDSHEVWRGDTEIHLTATEFELLCYLMRNPRRVLSKPQILDRVWN-YDFGGQDNIVELY 216 Query: 194 ISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 IS LR+K+ G +P + + R +GY + Sbjct: 217 ISYLRRKIDK--GREPMIHTMRGVGYVL 242 >gi|153008102|ref|YP_001369317.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|239833192|ref|ZP_04681521.1| phosphate regulon transcriptional regulatory protein PhoB [Ochrobactrum intermedium LMG 3301] gi|151559990|gb|ABS13488.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] gi|239825459|gb|EEQ97027.1| phosphate regulon transcriptional regulatory protein PhoB [Ochrobactrum intermedium LMG 3301] Length = 228 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 20/171 (11%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + G DD V KP E+LARV A+ R Sbjct: 64 IELCRRLRQWPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 123 Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R LKV + + RV+ ++ EV+ L E R+LEY M + G+ Sbjct: 124 RSNPSILSHVLKVGDLVLDRQQHRVYR--KEKEVR-----LGPTEFRLLEYFMMSPGRVF 176 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +++Q+ ++G D V++ V+ H+ +LRK + DP+ + R GYS Sbjct: 177 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKAINVGRALDPIRTVRGAGYS 226 >gi|150016917|ref|YP_001309171.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903382|gb|ABR34215.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 225 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 26/174 (14%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 EL +++R P+I ++ + D G DD + KP RE+++R+ ++ RR Sbjct: 61 ELCKLVREKDDTPVIFLTACDDEVNVVMGLDIGADDYITKPFRIRELISRIRSVIRRYGK 120 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L+++N R T +V+ + D E+ L E R+L N G+ +++ Sbjct: 121 DSSSKAILELNNIRINTLDAKVYKN--DAEIT-----LTALEYRLLLIFANNPGQVLSRN 173 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220 QI I+ + + V +N + +I ++R+KL + DP + + R LGY + Sbjct: 174 QILEGIWDVAGDFVNDNTLTVYIKRIREKLED----DPQKPTIIKTVRGLGYKV 223 >gi|332528949|ref|ZP_08404916.1| two component system regulatory protein [Hylemonella gracilis ATCC 19624] gi|332041610|gb|EGI77969.1| two component system regulatory protein [Hylemonella gracilis ATCC 19624] Length = 233 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 24/192 (12%) Query: 34 FEEWLQSSAREDVSAIEAFLIGKGEKVL------------ELPRIIRAHSQVPLIGISDY 81 +E L +S RE ++A L +G +L E+ R +RA SQVP+I +S Sbjct: 31 YEVTLAASGREGLAA----LADRGADLLILDIGLPDIDGHEVLRELRAWSQVPVIMLSVR 86 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGR 138 + D G +D V KP +E++AR+ + R+ +K N + G +R+ R Sbjct: 87 AGESEKVMALDEGANDYVTKPFGTQELMARIRVLLRQQADVKHDNALFDDGHLRIDLARR 146 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 + + GE+ L R+E +L L+ + G+ V + QI ++G V ++ L Sbjct: 147 EVRLDGELLALGRKEYALLALLLKHAGRVVTQPQILREVWG-----VTHQDDTHYVRILV 201 Query: 199 KKLRNKLGFDPV 210 KLR KLG D V Sbjct: 202 GKLRQKLGDDAV 213 >gi|297201268|ref|ZP_06918665.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197712870|gb|EDY56904.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 228 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 14/169 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R +R VP+I IS + + G DD V KP RE++AR+ A+ RR + Sbjct: 58 LDVCRALRERGDVPIIVISARSDETDRVVGLELGADDYVTKPFGVREVIARIRAVMRRAQ 117 Query: 121 VSNNRAETGP----IRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A GP R+ D + V+ GE PL +E +L +L G +++ QI Sbjct: 118 PRTEVAAAGPDTYGSRLSIDRKAARVRLDGEEVPLAPKEYDLLAFLTEEPGALMSREQIM 177 Query: 175 SAIY--GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++ F ++ H++ LR+KL + + V R +G+ ++ Sbjct: 178 EAVWDANWFGPT---KTLDVHVAALRRKLAGAVVIEAV---RGVGFRLE 220 >gi|197210923|gb|ACH48387.1| CpxR [Listonella anguillarum] Length = 176 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 15/138 (10%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-----ETGPIRVFSDGRDPEVQGE 145 + G DD + KP RE+LAR+ AI RR + SN E I+V+ ++ QG+ Sbjct: 38 LELGADDYLPKPFSDRELLARIRAILRRTQTSNGTKHNEVIECQDIQVYPSKQEAYCQGQ 97 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201 + L E +L + + N G+ + K + + G FD A ++ H+S LRKKL Sbjct: 98 LLDLTTTEFALLTHFVQNPGETLTKEALSLDVLGKRLAAFDRA-----IDMHVSNLRKKL 152 Query: 202 RNKL-GFDPVDSKRFLGY 218 ++ G + + R GY Sbjct: 153 PERVDGKSRIKTLRGRGY 170 >gi|86751461|ref|YP_487957.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86574489|gb|ABD09046.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] Length = 219 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 15/224 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A++ DG A G S++ + E + + A SA+ ++ L Sbjct: 3 ILVVEDDAMIADGIRAGLTLAGASIDCVANCE--DAAAALAANTFSAVVLDVMLPDGSGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +RA P++ ++ + + DSG DD + KP E+ AR+ AI + Sbjct: 61 DLLRRLRAGGDATPVLLLTALDEVGDRIAGLDSGADDHLGKPFDLDELGARLRAII---R 117 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + RA T G IR+F + + G PL RRE +L LM G ++ ++ Sbjct: 118 RRDGRAATCLEHGAIRLFPAESNATLDGAPVPLSRREFAVLHALMERPGVIRSRGELEER 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG DE V+ N VE HI LR KLG +++ R +GY I Sbjct: 178 LYGWGDE-VDSNAVEVHIHNLRA----KLGRAAIETVRGVGYRI 216 >gi|87122181|ref|ZP_01078064.1| Two component response regulator [Marinomonas sp. MED121] gi|86162501|gb|EAQ63783.1| Two component response regulator [Marinomonas sp. MED121] Length = 226 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 20/221 (9%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK---GEKVLELPRIIRA 69 D +A F + G+ E+ Q + V +A ++ + G L L + +RA Sbjct: 9 DKEVAQFIGSSLQQIGYVVDRCEDGKQGLLQASVETYDAIILDRMLPGLDGLNLLKTLRA 68 Query: 70 H-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 S VP++ +S + ++ +G DD + KP E+ AR+ ++RR N E+ Sbjct: 69 TGSNVPILLLSAMADVSHRVEGLQAGADDYLTKPFAFSELHARLEVMFRR-----NTHES 123 Query: 129 GPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G ++ + + L RE R+LEYL+ N+ + V +T + +++ Sbjct: 124 GEQTSLHCADLSLNLLTQEAKRAETLISLQPREYRLLEYLLRNQDRVVTRTMLLESVWDY 183 Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + NV++ HIS+LR K+ + + R GY I Sbjct: 184 HFDP--QTNVIDVHISRLRNKIDKPFSQVLIHTIRGRGYVI 222 >gi|150392407|ref|YP_001322456.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149952269|gb|ABR50797.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 218 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 1/130 (0%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 +P+I ++ +L + G DD + KP E+LAR+ A+ RR + S N Sbjct: 70 NIPVIFLTAMGNLSDRVKGLKLGADDYIVKPFETIELLARIEAVLRRTQRSLNIFSLDST 129 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V + R V G+ L RE +LE L+ NR +++ ++ + +D E V+ Sbjct: 130 VVNLESRVVTVNGDEIELTLREYELLEILIKNRNIALSREKLLKLAWE-YDYFGETRTVD 188 Query: 192 SHISKLRKKL 201 HI KLRKKL Sbjct: 189 VHIQKLRKKL 198 >gi|125974418|ref|YP_001038328.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005869|ref|ZP_05430817.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418944|ref|ZP_06249962.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125714643|gb|ABN53135.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255990173|gb|EEU00307.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407401|gb|EFB37661.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316941557|gb|ADU75591.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 228 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 71/141 (50%), Gaps = 3/141 (2%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ R H ++ +I ++ + + G DD + KP + E++AR+ A+ RR +N Sbjct: 67 RVSRQHPEISIIMVTARGEDVDKIRGLELGADDYIIKPFNPMELIARIKAVIRRTNKPDN 126 Query: 125 RAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 E GP+R+ + R G V L RE +L+ + N K + + +I + ++G D Sbjct: 127 SNEVVIGPLRIDYNCRQVYKNGVVLDLTPREFCLLKVFVNNLNKALTRDEILNWVWG-ED 185 Query: 183 EAVEENVVESHISKLRKKLRN 203 + V+ H+ +LR+K+ + Sbjct: 186 YIGDTKTVDVHVRRLREKIED 206 >gi|269792328|ref|YP_003317232.1| two component transcriptional regulator, winged helix family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099963|gb|ACZ18950.1| two component transcriptional regulator, winged helix family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 226 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 4/132 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGP 130 VP+I ++ S++ + + G DD + KP +E++ARV A+ RR R+ + GP Sbjct: 73 VPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRR-SGDQRRSILKCGP 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + R+ V PL RRE ILE LM + ++ +I + ++ + NVV Sbjct: 132 LTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVWQKEYDGT-SNVV 190 Query: 191 ESHISKLRKKLR 202 + HI LR KLR Sbjct: 191 DVHIKYLRDKLR 202 >gi|213610069|ref|ZP_03369895.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 215 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 106/215 (49%), Gaps = 19/215 (8%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPR 65 ++ALV++G F D V F+ L + L S ++ A+ I G LE+ + Sbjct: 17 EKALVQNG----FAVDCV----FDGLAADHLLHS----EMYALMVLDINMPGMDGLEVVQ 64 Query: 66 IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 +R Q +P++ ++ ++ + + G DD + KP E+ AR+ A+ RR + Sbjct: 65 RLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSAGLVH 124 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + +F D +QG+ L RE+ +L LM R + V++ Q+F ++ L DE Sbjct: 125 EVQQLGELIFHDEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFSLNDEV 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 E+ +E +I +LRKKL+ G D + + R LGY Sbjct: 185 SPES-IELYIHRLRKKLQ---GSDVRITTLRGLGY 215 >gi|167758455|ref|ZP_02430582.1| hypothetical protein CLOSCI_00795 [Clostridium scindens ATCC 35704] gi|167664352|gb|EDS08482.1| hypothetical protein CLOSCI_00795 [Clostridium scindens ATCC 35704] Length = 219 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SN 123 IR S+VP+I IS + + G D+ + KP + A+V A+ RR S Sbjct: 62 IRRLSKVPIIFISSAGDNMNIVMAMNMGGDEFIEKPFDLNVVTAKVQAMLRRTYAFHGSA 121 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N E + + QGE L + E +I + L+ N GK V + + + ++ DE Sbjct: 122 NIIEHNGLLLNLGDASLSYQGEKIELTKNEFKIFQTLLENAGKIVPRDDLITRLWE-SDE 180 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++EN + +I++LRKKL D + +K+ +GY + Sbjct: 181 FIDENTLTVNIARLRKKLGIAGLEDWIVTKKGIGYMV 217 >gi|302554205|ref|ZP_07306547.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302471823|gb|EFL34916.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 219 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 14/159 (8%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A +VP++ ++ + D+G DD + KP + ++AR+ A+ RR V A Sbjct: 66 AGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRGVG---AGA 122 Query: 129 GPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 P+ V D + VF L +E +LE+L+ G+ V+K++I ++ Sbjct: 123 SPVHVHGDLKVDTAARRVFLGDDEIALTAKEFSVLEHLVLRAGEVVSKSEILEHVWDFAY 182 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E + N+VE ++S LR+KLR L + + R GY ++ Sbjct: 183 EG-DPNIVEVYVSTLRRKLRAGL----IRTVRGAGYRLE 216 >gi|300704050|ref|YP_003745652.1| response regulator, chey family [Ralstonia solanacearum CFBP2957] gi|299071713|emb|CBJ43037.1| putative response regulator, CheY family [Ralstonia solanacearum CFBP2957] Length = 232 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPI 131 +P++ ++ + +++ + + G DD + KP E+ AR A+ RR + + GP+ Sbjct: 73 LPVMILTAHGAVEERVRGLNLGADDYLTKPFDLTEVEARARALIRRSHGHERTQLQCGPL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + GE L RER +LE L+ G+ V K I I+G+ +E+V + +E Sbjct: 133 HYDGTSGAFALHGEPLALTGRERAVLEVLVLRDGRAVNKAAISEKIFGI-NESVNADAIE 191 Query: 192 SHISKLRKKL 201 ++ +LRKKL Sbjct: 192 IYVHRLRKKL 201 >gi|290475966|ref|YP_003468861.1| response regulator in two-component regulatory system with QseC, regulates flagella and motility by quorum sensing (OmpR family) [Xenorhabdus bovienii SS-2004] gi|289175294|emb|CBJ82097.1| response regulator in two-component regulatory system with QseC, regulates flagella and motility by quorum sensing (OmpR family) [Xenorhabdus bovienii SS-2004] Length = 221 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 83/163 (50%), Gaps = 7/163 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ + +P++ ++ + + +SG DD V KP E+ AR+ A+ RR + + Sbjct: 63 LSRLRKRGQNLPVLLLTAKVDVADRVKGLNSGADDYVTKPFDFEELEARIRALLRRGMGL 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + V+ D + + L RE +L L RG+ V+K Q+F ++ L Sbjct: 123 PLGIQQFGSL-VYEDAGYFLLDNQPLALTPREFSVLTTLFHRRGRPVSKQQLFEQVFSLS 181 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDWN 223 DEA ++ +E ++ +LRKKL N +G + + R LGY ++ Sbjct: 182 DEANPQS-IELYVHRLRKKLFNSDVG---ICTLRGLGYRLELQ 220 >gi|255326659|ref|ZP_05367735.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Rothia mucilaginosa ATCC 25296] gi|283457339|ref|YP_003361914.1| response regulator [Rothia mucilaginosa DY-18] gi|255295876|gb|EET75217.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Rothia mucilaginosa ATCC 25296] gi|283133329|dbj|BAI64094.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 234 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 97/193 (50%), Gaps = 10/193 (5%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSG 94 E L+ + E+ I ++ G E+ R +R + + P++ ++ + + + +G Sbjct: 39 EALEKAHAENPDLIVLDVMMPGMDGFEVTRRLRENGTTTPVLFLTAKDATEDKVTGLGAG 98 Query: 95 VDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS-----DGRDPEVQGEVFPL 149 DD V KP E++AR+ AI RR + S + +RV + D + + E L Sbjct: 99 GDDYVTKPFSLDEVIARIRAILRRSR-SVQEEDDAVLRVDALTLNVDTHEVFLGDEEIDL 157 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFD 208 E +L YLM N + ++K QI ++ +D + ++VES+IS LR+K+ N+ + Sbjct: 158 SPTEFNLLHYLMLNANRVLSKAQILDHVWE-YDFNGDSSIVESYISYLRRKIDNNRENHE 216 Query: 209 P-VDSKRFLGYSI 220 P + +KR +GY I Sbjct: 217 PLIHTKRGVGYMI 229 >gi|210611403|ref|ZP_03288897.1| hypothetical protein CLONEX_01087 [Clostridium nexile DSM 1787] gi|210151995|gb|EEA83002.1| hypothetical protein CLONEX_01087 [Clostridium nexile DSM 1787] Length = 217 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 82/161 (50%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S +P++ ++ + + +D F + VD V KP + AR+ ++ ++ Sbjct: 59 LEVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNY 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E + V + ++ GE + +E +L+ L+ N G+ + + QI ++ Sbjct: 119 GHIEKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNSGQVLTRMQIIDYVWKD 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKLR D + + R +GY ++ Sbjct: 179 SEEPPYDRVIDVYIKELRKKLR----LDCITTIRNVGYKLE 215 >gi|159899908|ref|YP_001546155.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892947|gb|ABX06027.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 227 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 85/171 (49%), Gaps = 16/171 (9%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA S VP++ ++ S + D G DD +NKP R + ARV A+ RR V Sbjct: 61 EVCRRIRAQSIVPVMLLTVRNSEDDLIRGLDGGADDYLNKPFSPRTLTARVRALLRR--V 118 Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R + G + + +D + +G F L RE R+L+YL+AN G+ V+ Q+ + Sbjct: 119 GGERPTPLQQGDLVLDTDRQSVSREGLGFVALTNREFRLLQYLLANAGRVVSNEQVTIHV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSIDWN 223 +G + + + + +L +LR K+ +P + + +GY + N Sbjct: 179 WG--HHGIGDRTL---LKQLVHRLRQKIEPNPTEPQYLVTIPSVGYMLQPN 224 >gi|325295161|ref|YP_004281675.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065609|gb|ADY73616.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] Length = 217 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 6/142 (4%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E R +R +VP++ ++ + DSG DD V KP +E+LAR+ A+ RR Sbjct: 63 VETCRFLRERKVKVPILMLTALSEEDDKVIGLDSGADDYVTKPFGVKELLARIRALLRR- 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + T + +G E++G+ L ++E +L+ L N+G V+K + ++ Sbjct: 122 --KETISGTQSKEIVFNGNFVEIEGKKIELTKKEIEVLKILFENKGTPVSKETLLLKVWE 179 Query: 180 LFDEAVEENVVESHISKLRKKL 201 D V + ++ HI LR KL Sbjct: 180 SRD--VSKRTIDVHIKHLRDKL 199 >gi|303249046|ref|ZP_07335290.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] gi|302489569|gb|EFL49510.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] Length = 223 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 8/179 (4%) Query: 46 VSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 V+ I+ L G G KV+E R R P+I +S S++ + ++G DD ++KP Sbjct: 47 VAVIDVMLPGLDGLKVIEELR--RRKVNTPIIILSAKRSVEDRVRGLETGSDDYISKPFS 104 Query: 105 HREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A+ RR + R G + + R+ L RE +LEY M Sbjct: 105 FSELLARVQALIRRSSSVSEPTRLTVGELSMNLLTREVHRGETAVQLQPREFALLEYFMR 164 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N GK ++KT I ++ FD + N+V+ + +LR K+ + + R +GY + Sbjct: 165 NPGKVLSKTMIMEHVWDYHFDP--QTNLVDVLVCRLRNKIDRDWDRKMLHTLRGVGYVL 221 >gi|241759488|ref|ZP_04757592.1| DNA-binding response regulator [Neisseria flavescens SK114] gi|241320270|gb|EER56603.1| DNA-binding response regulator [Neisseria flavescens SK114] Length = 225 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 14/167 (8%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I VP++ ++ L + L+ D G DD + KP E+ AR+ A+ RR Sbjct: 63 LAQIRNGGCTVPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLRR---H 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +A+T G I + EV G + L +E +L+ L+ G ++++ + Sbjct: 120 GGQAQTLLSNGIITLNPSTHQAEVVGQEQAIMLSNKEFAVLQALLLRPGMILSRSDLEDK 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 IYG + E VE N V+ I LRK KLG + + + R +G+ + N Sbjct: 180 IYG-WGEEVESNAVDFLIHALRK----KLGKEAIQNVRGVGWLVAQN 221 >gi|121594708|ref|YP_986604.1| two component transcriptional regulator [Acidovorax sp. JS42] gi|120606788|gb|ABM42528.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 235 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 88/172 (51%), Gaps = 14/172 (8%) Query: 57 GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G+ L+L R RA S Q+P++ ++ + D+G DD + KP +E+LAR+ Sbjct: 60 GQSGLQLARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119 Query: 114 AIYRRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 A+ RR +VS++ G + + + QG+ + E ++L YLM + + ++ Sbjct: 120 AVLRRRAPEQVSDS-VSIGELVLDAATHRVSYQGQQLKVGPTEFKLLHYLMKHPERVHSR 178 Query: 171 TQIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Q+ I+G +F +EE V+ H+ +LR+ L +G V++ R GY + Sbjct: 179 AQLLDKIWGDHVF---IEERTVDVHVKRLREAL--GVGGAMVETVRGAGYRL 225 >gi|23100907|ref|NP_694374.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22779141|dbj|BAC15408.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 233 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 96/199 (48%), Gaps = 20/199 (10%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIR 68 L K+GY + +DG + ++E E S + ++ ++ L GK G +VL R +R Sbjct: 22 LEKEGYQVVVANDGDT-----AIELAE----SEKPNLILLDIMLPGKDGNEVL---REVR 69 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 +P+I ++ + + + G DD V KP +RE++ARV A RR +V + +T Sbjct: 70 KTQNIPVIMLTAKDAEIDKVLGLELGADDYVTKPFSNRELIARVKANLRREQVPDETVKT 129 Query: 129 ------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 G + V D +GE L RE +L YL + G+ + + + ++G +D Sbjct: 130 TKDIVIGDLIVHPDAYVVSRKGEEIELTHREFELLHYLARHIGQVMTREHLLETVWG-YD 188 Query: 183 EAVEENVVESHISKLRKKL 201 + V+ + +LR+K+ Sbjct: 189 YFGDVRTVDVTVRRLREKI 207 >gi|330889138|gb|EGH21799.1| DNA-binding response regulator QseB [Pseudomonas syringae pv. mori str. 301020] Length = 220 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 59/218 (27%), Positives = 99/218 (45%), Gaps = 24/218 (11%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL +GY + +DG+S ++L E + + ++ F +L R +R Sbjct: 19 ALNTEGYTLDWLEDGLS--ALHALRSEPFDLLLLDLGLPRMDGF---------DLLRQLR 67 Query: 69 AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 A +P++ ++ + D+G DD + KP E+ ARV A+ RR S RA Sbjct: 68 AEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQ 124 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E I + + QG P+ E ++L LM GK V + ++ +YG + + Sbjct: 125 PLLEHAGISLDPASQQVSFQGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSHTLYG-WQD 183 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE N +E I LRKKL +L + + R +GY ++ Sbjct: 184 KVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217 >gi|302389531|ref|YP_003825352.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302200159|gb|ADL07729.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 232 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 6/189 (3%) Query: 38 LQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 L + D+ ++ L G G +V + R RA +P+I ++ + + G D Sbjct: 42 LVQKEQPDLVILDIMLPGIDGLEVCRIFRRQRATRDIPVILLTAKTEEIDKVLGLEMGAD 101 Query: 97 DVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153 D + KP RE++ARV A+ RR ++ S+ + GPI + + + V+GE +E Sbjct: 102 DYITKPFSPRELVARVKAVLRRADKVERSDKIIKAGPITIDVERHEVFVEGERKDFTPKE 161 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDS 212 +L L +N GK ++ + I+G +D + V+ HI LR+K+ RN +++ Sbjct: 162 FELLRLLASNPGKVFSREYLLENIWG-YDYLGDTRTVDVHIRHLRQKIERNSDTPQFIET 220 Query: 213 KRFLGYSID 221 R +GY + Sbjct: 221 VRGIGYKFN 229 >gi|291617790|ref|YP_003520532.1| BasR [Pantoea ananatis LMG 20103] gi|291152820|gb|ADD77404.1| BasR [Pantoea ananatis LMG 20103] Length = 228 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ R P++ ++ +++ + D+G DD + KP E+LAR+ A+ RR + Sbjct: 63 LQRLRRQKQMQPVLILTARDTIEERIAGLDAGADDYLIKPFALDELLARIRALIRRHVNQ 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++R E G + + R + + L +E IL LM G V + ++ IY F Sbjct: 123 GDSRLEVGNLSLDMTHRQIHLDDVLLDLTPKEFSILSRLMLKAGHPVHRELLYQDIYN-F 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D N +E HI LR+K+G + + R GY++ Sbjct: 182 DNEPSTNTLEVHI----HNLRDKVGKATIRTVRGFGYAL 216 >gi|254461523|ref|ZP_05074939.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacterales bacterium HTCC2083] gi|206678112|gb|EDZ42599.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacteraceae bacterium HTCC2083] Length = 227 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 6/164 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R +++ + +P+I +S + ++G DD V KP +E++ARV A R Sbjct: 63 IEVCRQVKSDTTTKAIPIIMLSARSEDVDKVRGLETGADDYVAKPYSVKELMARVKAQLR 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + + A+ + +G +V G L E R+L LM G+ + Q+ Sbjct: 123 RTRPAALGAQLDFEDIVLNGETHKVTRAGVELKLGPTEYRLLSQLMEKPGRVWPREQLLD 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++G D V+ V+ H+ +LRK L + G DP+ + R GY+ Sbjct: 183 HVWG-RDAFVDTRTVDVHVGRLRKALTAEGGSDPIRTIRGTGYA 225 >gi|207723568|ref|YP_002253967.1| two-component response regulator protein [Ralstonia solanacearum MolK2] gi|207743074|ref|YP_002259466.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] gi|206588769|emb|CAQ35732.1| two-component response regulator protein [Ralstonia solanacearum MolK2] gi|206594471|emb|CAQ61398.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] Length = 232 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPI 131 +P++ ++ + +++ + + G DD + KP E+ AR A+ RR + + GP+ Sbjct: 73 LPVMILTAHGAVEERVRGLNLGADDYLTKPFDLTEVEARARALIRRSHGHERTQLQCGPL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + GE L RER +LE L+ G+ V K I I+G+ +E+V + +E Sbjct: 133 HYDGTSGAFALHGEPLALTGRERAVLEVLVLRDGRAVNKAAISEKIFGI-NESVNADAIE 191 Query: 192 SHISKLRKKL 201 ++ +LRKKL Sbjct: 192 IYVHRLRKKL 201 >gi|161522889|ref|YP_001585818.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189348280|ref|YP_001941476.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|160346442|gb|ABX19526.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189338418|dbj|BAG47486.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] Length = 221 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 107/228 (46%), Gaps = 23/228 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ---SSARE-DVSAIEAFLIGKG 57 +L++D L+ DG A G+ +GF +W++ ++ RE A A ++ G Sbjct: 3 ILLVEDDILLGDGIRA-----GLRQQGFQV----DWVRDGDAAQRELRAHAHAAAILDLG 53 Query: 58 EKVLE----LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 +++ L RI R +P++ ++ ++ + D G DD V KP+ E+ AR+ Sbjct: 54 LPLVDGMDVLQRIRRDGMALPILILTARDAVPDRIRALDVGADDYVIKPVDLYELGARLR 113 Query: 114 AIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ RR R + + + R G L RE +L LM N G+ +++ Q Sbjct: 114 ALVRRAHGRPTERLQAQDVELEPASRTARRAGVAVALSTREFDLLHILMLNAGRVLSREQ 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I +Y + + VE N VE H+ +LR KLG + + + R +GY + Sbjct: 174 IELYLYS-WGQEVESNAVEVHVHRLRA----KLGSELIRTVRGVGYVL 216 >gi|309803189|ref|ZP_07697286.1| response regulator ArlR [Lactobacillus iners LactinV 11V1-d] gi|309806124|ref|ZP_07700143.1| response regulator ArlR [Lactobacillus iners LactinV 03V1-b] gi|308164697|gb|EFO66947.1| response regulator ArlR [Lactobacillus iners LactinV 11V1-d] gi|308167479|gb|EFO69639.1| response regulator ArlR [Lactobacillus iners LactinV 03V1-b] Length = 229 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 11/151 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R P+I ++ S+ + D G DD + KP E+LAR+ A+ RR++ Sbjct: 49 LEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQ 108 Query: 121 VSNNRA--ETGPIRV--FSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + G RV F+D R + L +RE +L L+ ++ V + Sbjct: 109 IEKRASGEAAGVQRVIRFNDLTIETANRIVHRGDKTVDLTKREYNLLMTLIEHKNNVVTR 168 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q+ I+G D +E NVVE ++ LR K+ Sbjct: 169 EQLLKKIWG-SDSKIETNVVEVYVRYLRNKI 198 >gi|299769446|ref|YP_003731472.1| putative two component heavy metal response transcriptional regulator [Acinetobacter sp. DR1] gi|298699534|gb|ADI90099.1| putative two component heavy metal response transcriptional regulator [Acinetobacter sp. DR1] Length = 223 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 78/158 (49%), Gaps = 4/158 (2%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123 +++R S++P+I ++ + + + G DD + KP + E+LAR+ ++ RR + + Sbjct: 64 QVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQYLQE 123 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182 N +++ G + L + E +L YL+ N+ + V + QI S ++ + FD Sbjct: 124 NELSISDLKMDLVAHKVWRNGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNINFD 183 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N ++ + +LR K+ + + R LGY I Sbjct: 184 --TDTNFIDVAVRRLRSKIDEGYDLKLIHTIRGLGYKI 219 >gi|227114743|ref|ZP_03828399.1| DNA-binding transcriptional activator KdpE [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 226 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 16/159 (10%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R S +P+I +S Q +D D+G DD + KP E+LAR+ RR SN Sbjct: 66 RDLRQWSSLPVIVLSARTDEQDKIDALDAGADDYLTKPFGIGELLARLRVALRR--HSNT 123 Query: 125 RAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ET G I V R G+ L E R+L L+AN GK + + Q+ + ++G Sbjct: 124 QQETPLVSFGNITVDLLNRQVNRDGQELHLTPIEFRLLATLLANPGKVLTQRQLLTQVWG 183 Query: 180 LFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216 N VE SH ++ LR KL DP + L Sbjct: 184 -------PNAVEHSHYLRIYMGHLRQKLESDPARPRHLL 215 >gi|192361393|ref|YP_001980674.1| phosphate regulon transcriptional regulatory protein PhoB [Cellvibrio japonicus Ueda107] gi|190687558|gb|ACE85236.1| phosphate regulon transcriptional regulatory protein PhoB [Cellvibrio japonicus Ueda107] Length = 232 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 54/226 (23%), Positives = 105/226 (46%), Gaps = 16/226 (7%) Query: 2 FVLIDDRALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + ++D +AL D +E N+ + L + D+ ++ + G Sbjct: 6 ILIVDDESAIRDMLRVALEMADYQCIEAGNAQDAHS-LIIDEKPDLILLDWMM--PGTSG 62 Query: 61 LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R ++ + +P+I ++ + + G DD + KP RE++AR+ A+ R Sbjct: 63 IELARRLKRDEVTANLPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R ++ + PI V DP + + + E R+LE+ + ++ + ++Q Sbjct: 123 R---ADPHVNSAPIIVQGLCLDPASHRVTINNQSVDMGPTEYRLLEFFLTHQERAYTRSQ 179 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + ++G + VEE V+ HI +LRK L D V + R GY Sbjct: 180 LLDHVWG-GNVYVEERTVDVHIRRLRKALAIDGHEDLVQTVRGTGY 224 >gi|82703349|ref|YP_412915.1| two component transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82411414|gb|ABB75523.1| two component transcriptional regulator, winged helix family [Nitrosospira multiformis ATCC 25196] Length = 234 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 7/152 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130 +P+I ++ + +SG DD + KP RE+LAR+ A+ RR + +++ E G Sbjct: 77 IPIIMLTARADESDKVTGLESGADDYITKPFSPRELLARIKAVLRRRAPEAADDVVEIGG 136 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--LFDEAVEEN 188 +R+ S L E R+L YLM + + +++Q+ ++G +F VE+ Sbjct: 137 LRLDSATHRVTANEIEVVLGPTEFRLLHYLMTHSERVHSRSQLLDQVWGDHVF---VEDR 193 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+ HI +LRK L N V + R GY + Sbjct: 194 TVDVHIRRLRKALENVDKDGLVQTVRGSGYRL 225 >gi|317133437|ref|YP_004092751.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315471416|gb|ADU28020.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 226 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 23/168 (13%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +P++ +S L F+ GVDD V KP +E++AR+ R+ +S NR Sbjct: 67 IRKTKDIPVLMLSARGEEYDKLFGFEVGVDDYVVKPFSPKEVMARL-----RVIISRNRQ 121 Query: 127 ET---GPIRVFSD--------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 GP++ F GR V G+ L +E +L YL+ NR +++ Q+ Sbjct: 122 HLQNGGPMQTFRHDGLVVDLAGRSVMVDGQKAELTPKETDLLFYLVQNRNLALSRAQLLQ 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSID 221 ++G +D ++ V++HI K LR+ LG D + + R +GY + Sbjct: 182 DVWG-YDFYGDDRTVDTHI----KMLRSSLGKYKDAIVTLRGVGYKFE 224 >gi|261407193|ref|YP_003243434.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283656|gb|ACX65627.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 227 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 10/166 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL ++++ +P+I ++ + D G DD + KP RE+L+R+ ++ RR + Sbjct: 63 ELCKMVKERRDIPVIFLTVIDDEVNVVMGLDMGADDYITKPFRVRELLSRIKSVLRRYQ- 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ I D R ++G+VF L E R+L + G+ +++ Q+ Sbjct: 122 --KPSQVNSIMDIDDIRINTLEGKVFKNGAEIALTALEYRLLLIFGNHIGQVLSRNQLLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 I+ + + V +N + +I +LR+KL + G + + R LGY + Sbjct: 180 QIWDVAGDFVNDNTLTVYIKRLREKLEDDPGHPTLIKTVRGLGYKV 225 >gi|302874388|ref|YP_003843021.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307691010|ref|ZP_07633456.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577245|gb|ADL51257.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 234 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 13/171 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 EL + IR S +P++ +S + D G DD + KP + EI+ARV + RR Sbjct: 63 ELTKKIREISNMPILILSAKNLDSDKILGLDLGADDYLTKPFNPLEIIARVKSSIRRCYN 122 Query: 119 LKVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 LK +E G + + ++ G + E RIL LM + G+ K Q Sbjct: 123 LKADEVASEKENILTVGELSLNTESFMLTKGGNEISITPTEYRILALLMKSPGRVYTKMQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221 I+ I G + E+ +EN + HISKLR K+ + +P + + R LGY I+ Sbjct: 183 IYELIKGEYFES-DENTIMVHISKLRDKIEDD-SKNPLYIKTIRGLGYKIE 231 >gi|291295489|ref|YP_003506887.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290470448|gb|ADD27867.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 227 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 11/165 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S VP++ ++ ++ ++ D+G DD + KP E+LAR+ A RR+ Sbjct: 66 LEVARRIRKTSNVPIVILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRRV- 124 Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 A TG IRV +GR+ G +E +LE L + GK ++ +I Sbjct: 125 ---TPAITGEIRVSDLIINLEGREVYRSGRRIEFSNKEFELLELLAKSPGKVFSRFEIEE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + NVV+ +I LRKKL + + R +GY + Sbjct: 182 KVWPGYQGG--SNVVDVYIGYLRKKLEGAGERRLIHTVRGVGYVL 224 >gi|153952997|ref|YP_001393762.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219853654|ref|YP_002470776.1| hypothetical protein CKR_0311 [Clostridium kluyveri NBRC 12016] gi|146345878|gb|EDK32414.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219567378|dbj|BAH05362.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 224 Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 7/159 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR SQ P+I +S S + + G DD + KP ++A+++A+ RR A Sbjct: 67 IREMSQCPIIFLSSRDSNMDIIMAVNMGADDYITKPFSMDVLIAKISALIRRTYSYGEGA 126 Query: 127 E-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G I + + E+ L + E +I+ +LM N GK +++ +I ++ Sbjct: 127 SELLECNGAILNLTYKTLSYNEREI-ELTKNEFKIMLFLMKNSGKTISRERIMRTLWD-D 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + +N + +I++LR +LR+ +D + +K+ GY I Sbjct: 185 DNFISDNTLTVNINRLRMRLRDIGLYDFIKTKKGRGYEI 223 >gi|257868062|ref|ZP_05647715.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257874392|ref|ZP_05654045.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257876951|ref|ZP_05656604.1| DNA binding response regulator [Enterococcus casseliflavus EC20] gi|257802145|gb|EEV31048.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257808556|gb|EEV37378.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257811117|gb|EEV39937.1| DNA binding response regulator [Enterococcus casseliflavus EC20] Length = 222 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 22/209 (10%) Query: 3 VLIDD----RALVK-----DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL 53 +++DD RALVK +GY+ DG +E L+ I + Sbjct: 5 LIVDDDTHMRALVKTYAEIEGYLCFEAADG-----------KETLEKLTNHSFDLILLDV 53 Query: 54 IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 + G+ + IR P+I I+ L F+ G DD + KP +E++AR+ Sbjct: 54 MMPGKDGFQTLSEIRGSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIK 113 Query: 114 AIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ +R + + G + V + G PL +E +L YL N +++ Sbjct: 114 AVLKRSSQFQFEKIVFGDLEVNVFSHTVTINGNPLPLTPKEFDLLVYLTKNNHIALSRES 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I ++G FD + V++HI LR++L Sbjct: 174 ILEGVWG-FDYFGDTRTVDTHIKSLRERL 201 >gi|257126116|ref|YP_003164230.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257050055|gb|ACV39239.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 227 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 16/166 (9%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + RI ++VP++ ++ ++ + D G DD + KP E++AR+ + RR Sbjct: 63 IKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNSGN 122 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + V+N + + VF D G + L RE ILEYL+ N+GK + + +I Sbjct: 123 ADNVITVANLKVDLDAKTVFRD-------GVLIKLSGREYSILEYLIRNKGKILPRERIE 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+ ++ NV++ +I LRKK+ + + + R LGY + Sbjct: 176 DHIWN-YEYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVL 220 >gi|291286929|ref|YP_003503745.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290884089|gb|ADD67789.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 236 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 9/168 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +IIR+ +P++ +S ++ + + G DD + KP + E++ARV AI RR + Sbjct: 67 QICKIIRSELDIPIMILSARDNVSDKVVCLEYGADDYMTKPFENIELIARVKAILRRSEK 126 Query: 122 SNNRAE--TGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +N E TG + +F R ++ E L +E IL Y + G +++ I Sbjct: 127 NNTSQEAGTGDVLIFHHMTIDKASRQVFIKDEKVALTPKEYEILLYFVGKTGHVLSRDDI 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + I+G ++ HI LR+K+ N D V + +GY I Sbjct: 187 VNDIWGKNSIYSWSRSLDVHIKNLRQKIEINPKNPDIVKTVSGVGYKI 234 >gi|167824076|ref|ZP_02455547.1| DNA-binding response regulator [Burkholderia pseudomallei 9] gi|167845607|ref|ZP_02471115.1| DNA-binding response regulator [Burkholderia pseudomallei B7210] gi|167894158|ref|ZP_02481560.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] Length = 241 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 3/137 (2%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNN 124 + +S +P++ +++ + ++G DD V KP +E +ARV A+YRR + + Sbjct: 72 KNYSNIPVLILTNAILESEVVAALEAGADDYVIKPPRKQEFVARVKALYRRATETRTLSE 131 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E GP R+ + + E L +E I+E L N G+ V++ ++ ++G + Sbjct: 132 LIEIGPYRIQTSEKVVYFHREAITLSPKEYEIIELLARNIGQIVSRDKMVYQVWGRLPDE 191 Query: 185 VEENVVESHISKLRKKL 201 +++HI ++R+KL Sbjct: 192 AAFRTLDTHIYRIRRKL 208 >gi|118476337|ref|YP_893488.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118415562|gb|ABK83981.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 225 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQHAQIQYQGILWDEAKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDHHLKTVYGVGYRW 220 >gi|45861562|gb|AAS78632.1| RssB [Serratia marcescens] Length = 219 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 6/151 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127 A +P+I ++ +++ ++ DSG DD + KP E+++RV A+ RR+ ++ Sbjct: 69 AGQNIPIIILTARDRIESLVNSLDSGADDFLAKPFALPELISRVKAVNRRMAGFASQTWS 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + + + E+ L ++E +L LM G V K + ++G D +VE Sbjct: 129 LGTLYLDPVNHQVTLDNELLMLSKKEYHLLHELMRCAGTVVRKAVLEQRLFGHGD-SVES 187 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 N +E H+ LR+ K+G + + + R +GY Sbjct: 188 NSLEVHMHNLRR----KIGKERIITVRGIGY 214 >gi|78067418|ref|YP_370187.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77968163|gb|ABB09543.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 224 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +RA +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 64 IDVLRTLRARGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 122 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+E+ G + + + G L RE +LE L+A G ++K+Q+ Sbjct: 123 --QAGRSESLIRHGALTLDPASHQVTLDGVPVALSAREFALLEALLARPGAVLSKSQLEE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 181 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 220 >gi|84498508|ref|ZP_00997278.1| response regulator of two-component system [Janibacter sp. HTCC2649] gi|84381251|gb|EAP97135.1| response regulator of two-component system [Janibacter sp. HTCC2649] Length = 237 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 6/153 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SNNRAET 128 ++P++ ++ S+ + G DD V KP E++AR+ A+ RR + N+ Sbjct: 81 RLPIVFVTARDSVDDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTRGDIDGNSALRF 140 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 + + D + G V E ++L YLM N + ++K QI ++ +D E Sbjct: 141 EDLELDEDSHEVRRAGRVIETSPTEFKLLRYLMLNPNRVLSKAQILDHVWE-YDFRGESG 199 Query: 189 VVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +VES+IS LR+K+ + G P + +KR +GY + Sbjct: 200 IVESYISYLRRKIDTE-GLPPLIHTKRGVGYVL 231 >gi|254248194|ref|ZP_04941514.1| Response regulator receiver [Burkholderia cenocepacia PC184] gi|124874695|gb|EAY64685.1| Response regulator receiver [Burkholderia cenocepacia PC184] Length = 224 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 10/154 (6%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128 P++ +S + ++ +G DD + KP E+ AR+ + RR + R ET Sbjct: 74 TPVLVMSAMSGVDQRIEGLRAGGDDYLVKPFSLEEMCARIDVLIRR-RPRGTRVETVLRA 132 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187 G + + R + L E R+LE++M N G+ + +T IF A++G FD Sbjct: 133 GELALDLVRRRATLGARELALLPTESRVLEFMMRNAGRVLTRTMIFEAVWGCRFDPGT-- 190 Query: 188 NVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 N+++ HI +LRKK+ N+ G P + + R GY + Sbjct: 191 NLIDVHIGRLRKKV-NRPGAAPLIRTIRGSGYML 223 >gi|150389321|ref|YP_001319370.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949183|gb|ABR47711.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 224 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 2/161 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 +L R +R H +PL+ ++ + F G DD + KP E++ RV A+ +R + Sbjct: 62 QLCRELREHYDLPLLMLTAKGETSQKVKGFQLGTDDYLVKPFEPMELVVRVKALLKRYQI 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ G + + V E F LP +E +L + + K ++ Q+ I+G Sbjct: 122 ITSQTVRIGELVMNQKNYKVTVGSESFTLPLKEFELLFKMASYPEKTFSREQLIEDIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D A E ++ HI++LR++ + + + R LGY ++ Sbjct: 181 YDFAGNERTLDVHINRLRQRFPEENHSFKIRTIRGLGYRLE 221 >gi|332968094|gb|EGK07181.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 237 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 90/174 (51%), Gaps = 17/174 (9%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ + IR +S +P++ ++ + + G DD + KP RE++ARV AI RR+ Sbjct: 63 LEVCKQIRKENSHLPILMLTAKNEEFDKVLGLELGADDYMTKPFSPRELVARVKAILRRM 122 Query: 120 KV--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + N G + + ++G + +G+ L +E +L +L ++RGK +++ Sbjct: 123 EALRDQGIPGDRNCLRVGELEIDTEGYEVRKKGDPVDLTPKEFELLIHLASHRGKVLSRD 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL----RNKLGFDPVDSKRFLGYSID 221 Q+ +A++ +D + +V+ H+S LR+K+ RN + V R +GY + Sbjct: 183 QLLNAVWD-YDYIGDTRIVDVHVSHLREKVEEDSRNPIYIKTV---RGIGYKFE 232 >gi|329930122|ref|ZP_08283741.1| putative sensory transduction protein RegX3 [Paenibacillus sp. HGF5] gi|328935381|gb|EGG31856.1| putative sensory transduction protein RegX3 [Paenibacillus sp. HGF5] Length = 242 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 10/166 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL ++++ +P+I ++ + D G DD + KP RE+L+R+ ++ RR + Sbjct: 78 ELCKMVKERRDIPVIFLTVIDDEVNVVMGLDMGADDYITKPFRVRELLSRIKSVLRRYQ- 136 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ I D R ++G+VF L E R+L + G+ +++ Q+ Sbjct: 137 --KPSQVNSIMDIDDIRINTLEGKVFKNGAEIALTALEYRLLLIFGNHIGQVLSRNQLLE 194 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 I+ + + V +N + +I +LR+KL + G + + R LGY + Sbjct: 195 QIWDVAGDFVNDNTLTVYIKRLREKLEDDPGHPTLIKTVRGLGYKV 240 >gi|283785895|ref|YP_003365760.1| two-component response regulator [Citrobacter rodentium ICC168] gi|282949349|emb|CBG88960.1| two-component response regulator [Citrobacter rodentium ICC168] Length = 240 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 6/153 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S+VP++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K + P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQMDAESPL-IVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ Q+ + +Y + V + ++SHI LR+KL Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212 >gi|260892914|ref|YP_003239011.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260865055|gb|ACX52161.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 237 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 85/164 (51%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP++ ++ + + G DD + KP RE++ARV A+ RR + Sbjct: 68 EVCREIRKISDVPILMLTARGDEIDRVLGLELGADDYIVKPFSPREVVARVKAVLRRARK 127 Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S+ + G + + + R V G+ L +E +L L + GK + ++ ++ Sbjct: 128 SSTPGKQIVLGNVVIEPEARTVTVGGKTLALTPKEFDLLLTLARSPGKVFRREELLDLVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221 G +D + V++H+++LR+KL N+ G P+ + + +GY ++ Sbjct: 188 G-YDFYGDSRTVDTHVARLREKL-NQAGAPPLIATVWGVGYKLE 229 >gi|228910935|ref|ZP_04074744.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228848886|gb|EEM93731.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 222 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 7/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++D S + + +G DD + KP E++ARV AI RR Sbjct: 59 EICRQIRLVKTTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 117 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + ET + +F D V+ GE L +RE +L +L+ N+ +++ + + Sbjct: 118 CNQQNETNFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQ 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ V NVV+ +I +RKKL+ + + + GYS+ Sbjct: 178 VWG-YNVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 220 >gi|218509607|ref|ZP_03507485.1| phosphate regulon, two-component response regulator protein [Rhizobium etli Brasil 5] Length = 227 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 84/166 (50%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + +G DD V KP E++ARV A+ R Sbjct: 62 IELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLR 121 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + V ++ + G I + + + L E R+LE+LM++ G+ +++Q+ Sbjct: 122 RARPEVLSSVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK L D + + R GYS++ Sbjct: 182 GVWG-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226 >gi|254447845|ref|ZP_05061310.1| two component transcriptional regulator, winged helix family [gamma proteobacterium HTCC5015] gi|198262625|gb|EDY86905.1| two component transcriptional regulator, winged helix family [gamma proteobacterium HTCC5015] Length = 233 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 17/172 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + +R+HS P+I ++ + + G DD + KP + RE+ AR+ A+ RR + Sbjct: 63 LDVLQSLRSHSDTPIIMLTGRGDDIDRIIGLEMGADDYMGKPCNPRELSARLRAVLRRAQ 122 Query: 121 V----SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + S AET I V RD +GE L E +LE LM + G+ V+K + Sbjct: 123 MTADSSQQNAETLQLHGIEVNRGQRDARFEGESLGLTSAEFSVLELLMRSSGEIVSKETL 182 Query: 174 FSAIYGL----FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + +D + ++ H+S++R+KL LG D + + R GY + Sbjct: 183 TEKVLQRPLMPYDRS-----IDVHVSRVRQKLSKYLGDQDIIKTARGRGYMM 229 >gi|114763733|ref|ZP_01443127.1| transcriptional regulator, winged helix family protein [Pelagibaca bermudensis HTCC2601] gi|114543734|gb|EAU46747.1| transcriptional regulator, winged helix family protein [Roseovarius sp. HTCC2601] Length = 222 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 103/234 (44%), Gaps = 35/234 (14%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI------G 55 ++++D A++ DG G+ L GF+ E + + EA ++ G Sbjct: 3 ILIVEDDAVLGDGLSV-----GLRLSGFSPELVETCADARHAIAMEGFEAVVLDLMLPDG 57 Query: 56 KGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G LEL R +R + S +P++ ++ L + D+G DD + KP E+ AR+ A Sbjct: 58 SG---LELLRELRQSGSDMPVLMLTARDGLDDRVTGLDAGADDYLGKPFELPELSARLRA 114 Query: 115 IYRRLKVSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 + RR + RAE S R P E RRE +L LM G Sbjct: 115 LTRR---AQGRAENLLHWNGLALDTARMSGRRGP----EEIAFSRREYTVLAALMERPGS 167 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++K + +YG + E +E N VE H+ LR KL + GF + + R GY + Sbjct: 168 ILSKATLEERLYG-WQEDIESNTVEVHVHHLRAKLGS--GF--IQTVRGAGYRL 216 >gi|99078311|ref|YP_611569.1| two component transcriptional regulator [Ruegeria sp. TM1040] gi|99035449|gb|ABF62307.1| two component transcriptional regulator, winged helix family [Ruegeria sp. TM1040] Length = 230 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 89/198 (44%), Gaps = 18/198 (9%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK-VLELPRII 67 A+ K G+ F DG++ ++ R D + IG EK LE+ R I Sbjct: 21 AIEKAGFETCFASDGLAA------------IAAQRRDAPDLVVLDIGLPEKDGLEVCRDI 68 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R S VP++ ++ + + G DD + KP RE++AR+ AI +R S + Sbjct: 69 RKSSDVPILFLTARDEEIDRIVGLELGADDYLTKPFSPRELVARIKAILKRSTPSITQLP 128 Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 T G + + ++ G L E R+L+ LM + + Q+ A+YG F+ Sbjct: 129 TALTHGALELDAERHQCAFAGVPVSLTGSEFRLLKVLMTRPDLVLTRAQLVEALYG-FNI 187 Query: 184 AVEENVVESHISKLRKKL 201 V + ++SHI +R K+ Sbjct: 188 HVSDRTIDSHIRNIRAKM 205 >gi|186683925|ref|YP_001867121.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186466377|gb|ACC82178.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 225 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 83/157 (52%), Gaps = 4/157 (2%) Query: 67 IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +R+HS +P++ ++ ++ + D+G DD V KP+ +E+ AR+ A+ RR VS+ Sbjct: 66 LRSHSYSMPVLMLTARDTVSDKITGLDAGADDYVVKPVDLQELFARIRALLRRGNVSSPP 125 Query: 126 -AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E G + + + + L +E ILE L+ N + ++++ I I+ L + Sbjct: 126 ILEWGNLHLNPSTYEVSYGKNMLHLTPKEYGILELLLRNGRRVLSRSVIIEHIWSL-ESP 184 Query: 185 VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 EE+ V+ H+ LR+KL+ F D +++ +GY + Sbjct: 185 PEEHAVKVHLRSLRQKLKAAGAFEDFIETVHGIGYRL 221 >gi|331697739|ref|YP_004333978.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326952428|gb|AEA26125.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 247 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 10/166 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ R IR S VP+I +S + + SG DD + KP E++ARV A+ RR Sbjct: 58 VDVCRAIRQVSDVPVIVVSARGEVDDRILGLHSGADDYIVKPYDIGELVARVHAVCRRRG 117 Query: 121 VSNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + A G +RV D V G L R+E ++L L A RG +++I Sbjct: 118 TPSGAAAPGGEVAVDGVRVDLDRHIVTVDGAEVSLTRKEFQVLALLAAARGTVCTRSRIV 177 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G ++ H++ LR KL D V + R +GY + Sbjct: 178 AEVWGRSWPGANRT-LDVHVATLRTKLGRA---DLVQTVRGVGYRL 219 >gi|257866986|ref|ZP_05646639.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873320|ref|ZP_05652973.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257877062|ref|ZP_05656715.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257801042|gb|EEV29972.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257807484|gb|EEV36306.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257811228|gb|EEV40048.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 224 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 13/162 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I IS + + + G DD V KP ++A++ A+ RR S N Sbjct: 67 IREASKVPIIFISSRNTNMDMIMAMNMGADDFVTKPFEIDVLIAKINALLRR---SYNYV 123 Query: 127 ETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E+ + +G + GE L + E R+L LM N GK +++ ++ A++ Sbjct: 124 ESSSETLVHNGLTLNIDNSSMYINGESIDLSKNEYRLLYILMKNHGKILSREKLLRALWD 183 Query: 180 LFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE V++N + +I++LR+K+ +++K GY + Sbjct: 184 --DERFVDDNTLTVNINRLRRKIEQAGMNGYIETKVGQGYIV 223 >gi|227873308|ref|ZP_03991572.1| response regulator [Oribacterium sinus F0268] gi|227840845|gb|EEJ51211.1| response regulator [Oribacterium sinus F0268] Length = 237 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/211 (26%), Positives = 99/211 (46%), Gaps = 15/211 (7%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V DD+ +V+ I L G+ ++ F+ + + L+ +E+V I ++ G Sbjct: 4 ILVCDDDKQIVEAISIYLTGEGYQVIKAFDGYDVLKILE---KENVDLIILDVMMPGLDG 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + IR S +P+I +S + + G DD + KP + E++ARV + RR Sbjct: 61 IRTTLKIREKSSIPIIILSAKGEDTDKILGLNIGADDYITKPFNPLEMVARVKSQLRRYT 120 Query: 121 VSNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N E G + + D ++ V GE+ L E IL L+ N GK + Sbjct: 121 QLGNMNEQSKGEAIYSCGGLVINDDTKEVSVDGELVKLTPIEYNILLLLVRNAGKVFSID 180 Query: 172 QIFSAIYGLFDEAV-EENVVESHISKLRKKL 201 +I+++I+ +EA+ +N V HI +R+K+ Sbjct: 181 EIYTSIWN--EEAIGADNTVAVHIRHIREKI 209 >gi|226322770|ref|ZP_03798288.1| hypothetical protein COPCOM_00542 [Coprococcus comes ATCC 27758] gi|225208751|gb|EEG91105.1| hypothetical protein COPCOM_00542 [Coprococcus comes ATCC 27758] Length = 223 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S VP+I +S + + G D+ + KP + A+V A+ RR L+ + Sbjct: 67 IRKLSNVPIIFLSSMNDNMNIVMAMNMGGDEFIEKPFDLNVVTAKVQAVLRRAYALQGTA 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N E G + + + G+ L + E +I + + GK V + I + ++ DE Sbjct: 127 NIIEHGEMLLNLGDASLTIAGQKIELTKNEFKICQMFFESAGKFVTRDAIMTRLWE-SDE 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL D + +K+ +GY + Sbjct: 186 FIDDNTLTVNVARLRKKLEEAGMHDVIRTKKGIGYML 222 >gi|215919141|ref|NP_820222.2| transcriptional regulatory protein [Coxiella burnetii RSA 493] gi|206584025|gb|AAO90736.2| transcriptional regulatory protein [Coxiella burnetii RSA 493] Length = 232 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 17/226 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + DG A G +++ + + SS E I L L+ Sbjct: 13 LLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRSGLD 72 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR + P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 73 VLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR--- 129 Query: 122 SNNRAETGPIRVFSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S RA+ PI D DP ++ + + RRE +L+ L+ N G+ +++ Q+ Sbjct: 130 SKERAK--PIISHGDITLDPASHVVTLKKKEVMVARREFALLQKLLENAGRVISREQLNQ 187 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +YG + E ++ N +E HI LRK+ KL + + R +GY ++ Sbjct: 188 TLYG-WGENIDSNALEVHIHNLRKRFGAKL----IRTIRGVGYMVE 228 >gi|329732143|gb|EGG68497.1| response regulator receiver domain protein [Staphylococcus epidermidis VCU144] Length = 221 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 5/151 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAE 127 S +P+I ++ +L T L F G D + KP + E++ R+ + + ++ N + Sbjct: 69 SNIPIIFLTAKDNLDTRLKCFSLGAKDYLPKPFYMEELIIRIKNVLNQSHSQSMTPNIKK 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 T + ++ D +V + ++E I++ L N +K QI+ +I ++ Sbjct: 129 TKELIIYYDTYRIDVNNMTIDITKKEFEIIKLLSLNPQYYFSKEQIYDSIN--LNKTGNT 186 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VV HI K+RKKL F+ +D+K +GY Sbjct: 187 QVVAEHIRKIRKKLSCYSRFEYIDTKWGVGY 217 >gi|325289049|ref|YP_004265230.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324964450|gb|ADY55229.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 227 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/155 (24%), Positives = 77/155 (49%), Gaps = 2/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 R + +P+I ++ L + + F G DD + KP E++ARV A+ RR K+ ++ Sbjct: 71 RYYENLPVIMLTAKGELASKVKGFGLGADDYLTKPFEGDELIARVQALLRRYKIEASQVI 130 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 +TG + + + + G +P +E ++ L GK ++ Q+ I+G+ D Sbjct: 131 QTGNVLIDKNSYSITLNGVREDIPLKEFELIFKLAGFPGKTFSRNQLIEDIWGV-DFEGN 189 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ H+++LR + + + + R LGY ++ Sbjct: 190 ERTLDVHVNRLRDRFPEETAGFKITTVRGLGYRLE 224 >gi|313680468|ref|YP_004058207.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313153183|gb|ADR37034.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 235 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 11/165 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S +P++ ++ ++ ++ D+G DD + KP E+LARV A RR+ Sbjct: 74 LEVARRIRKTSNIPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRV- 132 Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 A TG IRV +GR+ G L +E +LE L + GK ++ +I Sbjct: 133 ---TPAITGEIRVADLIINLEGREVFRGGRRIELSNKEFELLELLARSPGKVFSRFEIEE 189 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + NVV+ +I LRKKL + + + R +GY + Sbjct: 190 KVWPGYQGG--SNVVDVYIGYLRKKLEAEGERRLIHTVRGVGYVL 232 >gi|310641009|ref|YP_003945767.1| alkaline phosphatase synthesis transcriptional regulatory protein phop [Paenibacillus polymyxa SC2] gi|309245959|gb|ADO55526.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus polymyxa SC2] Length = 233 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 20/189 (10%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAH-SQVPLIGIS 79 LEFE + S + + +E + G + VL EL R IR H + VP+I ++ Sbjct: 22 LEFEGYQVSKEKNGIDGLETYCKGSWDLVLLDIMIPGINGIELLRRIRKHDANVPVILLT 81 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-------RLKVSNNRAETGPIR 132 S+ ++ D G +D V KP E+LARV A R L+V++ G +R Sbjct: 82 AKSSIADKVEGLDLGANDYVTKPFVIEELLARVRAALRVGATKDMALQVADQWLSAGDLR 141 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + R+ L RE +L +L+ ++ + +++ Q+ ++G+ D + NVV+ Sbjct: 142 LHEGTREVLRGEHNIELTPREFDLLVHLLRHQRQVLSREQLLENVWGI-DYIGDTNVVDV 200 Query: 193 HISKLRKKL 201 +I +R K+ Sbjct: 201 YIRYVRNKI 209 >gi|157375856|ref|YP_001474456.1| DNA-binding response regulator [Shewanella sediminis HAW-EB3] gi|157318230|gb|ABV37328.1| DNA-binding response regulator [Shewanella sediminis HAW-EB3] Length = 233 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 5/166 (3%) Query: 61 LELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 LE+ + IRA S +P++ ++ S++ + F +G DD + KP +E+ R A+ RR Sbjct: 67 LEVCQQIRAKSARHIPILMLTARDSIEDKVSGFTAGADDYLTKPFSLQELEVRCLALSRR 126 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 L +N+ G + V + G+V L RIL L + V+++ + I Sbjct: 127 HLLQTNDILTLGCLSVDRKRQQATRDGKVLNLHAMGFRILTELAEAYPQVVSRSVLSQKI 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G DE E + + SHI +LR L + + + +G+++D N Sbjct: 187 WG--DEPTESDAMRSHIYQLRNVLDKPFDYPILKTVHGIGFTLDIN 230 >gi|24379132|ref|NP_721087.1| putative response regulator SpaR [Streptococcus mutans UA159] gi|290580858|ref|YP_003485250.1| putative response regulator [Streptococcus mutans NN2025] gi|24377036|gb|AAN58393.1|AE014909_9 putative response regulator SpaR [Streptococcus mutans UA159] gi|254997757|dbj|BAH88358.1| putative response regulator [Streptococcus mutans NN2025] Length = 219 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 3/159 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R IR P++ ++ + G DD + KP +E+LARV A RR + Sbjct: 60 LSFCRDIRNLVDCPILFLTAKSQEADVVTGLSYGADDYICKPFGVQELLARVDAHLRRER 119 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + PIR + +G+ L + E I E L RG+ +K Q++ +Y Sbjct: 120 REHHASLVLEPIRFDLSAKRVTAKGKKLDLTKSEYEICELLAKRRGQVFSKDQLYDYLYT 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++E + HI +R K R +G +P+++ +GY Sbjct: 180 -YEERGTPAAIAEHIKNIRAKFRT-IGLEPIETVWGIGY 216 >gi|54302584|ref|YP_132577.1| putative transcriptional regulator [Photobacterium profundum SS9] gi|46916008|emb|CAG22777.1| putative transcriptional regulator [Photobacterium profundum SS9] Length = 232 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 76/152 (50%), Gaps = 8/152 (5%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAET 128 VP+I ++ S+ + DSG D + KP E+LAR+ R K ++ N Sbjct: 84 HVPVILLTAMVSVTDKVIGLDSGAKDYLTKPFAEEELLARIRLHLRNGKDDHLAANIITV 143 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G I + + R+ G++ L R E +L +L N G+ + ++ ++G ++ Sbjct: 144 GQISINMESREVNHDGDIVMLTRTEFELLVFLAKNAGRVFTRDELLDQVWG-YNHYPTTR 202 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V++HI +LR+KL +G + +++ R +GY + Sbjct: 203 TVDTHILQLRQKL---MGIE-IETLRGVGYRM 230 >gi|326792833|ref|YP_004310654.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543597|gb|ADZ85456.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 100/219 (45%), Gaps = 24/219 (10%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L KDGY E + + + EE L +D+ + ++ + LE+ + IR Sbjct: 21 LEKDGY-----------EVYTAYDGEEGLNLIKTKDLDLVLLDIMLPKKDGLEICKEIRQ 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 +VP+I IS + + G DD V KP RE++ARV A RR N+AE Sbjct: 70 TKEVPIIIISAKADEIDKVLALELGADDYVTKPFGMREVMARVKARLRRKMTEGNKAEAN 129 Query: 130 PIRVFSDGRDPEVQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + D +++ E L RE +L++L +G+ ++ ++ ++G ++ Sbjct: 130 EDNLVEDNLCMDLKKYEVSKNNEAIDLTLREFELLKFLWQAKGQVFSREELLEKVWG-YE 188 Query: 183 EAVEENVVESHISKLRKKLRN---KLGFDPVDSKRFLGY 218 + V+ I +LR+K+ + K + V +KR +GY Sbjct: 189 YYGDVRTVDVTIRRLREKIEDDASKAAY--VLTKRGVGY 225 >gi|295106159|emb|CBL03702.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 250 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 15/212 (7%) Query: 3 VLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSA----REDVSAIEAFLIG-K 56 ++++D A + G+ G V + F+ E L+++A R DV + L G Sbjct: 18 LIVEDDAHIGGIVADCLGNAGYVCTQAFSGTEARLVLEAAAARGERFDVVVCDLMLPGLP 77 Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE ++ L R AH+ P++ S S ++ G DD + KP E+LAR+ Sbjct: 78 GEDIVRLIRTADAHT--PIVVTSARTSATDKVNLLKLGADDYLAKPFDLDELLARIEVQL 135 Query: 117 R---RLKVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R R S + G + R V G PL R E I+E L A+ K K Sbjct: 136 RHRGRALASQPGGDVLCVGAWAIDRAARTLTVDGAEVPLTRTEFNIVELLAAHPRKVYTK 195 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 ++F +G A E++ V H+S +R KL+ Sbjct: 196 QELFELAWG-EPYAAEDSTVSVHVSNIRAKLK 226 >gi|259500533|ref|ZP_05743435.1| DNA-binding response regulator [Lactobacillus iners DSM 13335] gi|302191223|ref|ZP_07267477.1| DNA-binding response regulator [Lactobacillus iners AB-1] gi|309805234|ref|ZP_07699286.1| response regulator ArlR [Lactobacillus iners LactinV 09V1-c] gi|309808122|ref|ZP_07702036.1| response regulator ArlR [Lactobacillus iners LactinV 01V1-a] gi|309810189|ref|ZP_07704034.1| response regulator ArlR [Lactobacillus iners SPIN 2503V10-D] gi|312871771|ref|ZP_07731859.1| response regulator ArlR [Lactobacillus iners LEAF 3008A-a] gi|312872980|ref|ZP_07733040.1| response regulator ArlR [Lactobacillus iners LEAF 2062A-h1] gi|312874189|ref|ZP_07734223.1| response regulator ArlR [Lactobacillus iners LEAF 2052A-d] gi|312875576|ref|ZP_07735577.1| response regulator ArlR [Lactobacillus iners LEAF 2053A-b] gi|315653632|ref|ZP_07906552.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195] gi|325912125|ref|ZP_08174523.1| response regulator ArlR [Lactobacillus iners UPII 143-D] gi|325912567|ref|ZP_08174950.1| response regulator ArlR [Lactobacillus iners UPII 60-B] gi|329920102|ref|ZP_08276933.1| response regulator ArlR [Lactobacillus iners SPIN 1401G] gi|259167917|gb|EEW52412.1| DNA-binding response regulator [Lactobacillus iners DSM 13335] gi|308165468|gb|EFO67699.1| response regulator ArlR [Lactobacillus iners LactinV 09V1-c] gi|308168634|gb|EFO70738.1| response regulator ArlR [Lactobacillus iners LactinV 01V1-a] gi|308169461|gb|EFO71509.1| response regulator ArlR [Lactobacillus iners SPIN 2503V10-D] gi|311088830|gb|EFQ47273.1| response regulator ArlR [Lactobacillus iners LEAF 2053A-b] gi|311090259|gb|EFQ48669.1| response regulator ArlR [Lactobacillus iners LEAF 2052A-d] gi|311091502|gb|EFQ49886.1| response regulator ArlR [Lactobacillus iners LEAF 2062A-h1] gi|311092713|gb|EFQ51069.1| response regulator ArlR [Lactobacillus iners LEAF 3008A-a] gi|315488994|gb|EFU78636.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195] gi|325476075|gb|EGC79243.1| response regulator ArlR [Lactobacillus iners UPII 143-D] gi|325477988|gb|EGC81117.1| response regulator ArlR [Lactobacillus iners UPII 60-B] gi|328936556|gb|EGG33000.1| response regulator ArlR [Lactobacillus iners SPIN 1401G] Length = 241 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 11/151 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R P+I ++ S+ + D G DD + KP E+LAR+ A+ RR++ Sbjct: 61 LEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVQ 120 Query: 121 VSNNRA--ETGPIRV--FSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + G RV F+D R + L +RE +L L+ ++ V + Sbjct: 121 IEKRASGEAAGVQRVIRFNDLTIETANRIVHRGDKTVDLTKREYNLLMTLIEHKNNVVTR 180 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q+ I+G D +E NVVE ++ LR K+ Sbjct: 181 EQLLKKIWG-SDSKIETNVVEVYVRYLRNKI 210 >gi|254976474|ref|ZP_05272946.1| DNA-binding response regulator [Clostridium difficile QCD-66c26] gi|255093857|ref|ZP_05323335.1| DNA-binding response regulator [Clostridium difficile CIP 107932] gi|255315610|ref|ZP_05357193.1| DNA-binding response regulator [Clostridium difficile QCD-76w55] gi|255518270|ref|ZP_05385946.1| DNA-binding response regulator [Clostridium difficile QCD-97b34] gi|255651389|ref|ZP_05398291.1| DNA-binding response regulator [Clostridium difficile QCD-37x79] gi|260684447|ref|YP_003215732.1| hypothetical protein CD196_2714 [Clostridium difficile CD196] gi|260688106|ref|YP_003219240.1| hypothetical protein CDR20291_2761 [Clostridium difficile R20291] gi|306521216|ref|ZP_07407563.1| hypothetical protein CdifQ_16721 [Clostridium difficile QCD-32g58] gi|260210610|emb|CBA65237.1| putative uncharacterized protein [Clostridium difficile CD196] gi|260214123|emb|CBE06320.1| putative uncharacterized protein [Clostridium difficile R20291] Length = 204 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/161 (30%), Positives = 79/161 (49%), Gaps = 6/161 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S +P+I I+ S L+ G DD + KP + +LARV + +R+ S Sbjct: 47 LCRQIRNCSTIPIIFITARDSAIDELNGLTMGGDDYITKPYNLPLLLARVKNLLKRVDSS 106 Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + I + E Q V L R E +I+ YL N G V + + L+ Sbjct: 107 DKQKIKYREIILNLISATVEYQNAVIELSRTELKIMYYLFQNVGSIVPRIDLVEY---LW 163 Query: 182 DE--AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +++N + +I++LR+KLR D + +KR +GY I Sbjct: 164 DNHIHIDDNALSVNITRLREKLRGIGITDLIITKRGMGYRI 204 >gi|209966526|ref|YP_002299441.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodospirillum centenum SW] gi|209959992|gb|ACJ00629.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodospirillum centenum SW] Length = 234 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 17/142 (11%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR---------LKVSNNRAETGPIRVFSDGRDPE 141 +SG DD + KP E++AR+ A+ RR L+ ++ + RV +GRD Sbjct: 99 LNSGADDYIAKPFSPTELVARMRAVLRRAAPGLAEELLRFADVVMDLAAHRVRRNGRDVH 158 Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + F R+L + M + G+ ++ Q+ ++G D VE V+ HI +LRK L Sbjct: 159 LGPTEF-------RLLRHFMQHPGRVFSREQLLDVVWG-HDVYVEPRTVDVHIRRLRKAL 210 Query: 202 RNKLGFDPVDSKRFLGYSIDWN 223 D + + R GY++D N Sbjct: 211 NETDDQDLIRTVRSAGYALDQN 232 >gi|126740199|ref|ZP_01755888.1| two-component response regulator [Roseobacter sp. SK209-2-6] gi|126718654|gb|EBA15367.1| two-component response regulator [Roseobacter sp. SK209-2-6] Length = 227 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 10/144 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S+VP++ ++ + + G DD V KP RE++AR+ AI +R + Sbjct: 61 EVCRRIRQRSEVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIKAIAKRSRA 120 Query: 122 SNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + T P+ + DP+ + G+ L RE+ IL+ L G+ +K ++ Sbjct: 121 NG----TVPVNHGALTLDPQAHRCWLNGQEIALTAREQSILQLLTKAPGRLCSKPELIHH 176 Query: 177 IYGLFDEAVEENVVESHISKLRKK 200 I+G + V + ++SH+ LR K Sbjct: 177 IWGAGSQ-VSDRTLDSHLRNLRGK 199 >gi|27467038|ref|NP_763675.1| response regulator [Staphylococcus epidermidis ATCC 12228] gi|27314580|gb|AAO03717.1|AE016744_120 response regulator [Staphylococcus epidermidis ATCC 12228] Length = 222 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 5/151 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAE 127 S +P+I ++ +L T L F G D + KP + E++ R+ + + ++ N + Sbjct: 70 SNIPIIFLTAKDNLDTRLKCFSLGAKDYLPKPFYMEELIIRIKNVLNQSHSQSLTPNIKK 129 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 T + ++ D +V + ++E I++ L N +K QI+ +I ++ Sbjct: 130 TKELIIYYDTYRIDVNNMTIDITKKEFEIIKLLSLNPQYYFSKEQIYDSIN--LNKTGNT 187 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VV HI K+RKKL F+ +D+K +GY Sbjct: 188 QVVAEHIRKIRKKLSCYSRFEYIDTKWGVGY 218 >gi|300856229|ref|YP_003781213.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300436344|gb|ADK16111.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 224 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 2/151 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130 P++ ++ ++ + ++G DD ++KP E+LARV A+ RR + + + + G Sbjct: 72 HTPILMLTAKAEIEDRILGLNTGADDYLSKPFAMGELLARVHAMTRRKSEFAPSLLKVGN 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I + + + + L +E ++LE LM N ++ I+G +DE E NVV Sbjct: 132 ISLNKENYELSSKKSSLRLGNKEFQMLEMLMNNPKCLISTEHFMERIWG-YDEEAEINVV 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +IS LRKKL + ++S+R Y+++ Sbjct: 191 LVYISYLRKKLSSLGANVKINSRRDACYTLE 221 >gi|238790688|ref|ZP_04634451.1| KDP operon transcriptional regulatory protein kdpE [Yersinia frederiksenii ATCC 33641] gi|238721236|gb|EEQ12913.1| KDP operon transcriptional regulatory protein kdpE [Yersinia frederiksenii ATCC 33641] Length = 188 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 73/159 (45%), Gaps = 20/159 (12%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S +P+I +S S + + D+G DD ++KP E+LARV RR + + Sbjct: 30 LRQWSAIPIIVLSARNSEEDKVAALDAGADDYLSKPFGISELLARVRVALRR---HSGGS 86 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + P+ F+D R GE L E R+L L+AN GK + + Q+ + ++G Sbjct: 87 QESPLVNFADISVDLINRQVTRAGENLHLTPIEFRLLSALLANAGKVITQRQLLNQVWG- 145 Query: 181 FDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216 N VE H LR LR KL DP K L Sbjct: 146 ------PNYVE-HSHYLRIYMGHLRQKLEIDPTRPKHLL 177 >gi|205824668|dbj|BAG71485.1| response regulator [Lactococcus lactis] Length = 228 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 12/170 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ + IR +P+I +S + + ++ G DD + KP ++++A+V A +R + Sbjct: 62 EICKRIRREVSIPIIFVSAKDTEEDIVNGLGIGGDDYITKPFSLKQLVAKVEANIKREER 121 Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S R + G I + + R V G+ PL RE ILE L K + I Sbjct: 122 NKQAVQDFSEVRRDLGTITFYLEERRVCVNGQTIPLTSREYDILELLSRRTSKVYTREDI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + +Y + +A+ ++ E +I ++R K DP+ + R LGY W+ Sbjct: 182 YDEVYDEYADALFRSISE-YIYQIRNKF-APYNIDPIKTVRGLGYK--WH 227 >gi|169335320|ref|ZP_02862513.1| hypothetical protein ANASTE_01732 [Anaerofustis stercorihominis DSM 17244] gi|169258058|gb|EDS72024.1| hypothetical protein ANASTE_01732 [Anaerofustis stercorihominis DSM 17244] Length = 226 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 4/153 (2%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAE 127 H+ P++ ++ ++ + + G DD + KP +E++AR+ A+ RR ++ Sbjct: 70 HNNTPILLLTALDNIDDRVKGLNLGADDYLTKPFDTKELIARIKALSRRGSGSITEEVLH 129 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + + + + L ++E +LE LM N+ ++K I ++G+ A+ + Sbjct: 130 IGNVSLNVNNASLSIGDREETLTKKEANLLETLMKNKDNVLSKDYILDKVWGIDSYAI-D 188 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N VE +I LRKKL + V + R LGY++ Sbjct: 189 NSVEIYIHYLRKKLGSDADVKIV-TNRGLGYTL 220 >gi|30260805|ref|NP_843182.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525930|ref|YP_017279.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183643|ref|YP_026895.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165872685|ref|ZP_02217314.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635188|ref|ZP_02393504.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640906|ref|ZP_02399164.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170689014|ref|ZP_02880214.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708465|ref|ZP_02898907.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177652822|ref|ZP_02935195.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568540|ref|ZP_03021446.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227816479|ref|YP_002816488.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229601364|ref|YP_002865249.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684272|ref|ZP_05148132.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722076|ref|ZP_05183865.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254738737|ref|ZP_05196440.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254742051|ref|ZP_05199738.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754962|ref|ZP_05206996.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254762307|ref|ZP_05214151.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30254254|gb|AAP24668.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47501078|gb|AAT29754.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177570|gb|AAT52946.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164711546|gb|EDR17094.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511126|gb|EDR86514.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167529447|gb|EDR92198.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126586|gb|EDS95471.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170666999|gb|EDT17762.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172081856|gb|EDT66925.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560334|gb|EDV14313.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227006857|gb|ACP16600.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229265772|gb|ACQ47409.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 225 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + + V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQHAQIQYHGILWNEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D+ K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220 >gi|89894532|ref|YP_518019.1| hypothetical protein DSY1786 [Desulfitobacterium hafniense Y51] gi|219668964|ref|YP_002459399.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333980|dbj|BAE83575.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539224|gb|ACL20963.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 228 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 107/234 (45%), Gaps = 23/234 (9%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V DD+ +V+ I L + + FN L+ E ++ V I ++ + + + Sbjct: 3 ILVCDDDKEIVEAIRIYLAHEGYTIHKAFNGLQALEVIEEQTVHLV--IMDIMMPQMDGI 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 L +I R +P+I +S + + G DD + KP + E++ARV + RR Sbjct: 61 RALMKI-REERNIPVIMLSAKSEDTDKIMGLNMGADDYITKPFNPLELIARVKSQLRRYV 119 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 L+ N ++G + + + + V GE L + +IL+ L AN G+ + QI+ Sbjct: 120 TLGSLETKTNVYQSGGLMIDDESKCVTVDGEEVKLTPVQYKILKLLTANAGRVFSIDQIY 179 Query: 175 SAIYGLFDEAV--EENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221 ++ +EA EN V HI K+R+K+ +P + K +GY I+ Sbjct: 180 ENVW---NEAAFSAENTVAVHIRKIREKIE----INPKEPKYLKVVWGIGYKIE 226 >gi|289623891|ref|ZP_06456845.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648450|ref|ZP_06479793.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. aesculi str. 2250] gi|298486910|ref|ZP_07004964.1| Response regulator BaeR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158575|gb|EFH99641.1| Response regulator BaeR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868308|gb|EGH03017.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 227 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 3/167 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +++ + +R+ S VP++ I+ L D G DD + KP RE++ARV AI Sbjct: 63 GRDGMDICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR S G ++V G L E R+L + G+ ++ + Sbjct: 123 RRSSSSEPHTPKG-LQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +Y V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 182 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 227 >gi|260888931|ref|ZP_05900194.1| transcriptional activator protein Irlr [Leptotrichia hofstadii F0254] gi|260861378|gb|EEX75878.1| transcriptional activator protein Irlr [Leptotrichia hofstadii F0254] Length = 227 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 2/159 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 + RI ++VP++ ++ ++ + D G DD + KP E++AR+ + RR Sbjct: 63 IKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNSGN 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++N ++V D + + L RE ILEYL+ N+GK +++ +I I+ + Sbjct: 123 ADNVVTIANLKVDLDAKTVFRDDLLIKLSGREYSILEYLIRNKGKILSRERIEDHIWN-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D NV++ +I LRKK+ + + + R LGY + Sbjct: 182 DYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVL 220 >gi|209364040|ref|YP_001424665.2| transcriptional regulatory protein [Coxiella burnetii Dugway 5J108-111] gi|207081973|gb|ABS77180.2| transcriptional regulatory protein [Coxiella burnetii Dugway 5J108-111] Length = 232 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 107/226 (47%), Gaps = 17/226 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + DG A G +++ + + SS E I L L+ Sbjct: 13 LLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRSGLD 72 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR + P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 73 VLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR--- 129 Query: 122 SNNRAETGPIRVFSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S RA+ PI D DP ++ + + RRE +L+ L+ N G+ +++ Q+ Sbjct: 130 SKERAK--PIISHGDITLDPASHVVTLKKKEVMVSRREFALLQKLLENAGRVISREQLNQ 187 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +YG + E ++ N +E HI LRK+ KL + + R +GY ++ Sbjct: 188 TLYG-WGENIDSNALEVHIHNLRKRFGAKL----IRTIRGVGYMVE 228 >gi|194467231|ref|ZP_03073218.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|194454267|gb|EDX43164.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] Length = 239 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 13/159 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R HSQVP+I IS + +G DD + KP +LA++ A+ RR K + + Sbjct: 80 VRKHSQVPIIVISAAEIDTNVMHAVAAGADDYIMKPFAMTVLLAKIQALLRRNKQTTDAE 139 Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E P+ + Q L E +L+ L+++R K V+K Q+ ++ Sbjct: 140 EIMWDHNSFNPLTNILTNENGTAQ-----LTPTEGAMLQVLLSHRNKTVSKEQLLQWLWQ 194 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + EN + +IS+LR KL + ++R LGY Sbjct: 195 -GGKYLNENTLNVNISRLRTKLSTIGLRQCIHTERGLGY 232 >gi|109453300|gb|ABG34130.1| PhoP [Salmonella enterica subsp. arizonae] gi|109453304|gb|ABG34132.1| PhoP [Salmonella enterica subsp. arizonae] Length = 213 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 71/141 (50%), Gaps = 2/141 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P++ ++ Q ++ SG DD V KP H E++AR+ A+ RR +++ P Sbjct: 73 LPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSGLASQVINIPPF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 +V R+ V E+ L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 133 QVDLSRRELSVNEEIIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 191 Query: 192 SHISKLRKKLRNKLGFDPVDS 212 + +LRKK++ + D + + Sbjct: 192 VLMGRLRKKIQAQYPHDVITT 212 >gi|89096806|ref|ZP_01169698.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088821|gb|EAR67930.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 198 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 10/163 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L +++ S +P+I ++ + D G DD + KP RE+L+R+ ++ RR Sbjct: 36 DLCSLVKKQSDLPVIFLTAMDEEVNVVMGLDMGADDYITKPFRVRELLSRIRSVLRRYDK 95 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + T I V + GE L E R+L ++G+ + ++Q+ I+ + Sbjct: 96 QDRQTVTFQAITVHTGEGKVYKHGEEIQLTALEYRLLLIFANHKGQVLTRSQLLDKIWDV 155 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 + V +N + +I +LR+KL + DP + + R LGY Sbjct: 156 AGDFVNDNTLTVYIKRLREKLED----DPQKPSIIKTVRGLGY 194 >gi|308067144|ref|YP_003868749.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305856423|gb|ADM68211.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 228 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 71/130 (54%), Gaps = 5/130 (3%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPR 151 G DD V KP E+LAR+ A R + + E GP +V ++ Q +V L Sbjct: 100 GADDYVVKPFSFNELLARIEARLRN-QFPDLLGEVVHGPFQVDDRRKEIRYQSQVLELSP 158 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 E +L++L+ N G ++K++I ++G +D E+N+VE +I LR+KL++K + Sbjct: 159 TEYELLKFLVLNHGIVLSKSRILDRVWG-YDFGGEDNIVEVYIRSLREKLKDK-EHRVIR 216 Query: 212 SKRFLGYSID 221 + R +GY +D Sbjct: 217 TLRGVGYRVD 226 >gi|293400081|ref|ZP_06644227.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306481|gb|EFE47724.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 86/200 (43%), Gaps = 21/200 (10%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L +GYI D+G E + +D+ ++ + G + R IR Sbjct: 22 LSNEGYIVNEADNGA-----------EAITKCEAQDLIILDIMM--PGMDGFKTCRRIRE 68 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-------- 121 + VP++ ++ Q D F+SG DD + KP + E+L+RV A+ RR V Sbjct: 69 LTNVPILFLTSKTLDQDKEDGFNSGGDDYLIKPFSYSELLSRVNALIRRFYVYRGKSNIE 128 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N E ++V + V E L E RIL+ L+ N + + +++ +I+ Sbjct: 129 ESNIIERNDLKVDQNSNRVWVGDEEVNLTEIEYRILQLLITNPKRVFSNKELYESIWDES 188 Query: 182 DEAVEENVVESHISKLRKKL 201 N + HI LRKKL Sbjct: 189 YLYTANNTIMVHIRNLRKKL 208 >gi|184158146|ref|YP_001846485.1| response regulator [Acinetobacter baumannii ACICU] gi|332872696|ref|ZP_08440663.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] gi|183209740|gb|ACC57138.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|310756669|gb|ADP20467.1| AdeR [Acinetobacter baumannii] gi|310756672|gb|ADP20469.1| AdeR [Acinetobacter baumannii] gi|310756675|gb|ADP20471.1| AdeR [Acinetobacter baumannii] gi|310756678|gb|ADP20473.1| AdeR [Acinetobacter baumannii] gi|310756681|gb|ADP20475.1| AdeR [Acinetobacter baumannii] gi|310756684|gb|ADP20477.1| AdeR [Acinetobacter baumannii] gi|310756687|gb|ADP20479.1| AdeR [Acinetobacter baumannii] gi|310756690|gb|ADP20481.1| AdeR [Acinetobacter baumannii] gi|310756693|gb|ADP20483.1| AdeR [Acinetobacter baumannii] gi|310756696|gb|ADP20485.1| AdeR [Acinetobacter baumannii] gi|310756699|gb|ADP20487.1| AdeR [Acinetobacter baumannii] gi|310756702|gb|ADP20489.1| AdeR [Acinetobacter baumannii] gi|310756705|gb|ADP20491.1| AdeR [Acinetobacter baumannii] gi|310756708|gb|ADP20493.1| AdeR [Acinetobacter baumannii] gi|310756714|gb|ADP20497.1| AdeR [Acinetobacter baumannii] gi|322508464|gb|ADX03918.1| AdeR [Acinetobacter baumannii 1656-2] gi|323518087|gb|ADX92468.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332739090|gb|EGJ69950.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] Length = 247 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122 IR +Q P+I ++ + G DD V KP + E++ARV A+ RR KV+ Sbjct: 78 IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQFANKVT 137 Query: 123 NNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N I + +D + E + L E +I+ +++ K + ++ + + Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D E V+SH+SKLRKKL + F + + R +GY +D Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238 >gi|182626720|ref|ZP_02954461.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium perfringens D str. JGS1721] gi|177907943|gb|EDT70532.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium perfringens D str. JGS1721] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 17/198 (8%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 LV DGY + + G L G EF++ + DVS G + IR Sbjct: 22 LVDDGYDVITFETGDRLLG----EFKQKIPDLVILDVSM-------PGTDGFSICSSIRK 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-----KVSNN 124 S VP+I ++ + + F G DD KP ++ RV A+ +R+ K N Sbjct: 71 ISNVPIILLTARDTDADYITGFTLGCDDYFTKPFSPVKLTMRVKAMLKRISNEKEKAKNE 130 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 G I + + + L E +L Y++ N+ K V++ ++ + I+G + Sbjct: 131 EITFGDIVLLPAKKSAYCKEHEIKLTNTEFELLYYMIENKEKAVSREELLNVIWG-YSSE 189 Query: 185 VEENVVESHISKLRKKLR 202 VE V + I +LRKK+R Sbjct: 190 VETRVTDDTIKRLRKKIR 207 >gi|120434488|ref|YP_860186.1| two-component system response regulator [Gramella forsetii KT0803] gi|117576638|emb|CAL65107.1| two-component system response regulator [Gramella forsetii KT0803] Length = 227 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 8/131 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPIRVFSDGRDPEVQGEVF 147 FD+G DD + KPI + ++++V A+ RR + S+N + G I + + G Sbjct: 98 FDAGADDYITKPIKPKVLVSKVKALLRRYREEDTSSNIVKLGDITINREEYKIVQNGNEM 157 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 LPR+E +L L + GK + I ++G D V ++ HI +KLR K+G Sbjct: 158 ALPRKEFELLSLLASKPGKVFKREDILDNVWG-NDIVVGGRTIDVHI----RKLREKIGD 212 Query: 208 DPVDSKRFLGY 218 D + + + +GY Sbjct: 213 DKIKTIKGVGY 223 >gi|108797145|ref|YP_637342.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119866230|ref|YP_936182.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|108767564|gb|ABG06286.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119692319|gb|ABL89392.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] Length = 243 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 79/153 (51%), Gaps = 4/153 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128 + +P+ +S ++ + ++G DD + KP E++AR+ A+ RR S+ ++T Sbjct: 88 NDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHSDRPSDTMT 147 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 GP+ + + R V GE L +RE +L L N G +++ ++ ++G +D V+ Sbjct: 148 VGPLTIDTARRLVFVDGERVDLTKREFDLLAVLAENNGVVLSRQRLLELVWG-YDFDVDT 206 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NV + IS LR+KL + + R +GY + Sbjct: 207 NVADVFISYLRRKLERDGLPRVIHTVRGIGYVL 239 >gi|24113461|ref|NP_707971.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 2a str. 301] gi|30063524|ref|NP_837695.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 2a str. 2457T] gi|110806049|ref|YP_689569.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 5 str. 8401] gi|24052492|gb|AAN43678.1| transcriptional response regulatory protein (sensor BaeS) [Shigella flexneri 2a str. 301] gi|30041777|gb|AAP17504.1| transcriptional response regulatory protein (sensor BaeS) [Shigella flexneri 2a str. 2457T] gi|110615597|gb|ABF04264.1| transcriptional response regulatory protein [Shigella flexneri 5 str. 8401] gi|281601525|gb|ADA74509.1| Transcriptional response regulatory protein [Shigella flexneri 2002017] gi|313649874|gb|EFS14294.1| transcriptional regulatory protein baeR [Shigella flexneri 2a str. 2457T] gi|332755913|gb|EGJ86267.1| transcriptional regulatory protein baeR [Shigella flexneri K-671] gi|332756855|gb|EGJ87200.1| transcriptional regulatory protein baeR [Shigella flexneri 2747-71] gi|332766432|gb|EGJ96641.1| response regulator [Shigella flexneri 2930-71] gi|333002115|gb|EGK21680.1| transcriptional regulatory protein baeR [Shigella flexneri VA-6] gi|333002508|gb|EGK22070.1| transcriptional regulatory protein baeR [Shigella flexneri K-218] gi|333017079|gb|EGK36400.1| transcriptional regulatory protein baeR [Shigella flexneri K-304] Length = 240 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S VP++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167 I RR K + AE+ P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|150390092|ref|YP_001320141.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949954|gb|ABR48482.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 90/201 (44%), Gaps = 19/201 (9%) Query: 9 ALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 +L +DGY L DG +L+ FN F+ + + LE+ + I Sbjct: 21 SLEQDGYEILSASDGEEALDKFNKGSFDLIILDLMLPKIDG------------LEVCQTI 68 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----VS 122 R SQ P+I ++ T + + G DD + KP + E+ AR+ A+ RR + V Sbjct: 69 RQTSQTPIIMLTAKGEDMTKILGLEYGADDYMTKPFNILELKARIKAVLRRAQSKEGNVG 128 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + GR + GE L +E +L L +N GK ++ + I+G ++ Sbjct: 129 ERVIHIDDFKINTMGRKVSIHGEEVNLTAKEFDLLLLLASNHGKVYSREALLEIIWG-YE 187 Query: 183 EAVEENVVESHISKLRKKLRN 203 + V+ H+ +LR+K+ + Sbjct: 188 YFGDLRTVDVHVRRLREKVES 208 >gi|332638568|ref|ZP_08417431.1| DNA-binding response regulator [Weissella cibaria KACC 11862] Length = 237 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 15/189 (7%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D+ ++ L GK ++L R +R +++P+I I+ + + G DD V KP Sbjct: 47 DLMLLDVMLPGKSG--VDLTRELRGEQNRIPIIMITALDDEVDKILGLEIGADDYVTKPF 104 Query: 104 HHREILARVAAIYRRL---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154 RE++ARV A+ RRL K + G + + D + QGE+ L +E Sbjct: 105 SPREVIARVRAVLRRLDKQQEPQVAKTPTKLKQFGNLTIDFDKMVVQRQGEIVKLTPKEY 164 Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK- 213 +L Y+ G+ + + I ++G + +V+ H+S LR K+ + PV K Sbjct: 165 ELLAYMADREGRVLDRETILHGVWGYDYAGPDTRMVDMHLSHLRDKVEDDPKH-PVHLKT 223 Query: 214 -RFLGYSID 221 R GY D Sbjct: 224 VRGFGYRFD 232 >gi|300723604|ref|YP_003712909.1| response regulator in two-component regulatory system with PhoQ [Xenorhabdus nematophila ATCC 19061] gi|297630126|emb|CBJ90763.1| response regulator in two-component regulatory system with PhoQ, regulates gene expression at low [Mg+] (OmpR family) [Xenorhabdus nematophila ATCC 19061] Length = 227 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 100/222 (45%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ G ++ + + ++ D++ I+ L GE L Sbjct: 3 ILIVEDNALLRHHLTVQLRGIGHQVDAAENAKEADYYLKENHPDIAIIDLGL--PGEDGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R R +P++ ++ S Q + ++G DD V KP H EI AR+ A+ RR Sbjct: 61 SMLRRWRNEQINLPILVLTARESWQEKVAVLNAGADDYVTKPFHLEEINARIQALMRRNS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ P + ++ V L E I+E LM N GK V+K + +Y Sbjct: 121 GLASQIVALSPFLIDLSRKEFSVNETNIRLTAFEYTIIETLMRNNGKVVSKESLMRQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E + ++ + +LRKK+ N+ + + + R GY D Sbjct: 181 -DAELRESHTIDVLMGRLRKKILNQWPEEVIVTVRGQGYRFD 221 >gi|237808666|ref|YP_002893106.1| DNA-binding transcriptional regulator BasR [Tolumonas auensis DSM 9187] gi|237500927|gb|ACQ93520.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] Length = 220 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 98/219 (44%), Gaps = 18/219 (8%) Query: 16 IALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSAIEAFL-----------IGKGEKVLEL 63 I L DD + L G +LE +++ AR A L + G+ + L Sbjct: 3 ILLIEDDALLLNGLQKALEQQQYCCDIARSLSEARRYTLDDYDLIILDLGLPDGDGLTLL 62 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLKVS 122 + + P++ ++ SL + D G DD + KP E+ ARV A+ RR + + Sbjct: 63 KQWRQQGCSQPVLILTARDSLDDRVKGLDQGADDYLIKPFALAELQARVRALMRRRFEKA 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N ++G +++ + + + L R E IL LM + GK V + ++ +Y D Sbjct: 123 ENALQSGALKLDMNLNQVWLHEQELTLTRMEYAILRRLMLHAGKTVQRERLQQDLYDWND 182 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E + N +E +I LR+ KLG D + + R GY ++ Sbjct: 183 E-IGSNTLEVYIHHLRR----KLGSDSIRTIRGEGYRLE 216 >gi|150005501|ref|YP_001300245.1| two-component system response regulator [Bacteroides vulgatus ATCC 8482] gi|254884052|ref|ZP_05256762.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA] gi|294778703|ref|ZP_06744122.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|319640726|ref|ZP_07995439.1| two-component system response regulator [Bacteroides sp. 3_1_40A] gi|149933925|gb|ABR40623.1| two-component system response regulator [Bacteroides vulgatus ATCC 8482] gi|254836845|gb|EET17154.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA] gi|294447359|gb|EFG15940.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|317387538|gb|EFV68404.1| two-component system response regulator [Bacteroides sp. 3_1_40A] Length = 225 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 4/150 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G +LE ++ H + +I +S S++ + + G DD + KP H E+ AR+ + Sbjct: 57 GSGLDLLE--KLKEMHKRENVIILSAKDSIEDKVLGLELGADDYLPKPFHLVELNARIKS 114 Query: 115 IYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR + N + G I +F D V G+ L R+E IL Y M G+ V K+ + Sbjct: 115 VIRRHQQGGENSIKYGNIEIFPDKYGVTVAGKKLELNRKEYDILVYFMNRPGRLVNKSTL 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLR 202 +++G D+ + + + I LRK+L+ Sbjct: 175 AESVWGDHIDQVDNFDFIYAQIKNLRKRLK 204 >gi|126432768|ref|YP_001068459.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|126232568|gb|ABN95968.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 243 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 79/153 (51%), Gaps = 4/153 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128 + +P+ +S ++ + ++G DD + KP E++AR+ A+ RR S+ ++T Sbjct: 88 NDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHSDRPSDTMT 147 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 GP+ + + R V GE L +RE +L L N G +++ ++ ++G +D V+ Sbjct: 148 VGPLTIDTARRLVFVDGERVDLTKREFDLLAVLAENNGVVLSRQRLLELVWG-YDFDVDT 206 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NV + IS LR+KL + + R +GY + Sbjct: 207 NVADVFISYLRRKLERDGLPRVIHTVRGIGYVL 239 >gi|58583289|ref|YP_202305.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625120|ref|YP_452492.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188578384|ref|YP_001915313.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas oryzae pv. oryzae PXO99A] gi|58427883|gb|AAW76920.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369060|dbj|BAE70218.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522836|gb|ACD60781.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas oryzae pv. oryzae PXO99A] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 14/182 (7%) Query: 33 EFEEWLQSSAREDVSAI-----EAFLIG---KGEKVLELPRIIRAHS---QVPLIGISDY 81 EFE ARE +AI + L+ G L+L R R +P+I ++ Sbjct: 26 EFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLDLARRWRKEQLTRDIPIIMLTAR 85 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE 141 + ++GVDD V KP RE+LAR+ A+ RR + + R+ DG Sbjct: 86 GEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTREDDEDGSVAVGRLRIDGAAHR 145 Query: 142 VQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 V P+P E R+L + M + + +TQ+ ++G VEE ++ HI +LRK Sbjct: 146 VFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVWG-GSVYVEERTIDVHIRRLRK 204 Query: 200 KL 201 L Sbjct: 205 TL 206 >gi|304322363|ref|YP_003856006.1| two-component response regulator [Parvularcula bermudensis HTCC2503] gi|303301265|gb|ADM10864.1| two-component response regulator [Parvularcula bermudensis HTCC2503] Length = 224 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 5/161 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A ++P++ ++ L ++ D+G DD + KP E AR+ A+ RR ++ Sbjct: 63 LKRLRAAGRKMPVLLLTAMGGLDDRVEGLDAGADDYLVKPFAFSEAYARLNALVRRPPIA 122 Query: 123 NNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + D R G L +E +LE L+ N+ + + KT + ++ Sbjct: 123 GNPTTLTAADLHMDLIARTVSRGGVSLDLGPKEFLLLEILLRNKNRVMTKTMLLERVWSF 182 Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + ++VE+HIS+LR K+ V++ R GY I Sbjct: 183 HFDP--QTSLVETHISRLRAKIDRPFASALVETVRGAGYVI 221 >gi|297518448|ref|ZP_06936834.1| DNA-binding transcriptional regulator PhoP [Escherichia coli OP50] Length = 213 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/204 (24%), Positives = 99/204 (48%), Gaps = 5/204 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ + ++ + D++ ++ L E L Sbjct: 4 LVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGL--PDEDGLS 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R++ +P++ ++ S Q ++ +G DD V KP H E++AR+ A+ RR Sbjct: 62 LIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ + EV L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNK 204 E E + ++ + +LRKK++ + Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQ 204 >gi|220919230|ref|YP_002494534.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] gi|219957084|gb|ACL67468.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] Length = 230 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 6/133 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAET-GPIRVFSDGRDPEVQGEVF 147 F+ G DD V KP RE++ R+ A+ RR + S E+ GPIRV + V G Sbjct: 94 FELGADDYVTKPFSVRELVLRLKAVLRRAGARPSERPPESVGPIRVDVESHRVYVDGAEV 153 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E ++L LM+ G+ ++ Q+ ++ + E VE V++H+ +LR+KL + G Sbjct: 154 VLTPLEFKLLTTLMSRLGRVQSRDQLLEDVWEMSAE-VETRTVDTHVKRLREKLGS--GR 210 Query: 208 DPVDSKRFLGYSI 220 D +++ R +GY + Sbjct: 211 DLLETVRGIGYRL 223 >gi|60677303|ref|YP_209661.1| DNA-binding response regulator [Clostridium perfringens] gi|60417938|dbj|BAD90605.1| DNA-binding response regulator [Clostridium perfringens] Length = 217 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 83/161 (51%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + IR S++P++ ++ + + +D F + D V KP + AR+ ++ ++ Sbjct: 59 LDVLKEIRKKSKLPILILTAFSDEEYKIDAFTNFADGYVEKPFSLPVLKARIDSLIKKNF 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E I V + ++ GE + +E IL+YL+ N G+ + + QI ++ Sbjct: 119 GQIEKFEYKNIDVNFNSYTVKINGENIYIYAKELEILKYLVDNEGQVLTRMQIIDNVWKE 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL+ D + + R +GY ++ Sbjct: 179 TEEIPYDRVIDVYIKELRKKLK----LDCITTIRNVGYKLE 215 >gi|268590467|ref|ZP_06124688.1| DNA-binding response regulator TctD [Providencia rettgeri DSM 1131] gi|291314147|gb|EFE54600.1| DNA-binding response regulator TctD [Providencia rettgeri DSM 1131] Length = 222 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 83/160 (51%), Gaps = 5/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ + H + P++ ++ + + ++G DD + KP E+ AR+ A+ RR + Sbjct: 63 LAQMRKRHQETPVLLLTANSDVADRVQGLNAGADDYLTKPFDIAELEARLRALLRRSQGQ 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N ++ + + + + E L RE +L L RG+ V+K Q+F ++ L D Sbjct: 123 VNESQQFGLLSYHEDGYFLLGEEPLGLTPREYAVLNTLFHRRGRPVSKMQLFEQVFSLSD 182 Query: 183 EAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 EA ++ +E ++ ++RKKL G D +++ R LGY ++ Sbjct: 183 EANLQS-IELYVHRVRKKLA---GSDVNINTLRGLGYRLE 218 >gi|255283546|ref|ZP_05348101.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bryantella formatexigens DSM 14469] gi|255265808|gb|EET59013.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bryantella formatexigens DSM 14469] Length = 223 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 7/159 (4%) Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +IR S VP+I ++ + + + D DD + KP +L ++AA+ RR ++ Sbjct: 66 VIRQKSNVPIIMLTALDNEENQIKGLDLQADDYITKPFSMPVLLRKIAAVLRRSSRQDDV 125 Query: 126 AETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +T + + DG E L RE IL L+ ++G+ + + + ++ ++ Sbjct: 126 PQTINYKDLTLDLDGYKVYNGQESVDLTPREFEILRELLTHKGRILTRQNLLQTLWK-YE 184 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 EE ++++HI LRKKL D +++ R +GY ID Sbjct: 185 FFGEERIIDTHIKNLRKKLGTA---DYIETIRGVGYRID 220 >gi|296169791|ref|ZP_06851406.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895585|gb|EFG75284.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 14/208 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59 + V+ DDRA V++ +G S+E + LE E + +S R D ++ + Sbjct: 3 ILVVDDDRA-VRESLRRSLSFNGYSVELAHDGLEALEMI-ASDRPDALVLDVMM--PRLD 58 Query: 60 VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 LE+ R +R+ +P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR Sbjct: 59 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQ 172 K + AE+ ++ FSD V EV L R E +LE L+AN + + +++ Sbjct: 119 TKPDDEDAESVAMK-FSDLTLDPVTREVTRGQRQISLTRTEFALLEMLIANPRRVLTRSR 177 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKK 200 I ++G FD N +E ++ LR+K Sbjct: 178 ILEEVWG-FDFPTSGNALEVYVGYLRRK 204 >gi|222836662|gb|EEE75055.1| predicted protein [Populus trichocarpa] Length = 234 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 8/160 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNN 124 +A + VPL+ +S + + G DD + KP RE++AR A+ R RL+ + Sbjct: 72 QAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLRRAQRLQPAPT 131 Query: 125 RAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +FS G+ +QG L RRE ++L L+ G+ +++ + +I+G Sbjct: 132 ASAAPADAMFSIDTQGQRVRMQGVALDLTRREYQLLRCLLERPGRILSREFLLDSIWG-Q 190 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 D + V++H+ LR KLR + D + + R +GYS+ Sbjct: 191 DSDSTDRTVDTHVKTLRAKLRAQAPQQDFITTHRGMGYSL 230 >gi|332711034|ref|ZP_08430969.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332350160|gb|EGJ29765.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 224 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 13/166 (7%) Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R +QVP+I ++ + + D+G DD V KP E+LARV A RR Sbjct: 63 EICRRLRTTGNQVPIILLTAKDEVSDRVSGLDAGADDYVVKPFSVEELLARVRAHLRR-- 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIF 174 N+ E I F+D EV+ L +E +LEYL+A+ + + + QI Sbjct: 121 ---NQTEDPNILQFADLSLNHSTREVYRGQRLIELTVKEFDLLEYLLAHPRQVLTREQIL 177 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D + N++E +I LR KL V + R +GY + Sbjct: 178 ERVWG-YDFMGDSNIIEVYIRYLRLKLEANNESRLVQTVRGVGYVL 222 >gi|261419126|ref|YP_003252808.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319765943|ref|YP_004131444.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261375583|gb|ACX78326.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317110809|gb|ADU93301.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 224 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 81/161 (50%), Gaps = 2/161 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R + VP++ ++ + + F+ G DD + KP E++ARV A+ +R ++ Sbjct: 62 ELCRELRDYDDVPILMLTAKGETKQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 121 Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ + G + + + + + LP +E +L L + GK + ++ I+G Sbjct: 122 TTSQIVQIGHLSLNRKTYECRLGDQEITLPPKEFELLFKLASYPGKTFTRDELIEQIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D +E V+ HI +LR++ + + R LGY ++ Sbjct: 181 YDYEGDERTVDVHIKRLRERFAQPDSPFSIRTIRGLGYRLE 221 >gi|221066592|ref|ZP_03542697.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220711615|gb|EED66983.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 238 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 15/223 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + D D+G LE + ++ L R A+ L+ G L Sbjct: 7 ILLVEDDAHIADLLSLHLRDEG--LEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGL 64 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R RA ++ P+I IS S + + G DD + KP E++ARV A+ RR+ Sbjct: 65 EICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVD 124 Query: 121 --VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + R E+G + V RD + G L RE +L + GK ++ + Sbjct: 125 ALAQSARLESGSLSVNGLVMDPVARDASLNGRHLDLTPREFDLLYFFARQSGKVFSRMDL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 +A++G E E+ V +HI++LR K+ +P R L Sbjct: 185 LNAVWGYQHEGY-EHTVNTHINRLRAKVER----NPAQPTRIL 222 >gi|110801527|ref|YP_699386.1| vncR, response regulator [Clostridium perfringens SM101] gi|110682028|gb|ABG85398.1| vncR, response regulator [Clostridium perfringens SM101] Length = 217 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 83/161 (51%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + IR S++P++ ++ + + +D F + D V KP + AR+ ++ ++ Sbjct: 59 LDVLKEIRKKSKLPILILTAFSDEEYKIDAFTNFADGYVEKPFSLPVLKARIDSLIKKNF 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E I V + ++ GE + +E IL+YL+ N G+ + + QI ++ Sbjct: 119 GQIEKFEYKNIDVNFNSYTVKINGENIYIYAKELEILKYLVDNEGQVLTRMQIIDNVWKE 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL+ D + + R +GY ++ Sbjct: 179 TEEIPYDRVIDVYIKELRKKLK----LDCITTIRNVGYKLE 215 >gi|88319801|emb|CAH10125.1| putative repressor-response regulator [Streptomyces sp. SCC 2136] Length = 283 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 81/148 (54%), Gaps = 12/148 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLD---FFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R +RA S V +I ++ + T LD +G DD V KP E++AR+ A+ R Sbjct: 122 IEICRFVRAASGVGVIVVT---ARDTELDRVLSLKAGADDYVVKPYSLPELMARIEAVMR 178 Query: 118 R---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR-GKRVAKTQI 173 R L ++ +GP+R+ S R+ + E + R+E +L YL+A+R G V++ QI Sbjct: 179 RVRPLPLTTEVISSGPLRIDSRTREIRLGDEPVEVTRKEFDLL-YLLASRPGSVVSRKQI 237 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 + ++G + +++H+S LR KL Sbjct: 238 MTLVWG-DSRSQPGRTIDTHVSSLRSKL 264 >gi|295107805|emb|CBL21758.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 230 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL------- 119 IR + +P+I +S + + G DD V KP + E++ARV + RR Sbjct: 67 IREKNALPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQLGAAA 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N ETG + + D ++ V GEV L E RIL L+ N+G+ + QI+ +I+ Sbjct: 127 EKRGNIYETGGLMIDDDRKEVTVDGEVVKLTPIEYRILLLLVKNQGRVFSINQIYESIWE 186 Query: 180 LFDEAV-EENVVESHISKLRKKL 201 +EA+ +N V HI +R+K+ Sbjct: 187 --EEAIAADNTVAVHIRHIREKI 207 >gi|282882337|ref|ZP_06290965.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B] gi|281297758|gb|EFA90226.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B] Length = 233 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 25/207 (12%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKV---LELPRI--------IRAHSQVPLIGISD 80 LE E + A + + AIE F + + L +PR+ +R S VP+I +S Sbjct: 23 LENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRLSGEEAIKKLRDISFVPIIILSA 82 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-----ETGPIRVFS 135 + + G DD + KP + E++ARV + RR +N A + G I++ + Sbjct: 83 KSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRRYHSYDNLASSEIIQIGNIKLNT 142 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 + V ++ L E +ILE+LM N K + I+ ++ + A+E V HI Sbjct: 143 FEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESIYEHVWN--EPAIEAKTVTVHIR 200 Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++R+K+ VD KR + + W Sbjct: 201 RIREKIE-------VDPKRPMYIQVAW 220 >gi|237744968|ref|ZP_04575449.1| two-component response regulator czcR [Fusobacterium sp. 7_1] gi|256028433|ref|ZP_05442267.1| two-component response regulator czcR [Fusobacterium sp. D11] gi|289766356|ref|ZP_06525734.1| two-component system response regulator czcR [Fusobacterium sp. D11] gi|229432197|gb|EEO42409.1| two-component response regulator czcR [Fusobacterium sp. 7_1] gi|289717911|gb|EFD81923.1| two-component system response regulator czcR [Fusobacterium sp. D11] Length = 224 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 77/150 (51%), Gaps = 4/150 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAET 128 ++ P++ ++ +++ + D G DD + KP E+LAR+ AI RR K N N + Sbjct: 71 NETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRR-KYGNVSNELQI 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 + V + + G+ L +E +LEYL+ N+G+ +++ +I ++ E E N Sbjct: 130 DDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWDYAYEG-ESN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +++ I +RKK+ + +KR LGY Sbjct: 189 IIDVLIKNIRKKIDLGNSKPLIHTKRGLGY 218 >gi|229116660|ref|ZP_04246046.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228666832|gb|EEL22288.1| Two-component response regulator [Bacillus cereus Rock1-3] Length = 228 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 9/149 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----- 117 + R IR S VP+I ++ TL F+ G DD V KP +LAR + Sbjct: 64 VCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYSS 123 Query: 118 --RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ ++ +G I + R + GE L E IL Y M N+G +++ Q+ + Sbjct: 124 AVKVLTADTLTSSG-IHLHFPSRTVTIDGEDISLTHTEFEILTYFMQNQGIVISREQLIN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK 204 I+G ++ A ++ + SHI LR KL K Sbjct: 183 KIFG-YEFAGDDRTINSHIRNLRHKLGQK 210 >gi|332139783|ref|YP_004425521.1| transcriptional regulator [Alteromonas macleodii str. 'Deep ecotype'] gi|327549805|gb|AEA96523.1| transcriptional regulator [Alteromonas macleodii str. 'Deep ecotype'] Length = 214 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 +G DD ++KP E+ AR+ ++ RR N++ + + + + L Sbjct: 78 AGADDYLSKPFSFDELTARLLSLMRRGAANCLNDQVTINSLTLNIQFKTLSYNNGIINLT 137 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 E +I+E + NR K V + I G +D + +N +E+H+S RKK+R P+ Sbjct: 138 PNEYKIVECIFLNRHKIVTSEMLSEFISGSYDH-ISKNAIEAHLSSARKKVRESGASLPI 196 Query: 211 DSKRFLGYSI 220 SKR GY + Sbjct: 197 KSKRGFGYRV 206 >gi|229918113|ref|YP_002886759.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229469542|gb|ACQ71314.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 7/161 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP+I ++ + G DD + KP RE+LAR+ A RR + Sbjct: 71 IREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHSFSKEQ 130 Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 E G + + +GR V+G+ L R+E +L + N K ++ Q+ I+G + Sbjct: 131 EATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLDQIWGT-E 189 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 V++HI LR KL G+ + + +GY + N Sbjct: 190 YHGNLRTVDTHIKTLRLKLGEAGGY--IQTVWGIGYKFEAN 228 >gi|126651205|ref|ZP_01723415.1| two-component response regulator [Bacillus sp. B14905] gi|126592043|gb|EAZ86109.1| two-component response regulator [Bacillus sp. B14905] Length = 225 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 83/157 (52%), Gaps = 3/157 (1%) Query: 67 IRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 IR++ + +P++ ++ + F G DD + KP E++ RV +I +R +++ ++ Sbjct: 67 IRSYNTDLPILMLTAKGETAQKVKGFHLGTDDYLVKPFEPAELIVRVKSILKRYRIALSQ 126 Query: 126 -AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E G +++ + ++ GE+ L +E +L L + GK ++ Q+ I+G +D Sbjct: 127 VVEAGNVKLDRHTHEVDLNGEIIVLRLKEFELLFTLASYVGKTFSREQLIEEIWG-YDYE 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ HI ++R++ ++ + + R LGY ++ Sbjct: 186 GDERTVDVHIKRIRERFPQEISGFAIRTIRGLGYRLE 222 >gi|4481749|gb|AAD21216.2| BacR [Bacillus licheniformis] Length = 238 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 11/150 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R H+ VP++ ++ + G DD + KP E+LAR+ A+ RR Sbjct: 63 IEVCRRMRNHTNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRFL 122 Query: 121 V--SNNRAETGPIRVFS----DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V S +R++ + F D + V G+ L +E +L++ +N G+ KTQ Sbjct: 123 VLGSESRSDEQSLIQFKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 +F + D+ +E +N V HI +LRKK+ Sbjct: 183 LFRNAWS--DQYIEDDNTVMVHIRRLRKKI 210 >gi|218516896|ref|ZP_03513736.1| probable two-component sensor histidine kinase protein [Rhizobium etli 8C-3] Length = 629 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 14/162 (8%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ ++ S++P+I ++ SL + DSG DD + KP E+ AR+ A+ RR + Sbjct: 63 LKRLRQSGSKLPVIILTANASLDGRVAGLDSGADDYLAKPFEIAELEARIRAVVRRGQDR 122 Query: 123 NNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + T +FS G R V GE L RE +LE L+ G V+KT + A Sbjct: 123 ASSEITVGDLLFSGGTRQFFVAGEPLQLTPREYAVLEQLVMKLGTTVSKTALPKA----- 177 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + VE +I +LRKKL N + + R LGY D + Sbjct: 178 ------SSVEIYIHRLRKKLENS--SVQIATLRGLGYLSDMS 211 >gi|168187034|ref|ZP_02621669.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] gi|169295053|gb|EDS77186.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] Length = 228 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 73/146 (50%), Gaps = 6/146 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR S+ P+I ++ + + G DD + KP +E++AR+ A+ RR Sbjct: 65 IDVLKWIRKESETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYN 124 Query: 121 VSNNRAETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V N + + + + + + E+ +P +E +L YL +N K + Q+ Sbjct: 125 VENEDKDVLKFKSLTIDINSYIVVYKENEI-KMPPKEFELLYYLASNCNKVFTREQLLCE 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR 202 ++G +D + V+ HI +LR+KL+ Sbjct: 184 VWG-YDYPGDSRTVDVHIKRLREKLQ 208 >gi|167565338|ref|ZP_02358254.1| DNA-binding response regulator [Burkholderia oklahomensis EO147] gi|167572443|ref|ZP_02365317.1| DNA-binding response regulator [Burkholderia oklahomensis C6786] Length = 220 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 73/157 (46%), Gaps = 12/157 (7%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R +P+I I+ +L + D G DD + KP E+LAR+ A+ RR RA+ Sbjct: 68 RRDDALPVIVITARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRR---QAGRAQ 124 Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 T G +R+ E L +E +L LM G +++ Q +Y + E Sbjct: 125 TVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLYS-WGE 183 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E N V+ HI LRK KLG D + + R +GY I Sbjct: 184 EIESNAVQVHIHNLRK----KLGHDTILTVRGVGYRI 216 >gi|126454435|ref|YP_001066318.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|217421980|ref|ZP_03453484.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|226197446|ref|ZP_03793023.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|242314811|ref|ZP_04813827.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|254198192|ref|ZP_04904614.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|126228077|gb|ABN91617.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|169654933|gb|EDS87626.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|217395722|gb|EEC35740.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|225930825|gb|EEH26835.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|242138050|gb|EES24452.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] Length = 237 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 3/137 (2%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNN 124 + +S +P++ +++ + ++G DD V KP +E +ARV A+YRR + + Sbjct: 68 KNYSNIPVLILTNAILESEVVAALEAGADDYVIKPPRKQEFVARVKALYRRATETRTLSE 127 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E GP R+ + + E L +E I+E L N G+ V++ ++ ++G + Sbjct: 128 LIEIGPYRIQTSEKVVYFHREAITLSPKEYEIIELLARNIGQIVSRDKMVYQVWGRLPDE 187 Query: 185 VEENVVESHISKLRKKL 201 +++HI ++R+KL Sbjct: 188 AAFRTLDTHIYRIRRKL 204 >gi|229541697|ref|ZP_04430757.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229326117|gb|EEN91792.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 225 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAET 128 + P++ ++ SL+ + + G DD + KP E+ AR+ A RR + + + Sbjct: 71 ETPVLFVTAKDSLEDRVTGLEIGGDDYIVKPFQAAELKARIRASLRRSGNMTIDHTLRYR 130 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G I +F ++ +V G+ L + +LEYL+ N G + + QIF ++G F+ Sbjct: 131 G-IELFGKEKEIKVDGQPLKLTITQYELLEYLIQNSGNILTREQIFDRVWG-FESDTTIA 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +VE +I LRKKL + + R +GY Sbjct: 189 IVEVYIHHLRKKLEPFGYHKDIQNVRGIGY 218 >gi|160881553|ref|YP_001560521.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160430219|gb|ABX43782.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 233 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 7/146 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IRA S VP+I I+ + D G DD + KP E++AR+ AI RR+ Sbjct: 62 EVCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMTK 121 Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + S N + + + + G L ++E + L +N K + + Sbjct: 122 KENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +++G FD + V+SHI +LR KL Sbjct: 182 SLWG-FDYFGDSRTVDSHIKRLRAKL 206 >gi|119716293|ref|YP_923258.1| two component transcriptional regulator [Nocardioides sp. JS614] gi|119536954|gb|ABL81571.1| two component transcriptional regulator, winged helix family [Nocardioides sp. JS614] Length = 228 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 90/187 (48%), Gaps = 3/187 (1%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 E L S + DV+ ++ L G + V R+ +P++ ++ ++ + D+G Sbjct: 38 ERLLSDSSLDVALLDWMLPGL-DGVTVARRLRDLGVALPILMLTARGDVRDRVSGLDAGA 96 Query: 96 DDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154 DD + KP E+LAR+ A+YRR V + G + V R G L RE Sbjct: 97 DDYLPKPFDLDELLARLRALYRRGSLVGEAPVQLGDLVVDPVARRVTRGGVEIVLSAREF 156 Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214 IL L+++ G+ V++ I ++ + + NV++ H++ +R K+ G + + + R Sbjct: 157 DILHLLVSHAGRVVSRLMILDEVWD-GETDLRSNVIDVHLAAIRAKIDKPFGTETITTLR 215 Query: 215 FLGYSID 221 +GY +D Sbjct: 216 GVGYRVD 222 >gi|333003432|gb|EGK22976.1| transcriptional regulatory protein baeR [Shigella flexneri K-272] gi|333017262|gb|EGK36582.1| transcriptional regulatory protein baeR [Shigella flexneri K-227] Length = 240 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S VP++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167 I RR K + AE+ P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLNLTPAEFRLLKTLSHEPGKV 179 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|323463631|gb|ADX75784.1| heme response regulator HssR [Staphylococcus pseudintermedius ED99] Length = 225 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 4/161 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL ++ + P+I ++ +L F +G DD V KP E++ R+ A+ RR ++ Sbjct: 63 ELCETLKYDYEYPVIMLTARDALSDKERAFLAGTDDYVTKPFEVAELIFRIQAVLRRYQI 122 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T G + + + +V+ + LP +E +L L+A + + Q+ I+G+ Sbjct: 123 VTETLLTLGNLTIDQTQLEVKVETKGMILPHKEFELLSLLVAYPKQVFPREQLIEKIWGI 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 D +E V+ HI +LR +L+ KLG + +++ R +GY + Sbjct: 183 -DYEGDERTVDVHIKRLRARLK-KLGANVYIETVRGIGYKV 221 >gi|310756717|gb|ADP20499.1| AdeR [Acinetobacter baumannii] Length = 247 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122 IR +Q P+I ++ + G DD V KP + E++ARV A+ RR KV+ Sbjct: 78 IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQFANKVT 137 Query: 123 NNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N I + +D + E + L E +I+ +++ K + ++ + + Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D E V+SH+SKLRKKL + F + + R +GY +D Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238 >gi|310756711|gb|ADP20495.1| AdeR [Acinetobacter baumannii] Length = 247 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122 IR +Q P+I ++ + G DD V KP + E++ARV A+ RR KV+ Sbjct: 78 IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQFANKVT 137 Query: 123 NNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N I + +D + E + L E +I+ +++ K + ++ + + Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D E V+SH+SKLRKKL + F + + R +GY +D Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238 >gi|269976505|ref|ZP_06183490.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1] gi|269935306|gb|EEZ91855.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 98/227 (43%), Gaps = 10/227 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59 M ++D ++D + G G G + + R ++ ++ L G G + Sbjct: 1 MIYFVEDDRNIRDLVVYTLGSTGFEAFGCEDDKAFRAEMAKTRPELVLLDIMLPGTDGIQ 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L + R+ + +P+I ++ + + D G DD V KP E+++RV A+ RR Sbjct: 61 ILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLRRS 120 Query: 120 KVSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S + G I + V GE L +E ++LE LM G ++ Q+ Sbjct: 121 SRSAQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRDQL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +I+G + E V+ HI LRKKL + + + R +GY + Sbjct: 181 LDSIWG-YSFHGETRTVDVHIRTLRKKLGEAAKY--IKTVRGVGYKV 224 >gi|288940032|ref|YP_003442272.1| winged helix family two component transcriptional regulator [Allochromatium vinosum DSM 180] gi|288895404|gb|ADC61240.1| two component transcriptional regulator, winged helix family [Allochromatium vinosum DSM 180] Length = 224 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 10/166 (6%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L + R +RA ++ P++ +S + ++ +G DD + KP E+ ARV A+ RR Sbjct: 60 LAIVRTLRASGNRTPVLFLSALGDVDDRVEGLRAGGDDYLIKPFAFSELQARVEALLRRG 119 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R G + + R+ G+ L RE R+LE LM + G+ V +T + + Sbjct: 120 AAEAPETRLRVGDLEMDLLKREVTRAGQSIQLQPREFRLLECLMRHAGRVVTRTMLLEQV 179 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 + FD + NV++ HIS+LR K+ FDP + + R GY + Sbjct: 180 WDYHFDP--QTNVIDVHISRLRGKIDKD--FDPPLLQTVRGAGYRL 221 >gi|195978474|ref|YP_002123718.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975179|gb|ACG62705.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 247 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 10/142 (7%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAE- 127 S+ P++ +S + + G DD V KP RE+LARV AI RR ++S + E Sbjct: 80 SKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEAEISGDGEEH 139 Query: 128 ------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +R++ + + E+ PL +E +L YLM + + + ++ I+G + Sbjct: 140 REPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRERLLERIWG-Y 198 Query: 182 DEAVEENVVESHISKLRKKLRN 203 D E +V+ HI KLR+K+ + Sbjct: 199 DFGQETRLVDVHIGKLREKIED 220 >gi|162295958|gb|ABX83927.1| AdeR [Acinetobacter baumannii] Length = 247 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122 IR +Q P+I ++ + G DD V KP + E++ARV A+ RR KV+ Sbjct: 78 IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQFANKVT 137 Query: 123 NNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N I + +D + E + L E +I+ +++ K + ++ + + Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLSLTEYKIISFMIDQPHKVFTRGELMN--H 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D E V+SH+SKLRKKL + F + + R +GY +D Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238 >gi|160942672|ref|ZP_02089915.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii M21/2] gi|158446027|gb|EDP23030.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii M21/2] Length = 232 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/200 (23%), Positives = 94/200 (47%), Gaps = 21/200 (10%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+GY +DG LE FN++ + D+ ++ + LE+ R IR Sbjct: 23 LTKEGYQVTVANDGEEGLEKFNAV----------KPDMVLLDVMMPRMDG--LEVCRRIR 70 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 P++ ++ + + G DD + KP +E++AR+ A+ RR + ++ AE+ Sbjct: 71 KAGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQTTSAAAES 130 Query: 129 GP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +R+ + + V+G+V P +E +L L ++ + + Q+ ++G F Sbjct: 131 TEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLLDEVWG-F 189 Query: 182 DEAVEENVVESHISKLRKKL 201 + + ++ H+ +LR+KL Sbjct: 190 EYYGDSRTIDVHVKRLREKL 209 >gi|116690638|ref|YP_836261.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|206561168|ref|YP_002231933.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|116648727|gb|ABK09368.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|198037210|emb|CAR53131.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 220 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +R +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 IDVLRTLRGRGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 118 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+E+ G + + + G L RE +LE L+A G ++K+Q+ Sbjct: 119 --QAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 177 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 216 >gi|114776380|ref|ZP_01451425.1| DNA-binding response regulator [Mariprofundus ferrooxydans PV-1] gi|114553210|gb|EAU55608.1| DNA-binding response regulator [Mariprofundus ferrooxydans PV-1] Length = 230 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 11/160 (6%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 R + P++ ++ + ++ F +G DD + KP H E+L R+ A+ RR V+ Sbjct: 68 RKNIATPVLILTARGAWHEKVEGFRAGADDYLTKPFHFEELLVRLQALIRRASGVAGANI 127 Query: 127 ETGPIRVFSDGR-----DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G +++ + + D + L E R+L Y+M + + + T + +Y Sbjct: 128 VIGNLQLDEESQSAIWDDAQAGLRHIELTGIEFRLLRYMMLHPKRVFSATHLVEHVYDFN 187 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE E NV+E ++S+LRKKL ++ + ++R GY +D Sbjct: 188 DEK-ESNVIEVYVSRLRKKLAKEV----ICTRRGQGYYLD 222 >gi|332307619|ref|YP_004435470.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174948|gb|AEE24202.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 3/130 (2%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLP 150 SG DD + KP E+ AR+ ++ RR + N+R E + + + L Sbjct: 93 SGADDYLTKPFSFDELSARLVSLMRRGPATHANDRIEINDFVLNLQTKSLSYHQQDIELT 152 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 E +I+E + NR + V ++ + G +D +N +E+H+S RKK +N P+ Sbjct: 153 PNEYKIIECMFLNRDRVVTSERLSEYLSGNYDH-TSKNAIEAHLSSARKKAKNIGASLPI 211 Query: 211 DSKRFLGYSI 220 SKR GY I Sbjct: 212 KSKRGFGYKI 221 >gi|325297180|ref|YP_004257097.1| two component transcriptional regulator, winged helix family [Bacteroides salanitronis DSM 18170] gi|324316733|gb|ADY34624.1| two component transcriptional regulator, winged helix family [Bacteroides salanitronis DSM 18170] Length = 225 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 4/151 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G +L+ + + + V ++ D S++ + D G DD + KP H E+ AR+ + Sbjct: 57 GNGLDLLKELQALGKRTNVIILSAKD--SIEDKVVGLDLGADDYLPKPFHLAELHARLKS 114 Query: 115 IYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++RR + ++ + G I V+ D + G+ L R+E IL Y M+ G+ V K + Sbjct: 115 LFRRSQREGEHKMQVGNIEVYPDQFRVMINGKQVELNRKEYDILYYFMSRPGRLVNKNTL 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRN 203 +++G D+ + + + I LRK+L++ Sbjct: 175 AESVWGDHIDQVDNFDFIYAQIKNLRKRLKD 205 >gi|309774605|ref|ZP_07669630.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53] gi|308917636|gb|EFP63351.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/209 (25%), Positives = 95/209 (45%), Gaps = 15/209 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++G + F +S + E+++++ R D++ ++ + Sbjct: 6 LVLDDEKEIADLVALYLNNEGYEVHKFYDSRDALEYMKNN-RVDLALLDVMMPEISG--F 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +IIR P+I ++ + G DD + KP + E++ARV A RR K Sbjct: 63 EICKIIREKYMFPVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLRRYKK 122 Query: 122 SNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N E + F +D + EV L E IL YL N+G+ + ++F Sbjct: 123 YNPSQENVNVIDFKGLIIDNDSHRCTLYDEVLNLTPIEFSILWYLCKNKGRVITSEELFE 182 Query: 176 AIY--GLFDEAVEENVVESHISKLRKKLR 202 A++ FD N V HI +LR+K+ Sbjct: 183 AVWKEKYFD---SNNTVMVHIRRLREKMH 208 >gi|297537263|ref|YP_003673032.1| winged helix family two component transcriptional regulator [Methylotenera sp. 301] gi|297256610|gb|ADI28455.1| two component transcriptional regulator, winged helix family [Methylotenera sp. 301] Length = 221 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 6/154 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-E 127 A+ +P++ ++ ++ + ++G DD + KP E++AR+ A+ RR + Sbjct: 69 ANLALPVLVLTARDTVADRVIGLNAGADDYLIKPFDLDELIARLNALLRRSAGQVTLTLQ 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G I + G++ L RE + L+ + G+ ++ Q+ +YG + E VE Sbjct: 129 HGDIELTPSTHQVSKNGQIVELAAREFSLFHELLLHAGRVQSREQLEQHLYG-WGEEVES 187 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 N VE HI LRKKL + L + + R +GY ID Sbjct: 188 NSVEVHIHHLRKKLGSAL----IRTIRGVGYVID 217 >gi|296330321|ref|ZP_06872802.1| two-component response regulator (YvcQ) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676074|ref|YP_003867746.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152589|gb|EFG93457.1| two-component response regulator (YvcQ) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414318|gb|ADM39437.1| two-component response regulator (paired with YvcQ) [Bacillus subtilis subsp. spizizenii str. W23] Length = 237 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 9/167 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118 R IR S P+I IS + ++G DD + KP H ++A++ ++ RR Sbjct: 65 RQIRTISNAPIIFISARTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYS 124 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 L + E G + V+ D + E ++E ++L + K V++ ++ A Sbjct: 125 PSLSQESRIVELGGLTVYPDQNEAEWNSTRILFSQKEFQLLSIFVREHKKIVSRDELLEA 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ D V++N + ++++LRKKL N D + + R GY N Sbjct: 185 LWDDVD-FVDDNTLTVNVNRLRKKLENAGLKDCISTIRGQGYQFQVN 230 >gi|255318782|ref|ZP_05360008.1| DNA-binding response regulator [Acinetobacter radioresistens SK82] gi|262378954|ref|ZP_06072111.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255304038|gb|EET83229.1| DNA-binding response regulator [Acinetobacter radioresistens SK82] gi|262300239|gb|EEY88151.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 225 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 81/166 (48%), Gaps = 15/166 (9%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I + +P++ IS L +D + G DD + KP E+LAR+ A+ RR ++ Sbjct: 64 LKQIRQQKPALPVLIISARDQLHNRVDGLNQGADDYLVKPYEFDELLARIQALLRRSTIT 123 Query: 123 NNRAETGPIRVFSDG---RDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIF 174 + + ET +++ G D E +F L +RE IL LM+ K +++ + Sbjct: 124 SIQTET--VQILQHGDLILDLEQHSALFKNEHIDLSKREWAILIPLMSYPYKIFSRSSLE 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y + D + N +E +I LR KLG D + + R LGY + Sbjct: 182 DKLYDI-DSEINSNTIEVYI----HHLRTKLGKDFIRTIRGLGYRL 222 >gi|322421457|ref|YP_004200680.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320127844|gb|ADW15404.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 226 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 3/162 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LEL R+IR S VP+I ++ + + G DD + KP RE+ ARV A+ RR Sbjct: 62 LELCRLIRQTSSVPIIFLTARTDEIDRIVGLELGADDYITKPFSPREVSARVKAVLRRTS 121 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N + G V R G + L R E +L+ + G ++ Q+ ++ Sbjct: 122 NPGNAMSSPGTFSVNESKRQISYFGRMLALSRYEYEMLKTFIRRPGHVFSREQLMQLVWE 181 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 E + +++HI +R KL+ + +P+ + R GY++ Sbjct: 182 -NPECSLDRTIDAHIKNIRAKLKKIQPDREPIVTYRGTGYAL 222 >gi|167903136|ref|ZP_02490341.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] Length = 260 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 6/154 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 VP+I +S+ ++ F +G DD V KP E LAR+AA+ RR + E G I Sbjct: 77 VPVIVLSNAMQEMQIVEAFSAGADDYVLKPAREAEFLARIAAMMRRKGHAVSGTIEIGGI 136 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVV 190 + + + GE + E ILE + + G V + + + I+G DEAV + + Sbjct: 137 AIDLGWKAVRIDGEPVRMAPIEYEILEMMARHLGSVVQREVLVNRIWGRSIDEAVSRS-L 195 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRF--LGYSIDW 222 ++H+ ++R KL+ G V + LGY ++W Sbjct: 196 DTHVYRIRHKLKVH-GVSNVSLRSVYNLGYRLEW 228 >gi|160940959|ref|ZP_02088298.1| hypothetical protein CLOBOL_05850 [Clostridium bolteae ATCC BAA-613] gi|158436049|gb|EDP13816.1| hypothetical protein CLOBOL_05850 [Clostridium bolteae ATCC BAA-613] Length = 235 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 60/234 (25%), Positives = 99/234 (42%), Gaps = 37/234 (15%) Query: 14 GYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEKVL----------- 61 GY L G+D + +N + E+ Q +A + E+ ++ +L Sbjct: 3 GYHILLGEDEPDILEYNREQLEQRGYQVTAVSTLGQAESCVLRDNPDLLVLDVMMPDGSG 62 Query: 62 -ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R Q P++ ++ + +G DD + KP E+ AR+ A RRL+ Sbjct: 63 VDLCRRLREQFQGPILFLTSLGESSQIVQGLRAGGDDYITKPYDIEELAARIEAHLRRLE 122 Query: 121 VSNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R + DGRD L +E R+L LM NRG+ + Sbjct: 123 RRGGEDIHQGGSRLYLNVKSQRAYLDGRD-------MLLKPKEYRLLAALMRNRGRYMES 175 Query: 171 TQIFSAIYGLFDEAVEENV--VESHISKLRKKLRNKLG--FDPVDSKRFLGYSI 220 +++ I+ D A ++ V HIS LRKKL++ G ++ KR LGY + Sbjct: 176 GELYREIW---DMAPNRDIRTVWVHISNLRKKLQDADGELIADIECKRALGYKL 226 >gi|78187074|ref|YP_375117.1| two component transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166976|gb|ABB24074.1| two component transcriptional regulator, winged helix family [Chlorobium luteolum DSM 273] Length = 232 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 12/166 (7%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R +R A S VP+I ++ +L + +G DD V KP E+LAR+ R Sbjct: 60 IEVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARI-----RA 114 Query: 120 KVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ N TGP+ + DPE L +E +LEYL+ N + +++I Sbjct: 115 RLRQNTPTTGPLTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRII 174 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + +A + +V++ +++ LR+KL + + R +GY I Sbjct: 175 EHVWDIHFDA-DTSVIDVYVNFLRRKLEAAGCTGLIKTVRGVGYVI 219 >gi|163938574|ref|YP_001643458.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163860771|gb|ABY41830.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 225 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKRIRSFSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQHAQIQYHGILWDEAKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRNKLR-KVNF-PIDHHLKTVYGVGYRW 220 >gi|329922845|ref|ZP_08278361.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328941618|gb|EGG37903.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 239 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 7/147 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL IR H+ P+I IS + L G DD + KP + E++AR+ AI RR + Sbjct: 64 FELCTEIRKHTNAPIIFISARSTDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQR 123 Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N + G + + V+G+ +E +L + + Q++ Sbjct: 124 IMENALQQNTAYDYGHLSYHPESATLIVKGQPVDCTAKELELLHFFFKHPNHIFTTVQLY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++G D EE V HISKLRKK+ Sbjct: 184 ELVWG-NDVFGEEKTVTIHISKLRKKI 209 >gi|328951186|ref|YP_004368521.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328451510|gb|AEB12411.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 224 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 11/165 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S VP++ ++ ++ ++ D+G DD + KP E+LARV A RR+ Sbjct: 63 LEVARRIRKTSNVPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRV- 121 Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 A TG IRV +GR+ G L +E +LE L + GK ++ +I Sbjct: 122 ---TPAITGEIRVADLIINLEGREVFRGGRRIELSNKEFELLELLARSPGKVFSRFEIEE 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + NVV+ +I LRKKL + + R +GY + Sbjct: 179 KVWPGYQGG--SNVVDVYIGYLRKKLEAGGERRLIHTVRGVGYVL 221 >gi|229182235|ref|ZP_04309517.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228601250|gb|EEK58789.1| DNA-binding response regulator [Bacillus cereus 172560W] Length = 223 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 10/162 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+ ++ S L + G DD + KP + +LARV I RR + Sbjct: 63 ICREIRKTSDVPIFMVTSRDSDVDELISMNLGADDFITKPYNTEILLARVTNILRR---T 119 Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +T I ++ D Q + L + E +IL L+ NRG V + + Sbjct: 120 SGDFKTNHILIYRDFTLNLSNATVTYQDKSVELTKNEVKILSCLINNRGNIVKRDSLIET 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ D V+++ + +I++LRKKL +P+ ++R LGY Sbjct: 180 LWK-SDYFVDDSTLTVNINRLRKKLEEIGIENPIATRRSLGY 220 >gi|239827301|ref|YP_002949925.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239807594|gb|ACS24659.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 225 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 4/144 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123 IR S VP++ ++ + G DD + KP E++AR+ AI RR K N Sbjct: 69 IREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYHNKQKN 128 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 GP+ + GR V G+ L +E +L +L + G+ ++ + + ++G +D Sbjct: 129 EDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVWG-YDY 187 Query: 184 AVEENVVESHISKLRKKLRNKLGF 207 V++HI LR KL+ F Sbjct: 188 TGNARTVDTHIKTLRMKLKQASDF 211 >gi|53719681|ref|YP_108667.1| putative two component system response regulator [Burkholderia pseudomallei K96243] gi|53725473|ref|YP_102580.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|76810696|ref|YP_333145.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|121600852|ref|YP_992686.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|126441806|ref|YP_001058598.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126448655|ref|YP_001080202.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|167720025|ref|ZP_02403261.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] gi|167816248|ref|ZP_02447928.1| DNA-binding response regulator [Burkholderia pseudomallei 91] gi|254197798|ref|ZP_04904220.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|254260652|ref|ZP_04951706.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] gi|52210095|emb|CAH36069.1| putative two component system, response regulator [Burkholderia pseudomallei K96243] gi|52428896|gb|AAU49489.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|76580149|gb|ABA49624.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|121229662|gb|ABM52180.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|126221299|gb|ABN84805.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126241525|gb|ABO04618.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|169654539|gb|EDS87232.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|254219341|gb|EET08725.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 260 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 4/153 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 VP+I +S+ ++ F +G DD V KP E LAR+AA+ RR + E G I Sbjct: 77 VPVIVLSNAMQEMQIVEAFSAGADDYVLKPAREAEFLARIAAMMRRKGHAVSGTIEIGGI 136 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVV 190 + + + GE + E ILE + + G V + + + I+G DEAV + + Sbjct: 137 AIDLGWKAVRIDGEPVRMAPIEYEILEMMARHLGSVVQREVLVNRIWGRSIDEAVSRS-L 195 Query: 191 ESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++H+ ++R KL+ + + + S LGY ++W Sbjct: 196 DTHVYRIRHKLKVHGVSNVSLRSVYNLGYRLEW 228 >gi|154247445|ref|YP_001418403.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161530|gb|ABS68746.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 238 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 20/163 (12%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------- 118 R H+ P++ +S + + +G DD + KP E+LARV A+ RR Sbjct: 81 RGHT-TPVLILSALGQVDDRVQGLRAGGDDYLPKPYAFTELLARVEALSRRGVSQGAETV 139 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 KVS+ + RV G++ PL RE R+LEYL+ + G+ V +T + ++ Sbjct: 140 YKVSDLELDRLAHRVTRSGKE-------IPLQPREFRLLEYLLRHAGQVVTRTMLLENVW 192 Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + NV++ H+S+LR K+ + + R GY + Sbjct: 193 DYHFDP--QTNVIDVHVSRLRSKIDKGFDVPLIHTVRGAGYMV 233 >gi|329947016|ref|ZP_08294428.1| transcriptional activator protein CopR [Actinomyces sp. oral taxon 170 str. F0386] gi|328526827|gb|EGF53840.1| transcriptional activator protein CopR [Actinomyces sp. oral taxon 170 str. F0386] Length = 219 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 19/155 (12%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133 P+I ++ S+ + + G DD + KP E+LAR+ R+++ A +R+ Sbjct: 75 PVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARI-----RVRLRPEAAGADQMRL 129 Query: 134 FSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 R ++G L RE + E M + G+ +++ Q+ SA++GL FD Sbjct: 130 THRDMVLDLRTRTLTLEGRTVELSAREFALAEAFMRHPGQVLSREQLLSAVWGLDFDPG- 188 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVVE ++S LRNKLG D V++ R +GY + Sbjct: 189 -SNVVEVYVS----YLRNKLGRDRVETVRGMGYRL 218 >gi|304438797|ref|ZP_07398724.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372720|gb|EFM26299.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 3/158 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVS 122 +IIR +S+VP++ IS + D G DD + KP + ++ A+ RR + Sbjct: 69 KIIRKNSKVPILFISAADENLNLIMAMDLGADDYLTKPFELELLQIKIRALLRRAYEYIE 128 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 IR+ D + + L + E +ILE L+ GK V + +I I+ D Sbjct: 129 TRNIFYKDIRLDCDKMIISRENKEIELTKNEFKILEILLEKPGKVVNRDEIIDKIWQT-D 187 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++ +LRKKL + F+ + +K+ +GY + Sbjct: 188 SYIDDNTLTVNVMRLRKKLEDINIFELIKTKKGVGYYV 225 >gi|228471212|ref|ZP_04056025.1| transcriptional regulatory protein ResD [Porphyromonas uenonis 60-3] gi|228307027|gb|EEK16109.1| transcriptional regulatory protein ResD [Porphyromonas uenonis 60-3] Length = 233 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 8/154 (5%) Query: 57 GEKVLELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G +L +IR ++ P+I ++ + L F+ G DD + KP +E+ AR+ A Sbjct: 60 GMNGFKLAELIRRDKKLTTPIIFLTAKGTENDLLTGFNIGADDYMAKPFSIKELQARIQA 119 Query: 115 IYRRLKVSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 I R S ++ E G + + D + V GE+ L ++E IL L + GK + Sbjct: 120 ILMRFLQSGPDFGESQIEIGTLLIDLDAKQVFVHGELIELTKKELEILVLLARDPGKVFS 179 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + +I ++ D V E ++ HI+++RKKLR+ Sbjct: 180 REEILDRVWR-EDVFVLERTIDVHITRIRKKLRS 212 >gi|224584977|ref|YP_002638776.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469505|gb|ACN47335.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 219 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D L+ DG A G S++ F + SA D ++ L G G + Sbjct: 3 ILLVEDDTLIGDGIKAGLSKMGFSIDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 LREWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ G + + + GE L +E +LE L+ N+G+ + + I +Y Sbjct: 121 GQASSELHHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D+ V N VE H+ LR+ KLG + + + +GY++ Sbjct: 181 -WDDDVSSNAVEVHVHHLRR----KLGSEFIRTVHGIGYTL 216 >gi|210610549|ref|ZP_03288475.1| hypothetical protein CLONEX_00665 [Clostridium nexile DSM 1787] gi|210152408|gb|EEA83414.1| hypothetical protein CLONEX_00665 [Clostridium nexile DSM 1787] Length = 225 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 12/173 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G L + + IR H P++ ++ + F +G DD + KP E+ AR+AA Sbjct: 58 GMDGLTVCQQIREHIACPILFLTARIESSDKIIGFQAGADDYIVKPFDLDELGARIAAHL 117 Query: 117 RRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR R +R F + R + PL +RE I+E L N G+ + Sbjct: 118 RR---EQRRQNNSAVRFFGELILDYSARTVTINNLNIPLSKREFEIVELLSLNAGQVFDR 174 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +I+ ++GL + + ++E HI K+R K + +++ GY WN Sbjct: 175 ERIYELVWGLDGDGNSDTIME-HIRKIRAKFAAHTLHNYIETVWGCGYR--WN 224 >gi|157414226|ref|YP_001485092.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|254526749|ref|ZP_05138801.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] gi|157388801|gb|ABV51506.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|221538173|gb|EEE40626.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] Length = 248 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 13/150 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IRA S VP+I ++ ++ + D G DD ++KP +E+ AR+A I RR+ + Sbjct: 67 RRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPTVT 126 Query: 125 RAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ET G + V ++ R GE L E +LE L GK V + + Sbjct: 127 VTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVPRAE 186 Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201 I ++G A + VV+ ++++LR KL Sbjct: 187 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 216 >gi|325475644|gb|EGC78820.1| sensor histidine kinase/response regulator [Treponema denticola F0402] Length = 228 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 10/163 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S VP+I ++ + DSG DD + KP E+LAR+ A+ RR + Sbjct: 61 LEVLRRIRKTSSVPVIMLTARGETFDKVSGLDSGADDYLAKPFEIEELLARMRAVIRRNE 120 Query: 121 VSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 V T +++ + DP V + L + E +L+ + N+ +++ +I Sbjct: 121 VRG----TSVLKLRAIELDPAAMKVMVNKKHTILSKTEYLLLKTFIENKNTVLSRDRIIG 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G + ++EN V+ ++ LR K+ K G + + + R +GY Sbjct: 177 EVWG-ENYYIDENSVDVYVRHLRSKIDEKTGEEYISTVRGVGY 218 >gi|323703748|ref|ZP_08115387.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323531272|gb|EGB21172.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 230 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 5/162 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R+++ V +I ++ + + + G DD + KP E+LAR+ A R + Sbjct: 70 EVCRMLKKMDNVAVIMLTAKDEVDDRVKGLNLGADDYMIKPFSFEELLARIYARIRN-QF 128 Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N E GP + ++ V L E +L++L+ N G ++K I ++G Sbjct: 129 PNLFGEVVIGPFHIDDRRKEIRFADRVLELSPTEYELLKFLILNHGLVLSKAMILDKVWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D EEN+VE +I LR KL +K + + R GY +D Sbjct: 189 -YDFGGEENIVEVYIRSLRDKLNDK-NHQLIRTLRGSGYRVD 228 >gi|319399988|gb|EFV88230.1| response regulator [Staphylococcus epidermidis FRI909] gi|329736431|gb|EGG72700.1| response regulator receiver domain protein [Staphylococcus epidermidis VCU045] Length = 221 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 5/151 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAE 127 S +P+I ++ +L T L F G D + KP + E++ R+ + + ++ N + Sbjct: 69 SNIPIIFLTAKDNLDTRLKCFSLGAKDYLPKPFYMEELIIRIKNVLNQSHSQSLTPNIKK 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 T + ++ D +V + ++E I++ L N +K QI+ +I ++ Sbjct: 129 TKELIIYYDTYRIDVNNMTIDITKKEFEIIKLLSLNPQYYFSKEQIYDSIN--LNKTGNT 186 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VV HI K+RKKL F+ +D+K +GY Sbjct: 187 QVVAEHIRKIRKKLSCYSRFEYIDTKWGVGY 217 >gi|304440331|ref|ZP_07400220.1| response regulator VanR [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371083|gb|EFM24700.1| response regulator VanR [Peptoniphilus duerdenii ATCC BAA-1640] Length = 227 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 75/152 (49%), Gaps = 4/152 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P+I +S +T + G DD + KP ++LARV A RR + + ++ Sbjct: 72 IPIIVLSAKIDKETRIGVLKDGADDFITKPFDFDDVLARVEANIRRYRDFTKEIKKLEVK 131 Query: 133 VFSDGRDPE---VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + E + E L E +IL+ + N K K I+ A++ + A +E++ Sbjct: 132 DLKYNYEEECFYLYDEPLKLTMVESKILKLFLENPKKIFTKKNIYEAVWEDY-FAADEDI 190 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +HIS +R+K++NK + +++ +GY ++ Sbjct: 191 INAHISNIRRKIKNKTKEEYIETLWGIGYRLN 222 >gi|291544863|emb|CBL17972.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. 18P13] Length = 200 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 69/153 (45%), Gaps = 21/153 (13%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR P++ ++ + + G DD + KP RE++AR+ RR K + Sbjct: 65 IRQKENCPVVFLTARDDEADIVHGLELGADDYITKPFRLRELIARIRVQIRRSKGNTPLP 124 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 +T L ER++++YL N G+ V + QI + ++ E V+ Sbjct: 125 DT--------------------LTATERKLVQYLQINSGRVVTREQILNCLWDQHGEYVD 164 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +N + HI +LR+KL + G + + R +GY Sbjct: 165 DNTLSVHIRRLREKL-DADGVQHIRTVRGIGYQ 196 >gi|237740075|ref|ZP_04570556.1| two-component response regulator [Fusobacterium sp. 2_1_31] gi|229422092|gb|EEO37139.1| two-component response regulator [Fusobacterium sp. 2_1_31] Length = 236 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 5/159 (3%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 DV ++ L K K EL + R + P+I I+ S+ ++ D G +D + KP Sbjct: 59 DVVLLDLMLPKKSGK--ELCQEFRKLNNTPIIVITAKDSILDKVELLDLGANDYICKPFA 116 Query: 105 HREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LAR+ R + V I++ + ++ E L + E ILEY M Sbjct: 117 MEELLARIRVATRNKENFVDKQFYLEKDIKLDLSAKRVYLREEEINLTKTEFLILEYFMK 176 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 N+G ++ +I ++G +D EE +V+ +I+ LRKK+ Sbjct: 177 NKGLSCSREKIIIDVWG-YDFDGEEKIVDVYINSLRKKI 214 >gi|229124382|ref|ZP_04253570.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228659034|gb|EEL14686.1| Two-component response regulator [Bacillus cereus 95/8201] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 8/152 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 64 VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123 Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I V R V L E IL Y M N+G + + Q+ S Sbjct: 124 KQLLENEEDILSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 I+G ++ A ++ V SHI LR KL K + Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|239817224|ref|YP_002946134.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239803801|gb|ACS20868.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 226 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 12/149 (8%) Query: 63 LPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 LPRI +R+HS P+I ++ L D G DD V KP RE++ARV Sbjct: 55 LPRIGGLRVLEQVRSHSDHPIIVLTARTREADRLRGLDLGADDYVCKPFSPREVVARVNT 114 Query: 115 IYRRLKVSNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR A P F ++G + L RE +L+ L G+ +++ + Sbjct: 115 VLRRHAQRQRIAMASPSVAFGGSAHSVRIEGRLLALTGRELNLLQALSREPGRVFSRSAL 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKL 201 A + D V E V+ HI LR+KL Sbjct: 175 LEAAFADALD--VNERAVDGHIKNLRRKL 201 >gi|205354093|ref|YP_002227894.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273874|emb|CAR38875.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629210|gb|EGE35553.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 219 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +L++D L+ DG A G S++ F + SA D ++ L G G + Sbjct: 3 ILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 LREWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ G + + + GE L +E +LE L+ N+G+ + + I +Y Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D+ V N VE H+ LR+ KLG + + + +GY++ Sbjct: 181 -WDDDVSSNAVEVHVHHLRR----KLGSEFIRTMHGIGYTL 216 >gi|167950309|ref|ZP_02537383.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 170 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 4/132 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRA--ETG 129 +P++ ++ S Q ++ + G DD ++KPI LARV A+ RR ++S R E G Sbjct: 13 IPVLFLTHRDSEQDIVEALELGADDFLSKPISQPIALARVGALARRNARISGRRGVLELG 72 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 R+ + + QGE L +E ++ L N G+ +++ + ++G+ + Sbjct: 73 HFRLERESKTLLYQGEDRGLTEKEFQLAWILFCNVGRLLSRDHLLETVWGV-GPGLMTRT 131 Query: 190 VESHISKLRKKL 201 V++H+S+LR+KL Sbjct: 132 VDTHMSRLRRKL 143 >gi|170722192|ref|YP_001749880.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169760195|gb|ACA73511.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 220 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 26/219 (11%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L ++GY + DG+S G ++L+ E + D+ ++ L G +EL R +R Sbjct: 19 GLRQEGYTLDWLRDGLS--GLHALQHEMF-------DLVILDLGLPRLGG--IELLRRLR 67 Query: 69 AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 A +P++ ++ + + + D+G DD + KP E+ AR+ A+ RR S RA+ Sbjct: 68 AGGDSLPVLILTARDATEDRITGLDAGADDYLVKPFDLNELKARLRALLRR---SAGRAK 124 Query: 128 TGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 I DP Q G L +E R+L L+A GK + ++ +YG +D Sbjct: 125 V-LIEHAGVSLDPATQQVHYNGVPVVLTPKEYRLLHELLAQPGKVFTRERLTQLLYG-WD 182 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E N +E +I LRKKL N L + + R +GY ++ Sbjct: 183 EEPESNTLEVNIYHLRKKLFNGL----IRTVRGIGYLVE 217 >gi|157962629|ref|YP_001502663.1| two component transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157847629|gb|ABV88128.1| two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 225 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 3/136 (2%) Query: 67 IRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +RA+ + P++ ++ + S+ L+ F SG DD + KP +RE++AR+ A+ R R Sbjct: 67 LRANGADTPILFLTAFSSIDNKLEGFASGGDDYLAKPFDNRELIARITALSGRKSSHVKR 126 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + + + + + QG+ L +LE LM + V++ + + ++G DE Sbjct: 127 LDIAGLIMNCEQQQVSYQGQTIELTPACYTLLEMLMRASPEVVSRQSLENKLWG--DEPP 184 Query: 186 EENVVESHISKLRKKL 201 NV+++HI LR+ L Sbjct: 185 SSNVLKAHIYYLRRAL 200 >gi|91775660|ref|YP_545416.1| two component transcriptional regulator [Methylobacillus flagellatus KT] gi|91709647|gb|ABE49575.1| two component transcriptional regulator, winged helix family [Methylobacillus flagellatus KT] Length = 223 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 91/202 (45%), Gaps = 5/202 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A++ +G G +++ + + + D+ ++ L G Sbjct: 3 ILVVEDDAILAEGTCESLSKAGYAVDLAETGTKANAMMEAGHYDMLLLDIGL--PGMDGF 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R H+ +P++ IS + + D G DD + KP E+ AR A+ RR Sbjct: 61 EVLRRLRKHNNSIPVLIISARDDVDFRIYGLDLGADDFMLKPFVLAELHARTRALLRRHT 120 Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +S N G + V + V GE L RE +L YL+ N GK V K I + Sbjct: 121 LSERNTLACGKLMVDLGAQRASVNGEPIELSIREWDVLVYLLRNLGKVVRKEAIIETLCD 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 + + N VE +IS+LR KL Sbjct: 181 -WKTDISLNAVEVYISRLRSKL 201 >gi|82502198|gb|ABB80126.1| SubR [Bacillus subtilis] Length = 238 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 11/150 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R H+ VP++ ++ + G DD + KP E+LAR+ A+ RR Sbjct: 63 IEVCRRMRNHTNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRFL 122 Query: 121 V--SNNRAETGPIRVFS----DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V S +R++ + F D + V G+ L +E +L++ +N G+ KTQ Sbjct: 123 VLGSESRSDEQSLIQFKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 +F + D+ +E +N V HI +LRKK+ Sbjct: 183 LFRNAWS--DQYIEDDNTVMVHIRRLRKKI 210 >gi|33862175|ref|NP_893736.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634393|emb|CAE20078.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 248 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 13/150 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IRA S VP+I ++ ++ + D G DD ++KP +E+ AR+A I RR+ S Sbjct: 67 RRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPSIT 126 Query: 125 RAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ET G + V ++ R GE L E +LE L GK V + + Sbjct: 127 VTETKEVPSGKGVMKFGNLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVPRAE 186 Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201 I ++G A + VV+ ++++LR KL Sbjct: 187 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 216 >gi|326562467|gb|EGE12785.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis 46P47B1] gi|326564282|gb|EGE14512.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis 103P14B1] gi|326567216|gb|EGE17336.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis 12P80B1] gi|326568279|gb|EGE18361.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis BC8] gi|326569979|gb|EGE20026.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis BC1] gi|326570061|gb|EGE20107.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis BC7] gi|326572915|gb|EGE22900.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis CO72] gi|326573839|gb|EGE23792.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis O35E] gi|326574741|gb|EGE24677.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis 101P30B1] Length = 230 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 82/172 (47%), Gaps = 6/172 (3%) Query: 52 FLIGKGEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108 +++ GE ++ R ++ A + +P+I ++ + D+GVDD + KP RE+ Sbjct: 54 WMMPHGESGIDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTREL 113 Query: 109 LARVAAIYRRLKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 ++RV A+ RR + + + G + + + + G + E R+L + + + + Sbjct: 114 ISRVKAVLRRTGIDMGKELMQAGNLSINTASQRVMAGGTEITMSITEYRLLCFFVTHSER 173 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + QI A++G + ++E ++ HI +LRK L + + R GY Sbjct: 174 AYTRAQILDAVWG-GNVYIDERTIDVHIRRLRKLLAPYGADTLIQTVRGTGY 224 >gi|306843562|ref|ZP_07476163.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. BO1] gi|306276253|gb|EFM57953.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. BO1] Length = 228 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 20/171 (11%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + G DD V KP E+LARV A+ R Sbjct: 64 IELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 123 Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R LKV + + RV+ ++ EV L E R+LEY M + G+ Sbjct: 124 RANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSPGRVF 176 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +++Q+ ++G D V++ V+ H+ +LRK + DP+ + R GYS Sbjct: 177 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKAINVGRAVDPIRTVRGAGYS 226 >gi|308069059|ref|YP_003870664.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Paenibacillus polymyxa E681] gi|305858338|gb|ADM70126.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Paenibacillus polymyxa E681] Length = 228 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 25/151 (16%) Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +IR H+ VP+I IS ++ + G DD + KP +E+ AR+ A++RR++++ Sbjct: 66 LIRKHTDVPIIVISTENNISERIRTLTLGADDYICKPFSMQELKARIEALFRRIEIT--- 122 Query: 126 AETGPIRVFSDGRDPEVQ-GEVFPLPRR--------------ERRILEYLMANRGKRVAK 170 R+ GR PE + G L RR E +++ NRG ++ Sbjct: 123 ------RLQGRGRAPEPETGITLDLARRMITVNGQNVETTYSEFELMKLFYLNRGIVFSR 176 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + A+ G D + E V+ HI+ LR+K+ Sbjct: 177 YALIQALRGT-DSFINERAVDVHINHLRRKI 206 >gi|319763684|ref|YP_004127621.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330824053|ref|YP_004387356.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|317118245|gb|ADV00734.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329309425|gb|AEB83840.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 236 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 99/211 (46%), Gaps = 31/211 (14%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPR 65 D +L GY L + G L+G L +S D+ ++ L + G++VLE Sbjct: 26 DISLRSQGYATLLAETG--LQGLALL-------ASQGADIVVLDLGLPDRDGKEVLE--- 73 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +R S+VP+I ++ + + D+G +D V KP E++AR+ A R +S Sbjct: 74 ELRQWSRVPVIVLTVRSGEEEKVALLDAGANDYVTKPFGIGELMARIRAFLRTTALSG-- 131 Query: 126 AETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E GP V+ DG R ++G+ L R+E +L L G+ V +TQ+ + Sbjct: 132 -EEGP--VYDDGTLCIDLARRKVHLRGQAVALTRKEFALLALLARQPGRLVTQTQLLREM 188 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 +G +E+ ++ L KLR+KLG D Sbjct: 189 WG---PTHQEDA--HYLRVLVGKLRHKLGDD 214 >gi|297587723|ref|ZP_06946367.1| response regulator [Finegoldia magna ATCC 53516] gi|297574412|gb|EFH93132.1| response regulator [Finegoldia magna ATCC 53516] Length = 219 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 5/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA P++ ++ + ++ G DD + KP E+LAR+ A RR K + + Sbjct: 66 IRAKVDCPILFLTAKTMEEDIVEGLLIGGDDYITKPFGAAELLARIEAHLRREKRERHTS 125 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 G IR + V + L + E +I E L +G+ ++ QI+ I+G FD Sbjct: 126 LNLGEIRFDLSSNEVFVGDKKVHLTKSEYQISELLAKRKGQVFSREQIYELIFG-FDGIG 184 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + + + HI +R K + K G +P+++ +GY WN Sbjct: 185 DASAISEHIKNIRSKFQ-KYGKNPIETVWGIGYK--WN 219 >gi|206577736|ref|YP_002236556.1| transcriptional regulatory protein QseB [Klebsiella pneumoniae 342] gi|288933539|ref|YP_003437598.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|290511402|ref|ZP_06550771.1| DNA-binding transcriptional regulator QseB [Klebsiella sp. 1_1_55] gi|206566794|gb|ACI08570.1| transcriptional regulatory protein QseB [Klebsiella pneumoniae 342] gi|288888268|gb|ADC56586.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289776395|gb|EFD84394.1| DNA-binding transcriptional regulator QseB [Klebsiella sp. 1_1_55] Length = 219 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 106/222 (47%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 +L++D L+ DG A G S++ F + LE + L S A D + ++ L G G Sbjct: 3 ILLVEDDKLIGDGIKAGLSKMGFSIDWFTAGLEGKNALYS-APYDAAILDLTLPGIDGLD 61 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L R H V ++ D +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 62 ILREWRDKGRHEPVLILTARD--ALSQRVEGLRLGADDYLCKPFALIEVAARLEALIRRA 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S++ G + + + + GE L +E +LE L+ N G+ + + I +Y Sbjct: 120 HGQSSSELRHGKVSLDPNRLTASLDGESLVLKPKEFALLELLLRNAGRVLPRKLIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D+ V N VE H+ LR+KL + GF + + +GY++ Sbjct: 180 -TWDDEVSSNAVEVHVHHLRRKLGS--GF--IRTVHGIGYTL 216 >gi|171322290|ref|ZP_02911124.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171092384|gb|EDT37742.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 224 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 86/186 (46%), Gaps = 10/186 (5%) Query: 41 SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 SA D ++ L G G +L R + + P++ +S + + +G DD + Sbjct: 42 SASYDAITLDRMLPGADGLAILTAMRTVGIDT--PVLMLSALGDVDERIRGLRAGGDDYL 99 Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERR 155 KP E+ AR+ + RR + S +T G + + R + PL E R Sbjct: 100 TKPFDSGELSARIEVLLRRRQASGVPQQTLLTVGALELDLISRCARRGVDEIPLLPTEFR 159 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214 +LE++M N G+ + +T +F A++G FD N+++ H+ +LRKK+ + + R Sbjct: 160 VLEFMMRNAGQTITRTMLFEAVWGYHFDPGT--NLIDVHMGRLRKKIDPPGAVPMIQTVR 217 Query: 215 FLGYSI 220 GY + Sbjct: 218 GSGYML 223 >gi|134282698|ref|ZP_01769401.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|167739035|ref|ZP_02411809.1| DNA-binding response regulator [Burkholderia pseudomallei 14] gi|167894733|ref|ZP_02482135.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] gi|167911371|ref|ZP_02498462.1| DNA-binding response regulator [Burkholderia pseudomallei 112] gi|167919392|ref|ZP_02506483.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] gi|217423588|ref|ZP_03455089.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|226196264|ref|ZP_03791847.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|134245784|gb|EBA45875.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|217393446|gb|EEC33467.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|225931662|gb|EEH27666.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] Length = 260 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 4/153 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 VP+I +S+ ++ F +G DD V KP E LAR+AA+ RR + E G I Sbjct: 77 VPVIVLSNAMQEMQIVEAFSAGADDYVLKPAREAEFLARIAAMMRRKGHAVSGTIEIGGI 136 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVV 190 + + + GE + E ILE + + G V + + + I+G DEAV + + Sbjct: 137 AIDLGWKAVRIDGEPVRMAPIEYEILEMMARHLGSVVQREVLVNRIWGRSIDEAVSRS-L 195 Query: 191 ESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++H+ ++R KL+ + + + S LGY ++W Sbjct: 196 DTHVYRIRHKLKVHGVSNVSLRSVYNLGYRLEW 228 >gi|15605840|ref|NP_213217.1| transcriptional regulator (PhoB-like) [Aquifex aeolicus VF5] gi|2982999|gb|AAC06611.1| transcriptional regulator (PhoB-like) [Aquifex aeolicus VF5] Length = 228 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 19/160 (11%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA--- 126 ++P+I I+ + L F+ G DD + KP +E++ARV A+ +R KVS ++ Sbjct: 78 KEIPVIFITAKGEEEDKLKGFELGADDYITKPFSMKELIARVRAVLKRYKKVSESKVLKY 137 Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +T ++F DGR EV+ P E +IL+ LM N G+ V+++ + ++ + Sbjct: 138 EGVELDTERQKLFVDGR------EVYLTP-AEFKILKTLMENFGRPVSRSSLVEKLWD-Y 189 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E ++ H+ +R KL G + + R +GY + Sbjct: 190 ERETTERAIDVHVKHIRDKLGKYKGL--IKTVRGVGYKFE 227 >gi|24373510|ref|NP_717553.1| transcriptional regulatory protein PhoP [Shewanella oneidensis MR-1] gi|24347813|gb|AAN54997.1|AE015637_13 transcriptional regulatory protein PhoP [Shewanella oneidensis MR-1] Length = 224 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 3/151 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130 + P++ ++ + Q ++ ++G DD + KP E++AR+ A+ RR +G Sbjct: 72 KAPILILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPVITSGE 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 +++ + + ++ + E ILEYLM + + VAK ++ IYG D+ + N + Sbjct: 132 LKLDLAAKQVTLGNDIMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDPNTI 189 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E +S+LRKKL +P+ + R GY + Sbjct: 190 EVMVSRLRKKLTRDGIDNPIATIRGQGYKFN 220 >gi|305666817|ref|YP_003863104.1| response regulator DrrA [Maribacter sp. HTCC2170] gi|88709041|gb|EAR01275.1| response regulator DrrA [Maribacter sp. HTCC2170] Length = 232 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 7/151 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +RA P+I ++ + + G DD + KP RE+LARV A+ RR Sbjct: 61 VEICKKLRAVKNTPIIMLTAKSEEIDRVLGLEIGADDYITKPFSIRELLARVKAVLRRTD 120 Query: 121 VSNNRAE-TGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + E T I + D R ++ + L +E +L + +N G+ +T++ Sbjct: 121 IKETKKENTASIHAEGLFIDIDKRKVLLEDDKIELSPKEFELLVLMASNPGRNYTRTELL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 + I+G E E+ V SHI++LR K+ + + Sbjct: 181 NIIWGYNFEGY-EHTVNSHINRLRAKIESDM 210 >gi|65318077|ref|ZP_00391036.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] Length = 225 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + + V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQHAQIQYHGILWNEAKHSASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D+ K G W Sbjct: 179 L-NXNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220 >gi|332799978|ref|YP_004461477.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332697713|gb|AEE92170.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 225 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 17/148 (11%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 L I + P+I ++ + + DSG DD + KP E+LAR+ A+ RR Sbjct: 63 LKHIRKQEIATPVILLTAKGEISDKVMGLDSGADDYLPKPFATEELLARIRALSRRKGDI 122 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 LK + + +++ D +D L +E +LE+LM + +K I Sbjct: 123 LPDSSLKYGDIELDALNLKLSKDSKD-------VKLTLKESELLEFLMLRKNIVTSKELI 175 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G FD VE N VE +IS LRKKL Sbjct: 176 IEKLWG-FDSEVEPNNVEVYISFLRKKL 202 >gi|319639384|ref|ZP_07994134.1| BasR protein [Neisseria mucosa C102] gi|317399279|gb|EFV79950.1| BasR protein [Neisseria mucosa C102] Length = 225 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 14/167 (8%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I VP++ ++ L + L+ D G DD + KP E+ AR+ A+ RR Sbjct: 63 LAQIRNGGCTVPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLRR---H 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +A+T G I + EV G + L +E +L+ L+ G ++++ + Sbjct: 120 GGQAQTLLTNGIITLNPSTHQAEVVGQEQAVMLSNKEFAVLQALLLRPGMILSRSDLEDK 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 IYG + E VE N V+ I LRK KLG + + + R +G+ + N Sbjct: 180 IYG-WGEEVESNAVDFLIHALRK----KLGKEAIQNVRGVGWLVAQN 221 >gi|313891209|ref|ZP_07824828.1| response regulator receiver domain protein [Streptococcus pseudoporcinus SPIN 20026] gi|313120572|gb|EFR43692.1| response regulator receiver domain protein [Streptococcus pseudoporcinus SPIN 20026] Length = 216 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 73/143 (51%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LEL + +R S VP++ ++ T L F+ + D V KP ++ R+ I+R+L+ Sbjct: 61 LELLQAVRKISSVPVVMLTAMADEYTQLVSFNHQISDYVVKPFSPLILIKRIENIFRQLQ 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ G + +F D E L ++E I+ +L +GK V + ++ ++G Sbjct: 121 -GDDYIRIGDVELFLDEGKVLADKEEAILTKKEYDIMTFLAKRKGKIVTRERLMKEVWGY 179 Query: 181 FDEAVEENVVESHISKLRKKLRN 203 E ++ V+++HI +RKK+ N Sbjct: 180 --EELDSRVLDNHIKNIRKKIPN 200 >gi|306820460|ref|ZP_07454096.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551535|gb|EFM39490.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 225 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/164 (21%), Positives = 80/164 (48%), Gaps = 1/164 (0%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE ++ R ++A S P++ ++ L + G D+ + KP ++LAR+ + Sbjct: 57 GESGFQICRDVKAKSSCPILVLTSRDKLSDEIYSLKLGADEYLTKPFRREKLLARIENVL 116 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +R + N E + + V G LP+ + ++LE + + V+K ++ Sbjct: 117 KRYEGRANLLERDNFLLDKNTYTLYVNGSSVVLPQNQGKLLETFLTSDRDIVSKEELSQK 176 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G E ++EN ++ ++++L+K + + +++ R LGY + Sbjct: 177 LWGT-SEFIDENALQVNMTRLKKAMSDAKMSHKIETVRGLGYKL 219 >gi|299133242|ref|ZP_07026437.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298593379|gb|EFI53579.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 219 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 76/150 (50%), Gaps = 6/150 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPI 131 +P+I ++ ++++ + D G DD + KP RE+LAR+ A+ RR + ++ G + Sbjct: 73 LPVIVVTAQDNVESRIQGLDLGADDYMTKPFEMRELLARMRAVLRREGSGATSQLSNGTL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + G+ L RE +L L+ G V+++ + IYG ++E VE N +E Sbjct: 133 HLDPATHEATYNGKTASLTSREFSLLYALLVRPGVIVSRSDLEKEIYG-WNEEVESNAIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I +R+K + + + R +G+ +D Sbjct: 192 FFIHSVRRKFDASI----IRNVRGIGWMVD 217 >gi|295104470|emb|CBL02014.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 232 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/200 (23%), Positives = 94/200 (47%), Gaps = 21/200 (10%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+GY +DG LE FN++ + D+ ++ + LE+ R IR Sbjct: 23 LTKEGYQVTVANDGEEGLEKFNAV----------KPDMVLLDVMMPRMDG--LEVCRRIR 70 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 P++ ++ + + G DD + KP +E++AR+ A+ RR + ++ AE+ Sbjct: 71 KAGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQTTSAAAES 130 Query: 129 GP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +R+ + + V+G+V P +E +L L ++ + + Q+ ++G F Sbjct: 131 TEGVSEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLLDEVWG-F 189 Query: 182 DEAVEENVVESHISKLRKKL 201 + + ++ H+ +LR+KL Sbjct: 190 EYYGDSRTIDVHVKRLREKL 209 >gi|146321223|ref|YP_001200934.1| response regulator [Streptococcus suis 98HAH33] gi|253753905|ref|YP_003027046.1| response regulator protein [Streptococcus suis P1/7] gi|253755220|ref|YP_003028360.1| response regulator protein [Streptococcus suis BM407] gi|330832445|ref|YP_004401270.1| response regulator [Streptococcus suis ST3] gi|145692029|gb|ABP92534.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus suis 98HAH33] gi|251817684|emb|CAZ55432.1| response regulator protein [Streptococcus suis BM407] gi|251820151|emb|CAR46488.1| response regulator protein [Streptococcus suis P1/7] gi|292558663|gb|ADE31664.1| Response regulator receiver: Transcriptional regulatory protein, C-terminal [Streptococcus suis GZ1] gi|319758447|gb|ADV70389.1| response regulator [Streptococcus suis JS14] gi|329306668|gb|AEB81084.1| response regulator [Streptococcus suis ST3] Length = 234 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 12/174 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S VP++ +S S + + G DD V KP +RE+ ARV A+ RR + Sbjct: 61 LEVARTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSE 120 Query: 121 VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 ++ + G + + D + G+ L RE +L +L + G+ + + Sbjct: 121 LAETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTR 180 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY I N Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYFIKGN 233 >gi|27366129|ref|NP_761657.1| Two-component system response regulator QseB [Vibrio vulnificus CMCP6] gi|27362329|gb|AAO11184.1| Two-component system response regulator QseB [Vibrio vulnificus CMCP6] Length = 219 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 22/219 (10%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 +L K G++ DG+ + EEW + ++ + KG I Sbjct: 19 SLEKTGWVPELSQDGI--DALYRATSEEWDAIVLDLGLPKLDGLTVLKG--------IRD 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 + P++ +S +L ++ ++G DD + KP E++AR+ A RR S N + Sbjct: 69 ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPV 126 Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 I S D R +V QG+ L E +++ Y + N K +++T++ IY FD Sbjct: 127 MQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFVHNADKVISRTELVEHIYKQDFDR- 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + N +E I ++RKK+ + + + R LGY ++ N Sbjct: 186 -DSNTIEVFIGRIRKKIAPNI----IKTVRGLGYQLNAN 219 >gi|81240494|gb|ABB61204.1| putative 2-component transcriptional regulator [Shigella dysenteriae Sd197] Length = 232 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 3/160 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 58 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 117 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 118 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 177 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201 G+ + +T I S I+G+ FD + N V+ I +LR K+ Sbjct: 178 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKV 215 >gi|71280839|ref|YP_269426.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] gi|71146579|gb|AAZ27052.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] Length = 228 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 5/164 (3%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G ++L+ R ++ S+V ++ D + ++ SG DD + KP E+ AR+ + Sbjct: 59 GIEILKTLRRLKKQSKVLILSAKDL--VGDRIEGLLSGADDYMTKPFSFDELHARLLTLT 116 Query: 117 RR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR L V N+ R+ + + E L E +I+E L N+ K V+ ++ Sbjct: 117 RRGGLLVDNDCIMLHGYRIDLQLKSLLFKTEEIELTPTEYKIIECLFLNKNKVVSIEKMS 176 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I G +D A+ +N +E+H+S +RKK+++ P+ +KR GY Sbjct: 177 EFIVGRYD-AIAKNSLEAHLSSIRKKVKHLEEQLPIKNKRGFGY 219 >gi|71908789|ref|YP_286376.1| DNA-binding response regulator CreB [Dechloromonas aromatica RCB] gi|71848410|gb|AAZ47906.1| two component transcriptional regulator, winged helix family [Dechloromonas aromatica RCB] Length = 226 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + DG + E L ++ D+ ++ L Sbjct: 3 ILIVDDEPAISETLAYALRSDGFTTESCTLGAQALTLLAAGGHDLVVLDVGL--PDMSGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R +S VP++ ++ + + G DD V KP RE+++R+ AI RRL Sbjct: 61 DVCRALRRYSDVPVLFLTARSDEVDRIVGLELGGDDYVAKPFSPREVVSRIRAILRRLNP 120 Query: 122 SNNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 A P V DG G L R E +L L+ G+ +++TQI + Sbjct: 121 EPRLAAAPPPTPSRFAVDRDGLRIAYHGHWLNLTRYEYLLLALLLERPGRILSRTQIMES 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ E++E V++HI LR KLR + D + + R LGYSI Sbjct: 181 VWQDGGESLERT-VDTHIKTLRGKLRGLRPDEDVIVTHRGLGYSI 224 >gi|149365314|ref|ZP_01887349.1| two-component system response regulator [Yersinia pestis CA88-4125] gi|167469861|ref|ZP_02334565.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis FV-1] gi|218929914|ref|YP_002347789.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis CO92] gi|115348525|emb|CAL21464.1| two-component system response regulator [Yersinia pestis CO92] gi|149291727|gb|EDM41801.1| two-component system response regulator [Yersinia pestis CA88-4125] Length = 239 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 9/174 (5%) Query: 36 EWLQSSA------REDVSAIEAF-LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88 +WL + A R+ AI L+ G + L R IR S +P++ ++ L Sbjct: 39 QWLTNGAEVVATVRQTPPAIILLDLMLPGSDGITLCREIRRFSDIPIVMVTAKTEEIDRL 98 Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEVF 147 + G DD + KP RE++ARV I RR ++ + P+ + QG + Sbjct: 99 LGLEIGADDYICKPYSPREVVARVKTILRRCSQQRHQPTDDAPLLINESRFQASYQGHML 158 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L E R+L+ L + G ++ Q+ + +Y + V + ++SHI L++KL Sbjct: 159 ELTPAEFRLLKILASQPGHVFSREQLLNNLYDDY-RVVTDRTIDSHIKNLQRKL 211 >gi|121605634|ref|YP_982963.1| two component transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120594603|gb|ABM38042.1| two component transcriptional regulator, winged helix family [Polaromonas naphthalenivorans CJ2] Length = 231 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 14/167 (8%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+IR S +P+I ++ + + + G DD V KP RE++ARV + RR +V+ Sbjct: 63 LCRLIRKESDIPVIMLTARGEVMDRVVGLELGADDYVPKPFEPRELVARVQTVLRR-RVA 121 Query: 123 NNRAETGP--IRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A T P R+ DG R + QGE+ L E +L L G+ ++ I Sbjct: 122 PPAAITPPDTARLVFDGLVLDPVTRTVQRQGELLELTSTEFDLLHLLAREAGRVFSRDDI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 S + G + + V+ +S+LRKKL D + + R GYS+ Sbjct: 182 LSRLRG-HEAELYTRAVDIVVSRLRKKLEP---LDCIKTLRNAGYSL 224 >gi|329850817|ref|ZP_08265662.1| transcriptional activator protein copR [Asticcacaulis biprosthecum C19] gi|328841132|gb|EGF90703.1| transcriptional activator protein copR [Asticcacaulis biprosthecum C19] Length = 224 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 6/179 (3%) Query: 45 DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D ++ L GK G VL++ R ++ P+I ++ + ++ ++G DD + KP Sbjct: 46 DAIVLDRMLPGKDGLSVLKMLRA--GGNRTPVILLTAMGGISDRVEGLENGADDYLTKPF 103 Query: 104 HHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161 E+ AR+ I RR V G I + R G+ L RE +LE LM Sbjct: 104 ALSELSARLNVIMRRPAVVEVETILRVGNIEMDLRKRTVHRAGKRIELQPREVLMLEELM 163 Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N + + K + ++ FD N+VE+HIS+LR KL D + + R GY I Sbjct: 164 RNVHRVMTKAMLLERVWD-FDFDPHTNIVETHISRLRAKLNAGFDDDAIITVRGAGYMI 221 >gi|321315077|ref|YP_004207364.1| two-component response regulator YkoH [Bacillus subtilis BSn5] gi|320021351|gb|ADV96337.1| two-component response regulator (YkoH) [Bacillus subtilis BSn5] Length = 228 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 9/164 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + Q P+I ++ S+ + D G +D V KP E+LAR+ A R + Sbjct: 66 LRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR--QNG 123 Query: 123 NNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + D R E EV L RE +L Y++ + + + + QI S+ Sbjct: 124 TKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSS 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD + NVV+ +I +RKKL + + R +GY+I Sbjct: 184 VWG-FDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAI 226 >gi|237737656|ref|ZP_04568137.1| two-component response regulator [Fusobacterium mortiferum ATCC 9817] gi|229419536|gb|EEO34583.1| two-component response regulator [Fusobacterium mortiferum ATCC 9817] Length = 232 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 77/142 (54%), Gaps = 3/142 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R +S VP+I ++ ++++ ++ D G DD + KP + E+ AR+ R K Sbjct: 62 EVCKELRKNSDVPIIVLTAKENIRSKVELLDMGADDYITKPFNIEELFARMRVALRNKKD 121 Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N+ + + + ++ ++ L + E R+LE + NR +++ +I + I+G Sbjct: 122 YQELNQLKYEDLVLDIIKKELIIEKRKVSLTKTEYRLLELFILNREITISREKIITEIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKL 201 +D EE +V+ +++ LRKK+ Sbjct: 182 -YDFEGEEKIVDVYLNSLRKKI 202 >gi|167824627|ref|ZP_02456098.1| DNA-binding response regulator [Burkholderia pseudomallei 9] Length = 254 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 4/153 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 VP+I +S+ ++ F +G DD V KP E LAR+AA+ RR + E G I Sbjct: 71 VPVIVLSNAMQEMQIVEAFSAGADDYVLKPAREAEFLARIAAMMRRKGHAVSGTIEIGGI 130 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVV 190 + + + GE + E ILE + + G V + + + I+G DEAV + + Sbjct: 131 AIDLGWKAVRIDGEPVRMAPIEYEILEMMARHLGSVVQREVLVNRIWGRSIDEAVSRS-L 189 Query: 191 ESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++H+ ++R KL+ + + + S LGY ++W Sbjct: 190 DTHVYRIRHKLKVHGVSNVSLRSVYNLGYRLEW 222 >gi|158340377|ref|YP_001521733.1| two component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310618|gb|ABW32232.1| two component transcriptional regulator, winged helix family [Acaryochloris marina MBIC11017] Length = 222 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 86/169 (50%), Gaps = 16/169 (9%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ +R H +++P++ ++ +Q + + G DD + KP E+LARV RL Sbjct: 61 LEVLADLRGHGAKLPILILTARDDIQDKISGLEGGADDYMTKPFRFEELLARVRV---RL 117 Query: 120 KVSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + +++ + P+ + + R +V + LP RE + E + G+ +++ Q Sbjct: 118 RTNIHQSTSQPLTMVARNVVLDLRARKAKVHDQWIELPAREFILTEAFFQHPGQVLSRQQ 177 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++G +D N+V+ ++ LRK KLG D + + R +GY ++ Sbjct: 178 LLDRVWG-YDYDPGSNIVDVYVGYLRK----KLGDDLIQTVRGVGYRLN 221 >gi|126668370|ref|ZP_01739328.1| Two component Transcriptional regulator, Winged helix family protein [Marinobacter sp. ELB17] gi|126627186|gb|EAZ97825.1| Two component Transcriptional regulator, Winged helix family protein [Marinobacter sp. ELB17] Length = 259 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLE----GFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57 ++I+D+ + + G+D SL+ G +L L ++ DV ++ L G Sbjct: 30 LLIIEDQVDLAENLFEFLGEDRYSLDFASDGLTALH----LLATQSYDVIVLDLML--PG 83 Query: 58 EKVLELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 ++ R IR Q P+I ++ ++ F+ G DD + KP RE+ R+ A+ Sbjct: 84 VNGYDICRRIRQDLQCQTPVILMTALSAMADKEKGFNCGADDYLVKPFELRELQLRIEAL 143 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +RR G IR + ++G L R+ E L+ ++ + Sbjct: 144 HRRHSPQRPVLAAGNIRFDPGTLEVALRGSKTTLSGTPARLFELLVRAYPSFLSHEALTD 203 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++G E N + +HI LRK L+ LG V + GYS++ Sbjct: 204 AVWGAHHGETEGNSLRTHIYTLRKSLQVGLGNGLVKTIHGRGYSLE 249 >gi|37527064|ref|NP_930408.1| two-component response regulator [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786497|emb|CAE15553.1| Two-component response regulator [Photorhabdus luminescens subsp. laumondii TTO1] Length = 225 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 5/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + +P++ ++ + + +SG DD + KP +E+ AR+ A+ RR Sbjct: 63 LVRLRKRGQNLPVLLLTAKTDVSERVKGLNSGADDYLTKPFDLQELEARIRALLRRSAGV 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 T V+ D + E L RE +L L RG+ V+K Q+F ++ L D Sbjct: 123 LQETLTFGSLVYQDDGYFVLNDEPLALTPRELSVLTTLFHRRGRPVSKQQLFEQVFALSD 182 Query: 183 EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 EA ++ +E ++ ++RKKL + +G + + R LGY ++ Sbjct: 183 EANPQS-IELYVHRIRKKLSGSNVG---ISTLRGLGYRLE 218 >gi|21388712|dbj|BAC00821.1| phosphate regulon transcriptional regulatory protein [Rhodobacter sphaeroides f. sp. denitrificans] Length = 230 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 11/154 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 VP+I +S + ++G DD V KP E++ARV + RR + S+ G Sbjct: 81 VPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRARPSS----VGLTL 136 Query: 133 VFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 F D R DPE G++ L E R+L M G+ ++ Q+ ++G D V+ Sbjct: 137 EFEDIRLDPETHKVHRGGQLLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG-RDIYVD 195 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+ H+ +LRK L G DPV + R GY++ Sbjct: 196 SRTVDVHVGRLRKALCLHGGEDPVRTVRGAGYAL 229 >gi|170077473|ref|YP_001734111.1| two-component response regulator, OmpR subfamily protein [Synechococcus sp. PCC 7002] gi|190358881|sp|P32040|Y851_SYNP2 RecName: Full=Probable transcriptional regulatory protein SYNPCC7002_A0851 gi|169885142|gb|ACA98855.1| two-component response regulator, OmpR subfamily protein [Synechococcus sp. PCC 7002] Length = 251 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 20/214 (9%) Query: 3 VLIDDRALVKD---------GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL 53 ++++D A+++D GY F D+G + G N L+ E+ D+ ++ L Sbjct: 22 LVVEDEAVIRDMIVMGLEEEGYEVFFADNGRT--GLNMLQNPEFNAPDMPLDLVILDIML 79 Query: 54 IGKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+L R +R + +P++ +S S + + G DD + KP RE++AR Sbjct: 80 --PEVNGLDLCRFLRYQGNTIPILVLSAKASETDRVLGLEVGADDYLTKPFSLRELVARC 137 Query: 113 AAIYRRLKV-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 A+ RR + N+ + I +F + V+GE L +E R+LE M+ + Sbjct: 138 RALLRRQQFIRSTPKNSVRQFKDISLFPEECRVTVRGEEVSLSPKEYRLLELFMSYPRRV 197 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ Q+ ++G D + V+ HI LR+KL Sbjct: 198 WSRDQLIEQVWGA-DFLGDTKTVDVHIRWLREKL 230 >gi|170739881|ref|YP_001768536.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168194155|gb|ACA16102.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 223 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 6/149 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPI 131 P+I ++ + + ++G DD + KP E+ ARV A+ RR + N T G + Sbjct: 73 TPVIILTARDQISDRIAGLNAGADDYLIKPFDLFELTARVGAVGRRYSGNPNPLVTIGDL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + R G+ PL RE + E L+ ++K Q+ +Y FD VE N +E Sbjct: 133 DIDLAARSVHRAGKPVPLTAREWSLFEALVQRPHALLSKAQLEERLYA-FDAEVESNTIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +LRK K+G + +++ R +GY + Sbjct: 192 VYVGRLRK----KIGAEAIETVRGMGYRL 216 >gi|124383639|ref|YP_001026518.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|167002013|ref|ZP_02267803.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|237811857|ref|YP_002896308.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|238562239|ref|ZP_00440708.2| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|254177831|ref|ZP_04884486.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|254180149|ref|ZP_04886748.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|254188440|ref|ZP_04894951.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|254199507|ref|ZP_04905873.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|254205822|ref|ZP_04912174.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|254297982|ref|ZP_04965435.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|254358777|ref|ZP_04975050.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|124291659|gb|ABN00928.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|147749103|gb|EDK56177.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|147753265|gb|EDK60330.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|148027904|gb|EDK85925.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|157806798|gb|EDO83968.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|157936119|gb|EDO91789.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|160698870|gb|EDP88840.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|184210689|gb|EDU07732.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|237506780|gb|ACQ99098.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|238522969|gb|EEP86410.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|243062258|gb|EES44444.1| DNA-binding response regulator [Burkholderia mallei PRL-20] Length = 261 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 4/153 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 VP+I +S+ ++ F +G DD V KP E LAR+AA+ RR + E G I Sbjct: 78 VPVIVLSNAMQEMQIVEAFSAGADDYVLKPAREAEFLARIAAMMRRKGHAVSGTIEIGGI 137 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVV 190 + + + GE + E ILE + + G V + + + I+G DEAV + + Sbjct: 138 AIDLGWKAVRIDGEPVRMAPIEYEILEMMARHLGSVVQREVLVNRIWGRSIDEAVSRS-L 196 Query: 191 ESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++H+ ++R KL+ + + + S LGY ++W Sbjct: 197 DTHVYRIRHKLKVHGVSNVSLRSVYNLGYRLEW 229 >gi|94497683|ref|ZP_01304251.1| DNA-binding response regulator [Sphingomonas sp. SKA58] gi|94422900|gb|EAT07933.1| DNA-binding response regulator [Sphingomonas sp. SKA58] Length = 236 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 7/138 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPI 131 P++ +S + ++ +SGVDD + KP E++ARV A++RR ++ + G + Sbjct: 80 PVLMLSALGRSEHRVEGLESGVDDYLAKPFEPDELVARVRALWRRASRRSHESVLLFGDL 139 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190 R QG PL +E + YLM + G+ V + + ++ L FD + NVV Sbjct: 140 ECHVKARTAFRQGRHLPLSPKEFELFRYLMDHAGEVVTREMLLRHVWKLSFDP--QTNVV 197 Query: 191 ESHISKLRKKLRNKLGFD 208 + ++ +LR+KL GFD Sbjct: 198 DVNVGRLRRKLEE--GFD 213 >gi|17548744|ref|NP_522084.1| putative two component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430993|emb|CAD17674.1| putative two component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 221 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 14/203 (6%) Query: 28 GFNS------LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 G+N+ ++ ++W+ S+ + + G+G LE R A S VP+I S Sbjct: 25 GYNTTWVRRLMDAQKWMTSNTFDAIVLDLGLPDGEGHLFLEALRA--AQSDVPVIIASAR 82 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDP 140 +L L D G DD + KP E++AR+ A+ RR S NR G + V + Sbjct: 83 DALSERLKGLDEGADDFLVKPFPVDELIARLRAVLRRHAGQSTNRWSVGSLVVEPSQKRV 142 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 G V L RE ++L L+ + V + + A+Y + V N +E I Sbjct: 143 TQDGNVVELTPREYQLLFELVRRAHRWVTRETLMDALYREGNR-VSANALEVVI----HH 197 Query: 201 LRNKLGFDPVDSKRFLGYSIDWN 223 LR KLG + + R +GY I N Sbjct: 198 LRGKLGDGVIQTIRGVGYMIGGN 220 >gi|322387744|ref|ZP_08061353.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321141611|gb|EFX37107.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 234 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 11/153 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ + IR S VP+I +S S + + G DD V KP +RE+ ARV A+ RR Sbjct: 61 LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTE 120 Query: 119 -LKVSNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + V N +T + + D + GE L RE +L +L ++ G+ + + Sbjct: 121 LVAVDNQEEDTKLQSLQIRDLEILPDAYVAKKYGEELDLTHREFELLHHLASHLGQVITR 180 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ I +LR+K+ + Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 212 >gi|315304718|ref|ZP_07874912.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria ivanovii FSL F6-596] gi|313626910|gb|EFR95849.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria ivanovii FSL F6-596] Length = 236 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 12/121 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAET------GPIRVFSDGRDPEV 142 G DD + KP RE++AR+ AI RR + V N E G +++ + + + Sbjct: 95 GADDYMTKPFSPREVVARIKAILRRTEGKAEAVEENSDEMEAMILIGDLKILPESYEVYL 154 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 Q E+ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR KL Sbjct: 155 QDELLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKLE 213 Query: 203 N 203 Sbjct: 214 T 214 >gi|313887137|ref|ZP_07820833.1| response regulator receiver domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923366|gb|EFR34179.1| response regulator receiver domain protein [Porphyromonas asaccharolytica PR426713P-I] Length = 233 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 10/166 (6%) Query: 62 ELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 +L +IR ++ P+I ++ + L F+ G DD + KP +E+ AR+ AI R Sbjct: 65 KLAELIRRDKKLTTPIIFLTAKGTENDLLTGFNIGADDYMAKPFSIKELQARIQAILMRS 124 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 L ++ E G + + D + V GE L ++E ILE L + K ++ +I Sbjct: 125 LQGGLDFEESQIEIGTLLIDLDAKQVFVNGEPIDLTKKELEILELLARDPSKVFSREEIL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ D V E ++ HI+++RKKLR G ++ F GY + Sbjct: 185 DRVWR-EDVFVMERTIDVHITRIRKKLRGS-GIKIINRSGF-GYCL 227 >gi|302878903|ref|YP_003847467.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] gi|302581692|gb|ADL55703.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] Length = 221 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 4/159 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L R+ + + +P++ ++ SL + D G DD + KP +E+ AR+ A+ RR + + Sbjct: 63 LSRLRQRGNLIPVLLLTARNSLTDRVHGLDGGADDYLAKPFELQELEARIRALLRRSQPI 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + R E G + + +G+ + L RE +L+ LM G+ ++K + + Sbjct: 123 GHARLEVGGLCLDMEGQCATLNQVPLDLLARELNLLKILMQQAGRVISKDVLCEQLSSAG 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E + N VE ++ +LRKK+ + G + + R LGY + Sbjct: 183 EE-ISSNAVEVYVHRLRKKIES--GGVSILTLRGLGYML 218 >gi|299139323|ref|ZP_07032498.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298598592|gb|EFI54755.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 226 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 6/170 (3%) Query: 38 LQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 + + R D + ++ +L G G +VLE R R + P++ ++ ++ L FD G D Sbjct: 39 MMLNGRYDAALLDIYLPGMDGFEVLEQVRARRC--KTPILMLTAVDAVPKILQAFDMGAD 96 Query: 97 DVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154 D + KP +LARV+AI RR++ V G I + R G+ L R++ Sbjct: 97 DYLIKPFLLEILLARVSAIARRMQPAVEPPVVLAGGITLDRSRRVAIRGGKEIYLTRKQF 156 Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 +L+ LM G ++ Q+ A +G + V+EN ++ +I LR KL +K Sbjct: 157 ELLDALMRRSGMVTSRDQLIEAGWGYLAD-VKENTLDVYIHGLRAKLEDK 205 >gi|120610179|ref|YP_969857.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120588643|gb|ABM32083.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] Length = 232 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 14/190 (7%) Query: 28 GFNSLEFEEWLQSSAR------EDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 GF + E + AR D++ ++ L G LE+ R R H+ P+I ++ Sbjct: 29 GFEAEHLAEGPAALARLTGPTPPDLTLLDIML--PGVDGLEVLRQARRHTDRPIIMLTAR 86 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDP 140 L + G DD + KP RE++ARV + RR + A+ P+ + Sbjct: 87 VEEVDRLIGLELGADDYICKPFSPREVVARVRTVLRRSTAHPSPAAQDAPLVLDEAFWQV 146 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA--VEENVVESHISKLR 198 ++G L RE R+L+ L ++ G+ ++ Q+ Y D+ V E ++SHI LR Sbjct: 147 HLRGTPVSLTPREFRLLQALASHSGRIFSRAQLLDMAY---DDTLDVNERAIDSHIKNLR 203 Query: 199 KKLRNKLGFD 208 +KLR G D Sbjct: 204 RKLRAADGSD 213 >gi|258542012|ref|YP_003187445.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-01] gi|256633090|dbj|BAH99065.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-01] gi|256636147|dbj|BAI02116.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-03] gi|256639202|dbj|BAI05164.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-07] gi|256642256|dbj|BAI08211.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-22] gi|256645311|dbj|BAI11259.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-26] gi|256648366|dbj|BAI14307.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-32] gi|256651419|dbj|BAI17353.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654410|dbj|BAI20337.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-12] Length = 243 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 96/186 (51%), Gaps = 21/186 (11%) Query: 45 DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D+ ++ L G G V+E R + ++P++ +S ++ + +G DD + KP Sbjct: 65 DIMVVDRLLPGLDGLSVIETMR--QQGIRMPVLVLSALSAVDDRVTGLKAGGDDYLTKPF 122 Query: 104 HHREILARVAAIYRRL-KVSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERR 155 E++AR+ A+ RR + + GPI RV+ DGR+ E+ LP RE R Sbjct: 123 AIEELVARIEALLRRPDDTRSTKLHLGPIDMDLIERRVWRDGREIEL------LP-REFR 175 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKR 214 +LEYLM G+ + ++ + ++ + N+V+ HI KLR+K+ + G +P ++S R Sbjct: 176 LLEYLMRRPGQVLTRSMLLEDVWQ-YRFIPRTNLVDVHIGKLRRKI-DGPGEEPLIESIR 233 Query: 215 FLGYSI 220 G+ + Sbjct: 234 GTGFRL 239 >gi|255283555|ref|ZP_05348110.1| DNA-binding response regulator CiaR [Bryantella formatexigens DSM 14469] gi|255265817|gb|EET59022.1| DNA-binding response regulator CiaR [Bryantella formatexigens DSM 14469] Length = 226 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 3/129 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV-FPL 149 F G DD + KP+++ E+ R+ A+ RR ++N R V + + L Sbjct: 91 FSIGTDDYMTKPVNYEELHWRIDALLRRADITNARKIVIGETVLDEATYTLSKASCSIEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 P++E +L L++ G K+Q+ I+G FD E+ V++HIS+LR ++ + F Sbjct: 151 PKKEFELLYKLLSYPGIIFTKSQLLDDIWG-FDSDSSEDTVKTHISRLRSRVSDFTEFQI 209 Query: 210 VDSKRFLGY 218 + K LGY Sbjct: 210 ITIKG-LGY 217 >gi|330822042|ref|YP_004350904.1| two component transcriptional regulator, winged helix family [Burkholderia gladioli BSR3] gi|327374037|gb|AEA65392.1| two component transcriptional regulator, winged helix family [Burkholderia gladioli BSR3] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 2/131 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GP 130 VP+I ++ QT L +G DD + KP E+LAR+AA+ RR V T G Sbjct: 73 NVPVIVLTARDDEQTVLTALRAGADDYLVKPARAAEMLARIAAVARRYGVGGKAPLTLGA 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + V G L ++E + Y+ + G+ +++ + + ++G+ + V+ V Sbjct: 133 YEIDIQRVRIAVNGAPVDLTQKEFDLAVYMFQSPGQLLSRDHLLNRVWGVHAD-VDTRTV 191 Query: 191 ESHISKLRKKL 201 ++H+S+LRKKL Sbjct: 192 DTHVSRLRKKL 202 >gi|322513689|ref|ZP_08066784.1| phosphate regulon response regulator [Actinobacillus ureae ATCC 25976] gi|322120497|gb|EFX92404.1| phosphate regulon response regulator [Actinobacillus ureae ATCC 25976] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 3/149 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 +Q+P++ ++ S + ++G DD V KP + ++AR+ A+ RR +N+ Sbjct: 74 TQIPILMLTARSSEDDCITCLNTGADDYVTKPFSPKVLIARIEALLRRTYQNNDVINIDD 133 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + Q + L E ++L + M + K ++ Q+ ++G D VE+ V Sbjct: 134 LILDQNAKRVTFQKKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWG-NDIYVEDRTV 192 Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +S+I +LRK L GF+ V + R GY Sbjct: 193 DSYIRRLRKSL-EPCGFERYVQTVRGSGY 220 >gi|319652817|ref|ZP_08006923.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317395394|gb|EFV76126.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 231 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 19/148 (12%) Query: 65 RIIRAHSQVPLIGIS--DYPS-LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R+IR+HS VP+I +S D+P+ + ++ G DD V KP H ++A++ AI RR V Sbjct: 65 RMIRSHSNVPIIFLSSRDHPTDMVMSMQL---GADDFVQKPFHFEVLIAKIQAILRR--V 119 Query: 122 SNNRAETGPIRVFSDG----RDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N A ++ + D V E L + E IL+ L+ + + V++ I Sbjct: 120 YNYSAVQNNLKTWCDAAVDFEKNTVTNESGCIELTKNEIYILKLLIERKNQIVSRDDI-- 177 Query: 176 AIYGLFDEA--VEENVVESHISKLRKKL 201 I L+D+ + +N + +I++LRKKL Sbjct: 178 -INSLWDDKRFISDNTLTVNINRLRKKL 204 >gi|319791294|ref|YP_004152934.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315593757|gb|ADU34823.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 227 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 5/165 (3%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LEL + +RA VP++ ++ + Q + G DD + KP E+LAR+ A+ RR Sbjct: 60 LELCQTLRAEGHHVPVLMLTALSNTQDKVSGLRLGADDYLTKPFAFEELLARIEALLRRG 119 Query: 120 KVSNNRAETGPIRVFSDGRD---PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + RA T + R+ G+ L +E LE LM G+ ++ +I S Sbjct: 120 REMRPRATTLQVADLVLDRERMSVTRAGKPVALTAKELAFLELLMTAPGRVYSRERILSN 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G ++ + N+V+ ++ +LR K+ + + + R LGY +D Sbjct: 180 VWGTNEDPL-TNIVDVYVRRLRGKIDDGHPVALLQTVRGLGYRLD 223 >gi|310639847|ref|YP_003944605.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309244797|gb|ADO54364.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 219 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 5/130 (3%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPR 151 G DD + KP E+LAR+ A R + + E GP +V ++ Q +V L Sbjct: 91 GADDYIVKPFSFNELLARIEARLRN-QFPDLLGEVVHGPFQVDDRRKEIRYQSQVLELSP 149 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 E +L++L+ N G ++K++I ++G +D E+N+VE +I LR+KL++K + Sbjct: 150 TEYELLKFLVLNHGIVLSKSRILDRVWG-YDFGGEDNIVEVYIRSLREKLKDK-EHRVIR 207 Query: 212 SKRFLGYSID 221 + R +GY +D Sbjct: 208 TLRGVGYRVD 217 >gi|258645821|ref|ZP_05733290.1| phosphate regulon response regulator PhoB [Dialister invisus DSM 15470] gi|260403191|gb|EEW96738.1| phosphate regulon response regulator PhoB [Dialister invisus DSM 15470] Length = 226 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 12/208 (5%) Query: 1 MFVLIDDRALVKD--GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 + ++D ++D GY AL G G +EGF + A D+ ++ L GE Sbjct: 2 LIYCVEDDESIRDLVGY-ALRGQ-GYGMEGFGCADDFYKGMKKAVPDLVLLDVML--PGE 57 Query: 59 KVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 L + + IR + +P+I ++ S + D G DD V KP E+L+R+ ++ R Sbjct: 58 DGLSILKKIREREANIPIIMMTAKSSEFDVVRGLDLGADDYVIKPFGIMELLSRIRSVLR 117 Query: 118 RL-KVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R K++ N+ E G IR + V + + +E ++L YL+ N+G +++ QI Sbjct: 118 RSGKMAENKGELLSFGTIRADRNRHVVTVDEKEVAVTLKEFQLLCYLLLNKGIVLSREQI 177 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 A++ + E +E ++ HI LR+KL Sbjct: 178 MQAVWDIPFE-MESRTIDMHIMSLRQKL 204 >gi|228903599|ref|ZP_04067720.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|228968205|ref|ZP_04129204.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228791468|gb|EEM39071.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228856028|gb|EEN00567.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] Length = 222 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 7/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++D S + + +G DD + KP E++ARV AI RR Sbjct: 59 EICRQIRLVKTTPIIIVTDNISSEDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSD- 117 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + ET + +F D V+ GE L +RE +L +L+ N+ +++ + + Sbjct: 118 CNQQNETNFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQ 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ V NVV+ +I +RKKL+ + + + GYS+ Sbjct: 178 VWG-YNVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 220 >gi|229163815|ref|ZP_04291758.1| Two-component response regulator [Bacillus cereus R309803] gi|228619635|gb|EEK76518.1| Two-component response regulator [Bacillus cereus R309803] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 8/152 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 64 VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123 Query: 123 -------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N+ I V R V L E IL Y M N+G + + Q+ S Sbjct: 124 KQLLENENDTLAIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 I+G ++ A ++ V SHI LR KL K + Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|222153066|ref|YP_002562243.1| response regulator protein [Streptococcus uberis 0140J] gi|222113879|emb|CAR42041.1| response regulator protein [Streptococcus uberis 0140J] Length = 221 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 6/154 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP+I IS + + G DD + KP + A++AA RR + Sbjct: 69 IRKQSTVPIIFISSSNDEMDAVMALNMGGDDYITKPFSLTILDAKIAAFLRR--ATQFAT 126 Query: 127 ETGPIRVFSDGRDPEVQGEV--FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 ++ + + D + EV L E +IL L +N+G V+K ++ +++ D+ Sbjct: 127 DSLSYKNYQLHFDSSLSNEVQKISLSPTEHKILSLLFSNQGAIVSKEELLKSLWD-NDQF 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +++N + ++++LRKKL + + FD + + R +GY Sbjct: 186 IDQNTLNVNMTRLRKKLLD-IDFDYIHTVRGVGY 218 >gi|153955658|ref|YP_001396423.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219856032|ref|YP_002473154.1| hypothetical protein CKR_2689 [Clostridium kluyveri NBRC 12016] gi|146348516|gb|EDK35052.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569756|dbj|BAH07740.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 3/160 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R I+ +PLI ++ + T+ F+ G DD + KP RVAA+ +R + Sbjct: 61 FELCRWIKELKDIPLIFLTACDMEKDTIKGFELGADDYITKPFSVGIFRRRVAAVLKRCE 120 Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N N G + V D + + F L E R+++ +AN GK + + + ++ Sbjct: 121 KENIGNIYNDGYLMVDFDKLMVIRENKAFMLTSSEYRLMKIFVANSGKVLTRQILLQKLW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+E+ + ++++LR K++NK G + + +GY Sbjct: 181 DNDGNFVDEHALTVNVNRLRSKIQNK-GHKYIKTVYGMGY 219 >gi|123967041|ref|YP_001012122.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] gi|123201407|gb|ABM73015.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] Length = 248 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 13/150 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IRA S VP+I ++ ++ + D G DD ++KP +E+ AR+A I RR+ S Sbjct: 67 RRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPSIT 126 Query: 125 RAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ET G + V ++ R GE L E +LE L GK V + + Sbjct: 127 VTETKEVPSGKGVMKFGNLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVPRAE 186 Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201 I ++G A + VV+ ++++LR KL Sbjct: 187 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 216 >gi|4455703|emb|CAB36688.1| putative two-component response regulator [Mycobacterium leprae] Length = 253 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 97/200 (48%), Gaps = 21/200 (10%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R+L +GY +DGV E L+ AR+ A+ ++ LE+ R + Sbjct: 43 RSLSFNGYSVELANDGV-----------EALEMVARDRPDALVLDVMMPRLDGLEVCRQL 91 Query: 68 RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R+ +P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR K ++ A Sbjct: 92 RSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRTK-PDDAA 150 Query: 127 ETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E+ + FSD V EV L R E +LE L+AN + + +++I ++G Sbjct: 151 ESVAMS-FSDLTLDPVTREVARGQRWISLTRTEFALLEMLIANPRRVLTRSRILEEVWG- 208 Query: 181 FDEAVEENVVESHISKLRKK 200 FD N +E ++ LR+K Sbjct: 209 FDFPTSGNALEVYVGYLRRK 228 >gi|314947787|ref|ZP_07851194.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|313645767|gb|EFS10347.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 74/140 (52%), Gaps = 7/140 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVS 122 IR S+VP+I IS + + + G DD V K ++A++ A+ RR ++S Sbjct: 72 IREVSKVPIIFISSRNTNMDMIMAMNMGADDFVTKHFQIDVLIAKINALLRRSYNYTELS 131 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + I + D E+ GE+ L + E R+L LM + GK +++ ++ A++ D Sbjct: 132 SEMMSHNGITLNVDNGSMEINGEIIDLSKNEYRLLFILMKHNGKILSREKLLRALWD--D 189 Query: 183 EA-VEENVVESHISKLRKKL 201 E V++N + +I++LR+K+ Sbjct: 190 ERFVDDNTLTVNINRLRRKI 209 >gi|313112960|ref|ZP_07798604.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624725|gb|EFQ08036.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 232 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/200 (23%), Positives = 92/200 (46%), Gaps = 21/200 (10%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+GY +DG LE FN + + D+ ++ + LE+ R IR Sbjct: 23 LTKEGYQVTVANDGEEGLEKFNQV----------KPDMVLLDVMMPKMDG--LEVCRRIR 70 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 P++ ++ + + G DD + KP +E++AR+ A+ RR + + AE+ Sbjct: 71 KAGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQTTTAAAES 130 Query: 129 GP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +R+ + + V+G+V P +E +L L ++ + + Q+ ++G F Sbjct: 131 TEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLLDEVWG-F 189 Query: 182 DEAVEENVVESHISKLRKKL 201 + + ++ H+ +LR+KL Sbjct: 190 EYYGDSRTIDVHVKRLREKL 209 >gi|261381187|ref|ZP_05985760.1| QseB protein [Neisseria subflava NJ9703] gi|284795806|gb|EFC51153.1| QseB protein [Neisseria subflava NJ9703] Length = 225 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 14/167 (8%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I VP++ ++ L + L+ D G DD + KP E+ AR+ A+ RR Sbjct: 63 LAQIRNGGCTVPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLRR---H 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +A+T G I + EV G + L +E +L+ L+ G ++++ + Sbjct: 120 GGQAQTLLTNGIIMLNPSTHQAEVVGQEQAIMLSNKEFAVLQALLLRPGMILSRSDLEDK 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 IYG + E VE N V+ I LRK KLG + + + R +G+ + N Sbjct: 180 IYG-WGEEVESNAVDFLIHALRK----KLGKEAIQNVRGVGWLVPQN 221 >gi|254488622|ref|ZP_05101827.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. GAI101] gi|214045491|gb|EEB86129.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. GAI101] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 11/154 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P+I +S + ++G DD V KP RE++ARV RR++ A TG Sbjct: 80 IPVIMLSARSEEVDAVRGLETGADDYVVKPYSMRELMARVRTQLRRIRP----AATGGQL 135 Query: 133 VFSD-GRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + D DPE + L E R+L L+ G+ ++ Q+ ++G D V+ Sbjct: 136 CYQDITLDPERHRVNRATQELKLGPTEYRLLVTLLERPGRVFSRDQLLDHVWG-RDIFVD 194 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+ HI++LRK L G DP+ + R GY++ Sbjct: 195 TRTVDVHIARLRKALTQHGGDDPIRTVRGAGYAL 228 >gi|188591286|ref|YP_001795886.1| chemotaxis protein CheY [Cupriavidus taiwanensis LMG 19424] gi|170938180|emb|CAP63166.1| putative response regulator, CheY family [Cupriavidus taiwanensis LMG 19424] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ + +RA + +P++ ++ S+ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLKRLRARGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRG 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+ GR + ++ L RE +LE L+ G+ V+K Q+ + Sbjct: 120 AGGGATLMRHGPLAYDQVGRIAYLNDQMLDLSAREIGLLEILLTRSGRLVSKEQLVDHLC 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E ++ +LRKK+ ++G + + R LGY ++ Sbjct: 180 E-WGEEVSNNAIEVYVHRLRKKI--EVGGIRIATVRGLGYCLE 219 >gi|163759381|ref|ZP_02166467.1| osmolarity response regulator [Hoeflea phototrophica DFL-43] gi|162283785|gb|EDQ34070.1| osmolarity response regulator [Hoeflea phototrophica DFL-43] Length = 235 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 7/169 (4%) Query: 42 AREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVN 100 +R AI L+ GE L + R +RA Q P+I ++ + ++G DD + Sbjct: 46 SRSPADAIVLDLMMSGEDGLAICRRLRAAGDQTPIIMLTARGDPIDRIVGLETGADDYLA 105 Query: 101 KPIHHREILARVAAIYRRLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR 155 KP RE++AR++A+ RR + +++ GP+ + R G L RE Sbjct: 106 KPFEPRELVARLSAVLRRTRGMRDVPTDDTVTIGPLEINFSTRMVTRDGASLKLSSREFA 165 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 +L ++ +RG+ +++ Q+ G D V + V+ I++LR+ L ++ Sbjct: 166 LLAAMVRSRGRPLSRAQLIERALG-RDAEVTDRAVDVQIARLRRALGDR 213 >gi|170727718|ref|YP_001761744.1| two component transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813065|gb|ACA87649.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 230 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 8/151 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETG 129 P++ ++ S Q ++ D+G DD + KP E++AR+ A+ RR S +A G Sbjct: 74 PILILTARDSWQDKVEGLDAGADDYLTKPFQPEELVARLKALIRR---SAGKASPLIHNG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P + + + + + L E ++ EY M + G+ +KT + IY D ++ NV Sbjct: 131 PFSINTSSLEVKKGERLITLSGSEYKLFEYFMLHPGEVKSKTVLTEHIYDQ-DFDLDSNV 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E I +LRKKL + +++ R GY + Sbjct: 190 IEVFIRRLRKKLDPDNQYGLIETLRGQGYRL 220 >gi|50085344|ref|YP_046854.1| putative two-component response regulator [Acinetobacter sp. ADP1] gi|49531320|emb|CAG69032.1| putative two-component response regulator [Acinetobacter sp. ADP1] Length = 218 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 8/163 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G++VL R + S P+I I+ S+ + D G +D + KP E+ AR+ + Sbjct: 59 GDQVLLTLR--KHQSMTPVIMITARDSISDRVTGLDLGANDYLVKPFSLEELSARIRSHI 116 Query: 117 RRLKVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R ++ + I + + + ++ GE+ L +E ++L +M N + V + Q+ S Sbjct: 117 RSMQQQVDSLLCWKNIELNTQDKWVKLSGELVELTAKEFKVLHKMMQNPERVVTREQLES 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y DE +E N +E I +LRK K+G + + + R LGY Sbjct: 177 TLYAWGDE-IESNAIEVFIYQLRK----KIGTNYIKTIRGLGY 214 >gi|21909780|ref|NP_664048.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|50913656|ref|YP_059628.1| response regulator CsrR [Streptococcus pyogenes MGAS10394] gi|56808741|ref|ZP_00366459.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pyogenes M49 591] gi|71902940|ref|YP_279743.1| response regulator [Streptococcus pyogenes MGAS6180] gi|71910096|ref|YP_281646.1| response regulator [Streptococcus pyogenes MGAS5005] gi|94987913|ref|YP_596014.1| response regulator [Streptococcus pyogenes MGAS9429] gi|94989788|ref|YP_597888.1| response regulator CsrR [Streptococcus pyogenes MGAS10270] gi|94993673|ref|YP_601771.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750] gi|139474380|ref|YP_001129096.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|3599371|gb|AAC64935.1| CsrR [Streptococcus pyogenes] gi|21903965|gb|AAM78851.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|50902730|gb|AAT86445.1| Response regulator CsrR [Streptococcus pyogenes MGAS10394] gi|71802035|gb|AAX71388.1| response regulator [Streptococcus pyogenes MGAS6180] gi|71852878|gb|AAZ50901.1| response regulator [Streptococcus pyogenes MGAS5005] gi|84578944|dbj|BAE72910.1| two-component response regulator mutated protein M3-2 [Streptococcus pyogenes] gi|94541421|gb|ABF31470.1| response regulator [Streptococcus pyogenes MGAS9429] gi|94543296|gb|ABF33344.1| Response regulator CsrR [Streptococcus pyogenes MGAS10270] gi|94547181|gb|ABF37227.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750] gi|134272627|emb|CAM30894.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|190350983|gb|ACE75888.1| CovR [Streptococcus pyogenes] gi|190350986|gb|ACE75890.1| CovR [Streptococcus pyogenes] gi|190350989|gb|ACE75892.1| CovR [Streptococcus pyogenes] gi|190350992|gb|ACE75894.1| CovR [Streptococcus pyogenes] gi|190350995|gb|ACE75896.1| CovR [Streptococcus pyogenes] gi|190350998|gb|ACE75898.1| CovR [Streptococcus pyogenes] gi|190351001|gb|ACE75900.1| CovR [Streptococcus pyogenes] gi|190351004|gb|ACE75902.1| CovR [Streptococcus pyogenes] gi|190351007|gb|ACE75904.1| CovR [Streptococcus pyogenes] gi|190351010|gb|ACE75906.1| CovR [Streptococcus pyogenes] gi|190351013|gb|ACE75908.1| CovR [Streptococcus pyogenes] gi|190351016|gb|ACE75910.1| CovR [Streptococcus pyogenes] gi|190351019|gb|ACE75912.1| CovR [Streptococcus pyogenes] gi|190351022|gb|ACE75914.1| CovR [Streptococcus pyogenes] gi|190351025|gb|ACE75916.1| CovR [Streptococcus pyogenes] gi|190351028|gb|ACE75918.1| CovR [Streptococcus pyogenes] gi|190351031|gb|ACE75920.1| CovR [Streptococcus pyogenes] gi|190351034|gb|ACE75922.1| CovR [Streptococcus pyogenes] gi|190351037|gb|ACE75924.1| CovR [Streptococcus pyogenes] gi|190351040|gb|ACE75926.1| CovR [Streptococcus pyogenes] gi|190351043|gb|ACE75928.1| CovR [Streptococcus pyogenes] gi|190351046|gb|ACE75930.1| CovR [Streptococcus pyogenes] gi|190351049|gb|ACE75932.1| CovR [Streptococcus pyogenes] gi|190351052|gb|ACE75934.1| CovR [Streptococcus pyogenes] gi|190351055|gb|ACE75936.1| CovR [Streptococcus pyogenes] gi|190351058|gb|ACE75938.1| CovR [Streptococcus pyogenes] gi|190351061|gb|ACE75940.1| CovR [Streptococcus pyogenes] gi|254826682|dbj|BAH86623.1| response regulator [Streptococcus pyogenes] gi|254826685|dbj|BAH86625.1| response regulator [Streptococcus pyogenes] gi|254826688|dbj|BAH86627.1| response regulator [Streptococcus pyogenes] gi|254826691|dbj|BAH86629.1| response regulator [Streptococcus pyogenes] Length = 228 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|323494536|ref|ZP_08099641.1| two-component system response regulator QseB [Vibrio brasiliensis LMG 20546] gi|323311263|gb|EGA64422.1| two-component system response regulator QseB [Vibrio brasiliensis LMG 20546] Length = 219 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 12/153 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ +S +L ++ ++G DD + KP E+ AR+ A RR S N + I Sbjct: 73 TPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELTARIRAQLRR--ASGNASPVMQIG 130 Query: 133 VFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 S D R +V QG+ L E +++ Y M N K +++T++ IY FD + N Sbjct: 131 NLSLDTRTSKVMWQGQAISLTALEYKVVAYFMHNPEKVISRTELVEHIYKQDFDR--DSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E I ++RKK+ K+ + + R LGY ++ Sbjct: 189 TIEVFIGRIRKKIAPKV----IKTVRGLGYQLN 217 >gi|320529002|ref|ZP_08030094.1| response regulator receiver domain protein [Selenomonas artemidis F0399] gi|320138632|gb|EFW30522.1| response regulator receiver domain protein [Selenomonas artemidis F0399] Length = 231 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 3/141 (2%) Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDP 140 S++ + D+G DD + KP E+LAR+ A+ RR K+ + E G R+ Sbjct: 89 SVEDRVTGLDAGADDYLVKPFEFSELLARLRALGRRSTQKIQHEVDEIGGFRLNRTANIL 148 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 E G++ L RE ++ + L N G V + I I+GL + V N ++S++ LRKK Sbjct: 149 EKNGKMIQLSPREFQLFDLLAQNIGIVVPRDIILDRIWGL-ESDVSSNNIDSYMKMLRKK 207 Query: 201 LRNKLGFDPVDSKRFLGYSID 221 L + + + R +GY ++ Sbjct: 208 LDAASEGEAIKTIRGVGYKLE 228 >gi|257093580|ref|YP_003167221.1| winged helix family two component heavy metal response transcriptional regulator PhoB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046104|gb|ACV35292.1| two component transcriptional regulator PhoB, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 241 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 20/218 (9%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 LV GY L D + E E L D++ I+ L GK L L +R Sbjct: 27 TLVCGGYQPLCVD---------TAEAAEALLRETLPDLALIDWMLPGKSG--LALTGRLR 75 Query: 69 AHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSN 123 + + +P+I ++ + + G DD + KP +E++ARV A+ RR + Sbjct: 76 SDARTRHLPIILLTARGEETDRVAGLEGGADDYIVKPFSPKELVARVHAVLRRCAPEFVK 135 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 GPI + + + V G+ L E R+L +L+AN G+ ++ Q+ ++G D Sbjct: 136 GTLCAGPIELDTVSHEARVDGQRITLTPTEFRLLRFLIANPGRVYSRQQLLDNVWG--DH 193 Query: 184 A-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E+ V+ HI +LR L V++ R +GY + Sbjct: 194 VYIEDRTVDIHIRRLRVAL-GPAAEQMVETVRGVGYKL 230 >gi|288942284|ref|YP_003444524.1| winged helix family two component transcriptional regulator [Allochromatium vinosum DSM 180] gi|288897656|gb|ADC63492.1| two component transcriptional regulator, winged helix family [Allochromatium vinosum DSM 180] Length = 233 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 79/166 (47%), Gaps = 5/166 (3%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 W++ R D+ ++ L GK L++ R IR SQVP+I + L + G D Sbjct: 45 WVRRE-RPDLILLDLMLPGKDG--LDICREIRTESQVPIIMTTARVEEIDRLLGLELGAD 101 Query: 97 DVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR 155 D V KP RE++ARV A+ RR L A+ GP+ + D + L E Sbjct: 102 DYVCKPYSPRELVARVKAVLRRTLAPEPPAADPGPLHLHRDELRVRAGDDEIELTAVEFA 161 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +LE L G+ ++ ++ IY V + ++SH+ KLR+KL Sbjct: 162 LLETLHGAPGRIFSRDRLMDRIYRDH-RVVSDRTIDSHVKKLRRKL 206 >gi|229591553|ref|YP_002873672.1| two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229363419|emb|CAY50598.1| two-component system response regulator [Pseudomonas fluorescens SBW25] Length = 227 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 7/169 (4%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G +++ + +R S VP+I I+ L D G DD + KP RE++ARV Sbjct: 56 LMLPGRDGMQVCQDLRGFSAVPIIMITARVEEVDRLLGLDLGADDYICKPFSPREVVARV 115 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRD--PEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 AI RR + P R+ D + G L E R+L + G+ ++ Sbjct: 116 KAILRR---GPQLLSSTPARLLIDETQYRASLDGVALDLTPLELRLLSTFARSAGRVFSR 172 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 Q+ +Y V + V+SHI LR+KL G P++S +GY Sbjct: 173 DQLLDKLYS-DHRVVTDRTVDSHIRNLRRKLEQACPGETPIESLYGVGY 220 >gi|126451446|ref|YP_001065854.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|242317008|ref|ZP_04816024.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|126225088|gb|ABN88628.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|242140247|gb|EES26649.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] Length = 260 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 4/153 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 VP+I +S+ ++ F +G DD V KP E LAR+AA+ RR + E G I Sbjct: 77 VPVIVLSNAMQEMQIVEAFSAGADDYVLKPAREAEFLARIAAMMRRKGHAVSGTIEIGGI 136 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVV 190 + + + GE + E ILE + + G V + + + I+G DEAV + + Sbjct: 137 AIDLGWKAVRIDGEPVRMAPIEYEILEMMARHLGSVVQREVLVNRIWGRSIDEAVSRS-L 195 Query: 191 ESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++H+ ++R KL+ + + + S LGY ++W Sbjct: 196 DTHVYRIRHKLKVHGVSNVSLRSVYNLGYRLEW 228 >gi|6002654|gb|AAF00081.1|AF095713_1 response regulator CsrR [Streptococcus pyogenes] Length = 228 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|87119735|ref|ZP_01075632.1| two-component response regulator [Marinomonas sp. MED121] gi|86165211|gb|EAQ66479.1| two-component response regulator [Marinomonas sp. MED121] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 28/209 (13%) Query: 3 VLIDDRALVKDGY---IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59 +L+D LVKD Y + GD+ V E L+S + D+ ++ L GK Sbjct: 18 ILVD--YLVKDNYDVKVLYRGDEAV----------ERILES--KPDLVILDVMLPGKSG- 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + + + +R HS VP++ ++ L G DD V KP RE++ARV AI RR+ Sbjct: 63 -INICKELREHSNVPIMMLTARIDEMDRLVGLKVGADDYVCKPFLPREVVARVNAILRRV 121 Query: 120 KVSNNRAETGPIRVF-SDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRV-AKTQ 172 ++ E V+ S D E G+ L E R+L+ +M +R KRV ++ Sbjct: 122 NRIDDEEEKSSELVYRSITLDLECFKCHANGQYVELTPVEYRLLQ-IMVSRPKRVFSRES 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Y D V + ++SH+ LRKKL Sbjct: 181 LMQKCYK-DDRIVSDRTIDSHVKNLRKKL 208 >gi|69244815|ref|ZP_00603039.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257879132|ref|ZP_05658785.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257882060|ref|ZP_05661713.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257889963|ref|ZP_05669616.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|258615519|ref|ZP_05713289.1| DNA-binding response regulator [Enterococcus faecium DO] gi|260560220|ref|ZP_05832397.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|293563515|ref|ZP_06677963.1| DNA-binding response regulator [Enterococcus faecium E1162] gi|293569037|ref|ZP_06680349.1| DNA-binding response regulator [Enterococcus faecium E1071] gi|294622790|ref|ZP_06701744.1| DNA-binding response regulator [Enterococcus faecium U0317] gi|68196169|gb|EAN10599.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257813360|gb|EEV42118.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257817718|gb|EEV45046.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257826323|gb|EEV52949.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|260073787|gb|EEW62112.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|291588218|gb|EFF20054.1| DNA-binding response regulator [Enterococcus faecium E1071] gi|291597748|gb|EFF28886.1| DNA-binding response regulator [Enterococcus faecium U0317] gi|291604517|gb|EFF34003.1| DNA-binding response regulator [Enterococcus faecium E1162] Length = 224 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 74/140 (52%), Gaps = 7/140 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVS 122 IR S+VP+I IS + + + G DD V K ++A++ A+ RR ++S Sbjct: 67 IREVSKVPIIFISSRNTNMDMIMAMNMGADDFVTKHFQIDVLIAKINALLRRSYNYTELS 126 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + I + D E+ GE+ L + E R+L LM + GK +++ ++ A++ D Sbjct: 127 SEMMSHNGITLNVDNGSMEINGEIIDLSKNEYRLLFILMKHNGKILSREKLLRALWD--D 184 Query: 183 EA-VEENVVESHISKLRKKL 201 E V++N + +I++LR+K+ Sbjct: 185 ERFVDDNTLTVNINRLRRKI 204 >gi|259047168|ref|ZP_05737569.1| response regulator [Granulicatella adiacens ATCC 49175] gi|259036218|gb|EEW37473.1| response regulator [Granulicatella adiacens ATCC 49175] Length = 245 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 8/171 (4%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 LQ++ E AI L+ LE+ R +R Q P+I ++ S+ + D G DD Sbjct: 55 LQTAIDESWDAILLDLMLPEMNGLEVVRRLRQVKQTPVIIMTARDSVMDRVVGLDQGADD 114 Query: 98 VVNKPIHHREILARVAAIYRRLK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 V KP EILAR+ A++RRL+ + + E + + + R GEV L Sbjct: 115 YVVKPFEIEEILARLRALFRRLQMEEQSRNIKQTKVEYRDLVIEVENRVVRRAGEVIDLT 174 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++E +L LM N +++ + ++G +E VE NV++ ++ +R K+ Sbjct: 175 KKEYELLLLLMENIDIVLSREILLKKVWGYKNE-VETNVIDVYVRYIRNKI 224 >gi|255526395|ref|ZP_05393308.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188390|ref|ZP_06856781.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509901|gb|EET86228.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047011|gb|EFG86454.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 222 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 5/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR SQVP+I ++ L + G DD + KP + + +LAR+ ++ +R Sbjct: 63 VCREIRKVSQVPIIVVTSRDDELNELMSINLGADDFITKPYNLQILLARITSVLKR-TYG 121 Query: 123 NNRAETGPIR--VFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N +A+ R +++ E L + E +IL L+ N GK V++ +I ++ Sbjct: 122 NAQADFLRYREIIYNIAASQVEFNNSKIELTKNESKILHILINNSGKIVSRDEIMKCLWQ 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E V++N + ++++LRKKL + + +KR GY Sbjct: 182 Q-AEFVDDNTLTVNVNRLRKKLEDLGAVGYIQTKRGQGY 219 >gi|188587839|ref|YP_001922138.1| response regulator [Clostridium botulinum E3 str. Alaska E43] gi|188498120|gb|ACD51256.1| response regulator [Clostridium botulinum E3 str. Alaska E43] Length = 218 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 1/130 (0%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 +P+I ++ L + SG +D + KP E+LAR+ + RR ++N E + Sbjct: 72 NIPVIFLTAKNGLADKVTGLKSGAEDYIVKPFETVELLARIEIVLRRYSKNSNCIEFENL 131 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 +++ + R + E L +E ++ L+ N+ +++ + I+G ++ E ++ Sbjct: 132 KIYEEERLIKRDDETIDLTLKEFELMVLLVKNKNMALSREYLLEKIWG-YEYMGETRTID 190 Query: 192 SHISKLRKKL 201 +HI KLRKKL Sbjct: 191 NHIQKLRKKL 200 >gi|154250165|ref|YP_001410990.1| two component transcriptional regulator [Fervidobacterium nodosum Rt17-B1] gi|154154101|gb|ABS61333.1| two component transcriptional regulator, winged helix family [Fervidobacterium nodosum Rt17-B1] Length = 239 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 90/205 (43%), Gaps = 22/205 (10%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+GY + +D E+ LQ +DV ++ E R IR Sbjct: 22 TLQKEGYDVIPAEDA-----------EKALQELKEKDVDMFIVDIMLPNMDGFEFVRTIR 70 Query: 69 A---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 A H P+I +S + + G DD + KP RE+LAR+ A++RR+++ Sbjct: 71 AKDKHKLTPVIFLSAKGEEFDKVLGLELGADDYIVKPFSVRELLARIRAVFRRMQLGTVV 130 Query: 126 AETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E P ++ + D + V+G+ L E +L +L N GK ++ + ++ Sbjct: 131 KEEKPKKIVAKDLEIDIDKYEVRVKGKKVSLTPLEFDLLRFLAENEGKVFSRDVLLDKLW 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203 G +D + V+ HI +LR K+ + Sbjct: 191 G-YDYFGDTRTVDVHIRRLRTKIED 214 >gi|62181691|ref|YP_218108.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129324|gb|AAX67027.1| putative transcriptional regulator (OmpR family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716176|gb|EFZ07747.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 270 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +L++D L+ DG A G S++ F + SA D ++ L G G + Sbjct: 54 ILLVEDDTLIGDGIKAGLSKMGFSIDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDI 113 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 114 LREWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ G + + + GE L +E +LE L+ N+G+ + + I +Y Sbjct: 172 GQASSELHHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 231 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D+ V N VE H+ LR+ KLG + + + +GY++ Sbjct: 232 -WDDDVSSNAVEVHVHHLRR----KLGSEFIRTVHGIGYTL 267 >gi|332968994|gb|EGK08036.1| phosphate regulon transcriptional regulatory protein PhoB [Psychrobacter sp. 1501(2011)] Length = 232 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 13/155 (8%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 S++P+I ++ + D+G DD + KP RE+++R+ A+ RR V + P Sbjct: 77 SEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRRSSVLSGEK---P 133 Query: 131 IRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 I DP Q G + E R+L + M++ + +TQ+ ++G + V Sbjct: 134 IEAEGLSLDPVSQRLSADGTPVEIGPTEYRLLAFFMSHPERAYTRTQLLDQVWG-GNVYV 192 Query: 186 EENVVESHISKLRKKLR--NKLGFDPVDSKRFLGY 218 E+ ++ HI +LRK L N GF + + R GY Sbjct: 193 EDRTIDVHIRRLRKVLEPYNYAGF--IQTVRGTGY 225 >gi|325568319|ref|ZP_08144686.1| response regulator [Enterococcus casseliflavus ATCC 12755] gi|325158088|gb|EGC70241.1| response regulator [Enterococcus casseliflavus ATCC 12755] Length = 243 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 13/162 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I IS + + + G DD V KP ++A++ A+ RR S N Sbjct: 86 IREASKVPIIFISSRNTNMDMIMAMNMGADDFVTKPFEIDVLIAKINALLRR---SYNYV 142 Query: 127 ETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E+ + + D + GE L + E R+L LM N GK +++ ++ A++ Sbjct: 143 ESSSETLVHNGLTLNIDNSSMYINGESIDLSKNEYRLLYILMKNHGKILSREKLLRALWD 202 Query: 180 LFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE V++N + +I++LR+K+ +++K GY + Sbjct: 203 --DERFVDDNTLTVNINRLRRKIEQAGMNGYIETKVGQGYIV 242 >gi|294497140|ref|YP_003560840.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294347077|gb|ADE67406.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 230 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 10/168 (5%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IRA+ Q P+I ++ +L + D G +D + KP E+ AR+ ++ R Sbjct: 63 LEVLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARI-RVWLRH 121 Query: 120 KVSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S + AE G + V R+ + E L +E +L Y++ N+ + ++ Q Sbjct: 122 PASTSPAEQETATLQLGNLVVNEKTREVTRENEAIELTPKEYDLLVYMLQNKNQVLSFEQ 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + ++G FD + N+V +I LRKK+ + + R +GY + Sbjct: 182 LLTNVWG-FDYYGDTNIVYVYIRYLRKKIDAPFSTPYIQTVRGVGYML 228 >gi|229828450|ref|ZP_04454519.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM 14600] gi|229793044|gb|EEP29158.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM 14600] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 7/147 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R S VP++ ++ + + G DD + KP + E+ AR+ AI RR++ Sbjct: 62 FEVCRAVREFSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRVR 121 Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S N ++G + + +D R + GE L +E +L L+ + GK ++ + Sbjct: 122 SREAEEDSGNVIKSGDVSMDTDRRSLRIAGEDINLTSKEFDMLLLLVNHPGKVYSRDSLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 I+G D + V+ HI +LR+K+ Sbjct: 182 HTIWG-SDYPGDARTVDVHIRRLREKI 207 >gi|228924395|ref|ZP_04087631.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835257|gb|EEM80662.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 228 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 69/148 (46%), Gaps = 7/148 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + R IR S VP+I ++ TL F+ G DD V KP +LAR + Sbjct: 64 VCRRIRKTSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYSS 123 Query: 119 -LKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + V+N + + I + R V E + E IL YLM N+G + + Q+ + Sbjct: 124 VISVTNEDTLMSSGIHIHFPSRTVTVDKEAKSITHTEFEILTYLMQNQGNVITREQLITK 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204 I+G ++ A ++ + SHI LR KL K Sbjct: 184 IWG-YEFAGDDRTINSHIRNLRHKLGKK 210 >gi|170733982|ref|YP_001765929.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|254247342|ref|ZP_04940663.1| Two-component response regulator yvrH [Burkholderia cenocepacia PC184] gi|124872118|gb|EAY63834.1| Two-component response regulator yvrH [Burkholderia cenocepacia PC184] gi|169817224|gb|ACA91807.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 224 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R +R +P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 64 IDVLRTLRGRGLALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRR- 122 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+E+ G + + + G L RE +LE L+A G ++K+Q+ Sbjct: 123 --QAGRSESLIRHGALTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E + N VE +I LRK KLG D + + R LGY + Sbjct: 181 KMYG-WGEEIGSNTVEVYIHALRK----KLGSDLIRNVRGLGYMV 220 >gi|194429158|ref|ZP_03061687.1| transcriptional regulatory protein CreB [Escherichia coli B171] gi|194412773|gb|EDX29066.1| transcriptional regulatory protein CreB [Escherichia coli B171] gi|323163220|gb|EFZ49052.1| transcriptional regulatory protein creB [Escherichia coli E128010] Length = 229 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 107/225 (47%), Gaps = 14/225 (6%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ V + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSA 176 ++ + IR+ + + +P Q F P R E +L+ L+ + G+ ++ Q+ + Sbjct: 125 FSSPSPV--IRIGYFELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDS 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ + + V++HI LR KLR P+++ R +GYS+ Sbjct: 183 VWEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|126444717|ref|YP_001061957.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126224208|gb|ABN87713.1| DNA-binding response regulator [Burkholderia pseudomallei 668] Length = 220 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 12/162 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + R +P+I ++ +L + D G DD + KP E+LAR+ A+ RR Sbjct: 63 LAALRRRDGALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRR---Q 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 RA+T G +R+ E L +E +L LM G +++ Q +Y Sbjct: 120 AGRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E +E N V+ HI LRK KLG D + + R +GY I Sbjct: 180 S-WGEEIESNAVQVHIHNLRK----KLGHDTILTVRGVGYRI 216 >gi|331082150|ref|ZP_08331277.1| hypothetical protein HMPREF0992_00201 [Lachnospiraceae bacterium 6_1_63FAA] gi|330402944|gb|EGG82509.1| hypothetical protein HMPREF0992_00201 [Lachnospiraceae bacterium 6_1_63FAA] Length = 221 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 16/169 (9%) Query: 40 SSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98 S D+ ++ L G +GE+VL P+I ++P+I +S + G D Sbjct: 42 SKETPDLILLDLMLPGLQGEEVL--PKI----KEIPVIVMSAKADVNHKASLLLEGAADY 95 Query: 99 VNKPIHHREILARVAAIYRRLKVSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRE 153 V KP H +E+LAR+ +L+ NR ET +++ +D V + L R E Sbjct: 96 VTKPFHVKELLARIVV---QLRDRQNRKETSYLFFDDLKLCTDTHIVTVNEKEVKLTRTE 152 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 IL+ LM N + + K+ + I + +E + ++ HIS LRKKLR Sbjct: 153 FAILKLLMKNPAQIITKSALLEQISEDTPDCMESS-LKVHISNLRKKLR 200 >gi|311112222|ref|YP_003983444.1| two component response regulator [Rothia dentocariosa ATCC 17931] gi|310943716|gb|ADP40010.1| two component response regulator [Rothia dentocariosa ATCC 17931] Length = 234 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 12/194 (6%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSG 94 E ++ + E I ++ G E+ R +R A P++ ++ + + + +G Sbjct: 39 EAIEKAENEQPDLIVLDVMMPGMDGFEVTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAG 98 Query: 95 VDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF------P 148 DD V KP E++AR+ AI RR + N + E I D EVF Sbjct: 99 GDDYVTKPFSLDEVIARIRAILRRSR--NAQEEDDAILRVDDLSLNIDTHEVFLGDEEID 156 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGF 207 L E +L YLM N + ++K QI ++ +D + ++VES+IS LR+K+ N+ G Sbjct: 157 LSPTEFNLLHYLMLNANRVLSKAQILDHVWE-YDFNGDSSIVESYISYLRRKIDNNREGH 215 Query: 208 DP-VDSKRFLGYSI 220 +P + +KR +GY I Sbjct: 216 EPLIHTKRGVGYMI 229 >gi|229093928|ref|ZP_04225019.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228689410|gb|EEL43224.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 229 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 8/152 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 64 VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123 Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I V R V L E IL Y M N+G + + Q+ S Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 I+G ++ A ++ V SHI LR KL K + Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|325283532|ref|YP_004256073.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324315341|gb|ADY26456.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 221 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 5/155 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R +S VP+I ++ ++ + G DD + KP H E+LARV R+ +V+ + + Sbjct: 69 LRKNSAVPIIVLTARDTVDEKVRLLGLGADDYIIKPFHPDELLARVKVQLRQ-RVTESLS 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GLFDEAV 185 G + + R +GE L +E IL L+ G+ ++ +I I+ G E Sbjct: 128 -MGDLTLDPQKRLATYKGEELRLSPKEFDILSLLIRQPGRVYSRQEIGQEIWQGRLPEG- 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVV+ H++ LR KLR+ G+ + + R +GY++ Sbjct: 186 -SNVVDVHMANLRAKLRDLDGYGLLRTVRGVGYAL 219 >gi|301052303|ref|YP_003790514.1| response regulator [Bacillus anthracis CI] gi|300374472|gb|ADK03376.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 225 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQHAQIQYHGILWDEAKHFVSVDNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D+ K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220 >gi|182418948|ref|ZP_02950205.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium butyricum 5521] gi|237668366|ref|ZP_04528350.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377231|gb|EDT74799.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium butyricum 5521] gi|237656714|gb|EEP54270.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] Length = 232 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 5/112 (4%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFPL 149 G DD + KP RE+LARV A+ RR N+ E+ ++V + + ++QG L Sbjct: 99 GADDYITKPFSVRELLARVKAVLRRTASFNVEENDIYESKTLKVDFERHEVKIQGNKVDL 158 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +E +L+ L+ N+GK + + + I+G ++ E V+ HI LRKK+ Sbjct: 159 TLKEFELLQILIKNKGKILKREMLLDKIWG-YEYIGETRTVDVHIRYLRKKI 209 >gi|167624826|ref|YP_001675120.1| two component transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167354848|gb|ABZ77461.1| two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 225 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ ++ + S+ L+ F SG DD + KP +RE++AR+ A+ R R E + Sbjct: 74 TPILFLTAFSSIDNKLEGFASGGDDYLAKPFDNRELIARITALSGRKSSHVKRLEIAGLI 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + + + QG+ L +LE LM + V++ + + ++G DE NV+++ Sbjct: 134 MNCEQQQVSYQGQKLELTPACYTLLEVLMRASPEIVSRQSLENKLWG--DEPPSSNVLKA 191 Query: 193 HISKLRKKL 201 HI LR+ L Sbjct: 192 HIYYLRRAL 200 >gi|59713744|ref|YP_206519.1| two component response regulator [Vibrio fischeri ES114] gi|197337772|ref|YP_002158123.1| transcriptional regulator [Vibrio fischeri MJ11] gi|59481992|gb|AAW87631.1| two component response regulator [Vibrio fischeri ES114] gi|197315024|gb|ACH64473.1| transcriptional regulator [Vibrio fischeri MJ11] Length = 218 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 79/150 (52%), Gaps = 7/150 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGP 130 VP+I ++ S++ + DSG +D + KP E+LAR+ A R + +++ G Sbjct: 72 VPVILLTALVSVRDKVTGLDSGANDYLTKPFAEAELLARLRAHLRSPETDEVKSKLVVGN 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + RD GE L R E +L +L +N GK + ++ ++G ++ V Sbjct: 132 LAIDTSTRDVVNSGENVTLTRTEFDLLLFLASNLGKVFTRDELLDQVWG-YNHFPTTRTV 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++HI +LR+K+ +G + +++ R +GY + Sbjct: 191 DTHILQLRQKI---VGIE-IETLRGVGYKM 216 >gi|24379372|ref|NP_721327.1| putative response regulator [Streptococcus mutans UA159] gi|290580626|ref|YP_003485018.1| putative response regulator [Streptococcus mutans NN2025] gi|24377300|gb|AAN58633.1|AE014933_7 putative response regulator [Streptococcus mutans UA159] gi|254997525|dbj|BAH88126.1| putative response regulator [Streptococcus mutans NN2025] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 77/146 (52%), Gaps = 4/146 (2%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE R IRA I ++ ++ + ++G DD + KPI +E+LAR+A++ RRL Sbjct: 62 LEALREIRASGDHTHAIMLTAMSEIEDKVTGLEAGADDYLTKPISLKELLARLASLERRL 121 Query: 120 KVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ T G +++ + V G L +E +++ + M N K ++ +IF ++ Sbjct: 122 DRFTDKVLTFGSVKL-DLAQQEMVSGNSIRLAGKESKLMAFFMLNPNKSLSTKEIFQHVW 180 Query: 179 GLFDE-AVEENVVESHISKLRKKLRN 203 D+ ++E V +IS LR+KL++ Sbjct: 181 AKDDDPEIDEGYVFIYISYLRQKLKS 206 >gi|322388248|ref|ZP_08061852.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321140920|gb|EFX36421.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 225 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 79/159 (49%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP + +LA+V + RR Sbjct: 67 IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDE 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + + D V G+ L + E +IL L + G VA+ + ++ D Sbjct: 127 SLLEYAGVILNTKSMDVHVNGKAISLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +GF +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEEEGLIGF--IETKKGIGYGL 222 >gi|309390235|gb|ADO78115.1| two component transcriptional regulator, winged helix family [Halanaerobium praevalens DSM 2228] Length = 227 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 4/147 (2%) Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E LE + +R + +I +S Q + + G DD + KP +E++AR+ A+ R Sbjct: 60 ENGLEFCQRVRKDFDLAIIFLSAKTEAQAKITGLELGADDYIGKPFSPQEVIARIKAVLR 119 Query: 118 RL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R ++N + G +++ + +GE L +E +L +L N K + + Sbjct: 120 RYDSGAAADNCLQFGALKINKQEHYLKYKGENIDLTPKEFSLLWHLAQNPKKVFRRKNLL 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 A++G +D + V++HI LR+KL Sbjct: 180 KAVWG-YDYFGDVRTVDTHIKSLRQKL 205 >gi|295427202|ref|ZP_06819838.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|295128990|gb|EFG58620.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] Length = 227 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 9/160 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121 R +R S VP++ +S + + + G DD + KP + ++A++ AIYRR+ Sbjct: 67 RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R T V +D +G + L + E ILE L+ + + V++ I +A++ Sbjct: 127 EEKRTLTWQDAVIDLSKDSIQKGDQTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 185 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218 DEA V +N + ++++LRKKL +++G D +++K GY Sbjct: 186 -DEAFVSDNTLTVNVNRLRKKL-SEIGMDSAIETKVGKGY 223 >gi|290352221|dbj|BAI78821.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|262279620|ref|ZP_06057405.1| transcriptional activator protein irlR [Acinetobacter calcoaceticus RUH2202] gi|262259971|gb|EEY78704.1| transcriptional activator protein irlR [Acinetobacter calcoaceticus RUH2202] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 78/158 (49%), Gaps = 4/158 (2%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123 +++R S++P+I ++ + + + G DD + KP + E+LAR+ ++ RR + + Sbjct: 69 QVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQYLQE 128 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182 N +++ G + L + E +L YL+ N+ + V + QI S ++ + FD Sbjct: 129 NELSISDLKMDLVAHKVWRNGNLIELSKTEFNLLRYLLLNKEQIVTRRQIGSEVWNINFD 188 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N ++ + +LR K+ + + R LGY I Sbjct: 189 --TDTNFIDVAVRRLRSKIDEGYELKLIHTIRGLGYKI 224 >gi|239629091|ref|ZP_04672122.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519237|gb|EEQ59103.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 240 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 102/210 (48%), Gaps = 14/210 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V DD+ +V+ I L G+ ++ ++ E E+L+ + + D+ ++ + G Sbjct: 13 ILVCDDDKQIVEAIDIYLTGEGFQVIKAYDGYEALEYLEGN-QVDLLIVDVMMPGLDGIR 71 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 L +R +S +P+I +S + + G DD + KP + E++ARV + RR Sbjct: 72 TTLK--VRENSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLRRYT 129 Query: 119 -LKVSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 L N +AE G +++ D ++ V G+ L E IL L+ N GK + + Sbjct: 130 QLGNMNQQAEGQVFKCGGLQINDDNKEVTVDGDPIKLTPIEYNILLLLVKNAGKVFSIDE 189 Query: 173 IFSAIYGLFDEAV-EENVVESHISKLRKKL 201 I+ I+ +EA+ +N V HI +R+K+ Sbjct: 190 IYEQIWN--EEAIGADNTVAVHIRHIREKI 217 >gi|223044188|ref|ZP_03614226.1| two-component response regulator [Staphylococcus capitis SK14] gi|314934703|ref|ZP_07842062.1| DNA-binding response regulator [Staphylococcus caprae C87] gi|222442449|gb|EEE48556.1| two-component response regulator [Staphylococcus capitis SK14] gi|313652633|gb|EFS16396.1| DNA-binding response regulator [Staphylococcus caprae C87] Length = 221 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 +R S VP++ IS + G DD + KP + +A++ A+ RR L VSN Sbjct: 66 MRKESNVPIMFISSRTDNMDQIMAIQMGGDDFIEKPFNLSLTVAKIQALLRRTYDLSVSN 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + ++ D + L E +IL+ L N GK V++T + + + Sbjct: 126 DELDVKGCKLILDEAKLVKDDDAVQLSLTELQILKMLFQNEGKYVSRTALIEKCWE-SEN 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + D +++K+ +GY + Sbjct: 185 FIDDNTLAVNMTRLRKKLLSIGVDDFIETKKNVGYRV 221 >gi|183599669|ref|ZP_02961162.1| hypothetical protein PROSTU_03158 [Providencia stuartii ATCC 25827] gi|188021923|gb|EDU59963.1| hypothetical protein PROSTU_03158 [Providencia stuartii ATCC 25827] Length = 222 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 5/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ + ++P++ ++ + + ++G DD + KP E+ AR+ A+ RR + Sbjct: 63 LAQMRKRGQEIPVLLLTANSDVSDRVKGLNAGADDYLTKPFDLAELEARIRALLRRSQGQ 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N + + + V E L RE +L L RG+ V+KTQ+F ++ L D Sbjct: 123 VNEPQRFGSLCYHEEGYFLVDKEPLALTPREFAVLNTLFHRRGRPVSKTQLFEQVFSLSD 182 Query: 183 EAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 EA ++ +E ++ ++RKKL G D +++ R LGY ++ Sbjct: 183 EANLQS-IELYVHRVRKKLT---GTDVNINTLRGLGYRLE 218 >gi|74316154|ref|YP_313894.1| two component transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74055649|gb|AAZ96089.1| Two component Transcriptional regulator, Winged helix family [Thiobacillus denitrificans ATCC 25259] Length = 220 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 102/230 (44%), Gaps = 31/230 (13%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV- 60 +L++D AL+ DG A G+S GF +WL R+ +A+ A + V Sbjct: 3 ILLVEDDALLGDGLKA-----GLSQSGFAV----DWL----RDGEAAVTALTTERFAAVV 49 Query: 61 --LELPR--------IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109 L LPR +R P++ ++ L+ + D G DD V KP E+ Sbjct: 50 LDLGLPRRDGLSVLQWLRGRGDPTPVLVLTARDQLEDKVRGLDLGADDYVLKPFDLDEVA 109 Query: 110 ARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 AR+ A+ RR S + G I + R +G+ L RE +L L+ + G + Sbjct: 110 ARLRALMRRAHGKSAPLLKLGDIELDPAARSVTQRGQPVDLTGREFDLLHVLLQSSGHVL 169 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + +Y +DE V N +E H+ LR+KL N D + + R +GY Sbjct: 170 TRRMLEEQLY-TWDEGVGSNALEVHVHHLRRKLGN----DVIRTVRGVGY 214 >gi|55821339|ref|YP_139781.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55823251|ref|YP_141692.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|55737324|gb|AAV60966.1| response regulator (homolog to RR01Spn & Sth) [Streptococcus thermophilus LMG 18311] gi|55739236|gb|AAV62877.1| response regulator (homolog to RR01Spn & Sth) [Streptococcus thermophilus CNRZ1066] Length = 226 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP +LA++ + RR Sbjct: 67 IRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQ 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N E + + D QGEV L + E +IL+ L + G V++ + ++ D Sbjct: 127 NLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQILQVLFDHAGNIVSREDLMKELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL D +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGL 222 >gi|55820412|ref|YP_138854.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55822294|ref|YP_140735.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|55736397|gb|AAV60039.1| response regulator (homolog to csrR/covR Spy) [Streptococcus thermophilus LMG 18311] gi|55738279|gb|AAV61920.1| response regulator (homolog to csrR/covR Spy) [Streptococcus thermophilus CNRZ1066] Length = 229 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 9/166 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ A +RR + Sbjct: 63 EVTRRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDI 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-------EVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + D + +VQ EV PL +RE +L L++N + + + ++ Sbjct: 123 EATKKAPAKASTYRDLK-LDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D+ +E NVV+ +I LR K+ + + R +GY I Sbjct: 182 LQVWK-YDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226 >gi|313902699|ref|ZP_07836097.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313466996|gb|EFR62512.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 235 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 106/231 (45%), Gaps = 20/231 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIG- 55 +++DD A ++ + LF + GF E E+ ++ + R D+ ++ L G Sbjct: 3 ILVVDDEAPMR-ALLRLF----LEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLPGI 57 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G V RI+R S VPLI ++ ++ + ++G DD + KP E+LAR+ A+ Sbjct: 58 DGWAVC---RILRRESDVPLIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAV 114 Query: 116 YRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR R GP+ + R+ G L +E +L L + G+ + + Sbjct: 115 LRRTPRVEGRPADRVIAGPLLIDVPAREAYCHGRRLNLTPKEFDLLALLARHPGQVLDRA 174 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 +I ++G +D + V++H+ LR KL +++ R +GY ++ Sbjct: 175 RIIERVWG-WDYDGDVRTVDTHVKTLRAKLVAAGCSRHLIETVRSIGYRLN 224 >gi|303242341|ref|ZP_07328826.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590104|gb|EFL59867.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 222 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP+I IS + + G DD ++KP + A+V A+ RR Sbjct: 67 IRKLSKVPIIFISSASDNMNIVMAVNMGGDDFISKPFDLSVLTAKVQAMLRRTYDFAGQT 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N E + + + + L + E +IL+ L+ N+ K V++ I + ++ D Sbjct: 127 NLLEHKGVILNTSDTTLSYNDKKIDLTKNEYKILQVLIENKDKVVSRDTIMTKLWET-DS 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + D + +K+ +GY + Sbjct: 186 FIDDNTLTVNVTRLRKKLEDAGLCDFISTKKGIGYMV 222 >gi|299532441|ref|ZP_07045833.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|298719679|gb|EFI60644.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 238 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 15/223 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + D D+G LE + ++ L R A+ L+ G L Sbjct: 7 ILLVEDDAHIADLLSLHLRDEG--LEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGL 64 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R RA ++ P+I IS S + + G DD + KP E++ARV A+ RR+ Sbjct: 65 EICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVD 124 Query: 121 --VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + R E+G + V DP + G L RE +L + GK ++ + Sbjct: 125 ALAQSARLESGSLSVNGLVMDPVAREASLSGRRLDLTPREFDLLYFFARQSGKVFSRMDL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 +A++G E E+ V +HI++LR K+ +P R L Sbjct: 185 LNAVWGYQHEGY-EHTVNTHINRLRAKVE----LNPAQPTRIL 222 >gi|295093812|emb|CBK82903.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 229 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 7/141 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL------K 120 IR S VP+I ++ + + G DD V KP + E+LARV + RR + Sbjct: 67 IRESSNVPVIMLTAKSEDTDKVLGLEVGADDYVTKPFNPVELLARVKSQLRRYMQLGGGE 126 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ G I + + + GE+ PL E IL+ LM N GK + +I+ A++ Sbjct: 127 TPKDKLVIGGIELDDKSKQVTLDGELMPLTPTEYDILKLLMQNVGKVFSTKEIYKAVWK- 185 Query: 181 FDEAVEENVVESHISKLRKKL 201 D E V HI LR+K+ Sbjct: 186 EDPMGAEGSVAVHIRHLREKI 206 >gi|290352217|dbj|BAI78819.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|290352167|dbj|BAI78794.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|290352159|dbj|BAI78790.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|257066585|ref|YP_003152841.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] gi|256798465|gb|ACV29120.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] Length = 226 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 8/157 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP+I IS + + + G DD + KPI A++ A+ RR K+ + Sbjct: 66 IRKKSKVPIIFISSHTESMDIIQAMNFGADDYITKPIDIAVTRAKIQAVLRRAYDYKIDS 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N E + + E L R E ILE L ++G V + I + DE Sbjct: 126 NILEFDNVYLDLSKASISFGEETTILTRTELMILESLFESKGDIVMREDIIEKCWQ--DE 183 Query: 184 A-VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +++N + +I++LRKKLR ++G D + +K+ +GY Sbjct: 184 NFIDDNTLAVNITRLRKKLR-QIGKDNFIKTKKGMGY 219 >gi|253580747|ref|ZP_04858011.1| two-component system response regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251848118|gb|EES76084.1| two-component system response regulator [Ruminococcus sp. 5_1_39BFAA] Length = 224 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 72/143 (50%), Gaps = 1/143 (0%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + +R++S +P+I ++ + + + GV+D ++KP + AR+ I + K Sbjct: 63 FELCKEVRSYSNIPIIMLTARDTEMDEIKALELGVNDYLSKPFSLGVLKARMKRILQE-K 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + TG + + +G L + E R+L YL+ N+ ++K QI I+ Sbjct: 122 SESTKIVTGSLSIDQSTCKVYKRGSEISLSKLEYRLLVYLIENKNHILSKEQILEKIWDS 181 Query: 181 FDEAVEENVVESHISKLRKKLRN 203 + V+ N V +IS+LR K+ + Sbjct: 182 DGKYVDNNTVSVNISRLRTKIED 204 >gi|302879699|ref|YP_003848263.1| two component transcriptional regulator PhoB, winged helix family [Gallionella capsiferriformans ES-2] gi|302582488|gb|ADL56499.1| two component transcriptional regulator PhoB, winged helix family [Gallionella capsiferriformans ES-2] Length = 229 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 5/154 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130 VP+I ++ + + +SG DD + KP RE++AR+ A+ RR +S ++ +G Sbjct: 77 VPIIMLTARGDERDKVLGLESGADDYITKPFSPRELMARIRAVMRRHIPTLSEDKVASGG 136 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + +G L E R+L + M + + ++TQ+ ++G VEE V Sbjct: 137 LELSPTSHRVTAKGLTIELGPTEFRLLHFFMTHAERVYSRTQLLDQVWGT-QVFVEERTV 195 Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223 + HI +LR L G D + + R GY N Sbjct: 196 DVHIRRLRASLEAS-GLDGLIQTVRGSGYRFSTN 228 >gi|228899004|ref|ZP_04063278.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL 4222] gi|228963367|ref|ZP_04124529.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar sotto str. T04001] gi|228796327|gb|EEM43773.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar sotto str. T04001] gi|228860638|gb|EEN05024.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL 4222] Length = 237 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 15/162 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 63 IEVCKKLRYKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V S+N A+ F + E L +E +L++ +N G+ KTQ Sbjct: 123 VLGSSNTAQQKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213 +F ++ D +E +N V HI KLRKK+ DP + K Sbjct: 183 LFQNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218 >gi|225573642|ref|ZP_03782397.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM 10507] gi|225039010|gb|EEG49256.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM 10507] Length = 233 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 21/171 (12%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IRA S +P+I IS ++ D+G DD + KP E+LAR+ RRL Sbjct: 63 VEIIRKIRAWSNMPIIVISARSEDSDKIEALDAGADDYLTKPFSVEELLARLRVTQRRLA 122 Query: 121 VSNNRAETGPIRVFSDG--RDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQ 172 + NR++ VF++G + V G V+ L E ++L L N GK + T Sbjct: 123 MMQNRSQVEE-SVFTNGSLKIDYVAGCVYLNENELHLTPIEYKLLCLLSQNIGKVLTHTY 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFLGYSI 220 I AI+G + E+ I+ LR LR K+ P DS +++ I Sbjct: 182 ITQAIWG--------SSWENDIASLRVFMATLRKKIESAP-DSPQYIQTHI 223 >gi|331698892|ref|YP_004335131.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953581|gb|AEA27278.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 224 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 7/134 (5%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---TGPIRVFSDGRDPEVQGEVF 147 + G DD V KP RE++ARV + RR R E G + V D R Sbjct: 93 LEMGADDYVTKPFSPRELVARVRTVLRRSGTGAPREEVLRVGEVEVQVDRRRVRAGTTEV 152 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E +L +LM G+ ++ Q+ SA++G + + V+ H+++LR KL + Sbjct: 153 ALTATEFALLAHLMRAPGRVYSRDQLLSAVWG-YTASSGARTVDVHVAQLRAKLGDA--- 208 Query: 208 DPVDSKRFLGYSID 221 P+ + R +GY+ D Sbjct: 209 SPIRTVRGVGYAAD 222 >gi|294498951|ref|YP_003562651.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294348888|gb|ADE69217.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 226 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 6/142 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +P+I +S + +G DD + KP + E++ARV + RR K N RA Sbjct: 68 IREEKNMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIRRYKKYNQRA 127 Query: 127 E-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 E G + + R V+G+ L +E ILE L ++G ++ +I+ A++ Sbjct: 128 EHEIIQIGDLEINRSTRLVFVRGQEIRLTPKEFDILELLARHKGTVMSMGKIYEAVWQ-A 186 Query: 182 DEAVEENVVESHISKLRKKLRN 203 D ++ V HI+K+R+K+ + Sbjct: 187 DALKSDSTVMVHITKIREKIED 208 >gi|264678857|ref|YP_003278764.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|262209370|gb|ACY33468.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] Length = 238 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 15/223 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + D D+G LE + ++ L R A+ L+ G L Sbjct: 7 ILLVEDDAHIADLLSLHLRDEG--LEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGL 64 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R RA ++ P+I IS S + + G DD + KP E++ARV A+ RR+ Sbjct: 65 EICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVD 124 Query: 121 --VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + R E+G + V DP + G L RE +L + GK ++ + Sbjct: 125 ALAQSARLESGSLSVNGLVMDPVAREASLSGRRLDLTPREFDLLYFFARQSGKVFSRMDL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 +A++G E E+ V +HI++LR K+ +P R L Sbjct: 185 LNAVWGYQHEGY-EHTVNTHINRLRAKVE----LNPAQPTRIL 222 >gi|300691429|ref|YP_003752424.1| response regulator, cheY family [Ralstonia solanacearum PSI07] gi|299078489|emb|CBJ51142.1| putative response regulator, CheY family [Ralstonia solanacearum PSI07] Length = 230 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 68/130 (52%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPI 131 +P++ ++ + +++ + + G DD + KP E+ AR A+ RR + + GP+ Sbjct: 73 LPVMILTAHGAVEERVRGLNLGADDYLTKPFDLTEVEARARALIRRSHGHERTQLQCGPL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 ++GE L RER +LE L+ G+ V K I I+G+ +E+V + +E Sbjct: 133 HYDGTSGAFTLRGEPLALTGRERAVLEVLVLRDGRAVNKAAISEKIFGI-NESVNADAIE 191 Query: 192 SHISKLRKKL 201 ++ +LRKKL Sbjct: 192 IYVHRLRKKL 201 >gi|266619280|ref|ZP_06112215.1| transcriptional regulatory protein CutR [Clostridium hathewayi DSM 13479] gi|288869197|gb|EFD01496.1| transcriptional regulatory protein CutR [Clostridium hathewayi DSM 13479] Length = 227 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 66/134 (49%), Gaps = 6/134 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPL 149 DSG D + KP H E+ AR+ + RR + A T G + + S+ + QG Sbjct: 91 LDSGASDYLTKPFHFEELEARIRMLLRRSFIQTEAALTRGGLCLDSNLKTASFQGRPLEF 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRNKLGF 207 RE ILEYLM + G+ V+ ++ ++ D + N V+ +IS +R+KL+ Sbjct: 151 SMREFSILEYLMIHMGRPVSAEELLEHVW---DSEADPFSNQVKVYISVIRRKLQAVTDE 207 Query: 208 DPVDSKRFLGYSID 221 + + S R GY ID Sbjct: 208 EIIRSIRGAGYLID 221 >gi|255523201|ref|ZP_05390172.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186167|ref|ZP_06854572.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255513069|gb|EET89338.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049435|gb|EFG88864.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 231 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 10/149 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 EL + IR Q+P+I IS + ++ + G DD + KP E+ ARV + RR +K Sbjct: 65 ELIKNIRKTKQMPVIVISAKIDKKDKIELLNLGADDYITKPFDIEEVCARVYSNLRRYMK 124 Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 SNN + D ++ V G+ RE ILE L+ + K +K +F Sbjct: 125 FSNNNVSVNENLTYKDIVLNKETKEVCVNGKNITFTAREFEILELLLTHPKKVFSKANLF 184 Query: 175 SAIYGLFDEAV-EENVVESHISKLRKKLR 202 +++G +E + ++N V H+S LR KL+ Sbjct: 185 ESVWG--EEYLGDDNTVNVHMSNLRSKLQ 211 >gi|255526636|ref|ZP_05393542.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186096|ref|ZP_06854501.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509669|gb|EET86003.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049364|gb|EFG88793.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 225 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 77/152 (50%), Gaps = 3/152 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 ++ + +P++ ++ + F SG DD + KP E+L R+ A+ RR K S + Sbjct: 69 KSGNMIPILMLTAKQLTTDKIRGFQSGTDDYMTKPADEEELLWRIKALLRRAKEASEHIL 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + G + + SD E LP++E ++L L++ + Q+ I+G+ E+V Sbjct: 129 KIGEVILDSDAFTVTRIDEKQTLPKKEFQLLYRLLSTPDYIFTRLQLMDEIWGMDSESV- 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + V HI++LRK+ + FD V + R +GY Sbjct: 188 DTTVNVHITRLRKRFSSYPEFDIV-AIRGVGY 218 >gi|291302594|ref|YP_003513872.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571814|gb|ADD44779.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 236 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 16/169 (9%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 E+ R IR+ S + P++ ++ +L+ + G DD V KP E++AR+ A+ RR Sbjct: 71 FEVARRIRSGSDRTPIVYLTARDALEDKVRGLTLGGDDYVTKPFSLEEVIARIRAVLRR- 129 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQI 173 S A P ++D E EV+ L E ++L Y M N G+ ++K QI Sbjct: 130 --SKGDAPPPPRLQYADLELDEETHEVWRGGNSVQLSPTEFKLLRYFMVNAGRVLSKAQI 187 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 ++ +D ++ +VES++S LR+K+ N +P + + R +GY + Sbjct: 188 LDHVW-RYDFRGDDGIVESYVSYLRRKIDNT---EPRLIQTLRGIGYVL 232 >gi|167755010|ref|ZP_02427137.1| hypothetical protein CLORAM_00514 [Clostridium ramosum DSM 1402] gi|237735265|ref|ZP_04565746.1| two-component system transcriptional regulator [Mollicutes bacterium D7] gi|167705060|gb|EDS19639.1| hypothetical protein CLORAM_00514 [Clostridium ramosum DSM 1402] gi|229381010|gb|EEO31101.1| two-component system transcriptional regulator [Coprobacillus sp. D7] Length = 226 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 3/153 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRA 126 R +++P++ +S F G DD + KP E+L RV A+ RR K+ N +R Sbjct: 69 RVQNELPILMVSAKQLPADRNKGFIVGTDDFMTKPFDEEELLLRVKALLRRAKIVNEHRI 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + D + + LP++E +L L++ GK + Q+ I+G+ D Sbjct: 129 IIGEVILDYDSLTVKRKNTCQELPQKEFMLLYKLLSYPGKIFTRIQLMDEIWGV-DSDTG 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 V H+++LRK+ + F+ + S R LGY Sbjct: 188 WETVTVHVARLRKRFEDWPEFEII-SVRGLGYK 219 >gi|166999354|ref|ZP_02265195.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|243064651|gb|EES46837.1| DNA-binding response regulator [Burkholderia mallei PRL-20] Length = 220 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 12/162 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + R +P+I ++ +L + D G DD + KP E+LAR+ A+ RR Sbjct: 63 LAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRR---Q 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 RA+T G +R+ E L +E +L LM G +++ Q +Y Sbjct: 120 AGRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E +E N V+ HI LRK KLG D + + R +GY I Sbjct: 180 S-WGEEIESNAVQVHIHNLRK----KLGHDTILTVRGVGYRI 216 >gi|29346892|ref|NP_810395.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|298386461|ref|ZP_06996017.1| DNA-binding response regulator [Bacteroides sp. 1_1_14] gi|29338790|gb|AAO76589.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|298260838|gb|EFI03706.1| DNA-binding response regulator [Bacteroides sp. 1_1_14] Length = 229 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 78/153 (50%), Gaps = 12/153 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G K+ + + + ++VP+I I+ + T+ F+ G DD ++KP RE++ARV A+ Sbjct: 61 GFKMANMLKKDKKTARVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVL 120 Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 RR + E P R+ + + E L ++E IL L+ N+G+ + Sbjct: 121 RR--TATMETEKAPERLTYQSLVIDITKKKVSIDDEEVQLTKKEFEILLLLVQNKGRVFS 178 Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201 + I + I+ DE V + ++ +I++LRKK+ Sbjct: 179 REDILARIWS--DEVYVLDRTIDVNITRLRKKI 209 >gi|28897986|ref|NP_797591.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260364229|ref|ZP_05776932.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030] gi|260877141|ref|ZP_05889496.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034] gi|260895801|ref|ZP_05904297.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466] gi|260902062|ref|ZP_05910457.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037] gi|28806200|dbj|BAC59475.1| DNA-binding response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|308088349|gb|EFO38044.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466] gi|308093914|gb|EFO43609.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034] gi|308109081|gb|EFO46621.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037] gi|308111902|gb|EFO49442.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030] gi|328473058|gb|EGF43906.1| DNA-binding response regulator [Vibrio parahaemolyticus 10329] Length = 219 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 22/217 (10%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L +G++ DG+ + EEW + ++ + KG I Sbjct: 19 TLENNGWVPELSQDGI--DALYRATSEEWDAIVLDLGLPKLDGLTVLKG--------IRD 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 + P++ +S +L ++ ++G DD + KP E++AR+ A RR S N + Sbjct: 69 ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARLRAQLRR--ASGNASPV 126 Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 I S D R +V QG+ L E +++ Y M N K +++T++ IY FD Sbjct: 127 MQIGDLSLDTRTSKVMWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEHIYKQDFDR- 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + N +E I ++RKK+ K+ + + R LGY ++ Sbjct: 186 -DSNTIEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217 >gi|116750082|ref|YP_846769.1| two component transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116699146|gb|ABK18334.1| two component transcriptional regulator, winged helix family [Syntrophobacter fumaroxidans MPOB] Length = 226 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 3/165 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +EL + IR P+I ++ + + G DD V KP RE+ ARV A+ RR Sbjct: 62 MELCKEIRKSHSTPVIFLTARTDEVDRVVGLEIGADDYVTKPFSPRELSARVRAVLRRTH 121 Query: 121 VSNNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V ++ A T + +D R G L R E IL+ + G ++ Q+ ++ Sbjct: 122 VRDHCAPTPHVFEVNDSKRRIAYHGRTLDLSRYEYEILKTFIRRPGHIYSRDQLMELVWE 181 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + +++ V++HI +R KLR DP+ + R +GYS+ N Sbjct: 182 QPETSLDRT-VDAHIKNIRAKLRVIAPESDPIVTHRGMGYSLREN 225 >gi|290352269|dbj|BAI78845.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|312115807|ref|YP_004013403.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311220936|gb|ADP72304.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 226 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 5/151 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ +S ++ + SG DD + KP E++ARV A+ RR Sbjct: 73 TPVLILSALGAVDDRVKGLRSGGDDYLPKPYSLVELVARVEALTRRGPTERAVTTYAVGD 132 Query: 133 VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189 + D +V GE L RE R+LEYLM + G+ V +T + ++ FD + NV Sbjct: 133 LVLDRLSHKVSRGGETIVLQPREYRLLEYLMKHAGQVVTRTMLLENVWDYHFDP--QTNV 190 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ HIS+LR K+ G +++ R GY I Sbjct: 191 IDVHISRLRSKIDKGQGKPLLETVRGAGYMI 221 >gi|260550899|ref|ZP_05825105.1| two-component system response regulator protein [Acinetobacter sp. RUH2624] gi|260406026|gb|EEW99512.1| two-component system response regulator protein [Acinetobacter sp. RUH2624] Length = 220 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 8/165 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GEKVL R VP+I I+ S+ ++ D G +D + KP E+ AR+ A Sbjct: 59 GEKVLTTIRY--KQKNVPVIFITARDSIHDRVEGLDLGANDYLIKPFSLEELSARIRAQL 116 Query: 117 RRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R +S G + + + + + G L +E +IL LM + + + Q+ Sbjct: 117 RNQTLSQQSILIWGDLHLDTQAKVVSLAGNPIDLTAKEFQILRKLMVHPEHIITRDQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A+Y DE +E N +E I +LRK K+G + + R LGY + Sbjct: 177 ALYAWGDE-IESNAIEVFIYQLRK----KIGSSSIKTIRGLGYRM 216 >gi|302527275|ref|ZP_07279617.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302436170|gb|EFL07986.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 226 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 4/201 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D AL+ + D G ++ S E + S DV ++ L G L Sbjct: 5 VLLVEDDALISEALSLALADQGCAVTQAASGEDALAMLESVSVDVVLLDLML--PGMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + +R +P+I I+ Q + ++G DD V KP+ E+ AR+ A+ RR Sbjct: 63 SVCHELRVRGDLPVIIITARADSQDVIAGLEAGADDYVTKPLVAGELAARIRALLRRAAP 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V + G + + + G L R E R+L L A G+ V + Q+ I+G Sbjct: 123 VRRCCLQVGDLLLSTHDETVSRHGVQILLTRTEFRLLAELAAAEGEVVTREQLLHRIWG- 181 Query: 181 FDEAVEENVVESHISKLRKKL 201 D +++ HI +LR+K+ Sbjct: 182 RDYFGGTRLLDVHIRRLRRKV 202 >gi|210621484|ref|ZP_03292655.1| hypothetical protein CLOHIR_00598 [Clostridium hiranonis DSM 13275] gi|210154741|gb|EEA85747.1| hypothetical protein CLOHIR_00598 [Clostridium hiranonis DSM 13275] Length = 234 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/212 (23%), Positives = 98/212 (46%), Gaps = 26/212 (12%) Query: 6 DDRALVKDGYIALFGDDGVS------LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59 DD+ L K I L ++ S +E N LE +E++ + ++ F + Sbjct: 9 DDKELCKLLQITLKSENIDSKICFSGIEAINELEKDEYIMLILDVMMPGLDGF------R 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE I+R +S +P++ ++ + + G DD + KP + E LARV ++ RR Sbjct: 63 TLE---IVRENSDIPVLMLTAKDDTSSKVKGLRLGADDYITKPFNTEEFLARVDSLIRRY 119 Query: 120 KVSNNRAETGP----------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 ++N +++ + + D + + L +E +L + N+G+ + Sbjct: 120 NMNNKQSKNTEDYRESLYFEGLEILPDEYSVKTDKGMIELLPKEFDVLYFCAINQGRILT 179 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 K QI+ A++ A ++N + S IS++RKK+ Sbjct: 180 KKQIYEAVWNE-SYAFDDNNIMSVISRIRKKI 210 >gi|261407257|ref|YP_003243498.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283720|gb|ACX65691.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 224 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 4/164 (2%) Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E LE+ IR P++ ++ + F +G DD + KP RE+ ARV A R Sbjct: 57 ESGLEICERIRGFVSCPILFLTARIEDADKIAGFRAGGDDYILKPFSIRELGARVEAHLR 116 Query: 118 RLKVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R + +A + + R+ Q + PL ++E I+E L N G K +I+ Sbjct: 117 REQRVPTKASVRFNHDLVINYTARELYFQDKRIPLAKKEFGIIELLSMNPGMVFEKERIY 176 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I+GL DE + +V+ HI ++R K + D +++ +GY Sbjct: 177 EKIWGL-DEEGDSSVIAEHIRRIRNKFKEYGCSDRIETVWGVGY 219 >gi|170749884|ref|YP_001756144.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170656406|gb|ACB25461.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 249 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 8/169 (4%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L R +R + P + +S + + +G DD + KP E+LAR A+ RR Sbjct: 78 LSLIRSLREQNVATPTLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEALARRQ 137 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S ET G + + G PL RE R+LEYLM + G+ V +T + Sbjct: 138 AGSGAAEETRYRIGDLELDRLSHRVTRAGREIPLQPREFRLLEYLMRHAGQVVTRTMLLE 197 Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ FD + NV++ H+S+LR KL + + R GY + ++ Sbjct: 198 HVWDYHFDP--QTNVIDVHVSRLRSKLDKGFPSPIIHTVRGAGYVLRFD 244 >gi|29376397|ref|NP_815551.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|69243908|ref|ZP_00602486.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|126699488|ref|YP_001088385.1| two-component system response regulator [Clostridium difficile 630] gi|227519207|ref|ZP_03949256.1| response regulator [Enterococcus faecalis TX0104] gi|227553677|ref|ZP_03983726.1| response regulator [Enterococcus faecalis HH22] gi|229545549|ref|ZP_04434274.1| response regulator [Enterococcus faecalis TX1322] gi|255975586|ref|ZP_05426172.1| two-component system [Enterococcus faecalis T2] gi|256619346|ref|ZP_05476192.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200] gi|256853387|ref|ZP_05558757.1| two-component system [Enterococcus faecalis T8] gi|256961640|ref|ZP_05565811.1| two-component system response regulator [Enterococcus faecalis Merz96] gi|256964854|ref|ZP_05569025.1| two-component system response regulator [Enterococcus faecalis HIP11704] gi|257090159|ref|ZP_05584520.1| two component system response regulator [Enterococcus faecalis CH188] gi|257880523|ref|ZP_05660176.1| two-component system response regulator [Enterococcus faecium 1,230,933] gi|257883531|ref|ZP_05663184.1| two-component system response regulator [Enterococcus faecium 1,231,502] gi|257891929|ref|ZP_05671582.1| two-component system response regulator [Enterococcus faecium 1,231,410] gi|257894764|ref|ZP_05674417.1| two-component system response regulator [Enterococcus faecium 1,231,408] gi|258616835|ref|ZP_05714605.1| two-component system, response regulator [Enterococcus faecium DO] gi|260558207|ref|ZP_05830404.1| two-component system [Enterococcus faecium C68] gi|261206583|ref|ZP_05921282.1| two-component system [Enterococcus faecium TC 6] gi|293382632|ref|ZP_06628562.1| DNA-binding response regulator VncR [Enterococcus faecalis R712] gi|293386651|ref|ZP_06631226.1| DNA-binding response regulator VncR [Enterococcus faecalis S613] gi|294614552|ref|ZP_06694459.1| DNA-binding response regulator [Enterococcus faecium E1636] gi|294617616|ref|ZP_06697245.1| DNA-binding response regulator [Enterococcus faecium E1679] gi|294621925|ref|ZP_06701075.1| DNA-binding response regulator [Enterococcus faecium U0317] gi|307272940|ref|ZP_07554187.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307275695|ref|ZP_07556835.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307277788|ref|ZP_07558873.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|307291718|ref|ZP_07571590.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|312904764|ref|ZP_07763912.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|312908420|ref|ZP_07767383.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312978981|ref|ZP_07790703.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|314996395|ref|ZP_07861440.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|29343860|gb|AAO81621.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|44934006|gb|AAS49400.1| response regulator [Enterococcus faecalis] gi|68196634|gb|EAN11059.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|115250925|emb|CAJ68751.1| Two-component response regulator; Tn1549-like,CTn5-Orf36 [Clostridium difficile] gi|227073346|gb|EEI11309.1| response regulator [Enterococcus faecalis TX0104] gi|227177188|gb|EEI58160.1| response regulator [Enterococcus faecalis HH22] gi|229309334|gb|EEN75321.1| response regulator [Enterococcus faecalis TX1322] gi|255968458|gb|EET99080.1| two-component system [Enterococcus faecalis T2] gi|256598873|gb|EEU18049.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200] gi|256711846|gb|EEU26884.1| two-component system [Enterococcus faecalis T8] gi|256952136|gb|EEU68768.1| two-component system response regulator [Enterococcus faecalis Merz96] gi|256955350|gb|EEU71982.1| two-component system response regulator [Enterococcus faecalis HIP11704] gi|256998971|gb|EEU85491.1| two component system response regulator [Enterococcus faecalis CH188] gi|257814751|gb|EEV43509.1| two-component system response regulator [Enterococcus faecium 1,230,933] gi|257819189|gb|EEV46517.1| two-component system response regulator [Enterococcus faecium 1,231,502] gi|257828289|gb|EEV54915.1| two-component system response regulator [Enterococcus faecium 1,231,410] gi|257831143|gb|EEV57750.1| two-component system response regulator [Enterococcus faecium 1,231,408] gi|260075789|gb|EEW64094.1| two-component system [Enterococcus faecium C68] gi|260079200|gb|EEW66892.1| two-component system [Enterococcus faecium TC 6] gi|291079992|gb|EFE17356.1| DNA-binding response regulator VncR [Enterococcus faecalis R712] gi|291083903|gb|EFE20866.1| DNA-binding response regulator VncR [Enterococcus faecalis S613] gi|291592586|gb|EFF24188.1| DNA-binding response regulator [Enterococcus faecium E1636] gi|291596125|gb|EFF27389.1| DNA-binding response regulator [Enterococcus faecium E1679] gi|291598499|gb|EFF29566.1| DNA-binding response regulator [Enterococcus faecium U0317] gi|306497170|gb|EFM66715.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306505528|gb|EFM74713.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306507571|gb|EFM76701.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|306510554|gb|EFM79577.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|309386143|gb|ADO67011.1| DNA-binding response regulator [Enterococcus faecium] gi|310625640|gb|EFQ08923.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310631917|gb|EFQ15200.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311288220|gb|EFQ66776.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|313589447|gb|EFR68292.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|315029020|gb|EFT40952.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] gi|315033219|gb|EFT45151.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315144701|gb|EFT88717.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315161471|gb|EFU05488.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315574447|gb|EFU86638.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315577928|gb|EFU90119.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|315580786|gb|EFU92977.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|323481010|gb|ADX80449.1| response regulator [Enterococcus faecalis 62] Length = 217 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 82/161 (50%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S +P++ ++ + + +D F + VD V KP + AR+ ++ ++ Sbjct: 59 LEVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNY 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E + V + ++ GE + +E +L+ L+ N G+ + + QI ++ Sbjct: 119 GHLEKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKD 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL+ D + + R +GY ++ Sbjct: 179 SEETPYDRVIDVYIKELRKKLQ----LDCITTIRNVGYKLE 215 >gi|332709036|ref|ZP_08429006.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332352225|gb|EGJ31795.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 231 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 101/204 (49%), Gaps = 19/204 (9%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTL 88 N E +L + + AI +L+ G LEL R +R +++ +P++ ++ L+ + Sbjct: 32 NGTEAWGYLNNHETQYTLAIFDWLL-PGLSGLELLRQLRYSNNPLPILMLTAKDRLEDRV 90 Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI----------RVFSDG 137 D+G DD + KP E+LARV A++RR + + + G + R+ ++G Sbjct: 91 MGLDTGADDYLVKPFLMAELLARVRALHRRTPLLQPQQLQVGDLILDYGNRTVYRLAANG 150 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 V PL +E ++LEY M + + + QI + ++ + E + NVV + + L Sbjct: 151 EKLHV-----PLTNKEFQLLEYFMKHPNQVMTTNQIRNQLWEVNAEPI-SNVVAAQMRLL 204 Query: 198 RKKLRNKLGFDPVDSKRFLGYSID 221 R+KL + P+++ LGY ++ Sbjct: 205 RRKLESINSSIPIETVHGLGYRLN 228 >gi|332296285|ref|YP_004438208.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] gi|332179388|gb|AEE15077.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] Length = 225 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 16/157 (10%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 P+I ++ S++ + DSG DD + KP E+L+RV A+ RR A + PI Sbjct: 75 STPVIILTAKDSVKDKVLGLDSGSDDYLTKPFSFEELLSRVRALIRR-----RFATSSPI 129 Query: 132 RVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 SD Q + L +E +LEYL N+ K +++T I I L+DE Sbjct: 130 IKISDLVIDTAQKTIKRGNKRIDLSAKEYALLEYLALNKNKVISRTSI---IEHLYDEDF 186 Query: 186 E--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ I+++R K+ + + R +GYS+ Sbjct: 187 DLYSNVIDVFINRIRNKIDKDFDKKLIHTYRGIGYSL 223 >gi|283832502|ref|ZP_06352243.1| DNA-binding response regulator BaeS [Citrobacter youngae ATCC 29220] gi|291072167|gb|EFE10276.1| DNA-binding response regulator BaeS [Citrobacter youngae ATCC 29220] Length = 240 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 6/155 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S+VP++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSEVPIMMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K + P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQMDADSPL-IVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|268610621|ref|ZP_06144348.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 234 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 93/217 (42%), Gaps = 29/217 (13%) Query: 2 FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + L G +G + + +N LE + L I+ LI Sbjct: 8 ILVVDDDHDIVNAIAKLLGKEGYIIYKAYNGLEAIDMLMQHE------IQLILID----- 56 Query: 61 LELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 + +P++ IR + +P+I +S + G DD + KP + E++ARV Sbjct: 57 VMMPKLDGLSAMMKIREKNNIPIIVLSAKSEDSDKILGLSMGADDYITKPYNPMELVARV 116 Query: 113 AAIYRRL--------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 + RR +S+N+ G + + D R + GE E +I E LM N Sbjct: 117 NSNLRRYLSLGAAGSTMSDNKLRIGGLELDKDARQITLDGEPVKFTPTEYKITELLMENA 176 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 G+ + I+S I+ D EN V HI +R+K+ Sbjct: 177 GRTFSAEDIYSRIWN-EDSYSVENTVMVHIRHIREKI 212 >gi|262039153|ref|ZP_06012473.1| transcriptional activator protein CopR [Leptotrichia goodfellowii F0264] gi|261746769|gb|EEY34288.1| transcriptional activator protein CopR [Leptotrichia goodfellowii F0264] Length = 243 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 10/162 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I + + P++ ++ ++ + D G DD + KP E+LARV + R+ S Sbjct: 79 LKKIREKNIKTPVLFLTARDRVEDRVKGLDYGADDYLIKPFAFEELLARVRVLLRK---S 135 Query: 123 NNRAETGPI----RVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ ++TG I + + D V L +E ILEYL+ N+GK V+K +I Sbjct: 136 SDTSQTGNIFKVENLTVNCNDHTVFRDETSIKLSAKEFAILEYLIRNKGKVVSKEKIEEH 195 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ FD N+VE +I LRKK+ + + + R +GY Sbjct: 196 VWD-FDYEGGSNIVEVYIKFLRKKIDDNFSPKLIHTIRRVGY 236 >gi|239617230|ref|YP_002940552.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506061|gb|ACR79548.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 226 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 +L + IR +S +P+I ++ + + G DD + KP +E++AR+ A RR+ Sbjct: 62 QLCKEIRTYSDLPIIFLTARDEEVNIVMGLELGADDYITKPFKLKELVARIRANLRRIEG 121 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K N +G IR+ + V+ L E R+L LM N G+ + + Q+ ++ Sbjct: 122 KKTVNRYLISGQIRLDIVNQKLMVEDAEQHLTPVEFRLLFALMDNAGRILTRDQLLGYVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 + V++N + HI KLR+K+ + DP + + R LGY Sbjct: 182 NTESDFVDDNTLSVHIRKLREKIED----DPSKPEHILTVRGLGY 222 >gi|209558840|ref|YP_002285312.1| Response regulator CsrR [Streptococcus pyogenes NZ131] gi|209540041|gb|ACI60617.1| Response regulator CsrR [Streptococcus pyogenes NZ131] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|218232702|ref|YP_002366911.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218160659|gb|ACK60651.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 227 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 17/205 (8%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQV-PLIGIS 79 LEFE + A+ A+E F G +L E+ R IR + V P+I ++ Sbjct: 22 LEFEGYESEIAKTGTEAMEKFGNGNWNLILLDVMLPNISGLEVLRRIRLKNAVIPIILLT 81 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFS 135 S+ + D G D + KP E+LAR+ A R V N+ + + + Sbjct: 82 ARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISNVIKEEENSSYQIADLYLDE 141 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 R+ + L RE +L +LM + + + + QI + ++G FD + NVV+ +I Sbjct: 142 KTREVKRGNHFVELTPREFDLLLFLMKHENQVLNREQIVTNVWG-FDYYGDTNVVDVYIR 200 Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220 LR+K+ + + + R +GY + Sbjct: 201 YLRRKIDCNVDVPLIHTVRGVGYVL 225 >gi|16801706|ref|NP_471974.1| two-component response phosphate regulator [Listeria innocua Clip11262] gi|16415181|emb|CAC97871.1| two-component response phosphate regulator [Listeria innocua Clip11262] Length = 236 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 12/119 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAE-------TGPIRVFSDGRDPEV 142 G DD + KP RE++AR+ AI RR +V+ + E G +++ D + + Sbjct: 95 GADDYMTKPFSPREVVARIKAILRRTEGKAEVTEEKTEDTEATILIGDLKILPDSYEVYL 154 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR K+ Sbjct: 155 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 212 >gi|323494003|ref|ZP_08099119.1| response regulator BaeR [Vibrio brasiliensis LMG 20546] gi|323311630|gb|EGA64778.1| response regulator BaeR [Vibrio brasiliensis LMG 20546] Length = 221 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 1/142 (0%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R +R+ S +P+I + L + G DD V KP RE++ARV + RR + Sbjct: 59 LDIYRELRSFSDIPIIMATAKVDEIDRLLGLELGADDYVCKPYSPRELVARVKNVLRRFQ 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + P++V D V L E ++L Y + G+ ++ Q+ + IY Sbjct: 119 HTPSHTTRSPLKVDPDKMQTLVDDTPVMLTPAEFQLLCYFNQHHGQVFSRDQLMNRIYS- 177 Query: 181 FDEAVEENVVESHISKLRKKLR 202 V + ++SHI LRKK++ Sbjct: 178 DGRVVTDRTIDSHIKNLRKKVQ 199 >gi|319648303|ref|ZP_08002520.1| sensory transduction protein yxdJ [Bacillus sp. BT1B_CT2] gi|317389938|gb|EFV70748.1| sensory transduction protein yxdJ [Bacillus sp. BT1B_CT2] Length = 257 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 7/162 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118 R IR HS P+I IS + ++G DD + KP + +LA++ RR Sbjct: 93 RQIRQHSTCPIIFISARSGEMDQVMAIENGGDDYIEKPFSYEVVLAKIKGQIRRAFGEYA 152 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +K E +++F + + + E L ++E ++LE L+ RG++V Sbjct: 153 VKQGEKVIEFEGVQLFVERFELHCRNEKLELSKKESKLLEVLL-ERGEKVTSRDRLMEKT 211 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+EN + +I+++RKKLR+ ++S R GY + Sbjct: 212 WETDTFVDENTLNVYITRIRKKLRSMDVPFSIESVRGEGYQL 253 >gi|313622401|gb|EFR92865.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria innocua FSL J1-023] Length = 240 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 12/119 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAE-------TGPIRVFSDGRDPEV 142 G DD + KP RE++AR+ AI RR +V+ + E G +++ D + + Sbjct: 99 GADDYMTKPFSPREVVARIKAILRRTEGKAEVTEEKTEDTEATILIGDLKILPDSYEVYL 158 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR K+ Sbjct: 159 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 216 >gi|296113942|ref|YP_003627880.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis RH4] gi|295921636|gb|ADG61987.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis RH4] Length = 256 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 82/172 (47%), Gaps = 6/172 (3%) Query: 52 FLIGKGEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108 +++ GE ++ R ++ A + +P+I ++ + D+GVDD + KP RE+ Sbjct: 80 WMMPHGESGIDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTREL 139 Query: 109 LARVAAIYRRLKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 ++RV A+ RR + + + G + + + + G + E R+L + + + + Sbjct: 140 ISRVKAVLRRTGIDMGKELMQAGNLSINTASQRVMAGGTEITMSITEYRLLCFFVTHSER 199 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + QI A++G + ++E ++ HI +LRK L + + R GY Sbjct: 200 AYTRAQILDAVWG-GNVYIDERTIDVHIRRLRKLLAPYGADTLIQTVRGTGY 250 >gi|258423308|ref|ZP_05686199.1| response regulator protein graR [Staphylococcus aureus A9635] gi|257846369|gb|EEV70392.1| response regulator protein graR [Staphylococcus aureus A9635] Length = 224 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 84/160 (52%), Gaps = 9/160 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121 R +R S VP++ +S + + + G DD + KP + ++A++ AIYRR+ Sbjct: 64 RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R T V +D +G + L + E ILE L+ + + V++ I +A++ Sbjct: 124 EEKRTLTWQDAVVDLSKDSIQKGDQTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 182 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218 DEA V +N + ++++LRKKL +++G D V++K GY Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKL-SEIGMDSAVETKVGKGY 220 >gi|227874892|ref|ZP_03993045.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|227844667|gb|EEJ54823.1| response regulator [Mobiluncus mulieris ATCC 35243] Length = 229 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 101/229 (44%), Gaps = 14/229 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGK-G 57 M ++D ++D + G G E F + + + A+ ++ ++ L G G Sbjct: 1 MIYFVEDDRNIRDLVVYTLGSTG--FEAFGCEDDKAFRAEMAKTPPELVLLDIMLPGTDG 58 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 ++L + R+ + +P+I ++ + + D G DD V KP E+++RV A+ R Sbjct: 59 IQILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLR 118 Query: 118 RLKVSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R S + G I + V GE L +E ++LE LM G ++ Sbjct: 119 RSSRSTQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRD 178 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Q+ +I+G + E V+ HI LRKKL + V + R +GY + Sbjct: 179 QLLDSIWG-YSFHGETRTVDVHIRTLRKKLGEAAKY--VKTVRGVGYKV 224 >gi|227487786|ref|ZP_03918102.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227542427|ref|ZP_03972476.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227092288|gb|EEI27600.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227181625|gb|EEI62597.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 230 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 10/168 (5%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R+ P++ ++ + + D+G DD + KP E+LARV +++RR Sbjct: 60 LEVCRTLRSTGDDRPILLLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLFRR- 118 Query: 120 KVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ ++A P + + D RD G+ L R E +LEYLM N K ++++ Sbjct: 119 SITESQAPEQPKELEFEDLVLNPDTRDVTRGGKPISLTRTEFALLEYLMRNPRKVLSRSD 178 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++G ++ N +E +I LRKK + + R +GY + Sbjct: 179 ILEEVWG-YNFPTSGNALEVYIGYLRKKTEANGESRLIHTVRGVGYVL 225 >gi|53717560|ref|YP_105537.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|53721677|ref|YP_110662.1| response regulator protein [Burkholderia pseudomallei K96243] gi|67639687|ref|ZP_00438526.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|76819632|ref|YP_337359.1| response regulator protein [Burkholderia pseudomallei 1710b] gi|124383153|ref|YP_001023876.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126447427|ref|YP_001078753.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|126458475|ref|YP_001074902.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134278880|ref|ZP_01765593.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|167722822|ref|ZP_02406058.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] gi|167741803|ref|ZP_02414577.1| DNA-binding response regulator [Burkholderia pseudomallei 14] gi|167818985|ref|ZP_02450665.1| DNA-binding response regulator [Burkholderia pseudomallei 91] gi|167827365|ref|ZP_02458836.1| DNA-binding response regulator [Burkholderia pseudomallei 9] gi|167848846|ref|ZP_02474354.1| DNA-binding response regulator [Burkholderia pseudomallei B7210] gi|167897444|ref|ZP_02484846.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] gi|167905799|ref|ZP_02493004.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] gi|167914106|ref|ZP_02501197.1| DNA-binding response regulator [Burkholderia pseudomallei 112] gi|167922015|ref|ZP_02509106.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] gi|217418866|ref|ZP_03450373.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|226194866|ref|ZP_03790457.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|237510584|ref|ZP_04523299.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|242313496|ref|ZP_04812513.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|254179219|ref|ZP_04885871.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|254183005|ref|ZP_04889597.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|254189661|ref|ZP_04896170.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|254192765|ref|ZP_04899200.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|254204353|ref|ZP_04910710.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|254209237|ref|ZP_04915584.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|254264557|ref|ZP_04955422.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] gi|254299935|ref|ZP_04967381.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|254356523|ref|ZP_04972798.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|52212091|emb|CAH38100.1| response regulator protein [Burkholderia pseudomallei K96243] gi|52423530|gb|AAU47100.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|76584105|gb|ABA53579.1| response regulator protein [Burkholderia pseudomallei 1710b] gi|124291173|gb|ABN00443.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126232243|gb|ABN95656.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|126240281|gb|ABO03393.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|134249299|gb|EBA49380.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|147744776|gb|EDK51859.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|147750460|gb|EDK57530.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|148025550|gb|EDK83673.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|157810251|gb|EDO87421.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|157937338|gb|EDO93008.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|160694546|gb|EDP84556.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|169649519|gb|EDS82212.1| DNA-binding response regulator [Burkholderia pseudomallei S13] gi|184213538|gb|EDU10581.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|217398170|gb|EEC38185.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|225932671|gb|EEH28667.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|235002789|gb|EEP52213.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|238520280|gb|EEP83741.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|242136735|gb|EES23138.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|254215559|gb|EET04944.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 220 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 12/162 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + R +P+I ++ +L + D G DD + KP E+LAR+ A+ RR Sbjct: 63 LAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLVKPFALEELLARIRAVNRR---Q 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 RA+T G +R+ E L +E +L LM G +++ Q +Y Sbjct: 120 AGRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E +E N V+ HI LRK KLG D + + R +GY I Sbjct: 180 S-WGEEIESNAVQVHIHNLRK----KLGHDTILTVRGVGYRI 216 >gi|313617204|gb|EFR89697.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria innocua FSL S4-378] Length = 240 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 12/119 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAE-------TGPIRVFSDGRDPEV 142 G DD + KP RE++AR+ AI RR +V+ + E G +++ D + + Sbjct: 99 GADDYMTKPFSPREVVARIKAILRRTEGKAEVTEEKTEDTEATILIGDLKILPDSYEVYL 158 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR K+ Sbjct: 159 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 216 >gi|261211760|ref|ZP_05926047.1| two-component system response regulator QseB [Vibrio sp. RC341] gi|262404056|ref|ZP_06080611.1| two-component system response regulator QseB [Vibrio sp. RC586] gi|260839110|gb|EEX65742.1| two-component system response regulator QseB [Vibrio sp. RC341] gi|262349088|gb|EEY98226.1| two-component system response regulator QseB [Vibrio sp. RC586] Length = 219 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 100/216 (46%), Gaps = 22/216 (10%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL + G++ DG+ + EEW DV ++ L K + + L I Sbjct: 19 ALDQTGWVPELSQDGI--DALYRATAEEW-------DVIVLDLGL-PKLDGLTVLKGIRD 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 + P++ +S +L ++ ++G DD + KP E++AR+ A RR S N + Sbjct: 69 ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPV 126 Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 + S D R +V +G+ L E +++ Y M N K +++T++ IY FD Sbjct: 127 MQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFMHNPEKVISRTELVEHIYKQDFDR- 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E I +LRK K+ D + + R LGY + Sbjct: 186 -DSNTIEVFIGRLRK----KIAPDVIKTVRGLGYQL 216 >gi|255524035|ref|ZP_05390997.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186892|ref|ZP_06855293.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255512322|gb|EET88600.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048606|gb|EFG88039.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 70/145 (48%), Gaps = 4/145 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR + P+I ++ + + G DD + KP +E+LARV A+ RR Sbjct: 65 IDVLKWIRKEYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKELLARVKAVLRRYN 124 Query: 121 VSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V N E + + +G+ +P +E ++ YL N+ + + Q+ + Sbjct: 125 VDNENKEVLSFEDLAIDINSYTVVYKGQEIKMPPKEFELVYYLANNKNRVFTREQLLCEV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202 +G +D + V+ H+ +LR+KL+ Sbjct: 185 WG-YDYPGDSRTVDVHVKRLREKLQ 208 >gi|251779963|ref|ZP_04822883.1| response regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084278|gb|EES50168.1| response regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 218 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 1/130 (0%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 +P+I ++ L + SG +D + KP E+LAR+ + RR ++N E + Sbjct: 72 NIPVIFLTAKNGLADKVTGLKSGAEDYIVKPFETVELLARIEIVLRRYSKNSNCIEFENL 131 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 +++ + R + E L +E ++ L+ N+ +++ + I+G ++ E ++ Sbjct: 132 KIYEEERLIKRDDETIDLTLKEFELMVLLVKNKNMALSREYLLEKIWG-YEYMGETRTID 190 Query: 192 SHISKLRKKL 201 +HI KLRKKL Sbjct: 191 NHIQKLRKKL 200 >gi|90020232|ref|YP_526059.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89949832|gb|ABD79847.1| response regulator receiver [Saccharophagus degradans 2-40] Length = 231 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 77/149 (51%), Gaps = 12/149 (8%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAETGPI 131 P+I + S + ++ +SG DD + KP+ E+LARV RRL + ++ G I Sbjct: 76 PVIFTTQRDSEEDIVEALNSGADDYLVKPLRKAELLARVNVARRRLGLASASTTLTLGDI 135 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V + R QGE + +++ + +L++N GK +++ + A++G+ + + V+ Sbjct: 136 LVDTQARTITKQGEQVKVTQKDFDVTVHLLSNVGKVLSREYLLKAVWGVSAD-LNTRTVD 194 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 H+S++R+ LG +P +GY I Sbjct: 195 MHVSRVRR----SLGINP-----DMGYCI 214 >gi|581296|emb|CAA54211.1| response regulator [Lactococcus lactis] gi|300069939|gb|ADJ59339.1| Nisin biosynthesis two-component system, response regulator NisR [Lactococcus lactis subsp. cremoris NZ9000] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 12/170 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ + IR P+I +S + + ++ G DD + KP ++++A+V A +R + Sbjct: 62 EICKRIRREISTPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKREER 121 Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S R + GPI + + R V G+ PL RE ILE L K + I Sbjct: 122 NKHAVHVFSEIRRDLGPITFYLEERRVCVNGQTIPLTCREYDILELLSQRTSKVYTREDI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + +Y + A+ ++ E +I ++R K +P+ + R LGY W+ Sbjct: 182 YDDVYDEYSNALFRSISE-YIYQIRSKF-APYDINPIKTVRGLGYQ--WH 227 >gi|116626085|ref|YP_828241.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116229247|gb|ABJ87956.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 230 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 15/166 (9%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ + +R S+VP++ ++ + + G DD + KP + RE+ AR+ AI RR + Sbjct: 61 EILKRLRQRSKVPVLMLTARGEDVDRIVGLELGADDYLAKPFNPRELAARIRAILRRYER 120 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +R ET I + R+ G+ L E ILE LM + G+ +++ + Sbjct: 121 DTPATGHRIETNGIVLDPGTREVTAGGKKIELTTFEFDILEMLMRSAGRVLSRDALMENF 180 Query: 178 YGL----FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 Y FD + ++ HIS LRKKL N G D + + R +GY Sbjct: 181 YNRKATPFDRS-----IDMHISHLRKKLEN--GDDLIKTIRGVGYQ 219 >gi|330831698|ref|YP_004394650.1| beta-lactamase response regulator [Aeromonas veronii B565] gi|328806834|gb|AEB52033.1| Beta-lactamase response regulator [Aeromonas veronii B565] Length = 224 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 19/226 (8%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-- 61 L++D A + D I DG +E F + Q R + + + ++ G + Sbjct: 8 LVEDEASIADTLIYALQTDGFEVEWFMLGQ-----QLLTRLEQTRPDFLILDVGLPDISG 62 Query: 62 -ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + +RA + +PL+ ++ L + G DD V KP RE+ ARV I RR + Sbjct: 63 FELCKQVRALTDIPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREVCARVRVILRRSQ 122 Query: 121 VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + V + R +G+ L R E +L+ LM G+ ++ Q+ ++ Sbjct: 123 PVA--PQPSALLVLDEERARIHFRGQPLALTRYEYLLLKTLMLAPGRVYSRQQLMDLVWQ 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221 +E+++ V++HI +R KLR DP + + R LGYS++ Sbjct: 181 DAEESLDRT-VDTHIKTIRAKLREH---DPEANLILTHRGLGYSLE 222 >gi|313673162|ref|YP_004051273.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] gi|312939918|gb|ADR19110.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] Length = 211 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 7/147 (4%) Query: 56 KGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 KGE +L R IR +P+I I+ + + F+ G DD + KP +E+L R+ A Sbjct: 55 KGEYIL---REIRKKGLDLPIIVITAKSDMDSKEICFEYGADDYIVKPFDPKELLLRIKA 111 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +R+ N + FS G+ V L R E +L L NRGK V +I Sbjct: 112 LTKRVYCCENLRIDNVLIDFS-GKKLYVDDMEVHLSRIEWELLCLLAQNRGKLVTMDKIL 170 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 S I+G D+ V + ++I LRK L Sbjct: 171 SYIWG--DKVVGTESIRTYIKNLRKAL 195 >gi|312277717|gb|ADQ62374.1| TCS response regulator CovR-like protein [Streptococcus thermophilus ND03] Length = 229 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 9/166 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ A +RR + Sbjct: 63 EVTRRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDI 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-------EVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + D + +VQ EV PL +RE +L L++N + + + ++ Sbjct: 123 EATKKAPAKASTYRDLK-LDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D+ +E NVV+ +I LR K+ + + R +GY I Sbjct: 182 LQVWK-YDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226 >gi|299832743|gb|ADJ56358.1| NisR [Lactococcus lactis subsp. lactis] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 12/170 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ + IR P+I +S + + ++ G DD + KP ++++A+V A +R + Sbjct: 62 EICKRIRREISTPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKREER 121 Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S R + GPI + + R V G+ PL RE ILE L K + I Sbjct: 122 NKHAVHVFSEIRRDLGPITFYLEERRVCVNGQTIPLTCREYDILELLSQRTSKVYTREDI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + +Y + A+ ++ E +I ++R K +P+ + R LGY W+ Sbjct: 182 YDDVYDEYSNALFRSISE-YIYQIRSKF-APYDINPIKTVRGLGYQ--WH 227 >gi|220929080|ref|YP_002505989.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999408|gb|ACL76009.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 230 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 5/144 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IR +S VP+I I+ + D G DD + KP E++AR+ AI RR+ Sbjct: 62 FEVCREIRQNSNVPIIMITAKAEEADRIMGLDIGADDYIVKPFSPGEVMARIRAILRRVD 121 Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +S+ + + + + +V G L ++E IL L N GK ++ + + Sbjct: 122 ISDEDDKKIIQHPGLEINISDYEVKVNGSPVNLTKKEIEILWLLSNNPGKVFSRDNLLDS 181 Query: 177 IYGLFDEAVEENVVESHISKLRKK 200 ++G ++ + V++HI +LR K Sbjct: 182 VWG-YEYFGDARTVDTHIKRLRAK 204 >gi|218673989|ref|ZP_03523658.1| two component transcriptional regulator, winged helix family protein [Rhizobium etli GR56] Length = 186 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 2/124 (1%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + + P++ +S ++ + G DD + KP H E++AR+ AI RR K Sbjct: 61 EVLRTLRLSKVKTPILILSGMAGIEDKVRGLGFGADDYMTKPFHKDELVARIHAIVRRSK 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + TG + V D + EV G+ L +E ++LE L +G + K + +YG Sbjct: 121 GHAQSVIMTGELIVNLDAKTVEVGGQRVHLTGKEYQMLELLSLRKGTTLTKEMFLNHLYG 180 Query: 180 LFDE 183 DE Sbjct: 181 GMDE 184 >gi|58039296|ref|YP_191260.1| two component response regulator [Gluconobacter oxydans 621H] gi|58001710|gb|AAW60604.1| Two component response regulator [Gluconobacter oxydans 621H] Length = 226 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 10/188 (5%) Query: 37 WLQSSAREDVSAIEAFLIG--KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94 +L S DV ++ L G G ++LE R + P++ +S + + +G Sbjct: 38 FLAVSENYDVVILDRMLPGGIDGLRILETLR--GQKNATPVLLLSALADVDERVAGLKAG 95 Query: 95 VDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPR 151 DD + KP E+LARV A+ RR + R G + + R + GE L Sbjct: 96 GDDYMTKPFAFSELLARVEALGRRGRPESAPQTRLVVGDLEMDLLSRTVKRGGEKIDLQP 155 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPV 210 RE R+LE+L+ + G+ V +T + ++ FD + NV++ H+S+LR+K+ + Sbjct: 156 REFRLLEFLIRHAGQVVTRTMLLERVWDYHFDP--QTNVIDVHVSRLRQKVDKPFDKPMI 213 Query: 211 DSKRFLGY 218 + R GY Sbjct: 214 HTIRNAGY 221 >gi|10957407|ref|NP_051624.1| response regulator [Deinococcus radiodurans R1] gi|6460836|gb|AAF12540.1|AE001826_9 response regulator [Deinococcus radiodurans R1] Length = 219 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 85/163 (52%), Gaps = 9/163 (5%) Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 EL R +RA ++VP++ ++ L ++ D G D + KP E+LA + A + RR Sbjct: 61 ELARELRAGGAEVPIVFLTARSDLADRVEGLDLGGDAYLVKPFELPELLAVLRAVVRRRA 120 Query: 120 KVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R E G R+ + GR QGE+ L RE +LE L +R + + ++ + + Sbjct: 121 AMCSARIEFAGGQGRLDTSGRQVWWQGELTGLTAREYALLEALTLSRERWFTREELLTKV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + + + VV+ ++S LR+KL + V S R LGY + Sbjct: 181 WG-PEFSGDMRVVDVYVSYLRRKLAP----EAVQSSRGLGYRV 218 >gi|223932685|ref|ZP_03624684.1| two component transcriptional regulator, winged helix family [Streptococcus suis 89/1591] gi|223898655|gb|EEF65017.1| two component transcriptional regulator, winged helix family [Streptococcus suis 89/1591] Length = 234 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 83/174 (47%), Gaps = 12/174 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S VP++ +S S + + G DD V KP +RE+ ARV A+ RR + Sbjct: 61 LEVARTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSE 120 Query: 121 VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 ++ + G + + D + G+ L RE +L +L + G+ + + Sbjct: 121 LAETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTR 180 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY I N Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDAPSRPEYILTRRGVGYFIKGN 233 >gi|331702134|ref|YP_004399093.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329129477|gb|AEB74030.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 231 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/208 (22%), Positives = 97/208 (46%), Gaps = 17/208 (8%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGE-------------KVLELPRIIRAHSQVPLIGI 78 L+FE++ A++ + A++ + +G LE+ R IR + +P+I + Sbjct: 22 LKFEDYQVLLAKDGLEALQVYDNNRGNLDLIILDWMLPKLDGLEVLRRIRKNDDIPVIMM 81 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR---VFS 135 + + + DSG DD + KP E+LAR+ + R + ++E + + + Sbjct: 82 TARDYVGDKVAGLDSGADDYITKPFEIEELLARIRVVLRHESHHHQQSELYTVEDLTLNT 141 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 R ++ L +RE +L L+ + G+ + + ++ A++G+ E + NVV+ +I Sbjct: 142 KSRQVSRGNQLIQLTQREYELLLTLIRHGGETLTRDELLDAVWGVDFEG-QPNVVDVYIR 200 Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 LR K+ + + R +GY + N Sbjct: 201 YLRNKVDRGYSKQLIHTVRGVGYVMSGN 228 >gi|290352251|dbj|BAI78836.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|239995459|ref|ZP_04715983.1| two component transcriptional regulator [Alteromonas macleodii ATCC 27126] Length = 250 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 11/123 (8%) Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRRL----------KVSNNRAETGPIRVFSDGR 138 ++++ GVDD ++ P R +AR+ + RR + S R E GP+++ Sbjct: 94 NYYEVGVDDYLSGPFDARMFIARIRSHMRRSMPSQEHLRPSQGSEERIEIGPLKIDQRFH 153 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 + G+V L RE +L+Y + + ++ Q+ S ++G E E+ V +HI++LR Sbjct: 154 SVTLNGQVLTLTAREFALLDYFCRHPNQVFSRNQLLSEVWGYNHEGY-EHTVNTHINRLR 212 Query: 199 KKL 201 KL Sbjct: 213 TKL 215 >gi|169827423|ref|YP_001697581.1| hypothetical protein Bsph_1857 [Lysinibacillus sphaericus C3-41] gi|168991911|gb|ACA39451.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 240 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 23/170 (13%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR P+I ++ ++ F G DD + KP E++ARV A RR + N + Sbjct: 78 IRETYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQLRRFTLYNQSS 137 Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + R + L E IL YL +NRGK ++ ++F I+G Sbjct: 138 KPHEDTIDFAGLMINKNTRQVLLNERQLSLTPTEFSILWYLSSNRGKVISSEELFQEIWG 197 Query: 180 --LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYSID 221 F+ N V HI LR+K+R D V++ +F+ GY+I+ Sbjct: 198 EKYFN---SNNTVMVHIRHLREKMR-----DSVENPKFIKTVWGVGYTIE 239 >gi|730156|sp|Q07597|NISR_LACLA RecName: Full=Nisin biosynthesis regulatory protein nisR gi|308848|gb|AAA25201.1| nisR [Lactococcus lactis] gi|575305|emb|CAA80466.1| NisR [Lactococcus lactis] gi|326406184|gb|ADZ63255.1| nisin biosynthesis two-component system, response regulator NisR [Lactococcus lactis subsp. lactis CV56] Length = 229 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 12/170 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ + IR P+I +S + + ++ G DD + KP ++++A+V A +R + Sbjct: 63 EICKRIRREISTPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKREER 122 Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S R + GPI + + R V G+ PL RE ILE L K + I Sbjct: 123 NKHAVHVFSEIRRDLGPITFYLEERRVCVNGQTIPLTCREYDILELLSQRTSKVYTREDI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + +Y + A+ ++ E +I ++R K +P+ + R LGY W+ Sbjct: 183 YDDVYDEYSNALFRSISE-YIYQIRSKF-APYDINPIKTVRGLGYQ--WH 228 >gi|319953318|ref|YP_004164585.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] gi|319421978|gb|ADV49087.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] Length = 224 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 4/152 (2%) Query: 52 FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 + G G +VL++ + + I IS SL L+ D G DD + KP H E+ +R Sbjct: 54 LVTGSGLEVLKVLK--QQDRNTATIIISANSSLDDKLEGLDLGADDYLIKPFHLAELNSR 111 Query: 112 VAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + AI RR K E I V + + V+G L R+E ++ + + N+ + ++K Sbjct: 112 IKAILRRGKFGGTETIEFNEISVDTRAKTVFVEGRALILTRKEYDLILFFITNKNRVLSK 171 Query: 171 TQIFSAIYGLFDEAVEE-NVVESHISKLRKKL 201 I ++G + ++ + + HI+ LRKKL Sbjct: 172 EIIAEHLWGDHSDLIDNYDFIYVHINNLRKKL 203 >gi|300313896|ref|YP_003777988.1| two component transcription response regulator protein [Herbaspirillum seropedicae SmR1] gi|300076681|gb|ADJ66080.1| two component transcription response regulator protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 7/166 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK-PIHHREILARVAAIYRRLK 120 E+ R +R S VP++ ++ + L + G DD + K P REI+ARV ++ RR Sbjct: 76 EICRQLRTFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNA 135 Query: 121 VSNNRAETGPIRVFSDGRD----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + R P R D V+GE L E R+L+ + G+ ++ Q+ + Sbjct: 136 LVQQRTAQAPARSLLHIDDVRHQASVRGEALNLTPLELRLLKTFASAPGQVFSREQLLNH 195 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ D +V + V++HI LR+KL G + + + +GY + Sbjct: 196 LHD-DDRSVTDRAVDTHIKNLRRKLEPCFPGHNAIQAVYGVGYCFE 240 >gi|161950137|ref|YP_402695.2| transcriptional regulatory protein YedW [Shigella dysenteriae Sd197] gi|309786827|ref|ZP_07681444.1| transcriptional activator protein irlR [Shigella dysenteriae 1617] gi|308925313|gb|EFP70803.1| transcriptional activator protein irlR [Shigella dysenteriae 1617] Length = 216 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 3/160 (1%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++D + I ++ G ++ + +R Q P+I ++ S+ + DSG +D + KP Sbjct: 42 KDDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP 101 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+LARV A R+ N+ E +R+ S + L R+E ++L L + Sbjct: 102 FSFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLAS 161 Query: 163 NRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201 G+ + +T I S I+G+ FD + N V+ I +LR K+ Sbjct: 162 RAGEIIPRTVIASEIWGINFDS--DTNTVDVAIRRLRAKV 199 >gi|332533790|ref|ZP_08409646.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas haloplanktis ANT/505] gi|332036721|gb|EGI73184.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas haloplanktis ANT/505] Length = 225 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 3/160 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 +EL + IRA S +P+I ++ L + G DD + KP +E++AR+ A+ RR Sbjct: 63 IELCKKIRAFSSLPIIMLTAKSEEIDRLQGLEIGADDYICKPFSPKEVIARIKAVLRRTS 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N ++ D + + G+ E +I +++ G+ + I + +Y Sbjct: 123 QPKTNIINHNNFQLHKDDYEARLNGKSIGFTAVEFKIFLLFISHVGRVFTREDIINNVYS 182 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 + + N +++HI +RKK+ + + G +P+ + +GY Sbjct: 183 DTTDISDRN-IDTHIKNIRKKINDIQAGLNPIAAVYSVGY 221 >gi|325275439|ref|ZP_08141370.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] gi|324099415|gb|EGB97330.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] Length = 224 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +RA S ++ ++ + L + D G DD + KP E+LAR+ ++ RR ++ + Sbjct: 66 LRAESATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRR---NDQQL 122 Query: 127 ETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 + +RV DP G+ L +E +L LM G+ +++TQI S ++ + Sbjct: 123 QPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVWDMN 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + NVVE I +LR K+ + + + R +GY ++ Sbjct: 183 FD--CDTNVVEVSIRRLRAKIDDPFDTKLIHTLRGVGYVLE 221 >gi|315660023|ref|ZP_07912881.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] gi|315494924|gb|EFU83261.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] Length = 223 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 30/210 (14%) Query: 14 GYIALFGDDGVSLEGFNSLEFEEW-----LQSSAREDVSAIEA-----FLIG------KG 57 GY AL +D + + SL + L S +E + +E L+ G Sbjct: 2 GYHALIIEDDIDIAHILSLTLTKMHIKTTLNFSGQEAIETLEKDQFDLILLDLMLPEVSG 61 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E+VL I+AH+ +I IS ++ + SG DD + KP +E+ AR+ R Sbjct: 62 EEVLSY---IKAHANSRVIVISAKTDVEEKVRLLSSGADDYLTKPFDTKELAARIDVQLR 118 Query: 118 RLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L+ G I + D R +V+ +V + E IL M + ++K Sbjct: 119 NLQ---QMPRQGDILTWRDLTIDKQTRKVQVKNQVLNVTNTEYDILCLFMLTPEQPISKQ 175 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +I+ I G++ ++N V HIS +RKKL Sbjct: 176 KIYENIQGIY--LGDDNTVNVHISNIRKKL 203 >gi|317046592|ref|YP_004114240.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|316948209|gb|ADU67684.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 219 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 100/204 (49%), Gaps = 18/204 (8%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPR------IIRAHSQ---VPLIG 77 +LE W R+ V A A+ G VL LPR + RA ++ P++ Sbjct: 18 QALEAAGWSVDWVRDGVFATNAWTEGGYSCVLLDLGLPREDGIHVLRRARNRGDMTPVLV 77 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSD 136 ++ ++ + DSG DD + KP +E+LAR+ AI RR +++ +G +++ Sbjct: 78 LTARDTVAQRVQGLDSGADDYLLKPFDLQEVLARMRAITRRRHGAADSLLGSGDVQLDMM 137 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 R+ +G+ L RE +L L+ G +++ Q+ + IYG + E V N V+ I Sbjct: 138 TREVLYKGQREQLTAREYALLYALLERPGAILSREQLENRIYG-WGEEVTSNAVDVLIHG 196 Query: 197 LRKKLRNKLGFDPVDSKRFLGYSI 220 +R+KL N++ + + R LG+ + Sbjct: 197 MRRKLDNEV----IRNVRGLGWRV 216 >gi|268316084|ref|YP_003289803.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262333618|gb|ACY47415.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 5/149 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR--AETGP 130 +P++ ++ ++ + +G DD + KP E+LAR+ A+ RR K R GP Sbjct: 75 LPVLMLTALDDVENRVRGLRAGADDYLPKPFAFEELLARIEALLRRSKRQPTRHLLRNGP 134 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189 + + + R L RE +L YLM + + +++ QI+ ++G FD ++ Sbjct: 135 LTLDLNARTATCGERTLSLTPREFDLLAYLMQHPRRAISRLQIYREVWGHDFDHGT--SL 192 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E +IS LR+KL+ + + R +GY Sbjct: 193 LEVYISYLRRKLQEAGCPGYIATVRGVGY 221 >gi|229011744|ref|ZP_04168926.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229170686|ref|ZP_04298329.1| Two-component response regulator [Bacillus cereus AH621] gi|228612789|gb|EEK69971.1| Two-component response regulator [Bacillus cereus AH621] gi|228749541|gb|EEL99384.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +P+I +S + SG DD ++KP + E++ARV + RR K N Sbjct: 68 IREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTNT 127 Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY- 178 E G + V +D R ++G L +E ILE L N+G ++ +I+ A++ Sbjct: 128 DNDKSVLEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIYEAVWK 187 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 F ++ +N V HI+K+R K+ Sbjct: 188 DAFYKS--DNTVMVHITKIRDKI 208 >gi|168705023|ref|ZP_02737300.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gemmata obscuriglobus UQM 2246] Length = 246 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/221 (23%), Positives = 97/221 (43%), Gaps = 35/221 (15%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG----KG 57 V+++D ++ G D + L G+ E + + ++ L+ K Sbjct: 6 IVVVEDEPAIRRGV-----SDALRLSGYEVTEAADGATGLREAGAAGVDLVLLDIMLPKR 60 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 + + L + R + P++ ++ S + G DD V KP +E++ARV AI R Sbjct: 61 DGLEVLSELRRTNPTRPVVLLTARGSEDDRVRGLKMGADDYVVKPFSAKELIARVEAILR 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR---------------ILEYLMA 162 R +R + R E+ + L RRE R +L+YL++ Sbjct: 121 R-----------TMRSVREVRVVELGSGIIDLLRREVRWADGTRLDLSETEAALLKYLVS 169 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 NR + V++ ++ S ++G+ +E V+ H+++LR KLR+ Sbjct: 170 NRERAVSREELLSRVWGIGTAGLETRAVDMHVARLRAKLRD 210 >gi|167846150|ref|ZP_02471658.1| DNA-binding response regulator [Burkholderia pseudomallei B7210] Length = 231 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 3/134 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAE 127 + +P++ +++ ++ ++G DD + KP RE +ARV A+ RR VS E Sbjct: 72 APLPILVLTNAVLETDLVEALEAGADDYLIKPPREREFVARVNALRRRASVSKQFEGTIE 131 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G R+ + R + GE PL +E I+E L + G+ V + I S ++G E Sbjct: 132 IGGYRIATVERAVYLAGERIPLSPKEYEIVELLARHVGQVVPRKTIISRVWGRAAEEEVS 191 Query: 188 NVVESHISKLRKKL 201 +++HI ++R+K+ Sbjct: 192 RSLDTHIYRIRRKM 205 >gi|134103035|ref|YP_001108696.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915658|emb|CAM05771.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 223 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 20/139 (14%) Query: 77 GISDYPSLQTT--------LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRA 126 GISD P++ T + +G DD V KP + AR+ A+ RR + S Sbjct: 67 GISDVPTIVATARDDEREIVRLLRAGADDYVVKPFSSEHLNARIEAVLRRARGSRPPQAV 126 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI----YGLFD 182 E G +R+ D R + G L RRE +L YL A G+ V + ++ + + YG Sbjct: 127 EVGGLRIDLDSRAATLDGAELELTRREFDLLAYLAARPGRVVPRRELLAQVWRQSYG--- 183 Query: 183 EAVEENVVESHISKLRKKL 201 ++ ++ H+S LR+KL Sbjct: 184 ---DDQTIDVHLSWLRRKL 199 >gi|113866571|ref|YP_725060.1| response regulator [Ralstonia eutropha H16] gi|113525347|emb|CAJ91692.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 229 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ + +RA + +P++ ++ S+ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLKRLRARGAMLPVLILTAADSVDERVKGLDLGADDYMAKPFALSELEARVRALVRRG 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+ GR + ++ L RE +LE L+ G+ V+K Q+ + Sbjct: 120 AGGGATLMRHGPLAYDQVGRIAYLNEQMLDLSAREIGLLEILLTRSGRLVSKEQLVDHLC 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E ++ +LRKK+ ++G + + R LGY ++ Sbjct: 180 E-WGEEVSNNAIEVYVHRLRKKI--EVGGIRIATVRGLGYCLE 219 >gi|75760053|ref|ZP_00740117.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218900246|ref|YP_002448657.1| DNA-binding response regulator [Bacillus cereus G9842] gi|74492441|gb|EAO55593.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218545333|gb|ACK97727.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 225 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 7/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++D S + + +G DD + KP E++ARV AI RR Sbjct: 62 EICRQIRLVKTTPIIIVTDNISSEDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSD- 120 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + ET + +F D V+ GE L +RE +L +L+ N+ +++ + + Sbjct: 121 CNQQNETNFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ V NVV+ +I +RKKL+ + + + GYS+ Sbjct: 181 VWG-YNVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 223 >gi|47568103|ref|ZP_00238808.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241] gi|47555257|gb|EAL13603.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241] Length = 225 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N R + + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDDHLKTVYGVGYRW 220 >gi|330809326|ref|YP_004353788.1| two-component regulator system response regulator PmrA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377434|gb|AEA68784.1| Putative two-component regulator system response regulator PmrA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 220 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/218 (26%), Positives = 105/218 (48%), Gaps = 22/218 (10%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 +AL ++GY + DG S +SL E + D++ ++ L + + + L R+ Sbjct: 18 QALSREGYTVDWVQDGSS--ALHSLLSETF-------DLAVLDLGL-PRMDGLQVLRRLR 67 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 + S +P++ ++ + + + D+G DD + KP E+ AR+ A+ RR S RA Sbjct: 68 DSGSNLPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRR---SAGRAQ 124 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E I + + QG+ L +E ++L L++ G+ + + + +YG +E Sbjct: 125 ALIEHAGISLNPGTQQVSYQGKPVALTPKEYQLLHELLSPPGRVMTRDHLMQLLYGWSEE 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A E N +E HI LRKK D + + R +GY ++ Sbjct: 185 A-ESNTLEVHIHHLRKKFST----DLIRTIRGVGYLVE 217 >gi|304405488|ref|ZP_07387147.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304345527|gb|EFM11362.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 14/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS--SAREDVSAIEAF-LIGKGEK 59 +L+DD +I F + G++ EGF+ + + + A+E V + ++ G Sbjct: 10 LLVDDEP-----HILQFLELGLANEGFDVRTAPDGMTAINLAQEFVPHVIVLDVMMPGMD 64 Query: 60 VLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E R+I+ S+V +I ++ + + G DD + KP E+LAR+ A R Sbjct: 65 GFETCRMIKKGGSEVAVIMLTAKDEVDDRVKGLTLGADDYLVKPFSFDELLARIRARLRN 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E R D R E+Q G+ L E +L+Y++AN G ++K+ I Sbjct: 125 -QFPMLFGEVKLGRFSIDDRRKEIQYEGQALELSPTEYELLKYMVANHGIVLSKSTILDK 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++G +D EEN+VE ++ LR KL +K + + R GY ID + Sbjct: 184 VWG-YDFGGEENIVEVYVRSLRDKLGDK-EHRLIRTLRGAGYRIDLS 228 >gi|284006850|emb|CBA72116.1| two-component system, OmpR family, response regulator BaeR [Arsenophonus nasoniae] Length = 184 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 4/152 (2%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L + R +R S +P+I ++ L + G DD + KP RE++AR+ Sbjct: 13 LMLPGTDGLSICRQLRQFSDIPIIIVTAKTEEHDRLVGLEIGADDYICKPFSPREVIARI 72 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAK 170 I RR A+ +++ D ++ Q + L E R+L++L + GK ++ Sbjct: 73 KTILRRC-YRQTVAQNSDLKLIIDDSAYQIHFQHQTVELTPAEFRLLKFLSQHPGKVFSR 131 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 ++ + +Y + V + ++SHI LR+KL+ Sbjct: 132 DKLLNNLYDDY-RIVTDRTIDSHIKNLRRKLQ 162 >gi|229010082|ref|ZP_04167296.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229056424|ref|ZP_04195837.1| Two-component response regulator [Bacillus cereus AH603] gi|229131595|ref|ZP_04260477.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228651821|gb|EEL07776.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228720898|gb|EEL72447.1| Two-component response regulator [Bacillus cereus AH603] gi|228751215|gb|EEM01027.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKRIRSFSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQHAQIQYHGILWDEAKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDHHLKTVYGVGYRW 220 >gi|182412142|ref|YP_001817208.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177839356|gb|ACB73608.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 241 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +RA S++P+I ++ + + + G DD + KP RE++AR+ A+ RR Sbjct: 75 LAVCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRRGT 134 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + A G + V R + L E +L YL NRG+ +++ +I G Sbjct: 135 RDDAEALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDRILDGTRG 194 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYS 219 ++ + + I L +LR KLG DP + + R +GYS Sbjct: 195 -----IDWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYS 234 >gi|182417803|ref|ZP_02949118.1| DNA-binding response regulator [Clostridium butyricum 5521] gi|237668490|ref|ZP_04528474.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378527|gb|EDT76058.1| DNA-binding response regulator [Clostridium butyricum 5521] gi|237656838|gb|EEP54394.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] Length = 223 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 86/167 (51%), Gaps = 20/167 (11%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S +P+I ++ S L + G DD V+KP + + +LAR+AA+ +R S Sbjct: 63 ICREIRKTSDIPIIIVTSRDSDMDELMSMNLGADDFVSKPYNTQILLARIAALLKR---S 119 Query: 123 NNRAETGPIRVFSDGR-----------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + T ++++ + D E++ L + E +IL L+ N+G V++ Sbjct: 120 GGSSNTSKYLIYNNFKINLSNATISREDKEIE-----LTKNEIKILSCLIENKGSIVSRE 174 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + ++ D V+++ + +I++LR+KL D ++++R LGY Sbjct: 175 ILMEYLWK-SDYFVDDSTLTVNITRLRRKLEGIGIKDAIETRRGLGY 220 >gi|158338636|ref|YP_001519813.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308877|gb|ABW30494.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 225 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 13/149 (8%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R +RA +P++ ++ + +D D+G DD V KP EI AR+ A+ RR Sbjct: 60 LAFCRQMRAQGLDIPVLMLTARDTTANKVDGLDAGADDYVVKPCELEEISARIRALLRRG 119 Query: 120 KVSNNRAETGPIRVFSDGR-DPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ + PI + D + +P Q E+ L +E +LE + N+ + ++ QI Sbjct: 120 PMT-----SPPILEWEDLKLNPNTCEVFFQEEIIALTPKEYSLLELFLRNKRRVFSRAQI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR 202 ++ ++ EE+ V++HI LR KL+ Sbjct: 175 LEHLWA-YEVLPEEDTVKAHIKGLRHKLK 202 >gi|49480229|ref|YP_034909.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331785|gb|AAT62431.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 225 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQHAQIQYHGILWDEARHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D+ K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220 >gi|107026106|ref|YP_623617.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692710|ref|YP_838243.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105895480|gb|ABF78644.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116650710|gb|ABK11350.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] Length = 224 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 10/154 (6%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128 P++ +S + ++ +G DD + KP E+ AR+ + RR + R ET Sbjct: 74 TPVLVMSAMSGVDQRIEGLRAGGDDYLVKPFSLEEMCARIDVLIRR-RPRGARVETVLRA 132 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187 G + + R + L E R+LE++M N G+ + +T IF A++G FD Sbjct: 133 GELALDLVRRRATLGARELTLLPTESRVLEFMMRNAGRVLTRTMIFEAVWGCRFDPGT-- 190 Query: 188 NVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 N+++ HI +LRKK+ N+ G P + + R GY + Sbjct: 191 NLIDVHIGRLRKKV-NRPGAAPLIRTIRGSGYML 223 >gi|299143947|ref|ZP_07037027.1| DNA-binding response regulator ResD [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518432|gb|EFI42171.1| DNA-binding response regulator ResD [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 223 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 80/157 (50%), Gaps = 5/157 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124 I+ + +P++ +S L F+ G+DD V KP +E++AR+ I +R + + N Sbjct: 67 IKKINDIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVKRRQRIIENA 126 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E +++ DGR V GE + +E +L +L N +++ ++ S ++G +D Sbjct: 127 VLEFQGLKIDLDGRVVYVDGEKVDMTPKEYDLLVFLATNENIALSRDKLLSKVWG-YDFY 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ V++HI LR +++ F + + R GY D Sbjct: 186 GDDRTVDTHIKMLRNSIKDYRKF--IVTVRGTGYKFD 220 >gi|297567022|ref|YP_003685994.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851471|gb|ADH64486.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 227 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 81/165 (49%), Gaps = 11/165 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR S VP++ ++ ++ ++ D+G DD + KP E+LAR+ A RR+ Sbjct: 66 IEVARRIRKTSNVPILILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRRV- 124 Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 A TG IRV +GR+ G L +E +LE L + GK ++ +I Sbjct: 125 ---TPAITGEIRVADLIINLEGREVYRSGRRIELSNKEFELLELLAKSPGKVFSRFEIEE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + NVV+ +I LRKKL + + R +GY + Sbjct: 182 KVWPGYQGG--SNVVDVYIGYLRKKLEGIGERRLIHTVRGVGYVL 224 >gi|222085319|ref|YP_002543849.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221722767|gb|ACM25923.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 252 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 5/156 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R P++ +S + + +G DD + KP E+LARV + RR + Sbjct: 95 RKGVHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPDQDVL 154 Query: 128 TGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 + D EV+ G+ PL RE R+LEYLM N G+ V +T + ++ FD Sbjct: 155 YRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP- 213 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ H+S+LR K+ + + R GY I Sbjct: 214 -QTNVIDVHVSRLRSKIEKDFSQPLLKTIRGAGYMI 248 >gi|222084784|ref|YP_002543313.1| phosphate regulon transcriptional regulatory protein PhoB [Agrobacterium radiobacter K84] gi|221722232|gb|ACM25388.1| phosphate regulon transcriptional regulatory protein PhoB [Agrobacterium radiobacter K84] Length = 211 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + +G DD V KP E++ARV A+ R Sbjct: 46 IELCRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELMARVKAMLR 105 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + V + G I + + + L E R+LE+LMA+ + +++Q+ Sbjct: 106 RARPEVLSTVLRCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMASPSRVFSRSQLLD 165 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK L D + + R GYS++ Sbjct: 166 GVWG-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 210 >gi|217076267|ref|YP_002333983.1| DNA-binding response regulator [Thermosipho africanus TCF52B] gi|217036120|gb|ACJ74642.1| DNA-binding response regulator [Thermosipho africanus TCF52B] Length = 239 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 45/213 (21%) Query: 11 VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE---KVLELPRII 67 +KD I +F D + L G + EF ++S + + + FL KGE KVL L Sbjct: 43 IKDKEIDMFLVD-IMLPGMDGFEFVRNIRSQEKYKSTPV-IFLSAKGEEFDKVLGL---- 96 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 + G DD + KP RE+LAR+ A++RR+++S E Sbjct: 97 ------------------------ELGADDYITKPFSIRELLARIKAVFRRMQLSTQVKE 132 Query: 128 TGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 P ++ + D + +++G+ L E +L +L N GK ++ + ++G Sbjct: 133 EKPKKIVAKDLEIDVDKYEVKIKGKKVNLTPLEFDLLRFLAENEGKVFSRNVLLDKLWG- 191 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +D + V+ HI +LR K+ DP + K Sbjct: 192 YDYFGDTRTVDVHIRRLRTKIEE----DPSNPK 220 >gi|257060465|ref|YP_003138353.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|256590631|gb|ACV01518.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 250 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 96/200 (48%), Gaps = 14/200 (7%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL + GY + DG + N L+ L + + D+ ++ L L++ R++R Sbjct: 37 ALEEQGYEVITASDGRT--ALNLLQDVATLGTESGFDLVVLDLML--PQVNGLDICRLLR 92 Query: 69 AHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 ++ VP++ +S S + + G DD + KP RE++AR A+ RR +N Sbjct: 93 YNNNIVPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCRALIRRQDFNN--VS 150 Query: 128 TGPIRVFSD-GRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + P+R F D PE V+GE L +E R+LE M+ + ++ Q+ ++G Sbjct: 151 SAPVRKFKDISLYPEECRVVVRGEEINLSPKEYRLLELFMSYPRRVWSREQLIDQVWGA- 209 Query: 182 DEAVEENVVESHISKLRKKL 201 D + V+ HI LR+KL Sbjct: 210 DFLGDTKTVDVHIRWLREKL 229 >gi|157375725|ref|YP_001474325.1| two component transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157318099|gb|ABV37197.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 230 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 5/145 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LE+ + IR HS +P+I I+ L + G DD + KP RE++ARV A+ RR+ Sbjct: 66 LEVCKQIRQHSNIPIIMITARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVIRRVV 125 Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N + IR+ +G G L + E + + G+ ++ Q+ Sbjct: 126 NQTSSNTNDIQLDGIRLDEEGFKVSKSGFQCELTKVEFYLFHAMFKQPGRIFSRDQLMDI 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 IY V + ++SHI K+RKK+ Sbjct: 186 IYD-DRHVVSDRTIDSHIKKVRKKI 209 >gi|83643658|ref|YP_432093.1| phosphate regulon transcriptional regulatory protein phoB [Hahella chejuensis KCTC 2396] gi|83631701|gb|ABC27668.1| Phosphate regulon transcriptional regulatory protein phoB [Hahella chejuensis KCTC 2396] Length = 230 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 9/136 (6%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 S++PLI ++ + + G DD + KP RE++AR+ A+ RR V ET P Sbjct: 76 SEIPLIMLTAKTEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRRTAVQG--MET-P 132 Query: 131 IRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 I V DP +G+ + E ++L++ M ++ + + Q+ ++G + V Sbjct: 133 IEVEGLRLDPVCHRVTAKGDALNMGPTEYKLLQFFMTHQERVYTRGQLLDQVWG-GNVYV 191 Query: 186 EENVVESHISKLRKKL 201 EE V+ HI +LRK L Sbjct: 192 EERTVDVHIRRLRKAL 207 >gi|15894147|ref|NP_347496.1| two-component response regulator [Clostridium acetobutylicum ATCC 824] gi|15023754|gb|AAK78836.1|AE007601_7 Two-component response regulator [Clostridium acetobutylicum ATCC 824] gi|325508275|gb|ADZ19911.1| Two-component response regulator [Clostridium acetobutylicum EA 2018] Length = 231 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 11/148 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 EL + +R S +P+I IS S T + G DD + KP ++ AR+ + RR +K Sbjct: 65 ELLQKVRGISAMPVIVISAKLSKDTKVRMLKIGADDYITKPFDMDDVDARIYSNLRRYIK 124 Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + I VF D + V G+ L RE +ILE L+ N+ K +K +F Sbjct: 125 FGKDESFNSKI-VFKDMILDSVAMEVIVNGQRMSLTNREFKILEVLLLNKRKVFSKANLF 183 Query: 175 SAIYGLFDEAV-EENVVESHISKLRKKL 201 +++ D + ++N + HIS LR KL Sbjct: 184 ESVWE--DTYMGDDNTLNVHISNLRNKL 209 >gi|148544993|ref|YP_001272363.1| two component transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184154327|ref|YP_001842668.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|148532027|gb|ABQ84026.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri DSM 20016] gi|183225671|dbj|BAG26188.1| two-component response regulator [Lactobacillus reuteri JCM 1112] Length = 226 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 13/159 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R HSQVP+I IS + +G DD + KP +LA++ A+ RR K + + Sbjct: 67 VRKHSQVPIIVISAAEIDTNVMHAVAAGADDYIMKPFAMTVLLAKIQALLRRNKQTADAE 126 Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E P+ + Q L E +L+ L+++R K V+K Q+ ++ Sbjct: 127 EIMWDHNSFNPLTNILTNENGTAQ-----LTPTEGSMLQVLLSHRNKTVSKEQLLQWLWQ 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + EN + +IS+LR KL + ++R LGY Sbjct: 182 -GGKYLNENTLNVNISRLRTKLSTIGLRQCIHTERGLGY 219 >gi|322385035|ref|ZP_08058685.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] gi|321270945|gb|EFX53855.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] Length = 233 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 11/173 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R IR S VP+I +S S + + G DD V KP +RE+LARV A+ RR + Sbjct: 61 LDVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKALLRRSE 120 Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + S G +++ D + G+ L RE +L +L + G+ + + Sbjct: 121 LIPDSHVDESSPKELFIGDLQILPDAFVVKKHGKELELTHREFELLHHLATHVGQVMTRE 180 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY I N Sbjct: 181 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYIRNN 232 >gi|228933892|ref|ZP_04096736.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825768|gb|EEM71557.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 235 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P++ IS + ++G DD ++KP H+ ++A++ + RR Sbjct: 65 RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 KV E + ++ + +++ + + R E +LE LM N + V++ + + ++ Sbjct: 125 PKVEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEAILLEMLMKNYPRIVSREVLLNKLW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223 + V++N + + +++RKKL+ DP+++ R +GY I W+ Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLQIEDPIETIRSVGYRLHITWD 230 >gi|229107385|ref|ZP_04237252.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228676057|gb|EEL31035.1| DNA-binding response regulator [Bacillus cereus Rock3-28] Length = 223 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S +P+ ++ S L + G DD + KP + +LARV I RR + Sbjct: 63 ICREIRKTSDIPIFMVTSRDSDVDELISMNLGADDFITKPYNTEILLARVTNILRR---T 119 Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +T I ++ D Q + L + E +IL L+ NRG V + + Sbjct: 120 SGDFKTNHILIYRDFNLNLSNATVTYQDKSVELTKNEVKILSCLINNRGNIVKRDSLIET 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 ++ D V+++ + +I++LRKKL ++G +P+ ++R LGY Sbjct: 180 LWK-SDYFVDDSTLTVNINRLRKKLE-EIGIENPIATRRSLGY 220 >gi|15903150|ref|NP_358700.1| DNA-binding response regulator [Streptococcus pneumoniae R6] gi|182684045|ref|YP_001835792.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|15458732|gb|AAK99910.1| Response regulator [Streptococcus pneumoniae R6] gi|182629379|gb|ACB90327.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] Length = 251 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 11/153 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ + IR S VP++ +S S + + G DD V KP +RE+ ARV A+ RR Sbjct: 78 LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 137 Query: 119 -LKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + V A++ P + + D + GE L RE +L +L ++ G+ + + Sbjct: 138 PMPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITR 197 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ + +LR+K+ + Sbjct: 198 EHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 229 >gi|320094688|ref|ZP_08026444.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319978373|gb|EFW09960.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 241 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 5/158 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ A P++ ++ ++ + G DD V KP E++AR+ AI RR ++ Sbjct: 79 RLRDAGLTTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMGGDD 138 Query: 125 ---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + + D + + G L E ++L YL+ N G+ V+K QI ++ + Sbjct: 139 EDGKLRVGDLVIDEDAHEVKRAGVDIDLSPTEFKLLRYLVINAGRVVSKMQILDHVWE-Y 197 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 D E +VES+IS LR+KL + + +KR +GY Sbjct: 198 DWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGY 235 >gi|299132545|ref|ZP_07025740.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298592682|gb|EFI52882.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 221 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 97/200 (48%), Gaps = 5/200 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVL 61 +LI+D ++ D IA +G++++ + E ++ + ++ L G+ G +L Sbjct: 4 LLIEDDRMIGDSLIAALKREGMTVDWVRTGADGEDALANGGHGLVLLDIGLPGRSGVDLL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 + R RA + P++ I+ + + D G DD + KP RE+LAR+ A+ RR Sbjct: 64 KDAR--RAGNSTPVLIITARDGVDDRIIGLDVGADDYIVKPFEMRELLARMRAVLRRHAG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G + + + + +G LP RE ++ L G +++++I IYG Sbjct: 122 AAQSILIAGDVTLDLESHEATYRGTTAVLPAREFALMHALAERPGAILSRSRIEERIYG- 180 Query: 181 FDEAVEENVVESHISKLRKK 200 + E VE N ++ I +RKK Sbjct: 181 WGEEVESNAIDFLIHSIRKK 200 >gi|295097669|emb|CBK86759.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 220 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 104/221 (47%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+++G G++G +L+ + + L S + ++ L K L Sbjct: 3 LLIVEDDLLLQEGLALALGNEGYALDCATTAAEADALIQSGEYSLVILDLGLPDKDGATL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L + R + P++ ++ +++ ++ DSG DD + KP E+ ARV A+ RR + Sbjct: 63 -LCQWRRRGVENPVLILTARDAIEDRINGLDSGADDYLVKPFALAELQARVRALIRRYQG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S+N G I + + Q + + +E +L L+ G+ V + + IY Sbjct: 122 HSDNLLTDGDITLNLQTQQVLRQSQPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYSW 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D+ N +E HI LR+ KLG D + + R +GY ++ Sbjct: 182 QDDP-GSNTLEVHIHNLRR----KLGKDRIKTVRGVGYRLE 217 >gi|289422899|ref|ZP_06424728.1| two-component system, response regulator [Peptostreptococcus anaerobius 653-L] gi|289156686|gb|EFD05322.1| two-component system, response regulator [Peptostreptococcus anaerobius 653-L] Length = 217 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 83/161 (51%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S +P++ ++ + + +D F + VD V KP + AR+ ++ ++ Sbjct: 59 LEVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNY 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ E + V + ++ GE + +E +L+ L+ N G+ + + QI ++ Sbjct: 119 GHLDKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNSGQVLTRMQIIDYVWKD 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL+ D + + R +GY ++ Sbjct: 179 SEEIPYDRVIDVYIKELRKKLQ----LDCITTIRNVGYKLE 215 >gi|237747933|ref|ZP_04578413.1| response regulator receiver protein [Oxalobacter formigenes OXCC13] gi|229379295|gb|EEO29386.1| response regulator receiver protein [Oxalobacter formigenes OXCC13] Length = 233 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 85/162 (52%), Gaps = 14/162 (8%) Query: 67 IRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 IR H ++ P+I ++ + + D G DD + KP +E++AR+ A+ RR KV Sbjct: 71 IREHREMKALPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRR-KVP- 128 Query: 124 NRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +RA++ +R S DPE + G + E ++L++LMAN + +++Q+ ++ Sbjct: 129 DRAKS-LLRAGSVTLDPESCQVNIDGSDVEMGNSEFKLLKFLMANPDRVFSRSQLLDKVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +EE V+ H+ +LRK L+ + V + R +GY + Sbjct: 188 S-NQLDIEERTVDVHVLRLRKALKGQENL--VRTVRGMGYML 226 >gi|237732127|ref|ZP_04562608.1| transcriptional response regulatory protein [Citrobacter sp. 30_2] gi|226907666|gb|EEH93584.1| transcriptional response regulatory protein [Citrobacter sp. 30_2] Length = 240 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 6/155 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S+VP++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSEVPIMMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K + P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQMDADSPL-IVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|153952801|ref|YP_001393566.1| sensory transduction protein [Clostridium kluyveri DSM 555] gi|219853466|ref|YP_002470588.1| hypothetical protein CKR_0123 [Clostridium kluyveri NBRC 12016] gi|146345682|gb|EDK32218.1| Predicted sensory transduction protein [Clostridium kluyveri DSM 555] gi|219567190|dbj|BAH05174.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 4/145 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR + P+I ++ + + G DD + KP +E+LAR+ A+ RR Sbjct: 65 IDVLKWIRKDYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKEMLARIKAVLRRYS 124 Query: 121 VSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V N E + + + E +P +E +L YL N+ + + Q+ + Sbjct: 125 VDNENKEVLKFEQLTIDINSYTVTYRNEDIKMPPKEFELLYYLANNKNRVFTREQLLCEV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202 +G +D + V+ H+ +LR+KL+ Sbjct: 185 WG-YDYPGDSRTVDVHVKRLREKLQ 208 >gi|146309134|ref|YP_001189599.1| DNA-binding response regulator CreB [Pseudomonas mendocina ymp] gi|145577335|gb|ABP86867.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 226 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 6/163 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R S+VP+I ++ + + G DD V KP RE+ ARV I +R+ Sbjct: 61 FEVCKRLRRFSEVPVIFLTARSEEIDRVVGLEIGADDYVVKPFSPREVAARVKVILKRMA 120 Query: 121 VSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 A G F G+ L R E R+L L+ + ++ Q+ A+ Sbjct: 121 PRETPA-AGAASAFQIDDAAFCIHYHGQALSLTRHEFRLLRTLLGQPRRVYSREQLLDAL 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 G+ E E ++SHI LR KLR +P+ + R LGYS Sbjct: 180 -GVASEVGYERNIDSHIKSLRAKLRAIAPAEEPIQTHRGLGYS 221 >gi|126700886|ref|YP_001089783.1| two-component response regulator [Clostridium difficile 630] gi|255102435|ref|ZP_05331412.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255308339|ref|ZP_05352510.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|296451936|ref|ZP_06893652.1| response regulator [Clostridium difficile NAP08] gi|296879670|ref|ZP_06903646.1| response regulator [Clostridium difficile NAP07] gi|115252323|emb|CAJ70164.1| Two-component response regulator [Clostridium difficile] gi|296259250|gb|EFH06129.1| response regulator [Clostridium difficile NAP08] gi|296429339|gb|EFH15210.1| response regulator [Clostridium difficile NAP07] Length = 225 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/208 (23%), Positives = 95/208 (45%), Gaps = 23/208 (11%) Query: 15 YIALFGDDGVSLEGFNSLEFEE-----WLQSSAREDVSAIEAFLIGKGEKVLELPRI--- 66 Y L DD V + N + F + +A++ + +E+ ++ + LP I Sbjct: 2 YNLLVVDDDVDILNINQIYFSNIGFNVYTSETAKDAMDIVESIVLDCIILDISLPDIDGY 61 Query: 67 -----IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 I+ +P+I +S+Y + + F +G DD + KP +E+ R IY R++ Sbjct: 62 KMCNDIKEKVNIPIIFLSNYEHEEEKVRGFLAGGDDYITKPYSLKELELR---IYARMRQ 118 Query: 122 SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N + FS + R GE L E IL +L N+ + +K +I++ Sbjct: 119 YKNITSVPNVLKFSALVINVNSRKVTFDGESIDLTTMEFEILLFLAENKEQVFSKIEIYN 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ + D +++ V+ HI+++RKK+ + Sbjct: 179 QVWKMPDIG-DQHTVQVHIAQMRKKINS 205 >gi|332655153|ref|ZP_08420894.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332516013|gb|EGJ45622.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 222 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 3/141 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP++ ++ + TL + G DD V KP +LA++ A+ RR + Sbjct: 63 VCRAVRRQSSVPILFLTALGGEEETLRGYALGADDYVTKPFSLAVLLAKLQALIRRSRGE 122 Query: 123 NNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G I+V + R G+ L RE +L L+ N+G+ +++ Q+ ++GL Sbjct: 123 RKTGVLSCGAIQVDTGARRCTAAGQEIKLSPREYELLLCLLRNQGQVLSRAQLLDKVWGL 182 Query: 181 FDEAVEENVVESHISKLRKKL 201 E ++ V+ + LR L Sbjct: 183 DFEG-DDRAVDVRVRSLRAAL 202 >gi|311744153|ref|ZP_07717958.1| response regulator [Aeromicrobium marinum DSM 15272] gi|311312508|gb|EFQ82420.1| response regulator [Aeromicrobium marinum DSM 15272] Length = 219 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 7/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 L R+ R +P+I ++ S+ T+ + G D ++KP E+LARV R Sbjct: 64 LERLRRERPGLPVIVLTARDSVTDTVAALEGGAADYMSKPFRFDELLARVRLRLRVASEP 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ E G +R+ R V G L RE + E LM +RG+ +++ Q+ S ++G Sbjct: 124 AADDAVEVGDVRLDLRTRRTTVAGREVDLSAREFTLAEVLMRHRGQVLSREQLLSQVWG- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D NVV+ ++ LRK KLG D V + R +GY +D Sbjct: 183 YDFDPGSNVVDVYVGYLRK----KLGADLVSTVRGVGYRVD 219 >gi|285019588|ref|YP_003377299.1| two component system regulatory protein [Xanthomonas albilineans GPE PC73] gi|283474806|emb|CBA17305.1| probable two component system regulatory protein [Xanthomonas albilineans] Length = 241 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 23/178 (12%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL R +R S VP+I ++ + D+G +D V KP +E++AR+ + Sbjct: 71 GHSVL---RELRQWSSVPVIMLTVRAGEAEKVQALDAGANDYVTKPFGVQELMARIRVLL 127 Query: 117 RRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R ++ + AE VF DG R+ ++GE PL R+E +L L+ + G+ V Sbjct: 128 R-MQPTTGEAEP----VFDDGHLHIHIGLREVRLEGEPLPLSRKEYALLALLLRHSGRVV 182 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK------LGFDPVDSKRFLGYSI 220 + Q+ ++G + + + + + KLR+KL + + +P RF+G S Sbjct: 183 TQPQLLRELWGPTHQD-DTHYLRILVGKLRQKLGDSAVAPRYIATEPGVGLRFIGMSC 239 >gi|229165596|ref|ZP_04293370.1| Two-component response regulator [Bacillus cereus AH621] gi|228617879|gb|EEK74930.1| Two-component response regulator [Bacillus cereus AH621] Length = 225 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKRIRSFSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQHAQIQYHGILWDEAKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDHHLKTVYGVGYRW 220 >gi|205352249|ref|YP_002226050.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272030|emb|CAR36874.1| response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627294|gb|EGE33637.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 248 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/214 (24%), Positives = 97/214 (45%), Gaps = 14/214 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L + GY+ + DG + L + +E S I ++ G ++ R + Sbjct: 40 RGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 88 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ R Sbjct: 89 RTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 148 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 + + + + G+ L R+E +L L + G+ V +T I S ++G+ FD E Sbjct: 149 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 206 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N V+ I +LR K+ + + + R +GY + Sbjct: 207 TNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240 >gi|116623411|ref|YP_825567.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116226573|gb|ABJ85282.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 225 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 109/220 (49%), Gaps = 22/220 (10%) Query: 16 IALFGDDGVSLEGFNSLEFEEWLQSSARE-----DVSAIEAFLIGKGEKVLELPR-IIRA 69 IAL +D +++EG++ + + ++ R D+ ++ L GK LE+ R + RA Sbjct: 13 IALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVMLPGK--DGLEVCRELRRA 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN--RAE 127 + P++ ++ + + G DD V KP +E+ AR+ A+ RR + Sbjct: 71 GLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLRRASGDTDLETCS 130 Query: 128 TGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + V F+ G + ++G+ L E ++L+ + RG+ +++ Q+ +A +G D Sbjct: 131 FGDVEVDFARG-ELRLKGKAVELTPIEFKLLDVFIRARGRVLSRDQLIAATWG-RDTFTS 188 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 +V++HI+ LR+ K+G DP + + R LGY D Sbjct: 189 ARIVDNHIANLRR----KIGDDPAEPRYLRNVRGLGYRFD 224 >gi|320527553|ref|ZP_08028733.1| putative subtilin biosynthesis regulatory protein SpaR [Solobacterium moorei F0204] gi|320132110|gb|EFW24660.1| putative subtilin biosynthesis regulatory protein SpaR [Solobacterium moorei F0204] Length = 230 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 9/147 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P++ +S + + G DD ++KP RE+LAR+ A RR + Sbjct: 61 EVCRKIRDEVLCPILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARIDANLRREQR 120 Query: 122 SNN-RAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S AE R++ + ++ GE PL +RE I+E L + G+ ++ I Sbjct: 121 SQYINAEKKRTRLYFNELSIDLLEHSVKIDGETIPLSKRECDIVELLALHAGQVFSREHI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK 200 + ++G +D + V HI K+RKK Sbjct: 181 YERVWG-YDSDGDSYTVVEHIRKIRKK 206 >gi|297563588|ref|YP_003682562.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848036|gb|ADH70056.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 234 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 5/145 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ R +RA S V ++ ++ + + L D G DD V KP RE++ARV + RR + Sbjct: 62 LDACRALRAESDVAVLMLTARSTEEDLLTGLDLGADDYVTKPYSPRELMARVRTLLRRSR 121 Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + A+ GP+ V V G E ++L L A G+ + + Q+ Sbjct: 122 RDPDDADRVLRAGPVAVDPSRHAVRVDGVPVTCTPAEFQLLAALAAQPGRVLTRAQLLEH 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 I+G+ + E ++ H+ LR+KL Sbjct: 182 IHGM-SRFITERTIDVHVKNLRRKL 205 >gi|281491759|ref|YP_003353739.1| nisin biosynthesis two-component system, response regulator NisR [Lactococcus lactis subsp. lactis KF147] gi|281375473|gb|ADA64983.1| Nisin biosynthesis two-component system, response regulator NisR [Lactococcus lactis subsp. lactis KF147] Length = 229 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 12/170 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ + IR P+I +S + + ++ G DD + KP ++++A+V A +R + Sbjct: 63 EICKRIRREISTPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKREER 122 Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S R + GPI + + R V G+ PL RE ILE L K + I Sbjct: 123 NKHAVHVFSEIRRDLGPITFYLEERRVCVNGQTIPLTCREYDILELLSQRTSKVYTREDI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + +Y + A+ ++ E +I ++R K +P+ + R LGY W+ Sbjct: 183 YDDVYDEYSNALFRSISE-YIYQIRSKF-APYDINPIKTVRGLGYQ--WH 228 >gi|241889065|ref|ZP_04776369.1| sensory transduction protein BceR [Gemella haemolysans ATCC 10379] gi|241864314|gb|EER68692.1| sensory transduction protein BceR [Gemella haemolysans ATCC 10379] Length = 222 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 12/161 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I IS + + G DD + KP + A++ A+ RR+ N + Sbjct: 67 IRKLSKVPIIFISSANDDMNIVMAMNIGADDFIEKPFKLVVLKAKIEALLRRVY---NFS 123 Query: 127 ETGPIRVFSD-----GRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + V+ D RD + Q + L + E +I L+ NR K V + +I +A++ Sbjct: 124 GSSNLVVYKDVIFDMSRDEVKYQDNLVELTKNEGKIFTVLLENREKIVTREEIITALWQS 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 D ++EN + +I++LR KL++ +G D + +K+ GY + Sbjct: 184 -DNFIDENTLSVNINRLRSKLKS-IGIDEFITTKKGKGYIV 222 >gi|227364137|ref|ZP_03848234.1| response regulator [Lactobacillus reuteri MM2-3] gi|325683340|ref|ZP_08162856.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] gi|227070776|gb|EEI09102.1| response regulator [Lactobacillus reuteri MM2-3] gi|324977690|gb|EGC14641.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] Length = 239 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 13/159 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R HSQVP+I IS + +G DD + KP +LA++ A+ RR K + + Sbjct: 80 VRKHSQVPIIVISAAEIDTNVMHAVAAGADDYIMKPFAMTVLLAKIQALLRRNKQTADAE 139 Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E P+ + Q L E +L+ L+++R K V+K Q+ ++ Sbjct: 140 EIMWDHNSFNPLTNILTNENGTAQ-----LTPTEGSMLQVLLSHRNKTVSKEQLLQWLWQ 194 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + EN + +IS+LR KL + ++R LGY Sbjct: 195 -GGKYLNENTLNVNISRLRTKLSTIGLRQCIHTERGLGY 232 >gi|167757089|ref|ZP_02429216.1| hypothetical protein CLORAM_02638 [Clostridium ramosum DSM 1402] gi|167703264|gb|EDS17843.1| hypothetical protein CLORAM_02638 [Clostridium ramosum DSM 1402] Length = 223 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 4/144 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LEL +IR H P+I ++ S + ++ G DD + KP E+ ARV A RR K Sbjct: 60 LELCTMIREHVNCPIIFLTARISSRDMINGLMLGGDDYITKPFSMDELFARVQAHLRREK 119 Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S++++ T + + R ++ + +E I++ L N G+ + +I+ + Sbjct: 120 RSSHKSRGHFTRELIIDYSQRTVIIKNKKIDFSNKEFEIIKLLSMNAGQIFDREKIYEVV 179 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G F+ + V++ HI K+R KL Sbjct: 180 WG-FEANGDSAVIKEHIRKIRMKL 202 >gi|238798946|ref|ZP_04642410.1| Two-component system response regulator [Yersinia mollaretii ATCC 43969] gi|238717216|gb|EEQ09068.1| Two-component system response regulator [Yersinia mollaretii ATCC 43969] Length = 227 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 18/211 (8%) Query: 24 VSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80 +S EGFN+ L +E + + D +A+ ++ +++ R +R S++P+I ++ Sbjct: 20 LSGEGFNAELVLTGKEGIDRALSGDYTALILDIMLPDMSGIDVLRQVRKKSRLPIIMLTA 79 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-------GPIRV 133 + + G DD + KP + RE++AR+ A+ RR + + T G + + Sbjct: 80 KGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDEHPDLSSTDDGVITHGDLTL 139 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 R E QG F L E +LE L+ + + V K ++ G EA + + V+ H Sbjct: 140 NPSTRSSEWQGTSFDLTASEFNLLELLLRSPDRVVTKDELSDKGLGRPREAYDRS-VDVH 198 Query: 194 ISKLRKKLR----NKLGFDPVDSKRFLGYSI 220 IS +R+KL N L + V R +GY I Sbjct: 199 ISNIRQKLAALPGNTLNIETV---RSIGYRI 226 >gi|319892740|ref|YP_004149615.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus pseudintermedius HKU10-03] gi|317162436|gb|ADV05979.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus pseudintermedius HKU10-03] gi|323464228|gb|ADX76381.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus pseudintermedius ED99] Length = 234 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 26/224 (11%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS--AREDVSAIEAFLIGKGEKVLELPRII 67 L + GY+ DG EE LQ + D+ ++ L K +E+ + I Sbjct: 22 LEQSGYVVEVAQDG-----------EEALQKEKETKPDLIVLDVMLPKKDG--IEVCKTI 68 Query: 68 RA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNR 125 R+ +QVP++ ++ + + G DD + KP RE++ARV AI RR V + R Sbjct: 69 RSDKNQVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSSLVDHVR 128 Query: 126 AE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E G IR+ D + E+ L +E +L YL+ +G+ + + + ++++ Sbjct: 129 KEEEDEDIVIGSIRIRPDFFEVYRNDELLELTPKEFELLLYLVERQGRVITREHMLNSVW 188 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 ++ A + +V+ HIS LR KL N + + R LGY ++ Sbjct: 189 N-YEFAGDSRIVDVHISHLRDKLEENPKQPQFIKTVRGLGYKLE 231 >gi|304384695|ref|ZP_07367041.1| response regulator [Pediococcus acidilactici DSM 20284] gi|304328889|gb|EFL96109.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 8/171 (4%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L+++ ED AI L+ +E+ R IR P+I ++ S+ + D G DD Sbjct: 38 LEAALSEDFDAILLDLMLPEINGIEVCRRIRREKITPIIMMTARDSIIDRVSGLDHGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLP 150 + KP E+LAR+ A+ RR+ + E I + + R + EV L Sbjct: 98 YIVKPFAIEELLARLRAVLRRVDLEEQDTSFHQTTVEFKDIVIEKENRVVKRNNEVINLT 157 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +RE +L LM N ++ + S ++GL D VE NVV+ +I LR K+ Sbjct: 158 KREYELLLLLMENVNVVQSRETLLSKVWGLED-GVETNVVDVYIRYLRNKI 207 >gi|300742302|ref|ZP_07072323.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567] gi|300381487|gb|EFJ78049.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567] Length = 240 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 94/194 (48%), Gaps = 12/194 (6%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSG 94 E ++ + E I ++ G E+ R +R A P++ ++ + + + +G Sbjct: 45 EAIEKAENEQPDLIVLDVMMPGMDGFEVTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAG 104 Query: 95 VDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF------P 148 DD V KP E++AR+ AI RR + N + E I D EVF Sbjct: 105 GDDYVTKPFSLDEVIARIRAILRRSR--NAQEEDDAILRVDDLSLNIDTHEVFLGDEEID 162 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGF 207 L E +L YLM N + ++K QI ++ +D + ++VES+IS LR+K+ N+ G Sbjct: 163 LSPTEFNLLHYLMLNANRVLSKAQILDHVWE-YDFNGDSSIVESYISYLRRKIDNNREGH 221 Query: 208 DP-VDSKRFLGYSI 220 +P + +KR +GY I Sbjct: 222 EPLIHTKRGVGYMI 235 >gi|295102500|emb|CBL00045.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 226 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 15/230 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 +F+L DD +L+ G F G +L+ +L E L S + D+ ++ L G G Sbjct: 4 LFLLEDDLSLIS-GLTFAFKKQGFALDTARTLAEAEALWSDRKYDLLVLDVSLPDGSG-- 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + + +R S VP++ ++ + D G DD + KP +L+RV A+ RR Sbjct: 61 -FDFCQKVRRTSNVPILFLTASDEEMNIIMGLDMGGDDYLTKPFKLGVLLSRVNALLRRA 119 Query: 120 KVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S+ E+G I V G + L E ++L + M + ++K QI A Sbjct: 120 NASSAGEPVLESGSITVRLLQGQAYKNGILLELTGAEYKLLCFFMQHPNAVLSKEQILDA 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL---GYSIDWN 223 ++ + ++ + + +I +LR K+ + DP + L G WN Sbjct: 180 LWDCDGDYIDSSALTVYIRRLRMKIED----DPGKPQMLLTVRGMGYKWN 225 >gi|262165813|ref|ZP_06033550.1| two-component system response regulator QseB [Vibrio mimicus VM223] gi|262025529|gb|EEY44197.1| two-component system response regulator QseB [Vibrio mimicus VM223] Length = 219 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 22/219 (10%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL + G++ DG+ + EEW DV ++ L K + + L I Sbjct: 19 ALDQTGWVPELSQDGI--DALYRATAEEW-------DVIVLDLGL-PKLDGLTVLKGIRD 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 + P++ +S +L ++ ++G DD + KP E++AR+ A RR S N + Sbjct: 69 ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPV 126 Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 + S D R +V +G+ L E +++ Y M N K +++T++ IY FD Sbjct: 127 MQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFMHNPEKVISRTELVEHIYKQDFDR- 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + N +E I ++RK K+ D + + R LGY + N Sbjct: 186 -DSNTIEVFIGRIRK----KIAPDVIKTVRGLGYQLHAN 219 >gi|237735839|ref|ZP_04566320.1| two-component system response regulator [Mollicutes bacterium D7] gi|229381584|gb|EEO31675.1| two-component system response regulator [Coprobacillus sp. D7] Length = 218 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 4/144 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LEL +IR H P+I ++ S + ++ G DD + KP E+ ARV A RR K Sbjct: 55 LELCTMIREHVNCPIIFLTARISSRDMINGLMLGGDDYITKPFSMDELFARVQAHLRREK 114 Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S++++ T + + R ++ + +E I++ L N G+ + +I+ + Sbjct: 115 RSSHKSRGHFTRELIIDYSQRTVIIKNKKIDFSNKEFEIIKLLSMNAGQIFDREKIYEVV 174 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G F+ + V++ HI K+R KL Sbjct: 175 WG-FEANGDSAVIKEHIRKIRMKL 197 >gi|229065498|ref|ZP_04200746.1| Two-component response regulator [Bacillus cereus AH603] gi|228715816|gb|EEL67588.1| Two-component response regulator [Bacillus cereus AH603] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +P+I +S + SG DD ++KP + E++ARV + RR K N Sbjct: 68 IREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTNT 127 Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY- 178 E G + V +D R ++G L +E ILE L N+G ++ +I+ A++ Sbjct: 128 DNDKSVLEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIYEAVWK 187 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 F ++ +N V HI+K+R K+ Sbjct: 188 DAFYKS--DNTVMVHITKIRDKI 208 >gi|152996884|ref|YP_001341719.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150837808|gb|ABR71784.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 226 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 14/148 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R S VP+I ++ L + G DD V KP REI+ARV A RR++ Sbjct: 61 VEICKQVRQFSGVPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREIVARVKANLRRVE 120 Query: 121 VSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++AE+ +DG D +V +G++ L E ++L+ L+ G+ + I Sbjct: 121 L--DQAESPR----TDGFDLDVDRLRATYKGDLIDLTTVEFQLLQLLIKEPGRVFGRDLI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 +IY V + ++SHI KLRKK+ Sbjct: 175 MKSIYA-DSRVVSDRTIDSHIKKLRKKI 201 >gi|21241807|ref|NP_641389.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|78046628|ref|YP_362803.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926361|ref|ZP_08187691.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas perforans 91-118] gi|325927126|ref|ZP_08188393.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas perforans 91-118] gi|21107184|gb|AAM35925.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|78035058|emb|CAJ22703.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542509|gb|EGD13984.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas perforans 91-118] gi|325543254|gb|EGD14687.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas perforans 91-118] Length = 229 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 14/182 (7%) Query: 33 EFEEWLQSSAREDVSAI-----EAFLIG---KGEKVLELPRIIRAHS---QVPLIGISDY 81 EFE ARE +AI + L+ G L+L R R ++P+I ++ Sbjct: 26 EFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLDLARRWRKEQLTREIPIIMLTAR 85 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE 141 + ++GVDD V KP RE+LAR+ A+ RR + + ++ DG Sbjct: 86 GEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTREDDEDGSVAVGKLRIDGAAHR 145 Query: 142 VQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 V P+P E R+L + M + + +TQ+ ++G VEE ++ HI +LRK Sbjct: 146 VFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVWG-GSVYVEERTIDVHIRRLRK 204 Query: 200 KL 201 L Sbjct: 205 TL 206 >gi|320547404|ref|ZP_08041692.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] gi|320447949|gb|EFW88704.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] Length = 230 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 8/166 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + +I ++ S+ + D G DD + KP E+LARV A++RR + Sbjct: 63 EITRRLRLEKETSIIMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARVRAVFRRQEA 122 Query: 122 SNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + G +R+ R + L +RE +L L++N + + + ++ Sbjct: 123 NSEHDKEGQAKEGLLGLRLNPQNRSAVRGDDEISLTKREYDLLSVLLSNVNRVMTREELL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++++ +D +E NVV+ +I LR K+ + + R +GY I Sbjct: 183 ASVWR-YDTDIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYII 227 >gi|256370539|ref|YP_003108050.1| phosphate regulon transcriptional regulatory protein Phob [Brucella microti CCM 4915] gi|256000702|gb|ACU49101.1| phosphate regulon transcriptional regulatory protein Phob [Brucella microti CCM 4915] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 20/171 (11%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + G DD V KP E+LARV A+ R Sbjct: 64 IELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 123 Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R LKV + + RV+ ++ EV L E R+LEY M + G+ Sbjct: 124 RANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSPGRVF 176 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +++Q+ ++G D V++ V+ H+ +LRK + DP+ + R GYS Sbjct: 177 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKAINVGRAADPIRTVRGAGYS 226 >gi|229073674|ref|ZP_04206788.1| Two-component response regulator [Bacillus cereus F65185] gi|228709461|gb|EEL61521.1| Two-component response regulator [Bacillus cereus F65185] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 7/148 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + R IR S VP+I ++ TL F+ G DD V KP +LAR + Sbjct: 64 VCRRIRKTSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYSS 123 Query: 119 -LKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + V+N + I + R + E L E IL YLM N+G + + Q+ + Sbjct: 124 VISVTNEDTLMNSGIYIHFPSRTATLDKEAISLTHTEFEILTYLMQNQGIVITREQLITK 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204 I+G ++ A ++ + SHI LR KL K Sbjct: 184 IWG-YEFAGDDRTINSHIRNLRHKLGKK 210 >gi|218895392|ref|YP_002443803.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218543363|gb|ACK95757.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 237 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 15/162 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 63 IEVCKKLRYKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V S+N A+ F + E L +E +L++ +N G+ KTQ Sbjct: 123 VLGSSNTAQEKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213 +F ++ D +E +N V HI KLRKK+ DP + K Sbjct: 183 LFQNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218 >gi|330811056|ref|YP_004355518.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379164|gb|AEA70514.1| Putative response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 252 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 16/179 (8%) Query: 39 QSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98 Q+ E I L+ GE L+L R +RA S +P++ ++ + + G DD Sbjct: 60 QAMQAEHFDVIVLDLMLPGEDGLQLCRWLRAESDIPILMLTARCEPTDRIIGLELGADDY 119 Query: 99 VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPR 151 + KP RE++AR+ I RR V ++R+E F + R V G V PL Sbjct: 120 MAKPFEPRELVARIQTILRR--VRDDRSEQRANIRFDNWRLNSVLRQLISADGLVVPLSN 177 Query: 152 RERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 E R+L ++ R +RV ++ Q+ A G EA + + I L +LR KLG DP Sbjct: 178 AEFRLL-WVFIERPRRVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 230 >gi|326559342|gb|EGE09769.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis 7169] Length = 230 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/172 (22%), Positives = 82/172 (47%), Gaps = 6/172 (3%) Query: 52 FLIGKGEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108 +++ GE ++ R ++ A + +P+I ++ + D+GVDD + KP RE+ Sbjct: 54 WMMPHGESGIDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTREL 113 Query: 109 LARVAAIYRRLKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 ++RV A+ RR + + + G + + + + G + E R+L + + + + Sbjct: 114 ISRVRAVLRRTGIDMGKELMQAGNLSINTASQRVMAGGTEITMSITEYRLLCFFVTHSER 173 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + QI A++G + ++E ++ HI +LRK L + + R GY Sbjct: 174 AYTRAQILDAVWG-GNVYIDERTIDVHIRRLRKLLAPYGADTLIQTVRGTGY 224 >gi|323137186|ref|ZP_08072265.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] gi|322397544|gb|EFY00067.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] Length = 230 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 8/154 (5%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128 + P + +S + + +G DD + KP E+LARV A+ RR +V ET Sbjct: 75 ETPALILSALGQVDDRVKGLRAGGDDYLPKPYSFSELLARVEALARR-RVGPRGEETHYR 133 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 G + + V G+ L RE R+LEYLM N G+ V +T + ++ FD + Sbjct: 134 VGDLELDRLSHKVTVGGQEIALQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP--Q 191 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NV++ HIS+LR K+ + + R GY I Sbjct: 192 TNVIDVHISRLRAKIDKGRENPLLHTIRGAGYMI 225 >gi|300947806|ref|ZP_07161962.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300452626|gb|EFK16246.1| response regulator receiver domain protein [Escherichia coli MS 116-1] Length = 240 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167 I RR K + AE+ P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|229097656|ref|ZP_04228614.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|228685795|gb|EEL39715.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 9/149 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----- 117 + R IR S VP+I ++ TL F+ G DD V KP +LAR + Sbjct: 64 VCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYSS 123 Query: 118 --RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ ++ +G I V R + GE L E IL Y M N+G +++ Q+ + Sbjct: 124 AVKVLTADTLTSSG-IHVHFPSRTVTIDGEDISLTHTEFEILTYFMQNQGIVISREQLIN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK 204 I G ++ A ++ + SHI LR KL K Sbjct: 183 KILG-YEFAGDDRTINSHIRNLRHKLGQK 210 >gi|225077278|ref|ZP_03720477.1| hypothetical protein NEIFLAOT_02337 [Neisseria flavescens NRL30031/H210] gi|224951422|gb|EEG32631.1| hypothetical protein NEIFLAOT_02337 [Neisseria flavescens NRL30031/H210] Length = 225 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 14/167 (8%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I +P++ ++ L + L+ D G DD + KP E+ AR+ A+ RR Sbjct: 63 LAQIRSGGCTIPVLIVTARDDLHSRLNGLDGGADDYIVKPFDMAELQARMRAVLRR---H 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +A+T G I + EV G + L +E +L+ L+ G ++++ + Sbjct: 120 GGQAQTLLSNGIITLNPSTHQAEVVGQEQAIMLSNKEFAVLQALLLRPGMILSRSDLEDK 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 IYG + E VE N V+ I LRK KLG + + + R +G+ + N Sbjct: 180 IYG-WGEEVESNAVDFLIHALRK----KLGKEAIQNVRGVGWLVAQN 221 >gi|239813409|ref|YP_002942319.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239799986|gb|ACS17053.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 237 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 3/133 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128 S+ P++ ++ ++ ++G DD + P+ E+ ARV A+ RR + + E Sbjct: 72 SRAPILFVTTTRDETAVVEGLNAGADDFMVAPVRATELEARVNALLRRSYPAQHETELVF 131 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 GP + R +V G L RE + +L N G+ +++ + A++G+ A+ + Sbjct: 132 GPYHFYPPARVLKVNGTPVELKNREYALALFLFQNLGRLLSREHLHEAVWGVGTAALSRS 191 Query: 189 VVESHISKLRKKL 201 +++HIS+LR KL Sbjct: 192 -LDTHISRLRTKL 203 >gi|222110688|ref|YP_002552952.1| winged helix family two component heavy metal response transcriptional regulator PhoB [Acidovorax ebreus TPSY] gi|221730132|gb|ACM32952.1| two component transcriptional regulator PhoB, winged helix family [Acidovorax ebreus TPSY] Length = 235 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 88/172 (51%), Gaps = 14/172 (8%) Query: 57 GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G+ L+L R RA S Q+P++ ++ + D+G DD + KP +E+LAR+ Sbjct: 60 GQSGLQLARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119 Query: 114 AIYRRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 A+ RR +VS++ G + + + QG+ + E ++L YLM + + ++ Sbjct: 120 AVLRRRAPEQVSDS-VSIGELVLDAATYRVSYQGQQLKVGPTEFKLLHYLMKHPERVHSR 178 Query: 171 TQIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Q+ I+G +F +EE V+ H+ +LR+ L +G V++ R GY + Sbjct: 179 AQLLDKIWGDHVF---IEERTVDVHVKRLREAL--GVGGAMVETVRGAGYRL 225 >gi|154686839|ref|YP_001422000.1| YrkP [Bacillus amyloliquefaciens FZB42] gi|154352690|gb|ABS74769.1| YrkP [Bacillus amyloliquefaciens FZB42] Length = 231 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 7/150 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E + IR S VP++ ++ S + +G DD + KP E+ ARV A RR Sbjct: 61 IETCQHIRKTSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYT 120 Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + E G +RV + + + + L E RIL+ LM+ R K + I Sbjct: 121 IYQEKKEQEETFLIGGNLRVSEEFNEVYKEEQQIKLSDLEYRILKLLMSKRNKIFSAQNI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + +++G N V HI KLR K+ + Sbjct: 181 YESVWGQPYFYCSNNTVMVHIRKLRSKIED 210 >gi|49482887|ref|YP_040111.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257424777|ref|ZP_05601204.1| response regulator protein graR [Staphylococcus aureus subsp. aureus 55/2053] gi|257427446|ref|ZP_05603845.1| response regulator protein graR [Staphylococcus aureus subsp. aureus 65-1322] gi|257430077|ref|ZP_05606461.1| response regulator protein graR [Staphylococcus aureus subsp. aureus 68-397] gi|257432779|ref|ZP_05609139.1| response regulator protein graR [Staphylococcus aureus subsp. aureus E1410] gi|257435683|ref|ZP_05611731.1| response regulator protein graR [Staphylococcus aureus subsp. aureus M876] gi|282903251|ref|ZP_06311142.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus C160] gi|282905037|ref|ZP_06312895.1| two-component system OmpR family response regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282910303|ref|ZP_06318107.1| response regulator protein graR [Staphylococcus aureus subsp. aureus WBG10049] gi|282913496|ref|ZP_06321285.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus M899] gi|282918449|ref|ZP_06326186.1| two-component system, OmpR family, response regulator [Staphylococcus aureus subsp. aureus C427] gi|282923414|ref|ZP_06331094.1| two-component system, OmpR family, response regulator [Staphylococcus aureus subsp. aureus C101] gi|283957459|ref|ZP_06374912.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus A017934/97] gi|293500542|ref|ZP_06666393.1| two-component system, OmpR family, response regulator [Staphylococcus aureus subsp. aureus 58-424] gi|293509489|ref|ZP_06668200.1| two-component system, OmpR family, response regulator [Staphylococcus aureus subsp. aureus M809] gi|293524075|ref|ZP_06670762.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus M1015] gi|297590450|ref|ZP_06949089.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|81696526|sp|Q6GJ11|GRAR_STAAR RecName: Full=Response regulator protein graR; AltName: Full=Glycopeptide resistance-associated protein R gi|49241016|emb|CAG39686.1| putative response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257272347|gb|EEV04470.1| response regulator protein graR [Staphylococcus aureus subsp. aureus 55/2053] gi|257275639|gb|EEV07112.1| response regulator protein graR [Staphylococcus aureus subsp. aureus 65-1322] gi|257279274|gb|EEV09875.1| response regulator protein graR [Staphylococcus aureus subsp. aureus 68-397] gi|257282194|gb|EEV12329.1| response regulator protein graR [Staphylococcus aureus subsp. aureus E1410] gi|257284874|gb|EEV14993.1| response regulator protein graR [Staphylococcus aureus subsp. aureus M876] gi|282314282|gb|EFB44672.1| two-component system, OmpR family, response regulator [Staphylococcus aureus subsp. aureus C101] gi|282317583|gb|EFB47955.1| two-component system, OmpR family, response regulator [Staphylococcus aureus subsp. aureus C427] gi|282322528|gb|EFB52850.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus M899] gi|282325695|gb|EFB56003.1| response regulator protein graR [Staphylococcus aureus subsp. aureus WBG10049] gi|282331862|gb|EFB61373.1| two-component system OmpR family response regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282596206|gb|EFC01167.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus C160] gi|283790910|gb|EFC29725.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus A017934/97] gi|290921038|gb|EFD98099.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus M1015] gi|291095547|gb|EFE25808.1| two-component system, OmpR family, response regulator [Staphylococcus aureus subsp. aureus 58-424] gi|291467586|gb|EFF10101.1| two-component system, OmpR family, response regulator [Staphylococcus aureus subsp. aureus M809] gi|297576749|gb|EFH95464.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|312438920|gb|ADQ77991.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315194029|gb|EFU24423.1| putative response regulator protein [Staphylococcus aureus subsp. aureus CGS00] Length = 224 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 84/160 (52%), Gaps = 9/160 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121 R +R S VP++ +S + + + G DD + KP + ++A++ AIYRR+ Sbjct: 64 RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R T V +D +G + L + E ILE L+ + + V++ I +A++ Sbjct: 124 EEKRTLTWQDAVIDLSKDSIQKGDQTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 182 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218 DEA V +N + ++++LRKKL +++G D +++K GY Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKL-SEIGMDSAIETKVGKGY 220 >gi|15832141|ref|NP_310914.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H7 str. Sakai] gi|168750408|ref|ZP_02775430.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4113] gi|168757981|ref|ZP_02782988.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4401] gi|168761825|ref|ZP_02786832.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4501] gi|168769836|ref|ZP_02794843.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4486] gi|168775469|ref|ZP_02800476.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4196] gi|168782366|ref|ZP_02807373.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4076] gi|168788752|ref|ZP_02813759.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC869] gi|168799035|ref|ZP_02824042.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC508] gi|195938273|ref|ZP_03083655.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H7 str. EC4024] gi|208806650|ref|ZP_03248987.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4206] gi|208817189|ref|ZP_03258281.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4045] gi|208820121|ref|ZP_03260441.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4042] gi|209398758|ref|YP_002271322.1| transcriptional regulatory protein baeR [Escherichia coli O157:H7 str. EC4115] gi|217329588|ref|ZP_03445667.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. TW14588] gi|254793864|ref|YP_003078701.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H7 str. TW14359] gi|261225071|ref|ZP_05939352.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli O157:H7 str. FRIK2000] gi|261257583|ref|ZP_05950116.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli O157:H7 str. FRIK966] gi|13362356|dbj|BAB36310.1| transcriptional response regulatory protein [Escherichia coli O157:H7 str. Sakai] gi|187768926|gb|EDU32770.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4196] gi|188015386|gb|EDU53508.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4113] gi|189000071|gb|EDU69057.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4076] gi|189355122|gb|EDU73541.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4401] gi|189361284|gb|EDU79703.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4486] gi|189367779|gb|EDU86195.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4501] gi|189371573|gb|EDU89989.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC869] gi|189378506|gb|EDU96922.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC508] gi|208726451|gb|EDZ76052.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4206] gi|208730808|gb|EDZ79498.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4045] gi|208740244|gb|EDZ87926.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4042] gi|209160158|gb|ACI37591.1| transcriptional regulatory protein baeR [Escherichia coli O157:H7 str. EC4115] gi|209747942|gb|ACI72278.1| transcriptional response regulatory protein [Escherichia coli] gi|209747944|gb|ACI72279.1| transcriptional response regulatory protein [Escherichia coli] gi|209747946|gb|ACI72280.1| transcriptional response regulatory protein [Escherichia coli] gi|217317356|gb|EEC25785.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. TW14588] gi|254593264|gb|ACT72625.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli O157:H7 str. TW14359] gi|320191754|gb|EFW66402.1| Response regulator BaeR [Escherichia coli O157:H7 str. EC1212] gi|320641378|gb|EFX10833.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H7 str. G5101] gi|320646748|gb|EFX15635.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H- str. 493-89] gi|320652025|gb|EFX20378.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H- str. H 2687] gi|320668107|gb|EFX34986.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H7 str. LSU-61] gi|326338436|gb|EGD62264.1| Response regulator BaeR [Escherichia coli O157:H7 str. 1044] gi|326347041|gb|EGD70774.1| Response regulator BaeR [Escherichia coli O157:H7 str. 1125] Length = 240 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167 I RR K + AE+ P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|15826987|ref|NP_301250.1| two-component response regulator [Mycobacterium leprae TN] gi|221229465|ref|YP_002502881.1| putative two-component response regulator [Mycobacterium leprae Br4923] gi|81856515|sp|Q9CD68|MPRA_MYCLE RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|13092534|emb|CAC29682.1| putative two-component response regulator [Mycobacterium leprae] gi|219932572|emb|CAR70267.1| putative two-component response regulator [Mycobacterium leprae Br4923] Length = 228 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 97/200 (48%), Gaps = 21/200 (10%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R+L +GY +DGV E L+ AR+ A+ ++ LE+ R + Sbjct: 18 RSLSFNGYSVELANDGV-----------EALEMVARDRPDALVLDVMMPRLDGLEVCRQL 66 Query: 68 RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R+ +P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR K ++ A Sbjct: 67 RSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRTK-PDDAA 125 Query: 127 ETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E+ + FSD V EV L R E +LE L+AN + + +++I ++G Sbjct: 126 ESVAMS-FSDLTLDPVTREVARGQRWISLTRTEFALLEMLIANPRRVLTRSRILEEVWG- 183 Query: 181 FDEAVEENVVESHISKLRKK 200 FD N +E ++ LR+K Sbjct: 184 FDFPTSGNALEVYVGYLRRK 203 >gi|322807733|emb|CBZ05308.1| putative response regulator ArlR [Clostridium botulinum H04402 065] Length = 227 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 3/162 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR S VP+I ++ + + D G +D + KP E+LAR+ R Sbjct: 63 IEVCRRIRQFSCVPIIMLTTKSGVSDKVLGLDVGANDYLTKPFAIEELLARIRVYGREKL 122 Query: 121 VSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V + E + D + +V G L ++E +LE L+ N+ + + ++ ++ Sbjct: 123 VKSKFDEVKVKEIVMDNKTHQVWRSGREIELTKKEYDLLEKLLINKNIVLTRERLIEKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D + NVV+ I LR K+ N + + R +GY I Sbjct: 183 G-YDYVGDTNVVDVFIRYLRSKIDNDSKEKLITTIRGVGYVI 223 >gi|300724027|ref|YP_003713342.1| transcriptional regulatory protein tctD [Xenorhabdus nematophila ATCC 19061] gi|297630559|emb|CBJ91224.1| Transcriptional regulatory protein tctD [Xenorhabdus nematophila ATCC 19061] Length = 221 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 7/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L R+ + +P++ ++ + + +SG DD + KP +E+ AR+ A+ RR + Sbjct: 63 LLRLRKRGQNLPVLLLTAKSGVTDRVKGLNSGADDYLTKPFDFQELEARIRALLRRGSGI 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + G + V+ D + L RE +L L RG+ V+K Q+F ++ L Sbjct: 123 SQENLKFGSL-VYEDDGYFLLNNVPLALTPRELSVLTTLFLRRGRPVSKQQLFEQVFSLS 181 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 D+A ++ +E ++ +LRKKL N +G + + R LGY ++ Sbjct: 182 DDANPQS-IELYVHRLRKKLLNSDVG---IGTLRGLGYRLE 218 >gi|269217413|ref|ZP_06161267.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848 str. F0332] gi|269213139|gb|EEZ79479.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848 str. F0332] Length = 246 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 83/163 (50%), Gaps = 16/163 (9%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128 +++P++ ++ ++ + G DD + KP E++AR+ A+ RR S+ A Sbjct: 79 AELPVLFLTARDDVKDKIQGLTVGGDDYITKPFSLEEVVARIRAVLRRTHPSDADAAVLT 138 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + + + D G++ L E ++L YL+ N + V+K QI ++ ++ E Sbjct: 139 YGDLELNEETYDVRRAGQIVELSPTEFKLLRYLLINAERVVSKMQILDHVWD-YNWNGEV 197 Query: 188 NVVESHISKLRKKLRN--KLGF-DP---------VDSKRFLGY 218 ++VES+IS LR+K+ + LG DP + +KR +GY Sbjct: 198 SIVESYISYLRRKIDSAEALGITDPEEAKAIVPLIHTKRGIGY 240 >gi|255531237|ref|YP_003091609.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255344221|gb|ACU03547.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 224 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 14/156 (8%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 ++ ++ +S SL L+ D G DD + KP E+ AR+ A+YRR + G Sbjct: 71 AETGIVILSARNSLSDKLEGLDLGADDYLTKPFFLEELSARINALYRR------KTLRGT 124 Query: 131 IRVFSDGRDPE-------VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFD 182 + + D E GE L ++E +L Y + N+ + ++K I ++G FD Sbjct: 125 VEILFDDFTIEPLAKLFFYLGEPVSLTKKEFEMLVYFVVNKNRVLSKASISEHLWGDHFD 184 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + V + + H++ LRKKL G + + +GY Sbjct: 185 QHVNFDTLYMHLTNLRKKLTRLSGKHYIKTVYGIGY 220 >gi|148260824|ref|YP_001234951.1| two component transcriptional regulator [Acidiphilium cryptum JF-5] gi|326404218|ref|YP_004284300.1| cell cycle response regulator CtrA [Acidiphilium multivorum AIU301] gi|146402505|gb|ABQ31032.1| two component transcriptional regulator, winged helix family [Acidiphilium cryptum JF-5] gi|325051080|dbj|BAJ81418.1| cell cycle response regulator CtrA [Acidiphilium multivorum AIU301] Length = 250 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 3/162 (1%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +EL R +R A + P++ ++ S T L ++GVDD++ I H EI RV RR Sbjct: 60 IELIRRLRLAGLRCPIMAVAHLLSEATRLRILEAGVDDLIVSAISHEEIFLRVQNQVRRS 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ G + + + + V L ++E +I+E L +G ++K I +Y Sbjct: 120 RGFQSSSLAVGNVEINMNAKKIFVSQTEIGLTKKEYQIVEILALRKGCVLSKEAILDHLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G DE +++ I K+RKKL D + + GY I Sbjct: 180 GGLDEP-NPKIIDVFICKIRKKLLAAGADDLIQTNWGRGYMI 220 >gi|119776666|ref|YP_929406.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119769166|gb|ABM01737.1| two component transcriptional regulator, winged helix family [Shewanella amazonensis SB2B] Length = 225 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 80/153 (52%), Gaps = 7/153 (4%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETG 129 Q P++ +S ++ + SG DD + KP E+L R + R + + + G Sbjct: 72 QTPVLILSALSNVDERVKGLRSGGDDYMTKPFAFSELLVRAEILVSRGQTAPVQTHLQAG 131 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 P+ + R+ + G L +E ++L+YLM + + +++T +F A++ FD N Sbjct: 132 PLEMELLTRNVTLDGHELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVWDYHFDPRT--N 189 Query: 189 VVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 V++ HI+KLR+K +LG+ + +++ R GY + Sbjct: 190 VIDVHIAKLRRKF-EELGYGELIETVRGAGYRL 221 >gi|328477647|gb|EGF47686.1| two-component response regulator [Lactobacillus rhamnosus MTCC 5462] Length = 194 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 11/153 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 38 LEVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTS 97 Query: 121 VSN---------NRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 +N NR E G + + D +GE L RE +L YL + G+ + + Sbjct: 98 SANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTR 157 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ + +LR+K+ + Sbjct: 158 EHLLQTVWG-YDYFGDVRTVDVTVRRLREKIED 189 >gi|304412429|ref|ZP_07394036.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307305772|ref|ZP_07585518.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|304349264|gb|EFM13675.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306911265|gb|EFN41691.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] Length = 229 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 85/168 (50%), Gaps = 14/168 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 + L + IR H +VP++ ++ + + ++G +D ++KP RE++AR+ + R L Sbjct: 62 ISLLQTIRQHDKVPVLILTARDQEEEKIRLLEAGANDYLSKPFGIRELIARIKVLVRDLV 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + G +++ + + L ++E ++E LM++ G+ V +T++ I Sbjct: 122 DEPALSDVLQFGALKLQKSTHQLWLDQQEIALTKKEFALIETLMSHPGQLVKQTELLRDI 181 Query: 178 YGLFDEAVEENVVESH-----ISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G E + +SH IS+LRKKL + + ++ LGY + Sbjct: 182 WG------ETHTDDSHYLRILISQLRKKLNDSTEQQLIKTEAGLGYRL 223 >gi|296156388|ref|ZP_06839226.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295892987|gb|EFG72767.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 268 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 82/172 (47%), Gaps = 13/172 (7%) Query: 53 LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L+ G LE+ R RA ++ P+I S S + + G DD + KP E++AR Sbjct: 76 LMLPGVDGLEICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVAR 135 Query: 112 VAAIYRRLK--VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANR 164 V A+ RR+ ++R E G +R+ DP G+ L RE +L Y + Sbjct: 136 VKALLRRVDALAKDSRIEAGSLRLAGLSIDPLTREAAADGKPIELTPREFDLLYYFAQHP 195 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 GK ++ + +A++G E E+ V +HI++LR K+ DP +R L Sbjct: 196 GKVFSRMDLLNAVWGYQHEGY-EHTVNTHINRLRAKIEA----DPAQPERIL 242 >gi|300771171|ref|ZP_07081047.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300761841|gb|EFK58661.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 223 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 4/139 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-R 125 +R Q I IS S+ + D G DD + KP H E+ AR+ A+ RR +++ N Sbjct: 66 LRGKEQQHTIIISARDSIDDKIRGLDLGADDYLTKPFHLSELNARIKAVLRRKQLAGNPV 125 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + +++ D R V + R+E + + + N+ K V KT + ++G D + Sbjct: 126 VQLNNLQINYDTRSICVNDQDLHFSRKEFDVFSFFVLNKNKLVTKTALAEHVWG-DDSDM 184 Query: 186 EENV--VESHISKLRKKLR 202 +N+ + S I +RKKL+ Sbjct: 185 ADNLDFIYSQIKNIRKKLK 203 >gi|229103829|ref|ZP_04234509.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228679705|gb|EEL33902.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 228 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 78/143 (54%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121 IR + +P+I +S + SG DD ++KP + E++ARV + RR K + Sbjct: 68 IRENRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTSI 127 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N++ E G + V +D V+G+ L +E ILE L+ N+G ++ +I+ A++ Sbjct: 128 EHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLVRNKGIVLSVAKIYEAVWK 187 Query: 180 -LFDEAVEENVVESHISKLRKKL 201 +F ++ +N V HI+K+R K+ Sbjct: 188 EVFYKS--DNTVMVHITKIRDKI 208 >gi|190891005|ref|YP_001977547.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190696284|gb|ACE90369.1| two-component response regulator protein [Rhizobium etli CIAT 652] Length = 251 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 5/156 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 R P++ +S + + +G DD + KP E+LARV + RR Sbjct: 94 RKGVHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPEQDVV 153 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 G + + + G+ PL RE R+LEYLM N G+ V +T + ++ FD Sbjct: 154 YRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP- 212 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ H+S+LR K+ + + R GY I Sbjct: 213 -QTNVIDVHVSRLRSKIEKDFSQPLLKTIRGAGYMI 247 >gi|73537882|ref|YP_298249.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Ralstonia eutropha JMP134] gi|72121219|gb|AAZ63405.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Ralstonia eutropha JMP134] Length = 231 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 8/154 (5%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127 AH VP++ ++ S ++ D+G DD + KP E+ AR+ A+ RR + Sbjct: 76 AHVNVPVLILTARDSWTEKVEGIDAGADDYLAKPFRMEELQARIRALIRRAHGMPAPELS 135 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 G +++ V G L E ++L+YLM + G V+K+ + IY FD + Sbjct: 136 CGSVQLNPRAGTVTVDGAAVVLTAHEFKVLDYLMHHPGAIVSKSTLTEHIYAQDFDR--D 193 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N +E + +LR+ KLG D +++ R GY + Sbjct: 194 SNTIEVFVGRLRR----KLGVDVIETVRGQGYRL 223 >gi|313497996|gb|ADR59362.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1] Length = 231 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 14/164 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G++VL R +R S VP++ +S S +D D G +D V KP +E LARV A+ Sbjct: 63 GQQVL---RELREWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALL 119 Query: 117 RRLKVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R++ + A GP+ V R ++G L R+E +L L + G+ + + Q+ Sbjct: 120 RQVPQAGGSEVAASFGPLTVDFAFRRVTLEGVEVALTRKEYALLALLAGHPGRVITQQQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216 I+G + ++H ++ LR KLG DP + RF+ Sbjct: 180 LKDIWG------PTHAEDTHYLRIVVGHLRQKLGDDPT-APRFI 216 >gi|332654461|ref|ZP_08420204.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16] gi|332516425|gb|EGJ46031.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16] Length = 233 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 5/139 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122 IR S P+I ++ + + +SG DD + KP +E+LAR+ A+ RR + Sbjct: 68 IREESATPVIMLTAKGETEDKVTGLESGADDYIVKPFEMKEVLARIHAVMRRTGQEEEQE 127 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N + + + D + V G+ P +E +L +L + + + Q+ ++G FD Sbjct: 128 NKKLSFDKLVINLDSYELLVDGKRVDTPPKELELLYHLASAPNRVFTRNQLLDEVWG-FD 186 Query: 183 EAVEENVVESHISKLRKKL 201 + V+ HI +LR+KL Sbjct: 187 YFGDSRTVDVHIKRLREKL 205 >gi|255654863|ref|ZP_05400272.1| two-component response regulator [Clostridium difficile QCD-23m63] Length = 230 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 17/177 (9%) Query: 42 AREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101 +++D + ++ G E IR +S +P++ ++ + + +G DD + K Sbjct: 42 SKQDYQLVVLDVMMPGMDGFETMEQIRKYSSIPILMLTSKNDNYSKVHGLRAGADDYLTK 101 Query: 102 PIHHREILARVAAIYRRLKVSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERR 155 P E ARV ++ RR N + E F D GE LP +E Sbjct: 102 PFEIAEFTARVLSLIRRYTRFNPKNEESQQLSFKGLLIDLDQHTVTTNGETMLLPPKEFG 161 Query: 156 ILEYLMANRGKRVAKTQIFSAIYG---LFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +L Y ++GK + K QI+ A++G ++D +S+I + +LR K+ DP Sbjct: 162 VLLYCARHQGKILTKQQIYEAVWGEPYVYD--------DSNIMAIISRLRKKIELDP 210 >gi|307152178|ref|YP_003887562.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306982406|gb|ADN14287.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 226 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 16/139 (11%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVS 122 Q P++ I+ ++ + D+G DD + KP +E+ ARV A+ RR L+ Sbjct: 71 CQTPILMITARDTVTDRVLGLDAGADDYLVKPFALQELSARVRALMRRGNPSLPPVLEWG 130 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N R + RV+ Q E PL +E ++LE+ + + + +++Q+ ++ F+ Sbjct: 131 NIRLDPSSCRVY-------YQHEEIPLSPKEYKLLEFFLRHERRVFSRSQLLEHLWP-FE 182 Query: 183 EAVEENVVESHISKLRKKL 201 EE V++HI LR+KL Sbjct: 183 RLPEEATVKAHIRSLRQKL 201 >gi|167839126|ref|ZP_02465903.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43] Length = 220 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 75/162 (46%), Gaps = 12/162 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + R +P+I ++ +L + D G DD + KP E+LAR+ A+ RR Sbjct: 63 LAALRRRDDALPVIVVTARDALPDRIAGLDCGADDYLIKPFALEELLARIRAVNRR---Q 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 RA+T G +R+ E L +E +L LM G +++ Q +Y Sbjct: 120 AGRAQTVLAVGALRLDPARHQVWRGDEEVALSPKEFVLLHELMREPGAVISREQFEERLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E +E N V+ HI LRK KLG D + + R +GY I Sbjct: 180 S-WGEEIESNAVQVHIHNLRK----KLGHDTILTVRGVGYRI 216 >gi|170738040|ref|YP_001779300.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169820228|gb|ACA94810.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 224 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 10/154 (6%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128 P++ +S + ++ +G DD + KP E+ AR+ + RR + R ET Sbjct: 74 TPVLVMSAMSGVDQRIEGLRAGGDDYLVKPFSLEEMCARIDVLIRR-RPRGARVETVLRA 132 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187 G + + R + L E R+LE++M N G+ + +T IF A++G FD Sbjct: 133 GELALDLVRRRATLGARELTLLPTESRVLEFMMRNAGRVLTRTMIFEAVWGCRFDPGT-- 190 Query: 188 NVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 N+++ HI +LRKK+ N+ G P + + R GY + Sbjct: 191 NLIDVHIGRLRKKV-NRPGAAPLIRTIRGSGYML 223 >gi|31873070|gb|AAP60033.1| NisR [Cloning vector pMSP3535] gi|34558748|gb|AAQ75105.1| NisR [Shuttle vector pMSP3535-FT] gi|34558755|gb|AAQ75111.1| NisR [Shuttle vector pMSP3535-RT] gi|222478239|gb|ACM62696.1| NisR [Shuttle vector pMSP3535H3] Length = 212 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 12/170 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ + IR P+I +S + + ++ G DD + KP ++++A+V A +R + Sbjct: 46 EICKRIRREISTPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKREER 105 Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S R + GPI + + R V G+ PL RE ILE L K + I Sbjct: 106 NKHAVHVFSEIRRDLGPITFYLEERRVCVNGQTIPLTCREYDILELLSQRTSKVYTREDI 165 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + +Y + A+ ++ E +I ++R K +P+ + R LGY W+ Sbjct: 166 YDDVYDEYSNALFRSISE-YIYQIRSKF-APYDINPIKTVRGLGYQ--WH 211 >gi|327439249|dbj|BAK15614.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 236 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 10/117 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAET-------GPIRVFSDGRDPEVQG 144 G DD + KP RE++ARV A+ RR V E+ G ++VF + + + Sbjct: 96 GADDYMTKPFSPREVIARVKAVLRRFSGPVVEETVESSEVVYTFGNLKVFPERFEAFIDD 155 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E +E +L YL+ N+ + + + Q+ SA++ +D A + +V+ HIS LR K+ Sbjct: 156 ESLEFTPKEFELLVYLLENKNRVLTRDQLLSAVWN-YDFAGDTRIVDVHISHLRDKI 211 >gi|307706668|ref|ZP_07643474.1| response regulator [Streptococcus mitis SK321] gi|307617912|gb|EFN97073.1| response regulator [Streptococcus mitis SK321] Length = 235 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 12/154 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ + IR S VP+I +S S + + G DD V KP +RE+ ARV A+ RR Sbjct: 61 LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120 Query: 119 -LKVSNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + V N + + G + + D + GE L RE +L +L ++ G+ + Sbjct: 121 LVSVDNQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ I +LR+K+ + Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 213 >gi|307708758|ref|ZP_07645220.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261] gi|307615124|gb|EFN94335.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261] Length = 235 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 12/154 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ + IR S VP+I +S S + + G DD V KP +RE+ ARV A+ RR Sbjct: 61 LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120 Query: 119 -LKVSNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + V N + + G + + D + GE L RE +L +L ++ G+ + Sbjct: 121 LVSVDNQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ I +LR+K+ + Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 213 >gi|294788403|ref|ZP_06753646.1| DNA-binding response regulator CpxR [Simonsiella muelleri ATCC 29453] gi|294483834|gb|EFG31518.1| DNA-binding response regulator CpxR [Simonsiella muelleri ATCC 29453] Length = 228 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 25/198 (12%) Query: 34 FEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDS 93 +E L S DV +++ + G L++ + +RA S++P+I ++ + + Sbjct: 38 VKEILHSGNSYDVVILDSMMPKMGG--LDVLKTVRAQSKIPIIMLTAKGDDIDRIIGLEM 95 Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSN-------NRAETGPIRVFSDGRDPEVQGEV 146 G DD V KP RE+LAR+ AI RR + +N N + ++ R + Sbjct: 96 GADDYVPKPCQPRELLARINAILRRAQHNNGDSNNAANSLSVSNVTLYPAKRQASIGDTP 155 Query: 147 FPLPRRERRILEYLMANRGKRVAK-TQIFSAI---YGLFDEAVEENVVESHISKLRKKLR 202 L E +LE LM + G+ V+K T A+ FD + ++ HIS +R KL Sbjct: 156 LELTSTEFNLLEALMRHAGQVVSKETLSLEALDRKLAKFDRS-----IDVHISSIRHKL- 209 Query: 203 NKLGFDP--VDSKRFLGY 218 DP + + R LGY Sbjct: 210 ----GDPSLIQTVRGLGY 223 >gi|196247939|ref|ZP_03146641.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|196212723|gb|EDY07480.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 224 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 80/161 (49%), Gaps = 2/161 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R + VP++ ++ + + F G DD + KP E++ARV A+ +R ++ Sbjct: 62 ELCRELRDYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLKRYRI 121 Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ + G + + + + PLP +E +L L + GK + ++ I+G Sbjct: 122 ATSQIVQIGHLSLNRKTYECRLGDVEVPLPPKEFELLFQLASYPGKTFTRDELIEQIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D +E V+ HI +LR++ + + R LGY ++ Sbjct: 181 YDYEGDERTVDVHIKRLRERFAQPNAPFFIRTIRGLGYRLE 221 >gi|109453374|gb|ABG34167.1| PhoP [Salmonella bongori] Length = 213 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 99/212 (46%), Gaps = 5/212 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ ++ + D++ ++ L E L Sbjct: 4 LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R+ +P++ ++ Q ++ SG D+ V KP H E++AR+ A+ RR Sbjct: 62 LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADEYVTKPFHIEEVMARMQALMRRNSG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P +V R+ V EV L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E E + ++ + +LRKK++ + D + + Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAQYPHDVITT 212 >gi|153811126|ref|ZP_01963794.1| hypothetical protein RUMOBE_01517 [Ruminococcus obeum ATCC 29174] gi|149832624|gb|EDM87708.1| hypothetical protein RUMOBE_01517 [Ruminococcus obeum ATCC 29174] Length = 230 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------L 119 IR + +P+I +S + + G DD V KP + E++ARV + RR Sbjct: 67 IREKNALPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQLGAMT 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N ETG + + D ++ V GE L E RIL +L+ N+G+ + QI+ I+ Sbjct: 127 EKKENIYETGGLMIDDDRKEVTVDGESVKLTPIEYRILLFLVQNQGRVFSINQIYENIWN 186 Query: 180 LFDEAV-EENVVESHISKLRKKL 201 +EA+ +N V HI +R+K+ Sbjct: 187 --EEAIAADNTVAVHIRHIREKI 207 >gi|332187583|ref|ZP_08389319.1| response regulator [Sphingomonas sp. S17] gi|332012331|gb|EGI54400.1| response regulator [Sphingomonas sp. S17] Length = 229 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 13/155 (8%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133 P++ +S S + + SG DD + KP E+LARV + RR V+ N +T ++ Sbjct: 76 PVLILSALSSPEDRVAGLTSGSDDYLTKPFVFAELLARVRLLIRRGSVTTNAPQT---KL 132 Query: 134 FSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 D + ++ G+ L RE R+LEYL+ + + V +T + ++ FD Sbjct: 133 VCDDLEMDLLAHRVRRAGKPIDLQPREYRLLEYLLQHVDQVVTRTMLLEGVWDFHFDP-- 190 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NV + HIS+LRKK+ + + R GY + Sbjct: 191 NTNVTDVHISRLRKKIDEGFARPLLHTVRGSGYKL 225 >gi|325676168|ref|ZP_08155849.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325553078|gb|EGD22759.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 244 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 89/188 (47%), Gaps = 11/188 (5%) Query: 23 GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII----RAHSQVPLIGI 78 G+ L GF L + + +A +A ++ VL+ ++ RA ++VP+ + Sbjct: 34 GLRLSGFTVLTASDGAVALRVVADAAPDAVVLDMNMPVLDGTGVVTALRRAGNEVPICVL 93 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET------GPIR 132 S S+ + +SG DD + KP E++AR+ A+ RR V+ +T GP+ Sbjct: 94 SARSSVDDRIAGLESGADDYLVKPFVLAELVARIRAMLRRRSVAVAATDTDPPIVVGPLS 153 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 V GR + L +RE + E L N G +++ ++ ++G +D + NVV+ Sbjct: 154 VDLAGRRVWLGDTEIALTKREFELTEVLARNAGVVLSRERLLDLVWG-YDFVADTNVVDV 212 Query: 193 HISKLRKK 200 + LR+K Sbjct: 213 FVGYLRRK 220 >gi|323525961|ref|YP_004228114.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323382963|gb|ADX55054.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 224 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 103/228 (45%), Gaps = 23/228 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS--------AREDVSAIEAFL 53 +L++D L+ DG A G+ +GF +W+Q A+ +A+ Sbjct: 3 ILLVEDDPLLGDGIRA-----GLRQQGFQV----DWVQDGEAAQRELRAQPYAAAVLDLG 53 Query: 54 IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 + + + + L + R P++ ++ ++ + D G DD V KP+ E+ AR+ Sbjct: 54 LPRMDGIDVLRSVRRVGVDFPILVLTARDAVPDRVRGLDMGADDYVVKPVDLEELGARLR 113 Query: 114 AIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ RR R E + + R G L RE +L LM N G+ +++ Q Sbjct: 114 ALVRRAHGRPRERLEAHDVVLDPASRMVYRAGVPVTLSSREFDLLHVLMLNAGRVLSREQ 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I +Y + + VE N VE H+ +LR+KLG D + + R +GY + Sbjct: 174 IEQHLYS-WGQEVESNAVEVHV----HRLRSKLGSDVIRTVRGIGYVL 216 >gi|260777964|ref|ZP_05886857.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] gi|260605977|gb|EEX32262.1| transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] Length = 216 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 105/229 (45%), Gaps = 29/229 (12%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI------G 55 +LI+D L+ G ++LF +G W+Q + + + +A L+ Sbjct: 4 LLLIEDDKLLGQGLVSLFESNGYHCV---------WVQETRKVEQLWFKADLVILDRQLS 54 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ + LP + + VP+I ++ + ++ +G D V KP H E+LARV + Sbjct: 55 DGDSLKHLPHWLLLKA-VPVIILTAKIDTEQKVEGLMAGAKDYVTKPFSHDELLARVVSQ 113 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R L S G I + R+ ++ L +E ++L L+ N+G+ + ++ + Sbjct: 114 LRPLGAS--YLCYGGIELHLAKREAMFNDQLVTLKPKEFQLLVLLIQNQGRVFHRDELLN 171 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV---DSKRFLGYSID 221 ++G + +++HI +LR+KL PV ++ R +GY ++ Sbjct: 172 KVWG-YQAFPSTRTIDNHILRLRQKL-------PVLNIETHRGVGYRLN 212 >gi|259502101|ref|ZP_05745003.1| DNA-binding response regulator [Lactobacillus antri DSM 16041] gi|312868802|ref|ZP_07728991.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus oris PB013-T2-3] gi|259169914|gb|EEW54409.1| DNA-binding response regulator [Lactobacillus antri DSM 16041] gi|311095645|gb|EFQ53900.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus oris PB013-T2-3] Length = 235 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 88/202 (43%), Gaps = 20/202 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY + DG EE L+ ED I L+ LE+ + +RA Sbjct: 22 LEKEGYEVVVAFDG-----------EEALEKVEAEDPDLIILDLMLPKVDGLEVAKRVRA 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-- 127 P+I ++ S + + G DD V KP +RE++ARV A RR + AE Sbjct: 71 KHTTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRREATAQAPAEED 130 Query: 128 ------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G I + + +GE L RE +L YL + G+ + + + ++G + Sbjct: 131 KNTDIKVGDITIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHLLQTVWG-Y 189 Query: 182 DEAVEENVVESHISKLRKKLRN 203 D + V+ + +LR+K+ + Sbjct: 190 DYFGDVRTVDVTVRRLREKIED 211 >gi|299821888|ref|ZP_07053776.1| DNA-binding response regulator [Listeria grayi DSM 20601] gi|299817553|gb|EFI84789.1| DNA-binding response regulator [Listeria grayi DSM 20601] Length = 235 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 11/118 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----------TGPIRVFSDGRDPEVQ 143 G DD + KP RE++AR+ AI RR + AE G + +F + + Sbjct: 95 GADDYLTKPFSPREVVARIKAIMRRTESRKEAAEETESPTAELTIGDLHIFPESYEAYRG 154 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ L +E +L +L N+GK ++ Q+ A++ +D E +V+ H+S LR+K+ Sbjct: 155 DQLLELTPKEFELLLFLATNKGKVFSRDQLLDAVWN-YDYIGETRIVDVHVSHLREKV 211 >gi|113868353|ref|YP_726842.1| response regulator [Ralstonia eutropha H16] gi|113527129|emb|CAJ93474.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 224 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 76/140 (54%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L R+ + + +P++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 63 LRRLRQRRNPLPVLILTAHGSVEDRVRGLDLGADDYLAKPFDLSELEARARALIRRAHGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + GP+ S R + GE+ PL RER +LE L+ G+ V K + I+G+ Sbjct: 123 ESTQIACGPLHYDSVSRAVLLHGELLPLTGRERAVLEVLLLRDGRAVNKAALSEKIFGI- 181 Query: 182 DEAVEENVVESHISKLRKKL 201 DE+V + +E ++ +LRKKL Sbjct: 182 DESVNPDAIEIYVHRLRKKL 201 >gi|332829361|gb|EGK02015.1| hypothetical protein HMPREF9455_00137 [Dysgonomonas gadei ATCC BAA-286] Length = 224 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 4/151 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G K+LE + +A I IS SL+ + D G DD + KP H E+ AR+ A Sbjct: 57 GSGLKILEEMK--KAGITGNTIIISAKNSLEDKITGLDLGADDYLTKPFHLAELHARIKA 114 Query: 115 IYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR ++ +N + G + V D + + L R+E IL + N K + K + Sbjct: 115 VLRRKQLDGSNVLKLGNVSVDFDKHLVYIDDQELRLNRKEFDILSFFAMNTNKLITKEVL 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRN 203 ++G D A + V + I LRKKL++ Sbjct: 175 AEHVWGDNIDSADNFDFVYAQIKNLRKKLKD 205 >gi|312891526|ref|ZP_07751040.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311295989|gb|EFQ73144.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 226 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 9/153 (5%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ + +RA + +P++ ++ ++ + +G DD + KP H E+LAR+ A+ RR Sbjct: 61 IDVCKHVRATNPHIPILMLTALGAVDDKVAGLKAGADDYLVKPFHFIELLARIEALLRRQ 120 Query: 120 KVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + AE + + + G+ G+ L +E +LE M N+GK + + I Sbjct: 121 TMEKVDAEILKFDDLELDTSGKTATRAGKTIVLTAKEYALLELFMRNQGKILTRQYIAER 180 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 ++G+ FD N ++ ++S LR K+ GFD Sbjct: 181 VWGIGFDTGT--NFIDVYMSFLRNKIEK--GFD 209 >gi|306842746|ref|ZP_07475388.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. BO2] gi|306287090|gb|EFM58595.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. BO2] Length = 181 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 83/175 (47%), Gaps = 20/175 (11%) Query: 57 GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R +R + +P+I ++ + G DD V KP E+LARV Sbjct: 13 GVSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVK 72 Query: 114 AIYRR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 A+ RR LKV + + RV+ ++ EV L E R+LEY M + Sbjct: 73 AMLRRANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSP 125 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ +++Q+ ++G D V++ V+ H+ +LRK + DP+ + R GYS Sbjct: 126 GRVFSRSQLLDGVWGP-DIYVDDRTVDVHVGRLRKAINVGRAADPIRTVRGAGYS 179 >gi|296449610|ref|ZP_06891386.1| response regulator [Clostridium difficile NAP08] gi|296878070|ref|ZP_06902085.1| response regulator [Clostridium difficile NAP07] gi|296261546|gb|EFH08365.1| response regulator [Clostridium difficile NAP08] gi|296430823|gb|EFH16655.1| response regulator [Clostridium difficile NAP07] Length = 238 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 17/177 (9%) Query: 42 AREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101 +++D + ++ G E IR +S +P++ ++ + + +G DD + K Sbjct: 50 SKQDYQLVVLDVMMPGMDGFETMEQIRKYSSIPILMLTSKNDNYSKVHGLRAGADDYLTK 109 Query: 102 PIHHREILARVAAIYRRLKVSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERR 155 P E ARV ++ RR N + E F D GE LP +E Sbjct: 110 PFEIAEFTARVLSLIRRYTRFNPKNEESQQLSFKGLLIDLDQHTVTTNGETMLLPPKEFG 169 Query: 156 ILEYLMANRGKRVAKTQIFSAIYG---LFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +L Y ++GK + K QI+ A++G ++D +S+I + +LR K+ DP Sbjct: 170 VLLYCARHQGKILTKQQIYEAVWGEPYVYD--------DSNIMAIISRLRKKIELDP 218 >gi|326792137|ref|YP_004309958.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326542901|gb|ADZ84760.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 224 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 10/166 (6%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ + +R Q P+I ++ + + D G DD + KP E+LAR+ A+ RR Sbjct: 60 LEVLKQLREQKIQTPVILLTAKDEVSDRVKGLDHGADDYLTKPFATDELLARIRALGRRR 119 Query: 120 K--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++ I + + + L +E RILE+L+ + V+K ++ I Sbjct: 120 GELICDDTLHFEDISLNLSTYELSCGSKTVRLGLKEFRILEFLIRHGQHIVSKEELLEKI 179 Query: 178 YGLFDEAVEENVVESHISKLRKKL---RNKLGFDPVDSKRFLGYSI 220 +G FD E N VE +IS LRKKL +K+G V R +GY + Sbjct: 180 WG-FDSEAEYNHVEVYISFLRKKLSHIHSKVGIQTV---RGVGYRL 221 >gi|255524384|ref|ZP_05391341.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187507|ref|ZP_06855902.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255511941|gb|EET88224.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048029|gb|EFG87468.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 226 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 6/183 (3%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE---LPRIIRAHSQVPLIGISDYPS 83 EGFN L+ E + + +E ++ V++ + IR SQVP+I ++ Sbjct: 25 EGFNVLQAENGKDALKIFKENTVELVVLDIMMPVMDGWTTCKEIRKISQVPVIMLTAKAE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSDGRDPE 141 + + F+ G D+ V KP + ++A+V A+ +R N + + + + + Sbjct: 85 DEDQILGFELGTDNYVTKPFSPKLLVAKVKALLKRAYPDENNQDNFFDGLYINEKAHETK 144 Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + E L +E +L Y N+G +++ QI +++G+ D + V++HI +LR+KL Sbjct: 145 INDEDIYLSPKEFELLSYFAKNKGMVLSREQILDSVWGI-DYYGDLRTVDTHIKRLREKL 203 Query: 202 RNK 204 K Sbjct: 204 GEK 206 >gi|194017117|ref|ZP_03055729.1| response regulator [Bacillus pumilus ATCC 7061] gi|194010985|gb|EDW20555.1| response regulator [Bacillus pumilus ATCC 7061] Length = 258 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 19/148 (12%) Query: 65 RIIRAHSQVPLIGIS--DYPS-LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R+IR HS VP+I +S D+P+ + ++ G DD V KP H ++A+V+A+ RR V Sbjct: 94 RMIRHHSNVPIIFLSSRDHPADMVMSMQL---GADDFVQKPFHFDVLIAKVSAVLRR--V 148 Query: 122 SNNRAETGPIRVFSDGR-DPEV------QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + AE ++V+ D E GEV L + E IL+ L+ ++ V++ + Sbjct: 149 HDYNAEPASLKVWCGATIDLEKNTVTNDHGEV-ELTKNELFILKELIQHKNHIVSRESLI 207 Query: 175 SAIYGLFDEA-VEENVVESHISKLRKKL 201 A++ DE V +N + ++++LRKKL Sbjct: 208 QALWE--DERFVSDNTLTVNVNRLRKKL 233 >gi|149011938|ref|ZP_01833086.1| response regulator [Streptococcus pneumoniae SP19-BS75] gi|225857655|ref|YP_002739166.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] gi|147763893|gb|EDK70826.1| response regulator [Streptococcus pneumoniae SP19-BS75] gi|225725560|gb|ACO21412.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] Length = 235 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 11/120 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLK----------VSNNRAETGPIRVFSDGRDPEVQ 143 G DD + KP RE+LARV A+ RR K +++N G ++V+ + + Sbjct: 96 GADDYLTKPFSPRELLARVKAVLRRTKGKQEGDDSDNIADNSWLFGTLKVYPERHEVYKA 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ L +E +L YLM + + + ++ I+G +D E +V+ HI KLR+K+ + Sbjct: 156 NKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKIED 214 >gi|92115368|ref|YP_575296.1| two component transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91798458|gb|ABE60597.1| two component transcriptional regulator, winged helix family [Chromohalobacter salexigens DSM 3043] Length = 229 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 12/153 (7%) Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ A +++P+I ++ + ++G DD + KP RE++AR+ Sbjct: 59 GTSGIELARRLKRDTATAELPIILLTAKSEEDNKIQGLEAGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR + + P+ + DP G+ + E R+L++ M ++ + Sbjct: 119 AVLRR---TTPKGVEDPVEIEGLLLDPVSHRVSANGQALDVGPTEYRLLQFFMTHQERAY 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++Q+ ++G + VEE V+ HI +LRK L Sbjct: 176 TRSQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207 >gi|148546949|ref|YP_001267051.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148511007|gb|ABQ77867.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 231 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 14/164 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G++VL R +R S VP++ +S S +D D G +D V KP +E LARV A+ Sbjct: 63 GQQVL---RELREWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALL 119 Query: 117 RRLKVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R++ + A GP+ V R ++G L R+E +L L + G+ + + Q+ Sbjct: 120 RQVPQAGGSEVAASFGPLTVDFAFRRVTLEGLEVALTRKEYALLALLAGHPGRVITQQQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216 I+G + ++H ++ LR KLG DP + RF+ Sbjct: 180 LKDIWG------PTHAEDTHYLRIVVGHLRQKLGDDPT-APRFI 216 >gi|295108756|emb|CBL22709.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 222 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR SQVP+I IS + G DD + KP + A++ AI RR Sbjct: 67 IRRISQVPIIFISSAADNMNMVMAMSRGADDFIAKPFDMDVLTAKIQAILRRTYSFGTPG 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N E + G L + E RILE L+ + GK V++ + + ++ D Sbjct: 127 NVLEYKGALLNPPRCTLTWNGHDIALTKNELRILEILLEHAGKTVSRDALMTRLWE-SDS 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V++N + +I++LR+KL + D + +K+ LGY + Sbjct: 186 FVDDNTLTVNITRLRRKLEGEGLKDFIITKKGLGYMV 222 >gi|167746545|ref|ZP_02418672.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662] gi|317471367|ref|ZP_07930721.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167653505|gb|EDR97634.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662] gi|316901118|gb|EFV23078.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 228 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 8/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP+I ++ + + G DD V KP + E+ AR+ AI RR Sbjct: 62 EVCQAIREFSTVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEVKARIKAILRRSVS 121 Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 AET + ++ D R + G+ L +E +LE L+ + K ++ + + Sbjct: 122 HAAPAETPKVIESRGLKIDCDSRRVHINGKEVNLTAKEFDLLELLVFHPNKVYSREDLLN 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 ++G +D + V+ HI +LR+K+ G D V +K +GY Sbjct: 182 TVWG-YDYPGDARTVDVHIRRLREKIEVNPGVPDYVHTKWGVGY 224 >gi|126463915|ref|YP_001045028.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|221369515|ref|YP_002520611.1| Two component transcriptional regulator, winged helix family precursor [Rhodobacter sphaeroides KD131] gi|332561170|ref|ZP_08415488.1| Two component transcriptional regulator, winged helix family precursor [Rhodobacter sphaeroides WS8N] gi|126105726|gb|ABN78256.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17029] gi|221162567|gb|ACM03538.1| Two component transcriptional regulator, winged helix family precursor [Rhodobacter sphaeroides KD131] gi|332274968|gb|EGJ20284.1| Two component transcriptional regulator, winged helix family precursor [Rhodobacter sphaeroides WS8N] Length = 220 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 14/224 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V+ DD + +D +AL G G +E E +L + D+ ++ L K + + Sbjct: 4 LVVEDDARIAQDLSVAL-GSAGFRVETAADGETAWFLGGTESYDLIVLDLGLP-KLDGLA 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R ++P++ ++ + ++ D+G DD + KP E++AR A+ RR Sbjct: 62 VLKRWRAEGVEIPVLVLTARGTWTERVEGIDAGADDYLPKPFRIEELVARARALVRR--- 118 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S RA G + + + + G L E R+L YLM +R + V T++ + Sbjct: 119 STGRAAPLQSVGRLALDMNRMTATLDGLPLGLAPLEFRLLAYLMLHRDRVVPPTELLEHL 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 YG ++A E N +E+ +++LR+ K+G + ++R GY ++ Sbjct: 179 YG-DNDAREANALEAVVARLRR----KVGRGVIGTRRGFGYQLE 217 >gi|15597853|ref|NP_251347.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107102178|ref|ZP_01366096.1| hypothetical protein PaerPA_01003228 [Pseudomonas aeruginosa PACS2] gi|116050644|ref|YP_790537.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218891181|ref|YP_002440047.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254235639|ref|ZP_04928962.1| hypothetical protein PACG_01571 [Pseudomonas aeruginosa C3719] gi|254241086|ref|ZP_04934408.1| hypothetical protein PA2G_01771 [Pseudomonas aeruginosa 2192] gi|296388882|ref|ZP_06878357.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313107697|ref|ZP_07793879.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|9948727|gb|AAG06045.1|AE004694_8 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115585865|gb|ABJ11880.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126167570|gb|EAZ53081.1| hypothetical protein PACG_01571 [Pseudomonas aeruginosa C3719] gi|126194464|gb|EAZ58527.1| hypothetical protein PA2G_01771 [Pseudomonas aeruginosa 2192] gi|218771406|emb|CAW27173.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] gi|310880381|gb|EFQ38975.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 223 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 7/148 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGP 130 P++ ++ S +D +G DD + KP H E+ R+ A+ RR N++ E Sbjct: 73 TPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAHGLANQSQLEAAG 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 +R+ + + G L E R+L Y M + G+ ++K + +Y E + NV+ Sbjct: 133 LRLDEQRQCVCLNGADVDLTAAEFRLLRYFMLHPGQVLSKGHLAEHLYDGETER-DSNVI 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E H++ LR+ KLG + ++++R GY Sbjct: 192 EVHVNHLRR----KLGREVIETRRGQGY 215 >gi|330816594|ref|YP_004360299.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] gi|327368987|gb|AEA60343.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] Length = 221 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 87/161 (54%), Gaps = 8/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L R+ + S P++ ++ ++ + G DD + KP +RE+ ARV A+ RR Sbjct: 63 LRRLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGL 180 +++ G + + R E+ G+ PL R+E +LE ++A+R +RV +K ++ + ++ Sbjct: 123 ASDVLRFGALSIDRSSRLAELDGQPLPLSRQEFALLE-ILASRPQRVFSKDELLNQLFS- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 F N VE +++++R+KL+ G D + + R +GY I Sbjct: 181 FGREPSANAVEQYVTRVRRKLQ---GSDVEIRTARGMGYQI 218 >gi|307547006|ref|YP_003899485.1| phosphate regulon transcriptional regulator PhoB [Halomonas elongata DSM 2581] gi|307219030|emb|CBV44300.1| phosphate regulon transcriptional regulatory protein PhoB [Halomonas elongata DSM 2581] Length = 229 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 12/153 (7%) Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ +++P+I ++ + D+G DD + KP RE++AR+ Sbjct: 59 GTSGIELARRLKREETTAEMPIIMLTAKSEEDNKIQGLDAGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR S P+ V DP V G + E R+L++ M ++ + Sbjct: 119 AVLRR---STPHGVEDPVEVDGLLLDPVSHRVSVDGNSLEVGPTEYRLLQFFMTHQERAY 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ ++G + VEE V+ HI +LRK L Sbjct: 176 TRGQLLDQVWG-GNVYVEERTVDVHIRRLRKAL 207 >gi|307328862|ref|ZP_07608032.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306885527|gb|EFN16543.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 245 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 8/163 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ R +P++ ++ +++ + +G DD V KP E++AR+ + RR + Sbjct: 82 LGRLRRELPDIPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSGAA 141 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R+E+ G + + D + G L E +L YLM N + ++K QI ++ Sbjct: 142 AARSESVLAVGDLILDEDSHEVSRGGREIHLTATEFELLRYLMRNPRRVLSKAQILDRVW 201 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +D + NVVE +IS LR+K+ G P + ++R GY I Sbjct: 202 S-YDFGGQANVVELYISYLRRKI--DAGRSPMIHTRRGAGYLI 241 >gi|297625282|ref|YP_003687045.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921047|emb|CBL55585.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 231 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 87/167 (52%), Gaps = 10/167 (5%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE +++RA+ + VP++ ++ ++ +D D+G DD + KP E+LAR+ A+ RR Sbjct: 63 LETTKMLRANGNDVPILVLTARDAVGDRVDGLDAGADDYMVKPFSLEELLARLRALTRRS 122 Query: 120 KVSNNRAETGPIRVFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + +A + F+D DP+ + G L R E +L+ M + GK + ++ + Sbjct: 123 RPESQQA--NEVLSFADMTLDPQTREVTRGGRRISLTRTEFALLQTFMEHPGKVLDRSWL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G FD N +E +I LR+K + + + R +GY + Sbjct: 181 LNEVWG-FDFPATANSLEVYIGYLRRKTEQEGEPRLIHTVRGVGYVL 226 >gi|168334739|ref|ZP_02692871.1| DNA-binding response regulator [Epulopiscium sp. 'N.t. morphotype B'] Length = 228 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 5/177 (2%) Query: 29 FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88 F EE L+ E + + L+ G + E+ + +R S V + IS +L + Sbjct: 28 FTCYSGEEGLKVFLDEKIDVVLLDLMLPGMQGEEICKKMREISNVYIFMISAKGTLDNKV 87 Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQG 144 F+ G D+ + KPI REI+ARV A+ R + NN + G ++++ + R G Sbjct: 88 GGFNLGADEYLVKPISPREIVARVNALKTRKERENNEELCIFDKGNLKIYPETRMVISYG 147 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + L E IL +L + G+ + Q+ A+ G+ D + ++ HI +RKK+ Sbjct: 148 KDIVLTPNEFDILYHLAKSPGRVFXREQLIDAVMGI-DXDGFDRTIDVHIKNIRKKI 203 >gi|86738952|ref|YP_479352.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86565814|gb|ABD09623.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 242 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 8/142 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ R+ VP + ++ + + + G DD V KP E++ARV AI RR ++ Sbjct: 82 RLRRSGQGVPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELIARVRAILRRAGAADG 141 Query: 125 RAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 A T P+R DPE + G L E R+L YL+AN K + + Q+ ++G Sbjct: 142 -APT-PLRFADLELDPETREVRRAGRHVDLTATEYRLLHYLLANARKVLTRAQLLDHVWG 199 Query: 180 LFDEAVEENVVESHISKLRKKL 201 D + V+E+++S LR+K+ Sbjct: 200 -HDFGGDARVLETYVSYLRRKI 220 >gi|330503679|ref|YP_004380548.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] gi|328917965|gb|AEB58796.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] Length = 222 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 10/220 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +L++D + D A G +++ + +S D+ ++ L GK G +V Sbjct: 3 LLLVEDHVPLADELTASLARQGYAVDWLADGRDAAYQGASEPYDLIILDLGLPGKPGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ R P++ ++ S ++ +G DD + KP H E+ R+ A+ RR Sbjct: 63 LQEWRA--GGLATPVLVLTARGSWAERIEGLKAGADDYLTKPFHPEELALRIQALLRRAH 120 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N+ E +++ + GE L E R+L Y M + G+ ++K+ + +Y Sbjct: 121 GLANQPQLEAAGLQLDESRQCVTSGGEAIDLTAAEFRLLRYFMLHPGQILSKSHLADHLY 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E + NV+E H++ +LR KLG + ++++R GY Sbjct: 181 DGETER-DSNVIEVHVN----RLRGKLGRNVIETRRGQGY 215 >gi|329888201|ref|ZP_08266799.1| transcriptional activator protein copR [Brevundimonas diminuta ATCC 11568] gi|328846757|gb|EGF96319.1| transcriptional activator protein copR [Brevundimonas diminuta ATCC 11568] Length = 223 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 9/161 (5%) Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 I + Q P++ +S ++ + +G DD + KP E++ARV A+ RR + + Sbjct: 66 IRKGGDQTPVLFLSALGEVEDRVTGLKAGGDDYLVKPYALAELVARVEALSRRRETGGVQ 125 Query: 126 A--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182 + G + + R G+ L RE ++LE+LM + G+ V +T + ++ FD Sbjct: 126 TVLKVGDLEMNLIARTVHRDGQEIDLQPREFQLLEFLMRHAGQSVTRTMLLEKVWEYHFD 185 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221 + NV++ HIS+LR K+ GFD + + R GY ++ Sbjct: 186 P--QTNVIDVHISRLRSKIDK--GFDKAMLQTVRGAGYRLE 222 >gi|325521874|gb|EGD00591.1| two component transcriptional regulator [Burkholderia sp. TJI49] Length = 221 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 14/173 (8%) Query: 57 GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ L++ IRA + VP++ ++ +L L D G DD V KP E+LAR+ A+ Sbjct: 56 GKDGLDVLTSIRATGNTVPVVVVTARDALDDRLRGLDGGADDYVLKPFEMVELLARLRAV 115 Query: 116 YRRLKVSNNRAE----TGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAK 170 RR N A G + + R+ V G + L RE +L L+ G +++ Sbjct: 116 LRR---KNGGAAPTLGNGVVSLDPATREASVHGGPLLQLTNREFALLRALLTRPGAILSR 172 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + IYG + E VE N VE I LR+ KLG + + + R +G+ + N Sbjct: 173 NDLEDRIYG-WGEEVESNAVEYLIHSLRR----KLGGEIIRNVRGVGWMVSKN 220 >gi|310828178|ref|YP_003960535.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308739912|gb|ADO37572.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 219 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 85/188 (45%), Gaps = 9/188 (4%) Query: 38 LQSSAREDVSAIEAF------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFF 91 L A ++ +EAF ++ G L R IR + P++ ++ + + Sbjct: 31 LSDPAALSMNGLEAFDLILLDVMMPGTDGFTLCRKIRENVDCPILFLTAKTMEKDIMYGL 90 Query: 92 DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV-FPLP 150 G DD + KP + E+ ARVAA RR K + F+ G + GE L Sbjct: 91 GIGGDDYITKPFGNGELRARVAAHLRREKREKRSVLSLDGIRFNLGAHEMIIGEQKVSLT 150 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 + E I E+L + G+ +K QI+ A+YG E + + + H+ +R KL + G P+ Sbjct: 151 KSEYAICEFLARSHGQVFSKEQIYEAVYGYEGEG-DSSAIAEHVKNIRAKL-SVYGCAPI 208 Query: 211 DSKRFLGY 218 ++ +GY Sbjct: 209 ETVWGIGY 216 >gi|295106245|emb|CBL03788.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 230 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 2/157 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126 R P++ ++ ++ + DSG DD + KP E+LA + A+ RR +V + Sbjct: 68 RTGVSTPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQGEVLFEKL 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + + D + L +E + + L+AN G V+K I ++G+ + E Sbjct: 128 SAGDLELNLESHDLSCGAKSIHLSYKEFCLAKVLIANAGAVVSKDLIIEKVWGV-ESTAE 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +N VE+++S LRKK++ +++ R GY N Sbjct: 187 DNNVEAYVSFLRKKMKFLGSSARIETLRRAGYRFSVN 223 >gi|227545314|ref|ZP_03975363.1| response regulator [Lactobacillus reuteri CF48-3A] gi|300908609|ref|ZP_07126072.1| DNA-binding response regulator [Lactobacillus reuteri SD2112] gi|227184710|gb|EEI64781.1| response regulator [Lactobacillus reuteri CF48-3A] gi|300894016|gb|EFK87374.1| DNA-binding response regulator [Lactobacillus reuteri SD2112] Length = 239 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 13/159 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R HSQVP+I IS + +G DD + KP +LA++ A+ RR K + + Sbjct: 80 VRKHSQVPIIVISAAEIDTNVMHAVAAGADDYIMKPFAMTVLLAKIQALLRRNKQTTDAE 139 Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E P+ + Q L E +L+ L+++R K V+K Q+ ++ Sbjct: 140 EIMWDHNSFNPLTNILMNENGTAQ-----LTPTEGAMLQVLLSHRNKTVSKEQLLQWLWQ 194 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + EN + +IS+LR KL + ++R LGY Sbjct: 195 -GGKYLNENTLNVNISRLRTKLSTIGLRQCIHTERGLGY 232 >gi|119962132|ref|YP_946602.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119948991|gb|ABM07902.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 246 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 7/163 (4%) Query: 43 REDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101 R DV ++ L G G +VL RI +VP + ++ ++Q + +G DD V K Sbjct: 65 RPDVLVLDVMLPGFDGVEVLN--RIRTFAPEVPALFLTAKDAVQDRIVGLAAGGDDYVTK 122 Query: 102 PIHHREILARVAAIYRRLKVSN-NRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 P E+L R+ + +R V+ + AE G + + D R+ GE L + +L Sbjct: 123 PFSMEEVLLRLHRLVQRSGVAAMDTAELVVGDLTLNVDTREVTRGGEDISLTATQFELLR 182 Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 YLM N + V+K QI ++ +D + N+VE +IS LRKK+ Sbjct: 183 YLMENPKRVVSKAQILDRVWD-YDFGGQANIVELYISYLRKKI 224 >gi|91774844|ref|YP_544600.1| two component transcriptional regulator [Methylobacillus flagellatus KT] gi|91708831|gb|ABE48759.1| two component transcriptional regulator, winged helix family [Methylobacillus flagellatus KT] Length = 228 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 7/150 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130 +P+I ++ + + G DD V KP RE+ AR+ A+ RR +++++ E G Sbjct: 77 IPIIMLTARGEEADKVRGLEVGADDYVTKPFSPRELNARIKAVLRRRAPQMTDDPLEIGG 136 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--LFDEAVEEN 188 +R+ G+ L E R+L YLM+N + ++TQ+ ++G +F VE+ Sbjct: 137 LRLDPMTHRVSGNGKTLELGPTEFRLLHYLMSNPERVHSRTQVLDRVWGDRVF---VEDR 193 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ HI +LR+ L + + + R +GY Sbjct: 194 TVDVHIRRLRRALSESGHEEFIQTVRGVGY 223 >gi|56965315|ref|YP_177047.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56911559|dbj|BAD66086.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 224 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 80/155 (51%), Gaps = 11/155 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R +R + VP++ ++ S+ ++ + G DD +NKP H ++LAR+ RR K Sbjct: 61 LDVCRSVREFTDVPILFVTARTSMNDQINGLNIGGDDYINKPFTHEQLLARIKTHLRREK 120 Query: 121 VSNNRAET---GPIRVFSDGRDPEVQ-GEV-FPLPRRERRILEYLMANRGKRVAKTQIFS 175 + G I++ D R E++ GE L +E +I+E LM+N + +K ++ Sbjct: 121 RKQQPTDELVYGKIKL--DRRTNELRYGETPLLLTNKEFKIMEMLMSNPRQIFSKDHLYE 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 I+G+ + + + V HI +R ++ DP+ Sbjct: 179 TIWGV-EATGQSHTVTEHIRNIRIRIHK---IDPM 209 >gi|54022964|ref|YP_117206.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54014472|dbj|BAD55842.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 225 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 27/202 (13%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 RAL ++GY V++E F L+ + D+ ++ L G LE+ R + Sbjct: 19 RALGREGYT-------VTVESFGPAVLRRALEGN--HDLLILDLGL--PGMDGLEVCRQV 67 Query: 68 RAHSQVPLIGISDYPSLQTT-----LDF---FDSGVDDVVNKPIHHREILARVAAIYRRL 119 RA +D L T +DF D+G DD V KP E+LARV A+ RR Sbjct: 68 RARG-------ADLAVLMLTARTDEVDFVVGLDAGADDYVGKPFRLAELLARVRALLRRS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + E G IR+ R V G L +E +L+ L+ G+ V + I ++G Sbjct: 121 GIGDEAVEVGGIRLEPAARRVLVNGVEVGLANKEYELLKVLIDRAGQVVPRETILREVWG 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 E ++ H+S LR+K+ Sbjct: 181 -DAELRGSKTLDMHMSWLRRKI 201 >gi|315650626|ref|ZP_07903686.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315487123|gb|EFU77445.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 225 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 14/162 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +S VP+I IS + + + G DD + KPI ++ AI RR Sbjct: 66 IRQNSNVPIIFISSHNNQVDMVSAMQFGADDYITKPIDINLTRVKIQAILRR-----TYE 120 Query: 127 ETGPIR--VFS----DGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIY 178 T P+ VF D ++ GE F L + E ILEYL RGK + I + + Sbjct: 121 YTMPVDKPVFEGISLDISKAKLLGEGFCIDLTKTELLILEYLFNMRGKIAKREDIMNHCW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D+ +++N + +I++LRKKLR + + +K+ +GY + Sbjct: 181 Q-GDDFIDDNTLAVNITRLRKKLRGVGYKEFIQTKKGMGYYL 221 >gi|229194250|ref|ZP_04321094.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876] gi|228589225|gb|EEK47200.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876] Length = 242 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 11/150 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 69 IEVCRKLREKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFL 128 Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V R E I + +G+ PL +E +L + N + K+Q Sbjct: 129 VLGSEAGDREQTRIEFKEISIDMKKYTVFKEGKEIPLTAKEMELLRFFALNPEQVFTKSQ 188 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 +F ++G D +E +N V HI KLRKK+ Sbjct: 189 LFRNVWG--DNYLEDDNTVMVHIRKLRKKI 216 >gi|227540357|ref|ZP_03970406.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227239681|gb|EEI89696.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 223 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 4/139 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-R 125 +R Q I IS S+ + D G DD + KP H E+ AR+ A+ RR +++ N Sbjct: 66 LRGKEQQHTIIISARDSIDDKIRGLDLGADDYLTKPFHLSELNARIKAVLRRKQLAGNPV 125 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + +++ D R V + R+E + + + N+ K V KT + ++G D + Sbjct: 126 VQLNNLQINYDTRSICVDDQDLHFSRKEFDVFSFFVLNKNKLVTKTALAEHVWG-DDSDM 184 Query: 186 EENV--VESHISKLRKKLR 202 +N+ + S I +RKKL+ Sbjct: 185 ADNLDFIYSQIKNIRKKLK 203 >gi|227532872|ref|ZP_03962921.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189477|gb|EEI69544.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 241 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR SQVP+I ++ + + G DD + KP E++ARV R +N Sbjct: 76 RKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALR-----HN 130 Query: 125 RAETGPIRVFS------DGRDPEVQ-GEV-FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R P +F D + VQ GEV PL +RE +L L+A++ + ++ + A Sbjct: 131 RQAVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDA 190 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223 ++ FD + N+++ +I LR K+ + G + + R +GY + N Sbjct: 191 VWETDFDG--QPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 237 >gi|167769138|ref|ZP_02441191.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM 17241] gi|167668778|gb|EDS12908.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM 17241] Length = 230 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 90/216 (41%), Gaps = 29/216 (13%) Query: 1 MFVLIDDRALV--------KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52 + V DDR + KDGY +DG EE L E I Sbjct: 6 ILVCDDDRNICELLRLYLEKDGYTVSIANDG-----------EEALAKFTAEAPDLILLD 54 Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 ++ ++ R IR S P+I I+ + + G DD V KP +EI+ARV Sbjct: 55 IMMPKLDGWQVCREIRKKSDCPIIMITAKGETFDKVLGLELGSDDYVVKPFDPKEIVARV 114 Query: 113 AAIYRRLKVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRG 165 AI RR S + AE V D + +V G V P +E +L +L +N Sbjct: 115 KAIMRR--ASKSSAENDVKEVAYDKLVVNMTKYELKVDGRVVDTPPKELELLYHLASNPN 172 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + + Q+ ++G F+ + V+ HI +LR+KL Sbjct: 173 RVYTRDQLLDEVWG-FEYYGDSRTVDVHIKRLREKL 207 >gi|154503469|ref|ZP_02040529.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149] gi|153795569|gb|EDN77989.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149] Length = 233 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 89/191 (46%), Gaps = 18/191 (9%) Query: 34 FEEWLQSSAREDVSAIEAF--------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85 F+ + S+ + +SA E + L+ G ++ R +RA SQVP+I +S + Sbjct: 29 FDTKIVSNGEDALSAFETYQPNLVLLDLMLPGIDGYQVCRELRAKSQVPIIMLSAKGEVF 88 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---------ETGPIRVFSD 136 + + G DD + KP +E++ARV A+ RR + A E + + Sbjct: 89 DKVLGLELGADDYIMKPFDSKEMVARVRAVLRRYQPVKPEAPAAEKVKCVEYDGLTINLT 148 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 G+ +P +E +L +L A+ + + Q+ I+G ++ + V+ HI + Sbjct: 149 NYSVLCDGQNVDMPPKELELLYFLAASPNQVFTREQLLDQIWG-YEYIGDTRTVDVHIKR 207 Query: 197 LRKKLRNKLGF 207 LR+K+++ G+ Sbjct: 208 LREKIKDHPGW 218 >gi|11467431|ref|NP_043139.1| hypothetical protein CypaCp002 [Cyanophora paradoxa] gi|1351749|sp|P48259|YCF27_CYAPA RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|1016232|gb|AAA81319.1| ycf27 [Cyanophora paradoxa] Length = 239 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 10/162 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKV 121 +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR L Sbjct: 71 LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRRTENPTLST 130 Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ E G +++ + R GE L E +LE L++ G+ ++ QI ++ Sbjct: 131 TSTNGENLQIGFLKIDINKRQVFKNGERIRLTGMEFSLLELLISKMGEPFSRAQILQEVW 190 Query: 179 GLFDE-AVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218 G E ++ VV+ HIS+LR KL N D + + R +GY Sbjct: 191 GYTPERHIDTRVVDVHISRLRSKLEENPSNPDLILTARGIGY 232 >gi|238792041|ref|ZP_04635677.1| Two-component system response regulator [Yersinia intermedia ATCC 29909] gi|238728672|gb|EEQ20190.1| Two-component system response regulator [Yersinia intermedia ATCC 29909] Length = 227 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 18/208 (8%) Query: 27 EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGFN+ L + + ++ D +A+ ++ +++ R +R S++P+I ++ Sbjct: 23 EGFNAELVLTGKAGIAAALSGDYTALILDIMLPDMSGIDVLRQVRKKSRLPIIMLTAKGD 82 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------KVSNNRAETGPIRVFSD 136 + + G DD + KP + RE++AR+ A+ RR ++ G + + Sbjct: 83 NIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDEHPDVSSADDSIISHGDLTLNPS 142 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 R E QG+ F L E +LE L+ + + V K ++ G EA + + V+ HIS Sbjct: 143 TRSSEWQGKAFDLTASEFNLLELLLRSPDRVVTKDELSDKGLGRPREAYDRS-VDVHISN 201 Query: 197 LRKKLR----NKLGFDPVDSKRFLGYSI 220 +R+KL NKL + V R +GY I Sbjct: 202 IRQKLAALAGNKLNIETV---RSIGYRI 226 >gi|317405506|gb|EFV85814.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 237 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 13/154 (8%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 VP++ ++ SL+ L F G DD + KP E+ AR+ A+ +R K S +R Sbjct: 84 VPVLVLTARDSLEDKLAGFSHGADDYLTKPFALLEVEARLLALIQRAKGST----VDTVR 139 Query: 133 VFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 VF D R + G+ L R+ ILE L+ + G+ V++ ++ S ++G E Sbjct: 140 VFGDLAYDTRSRTASIGGKPVHLTRKATLILEALLRDPGRVVSREELESQLWG--SEPPS 197 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + S + LR+ L + GFD +++ G+ + Sbjct: 198 SDALRSQVHLLRRALADA-GFDGIETLHGTGWRL 230 >gi|291005208|ref|ZP_06563181.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 221 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 20/139 (14%) Query: 77 GISDYPSLQTT--------LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRA 126 GISD P++ T + +G DD V KP + AR+ A+ RR + S Sbjct: 65 GISDVPTIVATARDDEREIVRLLRAGADDYVVKPFSSEHLNARIEAVLRRARGSRPPQAV 124 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI----YGLFD 182 E G +R+ D R + G L RRE +L YL A G+ V + ++ + + YG Sbjct: 125 EVGGLRIDLDSRAATLDGAELELTRREFDLLAYLAARPGRVVPRRELLAQVWRQSYG--- 181 Query: 183 EAVEENVVESHISKLRKKL 201 ++ ++ H+S LR+KL Sbjct: 182 ---DDQTIDVHLSWLRRKL 197 >gi|217968617|ref|YP_002353851.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217505944|gb|ACK52955.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 3/148 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 + P++ ++ S + + + G DD + KP E+ AR+ A+ RR G Sbjct: 77 APTPVLVLTARGSTEERVHGLNLGADDYLPKPFELAELEARIKALLRRAGNQVPLVRLGR 136 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + R V G+ L RE +LE L+A G+ VA+ +F ++ FD + Sbjct: 137 LEFDTTTRMAAVDGQALALTPRELAVLEALLARVGRPVAREALFEKVFE-FDADARVEAI 195 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E ++S+LRKKL +++ R LGY Sbjct: 196 EIYVSRLRKKLEG--AGVAINTLRGLGY 221 >gi|225853570|ref|YP_002733803.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella melitensis ATCC 23457] gi|254718183|ref|ZP_05179994.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. 83/13] gi|256262946|ref|ZP_05465478.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|265983140|ref|ZP_06095875.1| two component transcriptional regulator [Brucella sp. 83/13] gi|306837697|ref|ZP_07470566.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. NF 2653] gi|225641935|gb|ACO01849.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella melitensis ATCC 23457] gi|263092820|gb|EEZ16995.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|264661732|gb|EEZ31993.1| two component transcriptional regulator [Brucella sp. 83/13] gi|306407255|gb|EFM63465.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. NF 2653] gi|326410142|gb|ADZ67207.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella melitensis M28] gi|326539862|gb|ADZ88077.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella melitensis M5-90] Length = 228 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 20/171 (11%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + G DD V KP E+LARV A+ R Sbjct: 64 IELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 123 Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R LKV + + RV+ ++ EV L E R+LEY M + G+ Sbjct: 124 RANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSPGRVF 176 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +++Q+ ++G D V++ V+ H+ +LRK + DP+ + R GYS Sbjct: 177 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKAINVGRAADPIRTVRGAGYS 226 >gi|224372302|ref|YP_002606674.1| response regulator receiver domain protein [Nautilia profundicola AmH] gi|223588456|gb|ACM92192.1| response regulator receiver domain protein [Nautilia profundicola AmH] Length = 221 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 10/130 (7%) Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLP 150 DD + KP E++ARV A+YRR +N IRV +PE + G++ L Sbjct: 94 DDYLTKPFEFEELIARVKALYRR----SNNLNDNIIRVADLELNPETKEVRRAGKLIELT 149 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 ++ +L+YLM N+ K V I S ++ + DE + NV+ +IS LRKK+ + Sbjct: 150 AKQFELLKYLMINKNKIVNTDMIQSNLWEMDDE-INSNVINVYISHLRKKIDKDFDKKLI 208 Query: 211 DSKRFLGYSI 220 + R +G+ + Sbjct: 209 KTYRGMGFKL 218 >gi|153953971|ref|YP_001394736.1| PhoB [Clostridium kluyveri DSM 555] gi|146346852|gb|EDK33388.1| PhoB [Clostridium kluyveri DSM 555] Length = 231 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 6/134 (4%) Query: 94 GVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPR 151 G DD + KP RE+LARV AI RR +K + G I + D + GE L Sbjct: 99 GADDYITKPFSVRELLARVKAILRRTAIKTLDKYYVFGDISIDFDRHEVLKNGEKVELTL 158 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-- 209 +E +L+ L+ N+G+ + + + I+G ++ E V+ HI +R+K+ + P Sbjct: 159 KEFELLQMLIKNKGRVMTRDFLLDKIWG-YEYVGETRTVDVHIRHIRQKIES-CDKKPKY 216 Query: 210 VDSKRFLGYSIDWN 223 +++ R +GY +W Sbjct: 217 IETIRGIGYRFNWK 230 >gi|126651030|ref|ZP_01723241.1| two-component response regulator [Bacillus sp. B14905] gi|126592231|gb|EAZ86280.1| two-component response regulator [Bacillus sp. B14905] Length = 230 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 9/142 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LK 120 IRA +P+I +S + G DD V KP H E+LARV + RR Sbjct: 69 IRAERNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRRYVQLGTYS 128 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E + + D ++ ++GE L E +I E LM N G+ + +I+ ++ Sbjct: 129 EGATKVEIDGLTLDEDAKEIILEGEPVRLTPIEYKITELLMKNAGRVFSIREIYERVWN- 187 Query: 181 FDEAVE-ENVVESHISKLRKKL 201 +EA EN+V HI K+R+K+ Sbjct: 188 -EEAYNAENIVAVHIRKIREKI 208 >gi|167647856|ref|YP_001685519.1| two component transcriptional regulator [Caulobacter sp. K31] gi|167350286|gb|ABZ73021.1| two component transcriptional regulator, winged helix family [Caulobacter sp. K31] Length = 226 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 105/222 (47%), Gaps = 10/222 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++ DD L + +AL GD G +++ E ++L + D ++ L K + V Sbjct: 3 ILLVEDDPDLSRQLKLAL-GDAGYAVDHAPDGEEAQFLGENEPYDAVVLDLGLP-KVDGV 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119 L R R + P++ ++ S + FD+G DD + KP H E + A + R Sbjct: 61 SVLERWRRGNIATPVLILTARGSWNEKVAGFDAGADDYLTKPFHTEELLARLRALLRRSA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ G +R+ V GE L E R+L Y+M ++G+ + +T++ +Y Sbjct: 121 GHASPSLSCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYMMMHQGRVIGRTELVEHLYD 180 Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + N +E I +LRK KLG + +++ R LGY + Sbjct: 181 QDFDR--DSNTIEVFIGRLRK----KLGAERIETVRGLGYRL 216 >gi|325066734|ref|ZP_08125407.1| two component transcriptional regulator, winged helix family protein [Actinomyces oris K20] gi|326773080|ref|ZP_08232364.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505] gi|326637712|gb|EGE38614.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505] Length = 249 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 15/160 (9%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ ++ + + G DD V KP E++AR+ AI RR N+ + G +R Sbjct: 87 TPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHAIENQ-DDGVVR 145 Query: 133 VFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 V D + EV+ L E ++L YLM N G+ V+K QI ++ +D + Sbjct: 146 VADLVLDEDAH-EVYRAEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDHVWE-YDWNGD 203 Query: 187 ENVVESHISKLRKKLRNKLGFD--PV----DSKRFLGYSI 220 +VES+IS LR+K+ G D PV ++R +GY + Sbjct: 204 AAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYML 243 >gi|325955230|ref|YP_004238890.1| two component transcriptional regulator, winged helix family [Weeksella virosa DSM 16922] gi|323437848|gb|ADX68312.1| two component transcriptional regulator, winged helix family [Weeksella virosa DSM 16922] Length = 219 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 11/157 (7%) Query: 61 LELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 LE+ + IR + P+I I+ ++Q T++ +G +D + KP E++AR+ +Y Sbjct: 63 LEVCKTIRNTENINQNTPIIFITAKDTVQDTIEGLHAGANDYLKKPFDFNELVARI-RVY 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R NR + G I + E+ L +E +L+YL ++ + + +I Sbjct: 122 LRASSYQNRLQFGSIALDQQTHHVYSNQELIDLTHKEYELLQYLFIHKNRACTRKEILEN 181 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNK---LGFDP 209 ++ + FD + +V + ++ +RKKL K LG +P Sbjct: 182 VWDIHFD--YDSSVTDVFVNAIRKKLNLKKMILGCEP 216 >gi|301048805|ref|ZP_07195803.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|300299390|gb|EFJ55775.1| response regulator receiver domain protein [Escherichia coli MS 185-1] Length = 240 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167 I RR K + AE+ P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|297528706|ref|YP_003669981.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297251958|gb|ADI25404.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 232 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 10/169 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +EL R+IR VP++ +S + + G DD + KP +E+ AR+ RR + Sbjct: 62 MELCRLIRERVDVPIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDCHLRREE 121 Query: 121 --VSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 SN R + D EV +G+ P ++E I++ LM N+ +K +IF Sbjct: 122 RIRSNERYLLSSKNMTIDLLANEVFCKGKKLPFTKKEYEIVKLLMLNQKIVFSKERIFER 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDWN 223 ++G+ E+ + V ES I +RKK++ DP S + G W+ Sbjct: 182 VWGIDSESQLDTVAES-IKNIRKKIK---AVDPDTSYIQTLYGLGYKWD 226 >gi|126659727|ref|ZP_01730855.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|126618975|gb|EAZ89716.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] Length = 224 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 5/159 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI ++ +P++ ++ + + + D G DD V KP E+LAR+ A+ RR V+ N Sbjct: 65 RIRQSGCSIPVLMLTAKDTSEDKVTGLDVGADDYVVKPFDVPELLARIRALLRRGNVAPN 124 Query: 125 RA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E +R+ + ++ L +E +LE + N ++++ I ++ F++ Sbjct: 125 PILEWQQLRLDPSSYEVTYSDQILHLTPKEYGLLELFLRNENLVLSRSAILDNLWS-FED 183 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 E V+ HI LRKKLR K+G P +++ +GY + Sbjct: 184 PPSEEAVKVHIKDLRKKLR-KVGAPPDFIETVYGVGYRL 221 >gi|120612912|ref|YP_972590.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120591376|gb|ABM34816.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] Length = 236 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 4/144 (2%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA S VP++ I+ + Q ++ SG DD + KP+ E +AR +A+ RR Sbjct: 60 LEVIRTVRAASMSVPILFITRRNAEQDLVEALASGADDFMTKPLRMGEFIARCSALLRRA 119 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V + G R D R V L +E + ++ N G+ +++ + AI Sbjct: 120 YPQVVSGTLMFGRYRFDPDKRSLLVDDVPVELKNKEYELALFMFQNAGRLLSREHLREAI 179 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G +A + +++HIS+LR KL Sbjct: 180 WGGIHDAPSRS-LDTHISRLRAKL 202 >gi|22536883|ref|NP_687734.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|25010796|ref|NP_735191.1| DNA-binding response regulator [Streptococcus agalactiae NEM316] gi|76786877|ref|YP_329467.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|76798183|ref|ZP_00780434.1| VicR protein [Streptococcus agalactiae 18RS21] gi|77406409|ref|ZP_00783468.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77408360|ref|ZP_00785101.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77410786|ref|ZP_00787144.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77413081|ref|ZP_00789282.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|22533733|gb|AAM99606.1|AE014224_9 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|23095150|emb|CAD46385.1| Unknown [Streptococcus agalactiae NEM316] gi|76561934|gb|ABA44518.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|76586446|gb|EAO62953.1| VicR protein [Streptococcus agalactiae 18RS21] gi|77160874|gb|EAO71984.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|77163165|gb|EAO74118.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77173041|gb|EAO76169.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77174973|gb|EAO77783.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|319744748|gb|EFV97090.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 236 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 14/171 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + +R S +P+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 61 LEVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120 Query: 121 -----VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 V+ A+ G +++ D + +GE L RE +L +L + G+ + Sbjct: 121 NIETAVAEESAQNASSDITIGELQILPDAFIAKKRGEEIELTHREFELLHHLATHIGQVM 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 + + ++G +D + V+ + +LR+K+ + G + + ++R +GY Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGY 230 >gi|323439204|gb|EGA96931.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus O11] gi|323442418|gb|EGB00047.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus O46] Length = 231 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 17/200 (8%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRA 69 D I D ++L+ +N E Q+ + + + L+ G + L L IR Sbjct: 11 DHAITHLLDVALTLDYYNVTTAENATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 H+ +P+I IS QT + D+G +D + KP + E+ AR+ I R ++ + ET Sbjct: 71 HTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIER---IAKSHQETN 127 Query: 130 PIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 VF++G + + + L E +LE L ++GK + I IYG Sbjct: 128 I--VFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLANHKGKVLTYEMILKRIYGYV 185 Query: 182 DEAVEENVVESHISKLRKKL 201 ++ E + H++ LR+KL Sbjct: 186 NKT-EMPSLRVHMTSLRQKL 204 >gi|315605707|ref|ZP_07880740.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315312662|gb|EFU60746.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 234 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 17/188 (9%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHS-QVPLIG 77 +L E W ++A + + A+ + V+ ++PR+ +RAH +P++ Sbjct: 26 QALRHEGWETATASDGLDALAKAASFHPDVVILDVQMPRMDGLETLERLRAHDPHMPVLF 85 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRV 133 ++ ++ + +G DD V KP E+ ARV A+ RR + T + + Sbjct: 86 LTARDAVADRVSGLRAGADDYVTKPFDLDEVAARVQALLRRSGRAQQTRSTVLTVADLTL 145 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 + D GE L E +L +LM N G ++K +I A++ +D + NVVE + Sbjct: 146 NVESHDVSRGGENITLTNTEFELLRFLMENVGIVLSKQRILDAVWS-YDFGGQVNVVELY 204 Query: 194 ISKLRKKL 201 IS LRKK+ Sbjct: 205 ISYLRKKI 212 >gi|307277355|ref|ZP_07558453.1| putative regulatory protein VanR [Enterococcus faecalis TX2134] gi|306505989|gb|EFM75161.1| putative regulatory protein VanR [Enterococcus faecalis TX2134] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 20/174 (11%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R SQ+P+I ++ + + +G DD V KP + E++ARV +I RR + Sbjct: 61 MEVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSQ 120 Query: 121 VSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRI------LEYLMANRGKRV- 168 + + E GP+ + D EV + R+E ++ + YL+A+ RV Sbjct: 121 MQLTKEEPDELEVGPLMINKDSH------EVKTIERKEIQLTALEFGILYLLASHPNRVF 174 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221 + +IF ++ + V V H+S LR K+ G + V + +GY ID Sbjct: 175 SADEIFERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227 >gi|302188560|ref|ZP_07265233.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae 642] Length = 227 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 3/167 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +++ + +R+ S VP++ I+ L D G DD + KP RE++ARV AI Sbjct: 63 GRNGMDICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR S G + V G L E R+L + G+ ++ + Sbjct: 123 RRSSSSEPHTPKG-LLVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +Y V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 182 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 227 >gi|298290746|ref|YP_003692685.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296927257|gb|ADH88066.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 263 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 28/213 (13%) Query: 16 IALFGDDGVSLE---GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 +A G++G+ L G++ L + L R D A+ A L G+G+K Sbjct: 66 VASDGEEGLMLAREGGYDVLLVDRML---PRRDGLALIAELRGRGDKT------------ 110 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGP 130 P + +S + + +G DD + KP E+LARV A+ RR + ++ Sbjct: 111 -PALILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEALARRGGPQAADTVYRVAD 169 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189 + + G+ L RE R+LEYLM + G+ V +T + ++ FD + NV Sbjct: 170 LELDRLAHRCTRAGQEIVLQPREFRLLEYLMRHAGQVVTRTMLLENVWDYHFDP--QTNV 227 Query: 190 VESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 ++ H+S+LR K+ GFDP + + R GY I Sbjct: 228 IDVHVSRLRSKIDK--GFDPPLLHTVRGAGYII 258 >gi|255524527|ref|ZP_05391482.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186025|ref|ZP_06854430.1| subtilin biosynthesis regulatory protein SpaR [Clostridium carboxidivorans P7] gi|255511823|gb|EET88108.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049293|gb|EFG88722.1| subtilin biosynthesis regulatory protein SpaR [Clostridium carboxidivorans P7] Length = 220 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 12/164 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L IR P+I ++ + G DD ++KP E+ ARV A RR Sbjct: 60 FKLCEKIRNSVDSPIIFLTAKTEESAIVKGLALGGDDYISKPFGVMELNARVEAYLRR-- 117 Query: 121 VSNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 NR ++ I + D ++ + G + E I EYL NRGK K IF Sbjct: 118 --QNRGKSTRKLIYENITIDFDKKEISIGGNAVNFTKNEYNICEYLALNRGKVFTKQAIF 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +IY L D + +V+ +I +R K + K P+++ +GY Sbjct: 176 ESIYDL-DSDTQFSVITEYIRLIRNKFK-KFDCSPIETVWGVGY 217 >gi|228936126|ref|ZP_04098931.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823536|gb|EEM69363.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 8/152 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 64 VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123 Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I V R V L E IL Y M N+G + + Q+ S Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMRNQGIVLTREQLIS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 I+G ++ A ++ V SHI LR KL K + Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|328956718|ref|YP_004374104.1| two-component response regulator [Carnobacterium sp. 17-4] gi|328673042|gb|AEB29088.1| two-component response regulator [Carnobacterium sp. 17-4] Length = 241 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 17/124 (13%) Query: 94 GVDDVVNKPIHHREILARVAAIYRR----------LKVSNNRAE------TGPIRVFSDG 137 G DD + KP RE+LAR+ AI RR LK SN+ AE G I++ Sbjct: 95 GADDYMTKPFSPREVLARMKAIMRRMSSKSKAEEALKESNSTAEQDELIKVGDIQIDPSQ 154 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 + V+G+ + +E +L Y++ + +++ Q+ AI+ FD A E +V+ HIS L Sbjct: 155 YEVIVRGKKIDVTPKEFELLMYMIKRINRILSREQLLDAIWN-FDYAGETRIVDVHISHL 213 Query: 198 RKKL 201 R+K+ Sbjct: 214 REKI 217 >gi|308068191|ref|YP_003869796.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305857470|gb|ADM69258.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 99/216 (45%), Gaps = 17/216 (7%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L +GY L +G EG N + +A DV ++ + E+ R + Sbjct: 20 RGLAFEGYEVLTAANGA--EGLNKM-------LTAEPDVVVLDVMM--PQVDGFEVCRRM 68 Query: 68 R-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----S 122 R S VP++ ++ ++ + D G DD + KP E+LARV A+ RR + Sbjct: 69 REGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRRKTEQQDNN 128 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 NR +++ ++ R+ G+ L +E +L M N + +++ I I+G +D Sbjct: 129 GNRLTFEDLQLDNESREVVRGGKRLELTAKEFELLHLFMQNPKRVLSRDLIMDKIWG-YD 187 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + E NV+E +I+ LR+K G + + R GY Sbjct: 188 YSGESNVLEVYIAMLRQKTEQDGGKRLIRTIRGAGY 223 >gi|139438314|ref|ZP_01771867.1| Hypothetical protein COLAER_00856 [Collinsella aerofaciens ATCC 25986] gi|133776511|gb|EBA40331.1| Hypothetical protein COLAER_00856 [Collinsella aerofaciens ATCC 25986] Length = 250 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 11/226 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D ++D + G+ EGF+ E+ + AR A+ ++ Sbjct: 9 MIYYVEDDDNIRDLTVYALRKQGIEAEGFSC--DGEFKAAVARRVPDAVLLDIMLPDTDG 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLD---FFDSGVDDVVNKPIHHREILARVAAIYR 117 L + R +RA + I + T LD D G DD + KP E+ +R A+ R Sbjct: 67 LAIMRRLRADRLTATVPIMMLTAKDTELDKVMALDGGADDYLTKPFSLMELASRCRALLR 126 Query: 118 R---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R +K +++ G I + R+ V GE L RE +LEYLM G + + Sbjct: 127 RGGMVKQASDVLSVGDIVLSPSHREVTVAGESLKLTLREFDLLEYLMRKPGVVFTRESLL 186 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++G +D V+ H+ LR+KL +++ R +GY + Sbjct: 187 QSVWG-WDFDGGSRTVDVHVQTLRQKLGEHAS--AIETVRGVGYRL 229 >gi|330810224|ref|YP_004354686.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378332|gb|AEA69682.1| putative Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 227 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 14/156 (8%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ IS + + +G DD + KP E+ ARV + RR +N E + Sbjct: 74 TPILMISALSDVDERVRGLRAGGDDYLTKPFATDEMAARVEVLLRR---NNGAREPETVL 130 Query: 133 VFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 +D R+ G++ L E ++LE+LM N G+ +++ IF ++G FD Sbjct: 131 RVADLELNLISREASRNGQLLSLLPTEYKLLEFLMRNSGQILSRMMIFEEVWGYHFDPGT 190 Query: 186 EENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 N+++ HI +LRKK+ + G +P + + R GY I Sbjct: 191 --NLIDVHIGRLRKKI-DPPGLEPLIRTVRGSGYVI 223 >gi|320160915|ref|YP_004174139.1| putative OmpR family two-component system response regulator [Anaerolinea thermophila UNI-1] gi|319994768|dbj|BAJ63539.1| putative OmpR family two-component system response regulator [Anaerolinea thermophila UNI-1] Length = 244 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 11/162 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ ++IR S P+I ++ + + G DD + KP RE+++RV A+ RR++ Sbjct: 67 FEVLKLIRESSNTPVIMLTAKGEEDDRVRGLELGADDYITKPFSPRELVSRVKAVLRRVE 126 Query: 121 VSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ A+ I+V R+ V+G + L E R+L +L+ N G + Q+ Sbjct: 127 ATSLTAKNEIIQVDDRLKIDFGRREVWVEGNLVKLRPTEYRLLYHLVQNAGWVMTYEQLL 186 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + ++G ++ EE+ V +++ LR+K+ DP + K L Sbjct: 187 TKVWG-YEYRDEEHYVRLYVNYLRQKIEE----DPSNPKYIL 223 >gi|13324638|gb|AAK18821.1|AF327738_3 response regulator Rr1 [Streptococcus thermophilus] Length = 226 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 75/157 (47%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP +LA++ + RR Sbjct: 67 IRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQ 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N E + + D QGEV L + E +IL+ L + G V++ + ++ D Sbjct: 127 NLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQILQVLFEHAGNIVSREDLMKELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + +++ LRKKL D +++K+ +GY + Sbjct: 186 FIDDNTLSVNVAHLRKKLEAVGLKDFIETKKGVGYGL 222 >gi|330885633|gb|EGH19782.1| sensor histidine kinase BaeS [Pseudomonas syringae pv. glycinea str. race 4] Length = 690 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 3/166 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +++ R +R+ S VP++ I+ L D G DD + KP RE++ARV AI Sbjct: 526 GRDGMDICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 585 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR S + ++V G L E R+L + G+ ++ + Sbjct: 586 RRTS-STDPHTPKVLQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDR 644 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 +Y V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 645 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 689 >gi|323490769|ref|ZP_08095971.1| two-component response regulator [Planococcus donghaensis MPA1U2] gi|323395651|gb|EGA88495.1| two-component response regulator [Planococcus donghaensis MPA1U2] Length = 218 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 4/150 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S +P+I ++ + + G DD + KP E+LAR+ A+ RR Sbjct: 58 EVCRDIRKFSDIPIIMLTAREQQEDVVKGLRLGADDYMTKPFGEEELLARMEAVLRR-SA 116 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R E + +G + + + L +E +L LM N K + ++ ++G + Sbjct: 117 PARRIEFRGLLWDEEGFELSYEQKSIRLTPKEFSMLGLLMKNPNKVFERDRLLELVWG-Y 175 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD 211 D E V+SH+ +R+K+R GF PVD Sbjct: 176 DSETEGRTVDSHVRNIREKVRQA-GF-PVD 203 >gi|312889820|ref|ZP_07749366.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311297746|gb|EFQ74869.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 227 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 83/166 (50%), Gaps = 12/166 (7%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +EL R IR A ++P+I ++ + ++ FD+G DD + KP RE+L R+ A+ R Sbjct: 60 IELCREIRMAKPELPVILLTALGTTDDKVEGFDAGADDYLVKPFDFRELLVRIRAVMNR- 118 Query: 120 KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + A P+ ++D + G+V L +E ++LEY++ + + + + +I Sbjct: 119 -KNGTGASISPVTKYADLEINNQTKSVTRSGKVIALTPKELKLLEYMVQHADRVLTRAEI 177 Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ FD N ++ +I+ LRKK+ + ++ LG+ Sbjct: 178 AEKVWNTHFDTGT--NFIDVYINYLRKKIDKDFSDKLIHTRPGLGF 221 >gi|311070908|ref|YP_003975831.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310871425|gb|ADP34900.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 258 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 8/150 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++L +IIR S++P++ IS G DD + KP E+ ARV A RR Sbjct: 89 MDLLKIIREQSKIPVLIISAKDGDVEKALGLGFGADDYIAKPFSMIELSARVKAAIRRAT 148 Query: 121 --VSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N AET IRV D E + EV L +E +I++ L N K + QI Sbjct: 149 QYAVNEPAETNIIRVHELTLDIENVLITKKDEVIQLTSKEWQIIKLLFTNPKKVFTREQI 208 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + +++ D +EN++ H+ +LR+K+ + Sbjct: 209 YRSVWN-EDYYGDENIINVHMRRLREKIED 237 >gi|300692441|ref|YP_003753436.1| response regulator transcription regulator protein [Ralstonia solanacearum PSI07] gi|299079501|emb|CBJ52179.1| putative response regulator transcription regulator protein [Ralstonia solanacearum PSI07] Length = 246 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 15/171 (8%) Query: 61 LELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++L ++R+ Q +P++ ++ + + G DD + KP H E+ ARV A+ RR Sbjct: 60 IDLLSVVRSRHQEVLPILFVTAEERERGLVRALGQGADDYIAKPFHIPELRARVEALLRR 119 Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + GP R R + GE L E ++ L AN G+ +++ IF Sbjct: 120 AYPVPYAGMPFAVGPYRFNPQRRQVTLHGEHLALTGIEFQLAMLLFANAGRTLSRDHIFG 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL-----GYSID 221 ++G + A ++SH+S++R KL+ DP + R + GY +D Sbjct: 180 QVWGR-NSAEYTRTIDSHVSRIRLKLQ----VDPANEVRLVAVYKHGYRLD 225 >gi|289674391|ref|ZP_06495281.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae FF5] Length = 220 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 13/166 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+L R +RA + +P++ ++ + D+G DD + KP E+ ARV A+ RR Sbjct: 60 LDLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR- 118 Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S RA E I + + +G P+ E ++L LM GK V + ++ + Sbjct: 119 --SQGRAQPLLEHAGISLDPTSQQVSFKGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +YG + + VE N +E I LRKKL +L + + R +GY ++ Sbjct: 177 TLYG-WQDKVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217 >gi|255524800|ref|ZP_05391750.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188663|ref|ZP_06857051.1| subtilin biosynthesis regulatory protein SpaR [Clostridium carboxidivorans P7] gi|255511467|gb|EET87757.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296046927|gb|EFG86373.1| subtilin biosynthesis regulatory protein SpaR [Clostridium carboxidivorans P7] Length = 219 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 95/221 (42%), Gaps = 20/221 (9%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + VL+ + L KDG++ DD L +++ L D+ Sbjct: 13 ILVLVKN-VLAKDGHVITIVDDAKKLSVNEYTKYDLILLDVMMPDIDG------------ 59 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 EL + IR P++ ++ + G DD + KP E+ ARV A RR Sbjct: 60 FELCKKIRELVDSPILFLTARTMESDIMFGLGIGGDDYITKPFGTGELRARVNAHLRREN 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +N ++ ++ +Q P+ + E I E+L+ NRG+ K QI+ A+YG Sbjct: 120 REKHNMISVSGMKFNLASKEIIIQDRKVPMTKSEYAICEFLVRNRGQVFTKEQIYEAVYG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGY 218 E+ + E HI +R KL L F+ P+++ +GY Sbjct: 180 YERESDSSGIAE-HIKNIRAKL---LVFELSPIETVWGIGY 216 >gi|229153018|ref|ZP_04281199.1| Two-component response regulator [Bacillus cereus m1550] gi|228630438|gb|EEK87086.1| Two-component response regulator [Bacillus cereus m1550] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 8/152 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 64 VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123 Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I V R V L E IL Y M N+G + + Q+ S Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVNRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 I+G ++ A ++ V SHI LR KL K + Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|255282430|ref|ZP_05346985.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM 14469] gi|255267014|gb|EET60219.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM 14469] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/205 (23%), Positives = 98/205 (47%), Gaps = 9/205 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ + + EE LQ + ++ + L+ L Sbjct: 6 LVVDDEKLIVKGIRFSLEQDGMEVDC--AYDGEEALQMAKNKEYDMVLLDLMLPKVDGLS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 + + IR S VP++ ++ + + G DD + KP + E+ AR+ AI RR Sbjct: 64 VCQQIREFSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAIMRRTGKP 123 Query: 120 KVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +R+ E G + + + R + G+ L +E +LE L+ N GK ++ + Sbjct: 124 AAAESRSRVVEAGDLVLDCESRRVTIAGKEINLTAKEFDVLELLVFNPGKVYSRENLLDT 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++G ++ + V+ HI +LR+K+ Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKI 207 >gi|209525726|ref|ZP_03274263.1| multi-component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209493895|gb|EDZ94213.1| multi-component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 774 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 84/164 (51%), Gaps = 6/164 (3%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + L R +R+H+ Q+P++ ++ S + + D+G DD + KPI E++AR+ A+ RR Sbjct: 60 IALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRA 119 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S G + + + Q V PL +E ++E + + + + I ++ Sbjct: 120 TISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 + +E +N V +HI LR KL++ G DP +++ +GY I Sbjct: 180 SI-EEPAADNTVRAHIKSLRNKLKDA-GGDPKLIENVYGIGYRI 221 Score = 34.7 bits (78), Expect = 8.9, Method: Compositional matrix adjust. Identities = 18/70 (25%), Positives = 42/70 (60%), Gaps = 3/70 (4%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 ++L ++IR + +P++ ++++ +T + F +G DD ++KP+ E++AR+ + Sbjct: 545 IDLCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLH 604 Query: 118 RLKVSNNRAE 127 R ++ N AE Sbjct: 605 RSRLWRNIAE 614 >gi|162295946|gb|ABX83919.1| AdeR [Acinetobacter baumannii] Length = 247 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +Q P+I ++ + G DD V KP + E++ARV A+ RR + +N Sbjct: 78 IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 137 Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 I + +D + E + L E +I+ +++ K + ++ + + Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D E V+SH+SKLRKKL+ + F + + R +GY +D Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLKEQGIFQMLVNVRGVGYRLD 238 >gi|116751033|ref|YP_847720.1| two component transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116700097|gb|ABK19285.1| two component transcriptional regulator, winged helix family [Syntrophobacter fumaroxidans MPOB] Length = 236 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 2/116 (1%) Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRD--PEVQGE 145 L+ F +G DD V+KP RE+L RV A+ RR + + DG + + Sbjct: 97 LEGFKAGADDYVSKPFSLRELLMRVEAVLRRAGKIAGDEQVMVSGILFDGGNLLASFRER 156 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L RRE I+ YL +R + V+K ++ ++ D VE V+ H+ KLRKK+ Sbjct: 157 TAELTRREMDIVAYLHRHRDRVVSKKELLKEVWNYADPDVETRTVDIHMLKLRKKI 212 >gi|308234201|ref|ZP_07664938.1| two component transcriptional regulator, winged helix family protein [Atopobium vaginae DSM 15829] Length = 231 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 5/162 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R R S +I ++ S L SG DD + KP + + +LA +A++ RR + + Sbjct: 66 LAREFRQSSTGAIIVLTSRNSELDELVCLSSGADDFIAKPYNPQILLAHIASVLRRVMPM 125 Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S+ +A G I + G+ L + E +IL L+ + + V++TQI A++ Sbjct: 126 SDKQASVLRCGTIELNLKTCTASAHGKTTELTKNELKILTLLIQRQTEVVSRTQIQEALW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE V++N + ++S LR++L V + R LGY I Sbjct: 186 Q-SDEYVDDNTLTVNVSHLRQRLAYIGEPHAVVTHRGLGYCI 226 >gi|218661396|ref|ZP_03517326.1| two-component response regulator protein [Rhizobium etli IE4771] Length = 251 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 5/156 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 R P++ +S + + +G DD + KP E+LARV + RR Sbjct: 94 RKGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPEQDVI 153 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 G + + + G+ PL RE R+LEYLM N G+ V +T + ++ FD Sbjct: 154 YRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP- 212 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ H+S+LR K+ + + R GY I Sbjct: 213 -QTNVIDVHVSRLRSKIEKDFSQPLLKTIRGAGYMI 247 >gi|254487709|ref|ZP_05100914.1| DNA-binding response regulator [Roseobacter sp. GAI101] gi|214044578|gb|EEB85216.1| DNA-binding response regulator [Roseobacter sp. GAI101] Length = 223 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 6/162 (3%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 +L R IR + + P++ ++ S+ + D G DD + KP HRE+ AR+ A+ RR Sbjct: 61 DLLRNIRNRADRTPVLMLTARFSVDDRVSALDLGADDYLVKPFDHRELEARLRALLRRET 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + + + E G L RRE +L L+ + + ++K +++ IY Sbjct: 121 DQKSDVQKVAELSFYPATLSAEHSGNRIELTRREAALLGVLLRHARQTISKERLYEGIYS 180 Query: 180 LFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FDE V N +E +I +LR+K+ ++++R +GY I Sbjct: 181 -FDEVDVGLNAIELYIGRLRRKIAGSGAV--IETQRGMGYRI 219 >gi|241203812|ref|YP_002974908.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857702|gb|ACS55369.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 248 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 5/156 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 R P++ +S + + +G DD + KP E+LARV + RR + Sbjct: 91 RKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPDQDVV 150 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 G + + + G+ PL RE R+LEYLM N G+ V +T + ++ FD Sbjct: 151 YRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP- 209 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ H+S+LR K+ + + R GY I Sbjct: 210 -QTNVIDVHVSRLRSKIEKDYSQPLLKTIRGAGYMI 244 >gi|116251207|ref|YP_767045.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115255855|emb|CAK06936.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 248 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 5/156 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 R P++ +S + + +G DD + KP E+LARV + RR + Sbjct: 91 RKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPDQDVV 150 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 G + + + G+ PL RE R+LEYLM N G+ V +T + ++ FD Sbjct: 151 YRVGDLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP- 209 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ H+S+LR K+ + + R GY I Sbjct: 210 -QTNVIDVHVSRLRSKIEKDYSQPLLKTIRGAGYMI 244 >gi|16761953|ref|NP_457570.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766477|ref|NP_462092.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143440|ref|NP_806782.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415118|ref|YP_152193.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167551911|ref|ZP_02345664.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990273|ref|ZP_02571373.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231775|ref|ZP_02656833.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238132|ref|ZP_02663190.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243002|ref|ZP_02667934.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262866|ref|ZP_02684839.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463615|ref|ZP_02697532.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819761|ref|ZP_02831761.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445795|ref|YP_002042442.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449190|ref|YP_002047173.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472187|ref|ZP_03078171.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736474|ref|YP_002116131.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197247614|ref|YP_002148104.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197262224|ref|ZP_03162298.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197364047|ref|YP_002143684.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242500|ref|YP_002217155.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387607|ref|ZP_03214219.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928260|ref|ZP_03219460.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207858436|ref|YP_002245087.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213027201|ref|ZP_03341648.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213052528|ref|ZP_03345406.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213420412|ref|ZP_03353478.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424348|ref|ZP_03357172.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581572|ref|ZP_03363398.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213614424|ref|ZP_03371250.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647443|ref|ZP_03377496.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855234|ref|ZP_03383474.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289827112|ref|ZP_06545901.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|291080733|ref|ZP_06534499.2| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|54038991|sp|P66796|QSEB_SALTI RecName: Full=Transcriptional regulatory protein qseB gi|54041930|sp|P66795|QSEB_SALTY RecName: Full=Transcriptional regulatory protein qseB gi|25300979|pir||AI0888 probable two-component system response regulator. STY3354 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421733|gb|AAL22051.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16504255|emb|CAD03009.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29139074|gb|AAO70642.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129375|gb|AAV78881.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194404458|gb|ACF64680.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407494|gb|ACF67713.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458551|gb|EDX47390.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711976|gb|ACF91197.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633180|gb|EDX51594.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095524|emb|CAR61089.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197211317|gb|ACH48714.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240479|gb|EDY23099.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289042|gb|EDY28413.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937016|gb|ACH74349.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604705|gb|EDZ03250.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322582|gb|EDZ07779.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205323364|gb|EDZ11203.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331169|gb|EDZ17933.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333781|gb|EDZ20545.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337837|gb|EDZ24601.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205343562|gb|EDZ30326.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205348552|gb|EDZ35183.1| transcriptional regulatory protein QseB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710239|emb|CAR34596.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261248307|emb|CBG26144.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301159731|emb|CBW19250.1| probable two-component system response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914202|dbj|BAJ38176.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087628|emb|CBY97392.1| Transcriptional regulatory protein qseB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225855|gb|EFX50909.1| Two-component system response regulator QseB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613580|gb|EFY10521.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621172|gb|EFY18030.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624235|gb|EFY21069.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628027|gb|EFY24816.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633144|gb|EFY29886.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636278|gb|EFY32986.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643531|gb|EFY40092.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647452|gb|EFY43941.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648637|gb|EFY45084.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653689|gb|EFY50015.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657797|gb|EFY54065.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663898|gb|EFY60097.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669089|gb|EFY65240.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672916|gb|EFY69023.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678093|gb|EFY74156.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681269|gb|EFY77302.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687800|gb|EFY83767.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323131537|gb|ADX18967.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195612|gb|EFZ80789.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199706|gb|EFZ84796.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202545|gb|EFZ87585.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207966|gb|EFZ92912.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212482|gb|EFZ97299.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215036|gb|EFZ99784.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222766|gb|EGA07131.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224152|gb|EGA08445.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230476|gb|EGA14594.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235172|gb|EGA19258.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239212|gb|EGA23262.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244430|gb|EGA28436.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247046|gb|EGA31012.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253472|gb|EGA37301.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256222|gb|EGA39958.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262603|gb|EGA46159.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267302|gb|EGA50786.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269295|gb|EGA52750.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624931|gb|EGE31276.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332990043|gb|AEF09026.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 219 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +L++D L+ DG A G S++ F + SA D ++ L G G + Sbjct: 3 ILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 LREWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ G + + + GE L +E +LE L+ N+G+ + + I +Y Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D+ V N VE H+ LR+ KLG + + + +GY++ Sbjct: 181 -WDDDVSSNAVEVHVHHLRR----KLGSEFIRTVHGIGYTL 216 >gi|163940273|ref|YP_001645157.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862470|gb|ABY43529.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 228 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 27/207 (13%) Query: 18 LFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV------LELPRI---- 66 L DD + S+ E E L++ ED AIEA + + +K + +P + Sbjct: 6 LIVDDDKEIRNLISVYLENEGLKTQKAED--AIEALKLLEEKKFDLIILDIMMPNMDGIE 63 Query: 67 ----IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 64 ACMKIREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKY 123 Query: 121 ---VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 NN++ E G + V +D R V+G L +E IL+ L N+G ++ +I+ Sbjct: 124 NTHTDNNKSILEIGDLTVNTDTRQVWVRGTEVRLTPKEFDILKLLARNKGIVLSVAKIYE 183 Query: 176 AIY-GLFDEAVEENVVESHISKLRKKL 201 A++ F ++ +N V HI+K+R K+ Sbjct: 184 AVWKDAFYKS--DNTVMVHITKIRDKI 208 >gi|312130796|ref|YP_003998136.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] gi|311907342|gb|ADQ17783.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] Length = 225 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 10/155 (6%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 + P++ ++ + L+ + FD G DD + KP RE++ RV ++ +R R + Sbjct: 72 ETPVLLLTAFGELEDKVKGFDLGADDYLTKPFFMRELVLRVQSLTKRKLSGMGRKN---V 128 Query: 132 RVFSD-----GRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 VF D GR E QG+ L RE +IL L G+ V+K ++ I+G E V Sbjct: 129 LVFEDIRVDLGRKTVERQGKEIILTPREFQILVRLCQTPGELVSKAELIEEIWGTTLE-V 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N +E +I+ LR KL + +K GY + Sbjct: 188 NTNTIEVYINFLRNKLDKPFHKQSIKTKVGYGYYL 222 >gi|293375352|ref|ZP_06621634.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|292646108|gb|EFF64136.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] Length = 224 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 17/163 (10%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + I H Q+P++ IS L F G DD + KP +E+ RV A RLK Sbjct: 65 QLIKEIHQHRQIPVLFISAKTEEFDRLLGFALGADDYITKPFSAKEVAFRVKA---RLKT 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G I + +DG + E L +E ++L YL+ + K V+K QI ++G Sbjct: 122 TTKTIQFGNITI-TDGIVSK-NNEPLDLTAKEYKLLMYLVRHANKIVSKEQICHEVWG-- 177 Query: 182 DEAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGY 218 ++ E +N + HI +LRKK+ DP K LGY Sbjct: 178 EDYFEFDNTISVHIRRLRKKIE----VDPSKPKHITTIIGLGY 216 >gi|222107038|ref|YP_002547829.1| two component response regulator [Agrobacterium vitis S4] gi|221738217|gb|ACM39113.1| two component response regulator [Agrobacterium vitis S4] Length = 226 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 5/163 (3%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 +E+ R +RA H +V ++ ++ + + + D G DD + KP E ARV + RR Sbjct: 60 IEVLRCVRARHDKVAILILTARGTPEDKVKGLDLGADDYMIKPFDIGEFEARVRMLLRRQ 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ G + + + R G +P RE +LE L GK VAK I ++ Sbjct: 120 AGLRSSMVSYGAVSLDLNSRSFSAAGVPLDIPARELGLLEVLFMRAGKVVAKEAIIQSLA 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD+ + N +E + S+LRK+L G V + R +GY ++ Sbjct: 180 A-FDDDLSANAIEQYASRLRKRLAPH-GL-TVRTARGIGYYLE 219 >gi|167918857|ref|ZP_02505948.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] Length = 241 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 69/137 (50%), Gaps = 3/137 (2%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-- 125 + +S +P++ +++ + ++G DD V KP +E +ARV A+YRR + Sbjct: 72 KNYSNIPVLILTNAILESEVVAALEAGADDYVIKPPRKQEFVARVKALYRRATETRTLFE 131 Query: 126 -AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E GP R+ + + E L +E I+E L N G+ V++ ++ ++G + Sbjct: 132 LIEIGPYRIQTSEKVVYFHREAITLSPKEYEIIELLARNIGQIVSRDKMVYQVWGRLPDE 191 Query: 185 VEENVVESHISKLRKKL 201 +++HI ++R+KL Sbjct: 192 AAFRTLDTHIYRIRRKL 208 >gi|153940516|ref|YP_001389608.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936412|gb|ABS41910.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295317702|gb|ADF98079.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 227 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 97/208 (46%), Gaps = 21/208 (10%) Query: 29 FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP--------RIIRAHSQVPLIG 77 N EFE + ++ IE FL K + VL LP + IR S+ P+I Sbjct: 24 LNKWEFE---VNVCKDFEKVIECFLKYKPDVVLMDINLPVCDGFYWCKKIRQISKTPIIF 80 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR----AETGPIRV 133 +S S + ++G DD + KP + ++A++ AI RR N + + + Sbjct: 81 VSSRDSNMEIVMAINNGGDDFIQKPFNSEVLIAKLQAIIRRTYEYKNEEAKVLKCDDLLL 140 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D + L + E +L+ LM N+GK V+++++ ++ D V EN + + Sbjct: 141 NLDNATLLYNEKSLELTKNEMLLLKTLMENKGKGVSRSKLMKKLWD-DDIYVNENTLTVN 199 Query: 194 ISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 I++LR +L K G D + +K+ +GY I Sbjct: 200 INRLRNRLE-KFGIKDLIVTKKGIGYII 226 >gi|159035892|ref|YP_001535145.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157914727|gb|ABV96154.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 237 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 81/154 (52%), Gaps = 8/154 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPI 131 VP++ ++ +++ + +G DD V+KP E++ R+ AI RR +V A++G + Sbjct: 78 VPVLFLTARSAVEDRISGLTAGADDYVSKPFSLEEVVLRIRAILRRSQVEPYPGADSGVL 137 Query: 132 R-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 R + D + V L E ++L YLM N G+ V+K QI ++ +D + Sbjct: 138 RYADLQLDEDAHEVRRADRVIDLSPTEFKLLRYLMVNAGRVVSKAQILDRVWN-YDFGGD 196 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +VES++ LRKK+ ++ + + R +GY++ Sbjct: 197 GRIVESYVYYLRKKVDSR-APALIHTIRGVGYTL 229 >gi|330817142|ref|YP_004360847.1| two component transcriptional regulator [Burkholderia gladioli BSR3] gi|327369535|gb|AEA60891.1| two component transcriptional regulator [Burkholderia gladioli BSR3] Length = 341 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/132 (24%), Positives = 68/132 (51%), Gaps = 2/132 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRAETGP 130 VP++ ++ + Q+ + +G DD + +P+ E+ +R+ A R SN+RA+ G Sbjct: 73 HVPIVAMTARDTCQSAAEALKAGADDYLVRPMREAEVQSRIMTAAMRYASDSNDRADFGA 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 R+ + + GE L R+E + Y + + ++ + + I+ L + ++ V Sbjct: 133 YRLDTKTAKIRLHGESVNLTRKEFELAAYFFRHPDQLISHETLLNRIWKLQSD-IDTRTV 191 Query: 191 ESHISKLRKKLR 202 +H+S++RKKL+ Sbjct: 192 ATHVSRIRKKLQ 203 >gi|299068908|emb|CBJ40149.1| Putative DNA-binding response regulator in two-component regulatory system with BasS (basR) [Ralstonia solanacearum CMR15] Length = 216 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 14/203 (6%) Query: 28 GFNS------LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 G+N+ ++ ++W+ S++ + + G+G LE R A S VP+I S Sbjct: 20 GYNTTWVRRLMDAQKWMTSNSFDAIVLDLGLPDGEGHLFLEELRA--AQSDVPVIIASAR 77 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDP 140 +L L D G DD + KP E++AR+ A+ RR S NR G + V + Sbjct: 78 DALSERLKGLDEGADDFLVKPFPVDELIARLRAVLRRHAGQSTNRWNVGSLVVEPSQKRV 137 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 G V L RE ++L L+ + V + + A+Y + V N +E I Sbjct: 138 TQDGNVVELTPREYQLLFELVRRAHRWVTRETLMDALYREGNR-VSANALEVVI----HH 192 Query: 201 LRNKLGFDPVDSKRFLGYSIDWN 223 LR KLG + + R +GY I N Sbjct: 193 LRGKLGEGVIQTIRGVGYMIGGN 215 >gi|291543637|emb|CBL16746.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. 18P13] Length = 236 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 14/224 (6%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 + DD ++D + DG + F + + +A D+ ++ + G L + Sbjct: 7 IADDEKNIRDLIKSFLESDGYRVWAFETGDALMGAFQAAPADLVILDIMM--PGTDGLTI 64 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 + +RA + VP+I ++ S + G DD + KP +L RV ++ RR+++++ Sbjct: 65 CQQLRAKTDVPIIMLTAKDSEYDYVQGITIGSDDYLTKPFRPTTLLMRVRSLLRRMEMNS 124 Query: 124 NRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R G + ++ G+ + E R+L Y+M GK A+ ++ Sbjct: 125 RRPVQPEEPDDLVVGDLTFSAEANTISCNGKGIGFTQTELRMLSYMMQKPGKAYARDKLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I+G ++ VE V + + ++R+KL L V + GY Sbjct: 185 ETIWG-YETEVETRVTDETLRRIRRKL--SLAGSSVCVQTIWGY 225 >gi|302876607|ref|YP_003845240.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307687281|ref|ZP_07629727.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302579464|gb|ADL53476.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 224 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 4/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR Q P+I ++ + + G DD + KP +E++ARV A+ RR + Sbjct: 62 EILKWIRREHQTPVIMLTAKSDTFDKVLGLELGADDYIVKPFDPKELIARVKAVLRRTII 121 Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ E + + D + E +P +E ++ +L +N+ K + Q+ ++ Sbjct: 122 TDKVKEKIIFQGLVIDMDSYTIYYKDEEMRMPPKEFELIYFLASNKNKVFTREQLLCEVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203 G +D + V+ HI +LR+KL++ Sbjct: 182 G-YDYPGDSRTVDVHIKRLREKLQD 205 >gi|238794125|ref|ZP_04637741.1| Transcriptional regulatory protein tctD [Yersinia intermedia ATCC 29909] gi|238726523|gb|EEQ18061.1| Transcriptional regulatory protein tctD [Yersinia intermedia ATCC 29909] Length = 221 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 13/166 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + +P++ ++ + + + G DD + KP E+ AR+ A+ RR Sbjct: 60 LARLRKRGQTLPVLLLTARTEVADRVKGLNLGADDYLTKPFEMDELEARIRALLRR---- 115 Query: 123 NNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + TG + F D + + + L RE +L LM RG+ VAK Q+F I Sbjct: 116 -SVGGTGQVVQFGDLTYHDEGYFLLADKPLALTPRESAVLTSLMHRRGRPVAKQQLFEQI 174 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + L D+A E+ +E ++ ++RKKL + + R LGYS++ Sbjct: 175 FTLSDDANPES-IELYVHRVRKKLHGS--NVSIQTLRGLGYSLECT 217 >gi|219854585|ref|YP_002471707.1| hypothetical protein CKR_1242 [Clostridium kluyveri NBRC 12016] gi|219568309|dbj|BAH06293.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 240 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 6/134 (4%) Query: 94 GVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPR 151 G DD + KP RE+LARV AI RR +K + G I + D + GE L Sbjct: 108 GADDYITKPFSVRELLARVKAILRRTAIKTLDKYYVFGDISIDFDRHEVLKNGEKVELTL 167 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-- 209 +E +L+ L+ N+G+ + + + I+G ++ E V+ HI +R+K+ + P Sbjct: 168 KEFELLQMLIKNKGRVMTRDFLLDKIWG-YEYVGETRTVDVHIRHIRQKIES-CDKKPKY 225 Query: 210 VDSKRFLGYSIDWN 223 +++ R +GY +W Sbjct: 226 IETIRGIGYRFNWK 239 >gi|254481325|ref|ZP_05094570.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] gi|214038488|gb|EEB79150.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] Length = 231 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 13/183 (7%) Query: 45 DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 DV ++ L G+ G ++++ R I ++ P + +S + + SG DD + KP Sbjct: 50 DVWVVDRMLPGRDGLQLIQDLREI--GNETPALVLSALGEVDDRVKGLRSGADDYLVKPF 107 Query: 104 HHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILE 158 E+LAR+ A+ RR NN+ T ++V D Q G L RE ++LE Sbjct: 108 AMDELLARLQALSRR--GVNNQDGTTRLQVQDLVMDLLKQNVSRRGLAVLLQPREYKLLE 165 Query: 159 YLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217 YLM + G+ V +T + ++G FD + NV++ H+S+LR+K+ + + R G Sbjct: 166 YLMRHAGQVVTRTMLLEHVWGYNFDP--QTNVIDVHVSRLRQKIDKDFDTSLLLTVRGAG 223 Query: 218 YSI 220 Y + Sbjct: 224 YRL 226 >gi|169826434|ref|YP_001696592.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168990922|gb|ACA38462.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 230 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 70/143 (48%), Gaps = 11/143 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA +P+I +S + G DD V KP H E+LARV + RR + Sbjct: 69 IRAERNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRRYVQLGTYS 128 Query: 127 ETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E G +V DG ++ ++GE L E +I E LM N G+ + +I+ ++ Sbjct: 129 E-GATKVEIDGLILDEDAKEIILEGEPVRLTPIEYKITELLMKNAGRVFSIREIYERVWN 187 Query: 180 LFDEAVE-ENVVESHISKLRKKL 201 +EA EN+V HI K+R+K+ Sbjct: 188 --EEAYNAENIVAVHIRKIREKI 208 >gi|119503823|ref|ZP_01625905.1| two-component response regulator PhoB [marine gamma proteobacterium HTCC2080] gi|119460331|gb|EAW41424.1| two-component response regulator PhoB [marine gamma proteobacterium HTCC2080] Length = 234 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 9/189 (4%) Query: 23 GVSLEGFNSLEFEE-----WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLI 76 + EGF LE + WL + D+ ++ L G G ++L + A +P+I Sbjct: 20 ALETEGFEVLEAADTQKAYWLITDQDPDLVLLDWMLPGGSGIELLSRLKKEEATQSLPVI 79 Query: 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVF 134 ++ + + D G D + KP +E+LAR+ I+R + N++ G + + Sbjct: 80 MVTAKAREEDIIQGLDMGAHDYITKPFSLKELLARIRTIFRHTEDDDVNHQLRVGDLVLE 139 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D R + +V L E ++L++ M + + A+ QI I+G + V+ V+ I Sbjct: 140 LDNRRVTLGSQVLMLGPTEFKLLQFFMLHPERAHARKQILQHIWG-NNACVDARTVDVSI 198 Query: 195 SKLRKKLRN 203 +LRK L++ Sbjct: 199 RRLRKTLQS 207 >gi|332798919|ref|YP_004460418.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332696654|gb|AEE91111.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 232 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 6/140 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP++ ++ + G DD + KP E++AR+ ++ RR N Sbjct: 70 IRKGSMVPILMLTAKGDEIDKVTGLRLGADDYLTKPFSINELMARIESLIRRYTTFNQST 129 Query: 127 ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + + + R V GE L +E +L +L +N+G+ K QI++ ++ Sbjct: 130 QLDILNLKNMVIDKENRTVCVNGESVNLTGKEFDLLVFLASNKGRVFTKKQIYTQVWE-G 188 Query: 182 DEAVEENVVESHISKLRKKL 201 + A ++N + S ISKLRKK+ Sbjct: 189 EYAFDDNNIMSFISKLRKKI 208 >gi|320547243|ref|ZP_08041536.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] gi|320448131|gb|EFW88881.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] Length = 231 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 9/154 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +++ ++R S VP+I ++ S + F +G DD KP ++ RV AI Sbjct: 57 GTNGIDIAGLLRKRSDVPIILLTARDSDDDFVKGFSAGADDYFTKPFSPLKLSLRVKAIL 116 Query: 117 RRLKVS---NNRAETGPIR----VFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R ++ +N+ + + V SD R QG+ L E +L+ LM++ + V Sbjct: 117 ARTPMTQEHSNKDSSDSLSYDELVLSDKERSATYQGKNIKLTNTEFELLKVLMSHSEEAV 176 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 ++ ++ ++G +D VE V + I +LRKKLR Sbjct: 177 SRDELLRQVWG-YDSEVETRVTDDTIKRLRKKLR 209 >gi|317493676|ref|ZP_07952097.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918619|gb|EFV39957.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 220 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 9/220 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D L+ DG A G S++ F E ++ L + A+ L G L+ Sbjct: 4 LLIEDDKLIGDGIKAGLIKMGFSVDWFT--EGKQGLNALDSAPYDAVVLDLSLPGMDGLD 61 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R R + P++ ++ +L+ + G DD + KP E+ AR+ A+ RR Sbjct: 62 ILRKWRQNGHDEPVLILTARDALEQRVAGLQQGADDYLCKPFALIEVAARLQALIRRRHG 121 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T GP+ + +GE L +E +LE L+ N G+ + + I IY Sbjct: 122 QVQTTLTHGPVSLDPINLTVTHEGEAIYLKPKEFALLELLLRNEGRVLPRPLIEEKIYN- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D+ V N +E HI LRK K G + + +GY++ Sbjct: 181 WDDDVSSNAIEVHIHHLRK----KFGSSFIRTVHGIGYTL 216 >gi|313889059|ref|ZP_07822717.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844932|gb|EFR32335.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] Length = 230 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL------K 120 +R + +P+I +S + + + G DD + KP + E+ ARV ++ RR Sbjct: 68 MREKTNIPIIVLSAKGEVTDKIVGLNVGADDYITKPFNAVELTARVNSLIRRYFSLGASD 127 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G + +F D ++ V+ E+ L E +IL L N G+ + +I+ ++ Sbjct: 128 IKTGDLKIGRVSIFDDSKEVRVEDELANLTPYEYKILYLLAKNPGRVFSSNEIYERVWE- 186 Query: 181 FDEAVE-ENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +EA++ ++ HIS LR K+ N D + S +GY I+ Sbjct: 187 -EEAIDVRKIISVHISHLRDKIEINPRKPDLIKSVYGMGYKIE 228 >gi|300867627|ref|ZP_07112275.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC 6506] gi|300334388|emb|CBN57445.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC 6506] Length = 413 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 81/164 (49%), Gaps = 6/164 (3%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + L R +R+ H+ P++ ++ S + ++ D+G DD V KP E+ AR+ AI RR Sbjct: 60 ISLCRQLRSRHTTTPILLLTSCDSSASKIEGLDAGADDYVVKPFDFLELSARIRAILRRG 119 Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ETG +R+ + + + L +E +LE + N + ++ I ++ Sbjct: 120 SAALPPILETGKLRLNPNNYEVIYNSQPLNLTPKEYALLELFLRNTQRVFSRRAILDHLW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 F+E E+ V +HI LR KL+ G P V++ LGY + Sbjct: 180 S-FEEPPAEDTVRAHIKGLRSKLKAA-GAPPDLVETVYGLGYRL 221 >gi|237799166|ref|ZP_04587627.1| DNA-binding response regulator QseB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022021|gb|EGI02078.1| DNA-binding response regulator QseB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 220 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 24/218 (11%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL +GY + +DG+S ++L E + + ++ F +L R +R Sbjct: 19 ALNTEGYTLDWLEDGLS--ALHALRSEPFDLLLLDLGLPRMDGF---------DLLRQLR 67 Query: 69 AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 A +P++ ++ + D+G DD + KP E+ ARV A+ RR S RA Sbjct: 68 AEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQ 124 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E I + + G P+ E ++L LM GK V + ++ +YG + E Sbjct: 125 PLLEHAGISLDPASQQVSFHGCEVPMTPMEYQLLHQLMIRPGKVVTRERLSDTLYG-WQE 183 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE N +E I LRKKL +L + + R +GY ++ Sbjct: 184 KVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217 >gi|227536801|ref|ZP_03966850.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227243357|gb|EEI93372.1| two component response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 224 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 4/151 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G VL+ + Q +I IS +L + G DD + KP H E++AR+ A Sbjct: 57 GNGMHVLQTLK--EQEKQDGVIIISAKDALDDKIKGLQIGADDYLTKPFHLSELVARIYA 114 Query: 115 IYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR + N N +++ + V V P ++E +L Y + N+ K ++K+ + Sbjct: 115 VIRRKQFQNSNIIIQNELQIDLLAKTVSVGDHVVPFTKKELDLLLYFIGNKNKVISKSTL 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRN 203 + G + D + V +HI L+KKL++ Sbjct: 175 AEHLSGDVADMLDNHDFVYAHIKNLKKKLQD 205 >gi|225388695|ref|ZP_03758419.1| hypothetical protein CLOSTASPAR_02431 [Clostridium asparagiforme DSM 15981] gi|225045293|gb|EEG55539.1| hypothetical protein CLOSTASPAR_02431 [Clostridium asparagiforme DSM 15981] Length = 230 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 17/175 (9%) Query: 40 SSAREDVSAIEA------FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDS 93 + ARE +S E L+ G V + R IR + P++ ++ ++ L+ + Sbjct: 38 AEAREHLSRCEPDAIILDILLPDGSGV-DFCREIRECTAAPILFLTSVAGVEKALEGIRA 96 Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSN-----NRAETGPIRVFSDGRDPEVQGEVFP 148 G DD +NKP H +LAR+ A +RR ++ + GP+ + G Sbjct: 97 GGDDYLNKPFHIELLLARIEAFWRRDEIMKRMKPADTFTCGPLTFQMTACTACLDGADLM 156 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN--VVESHISKLRKKL 201 L +E +L L N GK V+K IF I+G + + N + + +++L++KL Sbjct: 157 LTVKEFSVLLLLAQNEGKMVSKETIFETIWG---QPLNGNSQALYAMVARLKRKL 208 >gi|224438071|ref|ZP_03659010.1| phosphate regulon transcriptinal regulatory protein PhoB, putative [Helicobacter cinaedi CCUG 18818] gi|313144515|ref|ZP_07806708.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] gi|313129546|gb|EFR47163.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818] Length = 222 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 107/229 (46%), Gaps = 15/229 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLE--GFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 +F+L DD ++ + L+ + +L+ GF SL E W ++ A+E S + ++ E Sbjct: 2 IFILEDDEGILS---LVLYALNSANLKAKGF-SLPSEFW-EAMAKESPSCVVLDVMLPQE 56 Query: 59 KVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 L + +R + + +P+I ++ S + DSG DD + KP E++AR+ A+ Sbjct: 57 DGLSVLHKMRQNHKSKNIPVIMLTALGSEFDKIKGLDSGADDYLTKPFSALELIARIKAL 116 Query: 116 YRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR N+ G ++ + GE L +E +L LM++ + ++ ++ Sbjct: 117 LRRSHTQNDCEMSYGDLKYSKTIHSVSIGGESLHLTLKEFELLGLLMSSTNRVFSREELL 176 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 I+G ++ HI+ LR KL K G + + R +GY + N Sbjct: 177 EIIWGYNISGTR--TIDIHINTLRSKL-GKYG-KHIKTIRGVGYQFNTN 221 >gi|218133944|ref|ZP_03462748.1| hypothetical protein BACPEC_01833 [Bacteroides pectinophilus ATCC 43243] gi|217991319|gb|EEC57325.1| hypothetical protein BACPEC_01833 [Bacteroides pectinophilus ATCC 43243] Length = 225 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 98/210 (46%), Gaps = 28/210 (13%) Query: 33 EFEEWLQSSAREDVS------AIEAFLIGKGEKVL---ELPRI--------IRAHSQVPL 75 E +E L +S E V+ A E L + + VL +P I +R S+VP+ Sbjct: 16 ELKELLDNSGYEAVALENFDNACEGILAAEADLVLLDINIPHINGELLLKQLRTRSEVPV 75 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS 135 I ++ S + G DD V KP + +L R+ AI++RL S+ G I VF Sbjct: 76 IMVTSRDSEADEVLSMSYGADDYVTKPYNPTILLLRINAIFKRL--SSRHGSDGTI-VFR 132 Query: 136 DGRDPEVQGEV-------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 D + +G + L + E I YL++N+ + V++ ++ + ++ E + +N Sbjct: 133 DMQILPQKGVIRYNSGSEILLTKNEMTIFMYLLSNKDRIVSRDELMTELWN-NQEYLNDN 191 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +IS+LR + D +++++ GY Sbjct: 192 ALTVNISRLRAHFKEAGLEDVIETRKGQGY 221 >gi|330897339|gb|EGH28758.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 220 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 13/166 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+L R +RA + +P++ ++ + D+G DD + KP E+ ARV A+ RR Sbjct: 60 LDLLRQLRAEALTLPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR- 118 Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S RA E I + + +G P+ E ++L LM GK V + ++ + Sbjct: 119 --SQGRAQPLLEHAGISLDPASQQVSFKGSEVPMTPMEYQLLHQLMIRPGKVVTRERLSN 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +YG + + VE N +E I LRKKL +L + + R +GY ++ Sbjct: 177 TLYG-WQDKVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217 >gi|253579947|ref|ZP_04857215.1| two component transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251848946|gb|EES76908.1| two component transcriptional regulator [Ruminococcus sp. 5_1_39BFAA] Length = 230 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 97/207 (46%), Gaps = 9/207 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ + + EE ++ + + I L+ LE Sbjct: 6 LVVDDEKLIVKGIRFSLEQDGMEVDC--AYDGEEAVEKAKDKKYDIILLDLMLPKMDGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S VP++ ++ + + G DD + KP + E+ AR+ AI RR Sbjct: 64 VCQQIREFSNVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRAGSD 123 Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E G +R+ +GR + G+ L +E +LE L+ N K ++ + + Sbjct: 124 HEEKEKAKSIQVGDLRMDCEGRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203 ++G ++ + V+ HI +LR+K+ Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIET 209 >gi|224543644|ref|ZP_03684183.1| hypothetical protein CATMIT_02854 [Catenibacterium mitsuokai DSM 15897] gi|224523417|gb|EEF92522.1| hypothetical protein CATMIT_02854 [Catenibacterium mitsuokai DSM 15897] Length = 225 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 2/156 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +I + ++ +P++ +S + DSG DD + KP E+ ARV ++ RR + Sbjct: 65 IKQIRKTNTTLPILILSAKDREIDKVRGLDSGCDDYMTKPFGVLELAARVRSLLRRSQHH 124 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + +T + + QGE L +E ++L YL+ N+ + V + ++ + I+G +D Sbjct: 125 SKVIKTTSLEIDKSKHIILKQGEKLELTHKEYQLLLYLVENKERVVEREELLNNIWG-YD 183 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E ++ HI LR KL + G + + R +GY Sbjct: 184 FVGESRALDVHIRSLRAKLGDD-GHHYIKTIRSVGY 218 >gi|209548528|ref|YP_002280445.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534284|gb|ACI54219.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 248 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 5/156 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R P++ +S + + +G DD + KP E+LARV + RR + Sbjct: 91 RKAIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPDQDVV 150 Query: 128 TGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 + D EV+ G+ PL RE R+LEYLM N G+ V +T + ++ FD Sbjct: 151 YRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP- 209 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ H+S+LR K+ + + R GY I Sbjct: 210 -QTNVIDVHVSRLRSKIEKDYSQPLLKTIRGAGYMI 244 >gi|167751513|ref|ZP_02423640.1| hypothetical protein EUBSIR_02514 [Eubacterium siraeum DSM 15702] gi|167655321|gb|EDR99450.1| hypothetical protein EUBSIR_02514 [Eubacterium siraeum DSM 15702] Length = 225 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 3/149 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETG 129 P++ ++ + + F +G DD + KP+ E+L R++A+ RR ++N ++ G Sbjct: 72 CNTPVLMVTARETSADKIAGFRAGTDDYMVKPVDDEEMLLRISALLRRSNIANEHKLHAG 131 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + D G LP +E +L L++ + K + Q+ ++ + E +E Sbjct: 132 NTVLDYDALTVTCGGVTHELPNKEFMLLFKLLSYQNKIFTRRQLMDELWDMETET-DERT 190 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ HI++LR++ R+ F+ V + R LGY Sbjct: 191 IDVHINRLRERFRDNEDFEIV-TVRGLGY 218 >gi|145631584|ref|ZP_01787350.1| transcriptional regulatory protein [Haemophilus influenzae R3021] gi|144982784|gb|EDJ90310.1| transcriptional regulatory protein [Haemophilus influenzae R3021] Length = 221 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 2/133 (1%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNRAET 128 H VP++ ++ +L + SG DD + KP E+ AR+ A I RR ++ E Sbjct: 70 HQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYGYHHSVIEQ 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 +++ + R + + L RE ++LE LM N+ + ++++ I + +DE + Sbjct: 130 AGVKLDQNQRSVWLNNQPISLTSREYKLLELLMLNKDRVLSRSSIEEKLSS-WDEEISSG 188 Query: 189 VVESHISKLRKKL 201 ++ HI LR+KL Sbjct: 189 ALDVHIYNLRQKL 201 >gi|134099376|ref|YP_001105037.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291009928|ref|ZP_06567901.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133911999|emb|CAM02112.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 220 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 16/167 (9%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R +R P++ ++ + + + G DD V KP E++AR+ A+ RR Sbjct: 60 DLCRRMRQRYDRPILVVTARTDTRARIHGLNLGADDYVVKPYDVGELIARIHAVARR--- 116 Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S R ET GPI V D R+ V G L R+E +L L G ++ QI Sbjct: 117 SAPRGETATPTRHAGPISVDVDSREATVDGRPVQLTRKEFDLLAMLARQPGVVFSRGQIL 176 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 S ++ + + +E H++ LR KLG D V + R +GY + Sbjct: 177 SEVWSTHWQG-SQRTLEVHVA----SLRTKLGLPDAVQTVRGVGYRL 218 >gi|114766934|ref|ZP_01445854.1| DNA-binding response regulator CtrA [Pelagibaca bermudensis HTCC2601] gi|114540841|gb|EAU43903.1| DNA-binding response regulator CtrA [Roseovarius sp. HTCC2601] Length = 179 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 3/123 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VL R+ R P++ +S + + F G DD + KP H E++AR+ AI Sbjct: 59 GHEVLRQLRMARI--STPILILSGADDTDSKIKGFGFGADDYLTKPFHRDELVARIHAII 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR K S + TG I V D + EV G+ L +E ++LE L +G + K Sbjct: 117 RRSKGHSQSVIRTGKISVNLDAKTVEVGGKSVHLTGKEYQMLELLSLRKGTTLTKEMFLK 176 Query: 176 AIY 178 +Y Sbjct: 177 HLY 179 >gi|83643472|ref|YP_431907.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631515|gb|ABC27482.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 226 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 7/165 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L + R++RA S+ P++ +S + + +G DD + KP E+LAR+ A+ RR Sbjct: 60 LSVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRS 119 Query: 120 KVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + T + + R + G L RE R+LEY M N G+ + +T + Sbjct: 120 QQQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEK 179 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ FD + NV++ HIS+LR K+ + + R GY + Sbjct: 180 VWDYHFDP--QTNVIDVHISRLRAKIDKDFETPLLHTIRGAGYVL 222 >gi|53725462|ref|YP_102584.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|67641947|ref|ZP_00440711.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|121601090|ref|YP_992691.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|124386179|ref|YP_001026513.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126438503|ref|YP_001058604.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126448789|ref|YP_001080208.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|134282711|ref|ZP_01769414.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|167002007|ref|ZP_02267797.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|167720019|ref|ZP_02403255.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] gi|167739029|ref|ZP_02411803.1| DNA-binding response regulator [Burkholderia pseudomallei 14] gi|167816242|ref|ZP_02447922.1| DNA-binding response regulator [Burkholderia pseudomallei 91] gi|167824621|ref|ZP_02456092.1| DNA-binding response regulator [Burkholderia pseudomallei 9] gi|167894727|ref|ZP_02482129.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] gi|167903130|ref|ZP_02490335.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] gi|167911365|ref|ZP_02498456.1| DNA-binding response regulator [Burkholderia pseudomallei 112] gi|167919386|ref|ZP_02506477.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] gi|217423692|ref|ZP_03455193.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|226196289|ref|ZP_03791872.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|237811863|ref|YP_002896314.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|254180143|ref|ZP_04886742.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|254188446|ref|ZP_04894957.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|254261289|ref|ZP_04952343.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] gi|254297977|ref|ZP_04965430.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|52428885|gb|AAU49478.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|121229900|gb|ABM52418.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|124294199|gb|ABN03468.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126217996|gb|ABN81502.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126241659|gb|ABO04752.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|134245797|gb|EBA45888.1| DNA-binding response regulator [Burkholderia pseudomallei 305] gi|157807220|gb|EDO84390.1| DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|157936125|gb|EDO91795.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|184210683|gb|EDU07726.1| DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|217393550|gb|EEC33571.1| DNA-binding response regulator [Burkholderia pseudomallei 576] gi|225931687|gb|EEH27691.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|237503183|gb|ACQ95501.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|238522974|gb|EEP86415.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|243062252|gb|EES44438.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|254219978|gb|EET09362.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 231 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 3/134 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAE 127 + +P++ +++ ++ ++G DD + KP RE +ARV A+ RR +S E Sbjct: 72 APLPILVLTNAVLETDLVEALEAGADDYLIKPPREREFVARVNALRRRASISKQFEGTIE 131 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G R+ + R + GE PL +E I+E L + G+ V + I S ++G E Sbjct: 132 IGGYRIATVERAVYLAGERIPLSPKEYEIVELLARHVGQVVPRKTIISRVWGRAAEEEVS 191 Query: 188 NVVESHISKLRKKL 201 +++HI ++R+K+ Sbjct: 192 RSLDTHIYRIRRKM 205 >gi|332885785|gb|EGK06031.1| hypothetical protein HMPREF9456_02295 [Dysgonomonas mossii DSM 22836] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 11/154 (7%) Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 EL + IRA H ++P+I ++ + LD FDSG DD + KP RE+ AR++ + +R Sbjct: 62 ELCKEIRAVHPEIPIIMLTALGTTDDKLDGFDSGADDYMVKPFDLRELNARISILLKRKN 121 Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 V + E I++ D + L +E +L+Y+M N + +++T+I Sbjct: 122 GVSATVKTDHLEYADIKLNLDNKTVTRGDREMRLTPKEFNLLQYMMLNPERVLSRTEISE 181 Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 ++ F+ N ++ +I+ LR K+ GFD Sbjct: 182 KVWDTHFNTGT--NFIDVYINYLRVKIDK--GFD 211 >gi|317122420|ref|YP_004102423.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592400|gb|ADU51696.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 235 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 109/231 (47%), Gaps = 20/231 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIG- 55 +++DD A ++ + LF + GF E E+ ++ + R D+ ++ L G Sbjct: 3 ILVVDDEAPMR-ALLRLF----LEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLPGI 57 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G V RI+R S VP+I ++ ++ + ++G DD + KP E+LAR+ A+ Sbjct: 58 DGWAVC---RILRRESDVPVIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAV 114 Query: 116 YRRL-KVSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR KV +R GP+ + R+ G L +E +L L + G+ + + Sbjct: 115 LRRTPKVEGRPADRVIVGPLLIDVPAREAYCHGRRLNLTPKEFDLLALLARHPGQVLDRA 174 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 +I ++G +D + V++H+ LR KL +++ R +GY ++ Sbjct: 175 RIIERVWG-WDYDGDVRTVDTHVKTLRAKLVAAGCSRHLIETVRSIGYRLN 224 >gi|309778273|ref|ZP_07673202.1| DNA-binding response regulator DltR [Erysipelotrichaceae bacterium 3_1_53] gi|308913961|gb|EFP59772.1| DNA-binding response regulator DltR [Erysipelotrichaceae bacterium 3_1_53] Length = 228 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 5/138 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNN 124 R +P++ I+ +L ++ D G DD + KP H +E+LARV A+ RR +++S + Sbjct: 70 RKGISIPILIITAMSTLDNRVEGLDGGADDYLVKPFHIKELLARVRALTRRPANIQLS-S 128 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + + G + D R L +E + M N ++ Q+ I+G E Sbjct: 129 KLQYGDLTFDKDSRTLSTPNNSLLLTSKETELTFVFMQNPETLFSREQLILKIWGSSSE- 187 Query: 185 VEENVVESHISKLRKKLR 202 VE V+S+IS LRK+L+ Sbjct: 188 VETGNVDSYISFLRKRLK 205 >gi|302672185|ref|YP_003832145.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302396658|gb|ADL35563.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 233 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 15/153 (9%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR SQVP+I +S + + + G DD + KP +E++ARV A+ RR K Sbjct: 65 QVCREIRTKSQVPIIMLSAKGEVFDKVLGLEMGADDYMEKPFDSKELVARVKAVLRRYKP 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQ-----------GEVFPLPRRERRILEYLMANRGKRVAK 170 + +V R P+++ GE +P +E +L +L A+ + Sbjct: 125 QVQEIQESDDKVV---RYPDLEINMTNYSVKYMGERVDMPPKELELLYFLAASPNHVFTR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 Q+ I+G ++ + V+ HI +LR+KL + Sbjct: 182 EQLLDQIWG-YEYIGDTRTVDVHIKRLREKLSD 213 >gi|302873353|ref|YP_003841986.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307688477|ref|ZP_07630923.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302576210|gb|ADL50222.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 214 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 14/142 (9%) Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 I++ +P++ ++ SLQ L SG +D + KP E++ARV I RR NN+ Sbjct: 63 IVKHIKAIPVMFVTAKDSLQDKLQGLSSGAEDYLVKPFEILELIARVNIILRR----NNK 118 Query: 126 AE---TGPIRVFSDGRD---PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G +RV R +++ E+ P +E +LE L+ NR +++ ++ +G Sbjct: 119 NDDFILGLVRVNFKCRKVFFNDIEIEMTP---QEYMLLEVLITNRNIAMSREKLLELAWG 175 Query: 180 LFDEAVEENVVESHISKLRKKL 201 FD + V+ HI KLRKKL Sbjct: 176 -FDYEGDTRTVDVHIQKLRKKL 196 >gi|291087739|ref|ZP_06572087.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1] gi|291074166|gb|EFE11530.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1] Length = 236 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 96/218 (44%), Gaps = 6/218 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D G +G L E ++ + + I + ++ G E Sbjct: 18 LVVDDDIKLTQSVCTCLNDSGYEAKG--CLSAEAAYEAMYSKMYNLIISDIMMPGTDGFE 75 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +R + +P++ IS L + FD G+DD + KPI E+L RV A+ R + Sbjct: 76 FAETVRGLNKTIPILFISARDDLPSKKKGFDLGIDDYMVKPIDFSELLMRVRALLRLANI 135 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +R + +D R V G+ P+ RE IL L++ +++Q+ +G+ Sbjct: 136 EESRKIVICDTALDADARTIIVGGDEIPVTTREFNILHKLLSYPNHTFSRSQLMDEFWGV 195 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + V+ +I+KLR K F+ + + R LGY Sbjct: 196 -ESDTGLRAVDVYITKLRDKFSACHDFE-IKTVRGLGY 231 >gi|255102164|ref|ZP_05331141.1| two-component system response regulator [Clostridium difficile QCD-63q42] Length = 226 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 110/228 (48%), Gaps = 27/228 (11%) Query: 15 YIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAI-EAFLIGKGEKVL---ELPRI--- 66 Y L +D + L +L FE+W + +D + + F+ K + VL LP Sbjct: 2 YRILLVEDDIDLSKEIALAFEKWGFKVELIDDFEVVLDEFIDKKPDVVLLDVNLPLYNGF 61 Query: 67 -----IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 IRA S VPLI +S S + ++G DD + KP ++ ++ I RR+ Sbjct: 62 YWCEKIRAISNVPLIFLSSRDSDMDLIMGINNGADDYITKPFSIEILVTKINGIIRRVY- 120 Query: 122 SNNRAETGPI-----RVFSDGR---DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N +++ I +F G+ + + + L + E +IL L+ N+ + V++ + Sbjct: 121 --NYSDSNSILYCEDLMFDVGKGIIKHKYKDKSIELTKNEIKILTLLLKNKNRVVSRESL 178 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 ++ DE V +N + ++++LR K++ +LGFD + +K+ +GY I Sbjct: 179 MMTLWD-NDEFVTDNALTVNMNRLRSKVK-ELGFDDFIKTKKGIGYII 224 >gi|209527274|ref|ZP_03275784.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209492262|gb|EDZ92607.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 246 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 12/159 (7%) Query: 51 AFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109 + LI L+L R++R H Q VP++ I + + + ++G DD + KP RE + Sbjct: 71 SLLILDATNGLDLCRMLRHHGQSVPILIIGNKENANNCAFYLEAGADDYLTKPFSIREFI 130 Query: 110 ARVAAIYRRLKVSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 AR A+ RR ++ GP+ ++ + V+GE L ++ R+LE ++ Sbjct: 131 ARCRALIRRQRIGKF---PGPVMLQYKDIILYQEECRVIVRGEEVQLSPKQFRLLELFLS 187 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + ++ Q+ I+G D + V+ HI LR+KL Sbjct: 188 YPRRVWSREQLLDVIWGT-DFVGDSKTVDVHIRWLREKL 225 >gi|196041826|ref|ZP_03109115.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027320|gb|EDX65938.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 225 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQHAQIQYHGILWDEARHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDDHLKTVYGVGYRW 220 >gi|319936362|ref|ZP_08010778.1| hypothetical protein HMPREF9488_01611 [Coprobacillus sp. 29_1] gi|319808477|gb|EFW05029.1| hypothetical protein HMPREF9488_01611 [Coprobacillus sp. 29_1] Length = 226 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 4/138 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123 +R S VP+ +S + L F+ G DD + KPI + A++ AI R K S+ Sbjct: 67 VRQTSDVPIFMMSAKSAKSDKLMGFELGADDYMEKPIDPDILCAKIRAILTRHSKDKQSD 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 +G IR+ G ++ ++ L +E +L + N GK + K +F+ I+G+ D Sbjct: 127 QIINSGAIRIDVAGHKVYLKNKLLDLNVKEYALLMLFIENAGKTLHKDYLFNEIWGM-DS 185 Query: 184 AVEENVVESHISKLRKKL 201 E + HI LR K+ Sbjct: 186 ESENQTLTVHIKMLRSKI 203 >gi|293400068|ref|ZP_06644214.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306468|gb|EFE47711.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 228 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 105/221 (47%), Gaps = 18/221 (8%) Query: 16 IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSA--IEAFLIGKGEKVL---ELPRI---- 66 +A+ DD + LE ++ +EW + DV+ ++ + VL LP I Sbjct: 10 VAIVEDDEIILEELSNC-LKEWNFEVNKIDVAKDILQQLTTVNCDIVLLDVHLPNINGIS 68 Query: 67 ----IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R S P+I IS + + ++ G DD + KP ++A++ A RR++ Sbjct: 69 VCRQFRKFSNAPVIFISSDADRMSMVSAYEYGGDDYIVKPFDKMVLIAKLNAFIRRMQQE 128 Query: 123 NNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ V + R ++ QG++ + + E +ILE LM+N ++++ + A++ Sbjct: 129 ADKEVLVWRGVELNLRTYQLKYQGKMMEITKNEMKILELLMSNPHVVISRSDMMMALWN- 187 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 D V++N + ++ +LRKKL + D + +K+ GY I Sbjct: 188 SDCYVDDNTLSVNVGRLRKKLEDVFRIDDFIHTKKGTGYYI 228 >gi|289422565|ref|ZP_06424408.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptostreptococcus anaerobius 653-L] gi|289157137|gb|EFD05759.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptostreptococcus anaerobius 653-L] Length = 226 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 8/168 (4%) Query: 58 EKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 E L + + +RA S+ +P+I ++ S + DSG DD V KP E+++R+ A Sbjct: 56 EDGLSILKKLRASSKTRNIPIIMLTAKGSEYDKVIGLDSGADDYVTKPFGMMELISRIKA 115 Query: 115 IYRRLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + RR + ++ G + + + + V + L +E +L LM N + + + Sbjct: 116 VMRRSSIETDKKCLVIGDVMLDPERHEVRVDQDQVSLTLKEFDLLYLLMKNPNIVMTRDK 175 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++G +D E V+ HI LR+KL L D +++ R +GY + Sbjct: 176 ILETVWG-YDFGGETRTVDVHIRTLRQKL--GLSGDIIETIRGVGYRV 220 >gi|253998963|ref|YP_003051026.1| winged helix family two component transcriptional regulator [Methylovorus sp. SIP3-4] gi|253985642|gb|ACT50499.1| two component transcriptional regulator, winged helix family [Methylovorus sp. SIP3-4] Length = 227 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 17/147 (11%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IRA P++ ++ + + G DD V KP REI+ARV AI RR + S+N Sbjct: 65 RAIRAEKNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRRTQPSDN 124 Query: 125 ----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + ++ + R E G V L E +LE L+ + G+ V+K+ + ++ GL Sbjct: 125 AQPVQITVGALTLWPEQRRAEWSGNVLELTSTEFNLLEVLVRHAGRVVSKSDL--SLQGL 182 Query: 181 ------FDEAVEENVVESHISKLRKKL 201 FD + ++ H+S +R+K+ Sbjct: 183 GRPLARFDRS-----IDVHLSSIRQKI 204 >gi|269838215|ref|YP_003320443.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269787478|gb|ACZ39621.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 236 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 13/152 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R S P++ ++ + + G DD + KP RE+LARV A+ RR Sbjct: 61 LEVLRRLRQESPTPVLMLTARSEEVDRVVGLELGADDYLTKPFSMRELLARVRALLRRTD 120 Query: 121 V------SNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVA 169 + ++ +A T +R DP + G+ L E R+L LM + G+ Sbjct: 121 LVRQMLEADRKASTEAVRYGPLALDPVRHIATLDGQELDLTPTEFRLLHLLMRHPGRAFG 180 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ + I+G D+ V E V++ + +LRKKL Sbjct: 181 RSYLLDTIWG--DQFVGERSVDNAVLRLRKKL 210 >gi|229188543|ref|ZP_04315583.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876] gi|228594937|gb|EEK52716.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876] Length = 237 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 15/162 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R + +P++ ++ + G DD + KP E++ARV A+ RR Sbjct: 63 IEVCKKLRDKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFL 122 Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V SNN + F + E L +E +L++ +N G+ KTQ Sbjct: 123 VLGSNNTVQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213 +F ++ D +E +N V HI KLRKK+ DP + K Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218 >gi|226315467|ref|YP_002775363.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098417|dbj|BAH46859.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 237 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 13/192 (6%) Query: 27 EGFNSL----EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82 EGF + +E L+ A+ +V I ++ + +L IR S +I ++ Sbjct: 26 EGFRHIYTAGTAQEALRLLAKNEVDIIILDVMLPDQSGFDLCPQIREISSAYIIYLTARA 85 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNNRAETGPIRVF 134 S L F G DD V KP + EI+AR A RR + + R + G + Sbjct: 86 SDLDVLSGFAIGGDDYVTKPFNPLEIVARTKAGLRRGVLMPVQHAEETRRRYDFGGFVLD 145 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 + V GE P P + ++L YL N +K Q++ A++G+ D ++N V HI Sbjct: 146 EYEGELLVGGEAVPCPAQAYQLLLYLCKNPNMVFSKAQLYEAVWGI-DGMGDDNTVMVHI 204 Query: 195 SKLRKKLRNKLG 206 K+R+++ + LG Sbjct: 205 HKIRERIESDLG 216 >gi|255283380|ref|ZP_05347935.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM 14469] gi|255266028|gb|EET59233.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM 14469] Length = 249 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 4/193 (2%) Query: 29 FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88 F+ E ++L+ + + V + G +VL R + H VP++ ++ S++ + Sbjct: 50 FDGQEALDYLECTEYDAVILDIMMPVMDGLQVLRKLRQRKEH--VPVLLLTAMDSIEDRV 107 Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVF 147 D+G DD + KP E+LAR+ + R+ V N G + V D + G+ Sbjct: 108 TGLDAGADDYLVKPFAFEELLARLRVMLRKPAAVKTNICTVGDLEVHMDTQQVLRGGKEI 167 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L +E IL Y++ N G +++ ++ I+ +D NV++ +I LRKK+ + Sbjct: 168 KLSGKEFSILRYMVQNAGIVLSREKLEQHIWN-YDYTGSSNVIDVYIRYLRKKIDDGYEK 226 Query: 208 DPVDSKRFLGYSI 220 + + R GY + Sbjct: 227 KLIHTVRGAGYVL 239 >gi|56460761|ref|YP_156042.1| response regulator [Idiomarina loihiensis L2TR] gi|56179771|gb|AAV82493.1| Response regulator (CheY, wHTH domains) [Idiomarina loihiensis L2TR] Length = 237 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 9/153 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R SQVP++ ++ + + G +D + KP RE++AR+ + R L + Sbjct: 73 RQLREWSQVPVLVLTARDDELQKVKLLEGGANDYLTKPFGIRELMARIHVLLRDLSIEQP 132 Query: 125 RAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 AE G + + + +Q E+ L R+E +L++L+++ K V + Q+ I+G Sbjct: 133 TAEAQLRFGELLIDREQHKVFLQNEIVNLSRKEYALLDFLVSHPQKLVTQQQLLEKIWGQ 192 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 + + + + +S++RKKL++ DP K Sbjct: 193 THQE-DTHYLRIFVSQVRKKLKD----DPAQPK 220 >gi|42784015|ref|NP_981262.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42739945|gb|AAS43870.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 8/152 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 64 VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123 Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I V R V L E IL Y M N+G + + Q+ S Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVMVDKTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 I+G ++ A ++ V SHI LR KL K + Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|26988171|ref|NP_743596.1| DNA-binding response regulator CzrR [Pseudomonas putida KT2440] gi|148549489|ref|YP_001269591.1| two component heavy metal response transcriptional regulator [Pseudomonas putida F1] gi|24982905|gb|AAN67060.1|AE016334_9 DNA-binding response regulator CzrR [Pseudomonas putida KT2440] gi|148513547|gb|ABQ80407.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 224 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +RA S ++ ++ + L + D G DD + KP E+LAR+ ++ RR ++ + Sbjct: 66 LRAESATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRR---NDQQL 122 Query: 127 ETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 + +RV DP G+ L +E +L LM G+ +++TQI S ++ + Sbjct: 123 QPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVWDMN 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + NVVE I +LR K+ + + + R +GY ++ Sbjct: 183 FD--CDTNVVEVSIRRLRAKIDDPFDNKLIHTLRGVGYVLE 221 >gi|325265300|ref|ZP_08132025.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5] gi|324029479|gb|EGB90769.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5] Length = 219 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 5/154 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125 IR+ P++ ++ + + SG DD + KP E+ ARV A RR + + Sbjct: 66 IRSQVDCPILFLTARTDENSIMYGLASGGDDYITKPFGIGELRARVQAHLRRENREKRHT 125 Query: 126 AETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 A +R G+ EV GE+ PL + E I E+L N G+ +K QI+ I+G +D+ Sbjct: 126 ALIEDVRFDLAGKTVEV-GEIRVPLTKSEYEISEFLAMNHGQVFSKEQIYERIFG-YDKD 183 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + + H+ +R K ++ G +P+++ +GY Sbjct: 184 GDVSAITEHVKNIRAKF-SRAGKEPIETVWGIGY 216 >gi|229089713|ref|ZP_04220974.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228693612|gb|EEL47314.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 225 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 75/165 (45%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQHAQIQYHGILWDEARHFVSVDNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D+ K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220 >gi|226358137|ref|YP_002787876.1| response regulator, OmpR; phosphate regulon transcriptional regulatory protein phoB [Deinococcus deserti VCD115] gi|226319780|gb|ACO47774.1| putative response regulator, OmpR; putative phosphate regulon transcriptional regulatory protein phoB [Deinococcus deserti VCD115] Length = 223 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 17/201 (8%) Query: 27 EGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYP 82 EG LE ++ ++ A R DV+ ++ L G VL R RA +P++ ++ Sbjct: 24 EGHEVLEAQDGQEARALLPRADVAVMDWMLPGAAGPVLA--REARAAGLDLPILMLTARG 81 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV 142 + L + GVDD V KP REI+ARV A+ RR+ V + + + + R V Sbjct: 82 EEEDKLHGLEEGVDDYVVKPFSPREIVARVRALLRRVGVHQD-VRSDSLTMDLKRRTVMV 140 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 G L R E +L L + G + ++ ++G D E VV+ HI+ LRK Sbjct: 141 DGLPVELSRLEFDLLAALALHPGLAWTRERLLERLWG-PDFPGTERVVDVHITALRK--- 196 Query: 203 NKLGFDP-----VDSKRFLGY 218 KLG DP +++ R +GY Sbjct: 197 -KLGDDPERPRYIETVRGVGY 216 >gi|161616164|ref|YP_001590130.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365528|gb|ABX69296.1| hypothetical protein SPAB_03966 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|267995367|gb|ACY90252.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] Length = 270 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +L++D L+ DG A G S++ F + SA D ++ L G G + Sbjct: 54 ILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDI 113 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 114 LREWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ G + + + GE L +E +LE L+ N+G+ + + I +Y Sbjct: 172 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 231 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D+ V N VE H+ LR+ KLG + + + +GY++ Sbjct: 232 -WDDDVSSNAVEVHVHHLRR----KLGSEFIRTVHGIGYTL 267 >gi|157693349|ref|YP_001487811.1| response regulator [Bacillus pumilus SAFR-032] gi|157682107|gb|ABV63251.1| response regulator [Bacillus pumilus SAFR-032] Length = 258 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 17/147 (11%) Query: 65 RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R+IR HS VP+I +S D+P+ + G DD V KP H ++A+V+A+ RR V Sbjct: 94 RMIRHHSNVPIIFLSSRDHPA--DMVMSMQLGADDFVQKPFHFDVLIAKVSAVLRR--VH 149 Query: 123 NNRAETGPIRVFSDGR-DPEV------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + AE ++V+ D E GEV L + E IL+ L+ ++ V++ + Sbjct: 150 DYNAEPASLKVWCGATIDLEKNTVTNDHGEV-ELTKNELFILKELIQHKNHIVSRESLIQ 208 Query: 176 AIYGLFDEA-VEENVVESHISKLRKKL 201 A++ DE V +N + ++++LRKKL Sbjct: 209 ALWE--DERFVSDNTLTVNVNRLRKKL 233 >gi|160934780|ref|ZP_02082166.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753] gi|156866233|gb|EDO59605.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 16/196 (8%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY + +DG +E ++ + +ED I ++ ++ R IR Sbjct: 23 LEKEGYQVVIANDG-----------KEAVELNEKEDPELILLDIMLPQLDGWQVCREIRK 71 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--- 126 SQVP+I ++ + + + G DD + KP +E++AR+ A+ RR + A Sbjct: 72 KSQVPIIMLTAKGEVFDKVLGLELGADDYIVKPFETKEVVARIKAVLRRTGQNQGEAVKE 131 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + + + + +V G P +E ++ +L +N + + Q+ ++G FD Sbjct: 132 VKYDKLSINLTNYELKVNGVQVDTPPKEMELIYHLASNPNRVFTRDQLLDEVWG-FDYYG 190 Query: 186 EENVVESHISKLRKKL 201 + V+ H+ +LR+KL Sbjct: 191 DSRTVDVHVKRLREKL 206 >gi|149374413|ref|ZP_01892187.1| DNA-binding heavy metal response regulator, putative [Marinobacter algicola DG893] gi|149361116|gb|EDM49566.1| DNA-binding heavy metal response regulator, putative [Marinobacter algicola DG893] Length = 221 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 28/229 (12%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL---IGKGE 58 +L++D L+ DG G S++ ++ E + + +E+ AI L G G Sbjct: 3 LLLVEDDRLLADGLSRQLEKAGFSVDTTHT--AREAMMLARQEEYRAIILDLGLPDGNGL 60 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 VL R + H P++ ++ ++ +G DD + KP E++AR+ AI RR Sbjct: 61 DVLRKWR--KDHIAFPVLILTARGDWHDKVEGLKAGADDYLAKPFQTEELIARLNAIVRR 118 Query: 119 LK------VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + V R E R DG + + G F R+L LM+ G+ + Sbjct: 119 SEGRIHSLVKAGRYELDENRQSLKSDDGTEHSLTGTEF-------RLLRCLMSRPGQVFS 171 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 K Q+ +Y L D ENV+E++I +LRK +G D + ++R GY Sbjct: 172 KEQLMEQLYNLNDTP-SENVIEAYIRRLRK----LVGNDTISTRRGQGY 215 >gi|83310469|ref|YP_420733.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945310|dbj|BAE50174.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 240 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 6/166 (3%) Query: 61 LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R IR A ++P+I ++ + ++G DD + KP E++ARV A+ R Sbjct: 71 IEICRQIRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYLTKPFSLPELMARVRALLR 130 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + + + + V D V G+ L E R+L++ + + G ++ ++ Sbjct: 131 RAQPVSQKGQISWGDVSMDLASHRVVRAGKAIHLGPTEFRLLQFFLQHPGTVFSREELLD 190 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++G D VE V+ HI +LRK L D + + R GY++D Sbjct: 191 AVWG-PDIYVEPRTVDVHIRRLRKALNCDTEADIIRTVRAAGYALD 235 >gi|16130019|ref|NP_416583.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli str. K-12 substr. MG1655] gi|26248453|ref|NP_754493.1| DNA-binding transcriptional regulator BaeR [Escherichia coli CFT073] gi|74312603|ref|YP_311022.1| DNA-binding transcriptional regulator BaeR [Shigella sonnei Ss046] gi|82543453|ref|YP_407400.1| DNA-binding transcriptional regulator BaeR [Shigella boydii Sb227] gi|82777414|ref|YP_403763.1| DNA-binding transcriptional regulator BaeR [Shigella dysenteriae Sd197] gi|89108899|ref|AP_002679.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli str. K-12 substr. W3110] gi|91211367|ref|YP_541353.1| DNA-binding transcriptional regulator BaeR [Escherichia coli UTI89] gi|110642289|ref|YP_670019.1| DNA-binding transcriptional regulator BaeR [Escherichia coli 536] gi|117624275|ref|YP_853188.1| DNA-binding transcriptional regulator BaeR [Escherichia coli APEC O1] gi|157161570|ref|YP_001458888.1| DNA-binding transcriptional regulator BaeR [Escherichia coli HS] gi|170081709|ref|YP_001731029.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli str. K-12 substr. DH10B] gi|170680336|ref|YP_001743060.1| DNA-binding transcriptional regulator BaeR [Escherichia coli SMS-3-5] gi|188492527|ref|ZP_02999797.1| DNA-binding response regulator BaeR [Escherichia coli 53638] gi|191169545|ref|ZP_03031273.1| DNA-binding response regulator BaeR [Escherichia coli B7A] gi|191169921|ref|ZP_03031475.1| DNA-binding response regulator BaeR [Escherichia coli F11] gi|193062926|ref|ZP_03044019.1| DNA-binding response regulator BaeR [Escherichia coli E22] gi|194428867|ref|ZP_03061401.1| DNA-binding response regulator BaeR [Escherichia coli B171] gi|215487302|ref|YP_002329733.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O127:H6 str. E2348/69] gi|218549496|ref|YP_002383287.1| DNA-binding transcriptional regulator BaeR [Escherichia fergusonii ATCC 35469] gi|218558959|ref|YP_002391872.1| DNA-binding transcriptional regulator BaeR [Escherichia coli S88] gi|218690137|ref|YP_002398349.1| DNA-binding transcriptional regulator BaeR [Escherichia coli ED1a] gi|218705614|ref|YP_002413133.1| DNA-binding transcriptional regulator BaeR [Escherichia coli UMN026] gi|227887135|ref|ZP_04004940.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli 83972] gi|237704536|ref|ZP_04535017.1| transcriptional response regulatory protein [Escherichia sp. 3_2_53FAA] gi|238901269|ref|YP_002927065.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli BW2952] gi|253772987|ref|YP_003035818.1| DNA-binding transcriptional regulator BaeR [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162070|ref|YP_003045178.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B str. REL606] gi|256022229|ref|ZP_05436094.1| DNA-binding transcriptional regulator BaeR [Escherichia sp. 4_1_40B] gi|260844689|ref|YP_003222467.1| DNA-binding response regulator BaeR in two-component regulatory system with BaeS [Escherichia coli O103:H2 str. 12009] gi|291283320|ref|YP_003500138.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli O55:H7 str. CB9615] gi|293405554|ref|ZP_06649546.1| DNA-binding transcriptional regulator BaeR [Escherichia coli FVEC1412] gi|293410442|ref|ZP_06654018.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B354] gi|293415367|ref|ZP_06658010.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B185] gi|293446434|ref|ZP_06662856.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B088] gi|297520052|ref|ZP_06938438.1| DNA-binding transcriptional regulator BaeR [Escherichia coli OP50] gi|298381238|ref|ZP_06990837.1| DNA-binding transcriptional regulator BaeR [Escherichia coli FVEC1302] gi|300897072|ref|ZP_07115538.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300930968|ref|ZP_07146328.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300955102|ref|ZP_07167506.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300978917|ref|ZP_07174430.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|300981663|ref|ZP_07175649.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|301021219|ref|ZP_07185252.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|301026387|ref|ZP_07189832.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|306814798|ref|ZP_07448960.1| DNA-binding transcriptional regulator BaeR [Escherichia coli NC101] gi|307138737|ref|ZP_07498093.1| DNA-binding transcriptional regulator BaeR [Escherichia coli H736] gi|309787850|ref|ZP_07682460.1| transcriptional regulatory protein baeR [Shigella dysenteriae 1617] gi|312967314|ref|ZP_07781530.1| transcriptional regulatory protein baeR [Escherichia coli 2362-75] gi|312973671|ref|ZP_07787843.1| transcriptional regulatory protein baeR [Escherichia coli 1827-70] gi|331642699|ref|ZP_08343834.1| transcriptional regulatory protein BaeR [Escherichia coli H736] gi|331647732|ref|ZP_08348824.1| transcriptional regulatory protein BaeR [Escherichia coli M605] gi|331658159|ref|ZP_08359121.1| transcriptional regulatory protein BaeR [Escherichia coli TA206] gi|331663575|ref|ZP_08364485.1| transcriptional regulatory protein BaeR [Escherichia coli TA143] gi|59799175|sp|P69228|BAER_ECOLI RecName: Full=Transcriptional regulatory protein BaeR gi|59799176|sp|P69229|BAER_ECOL6 RecName: Full=Transcriptional regulatory protein BaeR gi|26108858|gb|AAN81061.1|AE016763_20 Transcriptional Regulatory protein baeR [Escherichia coli CFT073] gi|216533|dbj|BAA03141.1| BaeR [Escherichia coli] gi|1736788|dbj|BAA15935.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli str. K12 substr. W3110] gi|1788394|gb|AAC75140.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli str. K-12 substr. MG1655] gi|73856080|gb|AAZ88787.1| transcriptional response regulatory protein [Shigella sonnei Ss046] gi|81241562|gb|ABB62272.1| transcriptional response regulatory protein [Shigella dysenteriae Sd197] gi|81244864|gb|ABB65572.1| transcriptional response regulatory protein [Shigella boydii Sb227] gi|91072941|gb|ABE07822.1| transcriptional response regulatory protein BaeR [Escherichia coli UTI89] gi|110343881|gb|ABG70118.1| transcriptional regulatory protein BaeR [Escherichia coli 536] gi|115513399|gb|ABJ01474.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli APEC O1] gi|157067250|gb|ABV06505.1| DNA-binding response regulator BaeR [Escherichia coli HS] gi|169889544|gb|ACB03251.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli str. K-12 substr. DH10B] gi|170518054|gb|ACB16232.1| DNA-binding response regulator BaeR [Escherichia coli SMS-3-5] gi|188487726|gb|EDU62829.1| DNA-binding response regulator BaeR [Escherichia coli 53638] gi|190900420|gb|EDV60241.1| DNA-binding response regulator BaeR [Escherichia coli B7A] gi|190909437|gb|EDV69022.1| DNA-binding response regulator BaeR [Escherichia coli F11] gi|192931569|gb|EDV84170.1| DNA-binding response regulator BaeR [Escherichia coli E22] gi|194413035|gb|EDX29323.1| DNA-binding response regulator BaeR [Escherichia coli B171] gi|215265374|emb|CAS09770.1| DNA-binding response regulator BaeR in two-component regulatory system with BaeS [Escherichia coli O127:H6 str. E2348/69] gi|218357037|emb|CAQ89669.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia fergusonii ATCC 35469] gi|218365728|emb|CAR03464.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli S88] gi|218427701|emb|CAR08608.2| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli ED1a] gi|218432711|emb|CAR13605.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli UMN026] gi|222033844|emb|CAP76585.1| Transcriptional regulatory protein baeR [Escherichia coli LF82] gi|226237431|dbj|BAH46953.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli O55:H7] gi|226900902|gb|EEH87161.1| transcriptional response regulatory protein [Escherichia sp. 3_2_53FAA] gi|227835485|gb|EEJ45951.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli 83972] gi|238860855|gb|ACR62853.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli BW2952] gi|242377732|emb|CAQ32493.1| BaeR transcriptional regulator [Escherichia coli BL21(DE3)] gi|253324031|gb|ACT28633.1| two component transcriptional regulator, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973971|gb|ACT39642.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli B str. REL606] gi|253978165|gb|ACT43835.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli BL21(DE3)] gi|257759836|dbj|BAI31333.1| DNA-binding response regulator BaeR in two-component regulatory system with BaeS [Escherichia coli O103:H2 str. 12009] gi|260448820|gb|ACX39242.1| two component transcriptional regulator, winged helix family [Escherichia coli DH1] gi|281179177|dbj|BAI55507.1| two-component response regulator [Escherichia coli SE15] gi|284922073|emb|CBG35152.1| two-component response regulator [Escherichia coli 042] gi|290763193|gb|ADD57154.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli O55:H7 str. CB9615] gi|291323264|gb|EFE62692.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B088] gi|291427762|gb|EFF00789.1| DNA-binding transcriptional regulator BaeR [Escherichia coli FVEC1412] gi|291433015|gb|EFF05994.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B185] gi|291470910|gb|EFF13394.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B354] gi|294494062|gb|ADE92818.1| DNA-binding response regulator BaeR [Escherichia coli IHE3034] gi|298278680|gb|EFI20194.1| DNA-binding transcriptional regulator BaeR [Escherichia coli FVEC1302] gi|299879705|gb|EFI87916.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|300307464|gb|EFJ61984.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300317945|gb|EFJ67729.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300359122|gb|EFJ74992.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300398228|gb|EFJ81766.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300409550|gb|EFJ93088.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|300461194|gb|EFK24687.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|305852192|gb|EFM52644.1| DNA-binding transcriptional regulator BaeR [Escherichia coli NC101] gi|307554152|gb|ADN46927.1| transcriptional regulatory protein BaeR [Escherichia coli ABU 83972] gi|307626375|gb|ADN70679.1| DNA-binding transcriptional regulator BaeR [Escherichia coli UM146] gi|308924249|gb|EFP69746.1| transcriptional regulatory protein baeR [Shigella dysenteriae 1617] gi|309702403|emb|CBJ01725.1| two-component response regulator [Escherichia coli ETEC H10407] gi|310332266|gb|EFP99501.1| transcriptional regulatory protein baeR [Escherichia coli 1827-70] gi|312288122|gb|EFR16026.1| transcriptional regulatory protein baeR [Escherichia coli 2362-75] gi|312946701|gb|ADR27528.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O83:H1 str. NRG 857C] gi|315136713|dbj|BAJ43872.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli DH1] gi|315285690|gb|EFU45130.1| response regulator receiver domain protein [Escherichia coli MS 110-3] gi|315294400|gb|EFU53748.1| response regulator receiver domain protein [Escherichia coli MS 153-1] gi|315299488|gb|EFU58739.1| response regulator receiver domain protein [Escherichia coli MS 16-3] gi|320172686|gb|EFW47921.1| Response regulator BaeR [Shigella dysenteriae CDC 74-1112] gi|320183719|gb|EFW58557.1| Response regulator BaeR [Shigella flexneri CDC 796-83] gi|320195942|gb|EFW70566.1| Response regulator BaeR [Escherichia coli WV_060327] gi|320657502|gb|EFX25300.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663318|gb|EFX30623.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O55:H7 str. USDA 5905] gi|323161803|gb|EFZ47682.1| transcriptional regulatory protein baeR [Escherichia coli E128010] gi|323168797|gb|EFZ54477.1| transcriptional regulatory protein baeR [Shigella sonnei 53G] gi|323936884|gb|EGB33168.1| response regulator receiver domain-containing protein [Escherichia coli E1520] gi|323940850|gb|EGB37038.1| response regulator receiver domain-containing protein [Escherichia coli E482] gi|323948460|gb|EGB44441.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|323951833|gb|EGB47707.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323956115|gb|EGB51867.1| response regulator receiver domain-containing protein [Escherichia coli H263] gi|323961720|gb|EGB57323.1| response regulator receiver domain-containing protein [Escherichia coli H489] gi|324006443|gb|EGB75662.1| response regulator receiver domain protein [Escherichia coli MS 57-2] gi|324013872|gb|EGB83091.1| response regulator receiver domain protein [Escherichia coli MS 60-1] gi|330911916|gb|EGH40426.1| response regulator BaeR [Escherichia coli AA86] gi|331039497|gb|EGI11717.1| transcriptional regulatory protein BaeR [Escherichia coli H736] gi|331043456|gb|EGI15594.1| transcriptional regulatory protein BaeR [Escherichia coli M605] gi|331056407|gb|EGI28416.1| transcriptional regulatory protein BaeR [Escherichia coli TA206] gi|331059374|gb|EGI31351.1| transcriptional regulatory protein BaeR [Escherichia coli TA143] gi|332097147|gb|EGJ02130.1| transcriptional regulatory protein baeR [Shigella boydii 3594-74] gi|332343861|gb|AEE57195.1| transcriptional regulatory protein BaeR [Escherichia coli UMNK88] Length = 240 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167 I RR K + AE+ P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|325479624|gb|EGC82716.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus prevotii ACS-065-V-Col13] Length = 219 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S +P+I ++ + D G DD + KP E+++RV A+ RR K Sbjct: 59 LSILKEIREFSNLPVIMLTARTDEFDKVTGLDLGADDYITKPFSILELISRVKAVLRRSK 118 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + T I + + R +V + L +E +L LM+N G +++ I+G Sbjct: 119 KKDKDDLTYKEISLNTSKRRVKVLDDKIDLTYKEFEMLLLLMSNVGNVISREDFLLKIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E V+ HI+ LR KL+ + + + R LGY + Sbjct: 179 -YDYEGETRTVDVHIASLRSKLKETGKY--IHTVRNLGYKL 216 >gi|313201066|ref|YP_004039724.1| winged helix family two component transcriptional regulator [Methylovorus sp. MP688] gi|312440382|gb|ADQ84488.1| two component transcriptional regulator, winged helix family [Methylovorus sp. MP688] Length = 234 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 74/147 (50%), Gaps = 17/147 (11%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IRA P++ ++ + + G DD V KP REI+ARV AI RR + S+N Sbjct: 72 RAIRAEKNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRRTQPSDN 131 Query: 125 ----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + ++ + R E G V L E +LE L+ + G+ V+K+ + ++ GL Sbjct: 132 AQPVQITVGALTLWPEQRRAEWSGNVLELTSTEFNLLEVLVRHAGRVVSKSDL--SLQGL 189 Query: 181 ------FDEAVEENVVESHISKLRKKL 201 FD + ++ H+S +R+K+ Sbjct: 190 GRPLARFDRS-----IDVHLSSIRQKI 211 >gi|254444774|ref|ZP_05058250.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198259082|gb|EDY83390.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 226 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 2/159 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ A + P+I I+ ++ D+G DD V KP E++AR+ A++RR L Sbjct: 63 LKRMRAASIRTPVIIITARDMHNEKIEGLDAGADDYVVKPFFVDELVARLNAVWRRSLGQ 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + V R+ G +P +E +L +LM G+ + QIF ++ F Sbjct: 123 GLDVLSVDDLTVNLMTREVTRGGVKIDMPTKEFNLLVFLMKAPGRVFNRVQIFENVWN-F 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D E N+V+ +I +LR+K+ +++ R +GY I Sbjct: 182 DFDPETNLVDVYIGRLRRKIDQGDSKKLLETVRGVGYRI 220 >gi|220918203|ref|YP_002493507.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] gi|219956057|gb|ACL66441.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] Length = 234 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 30/194 (15%) Query: 41 SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100 R DV ++ L GK LE+ R +R+ S VP+I ++ + + G DD + Sbjct: 48 GGRFDVVLLDLMLPGK--DGLEVCRELRSRSDVPVIVLTARGEEADRVMGLELGADDYLA 105 Query: 101 KPIHHREILARVAAIYRR-----------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 KP RE+LAR+ A+ RR ++V + RV DGR+ + G F L Sbjct: 106 KPFSPRELLARIRAVVRRATGRAGPPREVVRVGGLVVDPAARRVTLDGREVALTGYEFAL 165 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 L L G+ +A+ Q+ G +EA + + V+ H+S+LR+ KLG DP Sbjct: 166 -------LHALARRAGRVLAREQLMELAGGSAEEAFDRS-VDVHVSRLRQ----KLGDDP 213 Query: 210 -----VDSKRFLGY 218 + + R GY Sbjct: 214 RRPRLIKTVRGAGY 227 >gi|110835404|ref|YP_694263.1| DNA-binding heavy metal response regulator [Alcanivorax borkumensis SK2] gi|110648515|emb|CAL17991.1| DNA-binding heavy metal response regulator, putative [Alcanivorax borkumensis SK2] Length = 239 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 5/116 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146 G DD + KP E+LAR++A+ RR VS ET GP V R + E Sbjct: 101 LSQGADDYMVKPTKQAELLARISALGRRAGVSEMDEETTLNVGPWTVDRSRRQILLDEEA 160 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 L ++ + YL N GK +++ + ++G+ +E V+ HIS++R+ L+ Sbjct: 161 IKLTDKDYELACYLFQNVGKLMSRAHLLEKVWGIM-TPIESRTVDVHISRIRRSLQ 215 >gi|325845344|ref|ZP_08168644.1| putative response regulator SaeR [Turicibacter sp. HGF1] gi|325488598|gb|EGC91007.1| putative response regulator SaeR [Turicibacter sp. HGF1] Length = 224 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 17/163 (10%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + I H Q+P++ IS L F G DD + KP +E+ RV A RLK Sbjct: 65 QLIKEIHQHRQIPVLFISAKTEEFDRLLGFALGADDYITKPFSAKEVAFRVKA---RLKT 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G I + +DG + E L +E ++L YL+ + K V+K QI ++G Sbjct: 122 TTKTIQFGNITI-TDGIVSK-NNEPLDLTAKEYKLLMYLVRHANKIVSKEQICHEVWG-- 177 Query: 182 DEAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGY 218 ++ E +N + HI +LRKK+ DP K LGY Sbjct: 178 EDYFEFDNTISVHIRRLRKKIE----VDPSKPKHITTIIGLGY 216 >gi|323704302|ref|ZP_08115881.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323536368|gb|EGB26140.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 15/159 (9%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNRAET 128 +VP+I ++ + + + G DD V KP RE++ARV A+ RR+ K + N Sbjct: 72 KVPIIMLTAKNDIVDKVIGLEFGADDYVTKPFDTRELIARVKALLRRIEEVKANKNFCTF 131 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + V D + +G++ L +E +L+ L+ +G + + ++ ++G +D + Sbjct: 132 GDLIVNFDQGIVKKRGKIINLTPKEFVLLKVLIDAKGNVLTREELLDKVWG-YDYYGDTR 190 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFL------GYSID 221 VV+ HI +LRKK+ D S R++ GY D Sbjct: 191 VVDIHILRLRKKIE-----DDTQSPRYIRTVYGFGYKFD 224 >gi|315647496|ref|ZP_07900600.1| transcriptional regulatory protein cutR (Defective melC1 suppressor protein) [Paenibacillus vortex V453] gi|315277120|gb|EFU40458.1| transcriptional regulatory protein cutR (Defective melC1 suppressor protein) [Paenibacillus vortex V453] Length = 231 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 75/143 (52%), Gaps = 6/143 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ ++++ ++ +S ++ + D G +D + KP E+ AR+ ++ RR + Sbjct: 63 LRRVRSNNNEIKILILSARTEIEDIIKGLDDGANDYLVKPFDFNELEARIRSLLRRSFIQ 122 Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ T G ++V + + + F L ++E ILEYLM N+ K ++ Q+ ++ Sbjct: 123 NDVVLTLGDMKVNTAQKFAAIYDIKFDLTKKEYSILEYLMFNKNKVISPEQLIEHVW--- 179 Query: 182 DEAVE--ENVVESHISKLRKKLR 202 D V+ N ++ HI L+KK+R Sbjct: 180 DSEVDSFSNSLKYHIYSLKKKIR 202 >gi|300813449|ref|ZP_07093793.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512398|gb|EFK39554.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 233 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 94/207 (45%), Gaps = 25/207 (12%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKV---LELPRI--------IRAHSQVPLIGISD 80 LE E + A + + AIE F + + L +PR+ +R S VP+I +S Sbjct: 23 LENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRLSGEEAIKKLRDISFVPIIILSA 82 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-----ETGPIRVFS 135 + + G DD + KP + E++ARV + RR +N A + G +++ + Sbjct: 83 KSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRRYHSYDNLASSEIIQIGNVKLNT 142 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 + V ++ L E +ILE+LM N K + I+ ++ + A+E V HI Sbjct: 143 LEKTCSVDDKIINLTSLEYKILEFLMKNPNKVFSIESIYEHVWN--EPAIEAKTVTVHIR 200 Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++R+K+ VD KR + + W Sbjct: 201 RIREKIE-------VDPKRPMYIQVAW 220 >gi|254000070|ref|YP_003052133.1| winged helix family two component transcriptional regulator [Methylovorus sp. SIP3-4] gi|253986749|gb|ACT51606.1| two component transcriptional regulator, winged helix family [Methylovorus sp. SIP3-4] Length = 221 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 18/186 (9%) Query: 45 DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D+ ++ L GK G +L R +R + +P+I I+ +++ + D G DD + KP Sbjct: 46 DLLLLDIGLPGKDGISILTTLRAMR--NPLPVIVITARDAIEDRIRGLDLGADDYIVKPF 103 Query: 104 HHREILARVAAIYRRLK------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRIL 157 E++ARV A+ RR +SN P+ +P++ L +RE +L Sbjct: 104 ELSELMARVRAVMRRKTGEGMPLLSNGSLTLNPM-THEVLIEPDI---CHALSKREYALL 159 Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217 E L+ G ++++++ + +YG + E VE N +E + LRKKL N + + R +G Sbjct: 160 EALLIRPGAILSRSELETKVYG-WGEEVESNAIEFLLHSLRKKLGNT----TIKNIRGVG 214 Query: 218 YSIDWN 223 + I N Sbjct: 215 WMISKN 220 >gi|238787668|ref|ZP_04631466.1| Transcriptional regulatory protein tctD [Yersinia frederiksenii ATCC 33641] gi|238724455|gb|EEQ16097.1| Transcriptional regulatory protein tctD [Yersinia frederiksenii ATCC 33641] Length = 221 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 3/160 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + +P++ ++ + + + G DD + KP E+ AR+ A+ RR Sbjct: 60 LARLRKRGQTLPVLLLTARTEVADRVKGLNLGADDYLTKPFEMDELEARIRALLRRSVGG 119 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N + + D + + L RE +L LM RG+ VAK Q+F ++ L D Sbjct: 120 NGQVVQFGDLTYHDEGYFLLADKPLALTPRESAVLTSLMHRRGRPVAKQQLFEQVFTLSD 179 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +A E+ +E ++ ++RKKL + + R LGYS++ Sbjct: 180 DANPES-IELYVHRVRKKLHG--ANVSIQTLRGLGYSLEC 216 >gi|227112647|ref|ZP_03826303.1| DNA-binding transcriptional regulator BaeR [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 242 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 8/155 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S VP+I ++ L + G DD + KP RE++ RV Sbjct: 62 LMLPGCDGLTLCRTIRQFSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRV 121 Query: 113 AAIYRRLKVSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 + RR N+ + ET + + G G+ L E R+L+ L A GK Sbjct: 122 RTLLRRCGWQNDGLKAVEKTETA-LLIDKSGFQASYLGQNLDLTPAEFRLLKTLSAEPGK 180 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ + +Y + V + ++SHI LR+KL Sbjct: 181 VFSREALLDKLYDDY-RVVTDRTIDSHIKNLRRKL 214 >gi|226940731|ref|YP_002795805.1| two component transcriptional regulator, winged helix family [Laribacter hongkongensis HLHK9] gi|226715658|gb|ACO74796.1| two component transcriptional regulator, winged helix family [Laribacter hongkongensis HLHK9] Length = 223 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/212 (28%), Positives = 94/212 (44%), Gaps = 15/212 (7%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L GY + +DG E N L Q S + V GE VLE R+ Sbjct: 24 LTDAGYHCRWINDGA--EAMNKLN-----QPSLPDMVLLDLGLPGLDGEIVLE--RLREQ 74 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128 VP++ ++ +L+ + + G DD V KP E+LARV A+ RR + R Sbjct: 75 GKDVPVLVLTARDALEQRIRGLNLGADDYVVKPFDVDELLARVRALLRRAQPAGERRLRW 134 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 + + D QGE L E R+L LM + ++K+++ +Y E N Sbjct: 135 RDVELAVDVTQAWRQGEPLDLTAVELRLLHALMTHPQIPLSKSRLLQLVYDDVPEH-SSN 193 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + H+S KLR+KLG D + ++R LG+ + Sbjct: 194 PLAVHLS----KLRHKLGKDSILNERGLGWRL 221 >gi|126453771|ref|YP_001065859.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|242315026|ref|ZP_04814042.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|254178047|ref|ZP_04884702.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|254199512|ref|ZP_04905878.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|254205827|ref|ZP_04912179.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|254358773|ref|ZP_04975046.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|126227413|gb|ABN90953.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|147749108|gb|EDK56182.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|147753270|gb|EDK60335.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|148027900|gb|EDK85921.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|160699086|gb|EDP89056.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|242138265|gb|EES24667.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b] Length = 230 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 3/134 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAE 127 + +P++ +++ ++ ++G DD + KP RE +ARV A+ RR +S E Sbjct: 71 APLPILVLTNAVLETDLVEALEAGADDYLIKPPREREFVARVNALRRRASISKQFEGTIE 130 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G R+ + R + GE PL +E I+E L + G+ V + I S ++G E Sbjct: 131 IGGYRIATVERAVYLAGERIPLSPKEYEIVELLARHVGQVVPRKTIISRVWGRAAEEEVS 190 Query: 188 NVVESHISKLRKKL 201 +++HI ++R+K+ Sbjct: 191 RSLDTHIYRIRRKM 204 >gi|77745281|gb|ABB02541.1| response regulator [Lactobacillus reuteri] Length = 239 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 13/159 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R HSQVP+I IS + +G DD + KP +LA++ A+ RR K + + Sbjct: 80 VRKHSQVPIIVISAAEIDTNVMHAVAAGADDYIMKPFAMTVLLAKIQALLRRNKQTTDAE 139 Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E P+ + Q L E +L+ L+++R K V+K Q+ ++ Sbjct: 140 EIMWDHNSFNPLTNILMNENGTAQ-----LTPTEGAMLQVLLSHRNKTVSKEQLLQWLWQ 194 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + EN + +IS+LR KL + ++R LGY Sbjct: 195 -GGKYLNENTLNVNISRLRTKLSTIGLRQCIHTERGLGY 232 >gi|30022879|ref|NP_834510.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|229130093|ref|ZP_04259054.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|29898438|gb|AAP11711.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228653308|gb|EEL09185.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 8/152 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 64 VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123 Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I V R V L E IL Y M N+G + + Q+ S Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 I+G ++ A ++ V SHI LR KL K + Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|326794734|ref|YP_004312554.1| transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326545498|gb|ADZ90718.1| two component transcriptional regulator, winged helix family [Marinomonas mediterranea MMB-1] Length = 225 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 2/142 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R S +P+I ++ L + G DD V KP RE++ARV A RR++ Sbjct: 61 IEVCKQVRQFSGIPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREVVARVKANLRRVE 120 Query: 121 VSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +T + +D +GE+ L E ++L+ L+ G+ + I +IY Sbjct: 121 LDHIESPKTDGFDLDADRLRATYKGELIDLTTVEFQLLQLLIKEPGRVFGRDLIMKSIYS 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 V + ++SHI KLRKK+ Sbjct: 181 -DSRVVSDRTIDSHIKKLRKKI 201 >gi|239982704|ref|ZP_04705228.1| two-component system regulator [Streptomyces albus J1074] gi|291454552|ref|ZP_06593942.1| two-component system response regulator [Streptomyces albus J1074] gi|291357501|gb|EFE84403.1| two-component system response regulator [Streptomyces albus J1074] Length = 232 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 13/163 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA + VP+I ++ +++ + + G DD V KP E+LAR+ A+ RR + + Sbjct: 69 IRARTSVPVIMVTARADVRSRIHGLNLGADDYVVKPYDTGELLARIHAVARRNQPGDAEG 128 Query: 127 ETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 P ++V R V GEV L R+E +L L+ G + QI S + Sbjct: 129 AATPAPGALVIGAVQVELPTRRVSVDGEVVALTRKEFDLLALLVQRPGVVFRREQIISEV 188 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E +E H++ LR KLR +++ R +GY + Sbjct: 189 WRTSWEGTGRT-LEVHVASLRSKLRRP---ALIETVRGVGYRL 227 >gi|238751695|ref|ZP_04613184.1| Transcriptional regulatory protein tctD [Yersinia rohdei ATCC 43380] gi|238710105|gb|EEQ02334.1| Transcriptional regulatory protein tctD [Yersinia rohdei ATCC 43380] Length = 224 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 13/166 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + +P++ ++ + + + G DD + KP E+ AR+ A+ RR Sbjct: 63 LARLRKRGQTLPVLLLTARTEVADRVKGLNLGADDYLTKPFELDELEARIRALLRR---- 118 Query: 123 NNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ETG F D + + + L RE +L LM RG+ VAK Q+F + Sbjct: 119 -SIGETGQAVEFGDLTYHDEGYFLLADKPLALTPRESAVLTSLMHRRGRPVAKQQLFEQV 177 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + L D+A E+ +E ++ ++RKKL+ + + R LGYS++ Sbjct: 178 FTLSDDANPES-IELYVHRVRKKLQGS--NVSIQTLRGLGYSLECT 220 >gi|225575608|ref|ZP_03784218.1| hypothetical protein RUMHYD_03700 [Blautia hydrogenotrophica DSM 10507] gi|225037161|gb|EEG47407.1| hypothetical protein RUMHYD_03700 [Blautia hydrogenotrophica DSM 10507] Length = 236 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 18/155 (11%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R+ S P+I IS + +D D+G DD + KP E+LAR+ + RR++ Sbjct: 65 IEVIKSVRSWSMCPIIVISARSEDKDKIDALDAGADDYLTKPFSVDELLARLRSTMRRIQ 124 Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + A E G +R+ V+GE L E +L L N GK + + I Sbjct: 125 YLEDNAGKETPVFENGQLRIDYSSASVTVKGEEIHLMPIEYSLLCLLAQNIGKVLTHSYI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLR---KKLRNKL 205 I+ +N +ES +S LR LR K+ Sbjct: 185 LDKIW--------KNSIESDLSSLRVYMTSLRKKI 211 >gi|254510565|ref|ZP_05122632.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11] gi|221534276|gb|EEE37264.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11] Length = 226 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 105/228 (46%), Gaps = 18/228 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +D FG++G +E + + E L + AI + G L Sbjct: 5 LLIVEDDQDTRDFIAKGFGEEGYVVE--VAADGREGLYHATDGGFDAIVLDRMLPGLDGL 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + +RA + P++ ++ ++ + +G DD + KP +E+ AR+ A+ RR Sbjct: 63 SLIKSMRAAGLKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRR-- 120 Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 AE P + D R G L RE +ILE+ + + + V++T + Sbjct: 121 --PQEAEETPTLICRDLEMDLLTRKVTRNGREITLTPREFQILEFFLRRKNRVVSRTMLL 178 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220 ++ FD NVV+ HISKLR++L G DPV ++ R GY + Sbjct: 179 EGVWDYHFDP--NTNVVDVHISKLRRQLDGD-GADPVIETVRGAGYMV 223 >gi|163790938|ref|ZP_02185361.1| DNA-binding response regulator [Carnobacterium sp. AT7] gi|159873780|gb|EDP67861.1| DNA-binding response regulator [Carnobacterium sp. AT7] Length = 235 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 12/211 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D I F E F + + EE L+ I L+ + L Sbjct: 4 ILVVDDEKPISD--IVKFNLTKEGYEVFTAYDGEEALEKVEEVLPDLIILDLMLPKKDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R + +P+I ++ S + + G DD V KP +RE+ ARV A RR Sbjct: 62 EVCREVRKNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELAARVKANLRRHDN 121 Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 +V N E G + V D +G L RE +L YL + G+ + + Sbjct: 122 AKTQVVEEVETNDIEVGALTVHPDAYIVSKRGATIELTHREFELLHYLAKHLGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ + +LR+K+ + Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIED 211 >gi|145637649|ref|ZP_01793304.1| transcriptional regulatory protein [Haemophilus influenzae PittHH] gi|145269172|gb|EDK09120.1| transcriptional regulatory protein [Haemophilus influenzae PittHH] Length = 221 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 2/133 (1%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNRAET 128 H VP++ ++ +L + SG DD + KP E+ AR+ A I RR ++ E Sbjct: 70 HQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYGYHHSVIEQ 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 +++ + R + + L RE ++LE LM N+ + ++++ I + +DE + Sbjct: 130 AGVKLDQNQRSVWLNNQPISLTSREYKLLELLMLNKDRVLSRSSIEEKLSS-WDEEISSG 188 Query: 189 VVESHISKLRKKL 201 ++ HI LR+KL Sbjct: 189 ALDVHIYNLRQKL 201 >gi|118470690|ref|YP_884659.1| two component response transcriptional regulatory protein prra [Mycobacterium smegmatis str. MC2 155] gi|118171977|gb|ABK72873.1| two component response transcriptional regulatory protein prra [Mycobacterium smegmatis str. MC2 155] Length = 246 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 77/151 (50%), Gaps = 4/151 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128 + +P+ +S ++ + ++G DD + KP E++AR+ A+ RR + ++T Sbjct: 91 NDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRASHTEQPSDTMT 150 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 GP+ + + R V GE L +RE +L L N G +++ ++ ++G +D V+ Sbjct: 151 VGPVTIDTARRLVFVSGERVDLTKREFDLLAVLAENAGVVLSRQRLLELVWG-YDFDVDT 209 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 NV + IS LR+KL + + R +GY Sbjct: 210 NVADVFISYLRRKLERDGVPRVIHTVRGIGY 240 >gi|86606063|ref|YP_474826.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554605|gb|ABC99563.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 243 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 74/145 (51%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR+ S++ Sbjct: 72 LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVARSSHEG 131 Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G +R+ ++ R + E L E +LE L++ G+ ++ +I ++G Sbjct: 132 IPSSGVIQVGDLRIDTNKRQVYKRDERIRLTGMEFSLLELLVSRSGEPFSRAEILQEVWG 191 Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203 E V+ VV+ HIS+LR KL + Sbjct: 192 YTPERHVDTRVVDVHISRLRAKLED 216 >gi|53719678|ref|YP_108664.1| putative two component system response regulator [Burkholderia pseudomallei K96243] gi|52210092|emb|CAH36066.1| putative two component system, response regulator [Burkholderia pseudomallei K96243] Length = 236 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 3/134 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAE 127 + +P++ +++ ++ ++G DD + KP RE +ARV A+ RR +S E Sbjct: 77 APLPILVLTNAVLETDLVEALEAGADDYLIKPPREREFVARVNALRRRASISKQFEGTIE 136 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G R+ + R + GE PL +E I+E L + G+ V + I S ++G E Sbjct: 137 IGGYRIATVERAVYLAGERIPLSPKEYEIVELLARHVGQVVPRKTIISRVWGRAAEEEVS 196 Query: 188 NVVESHISKLRKKL 201 +++HI ++R+K+ Sbjct: 197 RSLDTHIYRIRRKM 210 >gi|15595953|ref|NP_249447.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107100216|ref|ZP_01364134.1| hypothetical protein PaerPA_01001239 [Pseudomonas aeruginosa PACS2] gi|116048671|ref|YP_792529.1| two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218893301|ref|YP_002442170.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254239118|ref|ZP_04932441.1| hypothetical protein PACG_05301 [Pseudomonas aeruginosa C3719] gi|254245010|ref|ZP_04938332.1| hypothetical protein PA2G_05892 [Pseudomonas aeruginosa 2192] gi|296390895|ref|ZP_06880370.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313105577|ref|ZP_07791843.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|9946643|gb|AAG04145.1|AE004510_9 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115583892|gb|ABJ09907.1| probable two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126171049|gb|EAZ56560.1| hypothetical protein PACG_05301 [Pseudomonas aeruginosa C3719] gi|126198388|gb|EAZ62451.1| hypothetical protein PA2G_05892 [Pseudomonas aeruginosa 2192] gi|218773529|emb|CAW29341.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] gi|310878345|gb|EFQ36939.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 223 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + Sbjct: 63 LARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLG 122 Query: 123 NNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + V+ G R + + L RE+ +LE ++A G+ ++K Q+ + ++GL Sbjct: 123 GEQLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQVFGL- 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + +E ++ +LRKKL G + + R LGY ++ Sbjct: 182 DEEASADAIEIYVHRLRKKLEG--GAVRIVTFRGLGYLLE 219 >gi|331268875|ref|YP_004395367.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329125425|gb|AEB75370.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 223 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 82/161 (50%), Gaps = 7/161 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I ++ + L ++ G DD V KP + ++A+V A+ +R + N Sbjct: 66 IRELSKVPIIMLTAKSEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKRSIIDINEE 125 Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + + + + ++ G+V L +E +L + + N+ +++ ++ ++G FD Sbjct: 126 KNIINYNGLEINEPSNEVKIDGKVIVLSPKEYDLLLFFVKNKDIVLSRDKLLDRVWG-FD 184 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 V++HI +LR+KL+NK D + + R GY + N Sbjct: 185 YDGGLRTVDTHIKRLREKLKNKA--DYIVTVRGKGYKFEVN 223 >gi|260778851|ref|ZP_05887743.1| two-component system response regulator QseB [Vibrio coralliilyticus ATCC BAA-450] gi|260605015|gb|EEX31310.1| two-component system response regulator QseB [Vibrio coralliilyticus ATCC BAA-450] Length = 160 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 12/153 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P+I +S +L ++ ++G DD KP E++AR+ A RR S N + + Sbjct: 14 TPVIILSARDTLTQRVEGLNAGADDYQTKPFEMVELIARIRAQLRR--ASGNASPVMQVG 71 Query: 133 VFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 S D R +V QG+ L E +++ Y M N K +++T++ IY FD + N Sbjct: 72 SLSLDTRSSKVMWQGQAIDLTALEYKVVAYFMHNPEKVISRTELVEHIYKQDFDR--DSN 129 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E I ++RKK+ K+ + + R LGY ++ Sbjct: 130 TIEVFIGRIRKKIAPKV----IKTVRGLGYQLN 158 >gi|197123400|ref|YP_002135351.1| transcriptional regulator [Anaeromyxobacter sp. K] gi|196173249|gb|ACG74222.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. K] Length = 234 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 30/194 (15%) Query: 41 SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100 R DV ++ L GK LE+ R +R+ S VP+I ++ + + G DD + Sbjct: 48 GGRFDVVLLDLMLPGK--DGLEVCRELRSRSDVPVIVLTARGEEADRVMGLELGADDYLA 105 Query: 101 KPIHHREILARVAAIYRR-----------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 KP RE+LAR+ A+ RR ++V + RV DGR+ + G F L Sbjct: 106 KPFSPRELLARIRAVVRRATGRAGPPREVVRVGGLVVDPAARRVTLDGREVALTGYEFAL 165 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 L L G+ +A+ Q+ G +EA + + V+ H+S+LR+ KLG DP Sbjct: 166 -------LHALARRAGRVLAREQLMELAGGSAEEAFDRS-VDVHVSRLRQ----KLGDDP 213 Query: 210 -----VDSKRFLGY 218 + + R GY Sbjct: 214 RRPRLIKTVRGAGY 227 >gi|261410069|ref|YP_003246310.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286532|gb|ACX68503.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 225 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/220 (23%), Positives = 103/220 (46%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD A +++ + +G ++ F + + EE A E V ++ + + Sbjct: 5 LIADDDAHIRELLLYHLQTEGYTV--FTAADGEEASALLAEEQVHLAVVDVMMPNKDGYQ 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L IR + VP+I ++ L F G DD + KP RE+L R+ A+ RR + V Sbjct: 63 LCEEIRRYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLRRYQMV 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S ++ + + + G+V LP +E +L L + + ++ ++ I+G Sbjct: 123 SADKIRLNETTIDRKSYEVQGHGKVLMLPMKEFELLSQLASYPDRTFSREELIQLIWGT- 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D ++ V+ HI +LR++ ++ G + + R +GY ++ Sbjct: 182 DFDGDDRTVDVHIKRLRERFADRSGDFRIRTVRGVGYKLE 221 >gi|157144972|ref|YP_001452291.1| DNA-binding transcriptional regulator BaeR [Citrobacter koseri ATCC BAA-895] gi|157082177|gb|ABV11855.1| hypothetical protein CKO_00702 [Citrobacter koseri ATCC BAA-895] Length = 240 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 6/155 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S VP++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLKVSNNRAE---TGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K + P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQLDAQSPL-IVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|150007457|ref|YP_001302200.1| two-component system response regulator [Parabacteroides distasonis ATCC 8503] gi|255013954|ref|ZP_05286080.1| two-component system response regulator [Bacteroides sp. 2_1_7] gi|262382003|ref|ZP_06075141.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|298375433|ref|ZP_06985390.1| response regulator DrrA [Bacteroides sp. 3_1_19] gi|149935881|gb|ABR42578.1| two-component system response regulator [Parabacteroides distasonis ATCC 8503] gi|262297180|gb|EEY85110.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|298267933|gb|EFI09589.1| response regulator DrrA [Bacteroides sp. 3_1_19] Length = 228 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 11/149 (7%) Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++ RI+R + P+I ++ + L F+ G DD ++KP R+++ARV A+ RR Sbjct: 63 KMARILRQDEKTANTPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVIARVKAVLRR 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E + + D + V G PL ++E IL+ L+ N+G ++ +I Sbjct: 123 TSEKSKEKEIEKLEYETLALDTKRIKATVDGVEVPLTKKEFEILKLLLENKGNVFSREEI 182 Query: 174 FSAIYGLFDEA-VEENVVESHISKLRKKL 201 S I+ DE V + ++ +I++LRKK+ Sbjct: 183 LSRIWK--DEVYVLDRTIDVNITRLRKKI 209 >gi|150389477|ref|YP_001319526.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949339|gb|ABR47867.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 237 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 19/169 (11%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA S VP++ IS + F G DD + KP +E+ RV A RR Sbjct: 69 EICKRIRAISNVPILFISAKTEEIDRVLGFALGGDDYITKPFSPKEVAYRVKASLRRTNQ 128 Query: 122 SNNR-----AETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + E GP ++ D + EV G++ L +E +I Y+ N + ++K QI Sbjct: 129 RNEKYQDTIYELGPFKI--DEKKIEVIKNGQLVELLPKEYKIFLYMTKNPNQILSKEQIS 186 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGY 218 S ++G D +N + HI +LR+K+ + DP + +K+ LGY Sbjct: 187 SKVWGE-DYIGFDNTIMVHIRRLREKIED----DPSNPKHIINKKGLGY 230 >gi|326328836|ref|ZP_08195171.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium Broad-1] gi|325953367|gb|EGD45372.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium Broad-1] Length = 228 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 8/158 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R +VP+I ++ S + + G DD V KP RE++ RV ++ +R Sbjct: 61 LEVCRRLRQAGEVPIIMLTALGSEADRIMGLELGADDYVGKPFSPRELVLRVDSVLKRTG 120 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S G I V +D R G L RE +L YL+A+ GK + + ++ Sbjct: 121 HSGEGGVVSDGSIVVDADRRVATNGGAELALTTREFDLLRYLIAHPGKAFTREDLLEHVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 G + + V H+ +LR+K+ + DP +R + Sbjct: 181 GW--TIGDRSTVTVHVRRLREKIES----DPTRPERLV 212 >gi|317497326|ref|ZP_07955649.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316895395|gb|EFV17554.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 228 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 5/138 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNN 124 R +P++ I+ +L ++ D G DD + KP H +E+LARV A+ RR +++S + Sbjct: 70 RKGISIPILIITAMSTLDNRVEGLDGGADDYLVKPFHIKELLARVRALTRRPANIQLS-S 128 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + + G + D R L +E + M N ++ Q+ I+G E Sbjct: 129 KLQYGDLTFDKDSRTLSTPNNSLLLTSKETELTFVFMQNPETLFSREQLILKIWGSSSE- 187 Query: 185 VEENVVESHISKLRKKLR 202 VE V+S+IS LRK+L+ Sbjct: 188 VETGNVDSYISFLRKRLK 205 >gi|303229207|ref|ZP_07316008.1| putative Sensory transduction protein regX3 [Veillonella atypica ACS-134-V-Col7a] gi|303231556|ref|ZP_07318285.1| putative Sensory transduction protein regX3 [Veillonella atypica ACS-049-V-Sch6] gi|302513802|gb|EFL55815.1| putative Sensory transduction protein regX3 [Veillonella atypica ACS-049-V-Sch6] gi|302516220|gb|EFL58161.1| putative Sensory transduction protein regX3 [Veillonella atypica ACS-134-V-Col7a] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 12/163 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI---YR 117 E+ R IR +VP++ ++ + G DD + KP ++A++ A+ Y+ Sbjct: 62 FEVCRAIRDKVRVPIVMVTARLDDIDKIRGLGVGADDYIEKPFSPSVLIAKIKAMLAQYK 121 Query: 118 RLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RL V N ++G IR+ V + L ++E ++LE+LM NR +K ++ Sbjct: 122 RLTEKDVVDTNAIQSGDIRLDPKMMKVWVNDKEVHLKKKEFQLLEFLMRNRDIVFSKEEL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 +S ++GL D + V HI++LR+++ +P DSK + Sbjct: 182 YSRVWGL-DSYGDYATVAVHINRLREEIEE----NPSDSKHII 219 >gi|291530313|emb|CBK95898.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium siraeum 70/3] gi|291557127|emb|CBL34244.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium siraeum V10Sc8a] Length = 221 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 3/149 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETG 129 P++ ++ + + F +G DD + KP+ E+L R++A+ RR ++N ++ G Sbjct: 68 CNTPVLMVTARETSADKIAGFRAGTDDYMVKPVDDEEMLLRISALLRRSNIANEHKLHAG 127 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + D G LP +E +L L++ + K + Q+ ++ + E +E Sbjct: 128 NTVLDYDALTVTCGGVTHELPNKEFMLLFKLLSYQNKIFTRRQLMDELWDMETET-DERT 186 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ HI++LR++ R+ F+ V + R LGY Sbjct: 187 IDVHINRLRERFRDNEDFEIV-TVRGLGY 214 >gi|317129755|ref|YP_004096037.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315474703|gb|ADU31306.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 230 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 76/147 (51%), Gaps = 6/147 (4%) Query: 61 LELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL + +R H ++ P+I ++ + ++ G DD + KP +E+ ARV ++ RR Sbjct: 62 FELLKTLREHLDNKTPVILLTALGDTERIVEGLKLGADDYLVKPFEPKELAARVESVIRR 121 Query: 119 LKVSNNRAETGPIR--VFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K ++ E+ ++ VF + ++ PL ++E +I L +NRGK ++ + Sbjct: 122 TKNYKSKVESFIVKDLVFQPSNYNISFNNKILPLTKKEFQIFYRLASNRGKVYSRDHLLE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR 202 +G+ E + V++H+ +R+KL+ Sbjct: 182 LEWGMEYEG-DNRTVDTHVKNIREKLK 207 >gi|291301374|ref|YP_003512652.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570594|gb|ADD43559.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 230 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 13/134 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP------EVQGEVF 147 G DD + KP RE+ ARV + RR S A T + V + DP EV Sbjct: 102 GADDYITKPFSPRELTARVRTVLRR--ASGGSAATEALTVGAVRLDPARRRVWAADAEV- 158 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E +L LM N G+ A+ Q+ SA++G + + V+ HI++LR KL + Sbjct: 159 ELTVTEFDLLASLMRNPGQVFAREQLLSAVWG-YTASAGTRTVDVHIAQLRGKLGDH--- 214 Query: 208 DPVDSKRFLGYSID 221 P+ + R +GY+ D Sbjct: 215 SPIRTVRGVGYAAD 228 >gi|167035362|ref|YP_001670593.1| two component heavy metal response transcriptional regulator [Pseudomonas putida GB-1] gi|166861850|gb|ABZ00258.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 224 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 11/161 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +RA S ++ ++ + L + D G DD + KP E+LAR+ ++ RR ++ + Sbjct: 66 LRAESATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRR---NDQQL 122 Query: 127 ETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 + +RV DP G+ L +E +L LM G+ +++TQI S ++ + Sbjct: 123 QPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVWDMN 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + NVVE I +LR K+ + + + R +GY ++ Sbjct: 183 FD--CDTNVVEVSIRRLRAKIDDPFDNKLIHTLRGVGYVLE 221 >gi|195953525|ref|YP_002121815.1| two component transcriptional regulator, winged helix family [Hydrogenobaculum sp. Y04AAS1] gi|195933137|gb|ACG57837.1| two component transcriptional regulator, winged helix family [Hydrogenobaculum sp. Y04AAS1] Length = 225 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 75/141 (53%), Gaps = 6/141 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125 +R S++P+I ++ L+ L+ ++G DD + KP +E++ RV + RR KV + Sbjct: 68 LRLQSEIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNKVQEEK 127 Query: 126 AETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + D +D +V +G+ L +E +L+ L N K + + + + ++G+ + Sbjct: 128 IVLKDLTM--DLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWGIASD 185 Query: 184 AVEENVVESHISKLRKKLRNK 204 + N+V+ +I +R KL +K Sbjct: 186 -YDSNIVDVYIKNIRNKLEDK 205 >gi|154500018|ref|ZP_02038056.1| hypothetical protein BACCAP_03676 [Bacteroides capillosus ATCC 29799] gi|150271616|gb|EDM98873.1| hypothetical protein BACCAP_03676 [Bacteroides capillosus ATCC 29799] Length = 221 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 97/195 (49%), Gaps = 13/195 (6%) Query: 29 FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88 F++ + +E LQ ++ + ++ + L + IRA S VP++ ++ T + Sbjct: 29 FSAYDGDEALQLFECSNIDLVILDIMLPKKTGLAVLHTIRAKSSVPILMLTAISDEYTQV 88 Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRV-FS--DGRDPEVQ 143 FD DD + KP + RV A+ RR VS + G + V FS + PE + Sbjct: 89 TSFDEQADDYITKPFSMVLLGRRVTALLRRSGQTVSPDTMTFGDVTVDFSGYTAKGPEGK 148 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ P +E +L+ L+ ++G + ++Q+ +++G D + + ++++I LRKKLR Sbjct: 149 IDITP---KEIDLLKLLVEHKGLVLTRSQMLDSLWGA-DYPIIDRTIDTYIKNLRKKLR- 203 Query: 204 KLGFDPVDSKRFLGY 218 D + + + +GY Sbjct: 204 ---LDCIVTVKGIGY 215 >gi|52786788|ref|YP_092617.1| PhoP [Bacillus licheniformis ATCC 14580] gi|163119589|ref|YP_080203.2| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|319647320|ref|ZP_08001542.1| PhoP protein [Bacillus sp. BT1B_CT2] gi|52349290|gb|AAU41924.1| PhoP [Bacillus licheniformis ATCC 14580] gi|145903099|gb|AAU24565.2| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|317390667|gb|EFV71472.1| PhoP protein [Bacillus sp. BT1B_CT2] Length = 240 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 21/161 (13%) Query: 81 YPSLQTTL--DFFDS------GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----- 127 YP L T D FD G DD + KP RE+ ARV AI RR + + + E Sbjct: 75 YPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRTQTLSVQPEETEEP 134 Query: 128 ------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G +++ + + Q E L +E +L YL ++G+ + + + +A++ + Sbjct: 135 DAGELIIGELKILPEHYEVYFQNERLELTPKEFELLLYLGRHKGRVLTRDLLLNAVWN-Y 193 Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 D A + +V+ HIS LR K+ +N + + + R LGY ++ Sbjct: 194 DFAGDTRIVDVHISHLRDKIEKNTKKPEYIKTIRGLGYKME 234 >gi|194436317|ref|ZP_03068419.1| DNA-binding response regulator BaeR [Escherichia coli 101-1] gi|194425045|gb|EDX41030.1| DNA-binding response regulator BaeR [Escherichia coli 101-1] gi|323972772|gb|EGB67971.1| response regulator receiver domain-containing protein [Escherichia coli TA007] Length = 240 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167 I RR K + AE+ P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|325978470|ref|YP_004288186.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325178398|emb|CBZ48442.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 226 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 74/145 (51%), Gaps = 5/145 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + I + +Q +I ++ + + D+G DD + KP +E+LAR+ ++ RR+ Sbjct: 63 VQEIRQTGNQSHIIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRRVDTN 122 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179 ++N G + + G V L +E ++LE+ M N GK+++ QIF+ ++ Sbjct: 123 FTSNILTVGTV-TLNVGEQELVSQNTIRLAGKESKMLEFFMLNAGKKLSTDQIFNHVWAN 181 Query: 180 -LFDEAVEENVVESHISKLRKKLRN 203 D ++ V ++S LR+KL++ Sbjct: 182 DKADPEIDNGYVFIYVSYLRQKLKS 206 >gi|317509453|ref|ZP_07967071.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316252282|gb|EFV11734.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 240 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 8/145 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ ++ P++ ++ SL+ L G DD V KP E++AR+ I RR S Sbjct: 76 LRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRAGKS 135 Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E+ P VF D + G++ L E +L Y M N ++K QI Sbjct: 136 DGARES-PTLVFEDIELNEETHEVWKAGQLVSLSPTEFTLLRYFMVNARIVLSKRQILEH 194 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++ +D + NVVES++S LR+K+ Sbjct: 195 VWH-YDFGGDMNVVESYVSYLRRKI 218 >gi|229094210|ref|ZP_04225289.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|228689202|gb|EEL43024.1| DNA-binding response regulator [Bacillus cereus Rock3-42] Length = 222 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 7/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++D S + + +G DD + KP E++ARV AI RR Sbjct: 59 EICRQIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSN- 117 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + ET + +F D V+ G+ L +RE +L +L+ N+ +++ + + Sbjct: 118 CNQQHETTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ V NVV+ +I +RKKL+ + + + GYS+ Sbjct: 178 VWG-YNVVVNPNVVDLYIGYIRKKLKCEKKNRYIQTIHGRGYSM 220 >gi|160893062|ref|ZP_02073850.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50] gi|156865145|gb|EDO58576.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50] Length = 228 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 16/169 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ +++R S VP+I ++ + + G DD + KP + E+ AR+ AI RR Sbjct: 61 IEVCQMVREFSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRR-- 118 Query: 121 VSNNRAE-TGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 S +AE P+ + D R V G+ L +E +LE LMA+ K ++ Sbjct: 119 -SGKKAEPVKPVNIMEINGMKVELDSRRVFVHGKELNLTAKEFDLLELLMAHPNKVYSRN 177 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGY 218 ++ I+G + V+ H+ +LR+K+ + G +PV +K +GY Sbjct: 178 ELLDTIWGSTYPG-DARTVDVHVRRLREKIEDNPG-EPVYIHTKWGVGY 224 >gi|119468399|ref|ZP_01611490.1| Transcriptional regulatory protein in two-component regulatory system with baeS [Alteromonadales bacterium TW-7] gi|119447907|gb|EAW29172.1| Transcriptional regulatory protein in two-component regulatory system with baeS [Alteromonadales bacterium TW-7] Length = 223 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 5/146 (3%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ +EL + IR S VP+I +S L + G DD + KP + E++ARV AI Sbjct: 58 GQSGIELCKAIRRFSNVPIIMVSAKVEEIDRLLGLELGADDYICKPFSYAELVARVKAIL 117 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RRL VS +T +++ + Q L E ++ + L N + ++ + Sbjct: 118 RRLNVS--AVQTSVMQLDETTYKVKYQDNDIELTNFEFQLFKPLFNNPSRIYSRDSLMDT 175 Query: 177 IYGLFDE-AVEENVVESHISKLRKKL 201 +Y D+ V ++SHI KLRKKL Sbjct: 176 MYT--DQRIVSHRTIDSHIKKLRKKL 199 >gi|83953229|ref|ZP_00961951.1| two component transcriptional regulator, winged helix family protein [Sulfitobacter sp. NAS-14.1] gi|83842197|gb|EAP81365.1| two component transcriptional regulator, winged helix family protein [Sulfitobacter sp. NAS-14.1] Length = 218 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 10/152 (6%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 + P++ ++ + ++ + G DD V KP E+ AR+ + RR +N A+T + Sbjct: 72 RTPILILTARDKVSDRIEGLNRGADDYVIKPFDLDEVKARIHTVCRR--SANQFAQTVQL 129 Query: 132 R-VFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 V + D V P L +E + E L+ + + V K + +AIY + E VE N Sbjct: 130 HDVVVNLSDHTVMRAEQPVRLTAKEWGVFETLLRRKPQIVPKESLEAAIYD-YGEEVESN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E+HIS +LR KLG D + + R LGY++ Sbjct: 189 AIEAHIS----RLRTKLGKDLIATHRGLGYAL 216 >gi|329944314|ref|ZP_08292573.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170 str. F0386] gi|328531044|gb|EGF57900.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170 str. F0386] Length = 226 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 24/222 (10%) Query: 18 LFGDDGVSLEGFNS--LEFEEWLQSSAREDVSAIEAF-----------LIGKGEKVLELP 64 L DD SL LE E + + + A++AF L+ G +E+ Sbjct: 6 LVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAFHEVSPDLVLLDLMLPGLDGVEIC 65 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SN 123 R+IR+ S VP+I ++ Q + ++G DD V KP +E+LARV+ RR + Sbjct: 66 RLIRSESDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNPGAA 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 G + + G + V L E +L L + K + ++ S ++G + Sbjct: 126 EHVRAGDLDIDVAGHQVKRGETVIALTPLEFELLVTLARSPWKVFTREELLSQVWG-YQH 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220 + +V H+ +LR K+ DP V + R +GY + Sbjct: 185 PADTRLVNVHVQRLRAKIEK----DPERPSIVVTVRGVGYRV 222 >gi|293401928|ref|ZP_06646068.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304586|gb|EFE45835.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 11/149 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ +IIR P+I ++ + G DD + KP + E++ARV A RR K Sbjct: 62 FEICKIIREKYTFPVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQLRRYK 121 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + F +D + +V L E IL YL NRG+ V ++F Sbjct: 122 KYNTTKDNVNVIDFKGLIIDNDSHQCTLYDKVLNLTPIEFSILWYLCKNRGRVVPSEELF 181 Query: 175 SAIY--GLFDEAVEENVVESHISKLRKKL 201 A++ FD N V HI +LR+K+ Sbjct: 182 EAVWKEKYFD---SNNTVMVHIRRLREKM 207 >gi|257094547|ref|YP_003168188.1| winged helix family two component transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047071|gb|ACV36259.1| two component transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 243 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 88/172 (51%), Gaps = 14/172 (8%) Query: 53 LIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L+ G ++ R +RA H+ VP+I +S + + + G DD + KP E++AR Sbjct: 54 LMLPGADGWDVCRHLRARHADVPVIMLSARSAEAHRVLGLELGADDYLAKPFSMLELVAR 113 Query: 112 VAAIYRR---LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 V A+ RR L+ S A GP R+ + R+ +V PL RE +L +L + G Sbjct: 114 VRALLRRIEQLRSSPALASELRFGPFRLDTVRRELLRGDDVVPLTLREFDLLYFLARHPG 173 Query: 166 KRVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + ++ ++ ++G FD E+ V SHI++LR K+ + DP D +R + Sbjct: 174 RVFSRGELLQRVWGAAFDG--YEHTVNSHINRLRTKIED----DPRDPRRIV 219 >gi|229828178|ref|ZP_04454247.1| hypothetical protein GCWU000342_00235 [Shuttleworthia satelles DSM 14600] gi|229792772|gb|EEP28886.1| hypothetical protein GCWU000342_00235 [Shuttleworthia satelles DSM 14600] Length = 250 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 80/161 (49%), Gaps = 11/161 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 ++ Q P+I ++ + + FD G +D + KP RE+++R+ + R K +N Sbjct: 86 VKRDYQTPVIFLTASGDENSVVTGFDLGAEDYIAKPFRPRELVSRIRNVLRHTKRQSNIE 145 Query: 127 ETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 +RV GR + + E L E R+L + NRG+ ++++Q+ A + + V Sbjct: 146 RVQDLRVDLDSGRVFKGEQE-LSLSAMEYRLLGIFLENRGRILSRSQLLEAAWDFAGDYV 204 Query: 186 EENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221 +N + +I +LR+K+ + DP + + R LGY ++ Sbjct: 205 NDNTLSVYIKRLREKIES----DPQNPTMIRTVRGLGYRME 241 >gi|218463342|ref|ZP_03503433.1| two-component response regulator protein [Rhizobium etli Kim 5] Length = 225 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 6/164 (3%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L + R +RA P + ++ + ++ ++G DD + KP E+LARV A+ RR Sbjct: 60 LAIVRSLRAAKVGTPALFLTSIGGVDDRVEGLEAGGDDYLVKPFAFSELLARVNALGRRP 119 Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V + + + + R+ G++ L RE +LE LM G+ + KT + + Sbjct: 120 PVQEQKTVLKVADLELDLIRREARRAGQIIELQPREFTLLEVLMRGEGRVITKTMLLERV 179 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + FD + +VVE+HIS+LR K+ + + R GYS+ Sbjct: 180 WDFHFDP--KTSVVETHISRLRAKVDKPFETHLLHTVRNTGYSL 221 >gi|254448586|ref|ZP_05062045.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium HTCC5015] gi|198261775|gb|EDY86061.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium HTCC5015] Length = 236 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 4/148 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPI 131 VP+I ++ + D+G DD V+KP RE++AR+ A+ RR+ ++ + E G + Sbjct: 87 VPVIMLTARTEEDDKIVGLDAGADDYVSKPFSPRELIARIRAVLRRIGSADGQLLEVGGL 146 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + D L E R+L++ M++ + ++TQ+ ++G VEE V+ Sbjct: 147 AMDVDSHRVTYGDSNLDLGPTEYRLLQFFMSHVDRVYSRTQLLDHVWGR-SAFVEERTVD 205 Query: 192 SHISKLRKKLRNKLGFDP-VDSKRFLGY 218 H+ +LRK L G D V + R GY Sbjct: 206 VHVLRLRKAL-APYGCDKLVQTVRGAGY 232 >gi|89096124|ref|ZP_01169017.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088978|gb|EAR68086.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 238 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 8/148 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR ++P++ IS ++ + F+ G DD + KP E+ AR+ + RR + Sbjct: 66 LLRTIRKTHEIPMLIISARSEDESKVKGFNLGADDYITKPFSLEELSARITSHLRRYRRY 125 Query: 123 NNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +T + V+ +G + + G++ L +E +L L N + +K + Sbjct: 126 QGVNDTSKVNVYHNGLSIDFSQKAVHLDGQLLNLTAKEYELLHLLAKNPFETFSKEALLE 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203 I+ D + N V HI LR KL++ Sbjct: 186 MIWKQEDISA-SNTVTVHIKSLRSKLKD 212 >gi|323693830|ref|ZP_08108022.1| response regulator receiver protein [Clostridium symbiosum WAL-14673] gi|323502133|gb|EGB18003.1| response regulator receiver protein [Clostridium symbiosum WAL-14673] Length = 225 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 11/142 (7%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R Q P I + L ++ D+G DD + KP E+LAR+ A+ RRL R E Sbjct: 68 RRKIQTPAIFSTALDGLNDRINGLDAGADDYIAKPYAIEELLARIRAVTRRL----GRIE 123 Query: 128 TGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 F D R+ Q L ++E +LEY N G+ + + I ++G Sbjct: 124 EECTLTFEDLVFLPEHRELRYQNASVSLSKKESSLLEYFFRNPGRTLNREVILGYVWGAS 183 Query: 182 DEAVEENVVESHISKLRKKLRN 203 E VE+ ++++I LR++LR Sbjct: 184 SE-VEDGNLDNYIYFLRRRLRT 204 >gi|320532288|ref|ZP_08033144.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135495|gb|EFW27587.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 249 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 15/160 (9%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ ++ + + G DD V KP E++AR+ AI RR N+ + G +R Sbjct: 87 TPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHAIENQ-DDGVVR 145 Query: 133 VFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 V D + EV+ L E ++L YLM N G+ V+K QI ++ +D + Sbjct: 146 VADLILDEDAH-EVYRAEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDHVWE-YDWNGD 203 Query: 187 ENVVESHISKLRKKLRNKLGFD--PV----DSKRFLGYSI 220 +VES+IS LR+K+ G D PV ++R +GY + Sbjct: 204 AAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYML 243 >gi|291551304|emb|CBL27566.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 231 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 39/243 (16%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V DDR +V+ I L + L+ ++ +E E L+ +E+V+ + ++ Sbjct: 4 ILVCDDDREIVEAIEIYLSQEGYQILKAYDGIEALEILE---KEEVNLLIIDVM------ 54 Query: 61 LELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 +PR+ IR + +P+I +S + + G DD V KP + E++ARV Sbjct: 55 --MPRLDGIRATLKIREKNSLPIIILSAKSEDTDKILGLNIGADDYVTKPFNPLELVARV 112 Query: 113 AAIYRRLKVSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 + RR A+ G +++ D + V GE L E IL LM N+ Sbjct: 113 KSQLRRFNELGGTAQEPKETIYKVGGLQINDDLKQVTVDGEFVKLTPIEYNILLLLMKNQ 172 Query: 165 GKRVAKTQIFSAIYGLFDEAV-EENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGY 218 GK + QI+ +I+ +EA+ +N V HI +R+K+ +P D + +GY Sbjct: 173 GKVFSINQIYESIWN--EEAIGADNTVAVHIRHIREKIE----INPKDPRYLKVVWGVGY 226 Query: 219 SID 221 I+ Sbjct: 227 KIE 229 >gi|228994221|ref|ZP_04154119.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] gi|228765514|gb|EEM14170.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] Length = 223 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 6/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR +S VP+I ++ + L + G DD + KP + +LAR+ I +R S Sbjct: 63 ICREIRKNSDVPIIIVTSRDNEVDELMSMNLGADDFITKPYNTEILLARITNILKRTYGS 122 Query: 123 NNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + F + + L + E +IL YL+ N+G V + + ++ Sbjct: 123 SKASNMLSYMDFHLNLSNASVMYKNQAIELTKNEVKILSYLINNKGNIVKREFLMEHLWK 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 D V+++ + +I++LRKKL ++G +P++++R LGY Sbjct: 183 -SDYFVDDSTLTVNITRLRKKLE-EIGIENPIETRRGLGY 220 >gi|224588150|gb|ACN58774.1| DNA-binding response regulator [uncultured bacterium BLR8] Length = 239 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 8/172 (4%) Query: 33 EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFD 92 E E+W+ ++ V + L+ G+ LE+ R +R S +I ++ L + Sbjct: 49 EVEDWVMANG---VELVLLDLMLPGKSGLEVCRGLRTFSNAAIIMVTAKVEEIDRLLGLE 105 Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLP 150 G DD + KP RE++ARV A+ RR + + A G +++ + G+ L Sbjct: 106 LGADDYICKPFSPREVVARVKAVLRRSQGAGAAATPRAGGLQLDDSRWKATLDGQDLDLT 165 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDE-AVEENVVESHISKLRKKL 201 E ++L L + G+ ++ Q+ A+Y DE V + V+SH+ KLR+K+ Sbjct: 166 AVEFKLLSVLASQPGRIFSRDQLMDAMY--RDERIVADRTVDSHVKKLRRKI 215 >gi|154483083|ref|ZP_02025531.1| hypothetical protein EUBVEN_00781 [Eubacterium ventriosum ATCC 27560] gi|210610522|ref|ZP_03288448.1| hypothetical protein CLONEX_00638 [Clostridium nexile DSM 1787] gi|149736168|gb|EDM52054.1| hypothetical protein EUBVEN_00781 [Eubacterium ventriosum ATCC 27560] gi|210152381|gb|EEA83387.1| hypothetical protein CLONEX_00638 [Clostridium nexile DSM 1787] Length = 221 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 14/161 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + P+I +S +QT +D G DD + KP E+LAR+ A +R SN Sbjct: 67 LRKFTNAPVIVVSAKTMVQTKIDLLKLGADDYMTKPFDLHELLARIEANLKR--TSNTSC 124 Query: 127 ETGPIRVFSDGRDPEVQGE-------VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + RD E+ + E +IL L+ K +K ++ +I+ Sbjct: 125 QNDTLTY----RDIEINNSLVYIKEVLVSFTSTELKILRLLLQYPQKIFSKQNLYESIWN 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A +++ + +HIS +RKK++ D + + +GY I Sbjct: 181 -ETYAYDDDTINTHISHIRKKIKAITNEDYIQTIWGIGYKI 220 >gi|118443576|ref|YP_877112.1| transcriptional regulator [Clostridium novyi NT] gi|118134032|gb|ABK61076.1| transcriptional regulatory protein [Clostridium novyi NT] Length = 228 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 14/150 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR + P+I ++ + + G DD + KP +E++AR+ A+ RR Sbjct: 65 IDVLKWIRKECETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYN 124 Query: 121 VSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V N + + + +D E++ +P +E +L YL +N K + Q Sbjct: 125 VENEDKDVLKFKSLTIDINSYIVVYKDNEIK-----MPPKEFELLYYLASNCNKVFTREQ 179 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + ++G +D + V+ HI +LR+KL+ Sbjct: 180 LLCEVWG-YDYPGDSRTVDVHIKRLREKLQ 208 >gi|329925314|ref|ZP_08280255.1| sensory transduction protein RegX3 [Paenibacillus sp. HGF5] gi|328939922|gb|EGG36257.1| sensory transduction protein RegX3 [Paenibacillus sp. HGF5] Length = 232 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 10/150 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + + +P+ I+ + + + G DD + KP RE++AR+ I RRL Sbjct: 63 LDICKKVTTDYNIPIFMITAKSDITDKVLGLEFGADDYITKPFDLREVVARIRTILRRLD 122 Query: 121 VSNNRAETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +N G I + ++ R G L +E +L + +RGK ++ Sbjct: 123 QANQGDREGAPEAVIRFKGIEIVTEERLVRKDGSPVDLTPKEFDLLMTMYGHRGKIYTRS 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ ++G +D + V++HI +LRKKL Sbjct: 183 ELLDLVWG-YDFMGDTRTVDTHIQRLRKKL 211 >gi|312126427|ref|YP_003991301.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311776446|gb|ADQ05932.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 224 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 3/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 + + +P++ ++ + F+ G DD + KP E++ARV A+ RR ++S ++ Sbjct: 69 KYYGDIPILMLTVKGETNDKVKGFEVGADDYLVKPFDPIELVARVKALLRRYQISTSQTI 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + G + + + V E LP +E +L L + GK + Q+ I+G +D + Sbjct: 129 KIGELFLNKKTYECRVGEEEILLPPKEFELLFKLASYPGKTFTRDQLIEEIWG-YDYEGD 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E V+ HI +LR+K F + + R LGY ++ Sbjct: 188 ERTVDVHIKRLREKFSKYCIF-VIRTIRGLGYRLE 221 >gi|281181543|dbj|BAI57873.1| two-component regulator protein [Escherichia coli SE15] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ V + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 + + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ ++ Sbjct: 125 FSTPSPVIHIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|228476582|ref|ZP_04061264.1| response regulator [Streptococcus salivarius SK126] gi|322373913|ref|ZP_08048448.1| DNA-binding response regulator CsrR [Streptococcus sp. C150] gi|228251777|gb|EEK10842.1| response regulator [Streptococcus salivarius SK126] gi|321277285|gb|EFX54355.1| DNA-binding response regulator CsrR [Streptococcus sp. C150] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 79/166 (47%), Gaps = 9/166 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ A +RR + Sbjct: 63 EVTRRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-------EVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + D + +VQ E PL +RE +L L++N + + + ++ Sbjct: 123 EAAKNAPAKASTYRDLK-LDVQNRTVVRGDEAIPLTKREFDLLNTLLSNMNQVMTREELL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D+A+E NVV+ +I LR K+ + + R +GY I Sbjct: 182 LQVWK-YDDAIETNVVDVYIRYLRGKIDVPGKESYIQTVRGMGYVI 226 >gi|261346014|ref|ZP_05973658.1| DNA-binding response regulator PhoP [Providencia rustigianii DSM 4541] gi|282565899|gb|EFB71434.1| DNA-binding response regulator PhoP [Providencia rustigianii DSM 4541] Length = 224 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 104/224 (46%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ D ++ + ++ + + D++ ++ L E L Sbjct: 3 ILIVEDNALLRHHLTVQLKDLSHQVDSAEDAKEADYFLNESHPDIAVVDLGL--PDEDGL 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + R+ H +P++ ++ S Q + +SG DD V KP E++AR+ A+ RR Sbjct: 61 SMIKRWRSNHVTIPILVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMRRNS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ E + ++ V GE L E I+E L+ N GK V+K + +Y Sbjct: 121 GLASQVLELENFVIDLSRKEFTVNGESVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLYP 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E E + ++ + +LRKK++ + + + R GY D N Sbjct: 181 -DAELRESHTIDVLMGRLRKKIQQFHEQEVIVTVRGQGYRFDVN 223 >gi|218234629|ref|YP_002369621.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218162586|gb|ACK62578.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 8/152 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 64 VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123 Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I V R V L E IL Y M N+G + + Q+ S Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 I+G ++ A ++ V SHI LR KL K + Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|86159336|ref|YP_466121.1| two component transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85775847|gb|ABC82684.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-C] Length = 245 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 90/194 (46%), Gaps = 30/194 (15%) Query: 41 SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100 + R DV ++ L GK LE+ R +R+ S VP+I ++ + + G DD + Sbjct: 59 AGRFDVVLLDLMLPGK--DGLEVCRELRSRSDVPVIVLTARGEEADRVMGLELGADDYLA 116 Query: 101 KPIHHREILARVAAIYRR-----------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 KP RE+LAR+ A+ RR ++V + RV DGR+ + G F L Sbjct: 117 KPFSPRELLARIRAVVRRATGRAGPPREAVRVGGLVVDPAARRVTLDGREVTLTGYEFAL 176 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 L L G+ +A+ Q+ G +EA + + V+ H+S+LR+ KLG DP Sbjct: 177 -------LHALARRAGRVLAREQLIELAGGSAEEAFDRS-VDVHVSRLRQ----KLGDDP 224 Query: 210 -----VDSKRFLGY 218 + + R GY Sbjct: 225 RRPRLIKTVRGAGY 238 >gi|76811571|ref|YP_333149.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|76581024|gb|ABA50499.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] Length = 389 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 3/134 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAE 127 + +P++ +++ ++ ++G DD + KP RE +ARV A+ RR +S E Sbjct: 230 APLPILVLTNAVLETDLVEALEAGADDYLIKPPREREFVARVNALRRRASISKQFEGTIE 289 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G R+ + R + GE PL +E I+E L + G+ V + I S ++G E Sbjct: 290 IGGYRIATVERAVYLAGERIPLSPKEYEIVELLARHVGQVVPRKTIISRVWGRAAEEEVS 349 Query: 188 NVVESHISKLRKKL 201 +++HI ++R+K+ Sbjct: 350 RSLDTHIYRIRRKM 363 >gi|78066346|ref|YP_369115.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77967091|gb|ABB08471.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 221 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 35/221 (15%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV- 60 +L++D ++ D A G+ G+ + +W DV A L+G G Sbjct: 3 ILLVEDDVMLADAVCA-----GLRQNGWRA----DW-----SADVPAARLALVGHGYDAV 48 Query: 61 ---LELP--------RIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108 L+LP +RA + P++ ++ L + D+G DD + KP E+ Sbjct: 49 LLDLQLPGASGFTLLAAMRANYDPTPVLIVTARDQLSDRIRGLDAGADDYLVKPFQLDEL 108 Query: 109 LARVAAIYRRLKVSNNRAETGPIR--VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANR 164 AR+ A+ RR S R I V D EV GE L E R L LM + Sbjct: 109 YARLRALTRR---SQGRVSERLIYRDVHVDPARKEVTRAGEPVALSIHEYRTLLALMERQ 165 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 G+ V +TQ+ +YG D A+E N + +I +LR+KL ++L Sbjct: 166 GRVVTRTQLEERVYG-NDSAIESNTIAVYIHQLRRKLGDEL 205 >gi|332969546|gb|EGK08565.1| subtilin biosynthesis regulatory protein SpaR [Desmospora sp. 8437] Length = 226 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 35/225 (15%) Query: 1 MFVLIDDRALVK--------DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52 + V+ D+RA+V +GY L DG S+ W + + D+ ++ Sbjct: 5 ILVVDDERAMVSMIRDALEDEGYQVLTAYDGESV----------WDLLNRKPDLILLDIM 54 Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 + G +++ R IR P++ +S ++ ++ G DD + KP E++ARV Sbjct: 55 M--PGLDGIQVCRWIRDSVSCPILFLSARREVEDRIEGLAVGGDDYITKPFSLEELVARV 112 Query: 113 AAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGK 166 AA RR S ++ +T G R+ D + EV+ + P+ +E ++ +L + G+ Sbjct: 113 AAHLRRELRSPDQEKTVLRFG--RLLIDLKACEVRYGDRLIPMTAKEFEVIRFLAMHAGQ 170 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPV 210 ++ QI+ ++G F E + V E HI KK+R KLG DPV Sbjct: 171 VFSREQIYEGVWG-FGEGSDATVTE-HI----KKIRAKLGAVDPV 209 >gi|331268651|ref|YP_004395143.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329125201|gb|AEB75146.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 219 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 84/161 (52%), Gaps = 8/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR VP++ ++ S L + G DD + KP + +LAR+ AI +R+ + Sbjct: 59 ICREIRKQLNVPIVIVTSRDSDMDELMSINLGADDFITKPYNTEILLARIGAILKRVYGN 118 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G S+G + E+ + + E +IL +L+ N+G V++ + ++ Sbjct: 119 SMNQDILNYEGLKLNLSNGTITYNENEL-EITKNEIKILSFLIKNKGNIVSRESLMDYLW 177 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 D V++N + +I++LRKKL LG + ++++R LGY Sbjct: 178 ST-DFFVDDNTLSVNITRLRKKLE-CLGLKNVIETRRGLGY 216 >gi|323359410|ref|YP_004225806.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275781|dbj|BAJ75926.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 244 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 9/164 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + + VP++ ++ ++ + +G DD V KP E++AR+ + RR + Sbjct: 80 LQRLRHSGNDVPVLFLTAKDAVADRVAGLTAGGDDYVTKPFSLEEVVARLRGLMRRAGTA 139 Query: 123 NNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R G + + D + G L E +L +LM N+ + V+K QI + Sbjct: 140 LTRDSEPILRVGDLSLNEDSHEVVRGGHEIELTATEFELLRFLMRNQRRVVSKAQILDRV 199 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + +D +VVE +IS LRKK+ G DP + + R +GY I Sbjct: 200 WN-YDFGGRSSVVELYISYLRKKI--DAGHDPLIHTVRGVGYMI 240 >gi|268507216|ref|YP_003294015.1| response regulator [Escherichia coli ETEC H10407] gi|301050086|ref|ZP_07196995.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|266265537|dbj|BAI49241.1| response regulator [Escherichia coli ETEC H10407] gi|300298188|gb|EFJ54573.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|309705589|emb|CBJ04441.1| putative two-component response regulator [Escherichia coli ETEC H10407] Length = 240 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 9/151 (5%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IR + +P+I IS S + + G DD + KP +E++ARV A++RR Sbjct: 64 LEICRRIRQMAGYLPVIIISARTSEIHRILGLEMGADDYLPKPFSVQELIARVKALFRRQ 123 Query: 120 KV--SNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + N R E G IR DP + GE+ L RE +L + + G+ ++ Sbjct: 124 EAMGQNIRLEGGLIRCHGLHIDPLAREVRLCGELIDLTPREFDLLYWFARHPGEVFSRLS 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G E E+ V +HI++LR K+ + Sbjct: 184 LLDNVWGYQHEGY-EHTVNTHINRLRTKIEH 213 >gi|229544244|ref|ZP_04433303.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229325383|gb|EEN91059.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 230 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 15/163 (9%) Query: 65 RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R IRAHS VP++ +S D+P+ + G DD V KP H ++A++ AI RR V Sbjct: 65 RQIRAHSHVPILFLSSRDHPT--DMVMAMQLGADDYVQKPFHIDVLIAKIQAILRR--VY 120 Query: 123 NNRAETGPIRVFS----DGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +E ++ + D + V+ E L + E IL+ L+ + + V++T + Sbjct: 121 AYTSEQTVLKTWCGATIDLQKNTVENEHGCIELSKNEMFILKILVDMKNRIVSRTHLIEC 180 Query: 177 IYGLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ DE V +N + ++++LRKKL D +++K GY Sbjct: 181 LWD--DERFVSDNTLTVNVNRLRKKLSTIGLGDCIETKVGQGY 221 >gi|228999228|ref|ZP_04158808.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|228760425|gb|EEM09391.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 235 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 11/164 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKV 121 R IR S P+I +S + ++G DD + KP H ++A+V ++ RR Sbjct: 65 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYIAKPFHLDIVMAKVKSVLRRGYGEYA 124 Query: 122 SNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S+ ++ +R +F E QG+ L + E +LE LM + V + ++ A Sbjct: 125 SSAESDCFGVRGLLLFPSQHTVEWQGKQIELTKNEFYLLECLMKQANQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL + + +KR GY++ Sbjct: 183 -LWDELAFVDDNTLTVNVKRVRKKLEELGIVNAIVTKRGYGYAL 225 >gi|156974939|ref|YP_001445846.1| hypothetical protein VIBHAR_02658 [Vibrio harveyi ATCC BAA-1116] gi|269963434|ref|ZP_06177761.1| DNA-binding response regulator [Vibrio harveyi 1DA3] gi|156526533|gb|ABU71619.1| hypothetical protein VIBHAR_02658 [Vibrio harveyi ATCC BAA-1116] gi|269831834|gb|EEZ85966.1| DNA-binding response regulator [Vibrio harveyi 1DA3] Length = 219 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 22/217 (10%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L +G++ DG+ + EEW + ++ + KG I Sbjct: 19 TLENNGWVPELSQDGI--DALYRATSEEWDAIVLDLGLPKLDGLTVLKG--------IRD 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 + P++ +S +L ++ ++G DD + KP E+ AR+ A RR S N + Sbjct: 69 ENINTPVVILSARDTLSQRVEGLNAGADDYLTKPFEMVELTARLRAQLRR--ASGNASPV 126 Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 I S D R +V QG+ L E +++ Y M N K +++T++ IY FD Sbjct: 127 MQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFMHNPEKVISRTELVEHIYKQDFDR- 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + N +E I ++RKK+ K+ + + R LGY ++ Sbjct: 186 -DSNTIEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217 >gi|149277685|ref|ZP_01883825.1| two-component system response regulator [Pedobacter sp. BAL39] gi|149231373|gb|EDM36752.1| two-component system response regulator [Pedobacter sp. BAL39] Length = 224 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 2/166 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ + LP + + + ++ +L+ + D G DD + KP E+ +R+ AI Sbjct: 57 GDGLSLLPAAKKHNPDAAYVILTARGNLEDRIAGLDLGADDYLAKPFSLLELQSRMQAIA 116 Query: 117 RR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + G + R E L R+E + YL+ ++ + + + Q+ Sbjct: 117 RRKFNIKEELLRLGDFSIDLQKRVIHCGTEQIELSRKEFDLFSYLLLHQNRVLTRMQLSE 176 Query: 176 AIYGLF-DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G F D+ + N +++HI +RKKL D +++ R +GY I Sbjct: 177 HIWGTFADDDYDSNYIDAHIKNIRKKLNVHAPTDFLETVRGVGYRI 222 >gi|126697149|ref|YP_001092035.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126544192|gb|ABO18434.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] Length = 248 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 13/150 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IRA S VP+I ++ ++ + D G DD ++KP +E+ AR+A I RR+ S + Sbjct: 67 RRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPSIS 126 Query: 125 RAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ET G + V ++ R G+ L E +LE L GK V + + Sbjct: 127 VTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGDRISLTYTEFSLLELLFDEPGKVVPRAE 186 Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201 I ++G A + VV+ ++++LR KL Sbjct: 187 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 216 >gi|254247838|ref|ZP_04941159.1| Response regulator receiver [Burkholderia cenocepacia PC184] gi|124872614|gb|EAY64330.1| Response regulator receiver [Burkholderia cenocepacia PC184] Length = 270 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 9/154 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128 P++ +S + + +G DD + KP E+ AR+ + RR + S +T Sbjct: 119 TPVLMLSALGDVDERIRGLRAGGDDYLTKPFDSGELSARIEVLLRRRQASGVPQQTLLKV 178 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187 G + + R + PL E R+LE++M N G+ + +T +F A++G FD Sbjct: 179 GVLELDLISRCARRGTDEIPLLPTEFRVLEFMMRNAGQTITRTMLFEAVWGYHFDPGT-- 236 Query: 188 NVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 N+++ H+ +LRKK+ + G +P + + R GY + Sbjct: 237 NLIDVHMGRLRKKI-DPPGANPMIQTVRGSGYML 269 >gi|118595246|ref|ZP_01552593.1| phosphate regulon transcriptional regulatory protein phoB [Methylophilales bacterium HTCC2181] gi|118441024|gb|EAV47651.1| phosphate regulon transcriptional regulatory protein phoB [Methylophilales bacterium HTCC2181] Length = 231 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 23/209 (11%) Query: 28 GFN-----SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGIS 79 GFN S EF E + D+ ++ L G +E + IR S ++P+I ++ Sbjct: 26 GFNPIRSLSAEFAEKIIQKNLPDLIILDWML--PGMDGVEFAKRIRGSSTTRKIPIIMLT 83 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-------VSNNRAETGPIR 132 L + G DD + KP +E++AR+ AI RR ++ N E PI+ Sbjct: 84 AKSEEDNKLKGLNIGADDYMTKPFSPKELIARIKAILRRNAPELVNEPINMNGLELDPIK 143 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 D ++ + E ++L + M+N ++ QI ++G +++ V+ Sbjct: 144 YVLTNND-----KIISIGPTEFKLLNFFMSNPNIAFSRNQILDKVWG-NKSDIDDRTVDV 197 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221 HI +LR L++ + + R LGY ++ Sbjct: 198 HIKRLRDTLKHTGQHSLIKTVRGLGYRLE 226 >gi|52082494|ref|YP_081285.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52787890|ref|YP_093719.1| YtsA [Bacillus licheniformis ATCC 14580] gi|319648372|ref|ZP_08002588.1| YtsA protein [Bacillus sp. BT1B_CT2] gi|52005705|gb|AAU25647.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52350392|gb|AAU43026.1| YtsA [Bacillus licheniformis ATCC 14580] gi|317389451|gb|EFV70262.1| YtsA protein [Bacillus sp. BT1B_CT2] Length = 228 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 14/146 (9%) Query: 65 RIIRAHSQVPLIGIS--DYPS-LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR+ S VP++ +S D+P+ + ++ F G DD + KP H ++A++ AI+RR+ Sbjct: 65 RQIRSRSNVPILFLSSRDHPADMVMSMQF---GADDYIQKPFHFDVLIAKIQAIFRRVYD 121 Query: 122 SNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N E DPE + L R E IL+ L+ + K V++ ++ + Sbjct: 122 YNTEPEILKKTWCGATVDPEQNRVSNKAGAIELTRNEMFILKQLIDQKNKIVSREELMRS 181 Query: 177 IYGLFDEA-VEENVVESHISKLRKKL 201 ++ DE V +N + ++++LRKKL Sbjct: 182 LWN--DERFVSDNTLTVNVNRLRKKL 205 >gi|23099970|ref|NP_693436.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] gi|22778201|dbj|BAC14471.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] Length = 225 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 4/136 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128 S+ +I ++ + LD + G DD + KP H E++ARV A+ RR+ NN + Sbjct: 69 SKCAVIMLTALGDVNYRLDGLNQGADDYIAKPFHGEELVARVQAVLRRIGNKNNNSNVIK 128 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + + + G + L R+ +L + N + + Q+ +I+G +D + Sbjct: 129 FGTLEIDVVAHRVRLLGTIIELTPRDLSLLLFFADNPNRTFTREQLLDSIWG-WDYDGSD 187 Query: 188 NVVESHISKLRKKLRN 203 V+ I +LRK L++ Sbjct: 188 RAVDLSIKRLRKSLKD 203 >gi|329947323|ref|ZP_08294588.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Actinomyces sp. oral taxon 170 str. F0386] gi|328525481|gb|EGF52527.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Actinomyces sp. oral taxon 170 str. F0386] Length = 249 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 15/160 (9%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ ++ + + G DD V KP E++AR+ AI RR N+ + G +R Sbjct: 87 TPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTHAIENQ-DDGVVR 145 Query: 133 VFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 V D + EV+ L E ++L YLM N G+ V+K QI ++ +D + Sbjct: 146 VADLVLDEDAH-EVYRSEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDHVWE-YDWNGD 203 Query: 187 ENVVESHISKLRKKLRNKLGFD--PV----DSKRFLGYSI 220 +VES+IS LR+K+ G D PV ++R +GY + Sbjct: 204 AAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYML 243 >gi|300936615|ref|ZP_07151519.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300458196|gb|EFK21689.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|323968214|gb|EGB63623.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|323977760|gb|EGB72846.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] gi|324114498|gb|EGC08467.1| response regulator receiver domain-containing protein [Escherichia fergusonii B253] gi|325497900|gb|EGC95759.1| DNA-binding transcriptional regulator BaeR [Escherichia fergusonii ECD227] gi|327253212|gb|EGE64866.1| transcriptional regulatory protein baeR [Escherichia coli STEC_7v] Length = 240 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 8/154 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167 I RR K + AE+ P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ Q+ + +Y + V + ++SHI LR+KL Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212 >gi|291287384|ref|YP_003504200.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290884544|gb|ADD68244.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 234 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 90/180 (50%), Gaps = 10/180 (5%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD 89 N L E++L+SS S I ++ +L + +R +S +P+I +S ++ + Sbjct: 34 NPLMLEKYLKSSKP---SVIILDIMMPHINGFDLCKKLRKNSDIPVIMLSARGEVEDRIA 90 Query: 90 FFDSGVDDVVNKPIHHREILARVAAIYRRLK----VSNNRA--ETGPIRVFSDGRDPEVQ 143 ++G DD + KP RE++AR+ A+ +R + +NN A + G + + +D + Sbjct: 91 GLEAGADDYLAKPFEPRELIARIYAVIKRFEHSEDTANNAAVYQYGELSIDTDKYKATMD 150 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 G L + E IL ++ N +++ ++++ + G FD V+ +S+LR KL + Sbjct: 151 GSNLELTKTEFIILSLMVRNPYILLSRDRLYNELTG-FDCDAYNRTVDISVSRLRTKLND 209 >gi|198275196|ref|ZP_03207727.1| hypothetical protein BACPLE_01355 [Bacteroides plebeius DSM 17135] gi|198271779|gb|EDY96049.1| hypothetical protein BACPLE_01355 [Bacteroides plebeius DSM 17135] Length = 225 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 4/150 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G +LE + + V ++ D SL+ + D G DD + KP H E+ AR+ + Sbjct: 57 GSGLDLLEELHALGKRTNVIILSAKD--SLEDKVKGLDLGADDYLPKPYHLAELHARLKS 114 Query: 115 IYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++RR + + G + V D V G+ L R+E IL Y M G+ V KT + Sbjct: 115 LFRRNQREGEKKVSYGNVEVIPDHFKVAVGGKELDLNRKEYDILLYFMLRPGRLVNKTTL 174 Query: 174 FSAIYGLFDEAVEE-NVVESHISKLRKKLR 202 +++G + V+ + + + I LRK L+ Sbjct: 175 AESVWGDHIDQVDNFDFIYAQIKNLRKHLK 204 >gi|49484305|ref|YP_041529.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|82751682|ref|YP_417423.1| two component sensor protein [Staphylococcus aureus RF122] gi|257426219|ref|ZP_05602634.1| two component sensor protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428877|ref|ZP_05605271.1| two component sensor protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431486|ref|ZP_05607859.1| two component sensor protein [Staphylococcus aureus subsp. aureus 68-397] gi|257434196|ref|ZP_05610546.1| two component sensor protein [Staphylococcus aureus subsp. aureus E1410] gi|257437109|ref|ZP_05613149.1| two component sensor protein [Staphylococcus aureus subsp. aureus M876] gi|258422919|ref|ZP_05685819.1| two component sensor protein [Staphylococcus aureus A9635] gi|282904747|ref|ZP_06312621.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus C160] gi|282906425|ref|ZP_06314276.1| two-component system OmpR family KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus Btn1260] gi|282909393|ref|ZP_06317208.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911646|ref|ZP_06319445.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282914926|ref|ZP_06322706.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus M899] gi|282917429|ref|ZP_06325182.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus D139] gi|282920257|ref|ZP_06327981.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus C427] gi|282925468|ref|ZP_06333122.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus C101] gi|283958859|ref|ZP_06376304.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus A017934/97] gi|293508998|ref|ZP_06667785.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus 58-424] gi|293510910|ref|ZP_06669609.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus M809] gi|293547512|ref|ZP_06672187.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus M1015] gi|295428667|ref|ZP_06821293.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589856|ref|ZP_06948496.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus MN8] gi|49242434|emb|CAG41148.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|82657213|emb|CAI81653.1| two component sensor protein [Staphylococcus aureus RF122] gi|257270924|gb|EEV03097.1| two component sensor protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257274219|gb|EEV05736.1| two component sensor protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257277727|gb|EEV08397.1| two component sensor protein [Staphylococcus aureus subsp. aureus 68-397] gi|257280835|gb|EEV10980.1| two component sensor protein [Staphylococcus aureus subsp. aureus E1410] gi|257283502|gb|EEV13629.1| two component sensor protein [Staphylococcus aureus subsp. aureus M876] gi|257846943|gb|EEV70957.1| two component sensor protein [Staphylococcus aureus A9635] gi|282312869|gb|EFB43270.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus C101] gi|282316117|gb|EFB46498.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus C427] gi|282318631|gb|EFB48988.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus D139] gi|282321129|gb|EFB51460.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus M899] gi|282324411|gb|EFB54724.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282326663|gb|EFB56961.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330375|gb|EFB59893.1| two-component system OmpR family KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus Btn1260] gi|282594780|gb|EFB99757.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus C160] gi|283789577|gb|EFC28400.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus A017934/97] gi|290919632|gb|EFD96705.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus M1015] gi|291094702|gb|EFE24974.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus 58-424] gi|291466195|gb|EFF08722.1| two-component system, OmpR family, KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus M809] gi|295127337|gb|EFG56977.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576984|gb|EFH95698.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus MN8] gi|302333726|gb|ADL23919.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JKD6159] gi|312437506|gb|ADQ76577.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus TCH60] gi|315193239|gb|EFU23637.1| two component sensor protein [Staphylococcus aureus subsp. aureus CGS00] Length = 231 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 17/200 (8%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRA 69 D I D ++L+ +N E Q+ + + + L+ G + L L IR Sbjct: 11 DHAITHLLDVALTLDYYNVTTAENATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 H+ +P+I IS QT + D+G +D + KP + E+ AR+ I R ++ + ET Sbjct: 71 HTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIER---IAKSHQETN 127 Query: 130 PIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 VF++G + + + L E +LE L ++GK + I IYG Sbjct: 128 I--VFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIYGYV 185 Query: 182 DEAVEENVVESHISKLRKKL 201 ++ E + H++ LR+KL Sbjct: 186 NKT-EMPSLRVHMTSLRQKL 204 >gi|256839706|ref|ZP_05545215.1| phosphate regulon transcriptional regulatory protein PhoB [Parabacteroides sp. D13] gi|256738636|gb|EEU51961.1| phosphate regulon transcriptional regulatory protein PhoB [Parabacteroides sp. D13] Length = 228 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 11/149 (7%) Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++ RI+R + P+I ++ + L F+ G DD ++KP R+++ARV A+ RR Sbjct: 63 KMARILRQDEKTANTPIIFLTAKDTENDMLTGFNLGADDYISKPFSIRQVIARVKAVLRR 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E + + D + V G PL ++E IL+ L+ N+G ++ +I Sbjct: 123 TSEKSKEKEIEKLEYETLALDTKRIKATVDGVEVPLTKKEFEILKLLLENKGNVFSREEI 182 Query: 174 FSAIYGLFDEA-VEENVVESHISKLRKKL 201 S I+ DE V + ++ +I++LRKK+ Sbjct: 183 LSRIWK--DEVYVLDRTIDVNITRLRKKI 209 >gi|228932078|ref|ZP_04094970.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827661|gb|EEM73403.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 242 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S +P+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 79 ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 135 Query: 122 SNNRAETGPIRV-FSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + +++ R V E L E +L + + +++ Q+ I+G Sbjct: 136 TNQHAQIQYHGILWNEARHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 195 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D+ K G W Sbjct: 196 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 237 >gi|227431100|ref|ZP_03913158.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353140|gb|EEJ43308.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 8/148 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R + P+I ++ S+ + D G DD + KP E+LAR+ ++ RR+ Sbjct: 61 LEVARRLREVKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRRIT 120 Query: 121 V---SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + +N++ + +R+ + R ++ L +RE +L L+ N ++ Q+ Sbjct: 121 IETETNDKHRSIINFKDLRIEKENRIARRDDQIINLTKREYDLLLTLVENINVVQSREQL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G F+ VE NVV+ +I LR K+ Sbjct: 181 LKEVWG-FNSEVETNVVDVYIRYLRNKI 207 >gi|255280860|ref|ZP_05345415.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM 14469] gi|255268797|gb|EET62002.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM 14469] Length = 232 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 63/228 (27%), Positives = 103/228 (45%), Gaps = 41/228 (17%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDV--SAIEAFLIGKGEKVLELPRII 67 L +GY + DGV EG + +F E DV I+ F VLEL I Sbjct: 21 LCGNGYGVVLAGDGV--EGIH--KFHEHTCDLVLLDVMLPKIDGF------GVLEL---I 67 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------- 118 R S+VP++ ++ + + D DD + KP + +L ++AA+ RR Sbjct: 68 RRESEVPVMMLTALEEEEYQIRGLDLKADDYITKPFSVQVLLRKIAAVLRRANRDAGQEQ 127 Query: 119 LKVSNNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N R + V+ D +PE L ++E +L L+ N+G + + ++ Sbjct: 128 IVYKNLRLDPAGHHVYVGQENGDITEPE-------LTQKEFELLHVLLINKGIVLTRQKL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++G D EE +V++HI LRK KLG + + R +GY ID Sbjct: 181 LNLVWG-EDYFGEERIVDTHIKNLRK----KLGPGCISTIRGVGYRID 223 >gi|229541515|ref|ZP_04430575.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229325935|gb|EEN91610.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 230 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 6/113 (5%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-----ETGPIRVFSDGRDPEVQGEVFP 148 G DD + KP RE++ARV AI RR + + G +R+ + + + + Sbjct: 96 GADDYITKPFSPREVVARVKAILRRAETKTEEETAEAIKVGDLRILPEQFEAYFKEKKLE 155 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L +E +L YL + GK +++ Q+ +A++ FD A + +V+ HIS LR+K+ Sbjct: 156 LTPKEFELLLYLANHAGKVLSRDQLLNAVWN-FDFAGDTRIVDVHISHLREKM 207 >gi|126699566|ref|YP_001088463.1| two-component response regulator [Clostridium difficile 630] gi|255101086|ref|ZP_05330063.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255306951|ref|ZP_05351122.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|115251003|emb|CAJ68832.1| Two-component response regulator [Clostridium difficile] Length = 223 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 34/237 (14%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLI-GKGE 58 ++I+D + +G F +DG ++ F + +E L +S D ++ L G G Sbjct: 3 LLIIEDDINLNEGLFYAFENDGFNV--FKAYTKQEGLNIFNSKNIDFIILDCNLPDGDG- 59 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++ +IIR S +P+I ++ S + + G+DD + KP + ARV R Sbjct: 60 --FDVCQIIREKSDIPIIMLTARDSEIDEVKGLEIGLDDYITKPFSLSVLKARVKVAIR- 116 Query: 119 LKVSNNRAETGPIRVFSDG--RDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKT 171 K SNN+ ++S+G D ++ E L E ++L YL+ N+G+ + K Sbjct: 117 -KKSNNKV------IYSNGIKLDQKLLKVYKNKECLELSSVEYKLLSYLIENKGQILLKE 169 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSIDWN 223 QI I+ + V++N+V +I +LR K+ + DP + K +GY WN Sbjct: 170 QILHHIWDSEENYVDDNIVSVNIRRLRVKVED----DPSNPKYIKTAYGMGYL--WN 220 >gi|86609935|ref|YP_478697.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558477|gb|ABD03434.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 233 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 68/133 (51%), Gaps = 4/133 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ + P++ ++ +L ++ D+G DD + KP RE+LARV A+ RR + Sbjct: 69 RVRQVDCTTPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRRTTGTGE 128 Query: 125 ---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + G + + + + QG + L ++E R+LEY M + G+ + QI+ ++ Sbjct: 129 GIPRLQIGDLELDRENQVAYRQGRMIHLSQKEFRLLEYFMTHPGQLLTHDQIYEQVWA-G 187 Query: 182 DEAVEENVVESHI 194 ++ NV+ + + Sbjct: 188 EDPPSSNVLAAQV 200 >gi|16419611|gb|AAL20028.1| Copper resistance transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261246309|emb|CBG24118.1| response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301157639|emb|CBW17131.1| response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332987989|gb|AEF06972.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 248 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 98/214 (45%), Gaps = 14/214 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + L + GY+ + DG + L + +E S I ++ G ++ R + Sbjct: 40 QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 88 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ + R Sbjct: 89 RTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPAFTRLT 148 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 + + + + G+ L R+E +L L + G+ V +T I S ++G+ FD E Sbjct: 149 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 206 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N V+ I +LR K+ + + + R +GY + Sbjct: 207 TNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240 >gi|150388920|ref|YP_001318969.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948782|gb|ABR47310.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 232 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 6/145 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR S VP++ ++ + D G DD + KP +E++ARV AI RR Sbjct: 66 EICNRIRLQSDVPILMLTAKVEETDQIHGLDIGADDYMTKPFSPKELMARVRAIMRRTSN 125 Query: 122 SNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RA G ++V G + +GE+ L E ++L + N GK ++ ++ Sbjct: 126 EGVRAHLIELNGGDLKVDIRGMETRKKGELMDLTATEFKLLSIFIQNSGKVFSREELVLK 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 + G +D + ++ HI +R K+ Sbjct: 186 VLG-YDYVGYDRTIDVHIKNVRHKI 209 >gi|186685124|ref|YP_001868320.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467576|gb|ACC83377.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 787 Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 12/153 (7%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIR 132 P++ I+ + D+G DD + KP++ RE+ ARV A+ RR E G +R Sbjct: 74 PILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRRGDTPRPPVLEVGALR 133 Query: 133 VFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 + DP + +V L +E +LE L+ N + ++ I ++ FD+ +E Sbjct: 134 L-----DPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLW-TFDDPPQE 187 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+SHI LR KL+ D +++ LGY + Sbjct: 188 ETVKSHIKGLRHKLKVVGAVDWIENVYGLGYRL 220 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 13/146 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSARED-VSAIEAFLIGKGEKV 60 +++DD L+ + G+ + G + L F E LQS+A + + +E I Sbjct: 503 LVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISG---- 558 Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL + +R Q +P++ ++ + ++T F +G DD V KP+ E+LAR+ Sbjct: 559 IELCQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLE 618 Query: 118 RLK----VSNNRAETGPIRVFSDGRD 139 R + +S TG F RD Sbjct: 619 RSRLLQSLSTKDPLTGLANQFQSSRD 644 >gi|320353323|ref|YP_004194662.1| winged helix family two component transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320121825|gb|ADW17371.1| two component transcriptional regulator, winged helix family [Desulfobulbus propionicus DSM 2032] Length = 226 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 3/145 (2%) Query: 65 RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +RA + P++ ++ + + + D G DD ++KP E+LAR+ A+ RR Sbjct: 64 RELRAEGVKTPVLMLTAKGEVDSRVKGLDLGADDYLHKPFSMAELLARIRALLRRSHEQI 123 Query: 124 NRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LF 181 + T G IR+ ++ R + + L +E +LE+L NR + +++ + ++G F Sbjct: 124 SPVLTIGNIRLDTNTRIVTLDNQPVSLTPKEFSLLEFLFYNRNRAISRFTMAEHVWGDAF 183 Query: 182 DEAVEENVVESHISKLRKKLRNKLG 206 D N ++ HI +RKKL ++ G Sbjct: 184 DPFTMSNNIDVHIKNVRKKLNDQGG 208 >gi|218699328|ref|YP_002406957.1| DNA-binding transcriptional regulator BaeR [Escherichia coli IAI39] gi|218369314|emb|CAR17072.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli IAI39] Length = 240 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 77/154 (50%), Gaps = 8/154 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167 I RR K + AE+ P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ Q+ + +Y + V + ++SHI LR+KL Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212 >gi|325663231|ref|ZP_08151681.1| hypothetical protein HMPREF0490_02422 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470685|gb|EGC73915.1| hypothetical protein HMPREF0490_02422 [Lachnospiraceae bacterium 4_1_37FAA] Length = 221 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 14/161 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + P+I +S +QT +D G DD + KP E+LAR+ A +R SN Sbjct: 67 LRKFTNAPVIVVSAKTMVQTKIDLLKLGADDYMTKPFDLHELLARIEANLKR--TSNTSC 124 Query: 127 ETGPIRVFSDGRDPEVQGE-------VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + RD E+ + E +IL L+ K +K ++ +I+ Sbjct: 125 QNDTLTY----RDIEINNSLVYIKEVLVSFTSTELKILRLLLQYPQKIFSKQNLYESIWN 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A +++ + +HIS +RKK++ D + + +GY I Sbjct: 181 -ETYAYDDDTINTHISHIRKKIKAITNEDYIQTIWGIGYKI 220 >gi|313904570|ref|ZP_07837945.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313470540|gb|EFR65867.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 243 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 74/148 (50%), Gaps = 12/148 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA---IYRRL-K 120 R IR S VP++ +++ + + F +G DD + KP E+ R+ A YR+ + Sbjct: 72 RKIRDFSDVPVLFLTEKAPEEEKIMGFHAGADDYIEKPCSFSELYMRIMANVRWYRKTQQ 131 Query: 121 VSNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + E G P+ D R G+ L RE +L YLM N K V+ I Sbjct: 132 LEQKQKEAGKLTISVPPLVAELDRRMITCDGQEVQLSNREYELLLYLMQNTEKPVSFEDI 191 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 + ++G++ E+ ++++ +IS+LRKKL Sbjct: 192 GTKLFGIYQESDRQSLM-VYISRLRKKL 218 >gi|255034386|ref|YP_003085007.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254947142|gb|ACT91842.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 231 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 8/152 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-----RLKVSNNRAE 127 +P+I ++ Y ++ ++ +G D + KP RE++AR+ A R RL N Sbjct: 77 LPVIMLTAYGEIEDKVEGLGNGATDYIVKPFDSRELVARIHAALRLSDAGRLDAGNRVLG 136 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 +++ D + G+ L +E +LEY + N G ++K + I+ L FD Sbjct: 137 IADLQLNVDTKVVTRAGKFIGLTAKEFALLEYFLLNPGTVISKMDLVKNIWHLNFDPGT- 195 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 N VE +I+ LRKK+ + ++ LGY Sbjct: 196 -NFVEVYINYLRKKIDKGFDVKLIQTRPGLGY 226 >gi|328948475|ref|YP_004365812.1| transcriptional regulator [Treponema succinifaciens DSM 2489] gi|328448799|gb|AEB14515.1| two component transcriptional regulator, winged helix family [Treponema succinifaciens DSM 2489] Length = 225 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 8/166 (4%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ +I+RA VP++ +S+ PS+ ++ DSG DD + +P+ E LAR+ A+ RR Sbjct: 60 LEVVKILRAKKNFVPVLLMSENPSVDEIVEGLDSGADDYIRRPVSFEEFLARIKALTRR- 118 Query: 120 KVSNNRAETGPIRVF-SDGRDPEVQ---GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ T I F D E+Q GE + +E IL L + V K I Sbjct: 119 -KGEFKSSTVSIGNFLLDKNSCEIQNSSGESMKISLKELLILTLLFEFPHQVVKKELIIE 177 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G + A E N VE +IS +RKK+ + + R +GYS++ Sbjct: 178 KIWG-GNSAAEYNNVEVYISFIRKKMEQLNVNARIRTARGIGYSLE 222 >gi|325067651|ref|ZP_08126324.1| two-component system response regulator [Actinomyces oris K20] gi|326772054|ref|ZP_08231339.1| DNA-binding response regulator [Actinomyces viscosus C505] gi|326638187|gb|EGE39088.1| DNA-binding response regulator [Actinomyces viscosus C505] Length = 226 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 95/222 (42%), Gaps = 24/222 (10%) Query: 18 LFGDDGVSLEGFNS--LEFEEWLQSSAREDVSAIEAF-----------LIGKGEKVLELP 64 L DD SL LE E + + + A++AF L+ G +E+ Sbjct: 6 LVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAFHEVNPDLVLLDLMLPGLDGVEIC 65 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SN 123 R+IR+ S VP+I ++ Q + ++G DD V KP +E+LARV+ RR + Sbjct: 66 RLIRSESDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNPGAA 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 G + + G + V L E +L L + K + ++ S ++G + Sbjct: 126 EHVRAGDLDIDVAGHQVKRGESVISLTPLEFELLVTLARSPWKVFTREELLSQVWG-YQH 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220 + +V H+ +LR K+ DP V + R +GY + Sbjct: 185 PADTRLVNVHVQRLRAKIEK----DPERPSIVVTVRGVGYRV 222 >gi|289551804|ref|YP_003472708.1| predicted transcriptional regulator [Staphylococcus lugdunensis HKU09-01] gi|289181335|gb|ADC88580.1| predicted transcriptional regulator [Staphylococcus lugdunensis HKU09-01] Length = 223 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 24/207 (11%) Query: 14 GYIALFGDDGVSLEGFNSLEFEEW-----LQSSAREDVSAIEA-----FLIG------KG 57 GY AL +D + + SL + L S +E + +E L+ G Sbjct: 2 GYHALIIEDDIDIAHILSLTLTKMHIKTTLNFSGQEAIETLEKDQFDLILLDLMLPEVSG 61 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E+VL I+AH+ ++ IS ++ + SG DD + KP +E+ AR+ R Sbjct: 62 EEVLSY---IKAHANSRVVVISAKTDVEEKVRLLSSGADDYLTKPFDTKELAARIDVQLR 118 Query: 118 RLKVSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 L+ + + R + R +V+ +V + E IL M + ++K +I+ Sbjct: 119 NLQQMPRQGDILTWRNLTIDKQTRKVQVKNQVLNVTNTEYDILCLFMLTPEQPISKQKIY 178 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 I G++ ++N V HIS +RKKL Sbjct: 179 ENIQGIY--LGDDNTVNVHISNIRKKL 203 >gi|239930478|ref|ZP_04687431.1| response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438839|ref|ZP_06578229.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341734|gb|EFE68690.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 223 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 5/144 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 59 EVCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGE 118 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 119 PEEAAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G D + ++ H+ +LR K+ Sbjct: 179 WG-ADYVGDTKTLDVHVKRLRAKI 201 >gi|229028450|ref|ZP_04184572.1| Two-component response regulator [Bacillus cereus AH1271] gi|228732899|gb|EEL83759.1| Two-component response regulator [Bacillus cereus AH1271] Length = 225 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQHAQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDHHLKTVYGVGYRW 220 >gi|218658341|ref|ZP_03514271.1| phosphate regulon, two-component response regulator protein [Rhizobium etli IE4771] Length = 222 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 3/152 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 ++P+I ++ + +G DD V KP E++ARV A+ RR + V ++ + G Sbjct: 71 RLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRRARPEVLSSVLKCG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I + + + L E R+LE+LM++ G+ +++Q+ ++G D V+E Sbjct: 131 DIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGVWG-HDIYVDERT 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V+ H+ +LRK L D + + R GYS++ Sbjct: 190 VDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 221 >gi|251797032|ref|YP_003011763.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544658|gb|ACT01677.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 216 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 100/202 (49%), Gaps = 20/202 (9%) Query: 27 EGFNSL---EFEEWLQSSAREDVS-AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82 EGFN L + EE L+ V A+ +++ K V E+ + I+ S+ ++ ++ Sbjct: 23 EGFNVLTAGDGEEALEMFYEHQVDLAVLDWMMPKVSGV-EVCKEIKKVSRTKVLLLTAKG 81 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNNRAETGPIRVFSDGRD 139 + L ++G DD V KP R ++AR + +L+ + + +++ DG D Sbjct: 82 EPEDELYALNAGADDYVRKPFDPRVLIARACKLLNWASQLRSGDLVVDMEAQKIYRDGSD 141 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 + + F L ++YL+ N+G+ V + + ++G FD ++ V++HI + Sbjct: 142 VQATSKEFQL-------MKYLIQNKGQIVPRKMLLDQVWG-FDYYGDDRTVDTHI----R 189 Query: 200 KLRNKLGFDPVDSKRFLGYSID 221 +LR K+G + + R LGYS++ Sbjct: 190 RLREKIGETRIKTFRGLGYSLE 211 >gi|163761469|ref|ZP_02168542.1| two component transcriptional regulator, winged helix family protein [Hoeflea phototrophica DFL-43] gi|162281313|gb|EDQ31611.1| two component transcriptional regulator, winged helix family protein [Hoeflea phototrophica DFL-43] Length = 226 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 6/188 (3%) Query: 35 EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94 E W +AI + + + L R A P++ ++ + ++ DSG Sbjct: 38 EAWFLGDTETYAAAILDLGLPGMDGLAVLKRWRAAGRDFPVLVLTARGTWSERVEGIDSG 97 Query: 95 VDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153 DD + KP E+LAR+ AI RR ++N G I + + V G L +E Sbjct: 98 ADDYLPKPFRMEEMLARLRAIIRRSGGLANPVVSVGDIELDTRQMRLSVAGVPVSLSPQE 157 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 R++ YLM N+G+ V + ++ + + E E N VE + ++R+KL L + ++ Sbjct: 158 YRLVAYLMLNKGRVVPQQELSEHLQSVHFER-ESNAVEVLVGRVRRKLPANL----ITTR 212 Query: 214 RFLGYSID 221 R GY ++ Sbjct: 213 RGFGYIVE 220 >gi|149912687|ref|ZP_01901221.1| DNA-binding response regulator [Roseobacter sp. AzwK-3b] gi|149813093|gb|EDM72919.1| DNA-binding response regulator [Roseobacter sp. AzwK-3b] Length = 250 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 108/241 (44%), Gaps = 36/241 (14%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV- 60 +LI+D A V D F G+ EG+ +W+++ R ++A E F G + Sbjct: 3 ILLIEDDARVAD-----FVMRGLQAEGYGV----QWVRT-GRAGLAAAETFSRGCASQQS 52 Query: 61 ---------------LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 L L +++R VP++ +S +D G DD + KP Sbjct: 53 AAVVILDVLLPELDGLTLCQMLRQRGHHVPVLMLSAMGESHERVDGLRRGADDYLTKPFD 112 Query: 105 HREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMA 162 E+LAR+ A+ RR + T + D + P ++ G L RE ++E L+A Sbjct: 113 FDELLARIEALMRRGRTPAAAKSTSIGTITLDRQLPGLRSAGIETILSAREMALMELLVA 172 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP---VDSKRFLGYS 219 G V++ +I S ++ D N+V+ ++S+LR+K+ + DP + + R LGY Sbjct: 173 ANGATVSRERILSRVWQ-ADRDPLTNIVDVYVSRLRRKI---VRLDPDVAITAVRGLGYR 228 Query: 220 I 220 I Sbjct: 229 I 229 >gi|116511653|ref|YP_808869.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|116107307|gb|ABJ72447.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] Length = 234 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/210 (24%), Positives = 107/210 (50%), Gaps = 16/210 (7%) Query: 13 DGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71 +GY DG+S L+ F E +E+L DV ++ ++I K + + L R+ + + Sbjct: 37 EGYNVFSAADGMSGLKIFE--EKQEYL------DVVLLD-WMIPKLDGLEVLRRMKKMTN 87 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 +VP+I ++ + + D+G DD + KP + E++AR+ I+R+ G + Sbjct: 88 KVPVIFVTARDYVGDKVAGLDAGADDYLTKPFNIEELMARLRVIFRK-NTQPAIYSYGTV 146 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + E Q + L +RE +L +L ++G+ +++ I ++G+ + + N V+ Sbjct: 147 SLNPGEHTVEYQEKATSLTQREFALLLFLFEHQGEIISRDDILEEVWGM-NFGGQLNTVD 205 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++ LRKKL + +++ R LGY ++ Sbjct: 206 TYVRYLRKKLDKNM----IETIRGLGYRLN 231 >gi|327404293|ref|YP_004345131.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327319801|gb|AEA44293.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 10/133 (7%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAETGPIRVFSDGRDPEVQGEVF 147 F++G DD + KPI R ++++V A+ RR N +T I V + + E Sbjct: 99 FEAGADDYITKPIRPRLLVSKVEALLRRAGRMNGGEPEIKTSSITVNREKFLVYMNEEEI 158 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLG 206 LP++E ++E L + GK + QI + ++G DE V E ++ HI +KLR KLG Sbjct: 159 QLPKKEFELIELLASRPGKVFTREQILTTVWG--DETIVGERTIDVHI----RKLREKLG 212 Query: 207 FDPVDSKRFLGYS 219 + + + +GY+ Sbjct: 213 ESYIRTIKGVGYT 225 >gi|323496680|ref|ZP_08101731.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326] gi|323318262|gb|EGA71222.1| DNA-binding response regulator [Vibrio sinaloensis DSM 21326] Length = 219 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 12/153 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P+I +S +L ++ ++G DD KP E++AR+ A RR S N + I Sbjct: 73 TPVIILSARDTLTQRVEGLNAGADDYQTKPFEMVELIARIRAQLRR--ASGNASPVIQIG 130 Query: 133 VFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 S D R +V QG+ L E +++ Y M N K +++T++ IY FD + N Sbjct: 131 NLSLDTRTSKVMWQGQAISLTALEFKVVAYFMHNPEKVISRTELVEHIYKQDFDR--DSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E I ++RKK+ K+ + + R LGY ++ Sbjct: 189 TIEVFIGRIRKKIAPKV----IKTVRGLGYQLN 217 >gi|313682592|ref|YP_004060330.1| two component transcriptional regulator, winged helix family [Sulfuricurvum kujiense DSM 16994] gi|313155452|gb|ADR34130.1| two component transcriptional regulator, winged helix family [Sulfuricurvum kujiense DSM 16994] Length = 223 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 9/152 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G ++ ++I++ +P+I S + + +D G DD ++KP RE++ R+ Sbjct: 56 LMLPGMDGFDVAKMIKSQLDIPIIISSARTDIGNKIYGYDLGADDYLDKPYEPRELVLRI 115 Query: 113 AAIYRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVA 169 A+ RR N + F+ D + V E +P L R E I L+ NRGK ++ Sbjct: 116 EAVLRRYGRKNELV----VSDFTIDETNKTVMMEGYPIDLTRIEFDIFILLIKNRGKNLS 171 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + QI ++ GL DE ++ V+ HIS +R K+ Sbjct: 172 RDQIIGSL-GLEDE-MKHRTVDMHISNIRLKI 201 >gi|326790543|ref|YP_004308364.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541307|gb|ADZ83166.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 228 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 7/145 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +R S V + I+ +L + +D FD G D+ + KPI RE++ARV A+ R + Sbjct: 61 EICAEMRQVSNVHIFMITAKGTLDSKIDGFDRGADEYLVKPISPREVVARVKALDTRKQR 120 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N+ + G ++F R ++ E L E +L L + G+ ++ Q+ A+ Sbjct: 121 EENKEMLVFDKGHFKIFLQERIVQINNEEITLTPNEFDLLYELASAPGRVFSRDQLIEAV 180 Query: 178 YGL-FDEAVEENVVESHISKLRKKL 201 G+ FD + ++ HI LRKK+ Sbjct: 181 MGIDFDGF--DRTIDVHIKNLRKKI 203 >gi|282863427|ref|ZP_06272486.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282561762|gb|EFB67305.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 246 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 20/207 (9%) Query: 31 SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78 +L +E W SA + A+ A ++ + + L R+ R VP++ + Sbjct: 39 ALRYEGWEVRSAGDGAEALRAARDFRPDAVILDVMLPDMDGLTVLGRLRREAPDVPVLFL 98 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134 + +++ + +G DD V KP E++AR+ + RR + R+E+ G + + Sbjct: 99 TARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRRSGTAVARSESTLVVGDLVLD 158 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D + + L E +L +LM N + ++K QI ++ +D + NVVE +I Sbjct: 159 EDSHEVSRGDDSIHLTATEFELLRFLMRNPRRVLSKAQILDRVWN-YDFGGQANVVELYI 217 Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220 S LRKK+ G P + ++R GY I Sbjct: 218 SYLRKKI--DAGRSPMIHTRRGAGYLI 242 >gi|323530311|ref|YP_004232463.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323387313|gb|ADX59403.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 336 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 5/141 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--- 121 R A + PLI + + FD+G DDVV P+ RE++ RV R+++ Sbjct: 66 RACYADRRAPLIVVGAGHDREAIARLFDAGADDVVLSPVDAREVMLRVHLALLRVQLQSA 125 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S++ E G R+ V + L RE I L + RG+ V++ QI A++ Sbjct: 126 DSSDTLECGAYRLDRRTCTVHVDSQAVRLTPREFAIAWLLFSRRGEYVSRRQIAGAVWSR 185 Query: 181 FDEAVEENVVESHISKLRKKL 201 ++ + +E HI KLRKKL Sbjct: 186 SEDIIGRT-LEQHIYKLRKKL 205 >gi|259501700|ref|ZP_05744602.1| DNA-binding response regulator [Lactobacillus iners DSM 13335] gi|309805665|ref|ZP_07699706.1| putative response regulator protein GraR [Lactobacillus iners LactinV 09V1-c] gi|315653765|ref|ZP_07906685.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195] gi|325911747|ref|ZP_08174154.1| putative response regulator protein GraR [Lactobacillus iners UPII 143-D] gi|259166985|gb|EEW51480.1| DNA-binding response regulator [Lactobacillus iners DSM 13335] gi|308165025|gb|EFO67267.1| putative response regulator protein GraR [Lactobacillus iners LactinV 09V1-c] gi|315489127|gb|EFU78769.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195] gi|325476513|gb|EGC79672.1| putative response regulator protein GraR [Lactobacillus iners UPII 143-D] Length = 222 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 6/156 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S VP+I I+ + + G D+ + KPI +A++ A+ RR KV + Sbjct: 66 IRQISHVPIIFITSHTESGDIVRAMQMGADEYITKPIDITVTIAKIQAVLRRTYDYKVGS 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G +++ + E + V L R E ILE L N ++AK + D Sbjct: 126 DSIMYGDLKLNLSVANLEGKNFVLELTRTELLILEILF-NFKNKIAKREAIINYCWQGDA 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +++N + +I++LRKKL+ +G+D + +K+ +GY Sbjct: 185 FIDDNTLAVNIARLRKKLKT-VGYDELIQTKKGIGY 219 >gi|154499881|ref|ZP_02037919.1| hypothetical protein BACCAP_03538 [Bacteroides capillosus ATCC 29799] gi|150271479|gb|EDM98736.1| hypothetical protein BACCAP_03538 [Bacteroides capillosus ATCC 29799] Length = 225 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 89/184 (48%), Gaps = 5/184 (2%) Query: 41 SAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 +++ DV ++ L G G +V+ R+ AH+ P++ ++ + D G DD + Sbjct: 42 TSQYDVIVLDVMLPGLNGFEVVR--RLRSAHNSTPVLMLTAKDETADKVTGLDCGADDYM 99 Query: 100 NKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 KP E++AR+ A+ RR +V + + R + L +E +++ Sbjct: 100 TKPFDPEELMARIRALTRRQGEVLGETMSVADLTLTLSTRSLSRGEKSVRLGFKEFEVMK 159 Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L+AN V K I + ++GL +A E+N VE ++S LRKKL + + R +GY Sbjct: 160 LLLANSSAVVPKDDIITRVWGLESDA-EDNNVEVYVSFLRKKLAFLDSVVQIRTMRKVGY 218 Query: 219 SIDW 222 +++ Sbjct: 219 FLEY 222 >gi|86356934|ref|YP_468826.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86281036|gb|ABC90099.1| two-component response regulator protein [Rhizobium etli CFN 42] Length = 251 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 5/156 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R P++ +S + + +G DD + KP E+LARV + RR Sbjct: 94 RKGIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKGTPEQDVV 153 Query: 128 TGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 + D EV+ G+ PL RE R+LEYLM N G+ V +T + ++ FD Sbjct: 154 YRVADLELDRLSHEVRRGGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP- 212 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ H+S+LR K+ + + R GY I Sbjct: 213 -QTNVIDVHVSRLRSKIEKDFSQPLLKTIRGAGYMI 247 >gi|328914028|gb|AEB65624.1| two-component response regulator YxdJ [Bacillus amyloliquefaciens LL3] Length = 229 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 19/200 (9%) Query: 39 QSSAREDVSAI-EAFLIGKGEKVL---ELP--------RIIRAHSQVPLIGISDYPSLQT 86 Q+ A D +A+ + FL K + VL LP R IR HS P+I IS Sbjct: 27 QTVAAADFTAVLDVFLQEKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISARSGEMD 86 Query: 87 TLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETGPIRVFSDGRDP 140 + ++G DD + KP + +LA++ + RR K E +++F + + Sbjct: 87 QVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVLEYAGVQLFVERFEL 146 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 Q E L ++E ++LE L+ K + ++ + D V++N + +I++LRKK Sbjct: 147 RFQDEKSELSKKESKLLEVLLERGEKVTGRDRLMEKTWDT-DIFVDDNTLNVYITRLRKK 205 Query: 201 LRNKLGFDPVDSKRFLGYSI 220 LR ++S R +GY + Sbjct: 206 LRELNAPVSIESVRGVGYQL 225 >gi|307545687|ref|YP_003898166.1| transcriptional regulator [Halomonas elongata DSM 2581] gi|307217711|emb|CBV42981.1| two component transcriptional regulator, winged helix family [Halomonas elongata DSM 2581] Length = 241 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 94/201 (46%), Gaps = 21/201 (10%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L + GY AL +D +L L ++ R D+ ++ L G+ + R +R Sbjct: 25 LTRHGYRALMAEDAEALRA---------LLATERPDLLVVDLML--PGDDGFAICREVRR 73 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 S+VP+I ++ P + + G DD + KP + RE+LARV A+ RR + + A +G Sbjct: 74 DSEVPIIMLTASPDETDRILGLELGADDYLGKPFNPRELLARVKAVLRRCRPRGDSAGSG 133 Query: 130 PIRV--FSDGRDPEVQGEVF-------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R+ F D R V E+ L + +L+ + + + +++ +F G Sbjct: 134 MARIVAFGDWRLDRVTRELIDERGMRSALSGADFSLLQVFLEHAEQVLSREALFDLTRGR 193 Query: 181 FDEAVEENVVESHISKLRKKL 201 ++ + ++ H+ +LR++L Sbjct: 194 PAPPLDRS-IDVHVCRLRQRL 213 >gi|302191092|ref|ZP_07267346.1| two component transcriptional regulator, winged helix family protein [Lactobacillus iners AB-1] Length = 228 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 6/156 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S VP+I I+ + + G D+ + KPI +A++ A+ RR KV + Sbjct: 72 IRQISHVPIIFITSHTESGDIVRAMQMGADEYITKPIDITVTIAKIQAVLRRTYDYKVGS 131 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G +++ + E + V L R E ILE L N ++AK + D Sbjct: 132 DSIMYGDLKLNLSVANLEGKNFVLELTRTELLILEILF-NFKNKIAKREAIINYCWQGDA 190 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +++N + +I++LRKKL+ +G+D + +K+ +GY Sbjct: 191 FIDDNTLAVNIARLRKKLKT-VGYDELIQTKKGIGY 225 >gi|295090183|emb|CBK76290.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 230 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 6/147 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + IR Q P+I ++ + G DD + KP E++ARV A RR K Sbjct: 62 FELCQKIREKYQYPVIMLTAKGEGIDKITGLTLGADDYITKPFLPLEMVARVKAQLRRYK 121 Query: 121 VSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ +T + +S + + G+ L E IL L +G+ V+ ++F Sbjct: 122 HYNSGTQTDDVITYSGLVINTKTHECTLNGKALSLTPTEFSILRILCQKKGEVVSSEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 I+G + N + HI LRKK+ Sbjct: 182 HEIWGDEYFSKSNNTITVHIRHLRKKM 208 >gi|291533552|emb|CBL06665.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Megamonas hypermegale ART12/1] Length = 223 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 75/144 (52%), Gaps = 6/144 (4%) Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 +E +IIR + P+I ++ + + D+G DD + KP E+LAR+ ++ RR Sbjct: 60 IEALKIIRQKGNLSPVIMLTAKSEIDDRITGLDAGADDYLMKPFSVGELLARIRSLTRRN 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + S G + + + ++ + + L +E ++++ M N K ++ IFSAI+ Sbjct: 120 TQFSPLTLSAGSVHLNIEEQNLSCKNSI-SLNHKETKLMKLFMTNMDKSLSTNHIFSAIW 178 Query: 179 GLFDEA-VEENVVESHISKLRKKL 201 DE +EN+V +IS LR+KL Sbjct: 179 A--DEIDADENIVWIYISYLREKL 200 >gi|170755580|ref|YP_001780537.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169120792|gb|ACA44628.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 223 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 99/214 (46%), Gaps = 15/214 (7%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+GY ++ DG + L RE + I + ++ L ++IR Sbjct: 20 VLNKNGYKSIEAKDG-----------DSALDILYREYIDLIISDIMMPNMDGYTLTKLIR 68 Query: 69 -AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 +++ VP++ I+ + + F G DD + KPI E++ RV A+ RR ++ N R Sbjct: 69 ESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRSQIINERKI 128 Query: 128 TGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 F D + + LP++E ++ L++ K + Q+ I+G+ E + Sbjct: 129 VISETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIWGIESET-D 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+ HI++LR + ++ F+ + + R LGY + Sbjct: 188 PRTVDVHINRLRDRFKDNKDFNII-TIRGLGYKV 220 >gi|157363849|ref|YP_001470616.1| two component transcriptional regulator [Thermotoga lettingae TMO] gi|157314453|gb|ABV33552.1| two component transcriptional regulator, winged helix family [Thermotoga lettingae TMO] Length = 263 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 18/200 (9%) Query: 27 EGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA---HSQVPLIGISD 80 EG++ L + EE L+ E V ++ G EL R +R+ + P++ +S Sbjct: 50 EGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGFELVRQLRSMEKYRNTPVVFLSA 109 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP 140 + + G DD + KP RE++AR+ A++RR+++S E P ++ + G + Sbjct: 110 KGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRRIQLSAQEREERPKKIVAKGLEI 169 Query: 141 EVQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 +V+ + L E +L +L N GK ++ + ++G +D + V+ H Sbjct: 170 DVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRDVLLDKLWG-YDYYGDTRTVDVH 228 Query: 194 ISKLRKKLRNKLGFDPVDSK 213 I +LR K+ DP + K Sbjct: 229 IRRLRTKIEE----DPSNPK 244 >gi|153853493|ref|ZP_01994873.1| hypothetical protein DORLON_00862 [Dorea longicatena DSM 13814] gi|149753648|gb|EDM63579.1| hypothetical protein DORLON_00862 [Dorea longicatena DSM 13814] Length = 220 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 3/158 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IR P++ ++ + ++ G DD ++KP E+ AR+ A RR Sbjct: 61 ELCKRIRILVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARINAHLRREHR 120 Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ R G + + + V + L + E I E+L NRG+ +K QI A++G Sbjct: 121 EHSVRMVLGRVCIQISQKKLLVDDKELLLTKAEYEICEFLAKNRGQVFSKEQILEAVFG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD ++ + +HI +R K + + P+ + +GY Sbjct: 180 FDNESNDSTIITHIKNIRAKFAD-YDYTPIKTVWGIGY 216 >gi|329905059|ref|ZP_08273989.1| Phosphate regulon transcriptional regulatory protein PhoB [Oxalobacteraceae bacterium IMCC9480] gi|327547769|gb|EGF32543.1| Phosphate regulon transcriptional regulatory protein PhoB [Oxalobacteraceae bacterium IMCC9480] Length = 229 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 82/167 (49%), Gaps = 7/167 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G ++L R R +P+I ++ + + D+G DD V KP RE+ AR+ A+ Sbjct: 64 GLRLLSRIRADRQLQAIPVIMLTAKTMEEDKIAGLDNGADDYVTKPFSPRELTARIKALL 123 Query: 117 RRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + ++ GP+ + + + + E ++L++ +A+ + ++TQ+ Sbjct: 124 RRKSPEHAQSMMRAGPVTLDPISCSVSLSDQKIEIGHAEFKLLKFFLAHPDRVFSRTQLL 183 Query: 175 SAIYGLFDEAV-EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D AV EE V+ H+ +LRK L+ + + R +GY + Sbjct: 184 DKVWG--DHAVIEERTVDVHVLRLRKALKEAEHL--IRTVRSVGYML 226 >gi|315646998|ref|ZP_07900112.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277650|gb|EFU40975.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 231 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 6/141 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S +P+I +S + +G DD V KP H E++ARV A RR + R Sbjct: 69 IRERSAIPIIMLSAKVESLDKITGLSTGADDYVTKPFHPVELMARVKAQLRRQNFLSLRE 128 Query: 127 E------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E G + + +V+G L E ILE L ANRG+ + ++I ++ Sbjct: 129 EEPSEIHIGDLSIHKKQHLVKVRGAAVSLTPIEFSILELLAANRGQIFSVSKIHECVWKE 188 Query: 181 FDEAVEENVVESHISKLRKKL 201 +N V HI +R+K+ Sbjct: 189 QTPFFSDNTVMVHIRNIREKI 209 >gi|315647169|ref|ZP_07900282.1| two-component response regulator [Paenibacillus vortex V453] gi|315277371|gb|EFU40700.1| two-component response regulator [Paenibacillus vortex V453] Length = 231 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 67/212 (31%), Positives = 100/212 (47%), Gaps = 32/212 (15%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS-AIEAFLIGKGEKVLELPRIIR 68 L K+GY L DG +E +Q++ V AI ++ K + E+ R IR Sbjct: 23 LKKEGYDVLKAADG-----------QEAVQAAQTHSVDLAILDIMMPKLDG-YEVIRQIR 70 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRA- 126 +P+I +S S + G DD + KP + E++ARV A RR +++S Sbjct: 71 EQHHMPIIFLSAKTSDLDKIAGLVRGADDYMTKPFNPMELIARVNAHLRRYMQMSQPTTS 130 Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ-IFSAIYGL 180 E G + ++ D R + GE L +E IL +L+A+ K+V T+ IF ++G Sbjct: 131 GKPALEAGGVIIYPDQRIVTLYGETIELTPKEFDIL-HLLASYPKKVFSTENIFQHVWG- 188 Query: 181 FDEAVEE--NVVESHISKLRKKL-----RNKL 205 EA E N V HI LRKKL +NKL Sbjct: 189 --EAYFETSNTVMVHIRTLRKKLHEDTNKNKL 218 >gi|167617621|ref|ZP_02386252.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] gi|257140513|ref|ZP_05588775.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 225 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 30/182 (16%) Query: 45 DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 DV ++ L G G +L R I + P++ +S + + +G DD + KP Sbjct: 47 DVITLDRMLPGVDGLTILTTMRSIGVRT--PVLMLSALGDVDERVRGLRAGGDDYLTKPF 104 Query: 104 HHREILARVAAIYRRLKVSNNRAET----GPI-------RVFSDGRDPEVQGEVFPLPRR 152 E+ AR+ + RR + S ET GP+ +V+ DG E+ LP Sbjct: 105 DTEEMTARLEVLLRRSQASPAPFETTLAVGPLTLDLISRKVYRDG------AEIALLPT- 157 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 E R+LE++M + G+ + + +F A++G FD N+++ H+ +LRKK+ DP D Sbjct: 158 EYRVLEFMMRHAGQTITRMMLFEAVWGYHFDPGT--NLIDVHMGRLRKKI------DPPD 209 Query: 212 SK 213 + Sbjct: 210 AT 211 >gi|78484886|ref|YP_390811.1| two component transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363172|gb|ABB41137.1| two component transcriptional regulator, winged helix family [Thiomicrospira crunogena XCL-2] Length = 230 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 7/164 (4%) Query: 61 LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 + L + IR + Q P+I ++ + F+SG DD V KP R ++ARV A+ R Sbjct: 63 ISLAQRIRQNDQTATTPIIMLTARGEENDQVQGFESGADDYVVKPFSPRALVARVKALLR 122 Query: 118 RL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R K + + + GP+++ V E L E +++++ M + + + Q+ Sbjct: 123 RQSPEKSTLDLIKIGPLKLDLSSYRFTVNDEEVKLGPTEFKLMQFFMTHSNRVYTRVQLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G + VEE V+ HI +LRK L D + + R GY Sbjct: 183 DQVWG-ENVVVEERTVDVHIRRLRKLLDPVGAADYIQTVRGAGY 225 >gi|99078210|ref|YP_611468.1| two component transcriptional regulator [Ruegeria sp. TM1040] gi|99035348|gb|ABF62206.1| two component transcriptional regulator, winged helix family [Ruegeria sp. TM1040] Length = 244 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 105/229 (45%), Gaps = 15/229 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++DD A V++ AL + G +E L D++ I+ L +GE Sbjct: 13 VIAIVDDDAQVRETLSALMHESGFESVCCPDIETFHALGDPPPVDLALIDLRL--RGESG 70 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L +R ++P++ ++ + ++G DD + KP + RE++AR+ A+ RR Sbjct: 71 LTLAIHLRERHEIPIVMLTGVGDEIDKIIGLETGADDYLIKPFNPRELVARIRAVLRRYG 130 Query: 121 VSNNRAETGPIRVFSDG---------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ R T R + G R + GE PL E R+LE+L N + V + Sbjct: 131 HASARTVTSGKRQITFGEKRIDLDARRLLDSAGEEVPLTNAEYRLLEFLARNPERVVPRE 190 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGY 218 ++ A+ G + + V+ I +LR+K+ + PV ++R GY Sbjct: 191 ELLEAL-GADTQRYVDRTVDVLILRLRRKI-EPVPAKPVHLQTRRARGY 237 >gi|327389463|gb|EGE87808.1| response regulator [Streptococcus pneumoniae GA04375] Length = 214 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 11/153 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ + IR S VP++ +S S + + G DD V KP +RE+ ARV A+ RR Sbjct: 41 LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 100 Query: 119 -LKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + V A++ P + + D + GE L RE +L +L ++ G+ + + Sbjct: 101 PMPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITR 160 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ + +LR+K+ + Sbjct: 161 EHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 192 >gi|297623818|ref|YP_003705252.1| winged helix family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164998|gb|ADI14709.1| two component transcriptional regulator, winged helix family [Truepera radiovictrix DSM 17093] Length = 225 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 11/165 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R S P+I ++ S+ + DSG DD + KP E+LARV A RR+ Sbjct: 64 LEVARRVRKTSNTPIIILTAKDSVDDKVLGLDSGADDYLVKPFSIEELLARVRAHLRRV- 122 Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N A TG +RV DGR+ G L +E +LE + GK + +I Sbjct: 123 ---NPAVTGEVRVADLVMNLDGREVFRDGRRIELSAKEFELLELFARSPGKVFNRFEIEE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + NVV+ ++ LR+KL + + + R +GY + Sbjct: 180 KVWPEYTGG--SNVVDVYVGYLRRKLEHDGERRLIHTVRGVGYVL 222 >gi|255525895|ref|ZP_05392822.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255510389|gb|EET86702.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 231 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 7/141 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 IR S VP++ ++ + +G DD + KP + E +ARV ++ RR Sbjct: 68 IRKKSSVPILMLTSKNDNGCKVRGLRAGADDYLTKPFNIDEFIARVISLIRRYTRFNPNG 127 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V ++ + + + D R + E LP +E IL Y N+GK + K QI+ ++G Sbjct: 128 VQASKLDYDGLIIDLDSRTIMIHNETLELPPKEFDILLYCAKNQGKILTKKQIYEEVWG- 186 Query: 181 FDEAVEENVVESHISKLRKKL 201 A +++ + + IS++RKK+ Sbjct: 187 EPYAYDDSNIMALISRIRKKI 207 >gi|126652912|ref|ZP_01725055.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905] gi|126590332|gb|EAZ84453.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905] Length = 229 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 10/167 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L RI SQ P+I ++ ++ + D G +D V KP E+LAR I L+ S Sbjct: 65 LKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLAR---IRNALRFS 121 Query: 123 NNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + T G + + R+ G+ L RE +L YLM + + + + QI Sbjct: 122 QKASPTKVGVSFGQLSINEQTREVIYYGKEIQLTPREYDLLLYLMKHPKQVLTREQILET 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++G FD + NVV+ +I +R+KL + + R +GY + N Sbjct: 182 VWG-FDYYGDTNVVDVYIRYVRQKLEIANVTPIIQTVRGVGYVLKEN 227 >gi|91787344|ref|YP_548296.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91696569|gb|ABE43398.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 226 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 88/164 (53%), Gaps = 5/164 (3%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +RA + +P++ ++ SL ++ + G DD + KP E+ AR+ A+ RR + Sbjct: 61 EILRRLRAQDKRLPVLILTARDSLADRVNALNEGADDFLAKPFALAELEARLTALVRRAR 120 Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + R GP+ + R + E PL RE +L+ L+ G+ +++ Q+ ++ Sbjct: 121 GSEHPRFACGPLLFDTVSRQFTLGSENLPLSPREHALLKALIQRSGEPLSRQQVMDRVFS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +E V+ +V++ + +LRK+L + G + + R LGY ++ + Sbjct: 181 -DEEDVQPSVIDVLVHRLRKRLDHS-GVR-IQTYRGLGYVLELD 221 >gi|329903638|ref|ZP_08273573.1| Response regulator receiver:Transcriptional regulatory protein [Oxalobacteraceae bacterium IMCC9480] gi|327548260|gb|EGF32956.1| Response regulator receiver:Transcriptional regulatory protein [Oxalobacteraceae bacterium IMCC9480] Length = 221 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/170 (31%), Positives = 81/170 (47%), Gaps = 8/170 (4%) Query: 57 GEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ LE+ IRA + VPL+ I+ L + D G DD + KP E+LAR+ A+ Sbjct: 56 GKDGLEVLTSIRAIGNPVPLLIITARDGLDDRVRGLDGGADDYLLKPFEIAELLARMRAV 115 Query: 116 YRRLKVSNNRA-ETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR S G + + R V GE L RE +L L+ G +++ ++ Sbjct: 116 LRRKGGSAAPVLGNGIVSLDPATRGATVNDGESVQLSNREFGLLHALLTRPGAILSRREL 175 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +YG + E VE N VE I LR+ KLG D + + R +G+ + N Sbjct: 176 EDRLYG-WGEEVESNAVEFLIHALRR----KLGSDVIKNVRGVGWMVSKN 220 >gi|325916695|ref|ZP_08178954.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325537095|gb|EGD08832.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 233 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 2/131 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 P++ ++ ++ + D G DD + KP RE AR + RR + ++ + G Sbjct: 72 STPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNRGQASEVVQIGG 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + G LP RE R+LE L+ G V K +I + ++G FD+ N + Sbjct: 132 FVFDNAAHTVTLDGTPIELPNREYRLLEILIGRLGHVVGKDEIGNGLFG-FDDDAGPNAI 190 Query: 191 ESHISKLRKKL 201 E ++ +LR+KL Sbjct: 191 ELYVGRLRRKL 201 >gi|323359178|ref|YP_004225574.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275549|dbj|BAJ75694.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 227 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 12/148 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ S + + G DD V KP RE+LAR+ A+ RR Sbjct: 62 EVCRQLRLSSHVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARMRAVLRRRTP 121 Query: 122 SNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + R+ S GR V G +P +E +LE LM N G+ + + Q+ Sbjct: 122 DDADLDD---RILSGGRVTLDIDRHTVAVDGNEINMPLKEFELLEVLMRNAGRVLTRGQL 178 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G D + ++ HI ++R ++ Sbjct: 179 IDRVWG-TDYFGDTKTLDVHIKRIRSRI 205 >gi|307152831|ref|YP_003888215.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] gi|306983059|gb|ADN14940.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 633 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 75/150 (50%), Gaps = 2/150 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130 Q P++ ++ S + D+G DD + KP++ ++AR+ A+ RR S ++ E G Sbjct: 67 QEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRRKNASLSSVIEWGN 126 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 +++ + + E L +E +LE + N + + I ++ + + EE V Sbjct: 127 LQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLWDIGESPGEE-TV 185 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +HI LR+KL+N DP+++ LGY + Sbjct: 186 STHIKCLRQKLKNAGVSDPIETVYGLGYRL 215 >gi|291543807|emb|CBL16916.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. 18P13] Length = 263 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 14/210 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59 + V DDR +V+ L +G++ L +N LE L++ A VS I ++ Sbjct: 27 VLVADDDRDIVR-AIATLLEQEGLTVLRAYNGLEA---LEAVAEHPVSLILIDVMMPKLD 82 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L IR +P++ +S + G DD + KP H +E+ ARV + RR Sbjct: 83 GLSAMMKIREQKNIPILILSAKSEESDKILGLSMGADDYIAKPYHPQELAARVKSSLRRY 142 Query: 119 --LKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L +++ IRV DP+ V GE L +E +I+E + N G+ + Sbjct: 143 LHLGAADSARMQKLIRVGGLEYDPDTRQLTVDGEPVRLTSKELKIMELFLRNPGRIFSAE 202 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +I+S ++ AV EN V HI +R+K+ Sbjct: 203 EIYSRVWNEDAYAV-ENTVMVHIRHIREKI 231 >gi|226939262|ref|YP_002794333.1| OmpR [Laribacter hongkongensis HLHK9] gi|226714186|gb|ACO73324.1| OmpR [Laribacter hongkongensis HLHK9] Length = 219 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 108/231 (46%), Gaps = 31/231 (13%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D L+ DG A G+ GFN ++ + A + +A ++ G Sbjct: 4 LLVEDDPLLGDGLEA-----GLRQSGFNVDWMKDGAAARAAMAAAPYDAVVLDLG----- 53 Query: 63 LPRII---------RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 LP++ R P++ ++ S++ + D+G DD + KP E++AR+ Sbjct: 54 LPKVSGLDVLGEWRRQGVDTPVLILTARDSVEDRIRGLDTGADDYLVKPFALGEVVARLR 113 Query: 114 AIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 A+ RR S+ RA E G + + + R G L +E ++LE + N+ + + Sbjct: 114 ALIRR---SHGRANPVFEHGTLVLDPNARTVLQDGRAVELTAKEFQLLELFLENKSRVLP 170 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + +YG E ++ N +E H+ LRKKL ++L + + R +GY + Sbjct: 171 RALLEEKLYGWAQE-LDSNALEVHVHHLRKKLGSQL----IRTVRGVGYQL 216 >gi|226357399|ref|YP_002787139.1| response regulator OmpR [Deinococcus deserti VCD115] gi|226319389|gb|ACO47385.1| putative response regulator, OmpR [Deinococcus deserti VCD115] Length = 219 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 3/158 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+L + +R +S P++ +S +Q + ++G DD + KP E+ AR+ A+ RR Sbjct: 61 LDLVQALRQYSSTPVLVLSARSGVQERVAGLNAGADDYLTKPFAMPELDARITALLRR-T 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + V + L E RILE +M + ++ I S +YG Sbjct: 120 AAGTGVNLGNTSLSTSSLLLTVDEKNINLTEHEARILELMMRTPERVFSRADIESHLYGW 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E N VE IS+LRKKL + + R +GY Sbjct: 180 --ETPNSNSVEVRISQLRKKLEQAASDLRIRTIRNVGY 215 >gi|261855398|ref|YP_003262681.1| transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261835867|gb|ACX95634.1| two component transcriptional regulator, winged helix family [Halothiobacillus neapolitanus c2] Length = 226 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 5/131 (3%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP--LP 150 +G DD + KP E+LAR+ A+ RR++ ++ + D +V P L Sbjct: 93 AGGDDYLTKPYAFSELLARIEALTRRMQTRDSSDTLAVADLVLDRVRHKVMRRDQPILLQ 152 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209 RE R+L+YLM + G+ V +T + ++G FD + NV++ HIS+LR K+ Sbjct: 153 PREFRLLDYLMRHAGQVVTRTMLLEQVWGYHFDP--QTNVIDVHISRLRSKIDRDFDTPL 210 Query: 210 VDSKRFLGYSI 220 + + R GY + Sbjct: 211 LHTVRGAGYVL 221 >gi|104783258|ref|YP_609756.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas entomophila L48] gi|95112245|emb|CAK16972.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas entomophila L48] Length = 224 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 19/165 (11%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118 +RA S ++ ++ + L + D G DD + KP E+LAR+ ++ RR Sbjct: 66 LRAESSTRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRNDQHLQPS 125 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 LKV++ + G R + G+ ++ + F L L LM G+ +++TQI S + Sbjct: 126 TLKVADLELDPGRHRAWRGGQRIDLTAKEFAL-------LHLLMRQSGEVLSRTQIISLV 178 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + FD + NVVE I +LR K+ + + + R +GY ++ Sbjct: 179 WDMNFD--CDTNVVEVSIRRLRAKIDDPFEDKLIHTLRGVGYVLE 221 >gi|331090954|ref|ZP_08339796.1| hypothetical protein HMPREF9477_00439 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405176|gb|EGG84712.1| hypothetical protein HMPREF9477_00439 [Lachnospiraceae bacterium 2_1_46FAA] Length = 223 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 80/157 (50%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ IS + + G DD V+KP I A++ A+ RR + S Sbjct: 67 IRKVSKVPIVFISSASDNMNIVMAINMGADDFVDKPFDLNVITAKIQALLRRTYSFQGSV 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N E + + + + + L + + +IL+ L+ N GK V++ +I ++ +E Sbjct: 127 NVIEHKGVVLNLNDASVSYEEKHLELTKNDYKILQLLLENVGKIVSREEIMVRLWE-NEE 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL D + +K+ +GY I Sbjct: 186 FIDDNTLTVNVTRLRKKLETIGVKDFIATKKRIGYII 222 >gi|291533797|emb|CBL06910.1| two component transcriptional regulator, winged helix family [Megamonas hypermegale ART12/1] Length = 230 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 14/149 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R+IR S VP+I I+ + + G DD + KP EI+AR+ AI RR+ Sbjct: 60 FEVCRVIRKTSNVPIIMITARGEDFEKIMGLEIGADDYIVKPFSPGEIMARIKAILRRI- 118 Query: 121 VSNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + +T ++VFS + +V L ++E IL L + + ++ Sbjct: 119 ----QPKTENLQVFSYDNLQINLVDYTVSINNKVLSLTKKEIEILWTLATKKDRVFSRDM 174 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + + ++G +D + V+SHI +LR KL Sbjct: 175 LLNKLWG-YDYIGDSRTVDSHIKRLRAKL 202 >gi|270292778|ref|ZP_06198989.1| DNA-binding response regulator VicR [Streptococcus sp. M143] gi|270278757|gb|EFA24603.1| DNA-binding response regulator VicR [Streptococcus sp. M143] Length = 235 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 12/154 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP+I +S S + + G DD V KP +RE+ ARV A+ RR Sbjct: 61 LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120 Query: 121 VSN-NRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 +++ + ET G + + D + GE L RE +L +L ++ G+ + Sbjct: 121 LASVDSQETDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ I +LR+K+ + Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 213 >gi|288573461|ref|ZP_06391818.1| two component transcriptional regulator, winged helix family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569202|gb|EFC90759.1| two component transcriptional regulator, winged helix family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 240 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 9/166 (5%) Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R IR+ + +P+I ++ + + + G DD + KP E++ARV ++ RR Sbjct: 66 EVCRRIRSSPESRALPIIMMTARRDERDLVQGLELGADDYIRKPFSLVELMARVKSLIRR 125 Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + G + + +G+ + +GE L E R+L L G+ V + ++ S Sbjct: 126 TQLVQTKPTVSVGDLEIDLEGQIAKFKGEEINLSLTEYRLLRTLAERPGQVVPRERLLSL 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSI 220 I+G++ + V+ HIS+LRKKL G + + R GY I Sbjct: 186 IWGVY--GGDTRTVDVHISRLRKKLAQAGGDSAPTITALRGRGYRI 229 >gi|269926540|ref|YP_003323163.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269790200|gb|ACZ42341.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 233 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 4/150 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRAETGPI 131 +P+I ++ + + + D+G DD + KP + E+LAR+ A++ RR + G + Sbjct: 79 LPIIILTAKDATEDKIAGLDAGADDYITKPFNFEELLARIRASLRRRQPQEKSIIRVGDL 138 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190 + R+ L RE +LE+L N G V+K IF ++G FD ++ + V Sbjct: 139 TLNLASREAMRGERKLDLTTREFDLLEFLARNEGHVVSKEAIFERVWGYSFD--IDSDAV 196 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +IS LR KL D + + R +GY + Sbjct: 197 KVYISYLRSKLTAGGEPDMIHTIRGIGYML 226 >gi|114765250|ref|ZP_01444382.1| DNA-binding response regulator CtrA [Pelagibaca bermudensis HTCC2601] gi|114542385|gb|EAU45413.1| DNA-binding response regulator CtrA [Roseovarius sp. HTCC2601] Length = 258 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 102 PIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160 P+ E+ +RV AI RR + G I + DGRDP+V G+ L +RE I + + Sbjct: 104 PVTGLELRSRVNAITRRFHGHAAGTLRIGDITAYFDGRDPDVGGQPMKLSQRELAIFQQI 163 Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGY 218 + V+K+ I+ A+YG+ + + V++ +I ++RKK+ + LG + + R GY Sbjct: 164 ALAAPRVVSKSVIYDAVYGMAQDQPFDKVIDVYICRIRKKIEEMSPLGDPHIRTIRGRGY 223 Query: 219 SI 220 + Sbjct: 224 KL 225 >gi|120403327|ref|YP_953156.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119956145|gb|ABM13150.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 244 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 8/181 (4%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 R D++ I+ L G +VL LP + R LI ++ +++ +D G DD + KP Sbjct: 62 RIDLALIDIGLAGVDGRVL-LPHLRRQDPTTGLILLTARSDIESKVDALRGGADDYITKP 120 Query: 103 IHHREILARVAAIYRRLKVSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160 H E++ARV A+ RR K +E G + V D L E R+L +L Sbjct: 121 FHPTEVIARVDAVLRRTK-GEEPSELGYADLTVDIDRLTVRRAQRKLALTPTELRLLVFL 179 Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYS 219 + N + V+++QI ++ ++ E +VE IS LR+K+ G +P + + R GY+ Sbjct: 180 LRNAERVVSRSQILDQVWQ-YEFRGEGLIVEKVISNLRRKVDT--GSEPLIHTVRGFGYT 236 Query: 220 I 220 + Sbjct: 237 L 237 >gi|56962036|ref|YP_173758.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56908270|dbj|BAD62797.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 224 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 79/164 (48%), Gaps = 1/164 (0%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ +L + +++ P++ ++ LQ L F G DD + KP + +LAR+ + Sbjct: 57 GQSGFDLCKSLKSKGIGPILILTSRDKLQDELHGFHLGADDYLTKPCNRDRLLARIQNLL 116 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR + G + + E L E +IL L+ +R + V+K + Sbjct: 117 RRFARQPGLVDGGDFSLDPNTYTLYKGSESLVLSANEGKILLALVQSRPEIVSKKALSEL 176 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D+ ++EN ++ ++++LRK LR D +++ R GY + Sbjct: 177 LWGT-DQFIDENAIQVNLTRLRKTLRPLNLEDQIETVRGQGYRL 219 >gi|116492482|ref|YP_804217.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116102632|gb|ABJ67775.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 228 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 21/221 (9%) Query: 18 LFGDDGVSLEGFNSLE-----FEEWLQSSAR--------EDVSAIEAFLIGKGEKVLELP 64 L +D SL F LE +E +QS+ R ED AI L+ +E+ Sbjct: 5 LIIEDEKSLARFVQLELQHEGYEVEVQSNGRTGLEAALSEDFDAILLDLMLPEINGIEVC 64 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123 R IR P+I ++ S+ + D G DD + KP E+LAR+ A+ RR+ + Sbjct: 65 RRIRREKITPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVDLETQ 124 Query: 124 ------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E I + + R EV L +RE +L LM N ++ + + + Sbjct: 125 DSTFHQTTVEFQDIVIEKENRVVRRNNEVINLTKREYELLLLLMENINVVQSRETLLNKV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +G+ D+ VE NVV+ +I LR K+ K + + R GY Sbjct: 185 WGV-DDGVETNVVDVYIRYLRNKIDVKGRPSYIQTVRGTGY 224 >gi|71275673|ref|ZP_00651958.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71897783|ref|ZP_00680009.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|170729506|ref|YP_001774939.1| response regulator receiver protein [Xylella fastidiosa M12] gi|71163564|gb|EAO13281.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71732338|gb|EAO34392.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|167964299|gb|ACA11309.1| response regulator receiver protein [Xylella fastidiosa M12] Length = 231 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 70/132 (53%), Gaps = 6/132 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ ++ +++ + + G DD ++KP RE AR + RR + N +E I Sbjct: 73 TPVLILTARDAIEDRVYTLNVGADDYLSKPFDFREFEARCRVLLRRNR--GNASEVVRIG 130 Query: 133 VF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 F + + GE LP RE R+LE L+A G+ V K +I ++++ FD+ N Sbjct: 131 GFEFDNASHRIRLHGEPIKLPNREYRLLEILIARLGQIVGKDEIGNSLFN-FDDNAGPNA 189 Query: 190 VESHISKLRKKL 201 +E ++++LR+KL Sbjct: 190 IELYVARLRRKL 201 >gi|306826555|ref|ZP_07459864.1| response regulator [Streptococcus pyogenes ATCC 10782] gi|304431282|gb|EFM34282.1| response regulator [Streptococcus pyogenes ATCC 10782] Length = 217 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 3/141 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP+I ++ T L F+ + D V KP ++ R+ + R+ Sbjct: 61 LEVLKTIRKTSDVPIIMLTALDDEYTQLVSFNHLISDYVTKPFSPLILIKRIENVL-RVS 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + G + V + QG + L ++E I++YL K V + Q+ I+G Sbjct: 120 TPDEKRQIGDLLVDETEHNVYWQGTLVKLTKKEYDIIDYLAKRHQKIVTRDQLMDDIWGY 179 Query: 181 FDEAVEENVVESHISKLRKKL 201 ++ V+++HI LRKK+ Sbjct: 180 --SELDTRVLDNHIKNLRKKM 198 >gi|326319003|ref|YP_004236675.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375839|gb|ADX48108.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 248 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 23/182 (12%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G L+L R IR Q P+I ++ L G DD V KP E++ARV A+ Sbjct: 67 GMDGLDLLRAIREDGQTPVIMVTALADDVDKLVGLRLGADDYVVKPFSPPEVVARVRAVL 126 Query: 117 RRLKV-------SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRR--ERRILEYL 160 RR++ + R G I + F+ G D G PLP E R+L L Sbjct: 127 RRVQAQPSAPARAAQRIRVGRIEIDQEAHAAFAHGDD----GRAVPLPLTLTEYRLLACL 182 Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A + +++ + + L + + V++SH+SKLR+KL+ + +++ R +GY + Sbjct: 183 AAQPRRCFSRSHLIE--HCLPESDALDRVIDSHLSKLRRKLQQAGQGELIETVRGIGYRL 240 Query: 221 DW 222 W Sbjct: 241 -W 241 >gi|187779227|ref|ZP_02995700.1| hypothetical protein CLOSPO_02822 [Clostridium sporogenes ATCC 15579] gi|187772852|gb|EDU36654.1| hypothetical protein CLOSPO_02822 [Clostridium sporogenes ATCC 15579] Length = 223 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 22/168 (13%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + R IR S VP+I ++ S L + G DD + KP + +LAR+ I +R Sbjct: 63 ICREIRKTSDVPIIIVTSRDSDVDELMSINLGADDFITKPYNTEILLARITNILKRTYGN 122 Query: 119 LKVSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 LK +N N + ++ D + L + E +IL YL+ N+G V + Sbjct: 123 LKTNNILNYRDFNLNLSNATVIYKD--------KSLELTKNEVKILSYLINNKGNIVKRD 174 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 + ++ D V+++ + +I++LRKKL+ ++G +P++++R LGY Sbjct: 175 LLMEYLWK-SDYFVDDSTLTVNINRLRKKLQ-EIGIENPIETRRGLGY 220 >gi|160931432|ref|ZP_02078828.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753] gi|156869497|gb|EDO62869.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753] Length = 223 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 98/203 (48%), Gaps = 15/203 (7%) Query: 25 SLEGFNSLEFEEWLQSSAREDVSAIEAF-LIGKGEKVLELP-----RIIRAHSQVPLIGI 78 EGF ++E + LQ+ ++ E+F LI + EL R IR S P++ + Sbjct: 22 QFEGFETVEAVDGLQAV---EICRKESFDLIIMDVMMPELDGFSAVREIRKTSSTPVLML 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNRAETGPIRVFS 135 S + F+ G+DD V KP +E++ RV+AI +R + + G + V Sbjct: 79 SARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVSAILKRSGGGEAQRDVVTYGGLTVDF 138 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 GR + G+ + +E + YL+ N+G + + ++ + ++G +D ++ +++HI Sbjct: 139 TGRLVYIDGKRVDMTPKEYDLFFYLVKNKGIALTREKLINEVWG-YDFYGDDRTLDTHIK 197 Query: 196 KLRKKLRNKLGFDPVDSKRFLGY 218 LRK L G + + R +GY Sbjct: 198 LLRKSLGEYSG--TITTLRGVGY 218 >gi|119718048|ref|YP_925013.1| response regulator receiver [Nocardioides sp. JS614] gi|119538709|gb|ABL83326.1| response regulator receiver [Nocardioides sp. JS614] Length = 228 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 72/151 (47%), Gaps = 19/151 (12%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L +IRA S VP+I I+ T + D G DD V KP ++ AR+ A+ RR Sbjct: 61 LTLIGMIRAASTVPIIVITAQDDDPTMVKALDGGADDYVVKPFGTGQVEARIRAVLRR-- 118 Query: 121 VSNNRAETG-PIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +RA T PIRV R + G L RRE +L L +G+ + K +I Sbjct: 119 --GDRALTSEPIRVGQLVIDEGARTAALAGRRLELARREFDLLLALAQRQGQVMTKREIL 176 Query: 175 SAI----YGLFDEAVEENVVESHISKLRKKL 201 + + YG D + ++ H+S LR+KL Sbjct: 177 AEVWQQAYGGGDRS-----IDVHLSWLRRKL 202 >gi|77465512|ref|YP_355015.1| two component transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77389930|gb|ABA81114.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides 2.4.1] Length = 220 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 107/224 (47%), Gaps = 14/224 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V+ DD + +D +AL G G +E E +L + D+ ++ L K + + Sbjct: 4 LVVEDDARIAQDLSVAL-GSAGFRVETAADGETAWFLGGTEGYDLIVLDLGLP-KLDGLA 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R ++P++ ++ + ++ D+G DD + KP E++AR A+ RR Sbjct: 62 VLKRWRAEGVEIPVLVLTARGTWTERVEGIDAGADDYLPKPFRIEELVARARALVRR--- 118 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S RA G + + + + G L E R+L YLM +R + V T++ + Sbjct: 119 STGRAAPLQSVGRLALDMNRMTATLDGLPLGLAPLEFRLLAYLMLHRDRVVPPTELLEHL 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 YG ++A E N +E+ +++LR+ K+G + ++R GY ++ Sbjct: 179 YG-DNDAREANALEAVVARLRR----KVGRGVIGTRRGFGYQLE 217 >gi|54022631|ref|YP_116873.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54014139|dbj|BAD55509.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 238 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 86/189 (45%), Gaps = 11/189 (5%) Query: 23 GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA----HSQVPLIGI 78 G+ L GF+ L + + + +A ++ VL+ ++ A + VP+ + Sbjct: 28 GLRLSGFHVLVARDGAAALRSVNADCPDAVVLDMNMPVLDGAGVVTALRALGNDVPICVL 87 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETGPIR 132 S S+ + +SG DD + KP E++AR+ A+ RR + GP+ Sbjct: 88 SARASVDDRISGLESGADDYLVKPFVLAELVARIKALLRRRTDAPAAAATPGAITVGPLE 147 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 V G + G L +RE +L L N G +++ ++ ++G +D A + NVV+ Sbjct: 148 VDEAGYRALLHGREIELTKREFELLSTLARNAGVVLSRERLLELVWG-YDFAADTNVVDV 206 Query: 193 HISKLRKKL 201 + LR+KL Sbjct: 207 FVGYLRRKL 215 >gi|22125369|ref|NP_668792.1| response regulator [Yersinia pestis KIM 10] gi|45442409|ref|NP_993948.1| putative response regulator [Yersinia pestis biovar Microtus str. 91001] gi|51597048|ref|YP_071239.1| two-component response regulator [Yersinia pseudotuberculosis IP 32953] gi|108808192|ref|YP_652108.1| putative two-component response regulator [Yersinia pestis Antiqua] gi|108811537|ref|YP_647304.1| two-component response regulator [Yersinia pestis Nepal516] gi|145599392|ref|YP_001163468.1| two-component response regulator [Yersinia pestis Pestoides F] gi|153946864|ref|YP_001400283.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP 31758] gi|162418219|ref|YP_001607153.1| DNA-binding response regulator [Yersinia pestis Angola] gi|166011234|ref|ZP_02232132.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. E1979001] gi|166212492|ref|ZP_02238527.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. B42003004] gi|167399427|ref|ZP_02304951.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167424627|ref|ZP_02316380.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186896131|ref|YP_001873243.1| two component transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|229895670|ref|ZP_04510841.1| putative two-component response regulator [Yersinia pestis Pestoides A] gi|229901804|ref|ZP_04516926.1| putative two-component response regulator [Yersinia pestis Nepal516] gi|270489994|ref|ZP_06207068.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294504760|ref|YP_003568822.1| response regulator [Yersinia pestis Z176003] gi|21958252|gb|AAM85043.1|AE013750_3 putative response regulator [Yersinia pestis KIM 10] gi|45437274|gb|AAS62825.1| putative response regulator [Yersinia pestis biovar Microtus str. 91001] gi|51590330|emb|CAH21967.1| putative two-component response regulator [Yersinia pseudotuberculosis IP 32953] gi|108775185|gb|ABG17704.1| two-component response regulator [Yersinia pestis Nepal516] gi|108780105|gb|ABG14163.1| putative two-component response regulator [Yersinia pestis Antiqua] gi|145211088|gb|ABP40495.1| two-component response regulator [Yersinia pestis Pestoides F] gi|152958359|gb|ABS45820.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP 31758] gi|162351034|gb|ABX84982.1| DNA-binding response regulator [Yersinia pestis Angola] gi|165989912|gb|EDR42213.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. E1979001] gi|166206423|gb|EDR50903.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. B42003004] gi|167051931|gb|EDR63339.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056509|gb|EDR66278.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699157|gb|ACC89786.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] gi|229681733|gb|EEO77827.1| putative two-component response regulator [Yersinia pestis Nepal516] gi|229701476|gb|EEO89504.1| putative two-component response regulator [Yersinia pestis Pestoides A] gi|262362822|gb|ACY59543.1| response regulator [Yersinia pestis D106004] gi|262366746|gb|ACY63303.1| response regulator [Yersinia pestis D182038] gi|270338498|gb|EFA49275.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294355219|gb|ADE65560.1| response regulator [Yersinia pestis Z176003] gi|320014434|gb|ADV98005.1| putative two-component response regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 235 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 105/225 (46%), Gaps = 29/225 (12%) Query: 1 MFVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLI 54 M +LI +D A +++G + + EG+ + E +Q+ A + D ++ + Sbjct: 1 MKILIAEDNAHIRNGLMEVLAH-----EGYRPIAAENGVQALALYRQQQPDFIILDIMMP 55 Query: 55 G-KGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 G KV R IR H Q P+I +S + + G DD ++KP E+ AR+ Sbjct: 56 ELDGYKVC---REIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARI 112 Query: 113 AAIYRRL--KVSNNRAETG----PIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRG 165 I RR KV + + G + VF + ++GE L RE IL YL ++G Sbjct: 113 KTIVRRCLRKVPESAEDAGFPFGDLMVFPN-ELCAIRGETRLELSLREVNILRYLYQHKG 171 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 + V + +F A++G +D + ++ HISKLRK + DPV Sbjct: 172 RVVTRDMLFDAVWG-YDHLPQSRTLDQHISKLRKTIE----LDPV 211 >gi|239916951|ref|YP_002956509.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281414591|ref|ZP_06246333.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239838158|gb|ACS29955.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 236 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 16/201 (7%) Query: 34 FEEWLQSSAREDVSAIEAFLIGKGEKVLELP---------RIIRAHSQVPLIGISDYPSL 84 FE ++ RE + A E F + LP R+ A P++ ++ Sbjct: 32 FEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGFTVTRRLRSAGRHFPVVFLTARDGT 91 Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV-----FSDGRD 139 + + G DD V KP E++AR+ A+ RR S + + +RV D + Sbjct: 92 EDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRR-TASLDDDDAAVLRVDDLELDDDAHE 150 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 GEV L E ++L YLM N + ++K QI ++ +D + ++VES+IS LR+ Sbjct: 151 VRRGGEVVELSPTEFKLLRYLMMNPNRVLSKAQILDHVWE-YDFNGDASIVESYISYLRR 209 Query: 200 KLRNKLGFDPVDSKRFLGYSI 220 K+ + +KR +GY + Sbjct: 210 KIDVGGHEKMIHTKRGVGYML 230 >gi|74314832|ref|YP_313251.1| DNA-binding response regulator CreB [Shigella sonnei Ss046] gi|193065660|ref|ZP_03046726.1| transcriptional regulatory protein CreB [Escherichia coli E22] gi|218556934|ref|YP_002389848.1| DNA-binding response regulator CreB [Escherichia coli IAI1] gi|256020158|ref|ZP_05434023.1| DNA-binding response regulator CreB [Shigella sp. D9] gi|260847288|ref|YP_003225066.1| DNA-binding response regulator CreB in two-component regulatory system with CreC [Escherichia coli O103:H2 str. 12009] gi|300905390|ref|ZP_07123159.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300923534|ref|ZP_07139569.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|301303503|ref|ZP_07209626.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|332281320|ref|ZP_08393733.1| catabolic regulation response regulator [Shigella sp. D9] gi|73858309|gb|AAZ91016.1| catabolic regulation response regulator [Shigella sonnei Ss046] gi|192926733|gb|EDV81361.1| transcriptional regulatory protein CreB [Escherichia coli E22] gi|218363703|emb|CAR01363.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli IAI1] gi|257762435|dbj|BAI33932.1| DNA-binding response regulator CreB in two-component regulatory system with CreC [Escherichia coli O103:H2 str. 12009] gi|300402759|gb|EFJ86297.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300420208|gb|EFK03519.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300841230|gb|EFK68990.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|315255739|gb|EFU35707.1| response regulator receiver domain protein [Escherichia coli MS 85-1] gi|320200483|gb|EFW75069.1| Two-component response regulator CreB [Escherichia coli EC4100B] gi|323166208|gb|EFZ51986.1| transcriptional regulatory protein creB [Shigella sonnei 53G] gi|323181940|gb|EFZ67352.1| transcriptional regulatory protein creB [Escherichia coli 1357] gi|324019813|gb|EGB89032.1| response regulator receiver domain protein [Escherichia coli MS 117-3] gi|332103672|gb|EGJ07018.1| catabolic regulation response regulator [Shigella sp. D9] Length = 229 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ V + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ ++ Sbjct: 125 FSSPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|296447623|ref|ZP_06889543.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296254888|gb|EFH01995.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 221 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 14/150 (9%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL+ R +A VP++ I+ +++T+D D G DD + KP +LAR+ A+ Sbjct: 59 GFDVLKAAR--KAGGSVPILIITARDGVESTVDGLDLGADDYIVKPFSLCALLARIRAVL 116 Query: 117 RRLKVSNNRAETGPIRVFSD-GRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAK 170 RR+ N +A + + V ++ DP + +F L RE +L LM G +++ Sbjct: 117 RRV---NGQAHS--LLVSNEIILDPSTRVAIFRGVKGVLTAREYSLLYTLMKRPGAILSR 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKK 200 +QI IYG + E V+ N V+ I LRKK Sbjct: 172 SQIEERIYG-WGEEVQSNAVDVLIHVLRKK 200 >gi|226939099|ref|YP_002794170.1| PhoB [Laribacter hongkongensis HLHK9] gi|226714023|gb|ACO73161.1| PhoB [Laribacter hongkongensis HLHK9] Length = 229 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/225 (24%), Positives = 104/225 (46%), Gaps = 14/225 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ G + S E + L +A D+ ++ L G+ + Sbjct: 5 ILLVEDEPAIQELIAFNLAQSGHQVLRAASAEAAQTLVKNALPDLVLLDWML--PGQSGI 62 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E R +R+ +VP+I ++ Q + ++G DD + KP RE+ AR+ A+ RR Sbjct: 63 EFARRLRSDERTREVPIIMLTARSDEQDKIAGLETGADDYITKPFSPRELQARIKAVLRR 122 Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +++++ E +R+ G+ L E R+L + M + + +++Q+ Sbjct: 123 RAPQMTDDAVEVQGLRLDPATHRVAAGGQPLDLGPTEFRLLHFFMTHPERVHSRSQLLDQ 182 Query: 177 IYG--LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 ++G +F VEE V+ HI +LR L G D V + R GY Sbjct: 183 VWGDHVF---VEERTVDVHIRRLRSALEPS-GHDALVQTVRGTGY 223 >gi|213023977|ref|ZP_03338424.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 187 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 6/163 (3%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ + +R Q +P++ ++ ++ + + G DD + KP E+ AR+ A+ RR Sbjct: 23 LEVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 82 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +F D +QG+ L RE+ +L LM R + V++ Q+F ++ Sbjct: 83 AGLVHEVQQLGELIFHDEGYFLLQGQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 142 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 L DE E+ +E +I +LRKKL+ G D + + R LGY ++ Sbjct: 143 LNDEVSPES-IELYIHRLRKKLQ---GSDVRITTLRGLGYVLE 181 >gi|212710908|ref|ZP_03319036.1| hypothetical protein PROVALCAL_01976 [Providencia alcalifaciens DSM 30120] gi|212686605|gb|EEB46133.1| hypothetical protein PROVALCAL_01976 [Providencia alcalifaciens DSM 30120] Length = 237 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 3/153 (1%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G + + R +R S VP+I ++ L + G DD V KP RE++ARV Sbjct: 65 LMLPGLDGISVCRELRQFSDVPVIMVTAKTEEIDRLLGLEIGADDYVCKPFSPREVVARV 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAK 170 I RR + S+ A ++ D +V+ ++ L E R+L++L N G ++ Sbjct: 125 KTILRRCQHSSTSANHHGTQLIIDENAFQVRYGDKLLELTPAEFRLLKFLSDNAGTVFSR 184 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 Q+ +Y V + ++SH+ LR+KL + Sbjct: 185 DQLLDILYD-DHRVVTDRTIDSHVKNLRRKLES 216 >gi|54024784|ref|YP_119026.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54016292|dbj|BAD57662.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 219 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 8/162 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R +R S VP++ ++ ++ + G DD + KP E++AR+ + RR Sbjct: 58 LQVLRQLREVSSVPVLILTARSDERSVVRGLRGGADDYLVKPPRIAELMARLETVTRRAA 117 Query: 121 VSNN--RAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V+ R E TG +RV R EV G PL ++E ++E L+ G V++ Q+ Sbjct: 118 VAAQPPRREVVTGDVRVDLVARVVEVAGSPVPLTQKEFELVEALVERPGAAVSRQQLMDR 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I+G AV + ++ H++ LR KL N+ G + + R GY Sbjct: 178 IWGDAFVAVSRS-LDVHMTGLRAKL-NRPGL--ITTIRGYGY 215 >gi|71901162|ref|ZP_00683267.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|71729084|gb|EAO31210.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] Length = 231 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 70/132 (53%), Gaps = 6/132 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ ++ +++ + + G DD ++KP RE AR + RR + N +E I Sbjct: 73 TPVLILTARDAIEDRVYTLNVGADDYLSKPFDFREFEARCRVLLRRNR--GNASEVVRIG 130 Query: 133 VF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 F + + GE LP RE R+LE L+A G+ V K +I ++++ FD+ N Sbjct: 131 GFEFDNAAHRIRLNGEPIKLPNREYRLLEILIARLGQIVGKDEIGNSLFN-FDDNAGPNA 189 Query: 190 VESHISKLRKKL 201 +E ++++LR+KL Sbjct: 190 IELYVARLRRKL 201 >gi|284047483|ref|YP_003397822.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283951704|gb|ADB46507.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 224 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 12/138 (8%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 S+VP++ ++ S Q + DSG DD + KP E+LAR+ ++ RR +N +T Sbjct: 71 SRVPVLFLTALDSTQDKVTGLDSGGDDYLVKPFEFDELLARIRSLLRR----SNAQQTAR 126 Query: 131 IR-----VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 R + D R +V G+ L +E +L+YL+ N+G +++ QI + E Sbjct: 127 TRLTLADLTLDTRTHQVTRGGQEIALTPKEFSVLDYLLRNQGTVLSREQILEHAWDFSYE 186 Query: 184 AVEENVVESHISKLRKKL 201 N+V+ +I LRKK+ Sbjct: 187 GY-SNMVDVYIKTLRKKI 203 >gi|229191306|ref|ZP_04318292.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228592111|gb|EEK49944.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] Length = 225 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 2/158 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 69 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +E V+ H+ +LR + + + + R LGY ++ N Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLELN 225 >gi|217976385|ref|YP_002360532.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] gi|217501761|gb|ACK49170.1| two component transcriptional regulator, winged helix family [Methylocella silvestris BL2] Length = 231 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 79/156 (50%), Gaps = 12/156 (7%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128 + P++ +S + + +G DD ++KP E+LARV + RR K + ET Sbjct: 76 ETPVLILSALGQVDDRVKGLRAGGDDYLSKPYAFAELLARVEILARR-KQNGTGEETVYR 134 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 G + + +G+ L RE R+LEYLM + G+ V +T + ++ FD + Sbjct: 135 VGGLELDRLAHKVAREGKEIQLQPREFRLLEYLMRHAGQVVTRTMLLENVWDYHFDP--Q 192 Query: 187 ENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 NV++ HIS+LR K+ GF+P + + R GY I Sbjct: 193 TNVIDVHISRLRSKIDK--GFEPPLLQTIRGAGYMI 226 >gi|154484219|ref|ZP_02026667.1| hypothetical protein EUBVEN_01930 [Eubacterium ventriosum ATCC 27560] gi|149734696|gb|EDM50613.1| hypothetical protein EUBVEN_01930 [Eubacterium ventriosum ATCC 27560] Length = 227 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 2/139 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNR 125 IR HSQVP+I ++ S + L+ ++G D+ + KP + +L + I R + Sbjct: 73 IREHSQVPVIMLTARESEEDQLNGLNNGADNYITKPFLMKVLLVHMGKLIQRNGNEDTDV 132 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E G +++ R + GE +E +L Y+ N + + I A++G FD Sbjct: 133 IEKGALKLEKQFRKAYINGEFVDTTPKEFDLLVYMCENEKVVLKRENILDAVWG-FDYDG 191 Query: 186 EENVVESHISKLRKKLRNK 204 + V++ + +LRKK+ +K Sbjct: 192 DMRTVDTLVKQLRKKMTDK 210 >gi|29829952|ref|NP_824586.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607062|dbj|BAC71121.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 243 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 8/131 (6%) Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ------GEVFPL 149 DD + KP + E++AR+ A+ RR + ++ P+R + D E G L Sbjct: 114 DDYITKPFNIDEVVARITAVLRRTRPADALPRRPPLR-YGDLELDETTYSARRAGHTVEL 172 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 E +L +L+ N G+ V K Q+ ++ E VVE++IS LR+KL LG Sbjct: 173 TPTEYALLRFLVRNGGRIVTKEQLLRHVWQYEHTPAESTVVETYISYLRRKL-EPLGPPV 231 Query: 210 VDSKRFLGYSI 220 + ++R +GY + Sbjct: 232 IQTRRGVGYGL 242 >gi|86609993|ref|YP_478755.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558535|gb|ABD03492.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 246 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 74/145 (51%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR+ S + Sbjct: 72 LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVARSAHDG 131 Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G IR+ ++ R + E L E +LE L++ G+ ++++I ++G Sbjct: 132 IPSSGVIQVGDIRIDTNKRQVYKRDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 191 Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203 E V+ VV+ HIS+LR KL + Sbjct: 192 YTPERHVDTRVVDVHISRLRAKLED 216 >gi|27468018|ref|NP_764655.1| putative response regulator ArlR [Staphylococcus epidermidis ATCC 12228] gi|251810848|ref|ZP_04825321.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282876146|ref|ZP_06285013.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293366617|ref|ZP_06613294.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|81842840|sp|Q8CP82|ARLR_STAES RecName: Full=Response regulator ArlR gi|27315563|gb|AAO04697.1|AE016747_194 putative response regulator ArlR [Staphylococcus epidermidis ATCC 12228] gi|251805683|gb|EES58340.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281295171|gb|EFA87698.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291319386|gb|EFE59755.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329729376|gb|EGG65782.1| response regulator ArlR [Staphylococcus epidermidis VCU144] gi|329732898|gb|EGG69243.1| response regulator ArlR [Staphylococcus epidermidis VCU028] gi|329735341|gb|EGG71633.1| response regulator ArlR [Staphylococcus epidermidis VCU045] Length = 219 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 2/130 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 D G DD + KP E+LAR+ A+ RR + + + I + D V G L Sbjct: 91 LDYGADDYIVKPFDIEELLARIRAVLRR-QPDKDVLDINGIIIDKDAFKVTVNGHQLELT 149 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 + E +L L NR + + QI ++G ++ VE NVV+ +I LR KL+ + Sbjct: 150 KTEYDLLYVLAENRNHVMQREQILDHVWG-YNSEVETNVVDVYIRYLRNKLKPFNKEKSI 208 Query: 211 DSKRFLGYSI 220 ++ R +GY I Sbjct: 209 ETVRGVGYVI 218 >gi|17549661|ref|NP_523001.1| two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431915|emb|CAD18593.1| probable two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 226 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 107/229 (46%), Gaps = 17/229 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGE 58 ++I+D A V D F G+ EG+ L E LQ + + + + L+ G Sbjct: 3 ILVIEDDARVSD-----FLSRGLRAEGYRVLLARTGPEGLQLARTGEPALLLLDLMLPGM 57 Query: 59 KVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LEL + +RA + VP++ ++ + + G DD + KP E+LAR+ A+ R Sbjct: 58 SGLELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLR 117 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R + R + ++V D E G+ L +E LE LM+ G+ ++ + Sbjct: 118 RGR--EQRPKVNVLQVADLVLDRERMQVTRAGKPIALTAKELAFLELLMSAPGRIYSRER 175 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I S ++G ++ + N+V+ ++ +LR K+ + + R LGY +D Sbjct: 176 ILSNVWGANEDPL-TNIVDVYVRRLRSKIDEGQPVPLLKTVRGLGYRLD 223 >gi|328943482|ref|ZP_08240947.1| response regulator [Atopobium vaginae DSM 15829] gi|327491451|gb|EGF23225.1| response regulator [Atopobium vaginae DSM 15829] Length = 245 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 5/137 (3%) Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE---TGPIRVFSDGRDPEVQ 143 L SG DD + KP + + +LA +A++ RR + +S+ +A G I + Sbjct: 105 LVCLSSGADDFIAKPYNPQILLAHIASVLRRVMPMSDKQASVLRCGTIELNLKTCTASAH 164 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 G+ L + E +IL L+ + + V++TQI A++ DE V++N + ++S LR++L Sbjct: 165 GKTTELTKNELKILTLLIQRQTEVVSRTQIQEALWQ-SDEYVDDNTLTVNVSHLRQRLAY 223 Query: 204 KLGFDPVDSKRFLGYSI 220 V + R LGY I Sbjct: 224 IGEPHAVVTHRGLGYCI 240 >gi|325571333|ref|ZP_08146833.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus casseliflavus ATCC 12755] gi|325155809|gb|EGC68005.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus casseliflavus ATCC 12755] Length = 234 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 10/117 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGR--------DPEVQG 144 G DD + KP RE+LAR+ AI+RRL+ R E P + G V G Sbjct: 95 GADDYLTKPFSPREVLARMKAIFRRLEPRQQTREEDQPAEILQVGGIQADLTNFQVSVDG 154 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E L +E +L Y M +G+ + + + + I+ FD + +V+ HIS LR+KL Sbjct: 155 EKIFLTPKEFELLVYFMKRKGRVIDRDTLLNRIWN-FDFDGQSRIVDVHISHLREKL 210 >gi|260438876|ref|ZP_05792692.1| DNA-binding response regulator RegX3 [Butyrivibrio crossotus DSM 2876] gi|292808715|gb|EFF67920.1| DNA-binding response regulator RegX3 [Butyrivibrio crossotus DSM 2876] Length = 221 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 3/190 (1%) Query: 33 EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFD 92 +F++ L + D I L G L R+ R P+I ++ + L Sbjct: 33 DFKDTLDEMLKTDTELILLDLNLPGIDGQTLLRMYRKEKNTPVIIVTSKDTEMDELICMT 92 Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152 G DD V+KP + +L + A+ RR N I + G L + Sbjct: 93 YGADDFVSKPYNPALLLLHIEAVLRRNGGDENVIRYRYITLNLSRSSISGNGNEIELSKN 152 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVD 211 E RIL Y+ N GK V++ I + ++ E V++N + +I+++R KL +LG+ D + Sbjct: 153 ECRILNYMFRNSGKIVSRDDIMNYLWDDC-EFVDDNTLTVNITRVRHKLA-ELGYGDVIS 210 Query: 212 SKRFLGYSID 221 +KR GY I+ Sbjct: 211 TKRGQGYYIE 220 >gi|241763450|ref|ZP_04761504.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241367392|gb|EER61713.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 230 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 12/209 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +V G D G +++ S E E + + D + I+ L L Sbjct: 3 LLLVEDDVMVASGIKLGLTDAGYAVDWVGSGERAEEVLRTESFDAAIIDIGL--PAMDGL 60 Query: 62 ELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 EL R +R A S +P++ ++ +L + D G DD + KP E+LAR+ A+ R Sbjct: 61 ELTRRLRRPGMASSAMPVLILTARDALHDRVQGLDLGADDYMVKPFELPELLARLRALLR 120 Query: 118 RLKVSNNRAET-GPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVAKTQ 172 R + + + GP+ + + GR V+ +V L RE +LEYL+ + K +K + Sbjct: 121 RSQAATTAVLSFGPLELDTAGRRASVRSGEIDQVIDLGPREWTVLEYLLIHAPKPASKDK 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + A+ G +D+ + N VE ++S+LR KL Sbjct: 181 LLQALTG-WDKEITPNAVEVYVSRLRGKL 208 >gi|170077600|ref|YP_001734238.1| two-component DNA binding response regulator [Synechococcus sp. PCC 7002] gi|169885269|gb|ACA98982.1| Two-component DNA binding response regulator [Synechococcus sp. PCC 7002] Length = 242 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 +R S VP+I ++ + + + G DD V KP +E+ AR+ ++ RR++ Sbjct: 71 LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKNGGTG 130 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ G IR+ ++ R E L E +LE L++ G+ ++++I ++G Sbjct: 131 IPSSGVIHVGSIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 190 Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203 E V+ VV+ HIS+LR KL + Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215 >gi|164520412|gb|ABY60261.1| PhoP [Listeria monocytogenes] Length = 233 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 12/119 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRR-----------LKVSNNRAETGPIRVFSDGRDPEV 142 G DD + KP RE++AR+ AI RR + S R G +++ D + + Sbjct: 92 GADDYMTKPFSPREVVARIKAILRRTEGKAEIIEEITEDSEARILIGDLKILPDSYEVYL 151 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR K+ Sbjct: 152 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 209 >gi|160937479|ref|ZP_02084840.1| hypothetical protein CLOBOL_02370 [Clostridium bolteae ATCC BAA-613] gi|158439548|gb|EDP17298.1| hypothetical protein CLOBOL_02370 [Clostridium bolteae ATCC BAA-613] Length = 233 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 19/200 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 LV +GY +DG SL FE + S D+ ++ + G L IR Sbjct: 22 LVNEGYEVETFEDGKSL-------FEAFHASCP--DLIILDIMM--PGMDGFALCTAIRR 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 S+VP+I +S + + G DD + KP E++ARV A++RR R + G Sbjct: 71 ESRVPIIIVSAKDAPMDRVTGITLGSDDYMVKPFLPLELVARVKALFRR--AGYIRQDAG 128 Query: 130 PIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 V ++ R V G F + E L+YLM RG+ V+K + ++ L D Sbjct: 129 ETLVCANLSLDPRSRCMTVDGAHFSVTPTEFAFLQYLMERRGEAVSKQVLLKEVWELPDY 188 Query: 184 AVEENVVESHISKLRKKLRN 203 ++ V + + +LR+K R Sbjct: 189 DLDTRVADDLVKRLRRKFRE 208 >gi|92118758|ref|YP_578487.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91801652|gb|ABE64027.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 221 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 103/232 (44%), Gaps = 31/232 (13%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLE-------GFNSLEFEEWLQSSAREDVSAIEAFLI 54 +LI+D A+ + +G++++ GF +L+ E + A DV E Sbjct: 3 LLLIEDDAMFGKALVRGLKQNGMTIDWVRNGPDGFAALKRAE--HAIALLDVGLPEM--- 57 Query: 55 GKGEKVLELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G VL + +R S+ P ++ I+ ++ + D G DD + KP R +LAR+ Sbjct: 58 -SGFDVL---KAMRGTSKAPPILIITARDQVEDMVTGLDLGADDYIVKPFELRALLARIR 113 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRV 168 AI RR+ +N T DP F L RE +L LM G + Sbjct: 114 AIVRRVNARSNSVVTSKEITL----DPSTYIATFRGIESVLSAREFSVLHALMERPGTIL 169 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++QI S IYG + E V+ N V+ I LRK K G D + + R G+ + Sbjct: 170 SRSQIESRIYG-WSEEVQSNAVDVVIHGLRK----KYGKDIIRNIRGAGWMV 216 >gi|329768100|ref|ZP_08259609.1| hypothetical protein HMPREF0428_01306 [Gemella haemolysans M341] gi|328838255|gb|EGF87867.1| hypothetical protein HMPREF0428_01306 [Gemella haemolysans M341] Length = 222 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 81/156 (51%), Gaps = 6/156 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I IS + + G DD + KP + A++ A+ RR+ N+ Sbjct: 67 IRKISKVPIIFISSASDDMNIVMAMNIGADDFIEKPFKLVVLKAKIEALLRRVYNFNSSN 126 Query: 127 ETGPIR--VFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + +F +D + + + L + E +IL L+ NR K V++ I +A++ D Sbjct: 127 SLIVYKEVIFDINKDEIKYKDNIATLTKNESKILTILLENREKIVSREDIIAALWQS-DN 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 ++EN + +I++LR KL++ +G D + +K+ GY Sbjct: 186 FIDENTLSVNINRLRAKLKS-IGIDEFITTKKGKGY 220 >gi|320335834|ref|YP_004172545.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319757123|gb|ADV68880.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 219 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 5/159 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+L + +R +S P++ +S ++Q + ++G DD + KP E+ AR++A+ RR Sbjct: 61 LDLVQALRQYSSTPVLVLSARSNVQERVAGLNAGADDYLTKPFAMPELDARISALLRR-T 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + + L E RILE +M + ++ I S +YG Sbjct: 120 AAGTGVNLGNTSLSTSSLTLTAGEQSTALTEHEARILELMMRTPDRVFSRADIESHLYGW 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218 E N VE IS+LRKKL ++G D V + R +GY Sbjct: 180 --ETPNSNSVEVRISQLRKKLE-QVGSDLRVRTIRNVGY 215 >gi|310639947|ref|YP_003944705.1| alkaline phosphatase synthesis transcriptional regulatory protein [Paenibacillus polymyxa SC2] gi|309244897|gb|ADO54464.1| Alkaline phosphatase synthesis transcriptional regulatory protein [Paenibacillus polymyxa SC2] Length = 224 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 30/187 (16%) Query: 46 VSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH 105 + ++ F IGK R+ + + ++P++ +S S+ L D DD V KP H Sbjct: 54 LPGLDGFTIGK--------RLKKEYPELPILMLSARTSIDDKLQGLDFA-DDYVTKPFHP 104 Query: 106 REILARVAAIYRRL-KVSNNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEY 159 E++AR+ + RR VS + G + VF RD GE L ++ I Y Sbjct: 105 DELIARMEILLRRSGSVSEESLQLGHLSVFPPDNRIVNRD---TGEEITLTGKQYHIFAY 161 Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDP-----VDSK 213 L+ + G+ + K Q++ A++G D ++ + + HI + LR KL DP +++ Sbjct: 162 LLRHLGQIMTKEQMYEAVWG--DPYIDGDKTLMVHI----RHLREKLEIDPATPRIIETI 215 Query: 214 RFLGYSI 220 R +GY + Sbjct: 216 RGVGYRV 222 >gi|306833709|ref|ZP_07466836.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|304424479|gb|EFM27618.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] Length = 226 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 80/162 (49%), Gaps = 5/162 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + I + +Q +I ++ + + D+G DD + KP +E+LAR+ ++ RR+ Sbjct: 63 VQEIRQTGNQSHIIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRRVDTN 122 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179 ++N G + + G V L +E ++LE+ M N GK+++ QIF+ ++ Sbjct: 123 FTSNILTVGTV-TLNVGEQELVSQNTIRLAGKESKMLEFFMLNAGKKLSTDQIFNHVWAN 181 Query: 180 -LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D ++ V ++S LR+KL++ ++ + GY + Sbjct: 182 DKDDPEIDNGYVFIYVSYLRQKLKSIGANVVIEGEEMGGYEL 223 >gi|295398639|ref|ZP_06808664.1| response regulator [Aerococcus viridans ATCC 11563] gi|294973127|gb|EFG48929.1| response regulator [Aerococcus viridans ATCC 11563] Length = 238 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 13/153 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR SQVP+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 61 LEVCRQIRKDSQVPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELMARVKANIRRTA 120 Query: 121 V------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 V +N E G + + D GE L RE +L YL + + + Sbjct: 121 VVAEPVVADEVTEKDNIIEIGDLLIHEDEYIASKNGEDVELTHREFELLHYLSQHINQVM 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + + ++G +D + V+ + +LR+K+ Sbjct: 181 TREHLLQTVWG-YDYFGDVRTVDVTVRRLREKI 212 >gi|253999965|ref|YP_003052028.1| two component transcriptional regulator PhoB [Methylovorus sp. SIP3-4] gi|313201938|ref|YP_004040596.1| two component transcriptional regulator PhoB [Methylovorus sp. MP688] gi|253986644|gb|ACT51501.1| two component transcriptional regulator PhoB, winged helix family [Methylovorus sp. SIP3-4] gi|312441254|gb|ADQ85360.1| two component transcriptional regulator PhoB, winged helix family [Methylovorus sp. MP688] Length = 228 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 7/150 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130 +P+I ++ + + G DD V KP RE+ AR+ A+ RR +++++ E G Sbjct: 77 IPIIMLTARGEEADKVKGLEVGADDYVTKPFSPRELNARIKAVLRRRAPQMTDDPIEVGG 136 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--LFDEAVEEN 188 +R+ G L E R+L YLM+N + +++Q+ ++G +F VE+ Sbjct: 137 LRLDPVTHRVTGNGTTLDLGPTEFRLLHYLMSNPERVHSRSQVLDRVWGDRVF---VEDR 193 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ HI +LR L + D + + R +GY Sbjct: 194 TVDVHIRRLRLALADSGHEDLIQTVRGVGY 223 >gi|239944760|ref|ZP_04696697.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239991225|ref|ZP_04711889.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291448223|ref|ZP_06587613.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291351170|gb|EFE78074.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 230 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 11/161 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + P+I ++ +++ + + G DD V KP E+LAR+ A+ RR + A Sbjct: 69 IRKRTATPVIMVTARADVRSRIHGLNLGADDYVTKPYDTGELLARIHAVARRTSSGEDTA 128 Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 T GP+ + R V GE L R+E +L L G + QI S ++ Sbjct: 129 PTPVAALRLGPVAIELPTRRVSVDGEEVQLTRKEFDLLALLAQRPGVVFRREQIISEVWR 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E +E H++ LR KLR + V R +GY + Sbjct: 189 TSWEGTGRT-LEVHVASLRSKLRLPTLIETV---RGVGYRL 225 >gi|229015978|ref|ZP_04172939.1| Two-component response regulator [Bacillus cereus AH1273] gi|229022195|ref|ZP_04178745.1| Two-component response regulator [Bacillus cereus AH1272] gi|228739126|gb|EEL89572.1| Two-component response regulator [Bacillus cereus AH1272] gi|228745338|gb|EEL95379.1| Two-component response regulator [Bacillus cereus AH1273] Length = 225 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKRIRSFSNVPIIMVTARDQKVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N R + + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDHHLKTVYGVGYRW 220 >gi|209548309|ref|YP_002280226.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534065|gb|ACI54000.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 227 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 5/133 (3%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFP 148 ++G DD + KP E+LARV A+ RR V + + + + R+ G+ Sbjct: 91 LEAGGDDYLTKPFAFSELLARVNALGRRPPVQEQKTVLKVADLELDLIRREARRAGQAIE 150 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGF 207 L RE +LE LM G+ + KT + ++ FD + +VVE+HIS+LR K+ Sbjct: 151 LQPREFTLLEVLMRGEGRVITKTMLLERVWDFHFDP--KTSVVETHISRLRAKVDRPFQA 208 Query: 208 DPVDSKRFLGYSI 220 + + R GYS+ Sbjct: 209 QLLHTVRNTGYSL 221 >gi|116074029|ref|ZP_01471291.1| Two component Transcriptional regulator, Winged helix family protein [Synechococcus sp. RS9916] gi|116069334|gb|EAU75086.1| Two component Transcriptional regulator, Winged helix family protein [Synechococcus sp. RS9916] Length = 229 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P+I I+ + + ++G DD + KP + RE+LAR A+ RR + S++ + G + Sbjct: 78 LPVIMITARDEMDDRVAALEAGADDFIAKPFNVREVLARAKALLRRSQGFSSDVLQVGDL 137 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + R + G L RE +LE M + + +++ Q+ ++G D +ENVV+ Sbjct: 138 VLNGAERTCAINGTPLVLTVREFDLLECFMRHPRQALSRAQLIQHVWG-DDYFGDENVVD 196 Query: 192 SHISKLRKKL 201 ++ LRKKL Sbjct: 197 VYVRYLRKKL 206 >gi|15901089|ref|NP_345693.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|111657843|ref|ZP_01408558.1| hypothetical protein SpneT_02000966 [Streptococcus pneumoniae TIGR4] gi|116515650|ref|YP_816556.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|148985122|ref|ZP_01818361.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|148989249|ref|ZP_01820629.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|148993837|ref|ZP_01823239.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|148998657|ref|ZP_01826096.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|149002595|ref|ZP_01827527.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|149007115|ref|ZP_01830784.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|149012278|ref|ZP_01833347.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|149019219|ref|ZP_01834581.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168484877|ref|ZP_02709822.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|168486549|ref|ZP_02711057.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|168489055|ref|ZP_02713254.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|168491148|ref|ZP_02715291.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|168493149|ref|ZP_02717292.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|168577194|ref|ZP_02723003.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|169832995|ref|YP_001694658.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pneumoniae Hungary19A-6] gi|194397986|ref|YP_002037828.1| response regulator [Streptococcus pneumoniae G54] gi|221231922|ref|YP_002511074.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225854693|ref|YP_002736205.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225856894|ref|YP_002738405.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] gi|225859008|ref|YP_002740518.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225860939|ref|YP_002742448.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|237649929|ref|ZP_04524181.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974] gi|237822522|ref|ZP_04598367.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974M2] gi|298230882|ref|ZP_06964563.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254363|ref|ZP_06977949.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502777|ref|YP_003724717.1| DNA-binding response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303254277|ref|ZP_07340386.1| response regulator protein [Streptococcus pneumoniae BS455] gi|303258862|ref|ZP_07344841.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP-BS293] gi|303261546|ref|ZP_07347493.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP14-BS292] gi|303264216|ref|ZP_07350136.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS397] gi|303266153|ref|ZP_07352046.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS457] gi|303268120|ref|ZP_07353920.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS458] gi|307067876|ref|YP_003876842.1| CheY-like receiver/winged-helix DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307127185|ref|YP_003879216.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|14193094|gb|AAK55817.1|AF219111_1 putative response regulator [Streptococcus pneumoniae] gi|5830523|emb|CAB54568.1| response regulator [Streptococcus pneumoniae] gi|14972708|gb|AAK75333.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|116076226|gb|ABJ53946.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|147755494|gb|EDK62542.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|147759206|gb|EDK66199.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|147761419|gb|EDK68385.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|147763604|gb|EDK70539.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147922567|gb|EDK73685.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|147925227|gb|EDK76306.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|147927662|gb|EDK78687.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|147931089|gb|EDK82068.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168995497|gb|ACA36109.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Hungary19A-6] gi|172041974|gb|EDT50020.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|183570421|gb|EDT90949.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|183572520|gb|EDT93048.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|183574479|gb|EDT95007.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|183576730|gb|EDT97258.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|183577211|gb|EDT97739.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|194357653|gb|ACF56101.1| response regulator TCS02 [Streptococcus pneumoniae G54] gi|220674382|emb|CAR68932.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225721755|gb|ACO17609.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225722501|gb|ACO18354.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225724998|gb|ACO20850.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] gi|225727250|gb|ACO23101.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|298238372|gb|ADI69503.1| DNA-binding response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301794310|emb|CBW36735.1| response regulator protein [Streptococcus pneumoniae INV104] gi|301800148|emb|CBW32753.1| response regulator protein [Streptococcus pneumoniae OXC141] gi|301801917|emb|CBW34641.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302598771|gb|EFL65808.1| response regulator protein [Streptococcus pneumoniae BS455] gi|302637126|gb|EFL67614.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP14-BS292] gi|302639805|gb|EFL70261.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP-BS293] gi|302642337|gb|EFL72684.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS458] gi|302644323|gb|EFL74577.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS457] gi|302646028|gb|EFL76255.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS397] gi|306409413|gb|ADM84840.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pneumoniae AP200] gi|306484247|gb|ADM91116.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|332073565|gb|EGI84044.1| response regulator [Streptococcus pneumoniae GA17570] gi|332074837|gb|EGI85309.1| response regulator [Streptococcus pneumoniae GA41301] gi|332200675|gb|EGJ14747.1| response regulator [Streptococcus pneumoniae GA41317] gi|332201690|gb|EGJ15760.1| response regulator [Streptococcus pneumoniae GA47368] gi|332203075|gb|EGJ17143.1| response regulator [Streptococcus pneumoniae GA47901] Length = 234 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 11/153 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ + IR S VP++ +S S + + G DD V KP +RE+ ARV A+ RR Sbjct: 61 LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 120 Query: 119 -LKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + V A++ P + + D + GE L RE +L +L ++ G+ + + Sbjct: 121 PMPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITR 180 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ + +LR+K+ + Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 212 >gi|320527273|ref|ZP_08028458.1| response regulator receiver domain protein [Solobacterium moorei F0204] gi|320132297|gb|EFW24842.1| response regulator receiver domain protein [Solobacterium moorei F0204] Length = 221 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 98/209 (46%), Gaps = 19/209 (9%) Query: 24 VSLEGFNS------LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIG 77 ++LEGF+S E E+ L++ + + + G G V + + I Q+P+I Sbjct: 21 LNLEGFSSDYASGQKEAEQLLKTKQYQLLLLDVSLKDGDGFAVCNMAQKI----QLPVIF 76 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG 137 +S +T + + G DD + KP +E+L+R+ + RR I+V + Sbjct: 77 LSASSDEETVVRGLNIGADDYITKPFRPKELLSRIKNVLRRHTGHQTIILLDEIQVDIEK 136 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 + + + L E ++L + +RGK + + Q+ I+ + + V +N + +I +L Sbjct: 137 AIVKKKEKEINLSALEYKLLTLFIDHRGKLLTRDQLLDEIWNIAGDFVNDNTITVYIKRL 196 Query: 198 RKKLRNKLGFDPVDSK-----RFLGYSID 221 R+K+ + DP + K R LGY +D Sbjct: 197 REKIED----DPTNPKIIKTVRGLGYRMD 221 >gi|291549217|emb|CBL25479.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 225 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 6/139 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP+I IS + + G DD V KP + A++ A+ RR + + Sbjct: 67 IRKISSVPVIFISSAADNMNIIMAMNMGGDDFVAKPFDLSVLTAKIQALLRRTYDLSGKV 126 Query: 127 ----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 G I D GE L + E RIL+ LM N+G+ V++ + + ++ D Sbjct: 127 PMLEHRGAILNLYD-TTMTYNGEKIELTKNEFRILQTLMENKGRVVSRDTLMTKLWET-D 184 Query: 183 EAVEENVVESHISKLRKKL 201 +EEN + ++ +LRKKL Sbjct: 185 NYIEENTLTVNVGRLRKKL 203 >gi|254518210|ref|ZP_05130266.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226911959|gb|EEH97160.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 230 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++D ++G ++ F + E+ L+ +E++ + ++ G L Sbjct: 5 ILVIDDEKEIRDLLEINLKNEGYNV--FKASNGEKALEILDKEEIHLMVLDIMMPGMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P++ +S + +G DD V KP +H E+ R+ A+ RR Sbjct: 63 EVCRRVREKYNIPILMLSAKTEDMDKIQGIMTGADDYVCKPFNHLELTVRIRALLRRAYF 122 Query: 122 SNNRAET--GPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + IR+ S D + L RE IL L +NRG+ + +IF Sbjct: 123 LNTKMQALDNIIRIESMIIDKSKHKVTIDDNEVSLTAREFEILYLLASNRGRVFSTEEIF 182 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + ++ N V H+S+LR KL + G + + +GY I+ Sbjct: 183 EKVWKERYYQS--NNTVMVHMSRLRDKLEQYMEGNKIIHTVWGVGYKIE 229 >gi|213965336|ref|ZP_03393532.1| KDP operon transcriptional regulatory protein KdpE [Corynebacterium amycolatum SK46] gi|213951952|gb|EEB63338.1| KDP operon transcriptional regulatory protein KdpE [Corynebacterium amycolatum SK46] Length = 247 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 71/147 (48%), Gaps = 7/147 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R S +P++ +S ++ + G DD V KP E+LAR+ + RR Sbjct: 77 LEVLRSLRRWSDIPVLIVSARHDEAGKINALNEGADDYVTKPFSMGELLARLRSTMRRAS 136 Query: 121 VSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G + V R V E+ L RE IL YL+ +RG+ V K ++ Sbjct: 137 KVVVEEVPKVASADGHLMVDLAKRQVLVADELVHLTPREWDILVYLVQHRGELVTKLELL 196 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 A++G E E N + +IS+LR K+ Sbjct: 197 KAVWGDQYEK-ETNYLRVYISQLRHKI 222 >gi|254471766|ref|ZP_05085167.1| two-component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] gi|211958968|gb|EEA94167.1| two-component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] Length = 223 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 25/162 (15%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122 + P++ +S + + +G DD + KP E+LARV + RR L+VS Sbjct: 69 ETPVLILSALSQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLSRRKAGPQVETKLQVS 128 Query: 123 N---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +R R G+ L RE R+LEYLM + G+ V +T + ++ Sbjct: 129 DLVLDRLAHSVTRA----------GQEIVLQPREFRLLEYLMKHAGQVVTRTMLLENVWD 178 Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + NV++ HIS+LR K+ F + + R GYSI Sbjct: 179 YHFDP--QTNVIDVHISRLRSKIDKGFDFPLLHTVRGAGYSI 218 >gi|194434141|ref|ZP_03066409.1| transcriptional regulatory protein CreB [Shigella dysenteriae 1012] gi|218708083|ref|YP_002415602.1| DNA-binding response regulator CreB [Escherichia coli UMN026] gi|256025318|ref|ZP_05439183.1| DNA-binding response regulator CreB [Escherichia sp. 4_1_40B] gi|293403071|ref|ZP_06647168.1| transcriptional regulatory protein creB [Escherichia coli FVEC1412] gi|298378597|ref|ZP_06988481.1| two-component system [Escherichia coli FVEC1302] gi|300896756|ref|ZP_07115262.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|301330244|ref|ZP_07222902.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|301646920|ref|ZP_07246765.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|307136599|ref|ZP_07495955.1| DNA-binding response regulator CreB [Escherichia coli H736] gi|331640443|ref|ZP_08341591.1| transcriptional regulatory protein CreB [Escherichia coli H736] gi|331661358|ref|ZP_08362282.1| transcriptional regulatory protein CreB [Escherichia coli TA143] gi|194417578|gb|EDX33679.1| transcriptional regulatory protein CreB [Shigella dysenteriae 1012] gi|218435180|emb|CAR16138.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli UMN026] gi|291429986|gb|EFF03000.1| transcriptional regulatory protein creB [Escherichia coli FVEC1412] gi|298280931|gb|EFI22432.1| two-component system [Escherichia coli FVEC1302] gi|300359412|gb|EFJ75282.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300843750|gb|EFK71510.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|301074908|gb|EFK89714.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|320177680|gb|EFW52669.1| Two-component response regulator CreB [Shigella boydii ATCC 9905] gi|331040189|gb|EGI12396.1| transcriptional regulatory protein CreB [Escherichia coli H736] gi|331061273|gb|EGI33236.1| transcriptional regulatory protein CreB [Escherichia coli TA143] gi|332083394|gb|EGI88625.1| transcriptional regulatory protein creB [Shigella boydii 5216-82] gi|332098001|gb|EGJ02974.1| transcriptional regulatory protein creB [Shigella dysenteriae 155-74] Length = 229 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ V + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 + + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ ++ Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|168180732|ref|ZP_02615396.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226949683|ref|YP_002804774.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182668403|gb|EDT80382.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226842646|gb|ACO85312.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 226 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 5/164 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R S +P+I ++ ++ + D+G DD + KP E+LAR+ ++ Sbjct: 61 LEVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120 Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V+ + E G + + R L RE +L+ LM N+ + ++ + Sbjct: 121 VTVKKDEDIIRCGLLSLDKMRRKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G +D E NV++ +I LR K+ + + + R +GY I Sbjct: 181 VCG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223 >gi|311108765|ref|YP_003981618.1| transcriptional regulator QseB 4 [Achromobacter xylosoxidans A8] gi|310763454|gb|ADP18903.1| transcriptional regulatory protein QseB 4 [Achromobacter xylosoxidans A8] Length = 238 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGP 130 VP++ ++ SL+ L F G DD + KP E+ AR+ A+ +R K + A GP Sbjct: 84 VPVLMLTARDSLEDKLAGFSHGADDYLTKPFALLEVEARLIALIQRAKGATVDAVRAFGP 143 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + R V G L R+ I+E L+ + G+ V++ ++ S ++G +E + + Sbjct: 144 LSYDTRNRAVSVNGNPVHLTRKASLIIEALLRDPGRVVSREELESTLWG--NEPPSSDAL 201 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 S + LR+ L + GFD +++ G+ + Sbjct: 202 RSQVHLLRRALADA-GFDGIETIHGTGWRL 230 >gi|322434161|ref|YP_004216373.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] gi|321161888|gb|ADW67593.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] Length = 226 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 2/159 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L RI R ++ VP++ ++ S++ + F++G DD + KP E+L R A+ RR V+ Sbjct: 63 LQRIRRTNTCVPVLMLTARDSVEDKVRMFENGADDYLTKPFAFAELLVRSKALLRRGPVN 122 Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + T G + + + + G+ L +E +LEYLM N + +++ I ++ Sbjct: 123 RSSTMTVGELELDRLTQQVKRAGKRIELTAKEYSLLEYLMQNAERVLSRNMIIEHVWDQS 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N+V+ ++ LR K+ + + + R GY I Sbjct: 183 FDGI-TNIVDVYVRHLRAKVDDGHIIKLIRTVRGSGYMI 220 >gi|300785061|ref|YP_003765352.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794575|gb|ADJ44950.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 230 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 2/109 (1%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRR 152 G DD V KP E++AR+ AI RR T GP+ + ++G G+ L Sbjct: 100 GADDYVTKPFDLAELIARIRAILRRTAGRPAGVLTAGPLALDAEGHQVTRAGQAIRLSAT 159 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E R+L YLM N G+ V+K QI ++ D + +V+++IS LR+K+ Sbjct: 160 EFRLLRYLMENAGRVVSKGQILDRVW-RDDFGGDAGIVDTYISYLRRKV 207 >gi|295108122|emb|CBL22075.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 230 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 13/144 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + +P++ + + + +G DD + KP E++AR+A++ RR N +A Sbjct: 67 IRKENSLPILMFTSKNDSVSKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNQQA 126 Query: 127 ETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179 T +++ + R + F LP +E +L Y ++GK + K QI+ ++G Sbjct: 127 GTMQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVWGE 186 Query: 180 --LFDEAVEENVVESHISKLRKKL 201 +D++ N++ + IS+LRKKL Sbjct: 187 EYFYDDS---NIM-AIISRLRKKL 206 >gi|154495761|ref|ZP_02034457.1| hypothetical protein BACCAP_00040 [Bacteroides capillosus ATCC 29799] gi|150274959|gb|EDN02007.1| hypothetical protein BACCAP_00040 [Bacteroides capillosus ATCC 29799] Length = 248 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 4/168 (2%) Query: 57 GEKVLEL-PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G LEL R+ +A P++ ++ + +D D+G DD + KP E+LAR+ A+ Sbjct: 79 GMDGLELVSRLRKAGITAPVLMVTALDGVSDRVDGLDAGADDYLTKPFAAEELLARIRAL 138 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQI 173 RR + + D + +QG L +RE R+LE + N G+ + + + Sbjct: 139 SRRPVQWEQSSALSRWGLELDVKLCTLQGPGGSCSLSKRESRLLEIFLRNAGQTMTRELL 198 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++G D VEE ++++I LR++L + + R +GY ++ Sbjct: 199 LARVWG-PDAPVEEGNLDNYIHFLRRRLSAVGSGARIVTARGVGYRLE 245 >gi|118593184|ref|ZP_01550570.1| osmolarity response regulator [Stappia aggregata IAM 12614] gi|118434269|gb|EAV40924.1| osmolarity response regulator [Stappia aggregata IAM 12614] Length = 242 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 12/212 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +IDD A V+D AL G F + + S D++ I+ L KGE Sbjct: 9 VIAIIDDDADVRDTLSALMEASGFEPVAFQDSDGFKAAGSPQDFDLALIDLRL--KGESG 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 L L IR S++P++ ++ + ++G DD + KP + RE++AR+ A+ RR Sbjct: 67 LSLAIHIRETSELPIVMLTGVGDEIDKIIGLETGADDYLMKPFNPRELVARIRAVLRRYG 126 Query: 120 -KVSNNRAETGPIRVFSDGRDP-------EVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 VS +A VF D R + G+ PL E +LEY + N + + +T Sbjct: 127 HGVSAVKAGKDQEIVFGDKRVNLKRRELLDGNGDEIPLTNAEYVLLEYFVKNPDRIIPRT 186 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + I V+ ++ I +LR+K+ N Sbjct: 187 DLMREIGSDMQRYVDRT-IDVLILRLRRKIEN 217 >gi|91774787|ref|YP_544543.1| two component transcriptional regulator [Methylobacillus flagellatus KT] gi|91708774|gb|ABE48702.1| two component transcriptional regulator, winged helix family [Methylobacillus flagellatus KT] Length = 237 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 67/132 (50%), Gaps = 2/132 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGP 130 +P++ I++ + + SG DD ++KP+ RE+ AR+ A+ RRL + E G Sbjct: 74 IPILMITNRSDERDVVHGLTSGADDFMSKPVRVRELHARINALLRRLYPQQGQQEFVWGN 133 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + E G L +E + +L N+G+ +++ I I+G+ ++ + Sbjct: 134 YKCNVAQQRFEHHGVPVALKNKEFELALFLFQNQGRLLSRQHIQEQIWGMQSVDLQTRTL 193 Query: 191 ESHISKLRKKLR 202 ++HIS +R KL+ Sbjct: 194 DTHISAIRSKLK 205 >gi|119717917|ref|YP_924882.1| response regulator receiver [Nocardioides sp. JS614] gi|119538578|gb|ABL83195.1| response regulator receiver [Nocardioides sp. JS614] Length = 236 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 82/166 (49%), Gaps = 9/166 (5%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IR+ VP++ ++ +++ + +G DD V KP E++AR+ + RR Sbjct: 70 LEVLRRIRSTDPSVPVVFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRA 129 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 A + G + + D R+ G L E +L +LM N + ++K QI Sbjct: 130 GAQQATASSTLVVGDLELDEDSREVFRAGREVTLTATEFELLRFLMRNPRRVLSKAQILD 189 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 ++ +D + NVVE +IS LRKK+ G +P + + R GY + Sbjct: 190 RVWN-YDFGGQANVVELYISYLRKKI--DAGHEPMIHTMRGAGYVL 232 >gi|22125161|ref|NP_668584.1| DNA-binding transcriptional activator KdpE [Yersinia pestis KIM 10] gi|45442274|ref|NP_993813.1| DNA-binding transcriptional activator KdpE [Yersinia pestis biovar Microtus str. 91001] gi|51597236|ref|YP_071427.1| DNA-binding transcriptional activator KdpE [Yersinia pseudotuberculosis IP 32953] gi|108808412|ref|YP_652328.1| DNA-binding transcriptional activator KdpE [Yersinia pestis Antiqua] gi|108811338|ref|YP_647105.1| DNA-binding transcriptional activator KdpE [Yersinia pestis Nepal516] gi|145598867|ref|YP_001162943.1| DNA-binding transcriptional activator KdpE [Yersinia pestis Pestoides F] gi|149365419|ref|ZP_01887454.1| two-component regulatory protein response regulator KdpE [Yersinia pestis CA88-4125] gi|153948878|ref|YP_001400083.1| DNA-binding transcriptional activator KdpE [Yersinia pseudotuberculosis IP 31758] gi|162420859|ref|YP_001607903.1| DNA-binding transcriptional activator KdpE [Yersinia pestis Angola] gi|165925364|ref|ZP_02221196.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis biovar Orientalis str. F1991016] gi|165937198|ref|ZP_02225763.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis biovar Orientalis str. IP275] gi|166008140|ref|ZP_02229038.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis biovar Antiqua str. E1979001] gi|166212385|ref|ZP_02238420.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis biovar Antiqua str. B42003004] gi|167399338|ref|ZP_02304862.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421313|ref|ZP_02313066.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423783|ref|ZP_02315536.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469457|ref|ZP_02334161.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis FV-1] gi|170023401|ref|YP_001719906.1| DNA-binding transcriptional activator KdpE [Yersinia pseudotuberculosis YPIII] gi|186896337|ref|YP_001873449.1| DNA-binding transcriptional activator KdpE [Yersinia pseudotuberculosis PB1/+] gi|218929761|ref|YP_002347636.1| DNA-binding transcriptional activator KdpE [Yersinia pestis CO92] gi|229895558|ref|ZP_04510729.1| DNA-binding response regulator in two-component regulatory system with KdpD [Yersinia pestis Pestoides A] gi|229898812|ref|ZP_04513957.1| DNA-binding response regulator in two-component regulatory system with KdpD [Yersinia pestis biovar Orientalis str. India 195] gi|229901586|ref|ZP_04516708.1| DNA-binding response regulator in two-component regulatory system with KdpD [Yersinia pestis Nepal516] gi|270489772|ref|ZP_06206846.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis KIM D27] gi|294504480|ref|YP_003568542.1| two-component regulatory protein response regulator KdpE [Yersinia pestis Z176003] gi|21958023|gb|AAM84835.1|AE013729_3 regulator of kdp operon (transcriptional effector) [Yersinia pestis KIM 10] gi|45437138|gb|AAS62690.1| two-component regulatory protein response regulator KdpE [Yersinia pestis biovar Microtus str. 91001] gi|51590518|emb|CAH22158.1| two-component regulatory protein response regulator KdpE [Yersinia pseudotuberculosis IP 32953] gi|108774986|gb|ABG17505.1| two-component regulatory protein response regulator KdpE [Yersinia pestis Nepal516] gi|108780325|gb|ABG14383.1| two-component regulatory protein response regulator KdpE [Yersinia pestis Antiqua] gi|115348372|emb|CAL21307.1| two-component regulatory protein response regulator KdpE [Yersinia pestis CO92] gi|145210563|gb|ABP39970.1| two-component regulatory protein response regulator KdpE [Yersinia pestis Pestoides F] gi|149291832|gb|EDM41906.1| two-component regulatory protein response regulator KdpE [Yersinia pestis CA88-4125] gi|152960373|gb|ABS47834.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pseudotuberculosis IP 31758] gi|162353674|gb|ABX87622.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis Angola] gi|165915061|gb|EDR33673.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis biovar Orientalis str. IP275] gi|165922971|gb|EDR40122.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis biovar Orientalis str. F1991016] gi|165992522|gb|EDR44823.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis biovar Antiqua str. E1979001] gi|166206316|gb|EDR50796.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis biovar Antiqua str. B42003004] gi|166960802|gb|EDR56823.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051842|gb|EDR63250.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057953|gb|EDR67699.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749935|gb|ACA67453.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] gi|186699363|gb|ACC89992.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] gi|229681515|gb|EEO77609.1| DNA-binding response regulator in two-component regulatory system with KdpD [Yersinia pestis Nepal516] gi|229688360|gb|EEO80431.1| DNA-binding response regulator in two-component regulatory system with KdpD [Yersinia pestis biovar Orientalis str. India 195] gi|229701364|gb|EEO89392.1| DNA-binding response regulator in two-component regulatory system with KdpD [Yersinia pestis Pestoides A] gi|262362528|gb|ACY59249.1| two-component regulatory protein response regulator KdpE [Yersinia pestis D106004] gi|262366467|gb|ACY63024.1| two-component regulatory protein response regulator KdpE [Yersinia pestis D182038] gi|270338276|gb|EFA49053.1| KDP operon transcriptional regulatory protein KdpE [Yersinia pestis KIM D27] gi|294354939|gb|ADE65280.1| two-component regulatory protein response regulator KdpE [Yersinia pestis Z176003] gi|320016103|gb|ADV99674.1| DNA-binding response regulator in two-component regulatory system with KdpD [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 209 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 20/159 (12%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S +P+I +S + + + D+G DD ++KP E+LARV RR + + Sbjct: 51 LRQWSAIPIIVLSARNNEEDKVAALDAGADDYLSKPFGISELLARVRVALRR---HSGAS 107 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + P+ F+D R GE L E R+L L+AN GK + + Q+ + ++G Sbjct: 108 QESPLVNFADISVDLINRQVTRAGENLHLTPIEFRLLTALLANAGKVITQRQLLNQVWG- 166 Query: 181 FDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216 N VE H LR LR KL DP K L Sbjct: 167 ------PNYVE-HSHYLRIYMGHLRQKLEADPTRPKHLL 198 >gi|325264313|ref|ZP_08131044.1| DNA-binding response regulator [Clostridium sp. D5] gi|324030384|gb|EGB91668.1| DNA-binding response regulator [Clostridium sp. D5] Length = 231 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 9/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------L 119 IR ++ +P+I +S + + G DD V KP + E++ARV + RR + Sbjct: 67 IRENNSIPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTQLGGSV 126 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + R E G + + D ++ V GEV L E IL LM N+G+ + QI+ +I+ Sbjct: 127 KEKSERVYEVGGLAINDDLKEVTVDGEVVKLTPIEYNILLLLMKNQGRVFSIDQIYESIW 186 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 D +N V HI +R+K+ Sbjct: 187 N-EDAIGADNTVAVHIRHIREKI 208 >gi|311031098|ref|ZP_07709188.1| two-component response regulator [Bacillus sp. m3-13] Length = 223 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 8/147 (5%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IRA + P+I ++ S+ + D G +D V KP E+LARV A R + Sbjct: 61 LEVLRRIRATDTSTPVILLTARNSIPDKVSGLDLGANDYVTKPFEIEELLARVRASLRTV 120 Query: 120 KVSNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + S G + +V R+ E L +E +L Y + N+G+ + + QI Sbjct: 121 Q-SGTEKNAGVLTVNDWKVNEKTREVSRGDEHVDLTPKEFDLLVYFIENKGQALNREQIL 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 + ++G FD + N+V+ ++ LRKKL Sbjct: 180 NRVWG-FDYYGDTNIVDVYVRHLRKKL 205 >gi|311106814|ref|YP_003979667.1| transcriptional regulator QseB 3 [Achromobacter xylosoxidans A8] gi|310761503|gb|ADP16952.1| transcriptional regulatory protein QseB 3 [Achromobacter xylosoxidans A8] Length = 220 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 105/235 (44%), Gaps = 35/235 (14%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIE----AFLI--- 54 +L++D A++ D G ++ W++ A+ ++ +E A L+ Sbjct: 3 VLLVEDDAMLGDAVHTSLAQSGADVQ---------WVRDVAQARLALVEHGFHAVLLDLG 53 Query: 55 ---GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 G G VL+ R + P++ ++ L + D+G DD + KP E+LAR Sbjct: 54 LPDGSGLAVLKHLRA--RYDATPVLILTARDRLSERIQGLDAGADDYIVKPFQLDELLAR 111 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGK 166 + A+ RR ++ A +R +P + G L E R L LM G Sbjct: 112 LRAVVRR----SSNAVVSALRCRDVVLEPAKRAVTRDGVEVSLSAHEYRTLLALMERIGH 167 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V++ Q+ +A+YG A+E N V +I +LR+KL +KL + + LGY I+ Sbjct: 168 TVSREQLEAAVYG-DSGAIESNTVAVYIHQLRRKLGDKL----ILTVHGLGYRIE 217 >gi|310827668|ref|YP_003960025.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] gi|308739402|gb|ADO37062.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] Length = 222 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 71/138 (51%), Gaps = 4/138 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR + P+I +S + F+ G+DD V KP +E++ RV AI +R + + Sbjct: 67 IRKYKDTPVIMLSARGEEYDRIHGFELGIDDYVVKPFSPKELMMRVGAILKRRGGAQENK 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + G + V GR + G+ + +E + Y++ NRG + + ++ + ++G +D Sbjct: 127 DVVKIGDLEVDFAGRRVTISGKPVEMTPKEYDLFFYMVRNRGIALTREKLITNVWG-YDF 185 Query: 184 AVEENVVESHISKLRKKL 201 ++ +++HI LRK L Sbjct: 186 YGDDRTLDTHIKLLRKSL 203 >gi|264678818|ref|YP_003278725.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|262209331|gb|ACY33429.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] Length = 214 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R R ++P++ ++ ++ ++ +G DD + KP E+ AR+ A+ RR Sbjct: 53 LARWRRQGLELPVLVLTARDAVDQRIEGLQTGADDYLVKPFDLHELAARLHALLRRAAGR 112 Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G ++V +G + L RRE +L L+ + G+ ++ Q+ ++YG + Sbjct: 113 TVDWIVLGDVKVDLAAGQAIREGSIVDLSRREWALLRALLQSPGRVLSLEQLRDSLYG-Y 171 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 VE N V H+ LR+ KLG D V++ R +G+ + Sbjct: 172 SLDVESNAVNVHVHHLRR----KLGSDMVETVRGVGFRL 206 >gi|238922318|ref|YP_002935832.1| two-component system, OmpR family, response regulator [Eubacterium eligens ATCC 27750] gi|238873990|gb|ACR73698.1| two-component system, OmpR family, response regulator [Eubacterium eligens ATCC 27750] Length = 233 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 7/183 (3%) Query: 39 QSSAREDVSAIEAFL-IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 Q A DV ++ +L G G ++ R IR H +I ++ + + D G DD Sbjct: 50 QEEATIDVFLLDVYLPDGNG---FDVCRKIREHGSQIIIFLTSCDDEDSIIKGLDCGGDD 106 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRI 156 V KP E+++R+ A RR+ + + G + V F + ++ P E + Sbjct: 107 YVVKPFRVAELVSRIMANVRRISGGTDIYKDGTLTVDFRNKSVTHADKQICVSPT-EFHV 165 Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRF 215 LE L+ N+G V + F ++ + VE+N + +S+L+ KL N+ G +++ R Sbjct: 166 LEILINNKGLIVRRDTFFQKMWDRYGTFVEDNTLTVTVSRLKTKLGNREDGRAYIETIRG 225 Query: 216 LGY 218 +GY Sbjct: 226 IGY 228 >gi|258404600|ref|YP_003197342.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] gi|257796827|gb|ACV67764.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] Length = 230 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 91/202 (45%), Gaps = 12/202 (5%) Query: 28 GFNSLEFEEWLQ-----SSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDY 81 GF L E Q SSA D+ ++ L GK G +V R + +P+I ++ Sbjct: 27 GFRVLTAENGFQALDVLSSAPVDLVVLDLMLPGKDGLEVCRELRSRESTKHLPVIMLTAK 86 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGPIRVFSDGR 138 + + G DD V KP RE+L R A+ RR K E+G +RV Sbjct: 87 GDEVDRIVGLELGADDYVVKPFSPRELLLRAKAVMRRGKPQPEEETLWESGGLRVDFGTY 146 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 V GE L E R+L +L+ +RGK + Q+ + ++G E V++H+ +LR Sbjct: 147 KVTVDGEDRELTATEFRLLVHLIRSRGKVQTRDQLLNKVWGYEFEGYART-VDTHVRRLR 205 Query: 199 KKLRNKLGFDPVDSKRFLGYSI 220 K+ V++ R +GY + Sbjct: 206 HKIEPYAAI--VETVRGVGYRL 225 >gi|187932998|ref|YP_001885393.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum B str. Eklund 17B] gi|187721151|gb|ACD22372.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum B str. Eklund 17B] Length = 234 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 5/112 (4%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 G DD + KP RE+LARV A+ RR + NN E+ +++ D + + + L Sbjct: 99 GADDYITKPFSVRELLARVKAVLRRTYPGADIENNSYESKGLKIDFDRHEVFINNQKVEL 158 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +E +L+ L+ N+GK + + + I+G ++ E V+ HI LRKK+ Sbjct: 159 TLKEFDLLKILIKNKGKILQRETLLDKIWG-YEYIGETRTVDVHIRYLRKKI 209 >gi|188996802|ref|YP_001931053.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] gi|188931869|gb|ACD66499.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] Length = 214 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 100/201 (49%), Gaps = 8/201 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKV 60 ++I+D L+ + ++G+ L N + EE L S + DV ++ L KGE + Sbjct: 4 LIIEDDLLLGESLKDYLENNGIECLWISNERKLEEAL-SLSEFDVIVLDLILRYSKGEDI 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R + + P++ ++ S++ F+ G DD + KP +E L R+ A+ +R Sbjct: 63 LRNLR--NKNVKTPILIMTAKNSIKDKETCFNLGADDYIIKPFDPKEFLLRIKALSKRAH 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + G + + + + G+ L + +L YL+ NRGK V+ I + ++ Sbjct: 121 LP-EKIKIGDVEIDLENQIVLKDGKEVKLTKTAWTLLYYLIKNRGKVVSNENILNYVW-- 177 Query: 181 FDEAVEENVVESHISKLRKKL 201 D+AV + V+ ++I +LRK L Sbjct: 178 HDKAVGDEVIRAYIKELRKIL 198 >gi|170701551|ref|ZP_02892501.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170133545|gb|EDT01923.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 224 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 10/167 (5%) Query: 41 SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 SA D ++ L G G +L R + + P++ +S + + +G DD + Sbjct: 42 SASYDAITLDRMLPGADGLAILTAMRTVGIDT--PVLMLSALGDVDERIRGLRAGGDDYL 99 Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERR 155 KP E+ AR+ + RR + S +T G + + R + PL E R Sbjct: 100 TKPFDSGELSARIEVLLRRRQASGVPQQTLLTVGALELDLISRCARRGVDEIPLLPTEFR 159 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201 +LE++M N G+ + +T +F A++G FD N+++ H+ +LRKK+ Sbjct: 160 VLEFMMRNAGQTITRTMLFEAVWGYHFDPGT--NLIDVHMGRLRKKI 204 >gi|332074558|gb|EGI85032.1| response regulator [Streptococcus pneumoniae GA17545] Length = 234 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 11/153 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ + IR S VP++ +S S + + G DD V KP +RE+ ARV A+ RR Sbjct: 61 LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 120 Query: 119 -LKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + V A++ P + + D + GE L RE +L +L ++ G+ + + Sbjct: 121 PMPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITR 180 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ + +LR+K+ + Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 212 >gi|317063635|ref|ZP_07928120.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] gi|313689311|gb|EFS26146.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] Length = 233 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 13/147 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +IIR S +P+I ++ + ++ D G DD + KP E+ AR+ R+ + Sbjct: 67 EVCKIIRKTSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARI-----RVAL 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-------PLPRRERRILEYLMANRGKRVAKTQIF 174 N + ++ D ++ + L + E + YL+ N+ V++ +I Sbjct: 122 RNKSNFSNTDFLYYDILKLNLKTNILYKDEKEISLTKTEYNLFYYLLLNKELVVSREKIL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 + ++G +D EE +V+ +I+ LRKK+ Sbjct: 182 NEVWG-YDYMGEEKIVDVYINALRKKI 207 >gi|257469388|ref|ZP_05633481.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] Length = 228 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 72/147 (48%), Gaps = 13/147 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +IIR S +P+I ++ + ++ D G DD + KP E+ AR+ R+ + Sbjct: 62 EVCKIIRKTSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARI-----RVAL 116 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-------PLPRRERRILEYLMANRGKRVAKTQIF 174 N + ++ D ++ + L + E + YL+ N+ V++ +I Sbjct: 117 RNKSNFSNTDFLYYDILKLNLKTNILYKDEKEISLTKTEYNLFYYLLLNKELVVSREKIL 176 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 + ++G +D EE +V+ +I+ LRKK+ Sbjct: 177 NEVWG-YDYMGEEKIVDVYINALRKKI 202 >gi|291287945|ref|YP_003504761.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290885105|gb|ADD68805.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 224 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 3/163 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R IR S +P+I ++ L + G DD + KP RE++AR+ A+ RR Sbjct: 62 LDICRGIRKKSALPIIMLTAKVEEIDRLIGLELGADDYICKPFSPREVVARLKAVLRRTS 121 Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G + ++ + GE L R E +L + + G +++ + S+++ Sbjct: 122 PEKPVQSISIGSLTIYPELYKVSAGGEDIVLTRSEFMLLLTMAKHPGVVYSRSDLISSVH 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G E E V+SHI LRKKL + + + + +GY I+ Sbjct: 182 GYEFEGYERT-VDSHIKNLRKKLSEFVNDNIIHTIYGVGYKIE 223 >gi|172035733|ref|YP_001802234.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142] gi|171697187|gb|ACB50168.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142] Length = 225 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 12/162 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ + S+VP+I ++ + + D+G DD + KP + E+LARV A RR N Sbjct: 68 RLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRR-----N 122 Query: 125 RAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + F D EVF L +E +LEYLM++ + +++ QI ++ Sbjct: 123 HEEDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D + N++E ++ LR KL + + + R +GY + Sbjct: 183 G-YDFMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVL 223 >gi|170684107|ref|YP_001746856.1| DNA-binding response regulator CreB [Escherichia coli SMS-3-5] gi|218703147|ref|YP_002410776.1| DNA-binding response regulator CreB [Escherichia coli IAI39] gi|170521825|gb|ACB20003.1| transcriptional regulatory protein CreB [Escherichia coli SMS-3-5] gi|218373133|emb|CAR21027.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli IAI39] Length = 229 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ V + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 + + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ ++ Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|294102665|ref|YP_003554523.1| two component transcriptional regulator, winged helix family [Aminobacterium colombiense DSM 12261] gi|293617645|gb|ADE57799.1| two component transcriptional regulator, winged helix family [Aminobacterium colombiense DSM 12261] Length = 232 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDS---GVDDVVNKPIHHREILARVAAIYRR 118 E+ R ++++ + LI I + + +D + G DD + KP E++ARV + RR Sbjct: 64 EVCRRLKSNKETALIPIIMLTARRDEMDVVEGLELGADDYMKKPFSLAELVARVGVLLRR 123 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +++ + G + + + + ++G L E R+LE L G+ V++ ++ Sbjct: 124 TRMTEETRQITNGDLVMDIENQWVMLRGNSLDLSPTEFRLLELLAHRFGRTVSRDELLGR 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 I+ L+ + V+ HIS+LRKKL NK + + R GY I W Sbjct: 184 IWNLY--GGDTRTVDVHISRLRKKLDDNKHPALLIQTLRGRGYRITW 228 >gi|294627904|ref|ZP_06706483.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666844|ref|ZP_06732076.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292597818|gb|EFF41976.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603361|gb|EFF46780.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 229 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 3/132 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 ++P+I ++ + ++GVDD V KP RE+LAR+ A+ RR + + Sbjct: 76 EIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTREDDEDGSVAVG 135 Query: 132 RVFSDGRDPEVQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 ++ DG V P+P E R+L + M + + +TQ+ ++G VEE Sbjct: 136 KLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVWG-GSVYVEERT 194 Query: 190 VESHISKLRKKL 201 ++ HI +LRK L Sbjct: 195 IDVHIRRLRKTL 206 >gi|161353605|ref|NP_460069.2| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993660|ref|ZP_02574754.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168264141|ref|ZP_02686114.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197263478|ref|ZP_03163552.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241733|gb|EDY24353.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328288|gb|EDZ15052.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205347397|gb|EDZ34028.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|267992849|gb|ACY87734.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312912084|dbj|BAJ36058.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223711|gb|EFX48774.1| Putative two-component system response regulator YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129363|gb|ADX16793.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 226 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 98/214 (45%), Gaps = 14/214 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + L + GY+ + DG + L + +E S I ++ G ++ R + Sbjct: 18 QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 66 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ + R Sbjct: 67 RTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPAFTRLT 126 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 + + + + G+ L R+E +L L + G+ V +T I S ++G+ FD E Sbjct: 127 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 184 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N V+ I +LR K+ + + + R +GY + Sbjct: 185 TNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218 >gi|126733777|ref|ZP_01749524.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] gi|126716643|gb|EBA13507.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] Length = 226 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 10/163 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R S VP++ ++ + + G DD V+KP RE++ARV AI +R Sbjct: 59 LEVCRALRKTSDVPILFLTARADEIDRVVGLELGADDYVSKPFSPRELVARVRAILKR-- 116 Query: 121 VSNNR-AETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 SN AE +R DP V+ L RE +LE L+A +++ Q+ Sbjct: 117 -SNGEVAEQVVMRRGVISVDPARHLCHVKDATVTLTSREMDLLERLIARPDHVMSRPQLV 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217 AIYG + V + ++SH+ LR KL D +++ +G Sbjct: 176 DAIYG-TNVNVSDRTMDSHLRNLRSKLGKAGCADAIETVHGVG 217 >gi|6318168|emb|CAB60254.1| MrsR2 protein [Bacillus sp. HIL-Y85/54728] Length = 240 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 14/144 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR+H+ VP++ ++ + L F G DD + KP + EI+ARV A +LK + + Sbjct: 72 IRSHTNVPILFLTAKTTDLDKLQGFSFGGDDYITKPFNPLEIVARVKA---QLKRTTQLS 128 Query: 127 ETGPIRVFSDGR----DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + P++ D DP V G P +E ++L Y + + ++K QI+ + Sbjct: 129 SSYPLKQVYDYEYFKIDPNTGRLVVNGTRIDCPAQEMKLLIYFCEHPNQILSKHQIYKDV 188 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G F ++ V H+ +LR+KL Sbjct: 189 WGEFYGG--DSTVMVHVRRLREKL 210 >gi|57866897|ref|YP_188567.1| DNA-binding response regulator ArlR [Staphylococcus epidermidis RP62A] gi|242242696|ref|ZP_04797141.1| DNA-binding response regulator [Staphylococcus epidermidis W23144] gi|81674611|sp|Q5HPC3|ARLR_STAEQ RecName: Full=Response regulator ArlR gi|57637555|gb|AAW54343.1| DNA-binding response regulator ArlR [Staphylococcus epidermidis RP62A] gi|242233832|gb|EES36144.1| DNA-binding response regulator [Staphylococcus epidermidis W23144] gi|319400771|gb|EFV88990.1| response regulator [Staphylococcus epidermidis FRI909] Length = 219 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 2/130 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 D G DD + KP E+LAR+ A+ RR + + + I + D V G L Sbjct: 91 LDYGADDYIVKPFDIEELLARIRAVLRR-QPDKDVLDINGIIIDKDAFKVTVNGHQLELT 149 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 + E +L L NR + + QI ++G ++ VE NVV+ +I LR KL+ + Sbjct: 150 KTEYDLLYVLAENRNHVMQREQILDHVWG-YNSEVETNVVDVYIRYLRNKLKPFNKEKSI 208 Query: 211 DSKRFLGYSI 220 ++ R +GY I Sbjct: 209 ETVRGVGYVI 218 >gi|84578942|dbj|BAE72909.1| two-component response regulator mutated protein M3-f [Streptococcus pyogenes] Length = 228 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIPTVRGMGYVI 225 >gi|119774241|ref|YP_926981.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119766741|gb|ABL99311.1| response regulator receiver protein [Shewanella amazonensis SB2B] Length = 222 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 2/111 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 D+G DD V KP RE+ ARV A+ RRL A T ++V G G+ L Sbjct: 92 LDTGADDYVCKPYSARELTARVRAVLRRLDGKLTAAGT-SLKVDESGLSISFGGQTVVLT 150 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E R+ L + + +++QI +Y F + + V+SHI LRKKL Sbjct: 151 ALEFRLFNLLYSQPNRIYSRSQILDLLYSDF-RVLSDRTVDSHIRNLRKKL 200 >gi|315924292|ref|ZP_07920515.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315622363|gb|EFV02321.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 204 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 81/163 (49%), Gaps = 6/163 (3%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ + IR P++ ++ ++ + D G DD + KP +E+ AR+ A+ RR Sbjct: 42 LEILKEIRDRDITTPVLMLTAKGTVDDKVKGLDLGADDYLVKPFSAKELFARIRALSRRP 101 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + I + + + E + L +E +ILE L+ + + QI + Sbjct: 102 DNEIKGECIDFENISFNTKKNTLQTESEEYKLSVKEAKILEMLIKRPNQVFTREQILDRV 161 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G FD+ V EN +E ++ LRKKL + +D+ R +GY++ Sbjct: 162 WG-FDKEVNENNIEIYVHNLRKKLADTNV--KIDTIRGVGYTM 201 >gi|315648817|ref|ZP_07901912.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315275785|gb|EFU39137.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 239 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 19/165 (11%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----------VS 122 P+I ++ + + + G DD + KP E+LARV+A+ RR+ Sbjct: 71 TPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSGHVEEVKTPDQQ 130 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N G + ++ + + + G+ L +E +L YL G + + + + ++G FD Sbjct: 131 GNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRDDLMNVVWG-FD 189 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSIDWN 223 + V+ H+S LRKKL DP +DS R +GY + N Sbjct: 190 YIGGQRTVDVHVSSLRKKLE----LDPESVHIDSIRGVGYKLVVN 230 >gi|307704960|ref|ZP_07641848.1| response regulator [Streptococcus mitis SK597] gi|307709233|ref|ZP_07645692.1| response regulator [Streptococcus mitis SK564] gi|307620179|gb|EFN99296.1| response regulator [Streptococcus mitis SK564] gi|307621470|gb|EFO00519.1| response regulator [Streptococcus mitis SK597] Length = 235 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 12/154 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP+I +S S + + G DD V KP +RE+ ARV A+ RR Sbjct: 61 LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120 Query: 121 VSN--------NRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 +++ N+ + G + + D + GE L RE +L +L ++ G+ + Sbjct: 121 LASVDNQESDENKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ I +LR+K+ + Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 213 >gi|239831231|ref|ZP_04679560.1| Transcriptional regulatory protein pmrA [Ochrobactrum intermedium LMG 3301] gi|239823498|gb|EEQ95066.1| Transcriptional regulatory protein pmrA [Ochrobactrum intermedium LMG 3301] Length = 221 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D ++ DG G G +++ ++ E ++ + ++ L G G + Sbjct: 3 ILVVEDDTILLDGLTVGLGLAGFTVDAVSTCCDAEAALAAQNYNAVVLDLMLPDGSGLDI 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ R R + P++ ++ + + D+G DD V KP E+ ARV A+ RR Sbjct: 63 LKSMR--RGRDETPVLLLTARDQVPERIAGLDAGADDYVGKPFDLHELAARVRAVARRGA 120 Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N E + + GE L RRE IL LM +K+ + A+YG Sbjct: 121 GRANALLEWRGVELDPAEMSVRFHGEPVRLTRREFSILRTLMERPAATFSKSSLEEALYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E VE N VE HI LR+KLG D +++ R +GY + Sbjct: 181 -WQEEVESNAVEVHI----HHLRSKLGSDYIETVRGVGYRL 216 >gi|255280985|ref|ZP_05345540.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469] gi|255268433|gb|EET61638.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469] Length = 224 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 4/158 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+ P+I IS + + G DD + KP + A++ A+ RR Sbjct: 68 IRKISKAPVIFISSASDDMNIIMAVNYGADDFLAKPFELTVLTAKIQAVLRRTYDFAGQT 127 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + D +V L + E RIL LM N+G+ V++ I + ++ D Sbjct: 128 SILEHRGAVLNMDNTTLLYDDKVVELTKNEYRILRILMENKGRVVSRDTIMARLWET-DS 186 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++N + ++++LRKKL +D + +K+ +GY ++ Sbjct: 187 FIDDNTLTVNVTRLRKKLEQAGLYDYIVTKKGIGYLVE 224 >gi|110833027|ref|YP_691886.1| phosphate regulon transcriptional regulatory protein phoB [Alcanivorax borkumensis SK2] gi|110646138|emb|CAL15614.1| Phosphate regulon transcriptional regulatory protein phoB [Alcanivorax borkumensis SK2] Length = 234 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 11/154 (7%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 ++VP+I ++ + D G DD + KP RE+++R+ A+ RR +++ A Sbjct: 76 NEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAVLRR---ASSVAAEKA 132 Query: 131 IRVFSDGRDP---EVQGEVFPLPR--RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 I V DP + P+ E R+LE+ M+++ + ++TQ+ ++G + V Sbjct: 133 IEVEGLCLDPVSHRISANDSPVDMGPTEYRLLEFFMSHQERAYSRTQLLDQVWGA-NVYV 191 Query: 186 EENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 E+ ++ HI +LRK L G+D + + R GY Sbjct: 192 EDRTIDVHIRRLRKAL-APFGYDRFIQTVRGTGY 224 >gi|16079696|ref|NP_390520.1| two-component response regulator YrkQ [Bacillus subtilis subsp. subtilis str. 168] gi|221310574|ref|ZP_03592421.1| hypothetical protein Bsubs1_14456 [Bacillus subtilis subsp. subtilis str. 168] gi|221314898|ref|ZP_03596703.1| hypothetical protein BsubsN3_14377 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319820|ref|ZP_03601114.1| hypothetical protein BsubsJ_14293 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324099|ref|ZP_03605393.1| hypothetical protein BsubsS_14427 [Bacillus subtilis subsp. subtilis str. SMY] gi|1731135|sp|P54443|YRKP_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yrkP gi|1303715|dbj|BAA12371.1| YrkP [Bacillus subtilis] gi|2635088|emb|CAB14584.1| two-component response regulator [YrkQ] [Bacillus subtilis subsp. subtilis str. 168] Length = 231 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 7/150 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E + IR S VP++ ++ S + +G DD + KP E+ ARV A RR Sbjct: 61 IETCQHIRKSSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYT 120 Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + E G +RV + + + + L E RIL+ LM R K + I Sbjct: 121 IYQEKKEQEETFLIGGKLRVSEEFNEVWKEEKQIKLSDLEYRILKLLMNKRNKIFSAQNI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + +++G N V HI KLR K+ + Sbjct: 181 YESVWGQPYFYCSNNTVMVHIRKLRSKIED 210 >gi|83749689|ref|ZP_00946669.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551] gi|207724268|ref|YP_002254665.1| two component response regulator protein [Ralstonia solanacearum MolK2] gi|207739009|ref|YP_002257402.1| two component response regulator protein [Ralstonia solanacearum IPO1609] gi|300697089|ref|YP_003747750.1| DNA-binding response regulator in two-component regulatory system with BasS (basR) [Ralstonia solanacearum CFBP2957] gi|83723651|gb|EAP70849.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551] gi|206589484|emb|CAQ36445.1| two component response regulator protein [Ralstonia solanacearum MolK2] gi|206592380|emb|CAQ59286.1| two component response regulator protein [Ralstonia solanacearum IPO1609] gi|299073813|emb|CBJ53334.1| Putative DNA-binding response regulator in two-component regulatory system with BasS (basR) [Ralstonia solanacearum CFBP2957] Length = 221 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 14/203 (6%) Query: 28 GFNS------LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 G+N+ ++ ++W+ S+ + + G+G LE R A S VP+I S Sbjct: 25 GYNTTWVRRLMDAQKWMTSNTFDAIVLDLGLPDGEGHVFLEELRA--AQSDVPVIIASAR 82 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDP 140 +L L D G DD + KP E++AR+ A+ RR S NR G + V + Sbjct: 83 DALSERLKGLDEGADDFLVKPFPVDELVARLRAVLRRHAGQSTNRWSVGSLVVEPSQKRV 142 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 G V L RE ++L L+ + V + + A+Y + V N +E I Sbjct: 143 TQDGNVVELTPREYQLLFELVRRAHRWVTRETLMDALYREGNR-VSANALEVVI----HH 197 Query: 201 LRNKLGFDPVDSKRFLGYSIDWN 223 LR KLG + + R +GY I N Sbjct: 198 LRGKLGEGVIQTIRGVGYMIGGN 220 >gi|328913554|gb|AEB65150.1| Uncharacterized transcriptional regulatory protein [Bacillus amyloliquefaciens LL3] Length = 250 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 3/160 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ +R+ + +P++ ++ + F SG DD + KP E+ ARV A+ +R + Sbjct: 86 FEVSEAVRSFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYR 145 Query: 121 VSNNRAET-GPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + T G + + R G LPRRE +L L K ++ + I+ Sbjct: 146 ITAEKLLTIGTVTLDKQSRTVTRGGGSGMTLPRREFELLFKLAGYPNKTFSREHLIEDIW 205 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G FD +E V+ HI +LR++ K + + R LGY Sbjct: 206 G-FDYEGDERTVDVHIKRLRERFPEKDYPFAIHTVRGLGY 244 >gi|225386953|ref|ZP_03756717.1| hypothetical protein CLOSTASPAR_00703 [Clostridium asparagiforme DSM 15981] gi|225046965|gb|EEG57211.1| hypothetical protein CLOSTASPAR_00703 [Clostridium asparagiforme DSM 15981] Length = 231 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 98/211 (46%), Gaps = 14/211 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V DD+ +V+ I L G+ ++ ++ E E+L+S D+ I+ + G Sbjct: 4 ILVCDDDKQIVEAIDIYLTGEGFEVIKAYDGYEVLEYLESH-DADLLIIDVMMPGLDGIR 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L +R +S +P+I +S + + G DD + KP + E++ARV + RR Sbjct: 63 TTLK--VRENSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYT 120 Query: 121 VSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N + G +++ D ++ V G+ L E IL L+ N GK + + Sbjct: 121 QLGNLNQQPDGQVYKCGGLQINDDNKEVTVDGDPIKLTPIEYNILLLLVKNAGKVFSIDE 180 Query: 173 IFSAIYGLFDEAV-EENVVESHISKLRKKLR 202 I+ I+ +EA+ +N V HI +R+K+ Sbjct: 181 IYEQIWN--EEAIGADNTVAVHIRHIREKIE 209 >gi|254425192|ref|ZP_05038910.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196192681|gb|EDX87645.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 250 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 88/164 (53%), Gaps = 9/164 (5%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ + +RA + P+I ++D ++ + ++G +D ++ P E+LAR+ A L Sbjct: 82 LEICQRLRASQGEAPIILLTDQDNVNQRIAGLEAGANDCLSLPCDREELLARIHA--NLL 139 Query: 120 KVSNNRAETGPIR---VFSDGRDPEV-QGEVF-PLPRRERRILEYLMANRGKRVAKTQIF 174 + ++R E+ +R V + R EV +G+ F L +E +LEYLM + + + ++QI Sbjct: 140 RNQSSRLESAVLRCADVQLNRRTREVFRGDRFIRLTAKEFDLLEYLMCHYFQVLTRSQIL 199 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G ++ N++E +I LR+KL V + R +GY Sbjct: 200 ENVWG-YEYMGSSNIIEVYIRYLRRKLEANSEIRLVHTVRSVGY 242 >gi|160900855|ref|YP_001566437.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160366439|gb|ABX38052.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 239 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 8/160 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNN 124 +A + VPL+ +S + + G DD + KP RE++AR A+ R RL+ + Sbjct: 77 QAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLRRVQRLQPAPT 136 Query: 125 RAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +FS G+ +QG L RRE ++L L+ G+ +++ + +I+G Sbjct: 137 ASAAPADALFSIDPQGQRVRMQGVPLELTRREYQLLRCLLERPGRILSREFLLDSIWG-Q 195 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 D + V++H+ LR KLR + D + + R +GYS+ Sbjct: 196 DSDSTDRTVDTHVKTLRAKLRAQAPQQDFITTHRGMGYSL 235 >gi|52144660|ref|YP_082168.1| response regulator [Bacillus cereus E33L] gi|51978129|gb|AAU19679.1| response regulator [Bacillus cereus E33L] Length = 225 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQHAQIQYHGILWDETRHFVSVDNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDHHLKTVYGVGYRW 220 >gi|332669166|ref|YP_004452174.1| winged helix family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338204|gb|AEE44787.1| two component transcriptional regulator, winged helix family [Cellulomonas fimi ATCC 484] Length = 242 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 11/157 (7%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAE 127 VP++ ++ + G DD V KP E++AR+ AI RR L S++ Sbjct: 81 HVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRRTSAGLDDSSSVLR 140 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 + + D + G L E ++L YL+ N G+ ++K QI ++ +D + Sbjct: 141 YADLELDEDSHEVTRAGHAVELSPTEFKLLRYLILNPGRVLSKAQILDHVWQ-YDWGGDA 199 Query: 188 NVVESHISKLRKKLRNKLGFDP------VDSKRFLGY 218 N+VES+IS LR+K+ D + +KR +GY Sbjct: 200 NIVESYISYLRRKIDQLADADGNRLPPLIHTKRGVGY 236 >gi|330882054|gb|EGH16203.1| DNA-binding response regulator QseB [Pseudomonas syringae pv. glycinea str. race 4] Length = 149 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 12/135 (8%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEV 146 D+G DD + KP E+ ARV A+ RR S RA E I + + QG Sbjct: 20 LDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQPLLEHAGISLDPASQQVSFQGSE 76 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 P+ E ++L LM GK V + ++ + +YG D+ VE N +E I LRKKL +L Sbjct: 77 VPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYGWQDK-VESNTLEVLIHNLRKKLSTEL- 134 Query: 207 FDPVDSKRFLGYSID 221 + + R +GY ++ Sbjct: 135 ---IRTVRGVGYLLE 146 >gi|323694714|ref|ZP_08108874.1| KDP operon transcriptional regulatory protein KdpE [Clostridium symbiosum WAL-14673] gi|323501229|gb|EGB17131.1| KDP operon transcriptional regulatory protein KdpE [Clostridium symbiosum WAL-14673] Length = 232 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 16/152 (10%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ R IR+ S+ P+I +S +D D+G DD + KP E+LAR+ +RRL Sbjct: 63 IDIIRKIRSWSKTPIIVLSARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTFRRLN 122 Query: 121 VSNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + A P VF++G + G+ L E ++L L N GK + T Sbjct: 123 DAGDSA-AAPASVFTNGEMRLDYAAGTVTMSGQELHLTPIEYKLLCLLAKNVGKVLTHTY 181 Query: 173 IFSAIYGLFDEAVEENVVES---HISKLRKKL 201 I I+G + +N V S ++ LRKK+ Sbjct: 182 ITKKIWG----SAWDNDVASLRVFMATLRKKI 209 >gi|260430664|ref|ZP_05784636.1| phosphate regulon transcriptional regulatory protein PhoB [Silicibacter lacuscaerulensis ITI-1157] gi|260418105|gb|EEX11363.1| phosphate regulon transcriptional regulatory protein PhoB [Silicibacter lacuscaerulensis ITI-1157] Length = 228 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 9/202 (4%) Query: 27 EGFNSLEFEE----WLQ-SSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISD 80 EGF ++ E LQ A D+ ++ L G G ++ ++ A +P+I +S Sbjct: 27 EGFTVVQAENGDEALLQIKEAPPDLILLDWMLPGVSGIEICRQLKMTAATRAIPVIMLSA 86 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSDGR 138 + ++G DD V KP E++ARV + +RR + + R E I + ++ Sbjct: 87 RSDEVDKVRGLETGADDYVTKPYSVIELMARVKSQFRRTRPAAVGERLEYDDIVLDAETH 146 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 G+ L E R+L M G+ + Q+ ++G D V+ V+ HI +LR Sbjct: 147 RVTRAGQDIKLGPTEFRLLSTFMEKPGRVWNREQLLDRVWG-RDIYVDTRTVDVHIGRLR 205 Query: 199 KKLRNKLGFDPVDSKRFLGYSI 220 K L + G DP+ + R GY++ Sbjct: 206 KALTVRGGDDPIRTVRGAGYAL 227 >gi|229030926|ref|ZP_04186945.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228730420|gb|EEL81381.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 225 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ N Sbjct: 69 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLNADM 128 Query: 127 ET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 188 DERTVDVHVKRLRDRFSKRTADFQITTVRGLGYKLE 223 >gi|160894183|ref|ZP_02074961.1| hypothetical protein CLOL250_01737 [Clostridium sp. L2-50] gi|156864216|gb|EDO57647.1| hypothetical protein CLOL250_01737 [Clostridium sp. L2-50] Length = 220 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 82/154 (53%), Gaps = 5/154 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S +P+I ++ S + G DD + KP + +L R+AA+ +R++ S N A Sbjct: 67 IRKESDIPVIMVTSRTSEMDEVLSMSYGADDYITKPYNPTILLLRIAAVLKRMEGSQNAA 126 Query: 127 ETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 V FS G + E L + E I + L++++ K V++ +I + ++ +E V Sbjct: 127 SYRGAEVNFSKGTIRLGEKEQV-LTKNEMIIFQRLLSSKDKIVSRDEIMTDLWD-NEEYV 184 Query: 186 EENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 +N + +IS+LR KL +LG D +++++ GY Sbjct: 185 NDNALTVNISRLRTKLA-ELGLPDAIETRKKQGY 217 >gi|148273675|ref|YP_001223236.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831605|emb|CAN02573.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 226 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 8/163 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLK 120 E+ R IR S VP+I ++ S + + G DD V KP RE+LAR+ A+ RR++ Sbjct: 62 EVCREIRTRSAVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARIRAVLRRRVE 121 Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V + N E G +R+ + EV G +P +E +LE L+ N G+ + + Q+ + Sbjct: 122 VDDEPLNVLEVGSVRMDVERHTVEVDGREIAMPLKEFELLELLLRNAGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGY 218 +G D + ++ HI ++R K+ + DPV + R LGY Sbjct: 182 WG-SDYFGDTKTLDVHIKRIRSKIEREPS-DPVLLVTVRGLGY 222 >gi|15596834|ref|NP_250328.1| two-component response regulator KdpE [Pseudomonas aeruginosa PAO1] gi|107101068|ref|ZP_01364986.1| hypothetical protein PaerPA_01002099 [Pseudomonas aeruginosa PACS2] gi|218892408|ref|YP_002441275.1| two-component response regulator KdpE [Pseudomonas aeruginosa LESB58] gi|254234736|ref|ZP_04928059.1| two-component response regulator KdpE [Pseudomonas aeruginosa C3719] gi|254239983|ref|ZP_04933305.1| two-component response regulator KdpE [Pseudomonas aeruginosa 2192] gi|9947605|gb|AAG05026.1|AE004591_6 two-component response regulator KdpE [Pseudomonas aeruginosa PAO1] gi|126166667|gb|EAZ52178.1| two-component response regulator KdpE [Pseudomonas aeruginosa C3719] gi|126193361|gb|EAZ57424.1| two-component response regulator KdpE [Pseudomonas aeruginosa 2192] gi|218772634|emb|CAW28417.1| two-component response regulator KdpE [Pseudomonas aeruginosa LESB58] Length = 230 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 25/225 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF---EEWLQSSA--REDVSAIEAFLIGK 56 +LIDD ++ F ++ +G+ LE EE L +A R D+ ++ L + Sbjct: 8 ILLIDDEPQIRK-----FLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGLPDR 62 Query: 57 -GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ +L R +R SQVP++ +S S + D G +D V KP +E LARV + Sbjct: 63 DGQDIL---RDLREWSQVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVL 119 Query: 116 YRRLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R+ + GP++V R ++G L R+E +L L + G+ V + Q Sbjct: 120 LRQAAQGESPEASVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQ 179 Query: 173 IFSAIYGLFDEAVEENVVESH-ISKLRKKLRNKLGFDPVDSKRFL 216 + I+G +V ++H + + LR KLG DP S RFL Sbjct: 180 LLKDIWG------PTHVEDTHYLRVVVGHLRQKLGDDPA-SPRFL 217 >gi|319893564|ref|YP_004150439.1| Response regulator SaeR [Staphylococcus pseudintermedius HKU10-03] gi|317163260|gb|ADV06803.1| Response regulator SaeR [Staphylococcus pseudintermedius HKU10-03] Length = 228 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 6/140 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----T 128 +P + ++ S Q T+ G DD V KP RE++ RV + R+ V++ + Sbjct: 73 IPYVYLTAKTSEQDTIFGLMLGADDYVKKPFSPRELVIRVKNLMNRVNVTSPSTQETIHC 132 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + + + E++GEV P +E +L Y + ++KT + ++G ++ + N Sbjct: 133 GRLVLNNLNKTVELEGEVIPFRIKEFELLWYFANHESVALSKTDLLEQVWG-YEYYEDMN 191 Query: 189 VVESHISKLRKKLRNKLGFD 208 + H+ ++R+KL K G+D Sbjct: 192 TLNVHVHRIREKLE-KYGYD 210 >gi|312898268|ref|ZP_07757659.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] gi|310620765|gb|EFQ04334.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] Length = 229 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 9/172 (5%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L+S+ E+ + ++ G+ ++ R +R +P++ IS + G DD Sbjct: 38 LESALTENYDLLLVDVMLPGKDGFQIVREVRKKKDIPILMISAKREDIDKIRGLGLGADD 97 Query: 98 VVNKPIHHREILARV---AAIYRRLKVSNNRA-----ETGPIRVFSDGRDPEVQGEVFPL 149 ++KP E++ARV +A Y RL +++ E G + + +G ++G+ L Sbjct: 98 YISKPFSPSELVARVKAHSARYERLIAKADKSLASFIEVGSLEIQPEGHRVFIRGKEISL 157 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +E +L +L NRG +K +F ++GL D + V H+++LR+KL Sbjct: 158 THKEFELLLFLARNRGIVFSKDALFERVWGL-DAVGDTATVMVHVNRLREKL 208 >gi|331681384|ref|ZP_08382021.1| transcriptional regulatory protein CreB [Escherichia coli H299] gi|331081605|gb|EGI52766.1| transcriptional regulatory protein CreB [Escherichia coli H299] Length = 229 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ V + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 + + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ ++ Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|257469073|ref|ZP_05633167.1| DNA-binding response regulator [Fusobacterium ulcerans ATCC 49185] gi|317063319|ref|ZP_07927804.1| two-component system response regulator [Fusobacterium ulcerans ATCC 49185] gi|313688995|gb|EFS25830.1| two-component system response regulator [Fusobacterium ulcerans ATCC 49185] Length = 221 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 20/202 (9%) Query: 35 EEWLQSSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPS 83 E +L A + +A+E F + +L LP++ IR S +P+I ++ S Sbjct: 25 ESFLTYKALDGETALEMFYEHNPDLILLDINLPKMNGWEVCQNIRKESNIPIIMMTARDS 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE-- 141 L G DD + KP + + ++ + LK+ N + F D R E Sbjct: 85 EIDELKGLSIGADDYITKPFSLKVLNIKIK---KMLKIDENSSYKFNNLSF-DFRSGELI 140 Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 V E L RRE + LEYL+ N+G ++ + + ++G FD ++ VV++ + +LRKKL Sbjct: 141 VNSESIELTRREIQFLEYLIKNKGIIFSRDVLLNEVWG-FDFEGDDRVVDTLVKRLRKKL 199 Query: 202 RNKLGFDPVDSKRFLGYSIDWN 223 + D + + R +GY D N Sbjct: 200 GDY--SDMIKTVRGMGYIFDEN 219 >gi|255325465|ref|ZP_05366569.1| transcriptional activator protein CopR [Corynebacterium tuberculostearicum SK141] gi|255297551|gb|EET76864.1| transcriptional activator protein CopR [Corynebacterium tuberculostearicum SK141] Length = 232 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 12/168 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R+ P++ ++ + + D+G DD + KP E+LARV ++ RR Sbjct: 60 LEVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRA 119 Query: 120 KVSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + AE P+ + +D R+ G L R E +L+ LM N K +++ Sbjct: 120 SADSIAAE-APVESKLSFEDLELDADTREVSRGGRAISLTRTEFALLQLLMENPRKVLSR 178 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++I ++G +D N +E +I LRKK + + + R +GY Sbjct: 179 SKILEEVWG-YDFPTSGNALEVYIGYLRKKTEGESDARLIHTVRGVGY 225 >gi|251790853|ref|YP_003005574.1| winged helix family two component transcriptional regulator [Dickeya zeae Ech1591] gi|247539474|gb|ACT08095.1| two component transcriptional regulator, winged helix family [Dickeya zeae Ech1591] Length = 232 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 8/167 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ R +R + +P+I ++ + + G DD V KP + RE++AR+ A+ RR + Sbjct: 66 IDVLRQVRRNRSIPIIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYE 125 Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++E G + + R E +G+ F L E +LE L+ + + V K ++ Sbjct: 126 DKAEKSEDAGTINYGELVISPSTRSSEWRGKAFDLTASEFNLLELLIRSSERVVTKDELS 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 G EA + + V+ HIS +R+KL G +++ R +GY I Sbjct: 186 EKCLGRRREAYDRS-VDVHISNIRQKLAALDGCSLTIETVRSVGYRI 231 >gi|269836782|ref|YP_003319010.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269786045|gb|ACZ38188.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 224 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 19/172 (11%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R +RA + P++ ++ +++ + ++G DD + KP E++ARV A+ RR Sbjct: 60 VEICRHLRAARVRTPILMLTARGAVEDRVTGLNAGADDYLVKPFAMAELVARVNALLRR- 118 Query: 120 KVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R GP + + G+V L +E +LEYLM N G+ + ++ Sbjct: 119 ----ARGTDGPPTILQVADLTLDLLRHEARRGGQVIELTPKEFALLEYLMRNPGRALTRS 174 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221 QI ++ +D NVV+ +I LR K+ GFD + + R +GY I+ Sbjct: 175 QIIDRVWQ-YDLDSLSNVVDIYIHYLRDKIDR--GFDRPLIKTVRGVGYKIE 223 >gi|271970059|ref|YP_003344255.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513234|gb|ACZ91512.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 235 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 13/158 (8%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 + P++ ++ + + + +G DD V KP E++AR+ A+ RR + A P Sbjct: 77 TDTPVVFLTARDATEDKIRGLTAGGDDYVTKPFSLEEVVARIRAVLRRTGAGDLPARP-P 135 Query: 131 IRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 F+D E EV+ L E ++L Y MAN G+ ++K QI ++ +D Sbjct: 136 RLTFADIELDEESHEVWRRGRAVALSPTEFKLLRYFMANAGRVLSKAQILDHVWD-YDFR 194 Query: 185 VEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 + +VES++S LR+K+ N DP + + R +GY + Sbjct: 195 GDVGIVESYVSVLRRKIDNA---DPRLIHTLRGVGYVL 229 >gi|256371018|ref|YP_003108842.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] gi|256007602|gb|ACU53169.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] Length = 242 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 19/213 (8%) Query: 23 GVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGIS 79 G++ EGF ++ + EE L S I ++ L++ R IR S VP+I ++ Sbjct: 29 GLTREGFETIVANDGEEALALSRSHHPDLILLDVMLPRLSGLDVCRTIRQESSVPIIMVT 88 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNRAETGPIRV 133 T+ + G DD V KP E++AR+ A RR K + E+ I V Sbjct: 89 ARSGELDTVLGLELGADDYVTKPFRMSELVARIRAQMRRTKHQGQAQAAEEILESHGITV 148 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 + D +V+G LP +E +L + N G+ + + I ++G D + ++ H Sbjct: 149 YVDRHQVDVRGTEVRLPPKEFDLLLLFLRNPGRVLTRDLILDRVWG-SDYYGDTKTLDVH 207 Query: 194 ISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221 + K+LR+K+ DP + + R +GY ++ Sbjct: 208 V----KRLRSKIEPDPNNPSIIATVRGVGYRLE 236 >gi|332799755|ref|YP_004461254.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332697490|gb|AEE91947.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 228 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/229 (24%), Positives = 106/229 (46%), Gaps = 13/229 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 + +L DD +L+ DG L G L+ ++ + + + D+ ++ L G G Sbjct: 4 ILLLEDDLSLI-DGLSRLLKRQGFELDIARTVREANTIWADGKYDLLILDVSLPDGSG-- 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 E+ + +R S+VP+I ++ + D G DD + KP +++R+ A+ RR+ Sbjct: 61 -FEVCQKVRQVSKVPIIFLTASDEEMNIVTGLDIGGDDYITKPFKLGVLISRINALLRRV 119 Query: 120 K---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K ++ + I+V G++ L E R+L LM N ++K +I Sbjct: 120 KNFGTADTEIISNGIKVLLLQGQVYKDGQLLDLTTAEYRLLCLLMQNPNIILSKEKILDK 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223 ++ V++N + +I +LR K+ N G DP + + R +GY WN Sbjct: 180 LWDGEGSYVDDNTLAVYIRRLRMKIENNPG-DPQMLLTVRGMGYK--WN 225 >gi|297571220|ref|YP_003696994.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] gi|296931567|gb|ADH92375.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] Length = 228 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 90/196 (45%), Gaps = 13/196 (6%) Query: 36 EWLQSSAREDVSAI------EAFLIG---KGEKVLELPRIIRAHSQVPLIGISDYPSLQT 86 EW+ + + E+ A+ E L+ G ++L +RA S P++ +S + Sbjct: 27 EWIGAGSAEEARAVLQERSVELILLDVMLPGASGIDLCEAVRASSSTPVVLLSALGDEED 86 Query: 87 TLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV 146 + ++G DD + KP RE+ R+ AI RR + +E IR+ SD + +G Sbjct: 87 RIRGLEAGADDYITKPFSPREVGLRIEAILRR-HGDTSWSEAEGIRIDSDTGELSFEGST 145 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 LP E R+LE L+ + + V+ + ++ + +V + +LR L+ +G Sbjct: 146 TLLPAMESRVLEQLLHHYNRTVSFHDLLHNVWNTDESVGGREMVRITVHRLRAHLK-AIG 204 Query: 207 F--DPVDSKRFLGYSI 220 + +++ R GY + Sbjct: 205 VRENLIETVRGTGYRV 220 >gi|255531093|ref|YP_003091465.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255344077|gb|ACU03403.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 225 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 4/135 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV--QGEVFP 148 ++G DD + KP E+LAR+ AI RR K R E D ++ +V +G+ Sbjct: 92 LEAGADDYLAKPFSLTELLARMHAIIRR-KHKLERNEVNVHDFILDIKNHQVSFEGKRVN 150 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGF 207 L +E I YL+ N+ + +++ + ++G + + + N V+ H+ LRKKL Sbjct: 151 LTNKEFEIFNYLVLNKNRVISRVNLTEHVWGDILEVNSDSNFVDVHVKNLRKKLTAYATI 210 Query: 208 DPVDSKRFLGYSIDW 222 + ++ R +GY I++ Sbjct: 211 NWFETVRSIGYRINF 225 >gi|170694195|ref|ZP_02885350.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170140935|gb|EDT09108.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 220 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 22/158 (13%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ ++ ++ + +G DD + KP E++AR A+ RR ++ R+ T I+ Sbjct: 73 TPVLVMTARDTVADRVGGLTAGADDYLGKPFDLSELIARCRALLRR---AHGRS-TETIQ 128 Query: 133 VFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 RD V+ F PL RE +L L+ ++G +++ +I +YG + E Sbjct: 129 Y----RDLIVEPSTFTVTQGGLRQPLTSRECAVLIELLTHQGTPLSRARIEENLYG-WQE 183 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE N VE HIS LRK KLG + + R +GY ++ Sbjct: 184 EVESNTVEVHISNLRK----KLGPGIIKTIRGVGYVVE 217 >gi|148656746|ref|YP_001276951.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148568856|gb|ABQ91001.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 231 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 78/158 (49%), Gaps = 23/158 (14%) Query: 61 LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 L++ R +RA H + ++ D P + D+G DD + KP H E+LAR+ A+ R Sbjct: 60 LDVCRYLRANYPHLLILILTARDQPEERVI--GLDTGADDYLIKPFHFGELLARIRALLR 117 Query: 118 R-LKVSNNRAETGPIRVFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAK 170 R L+V P+ + D + DP Q + L R+E IL YLM ++G+ + + Sbjct: 118 RDLRVRQ------PLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQ 171 Query: 171 TQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRNKLG 206 + ++ D V N V HI+ LR+KLR+ + Sbjct: 172 EMLLEHVW---DGTVNPFTNTVRVHINALRRKLRDTIA 206 >gi|12744844|gb|AAK06808.1|AF324838_27 putative regulator SimReg1 [Streptomyces antibioticus] Length = 251 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 19/157 (12%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IRA S VP+I +S + G DD + P R+++AR+ A+ RR Sbjct: 72 FEVCRAIRAVSHVPIIVVSARDDELDQILSLKLGADDYIVWPCGMRQLVARMEALIRR-- 129 Query: 121 VSNNRAET---------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 + N E+ GP+R+ R G PL R+E +L L + G Sbjct: 130 -ARNAWESWGVPLASPEPGVRQFGPVRIDLQRRSVTRDGHEVPLTRKEFDMLALLATDPG 188 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + + QI ++G D A + + H++ +RKKLR Sbjct: 189 RVFTREQIMFEVWG-HDGAGDTRTLGVHVTGIRKKLR 224 >gi|83719535|ref|YP_440832.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|83653360|gb|ABC37423.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 272 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 27/136 (19%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPI-------RVFSDGRDPE 141 +G DD + KP E+ AR+ + RR + S ET GP+ +V+ DG Sbjct: 141 AGGDDYLTKPFDTEEMTARLEVLLRRSQASPAPFETTLAVGPLTLDLISRKVYRDG---- 196 Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKK 200 E+ LP E R+LE++M + G+ + + +F A++G FD N+++ H+ +LRKK Sbjct: 197 --AEIALLPT-EYRVLEFMMRHAGQTITRMMLFEAVWGYHFDPGT--NLIDVHMGRLRKK 251 Query: 201 LRNKLGFDPVDSKRFL 216 + DP D+ + Sbjct: 252 I------DPPDATPMI 261 >gi|33241229|ref|NP_876171.1| two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238759|gb|AAQ00824.1| Two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 269 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 22/173 (12%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +RA S VP+I +S ++ + D G DD ++KP +E+ AR+A I RR+ + Sbjct: 89 RRLRAESIVPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPGAS 148 Query: 125 RAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 AE G + V ++ R GE L E +LE L + GK V + + Sbjct: 149 VAEPREIPAGQGVMKLGELVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGKVVPRAE 208 Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYS 219 I ++G A + VV+ ++++LR KL DP + + R +GYS Sbjct: 209 ILEQLWGYPPRRAADLRVVDVYVARLRGKLEP----DPRNPELILTVRGIGYS 257 >gi|54309587|ref|YP_130607.1| putative transcriptional regulatory protein PhoP [Photobacterium profundum SS9] gi|46914025|emb|CAG20805.1| putative transcriptional regulatory protein PhoP [Photobacterium profundum SS9] Length = 229 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 74/148 (50%), Gaps = 3/148 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130 ++P++ ++ + Q + ++G DD + KP E++AR++A+ RR G Sbjct: 77 RLPVLILTARANWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSAGFVKPEMSAGD 136 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 IRV + V + L E +LEYLM + + V+K ++ +Y D+ + N + Sbjct: 137 IRVDLLAKQVFVGETLLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE--DQEGDPNTI 194 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E IS+LRKK + +P+ + R GY Sbjct: 195 EVMISRLRKKFMSAGQDNPISTIRGQGY 222 >gi|13475522|ref|NP_107086.1| two-component system, regulatory protein [Mesorhizobium loti MAFF303099] gi|14026274|dbj|BAB52872.1| two-component system, regulatory protein [Mesorhizobium loti MAFF303099] Length = 221 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 75/137 (54%), Gaps = 12/137 (8%) Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQ 143 +D ++G DD + KP E+LAR+ AI RR S +A ++GP+ + + ++ Sbjct: 88 VDGINAGADDYLPKPFEMEELLARLRAILRR---STGQAAPVLKSGPLVLDTRQMRISLR 144 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 G L E R+L +LM + G+ VA T++ +Y ++ + N VE +++LR+ Sbjct: 145 GIPVALSPLEYRLLAFLMHHAGRVVAPTELAEHLYDSGNDR-DPNAVEVIVARLRR---- 199 Query: 204 KLGFDPVDSKRFLGYSI 220 KLG D ++++R GY + Sbjct: 200 KLGSDVIETRRGFGYFV 216 >gi|115360612|ref|YP_777749.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285940|gb|ABI91415.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 261 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 97/191 (50%), Gaps = 17/191 (8%) Query: 22 DGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGIS 79 +G ++ F+S L+ +++L S D++ ++ L G G+K+L+ R R+ S +P+I + Sbjct: 31 EGYHIDAFHSGLDAQQFL-SEQWADLAILDWDLPGVSGDKLLQKIRS-RSQSIMPVIFQT 88 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD--- 136 + + + D+G DD + KP + +LAR+ A+ RR N + ++F D Sbjct: 89 VHSAESDIVRILDAGADDYLVKPYDRQVLLARMRALLRRFAPMNVQGR----KMFVDDEC 144 Query: 137 -----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 R V G L +E IL +L + G V + + S ++G +D AV+ V+ Sbjct: 145 ALDQQARSLVVAGVAHKLGTKEFDILWHLARHTGAVVLRQDLMSVVWG-WDAAVQSRSVD 203 Query: 192 SHISKLRKKLR 202 ++S+LR L+ Sbjct: 204 MYVSRLRASLK 214 >gi|332828064|gb|EGK00786.1| hypothetical protein HMPREF9455_03060 [Dysgonomonas gadei ATCC BAA-286] Length = 221 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/159 (23%), Positives = 78/159 (49%), Gaps = 3/159 (1%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ + IR +P++ ++ ++Q T++ G +D + KP E+L R+ I+ R Sbjct: 61 IDVCKAIRQEDINIPILFLTARDTVQDTIEGLQCGANDYIKKPFSFEELLERI-KIHFRN 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G I + S + +++ L RE +LE+L+ N+G + +I ++G Sbjct: 120 SIEQGILTLGNISLNSQTYEVQIEASDIALTHREFELLEFLIKNKGNVCKRDEIIEKVWG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + E + V++ I+ +RKKL + + R +GY Sbjct: 180 INFE-YDTGVIDVFINAIRKKLNLDKDNGYIKTVRGVGY 217 >gi|293374408|ref|ZP_06620733.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325837122|ref|ZP_08166293.1| putative transcriptional regulatory protein ResD [Turicibacter sp. HGF1] gi|292646968|gb|EFF64953.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325491072|gb|EGC93366.1| putative transcriptional regulatory protein ResD [Turicibacter sp. HGF1] Length = 226 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 15/174 (8%) Query: 38 LQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 L S + D++ ++ + GK G VL + IR+ S+VP++ ++ S++ + +D VD Sbjct: 42 LFHSQQIDLALLDLMMPGKDGFSVL---KEIRSVSKVPIMILTARSSVEDQVKGYDLKVD 98 Query: 97 DVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPL 149 D + KP ++ +LA+ I R L +N E + DG R + E+ Sbjct: 99 DYITKPFENKILLAK---INRLLARTNEEDEVTTYELAFDGLVVNKLSRTVRIDNELIDF 155 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 +E +L +L+ N + + +I A++G+ D + VV++HI K+RKKL N Sbjct: 156 RPKEFDLLVFLIENHRIALDRDRILDAVWGI-DYFGDTRVVDTHIKKIRKKLGN 208 >gi|172034929|ref|YP_001801430.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171696383|gb|ACB49364.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 228 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 107/219 (48%), Gaps = 20/219 (9%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + LV + YI + DGV E ++ L+ +W S AI +L+ K LEL + + Sbjct: 18 QVLVSEKYIVDWVVDGV--EAWHYLD-NQWTDYSV-----AIIDWLLPKLSG-LELCQRL 68 Query: 68 RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R+H +P++ ++ + + D+G DD + KP E+LAR+ A+ RR + Sbjct: 69 RSHQNPLPVLMLTALGQPENRITGLDAGADDYLVKPFIMEELLARLRALQRR--SPQFQP 126 Query: 127 ETGPIRVFS--DGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +T I FS D + + PL +E +I YLM + + ++ ++I + ++ Sbjct: 127 QTLSIGQFSLDDANNALCVNVTQPPQTIPLTVKEFQIFAYLMKHPDRIISGSKIRNQLWD 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L E + NVV + + +R+KL + P+++ R GY Sbjct: 187 LDAEPM-SNVVAAQMRLIRRKLASYNCICPIETIRGQGY 224 >gi|90412642|ref|ZP_01220644.1| putative transcriptional regulator [Photobacterium profundum 3TCK] gi|90326450|gb|EAS42862.1| putative transcriptional regulator [Photobacterium profundum 3TCK] Length = 219 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 8/152 (5%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAET 128 VP+I ++ S+ + DSG D + KP E+LAR+ R K ++ N Sbjct: 71 HVPVILLTAMVSVTDKVIGLDSGAKDYLTKPFAEEELLARIRLHLRNGKDDHLAANIITV 130 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G I + + R+ G+ L R E +L +L N G+ + ++ ++G ++ Sbjct: 131 GQISINMESREVNHGGDTVTLTRTEFELLVFLAKNAGRVFTRDELLDQVWG-YNHYPTTR 189 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V++HI +LR+KL +G + +++ R +GY + Sbjct: 190 TVDTHILQLRQKL---IGIE-IETLRGVGYRM 217 >gi|49081878|gb|AAT50339.1| PA0756 [synthetic construct] Length = 224 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 4/157 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + Sbjct: 63 LARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSVLG 122 Query: 123 NNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + V+ G R + + L RE+ +LE ++A G+ ++K Q+ + ++GL Sbjct: 123 GEQLQRCGALVYDLGTRRFSLDEQPLTLTSREQAVLEAMIARPGRVMSKEQLAAQVFGL- 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + +E ++ +LRKKL G + + R LGY Sbjct: 182 DEEASADAIEIYVHRLRKKLEG--GAVRIVTFRGLGY 216 >gi|323463385|gb|ADX75538.1| two-component response regulator SaeR [Staphylococcus pseudintermedius ED99] Length = 228 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 71/140 (50%), Gaps = 6/140 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----T 128 +P + ++ S Q T+ G DD V KP RE++ RV + R+ V++ + Sbjct: 73 IPYVYLTAKTSEQDTIFGLMLGADDYVKKPFSPRELVIRVKNLMNRVNVTSPSTQETIHC 132 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + + + E++GEV P +E +L Y + ++KT + ++G ++ + N Sbjct: 133 GRLVLNNLNKTVELEGEVIPFRIKEFELLWYFANHESVALSKTDLLEQVWG-YEYYEDMN 191 Query: 189 VVESHISKLRKKLRNKLGFD 208 + H+ ++R+KL K G+D Sbjct: 192 TLNVHVHRIREKLE-KYGYD 210 >gi|253573896|ref|ZP_04851238.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846373|gb|EES74379.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 239 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 31/226 (13%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY + DG+ L F E + D+ ++ L GK +++ R +RA Sbjct: 22 LEKEGYEVVLAFDGIEA---TQLAFSE------QPDLILLDLMLPGKDG--MDVCREVRA 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--------V 121 + P+I ++ + + G DD V KP RE+LARV A RR + Sbjct: 71 KLETPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQQKAAAAAEGA 130 Query: 122 SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +F D V GE L RE ++ YL+ N GK + + + A++G Sbjct: 131 EETKQGISLFELFIDTDMYTVYKNGEPLDLTHREFELMHYLVKNSGKVMTREHLLQAVWG 190 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220 F+ + V+ I +LR+K+ DP + ++R LGY + Sbjct: 191 -FEYFGDVRTVDVTIRRLREKIEK----DPSKPEYILTRRGLGYMM 231 >gi|229154353|ref|ZP_04282473.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228629177|gb|EEK85884.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 242 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 79 ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 135 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N R + + D V E L E +L + + + + Q+ I+G Sbjct: 136 TNQRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 195 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D K G W Sbjct: 196 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDDHLKTVYGVGYRW 237 >gi|49081934|gb|AAT50367.1| PA1637 [synthetic construct] Length = 231 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 25/225 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF---EEWLQSSA--REDVSAIEAFLIGK 56 +LIDD ++ F ++ +G+ LE EE L +A R D+ ++ L + Sbjct: 8 ILLIDDEPQIRK-----FLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGLPDR 62 Query: 57 -GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ +L R +R SQVP++ +S S + D G +D V KP +E LARV + Sbjct: 63 DGQDIL---RDLREWSQVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVL 119 Query: 116 YRRLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R+ + GP++V R ++G L R+E +L L + G+ V + Q Sbjct: 120 LRQAAQGESPEASVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQ 179 Query: 173 IFSAIYGLFDEAVEENVVESH-ISKLRKKLRNKLGFDPVDSKRFL 216 + I+G +V ++H + + LR KLG DP S RFL Sbjct: 180 LLKDIWG------PTHVEDTHYLRVVVGHLRQKLGDDPA-SPRFL 217 >gi|318041765|ref|ZP_07973721.1| two-component response regulator, OmpR subfamily protein [Synechococcus sp. CB0101] Length = 247 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 10/123 (8%) Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---------ETGPIRVFSDGR 138 ++ D+G DDV+ +P RE++AR A+ RR++ A E G +++F + Sbjct: 102 VELLDTGADDVLVRPFGLRELVARCRAMLRRVRRMEQSARLAQAGTVLEAGALQLFREQC 161 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 V G L RE R+LE M G+ +++ Q+ ++G D V+ H+ LR Sbjct: 162 RVCVHGAEVNLTPREFRLLECFMLQPGRALSRDQLIEQVWG-ADYCGNNKSVDVHVLWLR 220 Query: 199 KKL 201 +KL Sbjct: 221 RKL 223 >gi|167629619|ref|YP_001680118.1| transcriptional regulator [Heliobacterium modesticaldum Ice1] gi|167592359|gb|ABZ84107.1| transcriptional regulator [Heliobacterium modesticaldum Ice1] Length = 223 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 78/152 (51%), Gaps = 3/152 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAETG 129 Q P++ ++ +++ + D+G DD + KP E++AR+ A+ RR K+ + Sbjct: 72 QCPILMLTAKDAVEDRVQGLDAGADDYLVKPFASAELMARLRALSRRGKIPLQEEIVQVA 131 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + + G+ L RE +L+ L+ N+G+ + + I ++GL D V +N Sbjct: 132 DLLLNRNRHSVTRGGKEITLTSREFALLDLLVQNKGQVLPRELIMERVWGL-DADVTDNT 190 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++++I LRKK+ + + R +GY+++ Sbjct: 191 LDAYIRLLRKKIEPPGAAKLIHNIRGVGYTLE 222 >gi|322385215|ref|ZP_08058862.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] gi|321270839|gb|EFX53752.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] Length = 218 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 7/160 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + IR SQ+P++ ++ T L F+ + D V KP ++ R+ I RR Sbjct: 61 LDVLKEIRKTSQIPVMILTALDDEYTQLVSFNHLISDYVTKPFSPLILVKRIENILRRNT 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 VS + G + V D Q E PL ++E IL+ L + V + Q+ + I+G Sbjct: 121 VS-SEITVGELTVSIDDCTVYWQEEKMPLTKKEYEILQALAKRKDHLVTRDQLMNTIWGY 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ V+++HI +RKK+ P+ + +GY + Sbjct: 180 SE--LDSRVLDNHIKNIRKKIPGI----PLKTITGMGYQL 213 >gi|300693468|ref|YP_003749441.1| DNA-binding response regulator in two-component regulatory system with bass (basr) [Ralstonia solanacearum PSI07] gi|299075505|emb|CBJ34798.1| Putative DNA-binding response regulator in two-component regulatory system with BasS (basR) [Ralstonia solanacearum PSI07] Length = 221 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 14/203 (6%) Query: 28 GFNS------LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 G+N+ ++ ++W+ S+ + + G+G LE R A S VP+I S Sbjct: 25 GYNTTWVRRLMDAQKWMGSNTFDAIVLDLGLPDGEGHVFLEELRA--AQSDVPVIIASAR 82 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDP 140 +L L D G DD + KP E++AR+ A+ RR S NR G + V + Sbjct: 83 DALSERLKGLDEGADDFLVKPFPVDELIARLRAVLRRHAGQSTNRWSVGSLVVEPSQKRV 142 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 G V L RE ++L L+ + V + + A+Y + V N +E I Sbjct: 143 TQDGNVVELTPREYQLLFELVRRAHRWVTRETLMDALYREGNR-VSANALEVVI----HH 197 Query: 201 LRNKLGFDPVDSKRFLGYSIDWN 223 LR KLG + + R +GY I N Sbjct: 198 LRGKLGEGVIQTIRGVGYMIGGN 220 >gi|260427208|ref|ZP_05781187.1| phosphate regulon transcriptional regulatory protein PhoB [Citreicella sp. SE45] gi|260421700|gb|EEX14951.1| phosphate regulon transcriptional regulatory protein PhoB [Citreicella sp. SE45] Length = 229 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 6/165 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R I+ + VP+I +S + ++G DD V KP RE++ARV A R Sbjct: 65 IEVCRQIKTRPETRGVPVIMLSARSEEVDRIRGLETGADDYVVKPYSLRELMARVRAQLR 124 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + + R E I + ++ G+ L E R+L M G+ ++ Q+ Sbjct: 125 RARPAAAGLRLEYEDIVLDAETHRVTRDGQELKLGPTEFRLLSTFMEKPGRVWSREQLLD 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V+ V+ HI +LRK L G DP+ + R GY++ Sbjct: 185 RVWG-RDIYVDTRTVDVHIGRLRKALGVHGGGDPLRTVRGAGYAL 228 >gi|300361211|ref|ZP_07057388.1| response regulator [Lactobacillus gasseri JV-V03] gi|300353830|gb|EFJ69701.1| response regulator [Lactobacillus gasseri JV-V03] Length = 246 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 13/175 (7%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L + ED AI L+ LE+ R +R P+I ++ S+ + D G DD Sbjct: 42 LDLALNEDFDAILLDLMLPDLNGLEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADD 101 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV-----FSD------GRDPEVQGEV 146 + KP E+LAR+ A+ RR+++ RA + V F+D R Sbjct: 102 YIVKPFAIEELLARLRAVLRRVQIE-KRAMGDTMGVQKVVHFNDLTIETANRIVHRGDST 160 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L +RE +L L+ N+ V + Q+ + I+G + +E NVVE ++ LR K+ Sbjct: 161 VDLTKREYNLLMTLIKNKNNVVTREQLLNKIWG-PESKIETNVVEVYVRYLRNKI 214 >gi|170783046|ref|YP_001711380.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157616|emb|CAQ02814.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 226 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 8/163 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLK 120 E+ R IR S VP+I ++ S + + G DD V KP RE+LAR+ A+ RR++ Sbjct: 62 EVCREIRTRSAVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARIRAVLRRRVE 121 Query: 121 VSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V + N E G +R+ + EV G +P +E +LE L+ N G+ + + Q+ + Sbjct: 122 VDDEPLNVLEVGSVRMDVERHTVEVDGREIAMPLKEFELLELLLRNAGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGY 218 +G D + ++ HI ++R K+ + DPV + R LGY Sbjct: 182 WG-SDYFGDTKTLDVHIKRIRSKIEREPS-DPVLLVTVRGLGY 222 >gi|163816645|ref|ZP_02208008.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759] gi|158447902|gb|EDP24897.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759] Length = 235 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 12/167 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +E+ +++R S VP+I ++ + + G DD + KP + E+ AR+ AI RR Sbjct: 68 IEVCQMVREFSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAILRRSG 127 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +K SN E ++V D R V G+ L +E +LE LMA+ K ++ ++ Sbjct: 128 KKQAPVKQSN-VMEVNGMKVELDSRRVFVGGKELNLTAKEFDLLELLMAHPNKVYSRNEL 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGY 218 S I+G + V+ H+ +LR+K+ G +PV +K +GY Sbjct: 187 LSTIWG-DSYPGDARTVDVHVRRLREKIEANPG-EPVYIHTKWGVGY 231 >gi|149926314|ref|ZP_01914576.1| probable two-component response regulator transcription regulator protein [Limnobacter sp. MED105] gi|149825132|gb|EDM84344.1| probable two-component response regulator transcription regulator protein [Limnobacter sp. MED105] Length = 241 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/237 (25%), Positives = 114/237 (48%), Gaps = 40/237 (16%) Query: 13 DGYIALFGDDGVSLEGF---------NSLEFEEWLQSSAREDVSAIEAFLI-----GKGE 58 D ++ F + G+ EG+ L + LQ RE+ + L G G Sbjct: 9 DARVSSFLERGLKAEGYRPQVAHNANTGLSMAKALQKEVRENFESAVVILDVMLPDGSG- 67 Query: 59 KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 L++ + +RA +P++ ++ S++ + G DD + KP EILAR+ A+ R Sbjct: 68 --LDVCQTLRAEGFALPVLMLTALNSVEDRVAGLRMGADDYLGKPFAFDEILARLEALGR 125 Query: 118 R------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 R L+V++ + +R+ GR E+Q L +E ++E LM+ G Sbjct: 126 RVGNAAPKQARKNLEVADLNLDLEKMRLSRAGR--EIQ-----LTAKELALVELLMSAPG 178 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 + ++ +I S ++G+ ++ + NVV+ +I +LR K+ + G P + ++R LGY ++ Sbjct: 179 RLFSRERILSNVWGVNEDPL-TNVVDVYIRRLRTKI-DLEGLQPLIHTQRGLGYRLE 233 >gi|319947852|ref|ZP_08022040.1| response regulator receiver [Dietzia cinnamea P4] gi|319438497|gb|EFV93429.1| response regulator receiver [Dietzia cinnamea P4] Length = 322 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 13/153 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +E+ R +R HS ++ ++ TL G DD + KP RE++AR+ A+ RR Sbjct: 45 VEVCRQVRTHSDAYIVMLTARTEEVDTLIGLSVGSDDYMTKPFSPRELMARIQAMMRRPR 104 Query: 119 ----------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + + E G + + GR+ V G L E IL L + G + Sbjct: 105 TGPAAGAPAEVPAGESLREFGDLTIDVQGREVTVAGNAIALTCTEFDILASLSRDPGVVL 164 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ Q+ SA++G + ++++V+ HI LR+KL Sbjct: 165 SRPQLISAVWGP-NWVGDDHLVDVHIGHLRRKL 196 >gi|288818989|ref|YP_003433337.1| two-component response regulator [Hydrogenobacter thermophilus TK-6] gi|288788389|dbj|BAI70136.1| two-component response regulator [Hydrogenobacter thermophilus TK-6] gi|308752574|gb|ADO46057.1| two component transcriptional regulator, winged helix family [Hydrogenobacter thermophilus TK-6] Length = 226 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 12/182 (6%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 D+ ++ FL GK + +P I +P+I ++ + + G DD + KP Sbjct: 46 DICILDLFL-GKESGSMLIP--ILNERNIPVIVLTVVDDVSEKVRCLRMGADDYMVKPFS 102 Query: 105 HREILARVAAIYRRLK-VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160 E+L R+ + RR+K ++ NR E I FS + G LP+++ IL L Sbjct: 103 PEELLTRIETVLRRVKGITKNRTIKYENLEIDPFS--MTVRINGHAIFLPKKQVMILIKL 160 Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N G + +FS + +++A + + +H+ LRK LRN GFD + S +GY++ Sbjct: 161 LENIGGVTSYNTLFSYAWVSYEDA-SIDALRTHVHNLRKVLRN-YGFDII-SYPGVGYTL 217 Query: 221 DW 222 + Sbjct: 218 RY 219 >gi|258513128|ref|YP_003189384.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-01] gi|258542677|ref|YP_003188110.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-01] gi|256633755|dbj|BAH99730.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-01] gi|256635031|dbj|BAI01005.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-01] gi|256636814|dbj|BAI02783.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-03] gi|256638086|dbj|BAI04053.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-03] gi|256639867|dbj|BAI05829.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-07] gi|256641140|dbj|BAI07100.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-07] gi|256642923|dbj|BAI08878.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-22] gi|256644195|dbj|BAI10148.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-22] gi|256645978|dbj|BAI11926.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-26] gi|256647250|dbj|BAI13196.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-26] gi|256649031|dbj|BAI14972.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-32] gi|256650303|dbj|BAI16242.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-32] gi|256652018|dbj|BAI17952.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653294|dbj|BAI19226.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655075|dbj|BAI21002.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-12] gi|256656347|dbj|BAI22272.1| two component response regulator KdpE [Acetobacter pasteurianus IFO 3283-12] Length = 223 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 7/129 (5%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPR 151 G DD + KP E++AR+AA+ RR +A + G I + + R L Sbjct: 94 GADDYIVKPYDLNELVARIAAVARRYVAPRRQACYQMGEIVIDRENRSVTRNEMELELTA 153 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 RE I+E L G+ ++ QI +A+Y L D+ V N VE IS+LRKK+ N + + Sbjct: 154 REWAIMELLSRRPGRIYSRQQIDTALYAL-DQDVGSNTVEVFISRLRKKVGNTV----IK 208 Query: 212 SKRFLGYSI 220 + R GY + Sbjct: 209 TVRGRGYCL 217 >gi|255523369|ref|ZP_05390339.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188303|ref|ZP_06856695.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255513023|gb|EET89293.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047429|gb|EFG86871.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 230 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 20/213 (9%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF---EEWLQSSAREDVSAIEAFLIGKG 57 + V+ DD+ +VK +S EGF ++ EE L + + I ++ G Sbjct: 5 ILVVDDDKDIVK------LITKSLSYEGFETIPAYSGEEALCALEENHIDFIILDIMMPG 58 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 L++ R IR P++ +S + + G DD + KP +E+ +R+ A +R Sbjct: 59 MDGLDVCRSIRKSYNTPILLLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANFR 118 Query: 118 RL--------KVSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168 ++ ++S NR T + +D + + L +E +IL LM N + Sbjct: 119 KVDRLFKEWNELSPNRETTDSPLILNDKTFEAFLNNRKLNLSTKEFQILSMLMHNPNTVL 178 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + QI+ ++G DE E N V HI +RKKL Sbjct: 179 TREQIYEYVWG--DEYGELNTVTVHIKNIRKKL 209 >gi|212696046|ref|ZP_03304174.1| hypothetical protein ANHYDRO_00582 [Anaerococcus hydrogenalis DSM 7454] gi|212676955|gb|EEB36562.1| hypothetical protein ANHYDRO_00582 [Anaerococcus hydrogenalis DSM 7454] Length = 222 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S +P+I I+ ++ + G DD ++KP + + ++ A+ RR +N Sbjct: 66 IREISNLPIIFITSASDDINLINAINYGADDFISKPFSMQVLNMKIKALLRRSYDFSGNN 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 I + D +V + L + E ILE LM N K V++ I ++ D Sbjct: 126 FNLSYKNISLIKDKMILKVNDKEINLSKNEFLILEILMENPQKIVSRELIMDKLWAT-DS 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +++N + +I++LRKKL++ G D + +K+ +GY I Sbjct: 185 FIDDNTLTVNINRLRKKLKD-FGLDDFIQTKKGVGYFI 221 >gi|188996079|ref|YP_001930330.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] gi|188931146|gb|ACD65776.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] Length = 224 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 7/156 (4%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 + P++ +S S++ + G DD + KP E+LAR+ A+ RR K + ++ Sbjct: 72 KTPILVLSAKDSVEDKVKGLSLGADDYLTKPFSFPELLARIQALVRRSKDIDEISKLKYH 131 Query: 132 RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + D EV + L +E +L+YLM N K V + I + ++ + D +E NV Sbjct: 132 DLVMDLLKKEVYRGNKKIDLTAKEYELLKYLMENAEKIVTRNMILANVFDI-DFDIESNV 190 Query: 190 VESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223 V+ I +LR K+ GFD + + R GY + N Sbjct: 191 VDVQIHRLRDKIDK--GFDKRLIHTVRGFGYVLKAN 224 >gi|154688062|ref|YP_001423223.1| YxdJ [Bacillus amyloliquefaciens FZB42] gi|154353913|gb|ABS75992.1| YxdJ [Bacillus amyloliquefaciens FZB42] Length = 229 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 93/200 (46%), Gaps = 19/200 (9%) Query: 39 QSSAREDVSAI-EAFLIGKGEKVL---ELP--------RIIRAHSQVPLIGISDYPSLQT 86 Q+ A +D +A+ + FL K + VL LP R IR HS P+I IS Sbjct: 27 QTVAADDFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISARSGEMD 86 Query: 87 TLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETGPIRVFSDGRDP 140 + ++G DD + KP + +LA++ + RR K E +++F + + Sbjct: 87 QVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFEL 146 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 Q E L ++E ++LE L+ K + ++ + D V++N + +I++LRKK Sbjct: 147 RFQDEKSELSKKESKLLEVLLERGEKVTGRDRLMEKTWDT-DIFVDDNTLNVYITRLRKK 205 Query: 201 LRNKLGFDPVDSKRFLGYSI 220 LR ++S R GY + Sbjct: 206 LRELNAPVSIESVRGEGYQL 225 >gi|238853787|ref|ZP_04644153.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri 202-4] gi|282851358|ref|ZP_06260723.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|311110344|ref|ZP_07711741.1| DNA-binding response regulator CsrR [Lactobacillus gasseri MV-22] gi|238833596|gb|EEQ25867.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri 202-4] gi|282557326|gb|EFB62923.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|311065498|gb|EFQ45838.1| DNA-binding response regulator CsrR [Lactobacillus gasseri MV-22] Length = 242 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 13/175 (7%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L + ED AI L+ LE+ R +R P+I ++ S+ + D G DD Sbjct: 38 LDLALNEDFDAILLDLMLPDLNGLEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV-----FSD------GRDPEVQGEV 146 + KP E+LAR+ A+ RR+++ RA + V F+D R Sbjct: 98 YIVKPFAIEELLARLRAVLRRVQIE-KRAMGDTMGVQKVVHFNDLTIETANRIVHRGDST 156 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L +RE +L L+ N+ V + Q+ + I+G + +E NVVE ++ LR K+ Sbjct: 157 VDLTKREYNLLMTLIENKNNVVTREQLLNKIWG-PESKIETNVVEVYVRYLRNKI 210 >gi|325479620|gb|EGC82712.1| subtilin biosynthesis regulatory protein SpaR [Anaerococcus prevotii ACS-065-V-Col13] Length = 219 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 5/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR P++ ++ + ++ G DD + KP E+LAR+ A RR K + + Sbjct: 66 IRGKVDCPILFLTAKTMEEDIVEGLLIGGDDYITKPFGAAELLARIEAHLRREKRERHTS 125 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 G IR + V E L + E +I E L +G+ ++ QI+ ++G FD Sbjct: 126 LNLGEIRFDLSSNEVFVVEEKVHLTKSEYQISELLAKRKGQVFSRDQIYELVFG-FDGIG 184 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + + + HI +R K + K G +P+++ +GY WN Sbjct: 185 DASAISEHIKNIRAKFQ-KYGENPIETVWGIGYK--WN 219 >gi|229032474|ref|ZP_04188442.1| Two-component response regulator [Bacillus cereus AH1271] gi|228728843|gb|EEL79851.1| Two-component response regulator [Bacillus cereus AH1271] Length = 229 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 67/152 (44%), Gaps = 8/152 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 64 VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123 Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I V R + L E IL Y M N+G + + Q+ S Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTIDRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 I+G ++ A ++ V SHI LR KL K + Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|255595850|ref|XP_002536403.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] gi|223519809|gb|EEF25981.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] Length = 233 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+ VP+I ++ + + + FD G DD + KP E+ AR+ A RR+ Sbjct: 72 IKRLRNGKQAVPVIVLTANDNSEDIVRAFDLGADDYLIKPFKLPELTARIRAQIRRVSAH 131 Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +++ G + + + R V+GE L RE +LE L GK V K + ++ + Sbjct: 132 FSSKVSIGELELDTKERLAFVKGEKLSLSPREFSLLETLSNKFGKLVTKDALIESLCN-W 190 Query: 182 DEAVEENVVESHISKLRKKL 201 D + N +E ++ +LRKKL Sbjct: 191 DHDIGPNAIEVYVHRLRKKL 210 >gi|222094405|ref|YP_002528464.1| response regulator [Bacillus cereus Q1] gi|221238462|gb|ACM11172.1| response regulator [Bacillus cereus Q1] Length = 225 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N R + + D V E L E +L + + + + Q+ I+G Sbjct: 119 TNQRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDDHLKTVYGVGYRW 220 >gi|171780277|ref|ZP_02921181.1| hypothetical protein STRINF_02065 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281625|gb|EDT47060.1| hypothetical protein STRINF_02065 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 230 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 80/166 (48%), Gaps = 8/166 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +I ++ S+ + D G DD + KP E+LARV A++RR Sbjct: 63 EITRRLRLEKDTSIIMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARVRAVFRRQDA 122 Query: 122 SNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + + G +R+ R + L +RE +L L++N + + + ++ Sbjct: 123 NSKQDKEGQAKEGLLGLRLNPQNRSAVRGDDEISLTKREYDLLSVLLSNVNRVMTREELL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++++ +D +E NVV+ +I LR K+ + + R +GY I Sbjct: 183 ASVWR-YDTDIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYII 227 >gi|167758394|ref|ZP_02430521.1| hypothetical protein CLOSCI_00734 [Clostridium scindens ATCC 35704] gi|167664291|gb|EDS08421.1| hypothetical protein CLOSCI_00734 [Clostridium scindens ATCC 35704] Length = 227 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/222 (23%), Positives = 107/222 (48%), Gaps = 6/222 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V+ DDR L ++ + F G S +S + E + D++ ++ L G+ Sbjct: 4 IIVVEDDRYL-REELVTTFERKGYSAWSISSFDEAEKEILAYAPDLAVLDLNLPGRSG-- 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R ++A + P++ ++ +L L G DD + KP H + ARVA + + Sbjct: 61 FELCRRLKARAAFPILILTARDALADELHALGLGADDFLTKPCHPDRLTARVARLIKTYG 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ + G + + D + L E +IL+ LM + V K ++F ++G Sbjct: 121 RVHDSLQAGSLILDLDAGRAAFKDRHTDLTETEGKILKTLMEYYPQTVPKEELFERLWG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 E V++N+++ ++++LRK + + +G + + + R GY ++ Sbjct: 180 GSEFVDDNILQVNMARLRKSM-DHIGLREAIRTVRAQGYRLE 220 >gi|154505591|ref|ZP_02042329.1| hypothetical protein RUMGNA_03130 [Ruminococcus gnavus ATCC 29149] gi|153794030|gb|EDN76450.1| hypothetical protein RUMGNA_03130 [Ruminococcus gnavus ATCC 29149] Length = 240 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 41/199 (20%) Query: 43 REDVSAIEAFLIGKGEKVLE------------------------LPRI--------IRAH 70 +E V AIE +L +G +VL+ +PR+ IR Sbjct: 20 KEIVEAIEIYLTQEGYQVLKAYDGMQALKMLETETVHLLILDVMMPRLDGIRATLKIRET 79 Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-----KVSNNR 125 + +P+I +S + + G DD + KP + E++ARV + RR VS+ + Sbjct: 80 NSIPIIILSAKSEDADKILGLNIGADDYMTKPFNPLELVARVKSQLRRYTQLGGNVSSTQ 139 Query: 126 A---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 E G +R+ D ++ V GE+ L E IL LM N+G+ + QI+ +I+ D Sbjct: 140 ETIYEVGGLRINDDLKEVTVDGEMVRLTPIEYNILLLLMKNQGRVFSINQIYESIWN-ED 198 Query: 183 EAVEENVVESHISKLRKKL 201 +N V HI +R+K+ Sbjct: 199 AIGADNTVAVHIRHIREKI 217 >gi|114798039|ref|YP_760125.1| DNA-binding response regulator ChvI [Hyphomonas neptunium ATCC 15444] gi|114738213|gb|ABI76338.1| DNA-binding response regulator ChvI [Hyphomonas neptunium ATCC 15444] Length = 258 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 12/168 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +EL R +R S++P+I ++ + F+ G DD V KP +R + RV A+ RR + Sbjct: 89 MELLRRLRQTSELPVIFLTSKDEEIDEVIGFNIGADDFVRKPCSNRLLAERVKAVLRRSR 148 Query: 121 VSNNRAETGPIRVFSDGR---DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ E G ++ G+ DP G+ L E IL+ L G ++ Q Sbjct: 149 GASAVPEEGDVKAIVRGKLVLDPNRHACTWDGKQVRLTVTEFLILQALATRPGYVKSRDQ 208 Query: 173 IFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 + A Y D+ V++ ++SHI +LRKK R FD +++ +GY Sbjct: 209 LMDAAYD--DQIYVDDRTIDSHIKRLRKKFREVTDEFDAIETLYGVGY 254 >gi|145596198|ref|YP_001160495.1| response regulator receiver [Salinispora tropica CNB-440] gi|145305535|gb|ABP56117.1| response regulator receiver [Salinispora tropica CNB-440] Length = 233 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 13/150 (8%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R++R ++ P++ ++ + + G DD V KP E+ AR+ A+ RR Sbjct: 68 EVIRLLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR-- 125 Query: 121 VSNNRAETGPIRV-FSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E P R+ F+D + G+ L E ++L YLM N + ++K QI Sbjct: 126 --STSGEQAPARLTFADLELDEEAHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ +D ++N+VES+IS LR+K+ N Sbjct: 184 LDHVWN-YDFRGDDNIVESYISYLRRKVDN 212 >gi|110800218|ref|YP_696604.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168204892|ref|ZP_02630897.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168208625|ref|ZP_02634250.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168214155|ref|ZP_02639780.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|168215550|ref|ZP_02641175.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182624373|ref|ZP_02952157.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|110674865|gb|ABG83852.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|170663696|gb|EDT16379.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170713053|gb|EDT25235.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170714338|gb|EDT26520.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|177910376|gb|EDT72753.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|182382004|gb|EDT79483.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 223 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 8/187 (4%) Query: 27 EGFNSLEF---EEWLQSSAREDVS-AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82 EGFN LE EE L+ + V AI ++ K + L + R IR S P+I ++ Sbjct: 25 EGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDG-LAVCRNIREVSNTPIILLTAKS 83 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR--AETGPIRVFSDGRDP 140 + L ++ G DD + KP + +LA+ A+ RR N++ + + + + Sbjct: 84 QEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTLNDKNILDFNGLTINKLSHEV 143 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 ++ GE L +E +L YL +N G +++ +I ++G +D + V+++I +LR+K Sbjct: 144 KLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWG-YDYFGDIRTVDTNIKRLREK 202 Query: 201 LRNKLGF 207 L +K + Sbjct: 203 LLDKANY 209 >gi|42519507|ref|NP_965437.1| two-component regulatory system response regulator [Lactobacillus johnsonii NCC 533] gi|41583795|gb|AAS09403.1| two-component regulatory system response regulator [Lactobacillus johnsonii NCC 533] gi|329667746|gb|AEB93694.1| two-component regulatory system response regulator [Lactobacillus johnsonii DPC 6026] Length = 242 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 13/175 (7%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L + ED AI L+ LE+ R +R P+I ++ S+ + D G DD Sbjct: 38 LDLALNEDFDAILLDLMLPDLNGLEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV-----FSD------GRDPEVQGEV 146 + KP E+LAR+ A+ RR+++ RA + V F+D R Sbjct: 98 YIVKPFAIEELLARLRAVLRRVQIE-KRAMGDTMGVQKVVHFNDLTIETANRIVHRGDST 156 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L +RE +L L+ N+ V + Q+ + I+G + +E NVVE ++ LR K+ Sbjct: 157 VDLTKREYNLLMTLIENKNNVVTREQLLNKIWG-PESKIETNVVEVYVRYLRNKI 210 >gi|21221787|ref|NP_627566.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256787037|ref|ZP_05525468.1| two-component system response regulator [Streptomyces lividans TK24] gi|289770930|ref|ZP_06530308.1| two-component system response regulator [Streptomyces lividans TK24] gi|81859427|sp|Q9ZEP4|CSEB_STRCO RecName: Full=Transcriptional regulatory protein CseB gi|3980223|emb|CAA10325.1| response regulator [Streptomyces coelicolor A3(2)] gi|4585590|emb|CAB40858.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289701129|gb|EFD68558.1| two-component system response regulator [Streptomyces lividans TK24] Length = 234 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 32/227 (14%) Query: 9 ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 AL +DG+ DG+S LE F + R D++ ++ L G + L R I Sbjct: 23 ALERDGFAVTAMPDGLSGLESFRA----------DRPDIALLDVML--PGLDGVSLCRRI 70 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---- 123 R S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 71 RDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHAGGGDR 130 Query: 124 ----NRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 AETG + F +DG + G L E R+L + G +++ ++ Sbjct: 131 TEGAGAAETGGVLTFGDLEVDTDGMEVRRAGRPVGLTPTEMRLLLEFSSAPGTVLSRDKL 190 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + + VV+ H+ ++LR K+G D +++ R GY + Sbjct: 191 LERVWD-YGWGGDTRVVDVHV----QRLRTKIGQDRIETVRGFGYKL 232 >gi|47567988|ref|ZP_00238694.1| two-component response regulator [Bacillus cereus G9241] gi|47555291|gb|EAL13636.1| two-component response regulator [Bacillus cereus G9241] Length = 229 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 67/152 (44%), Gaps = 8/152 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 64 VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123 Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I V R + L E IL Y M N+G + + Q+ S Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTIDRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 I+G ++ A ++ V SHI LR KL K + Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|330877751|gb|EGH11900.1| winged helix family two component transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965158|gb|EGH65418.1| winged helix family two component transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 221 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 86/184 (46%), Gaps = 14/184 (7%) Query: 45 DVSAIEAFLIGK-GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 D+ ++ L GK G+ VL IR S VPL+ I+ SL L D G DD + KP Sbjct: 46 DLVLLDLGLPGKDGQAVLS---NIRGQSNAVPLLIITARDSLDDRLRGLDGGADDYLLKP 102 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEY 159 E+LAR+ A+ RR K + + G V D E Q L RE +L+ Sbjct: 103 FDMAELLARMRAVLRR-KGGSGKPLLGNGVVTLDPSSKEACTDQNPAVQLSGREFALLQA 161 Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 L+ G +++ + IYG +E VE N VE I LR+ KLG + + R +G+ Sbjct: 162 LLIRPGAILSRADLEDRIYGWGNE-VESNAVEFLIHALRR----KLGSHVIKNVRGVGWM 216 Query: 220 IDWN 223 + N Sbjct: 217 VSKN 220 >gi|258645697|ref|ZP_05733166.1| transcriptional regulatory protein CutR [Dialister invisus DSM 15470] gi|260403067|gb|EEW96614.1| transcriptional regulatory protein CutR [Dialister invisus DSM 15470] Length = 224 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 86/164 (52%), Gaps = 7/164 (4%) Query: 42 AREDVSAIEAF--LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 ARE+ + F ++ K + + L RI + P+I ++ ++ + D+G DD + Sbjct: 40 ARENSYSCMIFDIMMPKIDGIEALKRIRDSGDMTPVIMLTAKSEVEDRIMGLDAGADDYL 99 Query: 100 NKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 KP E+LAR+ ++ RR+ + + + + G + + ++ V L +E ++L Sbjct: 100 AKPFAMGELLARIRSMTRRMGEFTPTKLKKGDVELDVAEQELSCTSSV-RLSSKETKLLS 158 Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201 YLM N GK ++ ++F ++ DEA ++ +V +IS LR+K+ Sbjct: 159 YLMMNEGKTISTDELFRYVWS--DEADMDIGIVWMYISYLREKI 200 >gi|317050161|ref|YP_004117809.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|316951778|gb|ADU71253.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 220 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 93/205 (45%), Gaps = 5/205 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ DG G S++ F S + +SA D ++ L + L Sbjct: 3 ILLIEDDRIIGDGLKVGLTKLGFSVDWFVSGDAGFQALASAPWDAVILDLSLPERDG--L 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R R Q VP++ ++ +L + G DD + KP E+ AR+ A+ RR Sbjct: 61 DILRQWRQQGQDVPVLILTARDALDQRVQGLQLGADDYLCKPFALAEVAARLEALIRRRH 120 Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 G + + + GE L RE +LE + N G+ + ++Q+ +Y Sbjct: 121 GQLQPELRHGKVVMSPASHSVLLAGEPVTLKSRELALLELFLRNPGRVLTRSQLEEKLYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D+ V N VE HI LRKKL ++ Sbjct: 181 -WDDDVSSNAVEVHIHHLRKKLGSQ 204 >gi|268316384|ref|YP_003290103.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262333918|gb|ACY47715.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 236 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 14/157 (8%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VSNNRAET 128 P++ ++ + L F+ G DD V KP E+LARV A+ RR K R Sbjct: 78 TPVLMLTGLNDREHRLKGFELGADDYVAKPFAPEELLARVEAVLRRAKRRPQPEKRRFRV 137 Query: 129 GPIRV-FSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 G I V DG RD G+ PL E R+L YL+ + G+ V + Q+ ++ L Sbjct: 138 GGIEVDLVDGTVTRD----GQPVPLTDMEFRLLRYLILHHGRTVTREQLLREVWEL-PPT 192 Query: 185 VEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 V+ ++ HI+ LRK + + P+ S +GY + Sbjct: 193 VQTRTIDRHINALRKIMDGEDETSWPIQSVYGIGYRL 229 >gi|297588607|ref|ZP_06947250.1| DNA-binding response regulator [Finegoldia magna ATCC 53516] gi|297573980|gb|EFH92701.1| DNA-binding response regulator [Finegoldia magna ATCC 53516] Length = 218 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S +P I ++ + + ++ F S D + KP R+ ++ ++ Sbjct: 60 LEVLKKIRETSDIPAIMLTAFSDEEYKINAFTSLADGYIEKPFSLPVFKVRIESLIKKYY 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N V ++ G+ + +E IL+Y++ N G+ + + QI +++ Sbjct: 120 GNNETFNYKNTEVNFTSYTAKINGKKVDVNAKELEILKYMIENEGQALTRMQIIDSVWKE 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 180 TDEIPFDRVIDVYIKELRKKLE----LDCIVTIRNVGYKLE 216 >gi|38230268|gb|AAR14189.1| AdeR [Acinetobacter baumannii] Length = 247 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +Q P+I ++ + G DD V KP + E++ARV A+ RR + +N Sbjct: 78 IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQFANKAT 137 Query: 127 ETGPI----RVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 I + +D + E + L E +I+ +++ K + ++ + + Sbjct: 138 NKNKIYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D E V+SH+SKLRKKL + F + + R +GY +D Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLVNVRGVGYRLD 238 >gi|331091527|ref|ZP_08340364.1| hypothetical protein HMPREF9477_01007 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403692|gb|EGG83246.1| hypothetical protein HMPREF9477_01007 [Lachnospiraceae bacterium 2_1_46FAA] Length = 225 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 4/153 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---T 128 ++P+I ++ + + F+ G D+ + KP RE+++RV + R + ++R + Sbjct: 71 KIPVIFLTALDEEKNIVKGFNLGADEYITKPFRPRELVSRVKNVIRLTGIEDSRKQELII 130 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + + + G+ L E ++L NRG+ + + QI S I+ V +N Sbjct: 131 GNVSIHLEEKVAYKNGKQLELTALEYKVLLLFFENRGRILTRNQILSHIWDDSGNFVNDN 190 Query: 189 VVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + +I +LR+K+ N D + + R +GY I Sbjct: 191 TLTVYIKRLREKIEDNPYEPDIIKTVRGMGYKI 223 >gi|323490448|ref|ZP_08095655.1| alkaline phosphatase synthesis transcriptional regulatory protein [Planococcus donghaensis MPA1U2] gi|323395852|gb|EGA88691.1| alkaline phosphatase synthesis transcriptional regulatory protein [Planococcus donghaensis MPA1U2] Length = 235 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 13/138 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRL-------KVSNNRAETGPIRVFSDGRDPEVQGEV 146 G DD + KP RE++AR+ A+ RR + ++ G + V+ D + + E Sbjct: 96 GADDYMTKPFSPREVVARIKAVLRRASNVPTPQQDASQPISLGKLDVYPDRFEVFLNKEQ 155 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN--- 203 +E +L YLM N+ + + + Q+ SA++ +D A + +V+ HIS LR+K+ Sbjct: 156 LEFTPKEFELLVYLMENKNRVLTRDQLLSAVWK-YDFAGDTRIVDVHISHLREKIEENSR 214 Query: 204 KLGFDPVDSKRFLGYSID 221 K F + + R LGY + Sbjct: 215 KPAF--IKTIRGLGYKFE 230 >gi|310640985|ref|YP_003945743.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309245935|gb|ADO55502.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 229 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 99/216 (45%), Gaps = 17/216 (7%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L +GY L +G EG N + +A D+ ++ + E+ R + Sbjct: 20 RGLAFEGYEVLTATNGA--EGLNKM-------LTAEPDLVVLDVMM--PQVDGFEVCRRM 68 Query: 68 R-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----S 122 R S VP++ ++ ++ + D G DD + KP E+LARV A+ RR + Sbjct: 69 REGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRRKTEQQDNN 128 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 NR +++ ++ R+ G+ L +E +L M N + +++ I I+G +D Sbjct: 129 GNRLTFEDLQLDNESREVVRGGKRLELTAKEFELLHLFMQNPKRVLSRDLIMDKIWG-YD 187 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + E NV+E +I+ LR+K G + + R GY Sbjct: 188 YSGESNVLEVYIAMLRQKTEQDGGKRLIRTIRGAGY 223 >gi|299139617|ref|ZP_07032791.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298598545|gb|EFI54709.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 231 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 14/163 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI +++ +P++ ++ ++ D+G D V KP RE+ AR+ A+ RR + Sbjct: 69 RICQSYPHLPVVMLTVRDEEDDIVEALDAGAFDYVTKPFQIRELTARLRAVIRRSHIPVA 128 Query: 125 RAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E G I + +D R E +GE L +E L YLM + G+ V +I +A++G Sbjct: 129 NPEIIIVIGEITLDTDRRRVEKRGEDLHLTPKEYETLRYLMEHAGRPVRHERILTAVWG- 187 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 E + I++LRKK+ + DP + ++ ++GY Sbjct: 188 SAYGNEREYLRVIINQLRKKIED----DPARPLYILTESYIGY 226 >gi|257439801|ref|ZP_05615556.1| phosphate regulon response regulator PhoB [Faecalibacterium prausnitzii A2-165] gi|257197710|gb|EEU95994.1| phosphate regulon response regulator PhoB [Faecalibacterium prausnitzii A2-165] Length = 229 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 6/226 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59 M +++D A +++ G ++ F + E +A ++ ++ L G+ G Sbjct: 1 MIYIVEDDAAIRELEQYALQSSGYGVQSFETSEPFWQAMRAAEPELVILDVMLPGEDGFS 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L+ R A ++P+I ++ S T+ D G DD + KP E L+RV A RR Sbjct: 61 ILKKLRNTPALRRLPIIMVTAKSSELDTVRGLDCGADDYITKPFGIMEFLSRVRAALRRS 120 Query: 120 KVSNNRAETGPIRVFSDG--RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + D V G L +E +L L+ N V + I + Sbjct: 121 APEEKQNVYAFHEILLDNARHSVTVNGTHIDLTYKEYSLLRLLLENTNLVVTRETILQVV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G D +VE V+ HI LRKKL + + + + R +GY + N Sbjct: 181 WGT-DISVESRTVDMHIRTLRKKLGDAGRY--ICTVRKVGYKLADN 223 >gi|196041400|ref|ZP_03108693.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027648|gb|EDX66262.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 229 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 66/152 (43%), Gaps = 8/152 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 64 VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123 Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I V R V L E IL Y M N G + + Q+ S Sbjct: 124 KQLLENEDDILSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNLGIVLTREQLIS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 I+G ++ A ++ V SHI LR KL K + Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|149922748|ref|ZP_01911173.1| two component transcriptional regulator, winged helix family protein [Plesiocystis pacifica SIR-1] gi|149816368|gb|EDM75869.1| two component transcriptional regulator, winged helix family protein [Plesiocystis pacifica SIR-1] Length = 256 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 6/131 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKV---SNNRAETGPIRVFSDGRDPEVQGEVF 147 F+ G DD V KP RE++ RV AI RR + +R + G + V G V G Sbjct: 96 FEVGADDYVTKPFSVRELMLRVRAILRRAGTKAEAPSRLQHGDLEVDVAGHRVWVGGNEI 155 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E R+L L++ G+ + + S ++G+ + V++H+++LRKKL + + Sbjct: 156 RLTALEFRLLATLLSRAGRVQTRDTLLSDVWGMH-AGLTTRTVDTHVTRLRKKLGDAGSY 214 Query: 208 DPVDSKRFLGY 218 +++ R +GY Sbjct: 215 --IETLRGVGY 223 >gi|139439877|ref|ZP_01773242.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC 25986] gi|133774805|gb|EBA38625.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC 25986] Length = 240 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 12/161 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE+V R IR S VP+I ++ ++ + + G DD + KP RE++ARV A++ Sbjct: 64 GERVC---RTIRDTSDVPIIMLTAKGEIEDRIIGLELGADDYLIKPFSPRELVARVRALF 120 Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR ++ A + G + + G V+G+ L E ++L L + G+ + + Sbjct: 121 RRAHQADEPAVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRME 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 + + G +D E ++SH+ K LR KLG DP K Sbjct: 181 LVEKVLG-YDFEGYERTIDSHV----KNLRAKLGDDPKKPK 216 >gi|186683302|ref|YP_001866498.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465754|gb|ACC81555.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 241 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 6/152 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGP 130 +P++ ++ +L + D+G DD + KP E++ARV A+ RR + + ++ G Sbjct: 89 IPVLMLTARDTLGDKITGLDAGADDYMVKPFEMPELMARVRALLRRNSAATSSSDFGWGS 148 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAVEENV 189 +R+ S + + L +E +LE LM + G+RV ++ I I+ L D EE Sbjct: 149 LRLNSSTYEVTYADQPLHLTPKEFALLE-LMVSSGRRVLSRAGIIERIWSLDDPPSEET- 206 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 V+SHI LR KL++ D +++ LGY + Sbjct: 207 VKSHIKSLRYKLKDVGAADDFIETVHGLGYRL 238 >gi|328883961|emb|CCA57200.1| two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 242 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 15/172 (8%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L R IRA S VP++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 68 LTAARRIRASGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 127 Query: 119 --LKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + +TG + F D R+ G L R E +LE +A+ + + + Sbjct: 128 SYARATAGAPDTGDVLSFEDLRMDLATREVTRGGRTVELTRTEFTLLEMFLAHPRQVLTR 187 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 QI A++G FD N ++ ++ LR+K + G +P V + R +GY++ Sbjct: 188 EQILKAVWG-FDFEPSSNSLDVYVMYLRRK--TEAGGEPRLVHTVRGVGYAL 236 >gi|295115378|emb|CBL36225.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SM4/1] Length = 220 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 14/164 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LEL R+IR H P++ ++ + G DD + KP E+ ARV A RR Sbjct: 61 LELCRLIRDHVTCPILFLTARIEEADRVAGLRVGGDDYIMKPFSLAELTARVEAHLRR-- 118 Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + +R F D R G+V L + E I+E L + G+ ++ I+ Sbjct: 119 -ENRIQQKISVRGFGDIVVDYTARTVSRNGQVIELSKVEFDIVELLSLHPGQVFSREAIY 177 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + G +D + VV+ HI +++RNKLG +++ GY Sbjct: 178 EKVRG-YDGTADNAVVKEHI----RRIRNKLGAQNIETVWGCGY 216 >gi|290891363|ref|ZP_06554424.1| hypothetical protein AWRIB429_1814 [Oenococcus oeni AWRIB429] gi|290479009|gb|EFD87672.1| hypothetical protein AWRIB429_1814 [Oenococcus oeni AWRIB429] Length = 224 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 82/160 (51%), Gaps = 4/160 (2%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E + +R + +P++ ++ ++T F G+DD + KPI E+ R++A+ RR Sbjct: 61 VEFAKTVRQLNENIPILFVTARDDIKTKKAGFRVGIDDYLVKPIDLDELKLRISAVLRRA 120 Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S N + E G + + S+ + G PL RE IL +++ G+ ++ ++ + Sbjct: 121 NISQNQKIEIGNLLLKSEEISASINGVPIPLTVREFNILFKMLSFAGRAFSRAELLDDFW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 A V+ +I+KLR+K ++ F+ +++ LGY Sbjct: 181 DTESNA-SLRAVDVYITKLREKFKSTNAFE-INTIHGLGY 218 >gi|289628709|ref|ZP_06461663.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 146 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 12/135 (8%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEV 146 D+G DD + KP E+ ARV A+ RR S RA E I + + QG Sbjct: 17 LDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQPLLEHAGISLDPASQQVSFQGSE 73 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 P+ E ++L LM GK V + ++ + +YG + + VE N +E I LRKKL +L Sbjct: 74 VPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG-WQDKVESNTLEVLIHNLRKKLSTEL- 131 Query: 207 FDPVDSKRFLGYSID 221 + + R +GY ++ Sbjct: 132 ---IRTVRGVGYLLE 143 >gi|269137752|ref|YP_003294452.1| DNA-binding response regulator in two-component regulatory system with BasS [Edwardsiella tarda EIB202] gi|267983412|gb|ACY83241.1| DNA-binding response regulator in two-component regulatory system with BasS [Edwardsiella tarda EIB202] gi|304557809|gb|ADM40473.1| Transcriptional regulatory protein basR/pmrA [Edwardsiella tarda FL6-60] Length = 220 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 6/132 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD + KP E+LARV A+ RR++ + NN + I + + G + Sbjct: 91 LDAGADDYLVKPFALAELLARVRALIRRMQGLCNNALQVDDIHLDLSSQQVSCGGLPLEI 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E IL LM G+ +++ + +Y DE + N +E HI LR+ KLG + Sbjct: 151 TPKEFAILTRLMMRAGQTISREVLQQDLYSWQDE-LSSNSLEVHIHNLRR----KLGKNR 205 Query: 210 VDSKRFLGYSID 221 + + R +GY ++ Sbjct: 206 IKTLRGVGYRLE 217 >gi|257867536|ref|ZP_05647189.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873865|ref|ZP_05653518.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257877616|ref|ZP_05657269.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257801592|gb|EEV30522.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257808029|gb|EEV36851.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257811782|gb|EEV40602.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 235 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 10/117 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPIRVFSDGR--------DPEVQG 144 G DD + KP RE+LAR+ AI+RRL+ R E P + G V G Sbjct: 95 GADDYLTKPFSPREVLARMKAIFRRLEPRQQAREEDQPAEILQIGGIQADLTNFQVSVDG 154 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E L +E +L Y M +G+ + + + + I+ FD + +V+ HIS LR+KL Sbjct: 155 EKIFLTPKEFELLVYFMKRKGRVIDRDTLLNRIWN-FDFDGQSRIVDVHISHLREKL 210 >gi|251798749|ref|YP_003013480.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546375|gb|ACT03394.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 18/205 (8%) Query: 31 SLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIR-AHSQVPLIGI 78 SL FE + S+A + + L + ++ E+ R +R S VP++ + Sbjct: 21 SLAFEGYEVSTASNGMEGLRLLLTADPDMLILDVMMPQVDGWEVCRRVREGGSTVPILML 80 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-----KVSNNRAETGPIRV 133 + + + D+G DD + KP E+LARV A+ RR + S+N+ + + Sbjct: 81 TAKDDISDRVKGLDAGADDYLIKPFALEELLARVRALLRRKSDKIDESSSNKIVFDDLAL 140 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D R+ G L +E +L M N + + + I I+G +D + E NV+E + Sbjct: 141 DLDSREAIRSGRRIELTAKEYDLLLLFMQNPRRVLTRDAIMEKIWG-YDFSGESNVLEVY 199 Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGY 218 I+ LR+KL + + R GY Sbjct: 200 IAMLRQKLEEGGAKRIIQTVRGTGY 224 >gi|167760789|ref|ZP_02432916.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704] gi|167661676|gb|EDS05806.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704] Length = 234 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 11/152 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IRA S VP+I +S + + + G DD + KP +E++ARV A+ RR + Sbjct: 65 QVCREIRAKSNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQA 124 Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 E I + V GE +P +E +L +L A+ + + Sbjct: 125 IPKPEIPGEDKGKCVEYPGITINLTNYSVIVDGETVDMPPKELELLYFLAASPNQVFTRE 184 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 Q+ I+G ++ + V+ HI +LR+K+++ Sbjct: 185 QLLDQIWG-YEYIGDTRTVDVHIKRLREKIKD 215 >gi|154506657|ref|ZP_02043114.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149] gi|153793325|gb|EDN75748.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149] Length = 228 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 8/147 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR HS VP+I +S + G DD + KP E+LAR+ A RR Sbjct: 60 MEVMQHIRTHSTVPIIIVSAKDTDADKTLGLGLGADDYITKPFSVTEVLARIKANIRRST 119 Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E G + + E G L +E IL+ L+ N K K Q++S Sbjct: 120 QYSKPEEQEVLMMGDLTINLTNYTVEKNGTKIDLTAKEFEILKLLVQNPQKVYTKEQMYS 179 Query: 176 AIYGLFDEAV-EENVVESHISKLRKKL 201 I+ D + +EN V HIS+LR K+ Sbjct: 180 LIWN--DAYLGDENAVNVHISRLRNKI 204 >gi|121535017|ref|ZP_01666835.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121306430|gb|EAX47354.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 231 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 21/198 (10%) Query: 12 KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71 KDG+I DG + + + + D+ ++ L G E+ R R Sbjct: 25 KDGFITYIAHDG--YQALDKIR-------EQKPDIVVLDLML--PGIDGWEVCRRARKIG 73 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGP 130 +P++ ++ L + G DD V KP RE++ARV AI RR K++ A+ P Sbjct: 74 DIPILMLTARDEEADRLIGLEMGADDYVTKPFSAREVVARVRAILRRSHKIA---AQPEP 130 Query: 131 IRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 I+V + D E E+ + E +IL+ L N+G+ ++ Q+ + G E Sbjct: 131 IKVGNLLIDAERHVIIKDDEILDMTPTEFKILQLLATNKGRVFSRLQLIEQVQGYASEGY 190 Query: 186 EENVVESHISKLRKKLRN 203 E ++ HI +R+K+ N Sbjct: 191 ERT-IDVHIKNIRRKIEN 207 >gi|253752080|ref|YP_003025221.1| response regulator protein [Streptococcus suis SC84] gi|251816369|emb|CAZ52000.1| response regulator protein [Streptococcus suis SC84] Length = 234 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 12/174 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S VP++ +S S + + G DD V KP +RE+ ARV A+ RR + Sbjct: 61 LEVARTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSE 120 Query: 121 VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + G + + D + G+ L RE +L +L + G+ + + Sbjct: 121 LPETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTR 180 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY I N Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYFIKGN 233 >gi|261339169|ref|ZP_05967027.1| hypothetical protein ENTCAN_05392 [Enterobacter cancerogenus ATCC 35316] gi|288319013|gb|EFC57951.1| DNA-binding response regulator SrrA [Enterobacter cancerogenus ATCC 35316] Length = 235 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 7/147 (4%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IR ++ +P+I IS S + ++G DD + KP +E++AR+ A++RR Sbjct: 61 LEICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G I DP + G+ L RE +L + + G+ ++ ++ Sbjct: 121 QAMGQAQNDGHIHAHGLTLDPLARTVRLNGQEVDLTPREFELLYFFARHPGEVFSRLELL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++G E E+ V +HI++LR K+ Sbjct: 181 EQVWGYQHEGY-EHTVNTHINRLRIKI 206 >gi|209974323|gb|ACJ04041.1| CsrR [Streptococcus pyogenes serotype M3] Length = 228 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + +P E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVRPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|167579523|ref|ZP_02372397.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] Length = 225 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 30/185 (16%) Query: 45 DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 DV ++ L G G +L R I + P++ +S + + +G DD + KP Sbjct: 47 DVITLDRMLPGVDGLTILTTMRSIGVRT--PVLMLSALGDVDERVRGLRAGGDDYLTKPF 104 Query: 104 HHREILARVAAIYRRLKVSNNRAET----GPI-------RVFSDGRDPEVQGEVFPLPRR 152 E+ AR+ + RR + S ET GP+ +V+ DG E+ LP Sbjct: 105 DPEEMTARLEVLLRRSQASPAPFETTLAVGPLTLDLISRKVYRDG------AEIALLPT- 157 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 E R+LE++M + G+ + + +F A++G FD N+++ H+ +LRKK+ DP D Sbjct: 158 EYRVLEFMMRHAGQTITRMMLFEAVWGYHFDPGT--NLIDVHMGRLRKKI------DPPD 209 Query: 212 SKRFL 216 + + Sbjct: 210 ATPMI 214 >gi|15616589|ref|NP_244895.1| two-component response regulator [Bacillus halodurans C-125] gi|10176652|dbj|BAB07746.1| two-component response regulator [Bacillus halodurans C-125] Length = 236 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R ++P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 63 MEVCREVRKQFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQ 122 Query: 121 VSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S + G + + + + +GE L RE ++ YL + G+ + + + Sbjct: 123 TSGDDQLSYKEISVGDLSIHPEAYLVKKRGESIELTHREFELIHYLAKHLGQVMTREHLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 A++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 183 QAVWG-YDYFGDVRTVDVTVRRLREKVEDNPSYPTWIITRRGVGYYL 228 >gi|154245024|ref|YP_001415982.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159109|gb|ABS66325.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 220 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 102/227 (44%), Gaps = 21/227 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D ++ DG G G +++ + ++ R D ++ L G G V Sbjct: 3 ILVVEDDPVLMDGLKVGLGLAGATVDEATTCADARAALAAGRFDAVVLDVMLPDGSGLDV 62 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L +RA P++ ++ + D G DD + KP E+ ARV AI RR Sbjct: 63 LA---GLRARGNATPVLLLTALDEAPDRVRGLDGGADDYLGKPFDLDELNARVRAIARR- 118 Query: 120 KVSNNRAETGP-IRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RA GP ++ + DP + G L RRE +L LM G ++ +I Sbjct: 119 --GHGRA--GPLLKAGALVLDPATLAATLDGLPIALSRREFAVLSALMERPGVIRSRMEI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +YG + E VE N VE HI LR K+G + +++ R LGY + Sbjct: 175 EERLYG-WQEEVESNAVEVHIHNLRA----KVGRETIETVRGLGYRV 216 >gi|150390626|ref|YP_001320675.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950488|gb|ABR49016.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 101/221 (45%), Gaps = 25/221 (11%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ L D+G EE ++ DV I L+ G +E+ + IR Sbjct: 23 LEKNGFSVLTSDNG-----------EESIELVKNNDVDLIVLDLMLPGIDGIEVCKRIRR 71 Query: 70 ---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 + + P+I ++ + + G DD + KP RE++AR+ A+ RR S + Sbjct: 72 MDDYDKTPIIMLTAMGEETDRILGLELGADDYMTKPFSIRELVARIKAVLRR---SEEKQ 128 Query: 127 ETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 I++ ++ + ++ + L +E ++ L NRGK +++ + ++G Sbjct: 129 TVRAIKLVVKDLMIDTEKHEVRIKDQPIELTLKEFELVRILAENRGKVLSRNLLLDEVWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E V+ HI LRKK+ + + +++ R +GY + Sbjct: 189 -YDYFGETRTVDVHIRHLRKKIGDDQSGEYIETIRGVGYKM 228 >gi|323187842|gb|EFZ73139.1| transcriptional regulatory protein baeR [Escherichia coli RN587/1] Length = 240 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 6/153 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K + AE+ P+ + +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PLMIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ Q+ + +Y + V + ++SHI LR+KL Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212 >gi|302386530|ref|YP_003822352.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302197158|gb|ADL04729.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 229 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 17/208 (8%) Query: 24 VSLEGF----NSLEFEEWLQSSAREDVSAIEAF-LIGKGEKVLELPRIIRAHSQ---VPL 75 ++LEGF ++ E E D A+ F L+ G L R IR + +P+ Sbjct: 19 IALEGFGYEVSAFEMAEDALRHIESDQPALAVFDLMLPGMDGLTAIRRIRKNESLKDIPI 78 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS 135 + ++ + D G DD + KP E+ AR+ ++ RR + ++AE+ + + Sbjct: 79 LILTAKDREFDKVAGLDGGADDYMTKPFGVMELAARIRSLLRR--STRDQAESNELNQYC 136 Query: 136 -----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 R+ G L +E +L+YLM N K V + ++ + I+G +D E + Sbjct: 137 LNLNKKTREVHCDGMKVELTLKEFELLQYLMENHNKVVTRDELLNHIWG-YDYDGETRTL 195 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + HI LR+KL G + + R +GY Sbjct: 196 DMHIRTLRQKLGEN-GGSCIKTVRGVGY 222 >gi|295110582|emb|CBL24535.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 229 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/205 (23%), Positives = 97/205 (47%), Gaps = 9/205 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ + + EE ++ + I L+ LE Sbjct: 6 LVVDDEKLIVKGIRFNLEQDGMEVDC--AYDGEEAVEKAKANKYDIILLDLMLPKMDGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S VP++ ++ + D G DD + KP + E+ AR+ AI RR + Sbjct: 64 VCQQIREFSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRARSE 123 Query: 123 NNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E+G +++ + R + G+ L +E +LE L+ N K ++ + + Sbjct: 124 HEEKEKAKTIESGDLKLDCESRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++G ++ + V+ HI +LR+K+ Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKI 207 >gi|268319896|ref|YP_003293552.1| two-component system response regulator [Lactobacillus johnsonii FI9785] gi|262398271|emb|CAX67285.1| two-component system response regulator [Lactobacillus johnsonii FI9785] Length = 242 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 13/175 (7%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L + ED AI L+ LE+ R +R P+I ++ S+ + D G DD Sbjct: 38 LDLALNEDFDAILLDLMLPDLNGLEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV-----FSD------GRDPEVQGEV 146 + KP E+LAR+ A+ RR+++ RA + V F+D R Sbjct: 98 YIVKPFAIEELLARLRAVLRRVQIE-KRAMGDTMGVQKVIHFNDLTIETANRIVHRGDST 156 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L +RE +L L+ N+ V + Q+ + I+G + +E NVVE ++ LR K+ Sbjct: 157 VDLTKREYNLLMTLIENKNNVVTREQLLNKIWG-PESKIETNVVEVYVRYLRNKI 210 >gi|227889541|ref|ZP_04007346.1| response regulator [Lactobacillus johnsonii ATCC 33200] gi|227850019|gb|EEJ60105.1| response regulator [Lactobacillus johnsonii ATCC 33200] Length = 242 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 13/175 (7%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L + ED AI L+ LE+ R +R P+I ++ S+ + D G DD Sbjct: 38 LDLALNEDFDAILLDLMLPDLNGLEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV-----FSD------GRDPEVQGEV 146 + KP E+LAR+ A+ RR+++ RA + V F+D R Sbjct: 98 YIVKPFAIEELLARLRAVLRRVQIE-KRAMGDTMGVQKVIHFNDLTIETANRIVHRGDST 156 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L +RE +L L+ N+ V + Q+ + I+G + +E NVVE ++ LR K+ Sbjct: 157 VDLTKREYNLLMTLIENKNNVVTREQLLNKIWG-PESKIETNVVEVYVRYLRNKI 210 >gi|237731448|ref|ZP_04561929.1| DNA-binding response regulator [Citrobacter sp. 30_2] gi|226906987|gb|EEH92905.1| DNA-binding response regulator [Citrobacter sp. 30_2] Length = 240 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 9/149 (6%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IR S +P+I IS S + + G DD + KP E++ARV A++RR Sbjct: 64 LEICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRRQ 123 Query: 120 KV--SNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + N R E G I V DP + G+ L RE +L + + G+ ++ Sbjct: 124 EAMSQNLRMEAGIITVHGVEIDPLAREVRLHGKSLDLTPREFDLLYFFARHPGEVFSRQA 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + ++G E E+ V SHI++LR K+ Sbjct: 184 LLDQVWGYQHEGY-EHTVNSHINRLRTKI 211 >gi|182413545|ref|YP_001818611.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177840759|gb|ACB75011.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 228 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 16/166 (9%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L R +RA S +P++ +S S++ + +G DD + KP E+ AR+ A+ RR Sbjct: 65 LSLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRA 124 Query: 120 KVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S R G + + R V G+ L RE +LEYL+ + G+ V K I + Sbjct: 125 SRSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHV 184 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGY 218 + FD + NVV+ +S+LR K+ DP +++ R +GY Sbjct: 185 WDYSFDP--QTNVVDVLMSRLRSKI------DPDKTRIETLRGVGY 222 >gi|260904583|ref|ZP_05912905.1| two component transcriptional regulator, winged helix family protein [Brevibacterium linens BL2] Length = 250 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 11/165 (6%) Query: 45 DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 DV ++ + G G +VL R+ + + VP++ ++ + G DD +NKP Sbjct: 56 DVCVLDVLMPGADGRQVLR--RLRQEENWVPVLLLTQVGEAVERAMALEEGADDYLNKPF 113 Query: 104 HHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI------- 156 E++AR+ A+ RR T P+ V S G + G + RE I Sbjct: 114 DPHELVARIRAVLRRTHSDGPPLATAPVLVSSFGLRVDRVGRRAWMGARELVITPKGFTL 173 Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 LEYLM ++ + + ++++ ++G F+EAV V+S +++LR+ L Sbjct: 174 LEYLMVHQDELIERSRLLEILWG-FEEAVGTRAVDSRVAELRRVL 217 >gi|72160747|ref|YP_288404.1| response regulator receiver [Thermobifida fusca YX] gi|71914479|gb|AAZ54381.1| response regulator receiver [Thermobifida fusca YX] Length = 232 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 33/228 (14%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66 +RAL +GY DGV E L + + V + ++ G L + R+ Sbjct: 21 ERALQLEGYQTRTAADGV-----------ETLAAVHSDPVDLLILDVMMPGVDGLGVCRV 69 Query: 67 IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------- 118 +RA + P++ ++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 70 LRAEGDRTPILMLTARVETSDRVAGLDAGADDYLPKPFELDELLARIRALLRRAAPTTGE 129 Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++V + R + G RV+ GR+ E+ F L LE L N G + + Sbjct: 130 GAAEPLIQVGDLRIDPGARRVWRAGREVELSKTEFDL-------LELLARNAGIVLDHST 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+ I+G +D E + +IS LR+KL + + + R +GY++ Sbjct: 183 IYDRIWG-YDFGPESKNLAVYISYLRRKLEPEGTTPLIQTVRGVGYTL 229 >gi|53728807|ref|ZP_00348249.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208723|ref|YP_001053948.1| phosphate regulon transcriptional regulatory protein PhoB [Actinobacillus pleuropneumoniae L20] gi|126097515|gb|ABN74343.1| phosphate regulon transcriptional regulatory protein PhoB [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 213 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 3/149 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 +Q+P++ ++ S + ++G DD V KP + ++AR+ ++ RR +N+ Sbjct: 58 AQIPILMLTARSSEDDCIVCLNTGADDYVTKPFSPKVLIARIESLLRRTYQNNDIINIDD 117 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + Q + L E ++L + MA+ K ++ Q+ ++G D VE+ V Sbjct: 118 LILDQNAKRVTFQKKEISLSSTEYKLLHFFMAHPEKVYSREQLLDFVWG-NDIYVEDRTV 176 Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +S+I +LRK L GF+ V + R GY Sbjct: 177 DSYIRRLRKSL-EPCGFERYVQTVRGSGY 204 >gi|323700473|ref|ZP_08112385.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. ND132] gi|323460405|gb|EGB16270.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans ND132] Length = 236 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 13/162 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +RA S VP+I ++ + + G DD V+KP RE+LAR+ A+ RR A Sbjct: 67 LRAVSGVPVIMLTGRGEEIDRVVGLEMGADDYVSKPFQLRELLARIRAVLRRYGSGAEEA 126 Query: 127 ------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E G + + + R+ + G L E ILE L N G V + + Sbjct: 127 GDMAAVKAKPGIEIGEVHLNRNARNMTIGGLPVHLTSTEFDILEMLALNMGNVVDRVSLM 186 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 G +E ++ V+ H+S LRKKL + + + +L Sbjct: 187 EKALG-RNEDFDDYVLNVHMSNLRKKLDRNVSIKTIRGRGYL 227 >gi|253573810|ref|ZP_04851153.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847338|gb|EES75343.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 234 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 17/164 (10%) Query: 65 RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R IRA S VP+I +S D+P+ + G DD V KP H ++A++ A RR V Sbjct: 69 RQIRARSNVPIIFLSSRDHPA--DMVMSMQLGADDFVQKPFHFEVLIAKIQATLRR--VY 124 Query: 123 NNRAETGPIRVFSD-----GRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N E +R + GR+ QG + L + E IL+ L+ + + V++ ++ Sbjct: 125 NYNTERVELRTWRGATIEYGRNTVTAEQGTI-ELTKNEMLILKLLVEQKNRIVSREELIR 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +++ + V +N + ++++LRKKL N LG D +++K GY Sbjct: 184 SLWD-NEHFVSDNTLTVNVNRLRKKLEN-LGLDAYIETKVGQGY 225 >gi|256420293|ref|YP_003120946.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256035201|gb|ACU58745.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 235 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/210 (22%), Positives = 95/210 (45%), Gaps = 25/210 (11%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L + GY D V+L+G + LQ + + I ++ G + + + + Sbjct: 18 RYLAEAGY-----DVSVALDG------QSGLQMATENNFQLIILDVMLPGMNGIAVCKAL 66 Query: 68 RAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118 R P++ ++ S + + DSG DD + KP E+LAR+ ++ RR Sbjct: 67 RQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNNDTAAAA 126 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + N + + + + + G+ L E R+LEY+M N + +++ +I Sbjct: 127 TPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVLSRMEIL 186 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK 204 ++G+ D + VV+ +++ LRKK+ K Sbjct: 187 ENVWGV-DFNMNTKVVDVYVNYLRKKVNRK 215 >gi|153813611|ref|ZP_01966279.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174] gi|149830309|gb|EDM85402.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174] Length = 229 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 9/205 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ + + EE ++ + I L+ LE Sbjct: 6 LVVDDEKLIVKGIRFNLEQDGMEVDC--AYDGEEAVEKAKENKYDIILLDLMLPKMDGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S VP++ ++ + D G DD + KP + E+ AR+ AI RR + Sbjct: 64 VCQQIREFSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRARSE 123 Query: 123 NNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E G +++ + R + G+ L +E +LE L+ N K ++ + + Sbjct: 124 HEEKEKAKTIEAGDLKLDCESRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++G ++ + V+ HI +LR+K+ Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKI 207 >gi|113952823|ref|YP_729925.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113880174|gb|ABI45132.1| DNA-binding response regulator [Synechococcus sp. CC9311] Length = 240 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 85/173 (49%), Gaps = 11/173 (6%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +R +P+I ++ + + ++G DD ++KP + RE+LARV A+ RR Sbjct: 67 LDICRRLRETDVSLPVIIMTSRDEIDDRIAALETGADDFISKPFNVREVLARVKALIRRA 126 Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + S++ E G + + R + G L RE +L+ M + + +++ Sbjct: 127 TFCKSTFSNEFSSDLLEIGKLALNRAERTCTINGTALILTVREFDLLDCFMRHPRQALSR 186 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 Q+ ++G D +ENVV+ + LRKKL + + R +G+++ N Sbjct: 187 GQLIQHVWG-DDYFGDENVVDVFVRYLRKKLEAGGSERVIQTVRGVGFALRMN 238 >gi|62182741|ref|YP_219158.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62130374|gb|AAX68077.1| response regulator in two-component regulatory system with BasS (OmpR family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322717242|gb|EFZ08813.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 222 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/227 (23%), Positives = 100/227 (44%), Gaps = 21/227 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +GF+++ E S + ++ L + + + Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYACDGFSTVRAAEHSLESGHYSLMVLDLGLPDE-DGLH 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 L RI + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 62 FLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 L V N G + + DG++ L +E +L LM G V + + Sbjct: 122 QGESELTVGNLTLNIGRHQAWRDGQE-------LTLTPKEYALLSRLMLKAGSPVHREIL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ IY +D N +E HI LR+K+G + + R GY + Sbjct: 175 YNDIYN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216 >gi|158318323|ref|YP_001510831.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113728|gb|ABW15925.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 229 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 8/142 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ A VP + ++ + + + G DD V KP E++ARV AI RR +++ Sbjct: 69 RLRNAGRDVPTLFLTARDTTEDKVHGLTLGGDDYVTKPFVVSELVARVRAILRRAGMADG 128 Query: 125 RAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E P+R DPE + G + L E R+L YL+ N K + + Q+ ++G Sbjct: 129 APE--PLRFADLELDPETREVRRAGRLVELTVTEYRLLHYLLVNARKVLTRAQLLDHVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKL 201 D + V+E+++S LR+K+ Sbjct: 187 -HDFGGDARVLETYVSYLRRKI 207 >gi|313114104|ref|ZP_07799656.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623513|gb|EFQ06916.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 229 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 6/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59 M +++D A +++ G + F S E +A ++ ++ L G+ G Sbjct: 1 MIYIVEDDAAIRELEQYALQSSGYEVTSFESSESFWQAMHAAEPELVILDVMLPGEDGFS 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L+ R + ++P+I ++ S T+ D G DD ++KP E L+RV A RR Sbjct: 61 ILKKLRNTPSLRRLPIIMVTAKSSELDTVRGLDCGADDYISKPFGIMEFLSRVRAALRRS 120 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + N I + + + V G L +E +L L+ N V + I + Sbjct: 121 APEARPNVLSFHEILLDNARHNVTVSGTPVELTYKEYSLLRLLLENTNLVVTRETILQVV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D +VE V+ HI LRKKL + + + + R +GY + Sbjct: 181 WGT-DISVESRTVDMHIRTLRKKLGDAGKY--ICTVRKVGYKL 220 >gi|296102122|ref|YP_003612268.1| hypothetical protein ECL_01761 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056581|gb|ADF61319.1| hypothetical protein ECL_01761 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 234 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 78/163 (47%), Gaps = 11/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S VP+I ++ L G DD V KP + E++ARV A+ RR K + Sbjct: 70 LRRESTVPVIMVTALDQDVDKLMGLRLGADDYVIKPFNPSEVVARVEAVLRRTKAHVQQV 129 Query: 127 ETGPIR-----VFSDGRDPEVQ-GE--VFP-LPRRERRILEYLMANRGKRVAKTQIFSAI 177 P+R V+ D EV GE V P L E ++L YL+ N K ++ ++ +A Sbjct: 130 AAMPLRTPFITVYPDDFYIEVTVGEEVVCPVLTTTEFKLLTYLVRNPRKVCSREELLNAC 189 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + V+SH+SKLRKKL +S R +GY + Sbjct: 190 LPEGDTL--DRTVDSHMSKLRKKLELAGLHGVPESIRGMGYRL 230 >gi|291618228|ref|YP_003520970.1| TctD [Pantoea ananatis LMG 20103] gi|291153258|gb|ADD77842.1| TctD [Pantoea ananatis LMG 20103] Length = 228 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 113/216 (52%), Gaps = 17/216 (7%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 +AL + G+ + DG++++ +SL+ E++ + DVS + + + + L R+ Sbjct: 23 KALTQKGFAVDWVADGLAVD--HSLQSEDY--ALVVLDVS------LPRLDGIEVLTRLR 72 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R VP++ ++ +L + ++G DD + KP E+ AR+ A+ RR + + + + Sbjct: 73 RRGQTVPVLMLTARTTLDDRVRGLNTGADDYLTKPFELDELDARLRALLRRSQGQSPQNQ 132 Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 T G + + +G + + P RE +L LM +G+ V++ ++ + L DEA Sbjct: 133 TLGQLVLNGEGYFLLAEKPLALTP-RESSVLTTLMQRQGRPVSRQHLYEQTFTLADEASP 191 Query: 187 ENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 E+ +E ++ ++RKKL G D + + R LGYS++ Sbjct: 192 ES-IELYVHRVRKKLA---GSDVGIVTLRGLGYSLE 223 >gi|260461766|ref|ZP_05810012.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|319785311|ref|YP_004144787.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032407|gb|EEW33672.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|317171199|gb|ADV14737.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 371 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 17/194 (8%) Query: 36 EWLQ--SSAREDVSAIEAFLI--------GKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85 EW + S AR S I L+ G G L R + P+I ++ +++ Sbjct: 28 EWAKDLSEARYHASGIPYGLVLLDINLPDGNGLDYLREMR--KGRDSTPVIIVTARHTVE 85 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGE 145 ++ ++G D + KP RE+ AR+ A+ R G + + + R + G+ Sbjct: 86 DRIEGLNAGAADYLVKPFDPRELSARIHAVARSHGNFPKPYSVGALSINAAERRVALDGQ 145 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 L RE IL+ +++ G V K +I + L E+ E N VE ++S+LRK K+ Sbjct: 146 PVNLTAREWAILDCVLSRPGAVVLKRKIEEELLSLGSES-ESNTVEVYVSRLRK----KI 200 Query: 206 GFDPVDSKRFLGYS 219 G D + + R LGYS Sbjct: 201 GRDRIATLRGLGYS 214 >gi|258624938|ref|ZP_05719865.1| DNA-binding response regulator [Vibrio mimicus VM603] gi|258582794|gb|EEW07616.1| DNA-binding response regulator [Vibrio mimicus VM603] Length = 219 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 22/216 (10%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL + G++ DG+ + EEW DV ++ L K + + L I Sbjct: 19 ALDQTGWVPELSQDGI--DALYRATAEEW-------DVIVLDLGL-PKLDGLTVLKGIRD 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 + P++ +S +L ++ ++G DD + KP E++AR+ A RR S N + Sbjct: 69 ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPV 126 Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 + S D R +V +G+ L E +++ Y M N K +++T++ IY FD Sbjct: 127 MQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFMHNPEKVISRTELVEHIYKQDFDR- 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E I ++RK K+ D + + R LGY + Sbjct: 186 -DSNTIEVFIGRIRK----KIAPDVIKTVRGLGYQL 216 >gi|170720379|ref|YP_001748067.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169758382|gb|ACA71698.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 232 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 82/161 (50%), Gaps = 8/161 (4%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE L + R +R P++ ++ + D G DD V KP+ R +LAR+ Sbjct: 57 LMLPGEDGLSICRRVRGQYAGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARI 116 Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 A+ RR + + + + G + + + R+ + ++ L E +L L +N G+ ++ Sbjct: 117 QALLRRSEPAQGKTQELAFGALSIDNRLREARLGEQLIELTGAEFDLLWLLASNAGRVLS 176 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 + QIF+A+ G+ + ++ ++ ISK+R K+G DP+ Sbjct: 177 REQIFTALRGVGYDG-QDRSIDVRISKIRP----KIGDDPI 212 >gi|114764425|ref|ZP_01443651.1| probable two-component response regulator [Pelagibaca bermudensis HTCC2601] gi|114543179|gb|EAU46197.1| probable two-component response regulator [Roseovarius sp. HTCC2601] Length = 244 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 107/229 (46%), Gaps = 15/229 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++DD V++ AL D G + ++ L D++ I+ L +GE Sbjct: 13 VIAIVDDDPQVRETLSALMHDSGFAAVSCADIDAFHALGDPPPVDLALIDLRL--RGESG 70 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L +R ++P++ ++ + ++G DD + KP + RE++AR+ A+ RR Sbjct: 71 LTLAIHLRERHEIPIVMLTGVGDEIDKIIGLETGADDYLIKPFNPRELVARIRAVLRRYG 130 Query: 121 VSNNRAET--------GPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ RA G R+ D R + GE PL E R+LE+L N + V + Sbjct: 131 HASARAVAPGKRKIVFGEKRIDLDARRLLDGTGEEVPLTNAEYRLLEFLARNPERVVPRE 190 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGY 218 ++ A+ G + + V+ I +LR+K+ ++ PV ++R GY Sbjct: 191 ELLEAL-GADTQRYVDRTVDVLILRLRRKI-ERVPAKPVHLQTRRARGY 237 >gi|52140967|ref|YP_085862.1| response regulator [Bacillus cereus E33L] gi|51974436|gb|AAU15986.1| response regulator [Bacillus cereus E33L] Length = 230 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 7/149 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 LE+ RIIR S VP++ +S + G DD + KP E+ ARV A I R Sbjct: 62 LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K S I++ DP E G++ L +E IL+ + N+ + K QI+ Sbjct: 122 KYSATETTEKTIQIGDLTIDPINFTVEKNGKLLKLTLKEFEILKLFVKNQNRVFTKAQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 + I+ + ++NV+ H+ +LR+K+ + Sbjct: 182 TLIWN-EEYYGDDNVINVHMRRLREKIES 209 >gi|73539148|ref|YP_299515.1| two component transcriptional regulator [Ralstonia eutropha JMP134] gi|72122485|gb|AAZ64671.1| two component transcriptional regulator, winged helix family [Ralstonia eutropha JMP134] Length = 235 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 13/163 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +RA P++ ++ ++ + ++G DD + KP +E+ AR+ A+ RR Sbjct: 70 LDVLRALRARGVSTPVLILTARDAIADRVAGLNAGADDYLVKPFDLQELAARMHALARR- 128 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + RAE G I + R+ + GE L RE +L LMA GK + Q+ Sbjct: 129 --AEGRAEPILSYGAISLNPATREVTLNGEPVHLSAREFSLLSALMARPGKVWSVAQLQE 186 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y +D+ V N VE +I LRKK L + + R +GY Sbjct: 187 RLYS-WDDEVGSNTVEVYIHALRKKFGAAL----IRNIRGVGY 224 >gi|94986440|ref|YP_605804.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94556721|gb|ABF46635.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 219 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 3/158 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+L + +R +S P++ +S +Q + ++G DD + KP E+ AR+ A+ RR Sbjct: 61 LDLVQALRQYSSTPVLVLSARSGVQERVAGLNAGADDYLTKPFAMPELDARITALLRR-T 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + V + L E RILE +M + ++ I S +YG Sbjct: 120 AAGTGVNLGNTSLSTSSLLLTVNDKNVNLTEHEARILELMMRTPERVFSRADIESHLYGW 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E N VE IS+LRKKL + + R +GY Sbjct: 180 --ETPNSNSVEVRISQLRKKLEQAQSDLRIRTIRNVGY 215 >gi|332292108|ref|YP_004430717.1| two component transcriptional regulator, winged helix family [Krokinobacter diaphorus 4H-3-7-5] gi|332170194|gb|AEE19449.1| two component transcriptional regulator, winged helix family [Krokinobacter diaphorus 4H-3-7-5] Length = 227 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 11/164 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSL---QTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E +IRA+S + I+ + + + + FD+G DD + KPI + ++++V A+ R Sbjct: 65 IEACEVIRANSDLDQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVKALLR 124 Query: 118 RLK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R K VS+ + G + + + E LPR+E +L L + GK + I Sbjct: 125 RFKEEGVSSQITKVGKLVINREEYKVYKGKEELSLPRKEFELLSLLTSKPGKVFTREDIL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++GL + V ++ HI +KLR K+G + + + +GY Sbjct: 185 DKVWGL-EVVVGGRTIDVHI----RKLREKIGDESFKTVKGVGY 223 >gi|306825161|ref|ZP_07458503.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432597|gb|EFM35571.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 235 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 87/175 (49%), Gaps = 13/175 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP+I +S S + + G DD V KP +RE+ ARV A+ RR Sbjct: 61 LEVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120 Query: 121 VS------NNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 ++ ++ +T P++ + D + GE L RE +L +L ++ G+ + Sbjct: 121 LASVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223 + + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKNN 234 >gi|293394940|ref|ZP_06639230.1| DNA-binding response regulator [Serratia odorifera DSM 4582] gi|291422691|gb|EFE95930.1| DNA-binding response regulator [Serratia odorifera DSM 4582] Length = 238 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 2/150 (1%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L + R +R +++P++ ++ L + G DD + KP RE++ARV Sbjct: 59 LMLPGSDGLSVCRELRRFTELPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 118 Query: 113 AAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 I RR + + ++ E + + QG+V L E R+L+ L + G ++ Sbjct: 119 KTILRRCYRPAESQQEDALLHIDEPRFQASYQGQVLDLTPAEFRLLKTLASQPGNVFSRE 178 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q+ + +Y + V + ++SHI LR+KL Sbjct: 179 QLLNNLYDDY-RVVTDRTIDSHIKNLRRKL 207 >gi|118479940|ref|YP_897091.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|196043892|ref|ZP_03111129.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225866817|ref|YP_002752195.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228948563|ref|ZP_04110842.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229187082|ref|ZP_04314231.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|118419165|gb|ABK87584.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|196025228|gb|EDX63898.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225790943|gb|ACO31160.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228596391|gb|EEK54062.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228811062|gb|EEM57404.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 229 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 8/152 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 64 VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123 Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I V R V L E IL Y M N+G + + Q+ S Sbjct: 124 KQLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMRNQGIVLTREQLIS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 I+G ++ A ++ V SHI LR KL K + Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|118473019|ref|YP_889726.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2 155] gi|160012470|sp|A0R3I8|MPRA_MYCS2 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|118174306|gb|ABK75202.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2 155] Length = 230 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 21/188 (11%) Query: 31 SLEFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LELPRIIRAHSQ-VPLIGI 78 SL F + A++ V A++A + + + LE+ R +R+ +P++ + Sbjct: 21 SLSFNGYSVELAQDGVEALDAITNNRPDALILDVMMPRLDGLEVCRQLRSTGDDLPILVL 80 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD-G 137 + S+ + D+G DD + KP E+LAR+ A+ RR VS++ ++ + FSD Sbjct: 81 TARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR-TVSDDSGDSQKM-TFSDLT 138 Query: 138 RDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 DP + G L R E +LE L+AN + + +++I ++G FD N +E Sbjct: 139 LDPVTREVTRGGRQISLTRTEFSLLEMLIANPRRVLTRSRILEEVWG-FDFPTSGNALEV 197 Query: 193 HISKLRKK 200 +I LR+K Sbjct: 198 YIGYLRRK 205 >gi|52078905|ref|YP_077696.1| sensory transduction protein YclJ [Bacillus licheniformis ATCC 14580] gi|52784279|ref|YP_090108.1| YclJ [Bacillus licheniformis ATCC 14580] gi|319648791|ref|ZP_08003002.1| hypothetical protein HMPREF1012_04041 [Bacillus sp. BT1B_CT2] gi|52002116|gb|AAU22058.1| hypothetical sensory transduction protein YclJ [Bacillus licheniformis ATCC 14580] gi|52346781|gb|AAU39415.1| YclJ [Bacillus licheniformis ATCC 14580] gi|317389210|gb|EFV70026.1| hypothetical protein HMPREF1012_04041 [Bacillus sp. BT1B_CT2] Length = 228 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 33/226 (14%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 K+G+ F DG LEG+N + +W D+ I+ L + + + +R Sbjct: 20 FAKEGFETEFVHDG--LEGYNRFKSGDW-------DLLIIDIML--PSMDGVTICKKVRE 68 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-------VS 122 S VP+I ++ + + F+ G DD V KP ++AR+ A+ RR + Sbjct: 69 ESTVPIIMLTAKDTESDQVLGFELGADDYVTKPFSPLALVARIKAVSRRYQNAGRQDSAD 128 Query: 123 NNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ ET ++ R+ + G ++ L +E +L YL+ + + ++ Q+ ++G + Sbjct: 129 SDTLETEHFKINKKTREVFLDGVQIQNLTPKEFDLLYYLVQSPKQVFSREQLLEQVWG-Y 187 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYSID 221 +E V+ HI +LRKKL + DS+ FL GY D Sbjct: 188 QFYGDERTVDVHIKRLRKKLGS-------DSRPFLYTVWGVGYKFD 226 >gi|184154491|ref|YP_001842831.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|260662552|ref|ZP_05863447.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] gi|183225835|dbj|BAG26351.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|260553243|gb|EEX26186.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] Length = 235 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 20/202 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY + DG EE LQ E I L+ LE+ + +RA Sbjct: 22 LEKEGYEVVVAYDG-----------EEALQKVESESPDLIVLDLMLPKIDGLEVAKQVRA 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--- 126 P+I ++ S + + G DD V KP +RE++ARV A RR + + A Sbjct: 71 KRSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDATVSPANDD 130 Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + + D +GE L RE +L YL + G+ + + + ++G + Sbjct: 131 RTADIKVGDLTIHPDAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHLLQTVWG-Y 189 Query: 182 DEAVEENVVESHISKLRKKLRN 203 D + V+ + +LR+K+ + Sbjct: 190 DYFGDVRTVDVTVRRLREKIED 211 >gi|116873865|ref|YP_850646.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742743|emb|CAK21867.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 236 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 18/122 (14%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--------------GPIRVFSDGRD 139 G DD + KP RE++AR+ AI RR + +AE+ G +++ D + Sbjct: 95 GADDYMTKPFSPREVVARIKAILRR---TEGKAESIEEKTEDMEATILIGDLKILPDSYE 151 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 +Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR Sbjct: 152 VYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRD 210 Query: 200 KL 201 K+ Sbjct: 211 KI 212 >gi|304320850|ref|YP_003854493.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis HTCC2503] gi|303299752|gb|ADM09351.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis HTCC2503] Length = 230 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 5/152 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGP 130 +P+I ++ + D+G DD V KP E+ +R+ A+ RR + S G Sbjct: 78 IPIILLTARAEEGDRVRGLDTGADDYVVKPFSVSELSSRIKAVLRRARPSLIAEAVTCGD 137 Query: 131 IRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 I++ + R + EV P E R+L++L+ N G+ ++ Q+ +A++G D VE Sbjct: 138 IQIDRAAHRVRRGEKEVHLGP-TEFRLLDHLIQNPGRVFSREQLLNAVWG-SDVFVEART 195 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V+ HI +LRK L +P+ + R GY+++ Sbjct: 196 VDVHIGRLRKALNAHGHQNPIRTVRSAGYALE 227 >gi|116049581|ref|YP_791614.1| two-component response regulator KdpE [Pseudomonas aeruginosa UCBPP-PA14] gi|296389989|ref|ZP_06879464.1| two-component response regulator KdpE [Pseudomonas aeruginosa PAb1] gi|313106655|ref|ZP_07792876.1| two-component response regulator KdpE [Pseudomonas aeruginosa 39016] gi|115584802|gb|ABJ10817.1| two-component response regulator KdpE [Pseudomonas aeruginosa UCBPP-PA14] gi|310879378|gb|EFQ37972.1| two-component response regulator KdpE [Pseudomonas aeruginosa 39016] Length = 230 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/225 (28%), Positives = 105/225 (46%), Gaps = 25/225 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF---EEWLQSSA--REDVSAIEAFLIGK 56 +LIDD ++ F ++ +G+ LE EE L +A R D+ ++ L + Sbjct: 8 ILLIDDEPQIRK-----FLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGLPDR 62 Query: 57 -GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ +L R +R SQVP++ +S S + D G +D V KP +E LARV + Sbjct: 63 DGQDIL---RDLREWSQVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVL 119 Query: 116 YRRLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R+ + GP++V R ++G L R+E +L L + G+ V + Q Sbjct: 120 LRQAAQGESPEAAVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQ 179 Query: 173 IFSAIYGLFDEAVEENVVESH-ISKLRKKLRNKLGFDPVDSKRFL 216 + I+G +V ++H + + LR KLG DP S RFL Sbjct: 180 LLKDIWG------PTHVEDTHYLRVVVGHLRQKLGDDPA-SPRFL 217 >gi|149365128|ref|ZP_01887163.1| putative two-component response regulator [Yersinia pestis CA88-4125] gi|165926923|ref|ZP_02222755.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. F1991016] gi|165935925|ref|ZP_02224495.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. IP275] gi|167422671|ref|ZP_02314424.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167467549|ref|ZP_02332253.1| putative two-component response regulator [Yersinia pestis FV-1] gi|218930056|ref|YP_002347931.1| putative two-component response regulator [Yersinia pestis CO92] gi|229838602|ref|ZP_04458761.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899168|ref|ZP_04514311.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. India 195] gi|115348667|emb|CAL21612.1| putative two-component response regulator [Yersinia pestis CO92] gi|149291541|gb|EDM41615.1| putative two-component response regulator [Yersinia pestis CA88-4125] gi|165916070|gb|EDR34677.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. IP275] gi|165921274|gb|EDR38498.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. F1991016] gi|166958378|gb|EDR55399.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. MG05-1020] gi|229687570|gb|EEO79643.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229694968|gb|EEO85015.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. PEXU2] Length = 235 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 23/222 (10%) Query: 1 MFVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGK 56 M +LI +D A +++G + + EG+ + E +Q+ A ++ I ++ Sbjct: 1 MKILIAEDNAHIRNGLMEVLAH-----EGYRPIAAENGVQALALYRQQQPDFIILDIMMP 55 Query: 57 GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 ++ R IR H Q P+I +S + + G DD ++KP E+ AR+ I Sbjct: 56 ELDSYKVCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTI 115 Query: 116 YRRL--KVSNNRAETG----PIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRV 168 RR KV + + G + VF + ++GE L RE IL YL ++G+ V Sbjct: 116 VRRCLRKVPESAEDAGFPFGDLMVFPN-ELCAIRGETRLELSLREVNILRYLYQHKGRVV 174 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 + +F A++G +D + ++ HISKLRK + DPV Sbjct: 175 TRDMLFDAVWG-YDHLPQSRTLDQHISKLRKTIE----LDPV 211 >gi|295132835|ref|YP_003583511.1| two-component system response regulator [Zunongwangia profunda SM-A87] gi|294980850|gb|ADF51315.1| two-component system response regulator [Zunongwangia profunda SM-A87] Length = 237 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/198 (22%), Positives = 96/198 (48%), Gaps = 10/198 (5%) Query: 13 DGYIALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 D + F + G++ EGF +L +E Q ++ + ++ LE+ + +R Sbjct: 14 DAKVCAFINKGLTEEGFEVSIALNGKEGYQMASANKFDLLILDIMLPEMNGLEICKAVRE 73 Query: 70 -HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----VSN 123 ++ VP++ ++ S + +SG DD + KP E++ARV ++ RR + + + Sbjct: 74 ENTHVPILFLTALGSSENIAMGLNSGADDYLAKPFKFIELIARVKSLLRRSRNFNSNIPD 133 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N I+V + G+ L E ++L + G+ +++T++ ++G+ + Sbjct: 134 NSYRFSDIKVNDSSKTVTRNGKKIALTSTEYKLLLAFLKAPGRVISRTELLENVWGV-NY 192 Query: 184 AVEENVVESHISKLRKKL 201 + NVV+ +++ LRKKL Sbjct: 193 DIGTNVVDVYVNYLRKKL 210 >gi|281421933|ref|ZP_06252932.1| phosphate regulon transcriptional regulator PhoB [Prevotella copri DSM 18205] gi|281403987|gb|EFB34667.1| phosphate regulon transcriptional regulator PhoB [Prevotella copri DSM 18205] Length = 231 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 7/137 (5%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 + VP+I ++ + T+ F+ G DD ++KP RE++ RV A+ RR A+ Sbjct: 77 ANVPIIFLTARDTENDTVTGFNIGADDYISKPFSIREVMVRVRAVLRRTAEQAGDADESK 136 Query: 131 IRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 I + D + + GE P + E +L + RGK ++ ++ ++ D Sbjct: 137 IINYQGLQLNLDKKTVSIDGEAIPFTKTEFELLRLFLEERGKVFSRQELIDRVWPK-DVM 195 Query: 185 VEENVVESHISKLRKKL 201 V + V+ +I+++RKK+ Sbjct: 196 VLDRTVDVNITRMRKKI 212 >gi|317055319|ref|YP_004103786.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315447588|gb|ADU21152.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 224 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 8/143 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 I+ ++P+I +S L F+ G+DD + KP +E++ARV A+ R K S N Sbjct: 67 IQKIKKIPVIMLSARGEEYDKLFGFEIGIDDYMVKPFSPKELMARVRAVLNRAKASGNTE 126 Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + + R+ ++ GE + +E +L YL+ N +++ ++ ++G FD Sbjct: 127 DIIKYQGLEINFTAREVKIDGEKVSMTPKEYDLLFYLVRNMNIALSREKLLEEVWG-FDF 185 Query: 184 AVEENVVESHISKLRKKLRNKLG 206 ++ +++HI K LRN LG Sbjct: 186 YGDDRTIDTHI----KMLRNSLG 204 >gi|167464653|ref|ZP_02329742.1| response regulator [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384704|ref|ZP_08058372.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150403|gb|EFX43896.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 230 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 16/172 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R S P++ +S ++ D G D+ + KP + ++LAR+ A+ RR Sbjct: 63 LEICRFLRQSSSTPILFLSSQKDDSVIIEALDQGADEYITKPYNPGQLLARIRALLRRCS 122 Query: 121 V-SNNRAETGPIRVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++N E IR D E QGE L +E +L L +N ++F Sbjct: 123 IRTSNSGENRVIRFPGLSIDLASHMVEAQGETVSLSAKEFALLSLLASNPNHVFRIEELF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 ++ + D + + H+S LRKK+ +P D K R +GY + Sbjct: 183 EKVWSV-DSLGDPRTLIVHVSNLRKKIEP----NPADPKYIITVRGVGYKFN 229 >gi|158340554|ref|YP_001521548.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310795|gb|ABW32409.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 237 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 13/166 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121 +R S+VP+I ++ + + + G DD V KP +E+ +RV +I RR++ Sbjct: 71 VRKASRVPIIMLTALSDVVDRITGLEMGADDYVVKPFSLKELESRVRSILRRMETTKPLP 130 Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 SN G I V ++ R L E +LE L + G+ +++++ + Sbjct: 131 FHHQSNGVIRFGSITVDTNKRQVFKGRSRISLTHMEFSVLELLATHPGEPISRSEFLHKV 190 Query: 178 YGLFDEA-VEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 +G EA V+ VV+ HIS LR+KL + G +P + + +GY++ Sbjct: 191 WGYSHEANVDTQVVDIHISHLRRKLGDSSG-NPKLIHTVHGVGYTL 235 >gi|116630026|ref|YP_815198.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323] gi|116095608|gb|ABJ60760.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus gasseri ATCC 33323] Length = 246 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 13/175 (7%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L + ED AI L+ LE+ R +R P+I ++ S+ + D G DD Sbjct: 42 LDLALNEDFDAILLDLMLPDLNGLEIARRVRQEKTTPIIMMTARDSVIDRVSGLDHGADD 101 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV-----FSD------GRDPEVQGEV 146 + KP E+LAR+ A+ RR+++ RA + V F+D R Sbjct: 102 YIVKPFAIEELLARLRAVLRRVQIE-KRAMGDTMGVQKVVHFNDLTIETANRIVHRGDST 160 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L +RE +L L+ N+ V + Q+ + I+G + +E NVVE ++ LR K+ Sbjct: 161 VDLTKREYNLLMTLIENKNNVVTREQLLNKIWG-PESKIETNVVEVYVRYLRNKI 214 >gi|17549382|ref|NP_522722.1| two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431635|emb|CAD18312.1| probable two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 219 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 86/170 (50%), Gaps = 3/170 (1%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G+ LE+ R +RA S +P++ ++ L + G DD + KP RE++AR+ Sbjct: 51 LMLPGKDGLEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARI 110 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 I RR++ S ++++ +++ + ++G+ L E R+L L G+ +++ Sbjct: 111 KTILRRVQRSGAQSDS-LLQIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRAN 169 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + IY V + V++H+ LR+K+ G + + S +GY +D Sbjct: 170 LLEQIYD-DHRVVTDRTVDTHVKNLRRKMELVSPGTELIHSVYGVGYRLD 218 >gi|323139801|ref|ZP_08074835.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] gi|322394937|gb|EFX97504.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] Length = 227 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 8/130 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149 FD+G DD V KP H E+LAR+ A+ RR + N G +R+ + V G L Sbjct: 91 FDAGADDYVAKPFHMEEVLARIRALLRRRTGHATNELVCGAVRLDTKSGRVVVDGAPVKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM + G+ V++ +I +Y FD + N VE + +LRK KLG D Sbjct: 151 TSHEYRLLAYLMHHSGRVVSRGEIIEHLYDQDFDR--DSNTVEVFVGRLRK----KLGVD 204 Query: 209 PVDSKRFLGY 218 + + R LGY Sbjct: 205 LIQTVRGLGY 214 >gi|308234600|ref|ZP_07665337.1| two component transcriptional regulator, winged helix family protein [Atopobium vaginae DSM 15829] Length = 223 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 2/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126 R+ +P++ ++ Q +D D+G DD + KP E+LAR+ A+ RR V + Sbjct: 68 RSGDSMPILILTARTFTQDKVDGLDAGADDYLTKPFEAPELLARLRALTRRQGDVIIEQM 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + + D + L +E +L+ L++ + V+K + + ++G +A Sbjct: 128 KFADFSLDLSTHDLMCKNHSVHLSGKEFEVLKMLLSAPSRVVSKQDLLTYVWGTTADA-S 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 EN VE+++S LRKKL + + R LGY ++ Sbjct: 187 ENSVEAYVSFLRKKLAYVHSKVQITTLRMLGYRLE 221 >gi|307129734|ref|YP_003881750.1| Phosphate regulon transcriptional regulatory protein phoB [Dickeya dadantii 3937] gi|306527263|gb|ADM97193.1| Phosphate regulon transcriptional regulatory protein phoB [Dickeya dadantii 3937] Length = 231 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 92/201 (45%), Gaps = 23/201 (11%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68 L +D + L DGV N L+ + L + D+ ++ L G G +VL +R Sbjct: 23 LKRDNFQVLLAGDGV-----NGLDMAQRL----KPDLILLDVMLPGMNGTEVLT---ALR 70 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRA 126 S VP+I ++ + G DD V KP H E++ARV A+ RR ++ R+ Sbjct: 71 RKSDVPVIMVTAMGDDTDKIGALRYGADDYVTKPYHPGEVVARVQAVLRRTCGVMTPGRS 130 Query: 127 ET-GPIRVFSDGR-----DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T G + V D D + Q ++ L E +L L+ + + ++ ++ A L Sbjct: 131 LTFGSLEVDLDAMVATVADAQGQRQLLDLTPTEFSLLATLLRAQTRAFSRQELLEAC--L 188 Query: 181 FDEAVEENVVESHISKLRKKL 201 D E VV++HI LRKKL Sbjct: 189 PDSDALERVVDTHIYNLRKKL 209 >gi|325680084|ref|ZP_08159651.1| putative subtilin biosynthesis regulatory protein SpaR [Ruminococcus albus 8] gi|324108247|gb|EGC02496.1| putative subtilin biosynthesis regulatory protein SpaR [Ruminococcus albus 8] Length = 223 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR + P++ ++ + F +G DD + KP E+ AR+AA RR Sbjct: 60 IEVCRRIRDYVPCPIVFLTARIEDSDKVSGFAAGGDDYIIKPFSLEELGARIAAHIRREN 119 Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S + + G + V GE L ++E +ILE L N G+ +K +I+ + Sbjct: 120 RSAAKRDVLLCGSLSVDYGNMTVSSGGEEINLAKKEFQILELLSRNTGQVYSKERIYEKV 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +D + +VV HI +LR KL +++ +GY Sbjct: 180 WS-YDAEGDSSVVAEHIRRLRSKLSKYGEGSHIETVWGMGY 219 >gi|229171432|ref|ZP_04299017.1| Two-component response regulator [Bacillus cereus MM3] gi|228612136|gb|EEK69373.1| Two-component response regulator [Bacillus cereus MM3] Length = 225 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S +P+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKRIRSFSNIPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQHAQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDHHLKTVYGVGYRW 220 >gi|169343589|ref|ZP_02864588.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169298149|gb|EDS80239.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 269 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 8/187 (4%) Query: 27 EGFNSLEF---EEWLQSSAREDVS-AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82 EGFN LE EE L+ + V AI ++ K + L + R IR S P+I ++ Sbjct: 71 EGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDG-LAVCRNIREVSNTPIILLTAKS 129 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDP 140 + L ++ G DD + KP + +LA+ A+ RR N N + + + + Sbjct: 130 QEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTLNDKNILDFNGLTINKLSHEV 189 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 ++ GE L +E +L YL +N G +++ +I ++G +D + V+++I +LR+K Sbjct: 190 KLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWG-YDYFGDIRTVDTNIKRLREK 248 Query: 201 LRNKLGF 207 L +K + Sbjct: 249 LLDKANY 255 >gi|123969361|ref|YP_001010219.1| two-component response regulator [Prochlorococcus marinus str. AS9601] gi|123199471|gb|ABM71112.1| two-component response regulator [Prochlorococcus marinus str. AS9601] Length = 248 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 13/150 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IRA S VP+I ++ ++ + D G DD ++KP +E+ AR+A I RR+ + + Sbjct: 67 RRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPTVS 126 Query: 125 RAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ET G + V ++ R G+ L E +LE L GK V + + Sbjct: 127 VTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGDRISLTYTEFSLLELLFDEPGKVVPRAE 186 Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201 I ++G A + VV+ ++++LR KL Sbjct: 187 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 216 >gi|118591897|ref|ZP_01549292.1| putative transcription regulator protein [Stappia aggregata IAM 12614] gi|118435540|gb|EAV42186.1| putative transcription regulator protein [Stappia aggregata IAM 12614] Length = 245 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 14/174 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE LEL +R S VP++ ++ + ++GVDD ++KP RE++ R+AAI Sbjct: 79 GETGLELAVSLREESSVPILMLTARSETPDRIAGLEAGVDDYLSKPFEPRELMLRIAAIL 138 Query: 117 RRLK----VSNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKT 171 RR + + GP F+ R GE L RE++IL G V + Sbjct: 139 RRGNQQPVIVSEEIHFGPFS-FNSARGELKNGEAMVRLTDREKQILSIFAEQPGATVPRH 197 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGYSIDWN 223 +I D + E V+ I++LR+K+ G +P+ + R +GY + + Sbjct: 198 KIVGD-----DSGLGERTVDVQINRLRRKIETDPG-NPIYLQTVRGIGYRLACD 245 >gi|89895531|ref|YP_519018.1| hypothetical protein DSY2785 [Desulfitobacterium hafniense Y51] gi|89334979|dbj|BAE84574.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 222 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 32/223 (14%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPR 65 + LVK+GY G E +L E + D+ ++ L G GE ++ P+ Sbjct: 20 EEVLVKEGYAVARAYSGT--EALLALPVE-------KPDLILLDLMLPGLSGEDIM--PK 68 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------- 118 + +P+I +S + + G D + KP H +E+LARV R+ Sbjct: 69 L----KGIPVIVVSAKTDVDDKVGLLLEGAADFITKPFHMKELLARVVVGLRKGPEPDKA 124 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 L ++ R +T V+ D EV+ L R E IL+ LM N + + K+ + I Sbjct: 125 VLAFADIRLDTALHTVWV--ADKEVR-----LTRTEYAILKLLMQNPAQVITKSLLLDRI 177 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + E + ++ HIS LR+KLR G D +++ +G+ + Sbjct: 178 SGDTPDCTESS-LKMHISHLRRKLREASGRDYIEAVWGIGFKL 219 >gi|307298063|ref|ZP_07577867.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306916149|gb|EFN46532.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 224 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 9/162 (5%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+L + IR +S++P+I ++ S + + G DD V KP + R ++AR+ A+ RR Sbjct: 60 LDLVKKIRTMYSRIPIIFLTARKSDLDMILGLELGADDYVTKPFNPRALVARIKAVMRRT 119 Query: 120 KVSN---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++S ++ G V G+ L RRE +L+ L N G+ + ++ Sbjct: 120 EISGTLEDKLTIGDAVVNLKSYTVTKNGKSEELTRREFELLKLLAENPGRVFTREELLDK 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G+ D + V+ HISKLR+K+ GF + + R +GY Sbjct: 180 VWGM-DFFGDFRTVDVHISKLREKVGE--GF--IKTVRGVGY 216 >gi|284007315|emb|CBA72665.1| two-component system, OmpR family, response regulator PhoP [Arsenophonus nasoniae] Length = 168 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 2/151 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 ++P++ ++ Q + +SG DD V KP H EILAR+ A+ RR +++ + G Sbjct: 11 KLPILILTARERWQEKVIALNSGADDYVTKPFHLEEILARIQALMRRNSGLASQILQLGD 70 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + ++ ++ + L E ILE LM N K V+K + +Y E E + + Sbjct: 71 FVIDMSRKEFTIKDKNIKLTAFEYTILETLMRNNSKVVSKESLMRQLYP-DAELRESHTI 129 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + +LRKK+ + D + + R GY D Sbjct: 130 DVLMGRLRKKIMQEWPNDVIVTVRGQGYRFD 160 >gi|229059658|ref|ZP_04197036.1| DNA-binding response regulator [Bacillus cereus AH603] gi|229166864|ref|ZP_04294611.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228616492|gb|EEK73570.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228719671|gb|EEL71270.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 225 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/156 (22%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ ++ + F G DD + KP E++ RV A+ +R +++ +++ Sbjct: 68 LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQITVSQS 127 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + V + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 128 IQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + +L + + R LGY ++ Sbjct: 187 NERTLDVHINRLREKFQEELSKFSIRTIRGLGYRLE 222 >gi|116253844|ref|YP_769682.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115258492|emb|CAK09596.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 225 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 21/171 (12%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +RA +Q ++ ++ + + + D G DD + KP E ARV + RR Sbjct: 60 LDVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDIAEFEARVRVLLRR- 118 Query: 120 KVSNNRAET---GPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + R+ T G I R FS G P +P RE +LE L GK VAK Sbjct: 119 -QAGLRSATVGFGGITFDLNSRTFSSGDTP------LDIPARELGLLEILFMRAGKVVAK 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I ++ FD+ + N +E ++S+LRK+L + G V + R +GY +D Sbjct: 172 EAIIQSLTA-FDDDISANAIEQYVSRLRKRL-SPYGL-TVKTARGIGYYLD 219 >gi|319796301|ref|YP_004157941.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315598764|gb|ADU39830.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 218 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 6/149 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 P++ ++ L ++ D G DD + KP RE+LAR+ AI RR +++ +G + Sbjct: 73 TPVLVLTARDGLDDRINSLDLGADDYLLKPFEFRELLARMRAIVRRRDGAAHSLVGSGVL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 ++ R+ V G L RE +L L+ G +++ Q+ + IYG + E V N ++ Sbjct: 133 QLDLTTREVLVNGAREALTAREFALLHALLERPGAILSREQLENRIYG-WGEEVTSNAID 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I +R+ KLG + + + R LG+ + Sbjct: 192 VLIHGMRR----KLGAESIRNVRGLGWRV 216 >gi|311748341|ref|ZP_07722126.1| DNA-binding response regulator YycF [Algoriphagus sp. PR1] gi|311302774|gb|EAZ81098.2| DNA-binding response regulator YycF [Algoriphagus sp. PR1] Length = 229 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 10/135 (7%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDP---EVQGEV 146 FD G DD + KPI R +++R+AA++RR LK + + I+ + R + G+ Sbjct: 99 FDVGADDYITKPIKPRALMSRIAALFRRELKKEQEQVQI-KIKDLTIDRGSYTIDKSGKT 157 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 LP++E +L +L N ++ ++ I+G D V V+ HI +K+R K+G Sbjct: 158 ITLPKKEFELLYFLAKNPNMVFSRDELLQNIWGA-DVFVLARTVDVHI----RKVREKIG 212 Query: 207 FDPVDSKRFLGYSID 221 D + + + +GY D Sbjct: 213 DDYITTVKGVGYKFD 227 >gi|256397578|ref|YP_003119142.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363804|gb|ACU77301.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 230 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 21/192 (10%) Query: 23 GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82 G+++ GF E + DV ++ +I +VL R +R +Q P+I ++ Sbjct: 19 GLAILGFEVRETDADADPQVAADVVLLDCGVIDN--EVLAYCRRLRRRTQAPIIAVTQRV 76 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-------------TG 129 LQ L ++G+DD +P +E+ AR+ RL V+ R + G Sbjct: 77 DLQAWLRGHEAGIDDYAVQPFGLQELAARL-----RLAVAPGRDQPAPVPAGPPRRLTAG 131 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P+ V D R V G L +E ++L LM G+ V + ++ + ++ E E + Sbjct: 132 PLVVSEDARAVTVHGTRIDLRPKEYQLLVVLMRQLGRAVPREELVAQLWPAGWEGAERS- 190 Query: 190 VESHISKLRKKL 201 +E H++ LR K+ Sbjct: 191 LEVHVASLRAKI 202 >gi|167766879|ref|ZP_02438932.1| hypothetical protein CLOSS21_01396 [Clostridium sp. SS2/1] gi|167711427|gb|EDS22006.1| hypothetical protein CLOSS21_01396 [Clostridium sp. SS2/1] Length = 222 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 84/160 (52%), Gaps = 3/160 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ S L + G DD + KP + + + AR++A+ +R Sbjct: 64 VCRAIREKSEVPIIVVTSRDSEMDELMSINLGADDFITKPYNTQILSARISAMLKRTHKE 123 Query: 123 --NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N+ + +++ + + ++ L + E RIL L+ ++ V++ Q+ +++ Sbjct: 124 KVNDFLQYQGLKLQLNSSTVIYKDQIIELSKNEMRILYTLLQHKESIVSRDQLMESLWQ- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E +++N + +++++RKKL D + +KR GY I Sbjct: 183 SNEFIDDNTLTVNVNRVRKKLEAAGLKDFIKTKRGQGYMI 222 >gi|163784708|ref|ZP_02179524.1| Two-component response regulator czcR [Hydrogenivirga sp. 128-5-R1-1] gi|159880026|gb|EDP73714.1| Two-component response regulator czcR [Hydrogenivirga sp. 128-5-R1-1] Length = 196 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 84/168 (50%), Gaps = 20/168 (11%) Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 L IIR + Q P++ ++ + Q + + G DD ++KP E++ARV A+ RR Sbjct: 40 LCEIIRKKNIQTPILMLTAKSATQDKVKGLNIGADDYLSKPFDMEELIARVKALIRRSST 99 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 LK++N + V+ +G+ E+ ++F IL+ L+ NRGK V+ + Sbjct: 100 NKSNVLKINNYTFDIENRIVYKNGKKIELTPKLFC-------ILQQLLINRGKIVSYDAL 152 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + D +E V ++I LRK L +K D + + +GY I+ Sbjct: 153 MNRCWDITDYPTKE-TVRANIKLLRKLLEDK---DLIKNIPGVGYKIE 196 >gi|8515817|gb|AAF76190.1|AF271295_1 sensory kinase [Mycobacterium smegmatis] Length = 186 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 5/118 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKV 121 +RA S VP+I ++ S + + G DD V KP RE +ARV A+ RR ++ Sbjct: 67 LRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSAREFIARVRAVLRRGGDDDSEM 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ ++GP+R+ + V G+ LP +LEY M N G+ + Q+ + G Sbjct: 127 SDGVQQSGPVRMDVERHVDSVNGDTITLPLPVFDLLEYGMRNSGRVLTHGQLIDRVSG 184 >gi|1575690|gb|AAB38789.1| response regulator [Synechococcus elongatus PCC 7942] Length = 223 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 6/140 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ +A P++ ++ LQ + D+G DD + KP E+LARV A+ RR + Sbjct: 65 RLRQAQDSTPVLVLTARDGLQDLVQGLDAGADDYLVKPFRLAELLARVRALLRRSPQTQT 124 Query: 125 RAETGPIRVFSDGRDPEVQGEVF---PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +R+ D VQ + + PL RE ++LE LM + G+ +++ Q+ ++ + Sbjct: 125 PLLQVGVRL--DPAQATVQVDDYSPMPLTAREFQLLEALMHHPGQILSRDQLLDQLWPM- 181 Query: 182 DEAVEENVVESHISKLRKKL 201 D NVV + + LR+KL Sbjct: 182 DAEPSSNVVAAQVRLLRRKL 201 >gi|18310907|ref|NP_562841.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18145589|dbj|BAB81631.1| two-component response regulator [Clostridium perfringens str. 13] Length = 265 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 8/187 (4%) Query: 27 EGFNSLEF---EEWLQSSAREDVS-AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82 EGFN LE EE L+ + V AI ++ K + L + R IR S P+I ++ Sbjct: 67 EGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDG-LAVCRNIREVSNTPIILLTAKS 125 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDP 140 + L ++ G DD + KP + +LA+ A+ RR N N + + + + Sbjct: 126 QEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTLNDKNILDFNGLTINKLSHEV 185 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 ++ GE L +E +L YL +N G +++ +I ++G +D + V+++I +LR+K Sbjct: 186 KLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWG-YDYFGDIRTVDTNIKRLREK 244 Query: 201 LRNKLGF 207 L +K + Sbjct: 245 LLDKANY 251 >gi|332971320|gb|EGK10283.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 229 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 9/158 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ R IR S VP++ ++ + L+ G DD V KP RE++ARV AI RR Sbjct: 62 EVCREIRRQSAVPILMLTAKVEERHRLEGLAIGADDYVIKPFSPREVVARVQAILRRSAD 121 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 L + G + V + + G+ L E R+++ L N G+ ++ ++ + Sbjct: 122 DLLAERVSFQHGDLIVDTRTKTVCKAGQPVHLTPIEYRLIQILARNPGRPFSREELVEKL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 +G FD + +E ++ H+ K LRNK+ DP + F Sbjct: 182 FG-FDYSGDERTIDQHV----KNLRNKVEPDPKNPTYF 214 >gi|306485914|gb|ADM92603.1| AdeR [Acinetobacter baumannii] Length = 247 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +Q P+I ++ + G DD V KP + E++ARV A+ RR + +N Sbjct: 78 IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 137 Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 I + +D + E + L E +I+ +++ K + ++ + + Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D E V+SH+SKLRKKL + F + + R +GY +D Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238 >gi|304398496|ref|ZP_07380369.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|308189007|ref|YP_003933138.1| transcriptional regulator [Pantoea vagans C9-1] gi|304354001|gb|EFM18375.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|308059517|gb|ADO11689.1| Probable transcriptional regulator [Pantoea vagans C9-1] Length = 219 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 18/204 (8%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPR------IIRAHSQ---VPLIG 77 +L+ W R+ V A A+ G VL LPR + RA + P++ Sbjct: 18 QALQGAGWSVDWVRDGVYAQNAWSEGGYSCVLLDLGLPRDDGLQVLRRARGRGDATPVLI 77 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSD 136 ++ ++ + DSG DD + KP +E++AR+ AI RR +++ +G +++ Sbjct: 78 LTARDTVAQRIQGLDSGADDYLLKPFDLQEVMARMRAITRRSHGAADSVLGSGDVQLDMM 137 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 R+ +G+ L RE +L L+ G +++ Q+ + IYG DE V N V+ I Sbjct: 138 TREVLYKGQREQLTAREYALLYALLERPGAILSREQLENRIYGWGDE-VSSNAVDVLIHG 196 Query: 197 LRKKLRNKLGFDPVDSKRFLGYSI 220 +R+KL N D + + R LG+ + Sbjct: 197 MRRKLDN----DVIRNVRGLGWRV 216 >gi|288905481|ref|YP_003430703.1| two-component response regulator [Streptococcus gallolyticus UCN34] gi|306831564|ref|ZP_07464722.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|288732207|emb|CBI13772.1| putative two-component response regulator [Streptococcus gallolyticus UCN34] gi|304426349|gb|EFM29463.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 226 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 74/145 (51%), Gaps = 5/145 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + I + +Q +I ++ + + D+G DD + KP +E+LAR+ ++ RR+ Sbjct: 63 VQEIRQTGNQSHIIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRRVDTN 122 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179 ++N G + + G V L +E ++LE+ M N GK+++ QIF+ ++ Sbjct: 123 FTSNILTVGTV-TLNVGEQELVSQNTIRLAGKESKMLEFFMLNAGKKLSTDQIFNHVWAN 181 Query: 180 -LFDEAVEENVVESHISKLRKKLRN 203 D ++ V ++S LR+KL++ Sbjct: 182 DKDDPEIDNGYVFIYVSYLRQKLKS 206 >gi|239982791|ref|ZP_04705315.1| turgor pressure regulator [Streptomyces albus J1074] gi|291454638|ref|ZP_06594028.1| response regulator [Streptomyces albus J1074] gi|291357587|gb|EFE84489.1| response regulator [Streptomyces albus J1074] Length = 231 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 24/164 (14%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R+ S+VP++ +S S + D+G DD V KP E+LAR+ A RR + + Sbjct: 65 RGLRSWSRVPVLVLSARQSSDEKVQALDAGADDYVTKPFGMDELLARLRAAVRRTEPAAP 124 Query: 125 RAETGPI------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 E + RV GRD L E +LE L+ N G+ V++ Q Sbjct: 125 DEEAEVVDAADFTVDLAAKRVHRQGRD-------VRLTPTEWHLLEVLVRNTGRLVSQKQ 177 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + ++G E N + ++++LR+KL DP + F+ Sbjct: 178 LLQEVWG-PSYGTESNYLRVYMAQLRRKLET----DPAHPRHFI 216 >gi|240145280|ref|ZP_04743881.1| DNA-binding response regulator RegX3 [Roseburia intestinalis L1-82] gi|253578070|ref|ZP_04855342.1| DNA-binding response regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251850388|gb|EES78346.1| DNA-binding response regulator [Ruminococcus sp. 5_1_39BFAA] gi|257202635|gb|EEV00920.1| DNA-binding response regulator RegX3 [Roseburia intestinalis L1-82] Length = 233 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 13/175 (7%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G ++ E R + SQ+P+I ++ + + D G DD + KP E+ +R+ A Sbjct: 60 GTGFEICEKVR--KNGSQIPIIFLTASDEEVSIIRGLDCGGDDYITKPFKLGELCSRIRA 117 Query: 115 IYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + RR +S E G I++ G ++G++ L E R++ L+ N + + + Sbjct: 118 LLRRAGLSTQGTGAVMECGDIKIDLLGSRVLLKGKILELTAAEYRLICLLVKNANRIITR 177 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL---GYSIDW 222 I ++ + V+ N + ++ +LR+K+ DP + L G+ W Sbjct: 178 DIILDELWDSTGDYVDNNTLSVYVRRLREKIET----DPSHPEHLLTVRGFGYQW 228 >gi|215483396|ref|YP_002325609.1| response regulator [Acinetobacter baumannii AB307-0294] gi|213988889|gb|ACJ59188.1| response regulator [Acinetobacter baumannii AB307-0294] Length = 247 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +Q P+I ++ + G DD V KP + E++ARV A+ RR + +N Sbjct: 78 IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 137 Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 I + +D + E + L E +I+ +++ K + ++ + + Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D E V+SH+SKLRKKL + F + + R +GY +D Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238 >gi|167760996|ref|ZP_02433123.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704] gi|167661375|gb|EDS05505.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704] Length = 225 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/196 (23%), Positives = 95/196 (48%), Gaps = 18/196 (9%) Query: 41 SAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLD 89 +A + + AF G + +L LP++ IR S++P+I IS S + L Sbjct: 30 AAENGIDGVTAFRKGNPDLILLDIMLPKMDGYTVCEMIRQESEIPVIMISALGSEEDQLK 89 Query: 90 FFDSGVDDVVNKPIHHREILARVAAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGE 145 F+ +DD + KPI ++ ++ A+ RR + + + D +V + Sbjct: 90 GFELQIDDYIPKPISLPIMMKKIEAVIRRYENKGLEKKEELHYKEMTLMVDNYRVKVGKK 149 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 L ++E IL+ L+ N+G+ +++ + ++ ++ EE V++HI LRKKL + Sbjct: 150 DINLTQKEYEILKELLENQGRVISRDSFLNRLWR-YEYVGEERAVDNHIKNLRKKLGDAG 208 Query: 206 GFDPVDSKRFLGYSID 221 + +++ R +GY ++ Sbjct: 209 NY--IETVRGVGYRVE 222 >gi|157146486|ref|YP_001453805.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895] gi|157083691|gb|ABV13369.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895] Length = 235 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 7/147 (4%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IR ++ +P+I IS S + ++G DD + KP +E++AR+ A++RR Sbjct: 61 LEICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G I+ DP + G+ L RE +L + + G+ ++ + Sbjct: 121 QAMGQAQTAGHIQAHGLTLDPLARTVRLHGQDVDLTPREFELLYFFARHPGEVFSRLALL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++G E E+ V +HI++LR K+ Sbjct: 181 EQVWGYQHEGY-EHTVNTHINRLRIKI 206 >gi|169795908|ref|YP_001713701.1| two-component response regulator [Acinetobacter baumannii AYE] gi|213157394|ref|YP_002319439.1| AdeR [Acinetobacter baumannii AB0057] gi|301344928|ref|ZP_07225669.1| AdeR [Acinetobacter baumannii AB056] gi|301509916|ref|ZP_07235153.1| AdeR [Acinetobacter baumannii AB058] gi|301595364|ref|ZP_07240372.1| AdeR [Acinetobacter baumannii AB059] gi|332854443|ref|ZP_08435375.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332868449|ref|ZP_08438162.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] gi|88758852|emb|CAJ77842.1| AdeR [Acinetobacter baumannii AYE] gi|169148835|emb|CAM86704.1| two-component response regulator [Acinetobacter baumannii AYE] gi|193077374|gb|ABO12180.2| AdeR [Acinetobacter baumannii ATCC 17978] gi|213056554|gb|ACJ41456.1| AdeR [Acinetobacter baumannii AB0057] gi|306485917|gb|ADM92605.1| AdeR [Acinetobacter baumannii] gi|332728019|gb|EGJ59411.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332733374|gb|EGJ64560.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] Length = 247 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +Q P+I ++ + G DD V KP + E++ARV A+ RR + +N Sbjct: 78 IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 137 Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 I + +D + E + L E +I+ +++ K + ++ + + Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D E V+SH+SKLRKKL + F + + R +GY +D Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238 >gi|237716432|ref|ZP_04546913.1| two-component system response regulator [Bacteroides sp. D1] gi|262408032|ref|ZP_06084580.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_22] gi|294643327|ref|ZP_06721151.1| putative transcriptional activator protein Irlr [Bacteroides ovatus SD CC 2a] gi|294806113|ref|ZP_06764966.1| putative transcriptional activator protein Irlr [Bacteroides xylanisolvens SD CC 1b] gi|229444079|gb|EEO49870.1| two-component system response regulator [Bacteroides sp. D1] gi|262354840|gb|EEZ03932.1| phosphate regulon transcriptional regulatory protein PhoB [Bacteroides sp. 2_1_22] gi|292641333|gb|EFF59527.1| putative transcriptional activator protein Irlr [Bacteroides ovatus SD CC 2a] gi|294446701|gb|EFG15315.1| putative transcriptional activator protein Irlr [Bacteroides xylanisolvens SD CC 1b] Length = 228 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + IR + +P++ ++ S LD FD+G DD + KP RE+ AR+ + +R Sbjct: 62 ELAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR-- 119 Query: 121 VSNNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V+ N E V++D R D E G L +E +L Y++ N + +++ +I Sbjct: 120 VTGNAQELPQELVYADLRIDLQRKDVERNGISIKLSPKEYNLLLYMVENAERVLSRVEIA 179 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ FD N ++ +I+ LRKK+ + +K +G+ Sbjct: 180 EKVWNTHFDTGT--NFIDVYINYLRKKIDRDFEPKLIHTKAGMGF 222 >gi|229087002|ref|ZP_04219157.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228696312|gb|EEL49142.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 235 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRTASNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++ + +F E QG+ L + E +LE LM + V + ++ A Sbjct: 125 LVAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225 >gi|218248212|ref|YP_002373583.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|218168690|gb|ACK67427.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] Length = 250 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 10/148 (6%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R++R ++ VP++ +S S + + G DD + KP RE++AR A+ RR Sbjct: 85 LDICRLLRYNNNIVPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCRALIRRQ 144 Query: 120 KVSNNRAETGPIRVFSD-GRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +N + P+R F D PE V+GE L +E R+LE M+ + ++ Q+ Sbjct: 145 DFNN--VSSAPVRKFKDISLYPEECRVVVRGEEINLSPKEYRLLELFMSYPRRVWSREQL 202 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G D + V+ HI LR+KL Sbjct: 203 IDQVWGA-DFLGDTKTVDVHIRWLREKL 229 >gi|152986647|ref|YP_001349071.1| KDP operon transcriptional regulatory protein KdpE [Pseudomonas aeruginosa PA7] gi|150961805|gb|ABR83830.1| KDP operon transcriptional regulatory protein KdpE [Pseudomonas aeruginosa PA7] Length = 244 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S+VP+I ++ + D+G +D V KP E++AR+ A R + + + Sbjct: 80 LRQWSRVPVIVLTVRSGEDEKVALLDAGANDYVTKPFSVEELMARIRAFLRTVATGTDDS 139 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G +R+ R+ V GE L R+E +L L+ G+ V + QI ++G Sbjct: 140 PIYDDGILRIDLAQREVAVHGEAVTLSRKEFSLLALLVRQPGRLVTQAQILREMWG---P 196 Query: 184 AVEENVVESHISKLRKKLRNKLGFD 208 EE+ ++ L KLR+KLG D Sbjct: 197 THEEDT--HYLRILVGKLRHKLGDD 219 >gi|325289762|ref|YP_004265943.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324965163|gb|ADY55942.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 227 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 106/228 (46%), Gaps = 21/228 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGKG 57 +LIDD I F + G+ EGF+ + ++ + + + ++ ++ + G Sbjct: 10 LLIDDEP-----NILQFLEMGLLNEGFDVMTAQDGMSAMTIVKQFQPHIAILDVMM--PG 62 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E+ ++++ +I ++ + + G DD + KP E+LAR+ A R Sbjct: 63 MDGFEVCKMLKKTENTAIIMLTAKDEVDDKVKGLTLGADDYMAKPFSFEELLARIHARVR 122 Query: 118 RLKVSNNRAET--GPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N E GP R+ D R E+ V L E +L +++ N+G ++KT+I Sbjct: 123 N-QFPNLLGEVVIGPFRI--DDRRKEIFYHQVVLELSPTEYELLRFMVLNQGLVLSKTKI 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G +D +EN+VE +I LR KL +K + + R GY +D Sbjct: 180 LDKVWG-YDFVGDENIVEVYIRSLRDKLNDK-EHKLIRTLRGSGYRVD 225 >gi|308176281|ref|YP_003915687.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743744|emb|CBT74716.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 246 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 84/166 (50%), Gaps = 9/166 (5%) Query: 41 SAREDVSAIEAFLIG-KGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDV 98 S DV ++ L G G +VL R +R H ++P++ ++ +++ ++ +G DD Sbjct: 63 SLAPDVLVLDWMLPGFDGPEVL---RKVRTHFPEIPVLFLTAKDAVEDRIEGLGAGADDY 119 Query: 99 VNKPIHHREILARVAAIYRRLKVSN-NRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERR 155 V KP E+L R+ + R + + AE G + + +D D G L E Sbjct: 120 VAKPFSLEEVLIRLHRLVERSGAATADSAELVVGDLVLNTDSHDVSRAGREISLTATEFD 179 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +L YLM N + V+K+QI ++ +D + N+VE +IS LRKK+ Sbjct: 180 LLSYLMNNARRVVSKSQILDNVWH-YDFDGQANIVELYISYLRKKI 224 >gi|294635401|ref|ZP_06713893.1| DNA-binding response regulator BaeS [Edwardsiella tarda ATCC 23685] gi|291091224|gb|EFE23785.1| DNA-binding response regulator BaeS [Edwardsiella tarda ATCC 23685] Length = 243 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 1/149 (0%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S+VP++ ++ L + G DD + KP RE++ARV Sbjct: 67 LMLPGVDGLTLCREIRRSSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 126 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 I RR + P+ + + + L + E R+L+ L G +++ Q Sbjct: 127 KTILRRCGLQEGGEVRTPLLIDERHFQARYRQQTLDLTQAEFRLLKTLATQPGCVLSREQ 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + + +Y + V + V+SHI LR+KL Sbjct: 187 LLNHLYDDY-RVVTDRTVDSHIKNLRRKL 214 >gi|255526521|ref|ZP_05393430.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187630|ref|ZP_06856024.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509771|gb|EET86102.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047587|gb|EFG87027.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 230 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 5/145 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR S P+I I+ + +SG DD + KP E++AR+ AI RR+ Sbjct: 62 MEVCKSIRFKSNTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAILRRIT 121 Query: 121 VSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N T P+ + + ++ G L ++E +L L ++ K V++ + + Sbjct: 122 PPENIKLTTIKYPPLELDIENYSIKLNGSNINLTKKEIEVLWMLSSSPNKIVSRDTLLDS 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 I+G+ D + V++HI ++R KL Sbjct: 182 IWGI-DYFGDPRTVDTHIKRIRAKL 205 >gi|223986859|ref|ZP_03636837.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM 12042] gi|223961164|gb|EEF65698.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM 12042] Length = 228 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 29/182 (15%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G ++ + R ++P+I ++ + D G DD + KP RE+++R+ + Sbjct: 58 GSGYEICKRMREDSRLKEIPVIFLTACDDEVNIVMGLDLGADDYITKPFRVRELISRMNS 117 Query: 115 IYRRLKVSNNRAETG-----------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163 + RR +AET RVF + + EVF L E R+L L + Sbjct: 118 VLRR--AGKKQAETTINYQDLSINTIAARVFKNNQ------EVF-LTGMEYRLLLILATH 168 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 R + + + Q+F AI+ L E V +N + +I +LR+KL + DP + + R LGY Sbjct: 169 RNQVMTRDQLFEAIWDLGGEYVNDNTLTVYIKRLREKLED----DPAHPQLIRTIRGLGY 224 Query: 219 SI 220 + Sbjct: 225 KL 226 >gi|329769264|ref|ZP_08260681.1| hypothetical protein HMPREF0433_00445 [Gemella sanguinis M325] gi|328839258|gb|EGF88841.1| hypothetical protein HMPREF0433_00445 [Gemella sanguinis M325] Length = 222 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I IS + + G DD + KP + A++ A+ RR+ N+ Sbjct: 67 IRKISKVPIIFISSASDDMNIVMAMNIGADDFIEKPFKLVVLKAKIEALLRRVYNFNSSN 126 Query: 127 ETGPIR--VFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + +F +D + + V L + E +IL L+ NR K V++ I +A++ D Sbjct: 127 SLIVYKEVIFDINKDEIKYKDNVATLTKNESKILTILLENREKIVSREDIIAALWQ-SDN 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++EN + ++++LR KL++ D + +K+ GY + Sbjct: 186 FIDENTLSVNVNRLRSKLKDIGIADFIITKKGKGYMV 222 >gi|323143646|ref|ZP_08078320.1| putative response regulator ArlR [Succinatimonas hippei YIT 12066] gi|322416579|gb|EFY07239.1| putative response regulator ArlR [Succinatimonas hippei YIT 12066] Length = 225 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 4/149 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G +L R R H+ +I +S SL + + G DD + KP H E+ R+ A Sbjct: 57 GNGLDILRDIR--RRHNPAGVIIVSAKDSLDDKVKGLEIGADDYLPKPFHLAELSMRIYA 114 Query: 115 IYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 I RR SNN + I + G+ ++ + L R E +L + ++N+ + V+K I Sbjct: 115 IIRRKAFASNNTLYSNNIEIDLLGKTVKINDQSILLTRTEYELLLFFISNKNRVVSKASI 174 Query: 174 FSAIYGLFDEAVE-ENVVESHISKLRKKL 201 I G + ++ + + SHI L+ KL Sbjct: 175 AEHISGEMSDLLDNHDFIYSHIKNLKAKL 203 >gi|293190389|ref|ZP_06608821.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus F0309] gi|292820973|gb|EFF79928.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus F0309] Length = 240 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 5/158 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ A P++ ++ ++ + G DD V KP E++AR+ AI RR S Sbjct: 78 RLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMGSEE 137 Query: 125 R---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + D + G L E ++L YL+ N G+ V+K QI ++ + Sbjct: 138 DDAFLRVGDLVIDEDAHEVTRAGVPIDLSPTEFKLLRYLVINAGRVVSKMQILDHVWE-Y 196 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 D E +VES+IS LR+KL + + +KR +GY Sbjct: 197 DWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGY 234 >gi|291561767|emb|CBL40567.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 231 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/209 (25%), Positives = 94/209 (44%), Gaps = 12/209 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V DD+ +V+ I L G+ ++ ++ E E L+ + +V+ + ++ G Sbjct: 4 ILVCDDDKQIVEAINIYLTGEGFNVIKAYDGYEALELLE---KNEVNLMIVDVMMPGLDG 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +R S +P+I +S + + G DD + KP + E++ARV + RR Sbjct: 61 IRTTLKVRETSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYT 120 Query: 121 VSNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N + G +V+ G ++ V GE L E IL L+ N GK + Q Sbjct: 121 QLGNLNQQGSSQVYKCGGLMINDENKEVTVDGEPIKLTPIEYNILLLLVKNAGKVFSIDQ 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I+ I+ D +N V HI +R+K+ Sbjct: 181 IYEKIWN-EDAIGADNTVAVHIRHIREKI 208 >gi|317048976|ref|YP_004116624.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|316950593|gb|ADU70068.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 223 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 17/168 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ R QVP++ ++ +L + ++G DD + KP E+ AR+ A+ RR Sbjct: 63 LARLRRRGQQVPVLLLTARSALAQRVQGLNAGADDYLTKPFELDELEARLRALLRRGHGQ 122 Query: 123 NNRAET-GPIRVFSDG-----RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +++ G + + + G R P L RE +L LM G V++ ++ Sbjct: 123 MPQSQVIGQLELDNQGCFLLNRKP------LRLTPREASVLTTLMRRPGHPVSRQHLYEQ 176 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223 + L DEA +E +E ++ ++RKKL G D + + R LGYS++ Sbjct: 177 TFTLCDEASQET-IELYVHRVRKKLA---GSDVAIVTLRGLGYSLECQ 220 >gi|258655134|ref|YP_003204290.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558359|gb|ACV81301.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 225 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 10/160 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R + VP+I +S + D+G DD V KP E+ AR+ A+ RR Sbjct: 61 VEVIRRLRVWTAVPIIVLSGRVGSSDKVLALDAGADDYVTKPFSLDELFARIRAVTRRST 120 Query: 121 VSNNRAE--TGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ AE G R+ +D +GE L R E ++LE L+ + GK + + + + Sbjct: 121 GADASAEVVVGRFRIDLADRTIAADEGEPPHLTRTEWQLLEILLTHPGKLITQRSLLQQV 180 Query: 178 YGLFDEAVEENVVESH-ISKLRKKLRNKLGFDPVDSKRFL 216 +G A E+ E+H I + LR KL DP + L Sbjct: 181 WG---PAYEQ---ETHYIRQYMAHLRRKLEADPARPRHLL 214 >gi|170023656|ref|YP_001720161.1| two component transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|169750190|gb|ACA67708.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] Length = 235 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 29/225 (12%) Query: 1 MFVLI-DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLI 54 M +LI +D A +++G + + EG+ + E +Q+ A + D ++ + Sbjct: 1 MKILIAEDNAHIRNGLMEVLAH-----EGYRPIAAENGVQALALYRQQQPDFIILDIMMP 55 Query: 55 G-KGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 G KV R IR H Q P+I +S + + G DD ++KP E+ AR+ Sbjct: 56 ELDGYKVC---REIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARI 112 Query: 113 AAIYRRL--KVSNNRAETG----PIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRG 165 I RR KV + + G + VF + ++GE L RE IL YL ++G Sbjct: 113 KTIVRRCLRKVPESAEDAGFPFGDLMVFPN-ELCAIRGETRLELSLREVNILRYLYQHKG 171 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 + + + +F A++G +D + ++ HISKLRK + DPV Sbjct: 172 RVITRDMLFDAVWG-YDHLPQSRTLDQHISKLRKTIE----LDPV 211 >gi|157693311|ref|YP_001487773.1| response regulator PhoP [Bacillus pumilus SAFR-032] gi|157682069|gb|ABV63213.1| response regulator PhoP [Bacillus pumilus SAFR-032] Length = 242 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 15/145 (10%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-------------NRAETGPIRVFSDG 137 + G DD + KP RE+ ARV AI RR + S ++ + G +R+ + Sbjct: 93 LELGADDYMTKPFSPREVGARVKAILRRAQQSQPAPTQEEKEEIIADQIKIGELRILPEH 152 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 + Q E L +E +L YL ++G+ + + + SA++ +D A + +V+ HIS L Sbjct: 153 YEVYFQEERLELTPKEFELLLYLAKHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHL 211 Query: 198 RKKL-RNKLGFDPVDSKRFLGYSID 221 R K+ +N + + R LGY ++ Sbjct: 212 RDKIEKNTKKPTYIKTIRGLGYKLE 236 >gi|159901175|ref|YP_001547422.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894214|gb|ABX07294.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 232 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 8/150 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +++ + P+I ++ + G DD V KP RE++ARV A+ RR++ Sbjct: 61 LEVCRRLQSDRRTPVIMLTAKSEENDRIIGLGVGADDYVVKPFSPRELVARVEAVLRRVQ 120 Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E G +RV RD +V G+ L RE +L +L +R + + Q+ Sbjct: 121 PQPDAPPPDERPIELGALRVDPRTRDVQVAGKSISLTAREFDLLYFLARHRERVFTRDQL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++G + + + + V HI +LR+K+ + Sbjct: 181 MELVWG-YTFSADTSTVTVHIRRLREKIED 209 >gi|90418941|ref|ZP_01226852.1| two-component phosphate transcriptional regulator, PhoB [Aurantimonas manganoxydans SI85-9A1] gi|90337021|gb|EAS50726.1| two-component phosphate transcriptional regulator, PhoB [Aurantimonas manganoxydans SI85-9A1] Length = 247 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 6/166 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P++ ++ + G DD V KP E++ARV A+ R Sbjct: 62 VELCRRLRQREETERLPILMLTARGEESERVRGLSVGADDYVVKPFSTPELIARVRAMLR 121 Query: 118 RLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R K ++ G I + + G L E +++E+ M + G+ ++ Q+ Sbjct: 122 RSKPEKISSQLVAGDIDLDRETHRVRRAGRELKLGPTEFKLMEFFMQSPGRVFSREQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK + DP+ + R GY++D Sbjct: 182 GVWG-RDIYVDERTVDVHVGRLRKAINRGRERDPIRTVRGAGYALD 226 >gi|77460418|ref|YP_349925.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384421|gb|ABA75934.1| putative two-component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 242 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 16/165 (9%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE L L R +RA S +P++ ++ + + G DD + KP RE++AR+ Sbjct: 64 LMLPGEDGLSLCRWLRAESDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165 I RR V ++R+E F + R V G V PL E R+L ++ R Sbjct: 124 QTILRR--VRDDRSEQRANIRFDNWRLNSVLRQLIADDGLVVPLSNAEFRLL-WVFIERP 180 Query: 166 KRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +RV ++ Q+ A G EA + + I L +LR KLG DP Sbjct: 181 RRVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 220 >gi|299069814|emb|CBJ41094.1| DNA-binding response regulator in two-component system [Ralstonia solanacearum CMR15] Length = 226 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/229 (25%), Positives = 107/229 (46%), Gaps = 17/229 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGE 58 ++I+D A V D F G+ EG+ L E LQ + + + + L+ G Sbjct: 3 ILVIEDDARVSD-----FLSRGLRAEGYRVLLARTGPEGLQLARGGEPALLLLDLMLPGM 57 Query: 59 KVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LEL + +RA + VP++ ++ + + G DD + KP E+LAR+ A+ R Sbjct: 58 SGLELCQTLRAERNHVPILMLTSLTDIDDRVTGLRLGADDYMTKPFAFEELLARIEALLR 117 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R + R + ++V D E G+ L +E LE LM+ G+ ++ + Sbjct: 118 RGR--EQRPKVNVLQVADLVLDRERMQVTRAGKPIALTAKELAFLELLMSAPGRIYSRER 175 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I S ++G ++ + N+V+ ++ +LR K+ + + R LGY +D Sbjct: 176 ILSNVWGANEDPL-TNIVDVYVRRLRSKIDEGQPVPLLKTVRGLGYRLD 223 >gi|269791708|ref|YP_003316612.1| two component transcriptional regulator, winged helix family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099343|gb|ACZ18330.1| two component transcriptional regulator, winged helix family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 228 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 15/168 (8%) Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R IR + VP+I ++ + + ++G DD V KP E++ARV A RR Sbjct: 63 EVCRRIREEQELRHVPVIMLTARRDERDAVAGLEAGADDYVRKPFSIPELMARVRAHLRR 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQ 172 ++ + G +++ E QG+V L E R+LE LM+ RG+ V+K + Sbjct: 123 ----SDSPQGGEVQISMGNLTLEPQGDVLVDGRPLDLSPTEHRLLEVLMSGRGRLVSKEE 178 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I I+G + V+ ++ +LR+KL + + R GY + Sbjct: 179 ILGKIWGHV--GSDSRTVDVNVFRLRRKLEEAGARVTIKTVRGRGYRV 224 >gi|256394226|ref|YP_003115790.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256360452|gb|ACU73949.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 242 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 2/138 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123 R+ R VP++ +S + + +G DD V KP E+ RV A+ RR + V + Sbjct: 72 RLRRQGDDVPVLMLSALDDVADRIAGLAAGADDYVVKPFSTAELELRVRALLRRGRPVPH 131 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 I + +D R G L RRE +LE L+ N G + + Q+ ++G +D Sbjct: 132 GVVAACGIVMDTDARTVTAAGCPLELTRREFDVLEVLVRNAGAVLTRDQLLDRVWG-YDF 190 Query: 184 AVEENVVESHISKLRKKL 201 V + V++ +S LR+KL Sbjct: 191 QVRSDAVDTVVSYLRRKL 208 >gi|229153277|ref|ZP_04281455.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228629881|gb|EEK86532.1| DNA-binding response regulator [Bacillus cereus m1550] Length = 225 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 7/146 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++D S + + +G DD + KP E++ARV AI RR Sbjct: 62 EICRQIRLVKTTPIIIVTDNVSSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 120 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + E + +F D V+ GE L +RE +L +L+ N+ +++ + + Sbjct: 121 CNQQKEINFFQFKDLFVDASSNVVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR 202 ++G ++ V NVV+ +I +RKKL+ Sbjct: 181 VWG-YNVVVNPNVVDLYIGYVRKKLK 205 >gi|257784846|ref|YP_003180063.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] gi|257473353|gb|ACV51472.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] Length = 234 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 13/172 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR P I ++ S+ + D+G DD + KP E+LAR+ + + Sbjct: 61 LEVLRRIRREKNTPTIMLTARDSVMDKVAGLDAGADDYLTKPFAIEELLARIRVALKHHE 120 Query: 121 VSNNRAE---TGPIR-VFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 V + ++ P + VF+ D R+ V L +E +L LM + G + Sbjct: 121 VDSTSSQIPSNVPTKNVFTIKGVSLDVDRREVCVNNNSIELTTKEFEVLRMLMEHAGVVL 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +I S G ++ A E N V+ HI+ LR K+ ++ + + R +GY I Sbjct: 181 SRERIASEALG-YEFAGETNNVDVHIAHLRAKIDDQYNIKLITTVRGVGYVI 231 >gi|227514133|ref|ZP_03944182.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931] gi|227087504|gb|EEI22816.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931] Length = 245 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 88/202 (43%), Gaps = 20/202 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY + DG EE LQ E I L+ LE+ + +RA Sbjct: 32 LEKEGYEVVVAYDG-----------EEALQKVESESPDLIVLDLMLPKIDGLEVAKQVRA 80 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--- 126 P+I ++ S + + G DD V KP +RE++ARV A RR + + A Sbjct: 81 KRSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDATVSPANDD 140 Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + + D +GE L RE +L YL + G+ + + + ++G + Sbjct: 141 RTADIKVGDLTIHPDAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHLLQTVWG-Y 199 Query: 182 DEAVEENVVESHISKLRKKLRN 203 D + V+ + +LR+K+ + Sbjct: 200 DYFGDVRTVDVTVRRLREKIED 221 >gi|218963158|gb|ACL13308.1| AdeR [Acinetobacter baumannii] Length = 247 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +Q P+I ++ + G DD V KP + E++ARV A+ RR + +N Sbjct: 78 IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 137 Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 I + +D + E + L E +I+ +++ K + ++ + + Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D E V+SH+SKLRKKL + F + + R +GY +D Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238 >gi|217958237|ref|YP_002336783.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229137451|ref|ZP_04266062.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|217067440|gb|ACJ81690.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228646009|gb|EEL02232.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 225 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N R + + D V E L E +L + + + + Q+ I+G Sbjct: 119 TNQRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDDHLKTVYGVGYRW 220 >gi|212640658|ref|YP_002317178.1| OmpR family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212562138|gb|ACJ35193.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Anoxybacillus flavithermus WK1] Length = 236 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 20/219 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY DGV E +E + D+ ++ L K +E+ R IR Sbjct: 24 LRKEGYDVHCAYDGV--EALQKVE-------DIQPDLILLDIMLPQKDG--MEVCREIRK 72 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR---- 125 +P+I ++ S + + G DD V KP RE+LARV A RR + + Sbjct: 73 KYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQRQEQDVKE 132 Query: 126 ---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + GP+ + D +GE L RE +L YL + G+ + + + ++G +D Sbjct: 133 MSEIKIGPLTIHPDAYTVSKRGEHIELTHREFELLHYLAKHIGQVMTREHLLQTVWG-YD 191 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + V+ + +LR+K+ + + ++R +GY + Sbjct: 192 YFGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYL 230 >gi|194017268|ref|ZP_03055880.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|194011136|gb|EDW20706.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 242 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 71/142 (50%), Gaps = 15/142 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSN-------------NRAETGPIRVFSDGRDP 140 G DD + KP RE+ ARV AI RR + S ++ + G +R+ + + Sbjct: 96 GADDYMTKPFSPREVGARVKAILRRAQQSQPTPTQEEKDEIIADQIKIGELRILPEHYEV 155 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 Q E L +E +L YL ++G+ + + + SA++ +D A + +V+ HIS LR K Sbjct: 156 YFQEERLELTPKEFELLLYLAKHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDK 214 Query: 201 L-RNKLGFDPVDSKRFLGYSID 221 + +N + + R LGY ++ Sbjct: 215 IEKNTKKPTYIKTIRGLGYKLE 236 >gi|162295952|gb|ABX83923.1| AdeR [Acinetobacter baumannii] Length = 247 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +Q P+I ++ + G DD V KP + E++ARV A+ RR + +N Sbjct: 78 IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 137 Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 I + +D + E + L E +I+ +++ K + ++ + + Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D E V+SH+SKLRKKL + F + + R +GY +D Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLVNVRGVGYRLD 238 >gi|158422753|ref|YP_001524045.1| response regulator receiver [Azorhizobium caulinodans ORS 571] gi|158329642|dbj|BAF87127.1| response regulator receiver [Azorhizobium caulinodans ORS 571] Length = 223 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 10/164 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VLE R RA ++P++ ++ + FD+G DD V KP H E+LAR+ A+ Sbjct: 59 GISVLEHWR--RAGRRMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARLRALL 116 Query: 117 RRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR +++ GP+R+ + V G L E R+L YLM + G+ V++ ++ Sbjct: 117 RRASGHASSELTCGPVRLDTRSGRVSVGGSPVKLTSHEYRLLSYLMHHAGRVVSRAELVE 176 Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y FD + N +E + +LRK K+ D + + R LGY Sbjct: 177 HLYEQDFDR--DSNTIEVFVGRLRK----KIDCDVIQTVRGLGY 214 >gi|157371792|ref|YP_001479781.1| DNA-binding transcriptional regulator BaeR [Serratia proteamaculans 568] gi|157323556|gb|ABV42653.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] Length = 239 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 11/174 (6%) Query: 37 WLQSSAREDVSAIEAF--------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88 WL ++ E V A+ A L+ G L + R +R + +P++ ++ L Sbjct: 37 WL-TNGSEVVPAVHAHSPALILLDLMLPGSDGLTVCRELRRFTDIPVVMVTAKIEEIDRL 95 Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVF 147 + G DD + KP RE++ARV I RR + +N E + + QG++ Sbjct: 96 LGLEIGADDYICKPYSPREVVARVKTILRRCYRPLDNTQEETQLHIDEPRFQASYQGQML 155 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L E R+L+ L + G ++ Q+ + +Y + V + ++SHI LR+KL Sbjct: 156 DLTPAEFRLLKTLASQPGNVFSREQLLNNLYDDY-RVVTDRTIDSHIKNLRRKL 208 >gi|120597082|ref|YP_961656.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|146291504|ref|YP_001181928.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|120557175|gb|ABM23102.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] gi|145563194|gb|ABP74129.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] Length = 225 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/223 (23%), Positives = 107/223 (47%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D A D + F + G ++E N L +S + D+ ++ L G K+ Sbjct: 3 ILLVEDDATTIDYIVKGFLEQGHNIETANDGHQGLSLATSCQYDLVILDRMLPQLDGLKL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R +Q P++ +S + + +G DD + KP E+L R + +R + Sbjct: 63 LAALRA--TGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQ 120 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G +++ R+ + G+ L +E ++L+YLM + + +++T +F A++ Sbjct: 121 STPISTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 180 Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD NV++ HI+KLR+K + +++ R GY + Sbjct: 181 DYHFDP--RTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221 >gi|26251291|ref|NP_757331.1| DNA-binding response regulator CreB [Escherichia coli CFT073] gi|91214116|ref|YP_544102.1| DNA-binding response regulator CreB [Escherichia coli UTI89] gi|110644837|ref|YP_672567.1| DNA-binding response regulator CreB [Escherichia coli 536] gi|117626758|ref|YP_860081.1| DNA-binding response regulator CreB [Escherichia coli APEC O1] gi|191173173|ref|ZP_03034705.1| transcriptional regulatory protein CreB [Escherichia coli F11] gi|215489711|ref|YP_002332142.1| DNA-binding response regulator CreB [Escherichia coli O127:H6 str. E2348/69] gi|218561631|ref|YP_002394544.1| DNA-binding response regulator CreB [Escherichia coli S88] gi|218692788|ref|YP_002401000.1| DNA-binding response regulator CreB [Escherichia coli ED1a] gi|227885110|ref|ZP_04002915.1| DNA-binding response regulator [Escherichia coli 83972] gi|237704134|ref|ZP_04534615.1| transcriptional regulatory protein CreB [Escherichia sp. 3_2_53FAA] gi|300939389|ref|ZP_07154056.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300980841|ref|ZP_07175222.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|300983983|ref|ZP_07176834.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|301048371|ref|ZP_07195400.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|306815404|ref|ZP_07449553.1| DNA-binding response regulator CreB [Escherichia coli NC101] gi|312966116|ref|ZP_07780342.1| transcriptional regulatory protein creB [Escherichia coli 2362-75] gi|331661033|ref|ZP_08361965.1| transcriptional regulatory protein CreB [Escherichia coli TA206] gi|26111724|gb|AAN83905.1|AE016772_83 Transcriptional Regulatory protein creB [Escherichia coli CFT073] gi|91075690|gb|ABE10571.1| transcriptional regulatory protein CreB [Escherichia coli UTI89] gi|110346429|gb|ABG72666.1| transcriptional regulatory protein CreB [Escherichia coli 536] gi|115515882|gb|ABJ03957.1| catabolic regulation response regulator CreB [Escherichia coli APEC O1] gi|190906558|gb|EDV66165.1| transcriptional regulatory protein CreB [Escherichia coli F11] gi|215267783|emb|CAS12246.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli O127:H6 str. E2348/69] gi|218368400|emb|CAR06220.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli S88] gi|218430352|emb|CAR11222.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli ED1a] gi|222036141|emb|CAP78886.1| Transcriptional regulatory protein creB [Escherichia coli LF82] gi|226902046|gb|EEH88305.1| transcriptional regulatory protein CreB [Escherichia sp. 3_2_53FAA] gi|227837939|gb|EEJ48405.1| DNA-binding response regulator [Escherichia coli 83972] gi|294493345|gb|ADE92101.1| transcriptional regulatory protein CreB [Escherichia coli IHE3034] gi|300299788|gb|EFJ56173.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|300306817|gb|EFJ61337.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300409158|gb|EFJ92696.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|300455735|gb|EFK19228.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|305851066|gb|EFM51521.1| DNA-binding response regulator CreB [Escherichia coli NC101] gi|307556633|gb|ADN49408.1| transcriptional regulatory protein CreB [Escherichia coli ABU 83972] gi|307629570|gb|ADN73874.1| DNA-binding response regulator CreB [Escherichia coli UM146] gi|312289359|gb|EFR17253.1| transcriptional regulatory protein creB [Escherichia coli 2362-75] gi|312949030|gb|ADR29857.1| DNA-binding response regulator CreB [Escherichia coli O83:H1 str. NRG 857C] gi|315284971|gb|EFU44416.1| response regulator receiver domain protein [Escherichia coli MS 110-3] gi|315298370|gb|EFU57625.1| response regulator receiver domain protein [Escherichia coli MS 16-3] gi|320195353|gb|EFW69981.1| Two-component response regulator CreB [Escherichia coli WV_060327] gi|323190322|gb|EFZ75598.1| transcriptional regulatory protein creB [Escherichia coli RN587/1] gi|323950513|gb|EGB46391.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323955193|gb|EGB50966.1| response regulator receiver domain-containing protein [Escherichia coli H263] gi|324007720|gb|EGB76939.1| response regulator receiver domain protein [Escherichia coli MS 57-2] gi|324012409|gb|EGB81628.1| response regulator receiver domain protein [Escherichia coli MS 60-1] gi|331052075|gb|EGI24114.1| transcriptional regulatory protein CreB [Escherichia coli TA206] Length = 229 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 16/226 (7%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGE-KV 60 L++D + D + + EGF+ FE L AR+ V + +G + Sbjct: 8 LVEDEQGIADTLVYMLQQ-----EGFDVEVFERGLPVLDKARQQVPDVMILDVGLPDISG 62 Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 EL R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+ Sbjct: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFS 175 K + + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ Sbjct: 123 KKFSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +++ + + V++HI LR KLR P+++ R +GYS+ Sbjct: 182 SVWEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|328949557|ref|YP_004366892.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328449881|gb|AEB10782.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 222 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 94/199 (47%), Gaps = 14/199 (7%) Query: 25 SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84 + +G +LE W + R D+ ++ L+ G LE+ R +R S VP+I ++ Sbjct: 33 ATDGRRALEL--W--RATRPDLILLD--LMVPGPDGLEITRTLRKTSDVPIIMVTARAEE 86 Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPIRVFSDGRDPE 141 L + G DD V KP RE++ARV A+ RR K + R G + V + + Sbjct: 87 TDRLVGLELGADDYVTKPFSPREVVARVKAVLRRAKGRVRAPERYTVGRLEVDLEAFEAR 146 Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 G+ PL + R+L L G+ V + ++ + L D + V++H+ LR++L Sbjct: 147 CAGQPLPLSPAQLRLLAALAREAGRAVPRAELLAQ---LGDGDADARTVDAHVKNLRRRL 203 Query: 202 RNKLGFDPVDSKRFLGYSI 220 G +++ R +GY + Sbjct: 204 -GPCGAQ-IETVRGVGYRL 220 >gi|319424670|gb|ADV52744.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 239 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/223 (23%), Positives = 107/223 (47%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D A D + F + G ++E N L +S + D+ ++ L G K+ Sbjct: 17 ILLVEDDATTIDYIVKGFLEQGHNIETANDGHQGLSLATSCQYDLVILDRMLPQLDGLKL 76 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R +Q P++ +S + + +G DD + KP E+L R + +R + Sbjct: 77 LAALRA--TGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQ 134 Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G +++ R+ + G+ L +E ++L+YLM + + +++T +F A++ Sbjct: 135 STPISTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 194 Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD NV++ HI+KLR+K + +++ R GY + Sbjct: 195 DYHFDP--RTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 235 >gi|313673530|ref|YP_004051641.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] gi|312940286|gb|ADR19478.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] Length = 222 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 2/150 (1%) Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 KG ++L+L + S +P+I IS S ++ + G DD + KP + ++A++ + Sbjct: 59 KGTQLLQLLKRSPKFSNIPVIIISARSSESDIVEGLELGADDYITKPFSMKVLIAKIKIL 118 Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R+ + + N E I V + + + L +E +L + + + K +++Q+ Sbjct: 119 LRKKQEKTENIIEYKGIIVDLEKYKVFLNNKEITLTYKEFELLVFFLKHPKKVFSRSQLL 178 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK 204 S I+G +D + V+SH+S LRKKL +K Sbjct: 179 SNIWG-YDADIFTRTVDSHVSSLRKKLEDK 207 >gi|308175221|ref|YP_003921926.1| hypothetical protein BAMF_3330 [Bacillus amyloliquefaciens DSM 7] gi|307608085|emb|CBI44456.1| Uncharacterized transcriptional regulatory protein RBAM_032050 [Bacillus amyloliquefaciens DSM 7] gi|328555193|gb|AEB25685.1| hypothetical protein BAMTA208_17665 [Bacillus amyloliquefaciens TA208] Length = 225 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 3/160 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ +R+ + +P++ ++ + F SG DD + KP E+ ARV A+ +R + Sbjct: 61 FEVSEAVRSFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYR 120 Query: 121 VSNNRAET-GPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + T G + + R G LPRRE +L L K ++ + I+ Sbjct: 121 ITAEKLLTIGTVTLDKQSRTVTRGGGSGMTLPRREFELLFKLAGYPNKTFSREHLIEDIW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G FD +E V+ HI +LR++ K + + R LGY Sbjct: 181 G-FDYEGDERTVDVHIKRLRERFPEKDYPFAIHTVRGLGY 219 >gi|261821426|ref|YP_003259532.1| PhoP family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261605439|gb|ACX87925.1| two component transcriptional regulator, winged helix family [Pectobacterium wasabiae WPP163] Length = 229 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 2/153 (1%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128 +++P++ ++ Q + ++G DD V KP H E++AR+ A+ RR +++ Sbjct: 70 QAKLPILVLTAREGWQDKVAVLEAGADDYVTKPFHMEEVVARLQALMRRNSGLASQIISL 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 P V R+ + L E I+E L+ N GK V+K + +Y E E + Sbjct: 130 PPFEVDLSRRELVIHSTPIKLTAFEYTIIETLIRNTGKVVSKDSLMLQLYP-DAELRESH 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + +LRKK++ D + + R GY D Sbjct: 189 TIDVLMGRLRKKIQQADAPDVITTVRGQGYRFD 221 >gi|229020065|ref|ZP_04176847.1| Two-component response regulator [Bacillus cereus AH1273] gi|229026294|ref|ZP_04182653.1| Two-component response regulator [Bacillus cereus AH1272] gi|228735010|gb|EEL85646.1| Two-component response regulator [Bacillus cereus AH1272] gi|228741222|gb|EEL91438.1| Two-component response regulator [Bacillus cereus AH1273] Length = 229 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 8/150 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S VP+I ++ TL F+ G DD V KP +LAR + K +N Sbjct: 66 RRIRKTSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRKTTNK 125 Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E I V R V L E IL Y M N+G + + Q+ S I Sbjct: 126 PLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLISRI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207 +G ++ A ++ V SHI LR KL K + Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|187934010|ref|YP_001886396.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187722163|gb|ACD23384.1| putative lantibiotic biosynthesis regulatory protein [Clostridium botulinum B str. Eklund 17B] Length = 220 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 3/157 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L IR+ P++ ++ + + G DD + KP E+ ARV A RR + Sbjct: 62 LCNKIRSLVDCPILFLTAKTMEEDIVKGLSFGGDDYITKPFGISELRARVNAHLRRERRE 121 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 A ++ + + ++ E+ + E I EYL N G+ +K QI+ +++G F Sbjct: 122 KQNAFYISELKFYINSKEVYHDEELISFTKSEYNICEYLALNHGQVFSKEQIYESVFG-F 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D + + HI +R KL+ + G + +++ +GY Sbjct: 181 DGHSDTTAIVEHIKNIRSKLKVR-GINTIETVWGIGY 216 >gi|162147307|ref|YP_001601768.1| two component response regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785884|emb|CAP55455.1| putative two component response regulator [Gluconacetobacter diazotrophicus PAl 5] Length = 232 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 6/131 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 G DD + KP E+LAR+ A+ RR + + +NR G + + R G L Sbjct: 101 LSDGADDYIVKPYDFDELLARLDAVSRRYVALVDNRLALGEVEIDLSRRRLSRLGAEVDL 160 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 RE ++E L G ++ QI A+YGL +E +E N +E IS++RK K+G Sbjct: 161 TAREWAVIELLARRAGAICSREQIEDALYGLGEE-IESNAIEVFISRVRK----KVGAGL 215 Query: 210 VDSKRFLGYSI 220 + + R GY + Sbjct: 216 IRTVRGRGYRL 226 >gi|154507916|ref|ZP_02043558.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC 17982] gi|153797550|gb|EDN79970.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC 17982] Length = 240 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 5/158 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ A P++ ++ ++ + G DD V KP E++AR+ AI RR S Sbjct: 78 RLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMGSEE 137 Query: 125 R---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + D + G L E ++L YL+ N G+ V+K QI ++ + Sbjct: 138 DDAFLRVGDLVIDEDAHEVTRAGVPIDLSPTEFKLLRYLVINAGRVVSKMQILDHVWE-Y 196 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 D E +VES+IS LR+KL + + +KR +GY Sbjct: 197 DWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGY 234 >gi|26992059|ref|NP_747484.1| two component heavy metal response transcriptional regulator [Pseudomonas putida KT2440] gi|24987198|gb|AAN70948.1|AE016739_1 transcriptional activator CopR [Pseudomonas putida KT2440] Length = 225 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 E+ R++RA + VP++ ++ + + + G DD + KP E+LARV + RR Sbjct: 61 EVLRMVRAAGKDVPVLFLTARDGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGT 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + V R G+ L +E +LE LM RG+ + K+ I S ++ Sbjct: 121 STAAQTTMKMADLEVDLLKRRATRSGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVW 180 Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + FD + NV+E I +LR K+ + + + R +GY +D Sbjct: 181 DMNFDS--DTNVIEVAIRRLRAKIDDDFAPKLIHTARGMGYMMD 222 >gi|291514656|emb|CBK63866.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Alistipes shahii WAL 8301] Length = 223 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 9/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV---QGEVF 147 FD G DD + KPI + +++RV AI +R+ ++ E P + R+ G+ Sbjct: 95 FDVGADDYLTKPIKMKLLVSRVQAILKRID-ADRPPEKAPAPGLTVDRERYTVIRDGQEI 153 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 LPR+E +L+ L ++ GK + + +I++ I+G + V + ++ HI +KLR K+G Sbjct: 154 TLPRKEFALLDLLHSSPGKLIPREEIYAKIWGT-EVVVGDRTIDVHI----RKLRQKIGD 208 Query: 208 DPVDSKRFLGYS 219 + + + + +GY Sbjct: 209 ERIVTVKGVGYK 220 >gi|311740874|ref|ZP_07714701.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304394|gb|EFQ80470.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 232 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 12/168 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R+ P++ ++ + + D+G DD + KP E+LARV ++ RR Sbjct: 60 LEVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRA 119 Query: 120 KVSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + AE P+ + +D R+ G L R E +L+ LM N K +++ Sbjct: 120 SADSIAAE-APVESKLSFEDLELDADTREVSRGGRAISLTRTEFALLQLLMENPRKVLSR 178 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++I ++G +D N +E +I LRKK + + + R +GY Sbjct: 179 SKILEEVWG-YDFPTSGNALEVYIGYLRKKTEGEGDARLIHTVRGVGY 225 >gi|254517651|ref|ZP_05129707.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA] gi|226911400|gb|EEH96601.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA] Length = 233 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 7/147 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IRA S P+I +S + ++ DSG DD + KP E+LAR+ R++ Sbjct: 63 VDIIKKIRAWSNCPIIVVSARSEDKDKIEALDSGADDYLTKPFSVDELLARIRVAIRKMN 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIF 174 N + E + D + V G VF L E ++L L N GK + T I Sbjct: 123 YDNTKKEESTEFINGDLKIDYVSGCVFVGKEETHLTPIEYKLLCLLAKNVGKVLTHTYIL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 I+G+ E+ E + ++ LRKK+ Sbjct: 183 KEIWGVAYES-EVPSLRVFMATLRKKI 208 >gi|153007816|ref|YP_001369031.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151559704|gb|ABS13202.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] Length = 221 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A++ DG G G +++ ++ E ++ ++ L G G + Sbjct: 3 ILVVEDDAILLDGLTVGLGLAGFTVDAVSNCGDAEAALAAQNYHAVVLDLMLPDGSGLDI 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R R + P++ ++ + + D+G DD V KP E+ ARV A+ RR Sbjct: 63 LRTMR--RGRDETPVLLLTARDQVPERIAGLDAGADDYVGKPFDLHELAARVRAVARRGA 120 Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N E + + + GE L RRE IL LM +K+ + A+YG Sbjct: 121 GRANALLEWRGVELDPAEMSVLLHGEPVRLTRREFSILRALMERPTATFSKSSLEEALYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E VE N VE HI LR+KLG D +++ R +GY + Sbjct: 181 -WQEEVESNAVEVHI----HHLRSKLGSDYIETVRGVGYRL 216 >gi|15923649|ref|NP_371183.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|81854576|sp|Q932F1|GRAR_STAAM RecName: Full=Response regulator protein graR; AltName: Full=Glycopeptide resistance-associated protein R gi|14246428|dbj|BAB56821.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu50] Length = 224 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 7/159 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121 R +R S VP++ +S + + + G DD + KP + ++A++ AIYRR+ Sbjct: 64 RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R T V +D +G + L + E ILE L+ + + V++ I +A++ Sbjct: 124 EEKRTLTWQDAVVDLSKDSIQKGDDTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 182 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DEA V +N + ++S+LRKKL +++K GY Sbjct: 183 -DEAFVSDNTLTVNVSRLRKKLSEISMDSAIETKVGKGY 220 >gi|298695354|gb|ADI98576.1| two component sensor protein [Staphylococcus aureus subsp. aureus ED133] Length = 231 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 17/200 (8%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRA 69 D I D ++L+ +N E Q+ + + + L+ G + L L IR Sbjct: 11 DHAITHLLDVALTLDYYNVTTAENATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 H+ +P+I IS QT + D+G +D + KP + E+ AR+ I R ++ + ET Sbjct: 71 HTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIER---IAKSHQETN 127 Query: 130 PIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 VF++G + + L E +LE L ++GK + I IYG Sbjct: 128 I--VFTNGLLSIDFGSKSVVINNHEVHLTPNEFSLLELLANHKGKVLTYEMILKRIYGYV 185 Query: 182 DEAVEENVVESHISKLRKKL 201 ++ E + H++ LR+KL Sbjct: 186 NKT-EMPSLRVHMTSLRQKL 204 >gi|295425292|ref|ZP_06817995.1| response regulator [Lactobacillus amylolyticus DSM 11664] gi|295065068|gb|EFG55973.1| response regulator [Lactobacillus amylolyticus DSM 11664] Length = 259 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 18/155 (11%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R P+I ++ S+ + D G DD + KP E+LAR+ A+ RR+K Sbjct: 82 LEIARRVRQSKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVK 141 Query: 121 VSNNRAETGPIRVFSDG----RDPEVQ----------GEVFPLPRRERRILEYLMANRGK 166 + E + V +D ++ G+ L +RE +L L+ N+ Sbjct: 142 IE---KEAQNVTVAKQQTVKFKDLTIETANRIVHRGDGKAIDLTKREYNLLMTLIHNKNN 198 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 V++ ++ + I+G + +E NVVE ++ LR K+ Sbjct: 199 VVSRDELLNKIWG-PESNIETNVVEVYVRYLRNKI 232 >gi|251799571|ref|YP_003014302.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247547197|gb|ACT04216.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 233 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 24/223 (10%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L +GY L +G E ++ A+E V + ++ LE+ R +RA Sbjct: 23 LTNEGYQVLIAGNG-----------REAMELIAKESVQLMILDVMMPEMNGLEVVRAVRA 71 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 +P++ +S + +G DD + KP + E++ARV ++ RR N + +T Sbjct: 72 EYGIPILMLSAKAEDMDKIMGLTTGADDYMVKPFNALELIARVKSLLRRSIYLNTQLQTA 131 Query: 130 ---------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ V+ L E IL L ++ G+ + IF A++ Sbjct: 132 QDQDIIQIHSLKISKKSHTVTVEDRGINLTSTEFDILYLLASHPGQVFSAEAIFEAVWK- 190 Query: 181 FDEAVEE-NVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 D +E N V HISKLR KL ++L G + + +GY I+ Sbjct: 191 -DRFLESNNTVMVHISKLRDKLESELGGVKLIQTVWGVGYKIE 232 >gi|84515095|ref|ZP_01002458.1| Two component Transcriptional regulator, Winged helix family [Loktanella vestfoldensis SKA53] gi|84511254|gb|EAQ07708.1| Two component Transcriptional regulator, Winged helix family [Loktanella vestfoldensis SKA53] Length = 226 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 2/156 (1%) Query: 47 SAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106 + I ++ + + L +I R +P++ I+ + + D G DD + KP R Sbjct: 47 AVILDLMLPAADGIAILRQIRRQQRDLPVLVITARAEIDDKVSLLDLGADDYLVKPFDMR 106 Query: 107 EILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 E+ AR+ A+ RR + + + G + + R G++ L RRE +LE LM G Sbjct: 107 EMEARLRALVRRPVGQFTSVLQLGDLELDPASRIVRQAGQLIDLGRREFGLLEALMTQAG 166 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + V + ++ S + L D+ EN +E +S+LR+K+ Sbjct: 167 RVVTRERLMSRLSHL-DDGGSENALELLVSRLRRKI 201 >gi|30264882|ref|NP_847259.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530368|ref|YP_021717.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49187698|ref|YP_030951.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65322181|ref|ZP_00395140.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165869682|ref|ZP_02214340.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167633982|ref|ZP_02392305.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638026|ref|ZP_02396304.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685995|ref|ZP_02877218.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170705430|ref|ZP_02895894.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651313|ref|ZP_02934144.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567181|ref|ZP_03020096.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196032754|ref|ZP_03100167.1| DNA-binding response regulator [Bacillus cereus W] gi|218906044|ref|YP_002453878.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227817609|ref|YP_002817618.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228917471|ref|ZP_04081020.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929866|ref|ZP_04092881.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229604412|ref|YP_002869087.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687622|ref|ZP_05151478.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725188|ref|ZP_05186971.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736926|ref|ZP_05194632.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741961|ref|ZP_05199648.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754441|ref|ZP_05206476.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254757274|ref|ZP_05209301.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259557|gb|AAP28745.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47505516|gb|AAT34192.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49181625|gb|AAT57001.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164714511|gb|EDR20030.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167513843|gb|EDR89211.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530783|gb|EDR93485.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170129555|gb|EDS98418.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670459|gb|EDT21199.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083139|gb|EDT68201.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561685|gb|EDV15655.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994183|gb|EDX58138.1| DNA-binding response regulator [Bacillus cereus W] gi|218538505|gb|ACK90903.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227006263|gb|ACP16006.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228829782|gb|EEM75404.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842143|gb|EEM87242.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268820|gb|ACQ50457.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 229 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 8/150 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 66 RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVTKQ 125 Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E I V R V L E IL Y M N G + + Q+ S I Sbjct: 126 LLENEDDILSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNPGIVLTREQLISRI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207 +G ++ A ++ V SHI LR KL K + Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|331266318|ref|YP_004325948.1| DNA-binding response regulator, OmpR family [Streptococcus oralis Uo5] gi|326682990|emb|CBZ00607.1| DNA-binding response regulator, OmpR family [Streptococcus oralis Uo5] Length = 235 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 12/154 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP+I +S S + + G DD V KP +RE+ ARV A+ RR Sbjct: 61 LEVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120 Query: 121 V------SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + ++ +T P++ + D + GE L RE +L +L ++ G+ + Sbjct: 121 IVSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ I +LR+K+ + Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 213 >gi|323706155|ref|ZP_08117723.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534448|gb|EGB24231.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 231 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 15/164 (9%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI+R P++ ++ + + G DD V KP RE++ARV A RR +SN Sbjct: 65 RILRQTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRRSGISNG 124 Query: 125 RAETGPIRVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + V S D E G+ L RE +L++L+ANRG ++ + ++G Sbjct: 125 ETMSNVLSVNSLNIDLSKYRVEKNGKPIELTSREFDLLKFLVANRGLIFSREMLLEKVWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 ++ + V+ I +LR+K+ + DP + +KR +GY Sbjct: 185 -YEYFGDVRTVDVTIRRLREKIED----DPANPRYIHTKRGVGY 223 >gi|271963089|ref|YP_003337285.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506264|gb|ACZ84542.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 241 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 11/166 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ R ++A VP++ ++ L G DD + KP RE++ARV A+ RR Sbjct: 78 LEVCRRMQAARPVPVLMLTALGEETDLLVGLGVGADDYMTKPFSMRELVARVHALLRRVE 137 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 L V++ G + + + R V+G L R E +L L G+ + ++ Sbjct: 138 RASQLAVADPVIRAGDVEIDTAERRVYVRGAEAQLTRTEFDLLCRLAERPGQVFERERLL 197 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + I+G F EA V+SH+ + LR KLG V + +GY++ Sbjct: 198 NDIWG-FSEAAATRTVDSHV----RALRRKLGPGVVRTVHGVGYAL 238 >gi|331083722|ref|ZP_08332833.1| hypothetical protein HMPREF0992_01757 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403933|gb|EGG83485.1| hypothetical protein HMPREF0992_01757 [Lachnospiraceae bacterium 6_1_63FAA] Length = 223 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 19/170 (11%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ + ++ + P+I ++ ++ + G DD + KP H +LAR+ +R Sbjct: 62 EICKQLKEKNLCPVIILTSRTQIEDEIHGLKLGADDFLTKPYHKGRLLARIENTLQRFSG 121 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 LK S + ++++ LP +E +ILE L+ + G+ V+K +F Sbjct: 122 FEGILKGSGFYLDKHTYTLYTENYSK-------VLPEKEGKILEVLLEHSGEIVSKEDLF 174 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223 ++G V+EN+++ ++++LRK L N LG + V + R GY WN Sbjct: 175 LMVWGT-QVYVDENILQVNMTRLRKTL-NTLGLKNMVQTVRGRGYL--WN 220 >gi|301024924|ref|ZP_07188536.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300396299|gb|EFJ79837.1| response regulator receiver domain protein [Escherichia coli MS 69-1] Length = 229 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ V + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 + + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ ++ Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQICWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRSMGYSL 226 >gi|301056320|ref|YP_003794531.1| DNA-binding response regulator [Bacillus anthracis CI] gi|300378489|gb|ADK07393.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 229 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 8/150 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 66 RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVTKQ 125 Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E I V R V L E IL Y M N G + + Q+ S I Sbjct: 126 LLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNPGIVLTREQLISRI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207 +G ++ A ++ V SHI LR KL K + Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|257482878|ref|ZP_05636919.1| DNA-binding response regulator QseB, putative [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 142 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 12/135 (8%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEV 146 D+G DD + KP E+ ARV A+ RR S RA E I + + QG Sbjct: 13 LDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQPLLEHAGISLDPASQQVSFQGSE 69 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 P+ E ++L LM GK V + ++ + +YG D+ VE N +E I LRKKL +L Sbjct: 70 VPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYGWQDK-VESNTLEVLIHNLRKKLSTEL- 127 Query: 207 FDPVDSKRFLGYSID 221 + + R +GY ++ Sbjct: 128 ---IRTVRGVGYLLE 139 >gi|229822256|ref|YP_002883782.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229568169|gb|ACQ82020.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 232 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 5/147 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ IR SQVP+I +S +D D+G DD V KP E+LAR+ A RR Sbjct: 67 LEVIEGIRGWSQVPIIVLSARQLGDDKVDALDAGADDYVTKPFAMPELLARLRAAVRRSA 126 Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E G + + R+ GE L E +LE L+ +RG+ V + + Sbjct: 127 LVGEPDEPVVSAGDLEIDLARREVRRSGEPVRLSPTEWALLEQLVQHRGRVVGREHLLRE 186 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203 ++G E + + ++++LR+KL + Sbjct: 187 VWG-PTATREGHYLRVYVAQLRRKLED 212 >gi|228983852|ref|ZP_04144047.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775901|gb|EEM24272.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 235 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 8/152 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 79 ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 135 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N R + + D V E L E +L + + + + Q+ I+G Sbjct: 136 TNQRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 195 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 L + E+ V+SHI LR KLR K+ F P+D Sbjct: 196 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PID 224 >gi|242309377|ref|ZP_04808532.1| DNA-binding response regulator [Helicobacter pullorum MIT 98-5489] gi|239523948|gb|EEQ63814.1| DNA-binding response regulator [Helicobacter pullorum MIT 98-5489] Length = 221 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 19/164 (11%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L I ++ ++P I I+ S++ F SG DD + KP E+L R+ A+ +R Sbjct: 65 LKSIHQSGRRIPAIFITALNSIKDLEIGFKSGCDDYLRKPFELSELLLRIEALLKR---- 120 Query: 123 NNRAETGPIRVFSDGRDPE-------VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +NR + I F +G + ++G+V L +ER +L+ L+ N V +I+S Sbjct: 121 SNRMQ---IYDFGNGYSFDCGEGILYLEGKVCKLSAKERELLKILLVNENHFVPLEEIYS 177 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 A++G ++E E + +I K LR +G D + ++R GY Sbjct: 178 ALWG-YEEEPSELSLRVYI----KDLRQIVGKDNILTRRGEGYC 216 >gi|50955358|ref|YP_062646.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951840|gb|AAT89541.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 233 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 3/158 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ A P++ ++ + + G DD V KP EI+AR+ AI RR ++ Sbjct: 72 RLRGAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTMQADE 131 Query: 125 RA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 A G + + D + V L E ++L YLM N + ++K QI ++ +D Sbjct: 132 DAVIRAGELTMDQDTHEVFVGDTPIELSPTEFKLLRYLMLNPNRVLSKAQILDHVWE-YD 190 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +VES+IS LR+K+ + +KR GY + Sbjct: 191 FNGDAGIVESYISYLRRKVDAHSSEALIQTKRGFGYML 228 >gi|52080824|ref|YP_079615.1| two-component response regulator YclJ [Bacillus licheniformis ATCC 14580] gi|52786195|ref|YP_092024.1| hypothetical protein BLi02455 [Bacillus licheniformis ATCC 14580] gi|319645218|ref|ZP_07999451.1| hypothetical protein HMPREF1012_00484 [Bacillus sp. BT1B_CT2] gi|52004035|gb|AAU23977.1| two-component response regulator YclJ [Bacillus licheniformis ATCC 14580] gi|52348697|gb|AAU41331.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317393027|gb|EFV73821.1| hypothetical protein HMPREF1012_00484 [Bacillus sp. BT1B_CT2] Length = 233 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 11/151 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + + +P++ I+ + + + G DD + KP RE++AR+ I RRL+ Sbjct: 63 LDICKKVTESCNIPILMITAKSDITDKILGLEFGADDYITKPFDLREVVARIRTILRRLE 122 Query: 121 VSN--NRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 ++ N ET I + R + G L +E +L L+ +RGK + Sbjct: 123 QAHHVNERETEKVDEIRFKNIVIVPGERLVKKDGAAVELTPKEYDLLMTLVDHRGKVFTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +++ I+G +D + V++HI +LRKKL Sbjct: 183 SELLEFIWG-YDFFGDTRTVDTHIQRLRKKL 212 >gi|56750113|ref|YP_170814.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] gi|56685072|dbj|BAD78294.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] Length = 218 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 8/148 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S VP+I ++ + + + G DD V KP +E+ ARV ++ RR++ S Sbjct: 45 LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELKARVRSVLRRVEKSGANG 104 Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + IR+ ++ R E L E +LE L++ G+ ++ +I ++G Sbjct: 105 IPSSGVIQINSIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRAEILQEVWG 164 Query: 180 LFDE-AVEENVVESHISKLRKKLRNKLG 206 E V+ VV+ HIS+LR KL + G Sbjct: 165 YTPERHVDTRVVDVHISRLRAKLEDDPG 192 >gi|328956405|ref|YP_004373791.1| two-component response regulator [Carnobacterium sp. 17-4] gi|328672729|gb|AEB28775.1| two-component response regulator [Carnobacterium sp. 17-4] Length = 235 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/211 (24%), Positives = 92/211 (43%), Gaps = 12/211 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D I F E F + + EE L+ I L+ + L Sbjct: 4 ILVVDDEKPISD--IVKFNLTKEGYEVFTAYDGEEALEKVEEVLPDLIILDLMLPKKDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R + +P+I ++ S + + G DD V KP +RE+ ARV A RR Sbjct: 62 EVCREVRKNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELTARVKANLRRHDN 121 Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ N E G + + D +G L RE +L YL + G+ + + Sbjct: 122 AKTPVVEEIETNDIEVGALTIHPDAYIVSKRGATIELTHREFELLHYLAKHLGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ + +LR+K+ + Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIED 211 >gi|322389092|ref|ZP_08062657.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321144228|gb|EFX39641.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 224 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 15/159 (9%) Query: 67 IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +R H + P++ ++ SL+ + D+G DD + KP E+LAR+ + RR NNR Sbjct: 66 LRNHQIKTPVLMLTAKDSLEDKVTGLDAGADDYLVKPFEFDELLARIRVMLRR----NNR 121 Query: 126 AETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + F D + + +G + L +E +LE L+ + +++ QI I+ Sbjct: 122 ENLTNLVQFGDYSLDLAKKTIQHKGVLVDLTSKEYELLECLVRHPNVVLSREQIREHIWD 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD E N+++ + +RKKL N + +KR +GY Sbjct: 182 -FDYVGESNIIDVLVKNIRKKLGNP---SIIQTKRGMGY 216 >gi|319947435|ref|ZP_08021667.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319746375|gb|EFV98636.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 224 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 15/159 (9%) Query: 67 IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +R H + P++ ++ SL+ + D+G DD + KP E+LAR+ + RR NNR Sbjct: 66 LRNHQIKTPVLMLTAKDSLEDKVTGLDAGADDYLVKPFEFDELLARIRVMLRR----NNR 121 Query: 126 AETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + F D + + +G + L +E +LE L+ + +++ QI I+ Sbjct: 122 ENLTNLVQFGDYSLDLAKKTIQHKGVLVDLTSKEYELLECLVRHPNVVLSREQIREHIWD 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD E N+++ + +RKKL N + +KR +GY Sbjct: 182 -FDYVGESNIIDVLVKNIRKKLGNP---SIIQTKRGMGY 216 >gi|317132020|ref|YP_004091334.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469999|gb|ADU26603.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 229 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 16/188 (8%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIGISD 80 LE E + +S + V AI+ F K + VL ++ R IR S+ P+I I+ Sbjct: 23 LEKEGYSVASTYDGVDAIKKFEDHKPDLVLLDIMLPGMDGWQVCREIRKKSEKPVIMITA 82 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN----RAETGPIRVFSD 136 + + G DD + KP +E++AR+ A+ RR + N + V Sbjct: 83 KGETFDKVLGLELGADDYIVKPFDAKEVVARIKAVLRRYSGAENDTVKEVRYDNLVVNLT 142 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 + V G++ P +E +L +L +N + + Q+ ++G F+ + V+ HI + Sbjct: 143 NYELRVAGQLVDAPPKELELLYHLASNPNRVYTRDQLLDEVWG-FEYYGDSRTVDVHIKR 201 Query: 197 LRKKLRNK 204 LR+KL K Sbjct: 202 LREKLEGK 209 >gi|253576274|ref|ZP_04853605.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251844401|gb|EES72418.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 224 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 76/152 (50%), Gaps = 3/152 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A +P++ ++ ++ + F G DD + KP +E+L R+ A+ RR +++N R Sbjct: 70 AGDNIPILMVTAAHDIKFKHNGFLVGTDDYMTKPFDEQELLFRIKALLRRAQIANERRLV 129 Query: 129 GPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 V ++G + LP++E +L L++ K + Q+ I+G D ++ Sbjct: 130 VGETVLDYNALTVIRGNQQISLPQKEFYLLFKLLSYPNKIFTRLQLLEEIWGP-DTETDD 188 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + HI++LR K R+ F+ V + R LGY Sbjct: 189 HTLNVHINRLRDKFRDSPDFEIV-TVRGLGYK 219 >gi|296131358|ref|YP_003638608.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] gi|296023173|gb|ADG76409.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] Length = 237 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 14/164 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R S +I ++ TL G DD V KP RE++ARV + RR + Sbjct: 66 VEVCRQLRTFSDCYVIMLTARAEEVDTLIGLSVGADDYVTKPFSPRELMARVGVLMRRPR 125 Query: 121 VS--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + G + V +D R+ V GE L R E +L L A G +++ Sbjct: 126 RTPGPAAPAPSAAVTIGSLTVDTDAREVHVDGEPVALTRTEFDVLAALAARPGVVLSRRA 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + A++G +E++V+ H+ +R+KL D + +RF+ Sbjct: 186 LIEAVWG-AGWVGDEHLVDVHVLHVRQKL-----GDSAEQQRFV 223 >gi|188575282|ref|YP_001912211.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519734|gb|ACD57679.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 226 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 19/172 (11%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I ++ + D+G +D V KP +E++AR+ A+ R+ Sbjct: 59 EMLREIRQWSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQAGA 118 Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E+ VF DG R+ + GE PL R+E +L L+ + G+ V + Q+ Sbjct: 119 GSTVEES----VFDDGRLHIHLGLREVTLNGEAVPLSRKEYALLALLLKHAGRVVTQPQL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG------FDPVDSKRFLGYS 219 ++G E + + + + KLR+KL++ +P RF+G + Sbjct: 175 LRELWGPTHEE-DTHYLRILVGKLRQKLQDDAAAPHYIVTEPGVGLRFIGVT 225 >gi|209545558|ref|YP_002277787.1| winged helix family two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209533235|gb|ACI53172.1| two component transcriptional regulator, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 266 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPI 131 P+I I+ + + G DD V I E+LAR+ AI RR ++ + G + Sbjct: 74 TPVIIIARDTTPPAIAEVLSVGADDCVPASIDPTELLARLRAIVRRAGGHDSLTLQIGRL 133 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V + R+ + G+ PL RRE ++E L + + ++K + ++Y E V++ Sbjct: 134 TVNVNQREVHIDGKPVPLTRREYDVVELLALRKNQALSKESVLDSLYAGQHEP-SGKVID 192 Query: 192 SHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 I K+RKK+R LG +P+ ++ +GY ++ Sbjct: 193 VMICKIRKKMRG-LGIEEPLTTQWGIGYRLN 222 >gi|152990660|ref|YP_001356382.1| two-component response regulator [Nitratiruptor sp. SB155-2] gi|151422521|dbj|BAF70025.1| two-component response regulator [Nitratiruptor sp. SB155-2] Length = 222 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 4/165 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ + L + + +P + +S S++ ++ G D + KP RE+L RV I Sbjct: 58 GDGITLLKYMEQKQINIPCLILSVLGSVENKIEGLSLGAYDYLTKPFDIRELLIRVKNII 117 Query: 117 R-RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + R + N G + + R V+ + L +E +IL+ LM NR K + K++I Sbjct: 118 KIRYNIQTNIVRIGNVSINLFSRKVYVKDKNIKLTPQEYKILKLLMTNRNKVIEKSEIMD 177 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +E+ N+V+ + +LRKKL + D + + + +GY I Sbjct: 178 RLGIEQNESHNSNIVDVLVYRLRKKLGKQ---DFIQNIKKIGYVI 219 >gi|39996204|ref|NP_952155.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39982969|gb|AAR34428.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298505216|gb|ADI83939.1| winged-helix phosphate transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 225 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 16/216 (7%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIR 68 L K+GY L +L+G N LE L S D+ ++ L G G +V ++ + Sbjct: 21 LEKEGYRTL-----TALDGANGLE----LARSQPPDLILLDLMLPGMMGMEVCKILKKSE 71 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNR 125 + +P+I ++ + F+ G DD V KP RE+L RV A+ RR K Sbjct: 72 KTAHIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRVKAVLRRSLPDKPEGKV 131 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 GP+ + ++ V+G+ L E ++L L G+ ++ + ++G ++ Sbjct: 132 INVGPVTIDTERHMVAVEGDDVTLTTTEFKLLLNLAERLGRVQSRDLLLKNVWG-YNYVG 190 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V++HI++LR KL + + + R GY ++ Sbjct: 191 DTRTVDTHITRLRTKLGQ--AGELIKTVRGFGYKME 224 >gi|89098508|ref|ZP_01171391.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89086753|gb|EAR65871.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 223 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 7/161 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R SQVP++ +S + +G DD ++KP + E+ ARV A+ RR S Sbjct: 63 VRKSSQVPILMVSAKVEDMDKIVGLMTGADDYMSKPFNPLELTARVKALLRRANYSQPEK 122 Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + GP+ + +G L E IL L N+G+ + +IF +++ Sbjct: 123 GDAVLQIGPLAIDKQKHHVLAEGNSIKLTSIEFEILYLLARNQGRVFSSEEIFESVWNEP 182 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 E + V+ HIS LR+KL L G + + +GY I+ Sbjct: 183 GEGSNKTVM-VHISNLREKLEAALPGEKIIHTVWGVGYKIE 222 >gi|328949779|ref|YP_004367114.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328450103|gb|AEB11004.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 221 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 8/179 (4%) Query: 27 EGFNSLEFEEWLQS---SAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYP 82 E F LE E+ LQ+ + D+ ++ L G G +V + R R +P++ ++ Sbjct: 24 ERFEVLEAEDGLQALEQAPGADLVILDLMLPGMDGWRVAQELR--RDWPDLPILMLTARG 81 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV 142 + + F+ G DD V KP RE++ARV A+ RR+ + + GP+ + R+ + Sbjct: 82 EEEERVRGFELGADDYVTKPFSPREVVARVRALLRRVGLKDELV-YGPLVIRPRAREVLL 140 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +G+ L R E +L L + G + ++ ++G E V + VV+ H++ LRKKL Sbjct: 141 EGQPVALSRLEFDLLLTLARHPGMVFTRERLLERVWGPGFEGV-DRVVDVHVALLRKKL 198 >gi|325295330|ref|YP_004281844.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065778|gb|ADY73785.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] Length = 223 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 18/158 (11%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 + P++ ++ S++ + DSG DD + KP + E+LAR+ A+ RR + ++T I Sbjct: 72 KTPILMLTAKDSVEDKVKGLDSGADDYLTKPFSYDELLARIRALLRR----KSESKTSFI 127 Query: 132 RVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ +D E+ G L ++E + L L N+ + ++K + ++Y D Sbjct: 128 KI----KDLEIDLNKKIVKRAGNEIKLTKKEFKALTLLALNKNRVISKEFLIDSLYST-D 182 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V N +E I++LRKK+ + + + GY I Sbjct: 183 RFVSINAIEVLINRLRKKIDKDYPLKLIHTIKGFGYMI 220 >gi|332654966|ref|ZP_08420708.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332516309|gb|EGJ45917.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 230 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 6/129 (4%) Query: 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR---- 132 G+S + + ++ +G DD + KP ++E+L R+ A+ RR + S + +R Sbjct: 80 GVSARTDIDSKVNLIRNGADDYITKPFDNQELLVRIEAVLRRFQKSTTPNNSKILRFKDL 139 Query: 133 -VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + ++ + +++ L R E IL+ LM++ K K IF +++ + ++N + Sbjct: 140 SLDTEAMEAKIRNTPITLTRYEYLILQLLMSSPSKVFTKNNIFESVWN-ENFIGDDNAIN 198 Query: 192 SHISKLRKK 200 HI LRKK Sbjct: 199 VHIGNLRKK 207 >gi|260554988|ref|ZP_05827209.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|260411530|gb|EEX04827.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] Length = 247 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +Q P+I ++ + G DD V KP + E++ARV A+ RR + +N Sbjct: 78 IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 137 Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 I + +D + E + L E +I+ +++ K + ++ + + Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D E V+SH+SKLRKKL + F + + R +GY +D Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238 >gi|257870291|ref|ZP_05649944.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257804455|gb|EEV33277.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 235 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 10/117 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLK------VSNNRAET---GPIRVFSDGRDPEVQG 144 G DD + KP RE+LAR+ AI+RRL+ +S+ AE G I V+G Sbjct: 95 GADDYLTKPFSPREVLARMKAIFRRLEPRGTADLSDQPAEMLQIGDILADLTNYQVSVKG 154 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E L +E +L Y M +G+ + + + + I+ FD + +V+ HIS LR+KL Sbjct: 155 EKIFLTPKEFELLIYFMKRKGRVIDRDTLLNRIWN-FDFDGQSRIVDVHISHLREKL 210 >gi|223985510|ref|ZP_03635567.1| hypothetical protein HOLDEFILI_02873 [Holdemania filiformis DSM 12042] gi|223962527|gb|EEF66982.1| hypothetical protein HOLDEFILI_02873 [Holdemania filiformis DSM 12042] Length = 269 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 85/168 (50%), Gaps = 26/168 (15%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP++ +S + + + G DD + KP ++AR+ A+ RR + + Sbjct: 112 IRKLSKVPILFLSSHNENLDIIMALNQGGDDYLTKPFSMEILVARIQALLRR---AYSYE 168 Query: 127 ETGPIRVFS-------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +G + F DGR E L + E +IL+ L+ N+ K V++ +I Sbjct: 169 PSGTLMEFQGAVFNLADASLSKDGRQCE-------LTKNEFKILQLLLENKNKVVSREKI 221 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 ++ D V+EN + ++++LR+K+ +LG D +++++ LGY + Sbjct: 222 MLKLWN-NDCFVDENTLTVNVNRLRRKME-QLGIDDCIETRKGLGYQL 267 >gi|297202947|ref|ZP_06920344.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197711939|gb|EDY55973.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 246 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 15/161 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLD---FFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 IRA PLI + S T LD SG DD + KP RE++AR+ A+ RR+ Sbjct: 66 IRARGNTPLI---TFTSRDTELDRVLSLRSGADDCLVKPYGFRELIARMNAVARRVTTGG 122 Query: 124 N--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G +R+ R+ + L R+E IL L + +++ + +A++ Sbjct: 123 GPVGVSCGALRLDPGAREARLGERSLELTRKEFDILLLLASAPETVISRRDLIAAVWA-- 180 Query: 182 DE-AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE A+ V++H+S LR KLG + + R +GY ++ Sbjct: 181 DEWAISTRTVDTHVSALRA----KLGEGWITTVRGVGYRLE 217 >gi|162295955|gb|ABX83925.1| AdeR [Acinetobacter baumannii] Length = 247 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +Q P+I ++ + G DD V KP + E++ARV A+ RR + +N Sbjct: 78 IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 137 Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 I + +D + E + L E +I+ +++ K + ++ + + Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D E V+SH+SKLRKKL + F + + R +GY +D Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238 >gi|26990850|ref|NP_746275.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24985860|gb|AAN69739.1|AE016610_5 transcriptional regulatory protein KdpE [Pseudomonas putida KT2440] Length = 231 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 14/164 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G++VL R +R S VP++ +S S +D D G +D V KP +E LARV A+ Sbjct: 63 GQQVL---RELREWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALL 119 Query: 117 RRLKVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R++ + A GP+ V R + G L R+E +L L + G+ + + Q+ Sbjct: 120 RQVPQAGGSEVAASFGPLTVDFAFRRVTLDGVEVALTRKEYALLAILAGHPGRVITQQQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216 I+G + ++H ++ LR KLG DP + RF+ Sbjct: 180 LKDIWG------PTHAEDTHYLRIVVGHLRQKLGDDPT-APRFI 216 >gi|17942992|pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM Thermotoga Maritima Length = 225 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 2/148 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130 P++ ++ ++ + + G DD + KP RE++ARV A+ RR S + + G Sbjct: 74 NTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGD 133 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + + L ++E +ILEYL+ N+ + V K ++ ++ FD+ V +V+ Sbjct: 134 LILDTATKKAYRGSKEIDLTKKEYQILEYLVXNKNRVVTKEELQEHLWS-FDDEVFSDVL 192 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 SHI LRKK+ + + R +GY Sbjct: 193 RSHIKNLRKKVDKGFKKKIIHTVRGIGY 220 >gi|220932997|ref|YP_002509905.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] gi|219994307|gb|ACL70910.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] Length = 226 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 85/167 (50%), Gaps = 13/167 (7%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 L R +R++++ +P+I ++ + + G DD + KP RE++AR+ A+ R Sbjct: 60 LSFCRQVRSNNRFKDIPIIMLTAKGEEVDKIIGLEMGADDYITKPFSPRELVARIKAVLR 119 Query: 118 RLKVSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R++ + +++ I+ + + GEV L +E +L +L+ N GK + + Sbjct: 120 RVQKNEEKSDNELIKKADFELDVSSHEARKGGEVLNLTPKEFDLLRHLLVNSGKVLTRDI 179 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + ++G ++ A + V+ HI ++LR K+G + + + R +GY Sbjct: 180 LLEKVWG-YEYAGDTRTVDVHI----RRLRRKIGDNYIVTVRGVGYK 221 >gi|84684965|ref|ZP_01012865.1| Phosphate regulon transcriptional regulator, PhoR [Maritimibacter alkaliphilus HTCC2654] gi|84667300|gb|EAQ13770.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacterales bacterium HTCC2654] Length = 229 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 3/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R + +P+I +S + ++G DD + KP +E++AR+ RR + ++ + Sbjct: 75 RETTDIPVIMLSARSDEMDRVRGLETGADDYMVKPFSVQELMARIRTQLRRTRPASVGQQ 134 Query: 128 TGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + DG V G+ L E R+L M G+ ++ Q+ ++G D V Sbjct: 135 LAYEDIILDGETHRVTRGGDPIKLGPTEFRLLTTFMEKPGRVWSREQLLDRVWG-RDVYV 193 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + V+ H+ +LRK L G DP+ + R GY++ Sbjct: 194 DTRTVDVHVGRLRKALCKTGGDDPLRTVRGTGYAL 228 >gi|320531513|ref|ZP_08032466.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320136270|gb|EFW28265.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 219 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 23/158 (14%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 VP+I ++ S+ + + G DD + KP E+LAR+ +V TGP + Sbjct: 74 VPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARI-------RVRLRPDTTGPDQ 126 Query: 133 VFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182 + RD ++G L RE + E M + G+ +++ Q+ S+++GL FD Sbjct: 127 MRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAEAFMRHPGQVLSREQLLSSVWGLDFD 186 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVVE ++S LRNKLG V++ R +GY + Sbjct: 187 PG--SNVVEVYVS----YLRNKLGRQRVETVRGMGYRL 218 >gi|322417641|ref|YP_004196864.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320124028|gb|ADW11588.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 234 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 5/144 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +E+ R +R S+VP+I IS + DSG DD + KP E+LAR+ RR Sbjct: 70 MEVIRRVREWSRVPIIVISVREREDEKVQALDSGADDYLTKPFGIGELLARIKVALRRSL 129 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E G +RV R V+GE L E +L L+ + GK + +QI I+ Sbjct: 130 QQAPEPVFEVGELRVDLPHRRVSVRGEEVQLTPTEYELLRMLVTHAGKVLTHSQILKQIW 189 Query: 179 GL-FDEAVEENVVESHISKLRKKL 201 G+ + E + +V+ +IS LR K+ Sbjct: 190 GVAYLE--QPHVLRVNISNLRHKI 211 >gi|238854218|ref|ZP_04644563.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri 202-4] gi|238833154|gb|EEQ25446.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri 202-4] Length = 221 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 DSG DD + KP +E+LAR+ + RR + + N E G + + V L Sbjct: 91 LDSGADDYLTKPFSLKELLARLRSKERRDDQYTPNEVEVGDL-ALNVSEQELVSHNSIRL 149 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 +E ++L YLM N GK + + + + ++ D+A EE VV +IS LR+KLR+ Sbjct: 150 GSKETQLLNYLMLNEGKEFSTSDLLAHVWKDEDDANEE-VVWIYISYLRQKLRS 202 >gi|224823455|ref|ZP_03696564.1| two component transcriptional regulator PhoB, winged helix family [Lutiella nitroferrum 2002] gi|224603910|gb|EEG10084.1| two component transcriptional regulator PhoB, winged helix family [Lutiella nitroferrum 2002] Length = 229 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETG 129 QVP+I ++ Q + ++G DD + KP RE+LAR+ A+ RR +++++ E Sbjct: 76 QVPIIMLTARSDEQDKIVGLETGADDYITKPFSPRELLARIKAVLRRRAPQMTDDAVEVK 135 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEEN 188 +R+ G L E R+L + M + + ++ Q+ ++G D VEE Sbjct: 136 GLRLDPATHRVSTDGNPIDLGPTEFRLLHFFMTHPERVHSRAQLLDQVWG--DHVFVEER 193 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ HI +LR L + + R GY Sbjct: 194 TVDVHIRRLRSSLEATGHDGLIQTVRGTGY 223 >gi|222524928|ref|YP_002569399.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|222448807|gb|ACM53073.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 245 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 6/140 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA S VP++ I+ + F G D+ + KP E +ARV AI RR+ + R Sbjct: 84 IRAKSDVPIVIITAREGTDDIVQGFRRGADEYITKPFKVAEFVARVEAILRRVDMQKART 143 Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + + + V+G+ L E +L +L AN G+ + +F ++G + Sbjct: 144 APTFVQVGELVIDAAAHKVAVRGKEVKLTPMEFELLYFLAANAGQVFTREVLFREVWG-Y 202 Query: 182 DEAVEENVVESHISKLRKKL 201 + E N+V+ + +LR+K+ Sbjct: 203 EYVGETNLVDVCVRRLREKV 222 >gi|111220157|ref|YP_710951.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Frankia alni ACN14a] gi|111147689|emb|CAJ59345.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Frankia alni ACN14a] Length = 240 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 14/193 (7%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVD 96 L AR D+ ++ L E+ R +RA Q VP++ ++ + + + G D Sbjct: 43 LAVQARPDLMILDVML--PDVDGFEVCRTLRAGGQSVPVVYLTARDAHRDKIAGLTYGGD 100 Query: 97 DVVNKPIHHREILARVAAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQ-----GEVF 147 D V KP E++ARV A+ RR +R DP+ GE Sbjct: 101 DYVTKPFAVDELVARVRAVLRRTSPPRPEPAPDPPATTLRFADVELDPDTHVVRRAGEPI 160 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E +L Y + N + +++ QI A++ +D A E VV+ ++S LR+KL + G Sbjct: 161 ELSPTEFTLLRYFLTNPNRVLSRVQILDAVWS-YDFAGEPTVVDQYVSYLRRKL-GRHGP 218 Query: 208 DPVDSKRFLGYSI 220 + ++R GY++ Sbjct: 219 SLIHTQRGFGYAL 231 >gi|163939801|ref|YP_001644685.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229132829|ref|ZP_04261674.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|163861998|gb|ABY43057.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228650656|gb|EEL06646.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] Length = 225 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/156 (22%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ ++ + F G DD + KP E++ RV A+ +R +++ +++ Sbjct: 68 LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQITVSQS 127 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + V + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 128 IQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + +L + + R LGY ++ Sbjct: 187 NERTLDVHINRLREKFQEELSKFSIRTIRGLGYRLE 222 >gi|257865288|ref|ZP_05644941.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257871616|ref|ZP_05651269.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257874888|ref|ZP_05654541.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325571477|ref|ZP_08146977.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|257799222|gb|EEV28274.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257805780|gb|EEV34602.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257809054|gb|EEV37874.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325155953|gb|EGC68149.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 237 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 11/210 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D I F E + + + EE L+ A D I L+ L Sbjct: 7 ILVVDDEKPISD--IVKFNLTKEGYEVYTAYDGEEALEKVAEVDPDLILLDLMLPKMDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 65 EVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSA 124 Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +N+ G + + D G L RE ++ YL + G+ + + + Sbjct: 125 AAKEADDNANSELTIGDLTIHPDAYMVTKNGAAIELTHREFELMHYLAKHLGQVMTREHL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++G +D + V+ + +LR+K+ + Sbjct: 185 LQTVWG-YDYFGDVRTVDVTVRRLREKIED 213 >gi|209526757|ref|ZP_03275279.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209492801|gb|EDZ93134.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 253 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 9/162 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA S +P+I ++ + + + G DD + KP +E+ AR+ AI RR K + + Sbjct: 79 IRAISDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRRFKDNASSH 138 Query: 127 ETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + P +R+ + R ++ PL E +LE L G+ V++++I ++G Sbjct: 139 DLSPEVIQVDTLRIDTIKRRVYKGDKLLPLTYIEFNLLELLFKRSGEAVSRSEILQQLWG 198 Query: 180 LFDEAVEE-NVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + VV+ H+++LR K+ ++ + + + R +GYS Sbjct: 199 YTPRRIADMRVVDVHVARLRAKIETDQRNPEYILTVRGIGYS 240 >gi|196039567|ref|ZP_03106872.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196029727|gb|EDX68329.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 225 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 7/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++D S + + +G DD + KP E++ARV AI RR Sbjct: 62 EICRQIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSN- 120 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + ET + +F D V+ G+ L +RE +L +L+ N+ +++ + + Sbjct: 121 CNQQHETTFFQFKDLFVDASSNIVKKAGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ V NVV+ +I +RKKL+ + + + GYS+ Sbjct: 181 VWG-YNVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 223 >gi|163847988|ref|YP_001636032.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525870|ref|YP_002570341.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669277|gb|ABY35643.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449749|gb|ACM54015.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 231 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 15/138 (10%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-----NRAETGPIRVFSDGRDPEVQGE 145 + G DD + KP RE++ARV A++RR + S + GP+ + S+ + G Sbjct: 93 LEVGADDYLVKPFSPRELVARVRAMFRRPRQSGYIDEPSTMTVGPLTIDSESHTVRLDGV 152 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 L E R+L L A G+ ++ Q+ ++G + +E+V+E HI+ LRK KL Sbjct: 153 PINLTPLEYRLLTILAAAPGRVFSRAQLLDQVWG-NNYFGDEHVLEVHIANLRK----KL 207 Query: 206 GFDPVDSK-----RFLGY 218 G DP + R +GY Sbjct: 208 GDDPARPRFIFTVRSVGY 225 >gi|296876915|ref|ZP_06900961.1| response regulator (family protein to RR01Spn & Sth) [Streptococcus parasanguinis ATCC 15912] gi|296432107|gb|EFH17908.1| response regulator (family protein to RR01Spn & Sth) [Streptococcus parasanguinis ATCC 15912] Length = 260 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP +LA+V + RR Sbjct: 102 IRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKVQGLLRRSYEFGTDQ 161 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N E + D +GEV L + E +IL L + G VA+ + ++ D Sbjct: 162 NLLEHRGAILNLKSTDLMYEGEVIKLTKNEFQILRVLFEHTGSIVARDDMMKELWN-SDF 220 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +++K+ +GY + Sbjct: 221 FIDDNTLSVNVARLRKKLEEAGLSNFIETKKGIGYGL 257 >gi|302559265|ref|ZP_07311607.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302476883|gb|EFL39976.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 231 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 29/224 (12%) Query: 9 ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 AL +DG+ DG+S LE F + R D++ ++ + G + L R I Sbjct: 23 ALERDGFAVTAMPDGLSGLEAFRT----------DRPDIALLDVMV--PGLDGVSLCRRI 70 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN--- 124 R S VP+I +S + ++G DD V KP ++AR+ A+ RR +N Sbjct: 71 RDESMVPVIMLSARADAIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGRANGGRE 130 Query: 125 --RAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 A+ G + F + G + G+ L E R+L A G +++ ++ Sbjct: 131 EPAADAGGVLAFGELEIDTGGMEVRRAGQPVALTPTEMRLLLEFSAAPGTVLSRDKLLER 190 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + + VV+ H+ ++LR K+G D +++ R GY + Sbjct: 191 VWE-YGWGGDTRVVDVHV----QRLRTKIGQDRIETVRGFGYKL 229 >gi|172056682|ref|YP_001813142.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989203|gb|ACB60125.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 228 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 5/139 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSN 123 IR S VP+I ++ + G DD + KP RE+LAR+ A R R V Sbjct: 71 IREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHRFTVDQ 130 Query: 124 NRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + T G + + ++ R V G+ L R+E +L + N K ++ Q+ I+G D Sbjct: 131 SATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQIWGA-D 189 Query: 183 EAVEENVVESHISKLRKKL 201 V++HI LR KL Sbjct: 190 YIGNLRTVDTHIKTLRLKL 208 >gi|164688245|ref|ZP_02212273.1| hypothetical protein CLOBAR_01890 [Clostridium bartlettii DSM 16795] gi|164602658|gb|EDQ96123.1| hypothetical protein CLOBAR_01890 [Clostridium bartlettii DSM 16795] Length = 236 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 106/233 (45%), Gaps = 37/233 (15%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI--------GKGEKVLELP 64 D IA V EGFN L+ E L++ AR+ V++ E LI G G E Sbjct: 10 DSTIAFAVKYAVEQEGFN-LDIAENLEN-ARKIVNSKEYDLILLDVMLPDGNG---YEFL 64 Query: 65 RIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----- 118 + +R H + P+I ++ + D G DD + KP RE+++R+ AI RR Sbjct: 65 KQLREHDEDTPVIFLTACDEEVNIVMGLDIGGDDYITKPFRVRELISRINAILRRKGKSQ 124 Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 LK N T RVF + E+F L E ++L L+ N+ +++ Q Sbjct: 125 DSNKKILKFKNISIHTLEARVFKNNE------EIF-LTSAEYKLLLILIQNKNMVLSRAQ 177 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223 I ++ + + + +N + +I +LR+K+ + P + + R LGY WN Sbjct: 178 ILEKLWDVTYDFINDNTLSVYIKRLREKIEDD-SSKPQYILTVRGLGYK--WN 227 >gi|167647848|ref|YP_001685511.1| two component transcriptional regulator [Caulobacter sp. K31] gi|167350278|gb|ABZ73013.1| two component transcriptional regulator, winged helix family [Caulobacter sp. K31] Length = 223 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 11/170 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +V+E R R P++ +S + + +G DD + KP E++ARV A+ Sbjct: 59 GVEVVETLR--REGDNTPVLFLSALGEVGDRVVGLKAGADDYLVKPYAFPELIARVEALS 116 Query: 117 RRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + + G + + R QG+ L RE ++LE++M + G+ V +T + Sbjct: 117 RRRETGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLL 176 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221 ++ FD + NV++ HIS+LR K+ GFD + + R GY +D Sbjct: 177 EKVWEYHFDP--QTNVIDVHISRLRSKIDK--GFDRAMLQTVRGAGYRLD 222 >gi|56963624|ref|YP_175355.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909867|dbj|BAD64394.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 228 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 17/172 (9%) Query: 47 SAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 S AF G + VL LP++ IRA S+VP+I +S + + F G Sbjct: 35 SGYHAFCEGAYQLVLIDLMLPKMDGFALCEKIRASSEVPIIVVSAKQTDFDKVQSFGLGA 94 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVS----NNRAETGPIRVFSDGRDPEVQGEVFPLPR 151 DD V KP E+ ARV A RR + S +R + + + GR +GE L Sbjct: 95 DDYVTKPFSPLELTARVKAQIRRYERSYPQQEDRLQFIDVEIDIKGRRVFARGEQISLTA 154 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 +E +L +L + G+ K ++++A++ + + V H+ +R KL++ Sbjct: 155 KEFELLLFLANHPGRVFTKEELYAAVWN--GDGFDSRTVTVHVKNVRHKLKD 204 >gi|300855161|ref|YP_003780145.1| putative response regulator [Clostridium ljungdahlii DSM 13528] gi|300435276|gb|ADK15043.1| predicted response regulator [Clostridium ljungdahlii DSM 13528] Length = 217 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 4/149 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P+I ++ S+ + +G DD + KP E+LAR+ + R + N + Sbjct: 72 IPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLRHYNKNTNVINFEDVE 131 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + GE L +E +L +L+ N+ + + ++ I+G +D E +++ Sbjct: 132 INLREMTARKAGEAVELTLKEFELLVFLVQNKNVVLTREKLIEKIWG-YDYVGETRTIDN 190 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221 HI KLRKKL+ K D + + LGY ++ Sbjct: 191 HIQKLRKKLQWK---DKIKTVFKLGYRLE 216 >gi|258541416|ref|YP_003186849.1| PhoB family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632494|dbj|BAH98469.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-01] gi|256635551|dbj|BAI01520.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-03] gi|256638606|dbj|BAI04568.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-07] gi|256641660|dbj|BAI07615.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-22] gi|256644715|dbj|BAI10663.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-26] gi|256647770|dbj|BAI13711.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-32] gi|256650823|dbj|BAI16757.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653814|dbj|BAI19741.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-12] Length = 229 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ R +R + +P++ +S T+ D+G DD + KP + ARV A+ R Sbjct: 63 LEVCRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAMLR 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 RL ++ + + E G + L E R+LE+ M N GK ++ ++ Sbjct: 123 RLPPADKTLRFDTLVMDRVSHKVERSGRLLALGPTEYRLLEFFMLNPGKVFSREELLKHA 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + VE V+ HI +LR+ L D + + R GY++D Sbjct: 183 WE-RSSFVELRTVDVHIRRLRQTLNEGDEQDLIRTVRARGYALD 225 >gi|256379016|ref|YP_003102676.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255923319|gb|ACU38830.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 238 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 17/139 (12%) Query: 77 GISDYPSLQTT--------LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 G+ D P + T + ++G DD + KP + AR++A+ RR + + E Sbjct: 79 GVCDTPVIVATARDDEAEIVRLLNAGADDYLVKPFSSEHLAARLSAVLRRTRKAA--PEP 136 Query: 129 GPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 GP+RV D R+ + G L R+E +L YL A GK V + ++ + ++ L Sbjct: 137 GPMRVGPHLLIDLDRREARLSGRELNLTRKEFDLLAYLAAREGKVVPRAELLANLWNLPG 196 Query: 183 EAVEENVVESHISKLRKKL 201 ++ ++ H+S LR+KL Sbjct: 197 RH-DDQTLDVHLSWLRRKL 214 >gi|229004154|ref|ZP_04161955.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228757015|gb|EEM06259.1| Two-component response regulator [Bacillus mycoides Rock1-4] Length = 210 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 4/144 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + + IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR Sbjct: 49 ISVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 108 Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E G I + R E+ GE L +E +L +L + G+ ++ Q+ + Sbjct: 109 KQEQQEEELQFGSIVINEKSRRIEIDGEPISLTVKEFDLLYFLCGHNGQVFSREQLLEKV 168 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G +D A V++H+ +R KL Sbjct: 169 WG-YDYAGSTRTVDTHVKTMRLKL 191 >gi|165976675|ref|YP_001652268.1| phosphate regulon transcriptional regulatory protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876776|gb|ABY69824.1| phosphate regulon transcriptional regulatory protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 213 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 3/149 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 +Q+P++ ++ S + ++G DD V KP + ++AR+ A+ RR +N+ Sbjct: 58 AQIPILMLTARSSEDDCIVCLNTGADDYVTKPFSPKVLIARIEALLRRTYQNNDIINIDD 117 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + Q + L E ++L + M + K ++ Q+ ++G D VE+ V Sbjct: 118 LILDQNAKRVTFQKKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWG-NDIYVEDRTV 176 Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +S+I +LRK L GF+ V + R GY Sbjct: 177 DSYIRRLRKSL-EPCGFERYVQTVRGSGY 204 >gi|150006575|ref|YP_001301319.1| two-component system response regulator [Bacteroides vulgatus ATCC 8482] gi|254881522|ref|ZP_05254232.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA] gi|294775465|ref|ZP_06740978.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|319642909|ref|ZP_07997545.1| two-component system response regulator [Bacteroides sp. 3_1_40A] gi|149934999|gb|ABR41697.1| two-component system response regulator [Bacteroides vulgatus ATCC 8482] gi|254834315|gb|EET14624.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA] gi|294450706|gb|EFG19193.1| response regulator receiver domain protein [Bacteroides vulgatus PC510] gi|317385457|gb|EFV66400.1| two-component system response regulator [Bacteroides sp. 3_1_40A] Length = 229 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 79/151 (52%), Gaps = 8/151 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G K+ + + +A + +P+I I+ + T+ F+ G DD ++KP RE++ARV A+ Sbjct: 61 GFKMANMLKKNKATASIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVL 120 Query: 117 RRL-----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR K + + + + V + + G L ++E IL L+ N+G+ ++ Sbjct: 121 RRTSPTQGKEAQEQLQYKGLLVDITKKKVSIDGIEISLTKKEFEILLLLLQNKGRVFSRE 180 Query: 172 QIFSAIYGLFDEA-VEENVVESHISKLRKKL 201 I + ++ +E V + ++ +I++LRKK+ Sbjct: 181 DILAKVWQ--EEVYVLDRTIDVNITRLRKKI 209 >gi|315452761|ref|YP_004073031.1| putative two-component regulation system CdrRS, regulator component CdrR [Helicobacter felis ATCC 49179] gi|315131813|emb|CBY82441.1| putative two-component regulation system CdrRS, regulator component CdrR [Helicobacter felis ATCC 49179] Length = 220 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 11/157 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + + H P I IS + + FD G D + KP E+ R+ RL ++ Sbjct: 69 LQTLRQLHITTPTIFISVLSDMTSLKKAFDLGASDYLKKPFDLEELQIRI----ERLLIT 124 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + GP F +G V+G+ F L +E+++LE+ + ++ ++ QI + ++ ++ Sbjct: 125 Q-KVHIGP-DCFYEGGTLNVRGQNFFLTSKEKQLLEFFLRHQNTILSSDQIIANVWS-YE 181 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 V+++ + ++I K LR LG D + + + LGY Sbjct: 182 SGVDDSTLRTYI----KNLRKLLGKDIIQNVKGLGYC 214 >gi|331671522|ref|ZP_08372320.1| transcriptional regulatory protein CreB [Escherichia coli TA280] gi|331071367|gb|EGI42724.1| transcriptional regulatory protein CreB [Escherichia coli TA280] Length = 229 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ V + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 + + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ ++ Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQICWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|301632265|ref|XP_002945211.1| PREDICTED: phosphate regulon sensor protein phoR-like [Xenopus (Silurana) tropicalis] Length = 501 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 70/132 (53%), Gaps = 2/132 (1%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129 S +P++ ++ S++ + D G DD + KP +E+ ARV A+ RR + ++ + G Sbjct: 210 SALPVLILTAADSVEKRVKGLDFGADDYMAKPFSLQELEARVRALTRRGMGATSAIVKHG 269 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P+ G + G++ L RE +LE L+ G+ V+K Q+ + + E V N Sbjct: 270 PLVYDQAGHVVSIDGKMVELSARELGLLEVLLQRVGRLVSKEQLVELLCE-WGEEVSYNA 328 Query: 190 VESHISKLRKKL 201 +E ++ +LRKK+ Sbjct: 329 IEVYVHRLRKKI 340 >gi|299069565|emb|CBJ40837.1| Transcriptional regulatory protein, probable baeR protein, response regulator for mdtABCD and acrD [Ralstonia solanacearum CMR15] Length = 233 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 86/170 (50%), Gaps = 3/170 (1%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G+ LE+ R +RA S +P++ ++ L + G DD + KP RE++AR+ Sbjct: 65 LMLPGKDGLEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARI 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 I RR++ S ++++ +++ + ++G+ L E R+L L G+ +++ Sbjct: 125 KTILRRVQRSGAQSDS-LLQIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRAN 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + IY V + V++H+ LR+K+ G + + S +GY +D Sbjct: 184 LLEQIYD-DHRVVTDRTVDTHVKNLRRKMELVSPGTELIHSVYGVGYRLD 232 >gi|289168019|ref|YP_003446288.1| response regulator [Streptococcus mitis B6] gi|288907586|emb|CBJ22423.1| response regulator [Streptococcus mitis B6] Length = 235 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 12/154 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ + IR S VP+I +S + + + G DD V KP +RE+ ARV A+ RR Sbjct: 61 LEVAKTIRKTSSVPIIMLSAKDTEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120 Query: 119 -LKVSNNRAET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + V N ++ G + + D + GE L RE +L +L ++ G+ + Sbjct: 121 LVSVDNQESDEKKTQPLQFGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ I +LR+K+ + Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 213 >gi|304317076|ref|YP_003852221.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778578|gb|ADL69137.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 228 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 96/202 (47%), Gaps = 13/202 (6%) Query: 27 EGFN-SLEF--EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+N ++E+ E L+ + E+ I L+ G + + IR S +P+I +S Sbjct: 25 EGYNVAIEYSGNEGLRRALDENYDLIILDLMLPGMDGFSVLKEIRKKSSIPVIILSAKDE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR---VFSDGRDP 140 ++ + D G DD + KP E++AR+ R+ N +A T I + D Sbjct: 85 IKDKVMGLDIGADDYLTKPFSIEELMARIRNALRK----NIKANTKKISYDGITMDLSTY 140 Query: 141 EV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 EV G+ L ++E +L+YL+ N + + I ++G ++ E N+V+ +I LR Sbjct: 141 EVLRDGQKIELTKKEFDLLKYLIINAEIVLTRENILENVWG-YNYIGETNIVDVYIRYLR 199 Query: 199 KKLRNKLGFDPVDSKRFLGYSI 220 K+ + + R +GYS+ Sbjct: 200 SKIDEPFSNKLIQTIRGVGYSL 221 >gi|229011292|ref|ZP_04168484.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228749948|gb|EEL99781.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/156 (22%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ ++ + F G DD + KP E++ RV A+ +R +++ +++ Sbjct: 68 LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQITVSQS 127 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + V + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 128 IQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + +L + + R LGY ++ Sbjct: 187 NERTLDVHINRLREKFQEELSKFSIRTIRGLGYRLE 222 >gi|167568406|ref|ZP_02361280.1| Response regulator [Burkholderia oklahomensis C6786] Length = 221 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 10/170 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + L R +R HS +I ++ + ++ DD + KPI RE+LARV A+ RR + Sbjct: 46 ISLARELREHSTAGIIFVTQRDGDLDRVLGLETAGDDYITKPIRLRELLARVRALLRRQR 105 Query: 121 VSNNRAETGPIRVFS----DGRDPEVQ---GEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + A + F D R E+ G V PL RE +L L+ RG + + + Sbjct: 106 LYREIAPVDTVLTFDRWLIDLRRRELALSGGAVLPLTPREFDLLAALVMVRGTTLTREYL 165 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221 + + A + V++ I++LR+K+ + G P+ + +GY +D Sbjct: 166 LEVVSK-RERATDSRTVDTLIARLRRKMSDDAGGMRCPIGTVAGIGYRLD 214 >gi|172064936|ref|YP_001815648.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997178|gb|ACB68095.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 266 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 97/191 (50%), Gaps = 17/191 (8%) Query: 22 DGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGIS 79 +G ++ F+S L+ +++L S D++ ++ L G G+K+L+ R R+ S +P+I + Sbjct: 31 EGYHIDAFHSGLDAQQFL-SEQWADLAILDWDLPGVSGDKLLQKIRS-RSQSIMPVIFQT 88 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD--- 136 + + + D+G DD + KP + +LAR+ A+ RR N + ++F D Sbjct: 89 VHSAESDIVRILDAGADDYLVKPYDRQVLLARMRALLRRFAPMNVQGR----KMFVDDEC 144 Query: 137 -----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 R V G L +E IL +L + G V + + S ++G +D AV+ V+ Sbjct: 145 ALDQQARSLVVAGVAHKLGTKEFDILWHLARHTGAVVLRQDLMSVVWG-WDAAVQSRSVD 203 Query: 192 SHISKLRKKLR 202 ++S+LR L+ Sbjct: 204 MYVSRLRASLK 214 >gi|114797342|ref|YP_762221.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] gi|114737516|gb|ABI75641.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] Length = 228 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 96/209 (45%), Gaps = 19/209 (9%) Query: 11 VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70 + DG+ A+ G EE L+ +A E V + + G E+ R +R Sbjct: 26 LTDGFTAMVAASG-----------EEALRKAAEERVDLVILDVDMPGMNGREVCRQLREK 74 Query: 71 S-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ET 128 +VP+I ++ T+ ++G +D V KP +LARV + R + + + + Sbjct: 75 GIRVPVIMLTGRSGESDTVAGLEAGANDYVAKPFSFAVLLARVRSQLRSFEQTEDATFDI 134 Query: 129 GPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 GP + +G L +E IL+YL GK VA+ + S ++G ++ AV Sbjct: 135 GPYEFRPSMKVLRTKEGRRIRLTEKETEILKYLYRAGGKSVARETLLSEVWG-YNAAVTT 193 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + +E+HI +LR+K+ DP +++ L Sbjct: 194 HTLETHIYRLRQKVEP----DPSNAQLLL 218 >gi|71842271|ref|YP_277359.1| Ycf27 [Emiliania huxleyi] gi|60101514|gb|AAX13858.1| ompR [Emiliania huxleyi] Length = 239 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 21/149 (14%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118 +R S VP+I ++ + + + G DD V KP + +E+ ARV ++ RR Sbjct: 73 LRKKSNVPIIMLTARGDISDRVMGLEFGADDYVIKPFYPKELEARVRSLLRRSEKTSNYS 132 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ N T +VF D + G F L LE L+ N G+R+++ I Sbjct: 133 SNKYLFQIGNLTINTQKQQVFRDNARVRLTGIEFSL-------LELLITNAGERLSRAYI 185 Query: 174 FSAIYGLFDE-AVEENVVESHISKLRKKL 201 ++G E ++ VV+ HIS+LR KL Sbjct: 186 LDTVWGYTPERYLDTRVVDVHISRLRSKL 214 >gi|309809585|ref|ZP_07703442.1| subtilin biosynthesis regulatory protein SpaR [Lactobacillus iners SPIN 2503V10-D] gi|308170066|gb|EFO72102.1| subtilin biosynthesis regulatory protein SpaR [Lactobacillus iners SPIN 2503V10-D] Length = 219 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 5/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA P++ ++ + ++ G DD + KP E+LAR+ A RR K + + Sbjct: 66 IRAKVDCPILFLTAKTMEEDIVEGLLIGGDDYITKPFGTAELLARIEAHLRREKRERHTS 125 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 G IR + V E L + E +I E L +G+ ++ QI+ I+G FD Sbjct: 126 LNLGGIRFDLSSNEVFVGDEKVHLTKSEYQISELLAKRKGQVFSREQIYELIFG-FDGIG 184 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + + + HI +R K + K +P+++ +GY WN Sbjct: 185 DASAISEHIKNIRAKFQ-KYDENPIETVWGIGYK--WN 219 >gi|238753858|ref|ZP_04615218.1| Transcriptional regulatory protein baeR [Yersinia ruckeri ATCC 29473] gi|238707846|gb|EEQ00204.1| Transcriptional regulatory protein baeR [Yersinia ruckeri ATCC 29473] Length = 239 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 15/179 (8%) Query: 36 EWLQSSA------REDVSAIEAF-LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88 +WL + A R+ AI L+ G + + R IR S VP++ ++ L Sbjct: 39 QWLVNGAEVVALVRQSPPAIILLDLMLPGSNGISICREIRQFSDVPIVMVTAKTEEIDRL 98 Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAETGPIRVFSDGRDPEVQG 144 + G DD + KP RE++ARV I RR V +RA P+++ G Sbjct: 99 LGLEIGADDYICKPYSPREVVARVKTILRRCYRPRDVPTDRA---PLQIDESRFHASYHG 155 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 L E R+L+ L G+ + Q+ + +Y + V + ++SHI LR+KL + Sbjct: 156 NTLDLTPAEFRLLKTLAMQPGQVFTREQLLNNLYDDY-RVVTDRTIDSHIKNLRRKLES 213 >gi|256390113|ref|YP_003111677.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356339|gb|ACU69836.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 254 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 35/221 (15%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL------------ELPRIIRAHSQVPLIG 77 +SLEFE + +A + +A+ G+ + VL R+ A +P++ Sbjct: 31 SSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDVLMPGMDGLTACRRLRTADPTLPVLM 90 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP------- 130 ++ + D+G DD + KP E+LARV A+ RR ++ AE+GP Sbjct: 91 LTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRRGALTGEGAESGPGALSRDD 150 Query: 131 -------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 +R+ + R+ G + L R E +LE +++ + + + QI A++G FD Sbjct: 151 HVLEYEDLRMDTLTREVTRAGRLIDLTRTEYLLLEMFLSHPRQALTREQILRAVWG-FDF 209 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSI 220 N ++ ++ +RKK FD V + R +GY++ Sbjct: 210 EPASNSLDVYVMYVRKKTE----FDDLPRLVQTVRGVGYAL 246 >gi|198276756|ref|ZP_03209287.1| hypothetical protein BACPLE_02958 [Bacteroides plebeius DSM 17135] gi|198270281|gb|EDY94551.1| hypothetical protein BACPLE_02958 [Bacteroides plebeius DSM 17135] Length = 231 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 83/166 (50%), Gaps = 10/166 (6%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 EL + IR A+ +P++ ++ S LD FD+G DD + KP RE+ AR+ + +R Sbjct: 61 FELCKEIRKANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRK 120 Query: 120 K------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 V+ + +++ ++ R+ QG + L +E +L Y++ N + +++ +I Sbjct: 121 AEATVSVVAPEKLTYKDLQIDTNRREVMRQGNLIRLSPKEYNLLTYMVQNAERVISRIEI 180 Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ FD N ++ +I+ LRKK+ + +K +G+ Sbjct: 181 AEKVWNTHFDTGT--NFIDVYINYLRKKIDKDFETKLIHTKPGIGF 224 >gi|170761766|ref|YP_001788740.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum A3 str. Loch Maree] gi|169408755|gb|ACA57166.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum A3 str. Loch Maree] Length = 226 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 83/166 (50%), Gaps = 5/166 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR S VP+I ++ + + D G +D + KP E+LAR+ +Y R K Sbjct: 63 IEVCRRIRQFSCVPIIMLTAKSDVSDKVLGLDVGANDYLTKPFAIEELLARI-RVYEREK 121 Query: 121 VSNNRAETGPIR-VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++ + ++ + D + +V G L ++E +L+ L+ N+ + + ++ + Sbjct: 122 LVKSKFDEVKVKDIVMDNKTHQVWRSGREIELTKKEYDLLQKLLINKNIVLTRERLIEEV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G +D + NVV+ I LR K+ N + + R +GY I N Sbjct: 182 WG-YDYVGDTNVVDVFIRYLRSKIDNGSKEKLITTIRGVGYVIKDN 226 >gi|164520380|gb|ABY60245.1| PhoP [Listeria monocytogenes] Length = 233 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 12/119 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLK--------VSNNRAET---GPIRVFSDGRDPEV 142 G DD + KP RE++AR+ AI RR + ++ + T G +++ D + + Sbjct: 92 GADDYMTKPFSPREVVARIKAILRRTEGKAEIIEDITEDSEATILIGDLKILPDSYEVYL 151 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR K+ Sbjct: 152 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 209 >gi|164520366|gb|ABY60238.1| PhoP [Listeria monocytogenes] gi|164520368|gb|ABY60239.1| PhoP [Listeria monocytogenes] gi|164520370|gb|ABY60240.1| PhoP [Listeria monocytogenes] gi|164520374|gb|ABY60242.1| PhoP [Listeria monocytogenes] gi|164520376|gb|ABY60243.1| PhoP [Listeria monocytogenes] gi|164520382|gb|ABY60246.1| PhoP [Listeria monocytogenes] gi|164520384|gb|ABY60247.1| PhoP [Listeria monocytogenes] gi|164520388|gb|ABY60249.1| PhoP [Listeria monocytogenes] gi|164520394|gb|ABY60252.1| PhoP [Listeria monocytogenes] gi|164520398|gb|ABY60254.1| PhoP [Listeria monocytogenes] gi|164520400|gb|ABY60255.1| PhoP [Listeria monocytogenes] gi|164520402|gb|ABY60256.1| PhoP [Listeria monocytogenes] gi|164520406|gb|ABY60258.1| PhoP [Listeria monocytogenes] gi|164520408|gb|ABY60259.1| PhoP [Listeria monocytogenes] gi|164520414|gb|ABY60262.1| PhoP [Listeria monocytogenes] gi|164520416|gb|ABY60263.1| PhoP [Listeria monocytogenes] gi|164520418|gb|ABY60264.1| PhoP [Listeria monocytogenes] gi|164520422|gb|ABY60266.1| PhoP [Listeria monocytogenes] gi|164520434|gb|ABY60272.1| PhoP [Listeria monocytogenes] gi|164520440|gb|ABY60275.1| PhoP [Listeria monocytogenes] Length = 233 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 12/119 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRL--------KVSNNRAET---GPIRVFSDGRDPEV 142 G DD + KP RE++AR+ AI RR +++ + T G +++ D + + Sbjct: 92 GADDYMTKPFSPREVVARIKAILRRTEGKAEIIEEITEDSEATILIGDLKILPDSYEVYL 151 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR K+ Sbjct: 152 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 209 >gi|152967563|ref|YP_001363347.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151362080|gb|ABS05083.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 239 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/134 (35%), Positives = 71/134 (52%), Gaps = 11/134 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV------F 147 G DD V KP E++AR+ A+ RR + +TG + VF D E EV Sbjct: 103 GGDDYVTKPFSLEEVVARIRAVLRRTGGVDG-PDTGRL-VFHDLELEEDSHEVRRAGREV 160 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E ++L YLM N + ++K QI ++ +D E +VES+IS LR+KL + G Sbjct: 161 ELSPTEFKLLRYLMLNPNRVLSKAQILDHVWD-YDFNGEAGIVESYISYLRRKLDTE-GL 218 Query: 208 DP-VDSKRFLGYSI 220 +P + +KR +GY + Sbjct: 219 EPLIHTKRGVGYVL 232 >gi|319936032|ref|ZP_08010455.1| vanr protein [Coprobacillus sp. 29_1] gi|319808982|gb|EFW05489.1| vanr protein [Coprobacillus sp. 29_1] Length = 226 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 5/146 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR + P+I ++ + + G DD V KP E++ARV A RR K Sbjct: 60 LEICQTIRENYNFPIIMLTAKETEIDKITGLTIGADDYVTKPFRPLELMARVKAQLRRYK 119 Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N G + + D + + L E IL L ++GK V QIF Sbjct: 120 TMTPKEEKNMVTIGALTIDQDNHQCILNNQTLSLTPTEFSILWLLCKHKGKVVTVDQIFQ 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 ++G + + HI LR+K+ Sbjct: 180 ELWGEKYYTNSSSSIMVHIRHLREKM 205 >gi|317406334|gb|EFV86566.1| hypothetical protein HMPREF0005_05179 [Achromobacter xylosoxidans C54] Length = 222 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 16/171 (9%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G VL+ R + P++ I+ L + D+G DD + KP E+LAR+ A Sbjct: 57 GSGLAVLKHLRA--RYDATPVLIITARDRLSERVQGLDAGADDYIVKPFQLDELLARLRA 114 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVA 169 + RR ++ + +R DP + G L E R L LM G+ V+ Sbjct: 115 VVRR----SSNSVVSVLRCRDVQLDPARRVVTRAGAEVVLSASEYRTLLALMERAGQTVS 170 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + Q+ +A+YG +E N V ++ +LR+ KLG D V + LGY I Sbjct: 171 REQLEAAVYG-GSGTIESNTVAVYVHQLRR----KLGDDLVATVHGLGYRI 216 >gi|310824267|ref|YP_003956625.1| winged helix family two component transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309397339|gb|ADO74798.1| Two component transcriptional regulator, winged helix family [Stigmatella aurantiaca DW4/3-1] Length = 241 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 7/171 (4%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 E L + R + L+ G LE+ R +R S VP+I ++ + ++G Sbjct: 47 EGLAEAGRHAYDVLLLDLMLPGRDGLEVCRELRTRSDVPIIMVTARGEEIDRVLGLETGA 106 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLP 150 DD + KP RE+LAR+ A RR + N P+ V DP + G+ L Sbjct: 107 DDYLPKPYSSRELLARIRAQVRRAR-GNAGPSLQPLNVGRLQMDPRSLTAVLNGKTLSLT 165 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E +L L G+ +++ Q+ I G DE + + ++ HI +LR+KL Sbjct: 166 SYEFNLLRVLAERAGRVLSREQLLDLIKGSADEVFDRS-IDVHIFRLRQKL 215 >gi|331645097|ref|ZP_08346208.1| transcriptional regulatory protein CreB [Escherichia coli M605] gi|330909844|gb|EGH38354.1| two-component response regulator CreB [Escherichia coli AA86] gi|331045854|gb|EGI17973.1| transcriptional regulatory protein CreB [Escherichia coli M605] Length = 229 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G +E F E + AR+ V + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFGVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 + + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ ++ Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|209544352|ref|YP_002276581.1| winged helix family two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209532029|gb|ACI51966.1| two component transcriptional regulator, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 232 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 6/131 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 G DD + KP E+LAR+ A+ RR + + +NR G + + R G L Sbjct: 101 LSDGADDYIVKPYDFDELLARLDAVSRRYVALVDNRLALGEVEIDLSRRRLSRLGAEVDL 160 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 RE ++E L G ++ QI A+YGL +E +E N +E IS++RK K+G Sbjct: 161 TAREWAVIELLARRAGAICSREQIEDALYGLGEE-IESNAIEVFISRVRK----KVGAGL 215 Query: 210 VDSKRFLGYSI 220 + + R GY + Sbjct: 216 IRTVRGRGYRL 226 >gi|148997681|ref|ZP_01825245.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|147756180|gb|EDK63222.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] Length = 225 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 76/157 (48%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V K + +LA+V + RR Sbjct: 67 IRKISKVPIMFLSSRDQAMDIVMAINMGADDFVTKLFDQQVLLAKVQGLLRRSYEFGRDE 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + + D QG+V L + E +IL L + G VA+ + ++ D Sbjct: 127 SLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQILRVLFEHAGNIVARDDLMRELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGYGL 222 >gi|46908673|ref|YP_015062.1| DNA-binding response regulator PhoP [Listeria monocytogenes serotype 4b str. F2365] gi|47092787|ref|ZP_00230572.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b H7858] gi|290892664|ref|ZP_06555656.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J2-071] gi|293596309|ref|ZP_05230378.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J1-194] gi|293596921|ref|ZP_05265617.2| DNA-binding response regulator PhoP [Listeria monocytogenes HPB2262] gi|46881945|gb|AAT05239.1| DNA-binding response regulator PhoP [Listeria monocytogenes serotype 4b str. F2365] gi|47018875|gb|EAL09623.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b H7858] gi|290557724|gb|EFD91246.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J2-071] gi|293583815|gb|EFF95847.1| DNA-binding response regulator PhoP [Listeria monocytogenes HPB2262] gi|293594620|gb|EFG02381.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J1-194] Length = 240 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 12/119 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRL--------KVSNNRAET---GPIRVFSDGRDPEV 142 G DD + KP RE++AR+ AI RR +++ + T G +++ D + + Sbjct: 99 GADDYMTKPFSPREVVARIKAILRRTEGKAEIIEEITEDSEATILIGDLKILPDSYEVYL 158 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR K+ Sbjct: 159 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 216 >gi|172059033|ref|YP_001815493.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991554|gb|ACB62476.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 236 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 9/151 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +E+ R +R S+VP+I ++ S T+ + G +D V KP RE+LARV A R Sbjct: 63 MEVCREVRKTSKVPIIMLTAKDSEIDTVLGLELGANDYVTKPFSSRELLARVKAHLRNVN 122 Query: 119 -LKVSNNRAETGPIRV---FSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ + A GP++V + D V Q + L +RE +L YL N G+ + + Sbjct: 123 TVEAAPANAGPGPLKVGELYIDTNSHTVTRQDQKIELTQREFELLHYLAKNIGQVMTREH 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ + +LR+K+ + Sbjct: 183 LLQTVWG-YDYFGDVRTVDVTVRRLREKVED 212 >gi|322806654|emb|CBZ04223.1| DNA-binding response regulator [Clostridium botulinum H04402 065] Length = 226 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 7/165 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R S +P+I ++ ++ + D+G DD + KP E+LAR+ +++ + Sbjct: 61 LEVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAFKK-R 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQIFS 175 + R + IR D ++ L RE +L+ LM N+ + ++ + Sbjct: 120 IVTVRKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILME 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G +D E NV++ +I LR K+ + + + R +GY I Sbjct: 180 KVCG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223 >gi|253682540|ref|ZP_04863337.1| transcriptional regulatory protein ResD [Clostridium botulinum D str. 1873] gi|253562252|gb|EES91704.1| transcriptional regulatory protein ResD [Clostridium botulinum D str. 1873] Length = 223 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/166 (23%), Positives = 86/166 (51%), Gaps = 7/166 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 ++ + IR S+VP+I ++ + L ++ G DD V KP + ++A+V A+ +R Sbjct: 61 KVCKSIRDLSKVPIIMLTAKGEEEDKLFGYELGADDYVTKPFSPKVLVAKVKALLKRSVI 120 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +K N +++ + ++ G+V L +E +L + + N+ +++ ++ + Sbjct: 121 DIKEEKNIINYNGLQINEPSNEVKINGKVITLSPKEYDLLLFFVKNKDIVLSRDKLLDRV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G FD V++H+ +LR+KL++K + + + R GY + N Sbjct: 181 WG-FDYDGGLRTVDTHVKRLREKLKDKSNY--IVTVRGKGYKFEVN 223 >gi|238923307|ref|YP_002936822.1| response regulator [Eubacterium rectale ATCC 33656] gi|238874981|gb|ACR74688.1| response regulator [Eubacterium rectale ATCC 33656] Length = 218 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 1/129 (0%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P+I ++ +L L SG +D + KP E+LARV + RR + I Sbjct: 73 IPVIFLTAKATLDDRLRGLTSGAEDYMVKPFEIVELLARVNIVLRRYNKMEQQLTFKDIA 132 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + + ++ G+ L +E +LE LM N+ + + +I+ I+G + +VE ++ Sbjct: 133 IDTKNQNVSKAGKHIELTPKEFELLELLMRNKNITLFREKIYEEIWG-SEYSVESRTLDL 191 Query: 193 HISKLRKKL 201 HI +LRKKL Sbjct: 192 HIQRLRKKL 200 >gi|229589367|ref|YP_002871486.1| putative two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229361233|emb|CAY48097.1| putative two-component system, response regulator [Pseudomonas fluorescens SBW25] Length = 239 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 21/203 (10%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74 Y+A FG + ++ Q+ E + L+ GE L L R +R+ S +P Sbjct: 28 YLARFGILATGVTDGTTMR-----QAMQAETFDVVVLDLMLPGEDGLSLCRWLRSESDIP 82 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134 ++ ++ + + G DD ++KP RE++AR+ I RR V ++R E F Sbjct: 83 ILMLTARCEPTDRIIGLELGADDYMSKPFEPRELVARIQTILRR--VRDDRTEQRANIRF 140 Query: 135 SDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAVE 186 + R V G V PL E R+L ++ R +RV ++ Q+ A G EA + Sbjct: 141 DNWRLNSVLRQLVADDGLVVPLSNAEFRLL-WVFIERPRRVLSREQLLDAARGRSIEAFD 199 Query: 187 ENVVESHISKLRKKLRNKLGFDP 209 + I L +LR KLG DP Sbjct: 200 RS-----IDLLVSRLRQKLGDDP 217 >gi|117617885|ref|YP_858673.1| transcriptional regulatory protein CreB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559292|gb|ABK36240.1| transcriptional regulatory protein CreB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 224 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 19/226 (8%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-- 61 L++D A + D I DG +E F + Q R + + + ++ G + Sbjct: 8 LVEDEASIADTLIYALQTDGFEVEWFMLGQ-----QLLTRLEQTRPDFLILDVGLPDISG 62 Query: 62 -ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + +R + +PL+ ++ L + G DD V KP RE+ ARV I RR + Sbjct: 63 FELCKQVRVLTDIPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREVCARVRVILRRSQ 122 Query: 121 VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + V + R +G+ L R E +L+ LM G+ ++ Q+ ++ Sbjct: 123 PVA--PQPSALLVLDEERARIHFRGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWQ 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221 +E+++ V++HI +R KLR DP + + R LGYS++ Sbjct: 181 DAEESLDRT-VDTHIKTIRAKLREH---DPEANLILTHRGLGYSLE 222 >gi|78223889|ref|YP_385636.1| two component transcriptional regulator [Geobacter metallireducens GS-15] gi|78195144|gb|ABB32911.1| two component transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 226 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 99/218 (45%), Gaps = 20/218 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIGK-GEKVLELPRI 66 L K+GY + DG+S L + R+ D+ ++ L G G +V ++ + Sbjct: 21 LEKEGYRTIAAPDGIS-----------GLDEAQRQVPDLILLDLMLPGMMGTEVCKILKK 69 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123 +++P+I ++ + F+ G DD V KP RE+L R+ A+ RR + S Sbjct: 70 SEKTAKIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRIKAVLRRSLPDEPSG 129 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 GPI + D V GE L E ++L L G+ ++ + ++G ++ Sbjct: 130 KTMRIGPIAIDPDRHTVAVAGEEIVLTTTEFKLLLNLAERLGRVQSRDLLLKNVWG-YNY 188 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V++HI++LR KL D + + R GY ++ Sbjct: 189 VGDTRTVDTHITRLRTKLGP--AGDLIKTVRGFGYKME 224 >gi|28198188|ref|NP_778502.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|182680822|ref|YP_001828982.1| two component transcriptional regulator [Xylella fastidiosa M23] gi|28056258|gb|AAO28151.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|182630932|gb|ACB91708.1| two component transcriptional regulator, winged helix family [Xylella fastidiosa M23] gi|307579290|gb|ADN63259.1| two component transcriptional regulator [Xylella fastidiosa subsp. fastidiosa GB514] Length = 231 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 70/132 (53%), Gaps = 6/132 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ ++ +++ + + G DD ++KP RE AR + RR + N +E I Sbjct: 73 TPVLILTARDAIEDRVYTLNVGADDYLSKPFDFREFEARCRVLLRRNR--GNASEVVRIG 130 Query: 133 VF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 F + + GE LP RE R+LE L+A G+ V K +I ++++ FD+ N Sbjct: 131 GFEFDNAAHRICLNGEPIKLPNREYRLLEILIARLGQIVGKDEIGNSLFN-FDDNAGPNA 189 Query: 190 VESHISKLRKKL 201 +E ++++LR+KL Sbjct: 190 IELYVARLRRKL 201 >gi|162147449|ref|YP_001601910.1| two component response regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161786026|emb|CAP55608.1| putative two component response regulator [Gluconacetobacter diazotrophicus PAl 5] Length = 277 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 4/151 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPI 131 P+I I+ + + G DD V I E+LAR+ AI RR ++ + G + Sbjct: 85 TPVIIIARDTTPPAIAEVLSVGADDCVPASIDPTELLARLRAIVRRAGGHDSLTLQIGRL 144 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V + R+ + G+ PL RRE ++E L + + ++K + ++Y E V++ Sbjct: 145 TVNVNQREVHIDGKPVPLTRREYDVVELLALRKNQALSKESVLDSLYAGQHEP-SGKVID 203 Query: 192 SHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 I K+RKK+R LG +P+ ++ +GY ++ Sbjct: 204 VMICKIRKKMRG-LGIEEPLTTQWGIGYRLN 233 >gi|114777962|ref|ZP_01452876.1| Two comoponent transcriptional regulator, winged helix family protein [Mariprofundus ferrooxydans PV-1] gi|114551749|gb|EAU54301.1| Two comoponent transcriptional regulator, winged helix family protein [Mariprofundus ferrooxydans PV-1] Length = 227 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 34/218 (15%) Query: 2 FVLIDD---------RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52 +LIDD R L +G+ DG+S G L+ +++ +++ ++ Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGIS--GLARLKQDQF-------ELAVVDIM 53 Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 + GK ++L R +R S +P+I ++ + + G DD + KP + RE+ AR+ Sbjct: 54 MPGKNG--MDLLRELRQSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARI 111 Query: 113 AAIYRRLKV---SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 A+ RR S+++ ET G + R GE L E IL LM + G+ Sbjct: 112 RAVLRRSDTQQESDDKQETRFGSLEWHPQSRTITEHGEPVDLTATEYNILTVLMQHAGEV 171 Query: 168 VAKTQIFSAI----YGLFDEAVEENVVESHISKLRKKL 201 V+K ++ A +G FD ++ HI LRKK+ Sbjct: 172 VSKYELSQAALGKRHGPFD-----RTLDVHIGHLRKKI 204 >gi|70727234|ref|YP_254150.1| hypothetical protein SH2235 [Staphylococcus haemolyticus JCSC1435] gi|123659511|sp|Q4L481|GRAR_STAHJ RecName: Full=Response regulator protein graR; AltName: Full=Glycopeptide resistance-associated protein R gi|68447960|dbj|BAE05544.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 224 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 9/160 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---V 121 R IR S VP++ +S + + + G DD + KP H ++A++ AIYRR+ Sbjct: 64 RKIRQVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFHTNVLIAKLQAIYRRVYEFGA 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R + +D +G+ V L + E ILE L+ + + V + + +A++ Sbjct: 124 EEKRTLNWQDALVDLSKDSIQKGDSVIYLSKTEMIILEMLIQKQNQIVTRDTLITALWD- 182 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 DEA V +N + ++++LRKKL + +G D +++K GY Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKLSD-IGMDTQIETKVGKGY 220 >gi|330902745|gb|EGH33758.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 178 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 80/155 (51%), Gaps = 11/155 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123 R +R P++ ++ ++ D+G DD V KP+H R +LAR+ A+ RR + Sbjct: 2 RSVRDRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARIKALLRRSEAPQV 61 Query: 124 -----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R GP+ V + R+ ++ + L E +L L+AN G+ +++ +IF+A+ Sbjct: 62 PAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSREEIFTALR 121 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 G+ + ++ ++ IS++R K+G DP+ + Sbjct: 122 GVGYDG-QDRSIDVRISRIRP----KIGDDPIHPR 151 >gi|254785020|ref|YP_003072448.1| alkaline phosphatase synthesis PhoB family transcriptional regulator [Teredinibacter turnerae T7901] gi|237686037|gb|ACR13301.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Teredinibacter turnerae T7901] Length = 233 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 14/122 (11%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR-----VFSD---GRDPEV 142 + G DD + KP RE+ ARV A+ RR V+ N ET P VF D ++ V Sbjct: 93 LEVGADDYLTKPFSVRELQARVRALLRR--VAFNTQETNPTAGPDQLVFGDLSINKNKHV 150 Query: 143 ---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 E L +E +L YL ++ G+ ++ Q+ SA++G + + E+ V SHI++LR Sbjct: 151 VTLADEEIKLTAKEFDLLLYLASSPGQVFSRDQLLSAVWG-YHHSGYEHTVNSHINRLRA 209 Query: 200 KL 201 KL Sbjct: 210 KL 211 >gi|228996503|ref|ZP_04156142.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|228763135|gb|EEM12043.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 210 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 4/138 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP+I ++ ++ G DD + KP E++AR+ A+ RR + Sbjct: 55 IRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQE 114 Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E G I + R E+ GE L +E +L +L + G+ ++ Q+ ++G +D Sbjct: 115 EELQFGSIVINEKSRRIEIDGEPISLTVKEFDLLYFLCGHNGQVFSREQLLEKVWG-YDY 173 Query: 184 AVEENVVESHISKLRKKL 201 A V++H+ +R KL Sbjct: 174 AGSTRTVDTHVKTMRLKL 191 >gi|218516673|ref|ZP_03513513.1| probable two-component response regulator protein [Rhizobium etli 8C-3] Length = 225 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 19/170 (11%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +RA +Q ++ ++ + + + D G DD + KP E ARV + RR Sbjct: 60 LDVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDISEFEARVRVLLRR- 118 Query: 120 KVSNNRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + A G R FS G P +P RE +LE L GK VAK Sbjct: 119 QAGLRSATVGFGGISFDLTSRTFSAGSTP------LDIPARELGLLEILFMRAGKVVAKE 172 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I ++ FD+ + N +E ++S+LRK+L + G V + R +GY +D Sbjct: 173 AIIQSLTA-FDDDISSNAIEQYVSRLRKRL-SPHGL-TVKTARGIGYYLD 219 >gi|62180703|ref|YP_217120.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224583379|ref|YP_002637177.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62128336|gb|AAX66039.1| response regulator in two-component regulatory system with BaeS (OmpR family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224467906|gb|ACN45736.1| putative two-component system response regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715177|gb|EFZ06748.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 240 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K + AE+ P+ + G+ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|42783708|ref|NP_980955.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42739637|gb|AAS43563.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 230 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 27/225 (12%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + L+K+G+ DG EG N+ +LQ S D+ ++ + LE+ RII Sbjct: 20 KYLIKEGFQVTIASDGE--EGVNT-----YLQGSF--DLIILDIMM--PKLDGLEVVRII 68 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRA 126 R S VP++ +S + G DD + KP E+ ARV A I R K S Sbjct: 69 REKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKYSATET 128 Query: 127 ETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 I++ DP E G+ L +E IL+ + N+ + K QI++ I+ Sbjct: 129 TEKMIQIGDLTLDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTLIWN-E 187 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221 + ++NV+ H+ +LR+K+ + DP + + +GY +D Sbjct: 188 EYYGDDNVINVHMRRLREKIES----DPSNPEYIKTLWGIGYKLD 228 >gi|16132215|ref|NP_418815.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli str. K-12 substr. MG1655] gi|89111106|ref|AP_004886.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli str. K-12 substr. W3110] gi|170083784|ref|YP_001733104.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli str. K-12 substr. DH10B] gi|238903485|ref|YP_002929281.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli BW2952] gi|312970092|ref|ZP_07784274.1| transcriptional regulatory protein creB [Escherichia coli 1827-70] gi|117433|sp|P08368|CREB_ECOLI RecName: Full=Transcriptional regulatory protein CreB gi|147250|gb|AAA24374.1| 28 kd protein [Escherichia coli] gi|537238|gb|AAA97294.1| creB [Escherichia coli str. K-12 substr. MG1655] gi|1790860|gb|AAC77351.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli str. K-12 substr. MG1655] gi|85677137|dbj|BAE78387.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli str. K12 substr. W3110] gi|169891619|gb|ACB05326.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli str. K-12 substr. DH10B] gi|238860860|gb|ACR62858.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli BW2952] gi|260450790|gb|ACX41212.1| two component transcriptional regulator, winged helix family [Escherichia coli DH1] gi|310337590|gb|EFQ02701.1| transcriptional regulatory protein creB [Escherichia coli 1827-70] gi|315138952|dbj|BAJ46111.1| DNA-binding response regulator CreB [Escherichia coli DH1] Length = 229 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ V + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARKQVPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 + + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ ++ Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLALTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|75758856|ref|ZP_00738968.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899977|ref|YP_002448388.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228903325|ref|ZP_04067456.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|74493622|gb|EAO56726.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542108|gb|ACK94502.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228856286|gb|EEN00815.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 230 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 8/150 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S+VP+I ++ TL F+ G DD V KP +LAR + K S Sbjct: 67 RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKASKK 126 Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E I+V R V L E IL Y M N+G + + Q+ S I Sbjct: 127 PLENEDDTLSIHGIQVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLISRI 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207 +G ++ A ++ V SHI LR KL K + Sbjct: 187 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 215 >gi|332185092|ref|ZP_08386841.1| response regulator [Sphingomonas sp. S17] gi|332014816|gb|EGI56872.1| response regulator [Sphingomonas sp. S17] Length = 235 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 13/170 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LEL R +R SQ+P+I ++ G DD + KP R ++AR+ AI RR + Sbjct: 62 LELLRRLREKSQIPVIFLTSKDDELDEALGLAMGADDYIAKPFSQRLLIARIRAILRRSE 121 Query: 121 VSNNRAET------GPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVA 169 S+ T GP+ DP +GE L E ILE L G Sbjct: 122 GSSQTPGTPAAEVQGPLTRGQLAMDPARHKVTWKGEPVTLTVTEFLILETLAQRPGIVRT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 + Q+ A Y D V++ ++SHI +LR+K R FD +++ GY Sbjct: 182 RNQLMDAAYQ-DDIYVDDRTIDSHIKRLRRKFRQVDPEFDAIETLYGAGY 230 >gi|332284405|ref|YP_004416316.1| two-component transcriptional regulator [Pusillimonas sp. T7-7] gi|330428358|gb|AEC19692.1| two-component transcriptional regulator [Pusillimonas sp. T7-7] Length = 235 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 4/152 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 + P+I +S +L + SG DD + KP E+L R A+ RR + SN Sbjct: 75 KTPVIVLSALTALDERVRGLKSGGDDYLTKPFALIELLTRAEALVRRSQSNASNRVLTVA 134 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 +R+ G+ L RE R+L Y+M + + + + + A++G + + NV Sbjct: 135 DLRLDLTSSKATRSGKPLSLQPRETRLLTYMMMHPDQVLTRAMLLGAVWG-YQFNPQTNV 193 Query: 190 VESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +++ +S+LR+K+ ++ G + + R +GY++ Sbjct: 194 IDAAVSRLRQKVDGDQQGPALIHTVRGVGYTL 225 >gi|326789530|ref|YP_004307351.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326540294|gb|ADZ82153.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 225 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 6/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVS 122 IR S+VP+I +S + + G DD + KP + A++ A+ RR ++ Sbjct: 67 IRKKSKVPIIFLSSASDSMNIVMAMNMGADDFITKPFELEVLAAKLQAMLRRTYDFIEEC 126 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 G I SD V L + E +L+ L N+GK V++ +I ++ D Sbjct: 127 TEIEHKGAILSLSDAT-LVVGSHKIKLTKNEFLMLQILFENKGKVVSREEIMKKLWDT-D 184 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++N + ++ ++RKKL D + +K+ +GY ++ Sbjct: 185 YFIDDNTLTVNMGRVRKKLEEAGLVDFITTKKGMGYILE 223 >gi|190893427|ref|YP_001979969.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190698706|gb|ACE92791.1| probable two-component response regulator protein [Rhizobium etli CIAT 652] Length = 225 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 80/170 (47%), Gaps = 19/170 (11%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +RA +Q ++ ++ + + + D G DD + KP E ARV + RR Sbjct: 60 LDVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDISEFEARVRVLLRR- 118 Query: 120 KVSNNRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + A G R FS G P +P RE +LE L GK VAK Sbjct: 119 QAGLRSATVGFGGISFDLTSRTFSAGSTP------LDIPARELGLLEILFMRAGKVVAKE 172 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I ++ FD+ + N +E ++S+LRK+L + G V + R +GY +D Sbjct: 173 AIIQSLTA-FDDDISSNAIEQYVSRLRKRL-SPHGL-TVKTARGIGYYLD 219 >gi|164520430|gb|ABY60270.1| PhoP [Listeria monocytogenes] Length = 233 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 12/119 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRL--------KVSNNRAET---GPIRVFSDGRDPEV 142 G DD + KP RE++AR+ AI RR +++ + T G +++ D + + Sbjct: 92 GADDYMTKPFSPREVVARIKAILRRTEGKAEIIEEITEDSEATILIGDLKILPDSYEVYL 151 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR K+ Sbjct: 152 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 209 >gi|160935922|ref|ZP_02083296.1| hypothetical protein CLOBOL_00815 [Clostridium bolteae ATCC BAA-613] gi|158441164|gb|EDP18881.1| hypothetical protein CLOBOL_00815 [Clostridium bolteae ATCC BAA-613] Length = 231 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 100/210 (47%), Gaps = 14/210 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V DD+ +V+ I L G+ ++ ++ E E+L + +V + ++ G Sbjct: 4 ILVCDDDKQIVEAIDIYLTGEGFKVIKAYDGYEALEYLD---KNEVDLLIVDVMMPGLDG 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 + +R +S +P+I +S + + G DD + KP + E++ARV + RR Sbjct: 61 IRTTLKVRENSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQMRRYT 120 Query: 119 -LKVSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 L N +A+ G +++ D ++ V G+ L E IL L+ N GK + + Sbjct: 121 QLGNLNQQADGQIYKCGGLQINDDNKEVTVDGDAIKLTPIEYNILLLLVKNAGKVFSIDE 180 Query: 173 IFSAIYGLFDEAV-EENVVESHISKLRKKL 201 I+ I+ +EA+ +N V HI +R+K+ Sbjct: 181 IYEQIWN--EEAIGADNTVAVHIRHIREKI 208 >gi|126700671|ref|YP_001089568.1| two-component system response regulator [Clostridium difficile 630] gi|255308033|ref|ZP_05352204.1| two-component system response regulator [Clostridium difficile ATCC 43255] gi|115252108|emb|CAJ69946.1| Two-component response regulator [Clostridium difficile] Length = 226 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 14/163 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA S VPLI +S S + ++G DD + KP ++ ++ I RR+ N + Sbjct: 67 IRAISNVPLIFLSSRDSDMDLIMGINNGADDYITKPFSIEILVTKINGIIRRVY---NYS 123 Query: 127 ETGPI-----RVFSDGR---DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ I +F G+ + + + L + E +IL L+ N+ + V++ + ++ Sbjct: 124 DSNSILYCEDLMFDVGKGIIKHKYKDKSIELTKNEIKILTLLLKNKNRVVSRESLMMTLW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 DE V +N + ++++LR K++ +LGFD + +K+ +GY I Sbjct: 184 D-NDEFVTDNALTVNMNRLRSKVK-ELGFDDFIKTKKGIGYII 224 >gi|114326810|ref|YP_743967.1| two-component response regulator [Granulibacter bethesdensis CGDNIH1] gi|114314984|gb|ABI61044.1| two-component response regulator [Granulibacter bethesdensis CGDNIH1] Length = 226 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 7/188 (3%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGV 95 ++ +S D ++ L G G L L +R+ P++ +S + + +G Sbjct: 38 FMAASENFDAIVLDRMLPG-GIDGLRLLETLRSQDVNTPVLFLSALSGVDERVKGLKAGG 96 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153 DD ++KP E+LARV A+ RR K + + + R + G+ L RE Sbjct: 97 DDYLSKPFAFSELLARVEALTRRGKTDAPTTKLVVADLEMDLLSRGVKRGGQKIDLQPRE 156 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 R+LE+LM + + V +T + ++ FD + NV++ H+S+LR+K+ + + Sbjct: 157 FRLLEFLMRHADQVVTRTMLLEGVWDYHFDP--QTNVIDVHVSRLRQKVDKPFTVSLIHT 214 Query: 213 KRFLGYSI 220 R GY + Sbjct: 215 VRNAGYML 222 >gi|89899389|ref|YP_521860.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89344126|gb|ABD68329.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 240 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 25/178 (14%) Query: 57 GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 GE L L + RAH + +P+I ++ + D+G DD + KP +E+LAR+ Sbjct: 60 GESGLALAKRWRAHPRTKAIPIIMLTARGDETDRVAGLDAGADDYIAKPFSTKELLARMR 119 Query: 114 AIYRR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 A+ RR + V +T RV G+ L E ++L+YLM++ Sbjct: 120 AVLRRRAPEQVGGVVSVGALSLDTATYRV-------TFAGQPLKLGPTEFKLLQYLMSHA 172 Query: 165 GKRVAKTQIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ Q+ ++G +F +EE V+ H+ +LR+ L + G V++ R GY + Sbjct: 173 ERVHSRGQLLDKVWGDHVF---IEERTVDVHVKRLREALGAQAG-QMVETVRGAGYRL 226 >gi|333011380|gb|EGK30794.1| transcriptional regulatory protein creB [Shigella flexneri K-272] gi|333012275|gb|EGK31657.1| transcriptional regulatory protein creB [Shigella flexneri K-227] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ V + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 + + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ ++ Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVCSRQQLMDSV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V+ HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-VDIHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|315605837|ref|ZP_07880869.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315312535|gb|EFU60620.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 234 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 5/158 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121 R+ A P++ ++ ++ + G DD V KP E++AR+ AI RR + Sbjct: 72 RLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTMGGEE 131 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + + D + G L E ++L YL+ N G+ V+K QI ++ + Sbjct: 132 EDALLRVGDLVIDEDAHEVTRAGVQIDLSPTEFKLLRYLVINAGRVVSKMQILDHVWE-Y 190 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 D E +VES+IS LR+KL + + +KR +GY Sbjct: 191 DWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGY 228 >gi|255280977|ref|ZP_05345532.1| phosphate regulon transcriptional regulatory protein PhoB [Bryantella formatexigens DSM 14469] gi|255268425|gb|EET61630.1| phosphate regulon transcriptional regulatory protein PhoB [Bryantella formatexigens DSM 14469] Length = 224 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 72/149 (48%), Gaps = 7/149 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE + R IR S VP+I I+ + L+ + G DD V KP + A+V A+ Sbjct: 58 GENGFTICRKIREISDVPVIFITARVQEEDELNGYAMGADDYVTKPFSLPVLYAKVTALI 117 Query: 117 RRLKVSN--NRAETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQ 172 R+ S+ R G I V D R EV E LP +E +L + + N + ++ Q Sbjct: 118 GRMHGSSAGRRIRAGDIEV--DVRTHEVWSGEERCELPPKEYELLLFFLENPKRIFSREQ 175 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + +G +D E VV++HI KLRK L Sbjct: 176 LLIRFWG-YDFDGNERVVDNHIKKLRKLL 203 >gi|213854683|ref|ZP_03382923.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 184 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L R IR S +P++ ++ L + G DD + KP RE++ARV I RR K Sbjct: 14 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 73 Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + AE+ P+ + G+ L E R+L+ L GK ++ Q+ + Sbjct: 74 PQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNH 132 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203 +Y + V + ++SHI LR+KL + Sbjct: 133 LYDDY-RVVTDRTIDSHIKNLRRKLES 158 >gi|210617979|ref|ZP_03291838.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787] gi|210149053|gb|EEA80062.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787] Length = 225 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 76/145 (52%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 ++ R +RA SQVP+I ++ + L F+ GVD+ ++KP + ++ARV AI +R + Sbjct: 65 QVCREVRALSQVPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVNAILKRGRA 124 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + + G I + ++ L +E +L Y + N+ +++ +I + ++ Sbjct: 125 AASEDLIDAGVIVIDKAAHLVKIDDVPIDLSVKEFELLTYFVENQKMALSREKILNNVWD 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D + +++H+ KLR KL K Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGEK 208 >gi|168818174|ref|ZP_02830174.1| response regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205344977|gb|EDZ31741.1| response regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086566|emb|CBY96337.1| probable transcriptional regulator ycf27 OmpR-like protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 240 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K + AE+ P+ + G+ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|166030990|ref|ZP_02233819.1| hypothetical protein DORFOR_00671 [Dorea formicigenerans ATCC 27755] gi|166029257|gb|EDR48014.1| hypothetical protein DORFOR_00671 [Dorea formicigenerans ATCC 27755] Length = 223 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 79/158 (50%), Gaps = 4/158 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP+I +S + + G D+ V KP + A+V A+ RR + + Sbjct: 67 IRKISKVPIIFLSSANDNMNIVMAMNMGGDEFVEKPFDLSVVTAKVQAVLRRAYAFRGTM 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + + + L + E RIL+ LM N G+ V++ + + ++ DE Sbjct: 127 DVLEHAGVMLNVNDATVTCGSQSVELTKNEFRILKLLMENSGRIVSRENLITRLWE-SDE 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++N + ++++LRKKL + + +K+ +GY ++ Sbjct: 186 FIDDNTLTVNVARLRKKLEEIGAENWIQTKKGIGYIVE 223 >gi|26986774|ref|NP_742199.1| DNA-binding response regulator CzrR [Pseudomonas putida KT2440] gi|148545300|ref|YP_001265402.1| two component heavy metal response transcriptional regulator [Pseudomonas putida F1] gi|167031064|ref|YP_001666295.1| two component heavy metal response transcriptional regulator [Pseudomonas putida GB-1] gi|170719233|ref|YP_001746921.1| two component heavy metal response transcriptional regulator [Pseudomonas putida W619] gi|325272092|ref|ZP_08138528.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] gi|24981367|gb|AAN65663.1|AE016193_4 DNA-binding response regulator CzrR [Pseudomonas putida KT2440] gi|148509358|gb|ABQ76218.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|166857552|gb|ABY95959.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida GB-1] gi|169757236|gb|ACA70552.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida W619] gi|324102788|gb|EGC00199.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] Length = 224 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 19/167 (11%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 +L IR S+V +I ++ + L D G DD + KP E+LAR+ ++ RR Sbjct: 61 DLLETIRKTSRVRIIMLTARGRINDKLKGLDGGADDYLVKPFEFPELLARIRSLQRRGDE 120 Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 LK+++ ++ RVF G ++ + F L L LM+ G+ + ++Q Sbjct: 121 LVEKSSLKIADLELDSVRHRVFRGGTRIDLTTKEFAL-------LHLLMSRTGEALTRSQ 173 Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I S ++ + FD + NV++ I +LR K+ + + + R +GY Sbjct: 174 IISLVWDMNFD--CDTNVIDVAIRRLRSKIDDPFETKLIHTLRGVGY 218 >gi|322804938|emb|CBZ02497.1| putative two component response regulator transcriptional regulatory protein [Clostridium botulinum H04402 065] Length = 217 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 4/149 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P+I ++ + + G DD + KP E+LAR+ A+ RR + + Sbjct: 72 IPVIFVTAKDDVLDRVKGLKLGADDYITKPFESIELLARIEAVLRRCDKMEEVIKLNHLN 131 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 +F R + +GE+ + +E +L + N+ +++ QI ++G +D E V+ Sbjct: 132 IFPKQRLVKSEGEIIDITLKEYELLMLFIKNKNIALSRDQILERVWG-YDYFGETRTVDI 190 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221 H+ ++R+KL K D + + +GY ++ Sbjct: 191 HVLRIREKLNLK---DCIKTVYKVGYRLE 216 >gi|310826554|ref|YP_003958911.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308738288|gb|ADO35948.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 228 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 5/149 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAET-G 129 VP++ ++ S + D G DD + KP E+LAR+ A+ RR +V + A T Sbjct: 72 NVPVLLLTAKDSTADKVKGLDMGADDYLVKPFVTEELLARIRALGRRPWEVYQDNAITFS 131 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + + + + G L +E ++LE + N G ++K QI I+G+ A+ EN Sbjct: 132 DLSLNINSGELLIGGAPIKLTSKEAQLLEMFIRNPGMTISKEQILDRIWGIESMAM-ENS 190 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VE ++ LRKKL+ + + R LGY Sbjct: 191 VEIYVHYLRKKLKKSRTV--IKTIRGLGY 217 >gi|298490023|ref|YP_003720200.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298231941|gb|ADI63077.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 242 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121 +R S VP+I ++ + + + G DD V KP +E+ AR+ ++ RR+ Sbjct: 71 LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKTGATG 130 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ G IR+ ++ R E L E +LE L++ G+ ++++I ++G Sbjct: 131 IPSSGVIHVGNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEVWG 190 Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203 E V+ VV+ HIS+LR KL + Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215 >gi|291458362|ref|ZP_06597752.1| subtilin biosynthesis regulatory protein SpaR [Oribacterium sp. oral taxon 078 str. F0262] gi|291418895|gb|EFE92614.1| subtilin biosynthesis regulatory protein SpaR [Oribacterium sp. oral taxon 078 str. F0262] Length = 230 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 10/170 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P++ +S + + G DD ++KP RE+LAR+ A RR + Sbjct: 61 EVCRKIRDELLCPILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARIDANLRREQR 120 Query: 122 SNN-RAETGPIRVFSD--GRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S AE +++ + G D ++ GE PL +RE I+E L + G+ ++ I Sbjct: 121 SQYINAEKKRTKLYFNELGIDLLEHSVKISGEAIPLSKREYDIVELLALHAGQVFSREHI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + ++G E VVE HI K+RKK +++ D G WN Sbjct: 181 YERVWGYDLEGDSYTVVE-HIRKIRKKF-SEVSPDTEYISTVWGIGYKWN 228 >gi|253580967|ref|ZP_04858229.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847809|gb|EES75777.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 247 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 11/144 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------L 119 IR + +P+I +S + + G DD V KP + E++ARV + RR + Sbjct: 83 IREENPLPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTRLGAAI 142 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V N ETG + + D ++ V G+V L E IL LM N+G+ + QI+ I+ Sbjct: 143 PVENAHIYETGGLSINDDLKEVRVDGDVVKLTPIEYNILFLLMKNQGRVFSINQIYENIW 202 Query: 179 GLFDEAV-EENVVESHISKLRKKL 201 +EAV +N V HI +R+K+ Sbjct: 203 N--EEAVAADNTVAVHIRHIREKI 224 >gi|239980465|ref|ZP_04702989.1| two-component systen response regulator [Streptomyces albus J1074] gi|291452324|ref|ZP_06591714.1| two-component system response regulator [Streptomyces albus J1074] gi|291355273|gb|EFE82175.1| two-component system response regulator [Streptomyces albus J1074] Length = 246 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/234 (25%), Positives = 112/234 (47%), Gaps = 23/234 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57 +++DD V+D +G V+++G ++LE +S R D+ ++ + + Sbjct: 15 ILIVDDEPAVRDALRRSLAFEGYGTEVAVDGLDALEK----AASYRPDLIVLD-IQMPRM 69 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 + + R+ A VP++ ++ ++ + D+G DD + KP E+ ARV A+ R Sbjct: 70 DGLTAARRVRAAQDTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLR 129 Query: 118 RLKVSNNRA---ETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRV 168 R + +A + G + F+D R EV L R E +LE L+A+ + + Sbjct: 130 RSSYAVEQAAPDDDGDVLAFADLRMDLSTREVLRGNRPVELTRTEFTLLEMLLAHPRQVL 189 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 + QI A++G FD N ++ ++ LR+K + G +P V + R +GY + Sbjct: 190 TREQILKAVWG-FDFEPTSNSLDVYVMYLRRK--TEAGGEPRLVHTVRGVGYVL 240 >gi|255533554|ref|YP_003093926.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255346538|gb|ACU05864.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 227 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 75/154 (48%), Gaps = 4/154 (2%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNN 124 + ++ V ++ ++ S + + +SG DD + KP E++AR+ + RR + Sbjct: 71 KRNTDVAILMLTALGSTENIVTGLESGADDYLVKPFKLEELVARMRTLIRRSSKQAAVTD 130 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 R + + + G+ L E R+LEYL+ N K +++ QI ++ + D Sbjct: 131 RISIADLEINIASKTVTKTGKPVNLTATEYRLLEYLLKNHNKVLSRIQILENVWDI-DFN 189 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + NVV+ +I+ LRKK+ N G + + +GY Sbjct: 190 LGTNVVDVYINYLRKKIDNVNGGRLIHTVFGMGY 223 >gi|300779477|ref|ZP_07089335.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300504987|gb|EFK36127.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 224 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 74/166 (44%), Gaps = 4/166 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G +LE R V +I D +++ +D G DD + KP H E+ AR+ + Sbjct: 57 GDGLSILENLRSRSKQDGVIIISAKD--AIEDKIDGLKLGADDYLAKPFHLSELGARIYS 114 Query: 115 IYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR S N I + + V + L R+E +L +L+ N+ K ++K I Sbjct: 115 VIRRKHFGSTNGIYVNEIYIDLLAKTVRVNSLLLTLTRKEFDLLLFLVGNKNKNISKVAI 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + G + D + + SH+ L+KKL D + + +GY Sbjct: 175 AEHLSGEMADMMDNHDFIYSHLKNLKKKLTEAGCKDYIKTTYGMGY 220 >gi|221195649|ref|ZP_03568703.1| DNA-binding response regulator [Atopobium rimae ATCC 49626] gi|221184415|gb|EEE16808.1| DNA-binding response regulator [Atopobium rimae ATCC 49626] Length = 223 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 18/166 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S V +I ++ S L G DD V KP + + +L +A + RR+ V Sbjct: 63 VCREVRQKSNVAIIAVTSRNSDLDELMMLSLGADDFVAKPYNTQILLLHIATVLRRVGVV 122 Query: 123 NNRA----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + +T RV + G E L + E RIL LM N G V++ + Sbjct: 123 AEPSAEITHGGVTLDTAACRVHAAGGSAE-------LTKNELRILAILMRNAGTVVSRQR 175 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I ++ DE V++N + ++S LR+ L + V ++R LGY Sbjct: 176 IQEELWQ-SDEFVDDNTLTVNVSHLRQTLAGIGVEEYVSTRRGLGY 220 >gi|220908785|ref|YP_002484096.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219865396|gb|ACL45735.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 224 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 14/210 (6%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-S 71 +GY DG+S G + L A+ D++ ++ L G +EL R +RA + Sbjct: 25 EGYRVTVAHDGMS--GLS-------LAREAQPDLAILDWML--PGLTGIELCRRLRATGN 73 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 ++P+I ++ + + D+G DD V KP E+LAR+ A RR + V + + Sbjct: 74 KIPVILLTARDEVGDRVTGLDAGADDYVVKPFSIEELLARIRAHLRRTQEVDEDILQFED 133 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + R+ L +E +LEYL++N + + QI ++G +D + N++ Sbjct: 134 LSLNRRTREVRRGQRSIELTAKEFDLLEYLLSNPRQVYTRDQILEKVWG-YDFMGDSNII 192 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++ LR KL + + + R +GY++ Sbjct: 193 EVYVRYLRLKLEEQGEKRLIHTVRGVGYAL 222 >gi|15807405|ref|NP_296136.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6460233|gb|AAF11960.1|AE002072_2 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 236 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 3/158 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+L + +R +S P++ +S +Q + ++G DD + KP E+ AR+ A+ RR Sbjct: 78 LDLVQALRQYSSTPVLVLSARTGVQERVAGLNAGADDYLTKPFAMPELDARITALLRR-T 136 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + V + L E RILE +M + ++ I S +YG Sbjct: 137 AAGTGVNLGNTALSTSSLLLTVNDKNVNLTEHEARILELMMRTPERVFSRADIESHLYGW 196 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E N VE IS+LRKKL + + + R +GY Sbjct: 197 --ETPNSNSVEVRISQLRKKLESAGSDLRIRTIRNVGY 232 >gi|262192308|ref|ZP_06050463.1| DNA-binding response regulator [Vibrio cholerae CT 5369-93] gi|262031801|gb|EEY50384.1| DNA-binding response regulator [Vibrio cholerae CT 5369-93] Length = 203 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I RA +P++ ++ + + D G D+ + KP E+LAR+ I RR S Sbjct: 48 LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 104 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE G + + ++ + L R E +IL LM G+ ++K + A++ Sbjct: 105 SGSAEELISVGELDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 164 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +DE +N +E HI LRKKL + L V + R +GY I+ Sbjct: 165 G-WDEGCSDNAIEVHIHNLRKKLPDNL----VKNVRGVGYMIE 202 >gi|255527946|ref|ZP_05394788.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255508373|gb|EET84771.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 217 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 4/149 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P+I ++ S+ + +G DD + KP E+LAR+ + R + N + Sbjct: 72 IPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLRHYNKNTNVINFEDVE 131 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + + GE L +E +L L+ N+ + + ++ I+G +D E +++ Sbjct: 132 INLEEMTARKAGEAVELTLKEFELLVVLVQNKNVVLTREKLIEKIWG-YDYVGETRTIDN 190 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221 HI KLRKKL+ K D + + LGY ++ Sbjct: 191 HIQKLRKKLQWK---DKIKTVFKLGYRLE 216 >gi|228950402|ref|ZP_04112562.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809217|gb|EEM55678.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 235 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/167 (23%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P++ IS + ++G DD ++KP H+ ++A++ + RR Sbjct: 65 RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSYLRRAYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 KV + E + ++ + +++ + + R E +LE LM N + V++ + + ++ Sbjct: 125 PKVEDRMVEQQGLCLYPERLVLKLRNQEIDITRNEAILLEMLMKNYPRVVSREVLLNKLW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223 + V++N + + +++RKKL+ D +++ R +GY I W+ Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLQIEDAIETIRSVGYRLHITWD 230 >gi|126729385|ref|ZP_01745199.1| two-component response regulator [Sagittula stellata E-37] gi|126710375|gb|EBA09427.1| two-component response regulator [Sagittula stellata E-37] Length = 228 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 3/142 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119 E+ R +RA S VP++ ++ + + G DD V KP RE++ARVAAI RR Sbjct: 61 EVCRRLRARSDVPVLFLTARDDEVDRIVGLEMGADDYVTKPFSPREVVARVAAILRRSGT 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ G + + + R G+ L E ++L+ L+ G+ + ++ +A++G Sbjct: 121 PARDDTRGHGALTLDREARLCRAAGQPVALTGTEFQMLDTLIGAPGRLFTRAELAAAVWG 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 + + ++SH+ LR+KL Sbjct: 181 AGAQQ-SDRTMDSHLRNLRRKL 201 >gi|114569494|ref|YP_756174.1| two component transcriptional regulator [Maricaulis maris MCS10] gi|114339956|gb|ABI65236.1| two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 223 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 5/152 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TG 129 + P++ +S + ++ +G DD + KP E+LARV A+ RR R + G Sbjct: 72 RTPVLILSALGEVDDRVEGLKAGGDDYLVKPYAFAELLARVEALARRRDPDTVRTKLVVG 131 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 + + R +GE L RE R+LE+LM + G+ V +T + ++ FD + N Sbjct: 132 DLEMDLLARTVIREGEDILLQPREFRLLEFLMKHSGQVVTRTMLLEKVWDYHFDP--QTN 189 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V++ HIS+LR K+ + + R GY + Sbjct: 190 VIDVHISRLRSKIDKPFPRSLLHTVRGAGYRL 221 >gi|329849811|ref|ZP_08264657.1| transcriptional activator protein copR [Asticcacaulis biprosthecum C19] gi|328841722|gb|EGF91292.1| transcriptional activator protein copR [Asticcacaulis biprosthecum C19] Length = 223 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 90/201 (44%), Gaps = 29/201 (14%) Query: 47 SAIEAFLIGKGEKVL-----ELPRII-------------------RAHSQVPLIGISDYP 82 + IEA L G G++ L E+P +I + VP++ +S Sbjct: 23 AGIEARLAGDGQQGLDAVKAEMPDVIILDRMMPVMDGVTMLQQLRSEGTDVPVLFLSALG 82 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDP 140 L+ + +G DD + KP E++ARV A+ RR + G + + R Sbjct: 83 ELEDRVSGLRAGADDYLVKPYALTELVARVEALARRKDKDAVDTVLRVGDLEMNLISRVV 142 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRK 199 + Q + L RE ++LE+LM + G+ V +T + ++ FD + NV++ HIS+LR Sbjct: 143 KRQNKTIDLQPREFQLLEFLMRHVGQSVTRTMLLEKVWAYHFDP--QTNVIDVHISRLRS 200 Query: 200 KLRNKLGFDPVDSKRFLGYSI 220 KL + + R GY + Sbjct: 201 KLDKDFDRPMLHTVRGEGYQL 221 >gi|325265898|ref|ZP_08132584.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella denitrificans ATCC 33394] gi|324982536|gb|EGC18162.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella denitrificans ATCC 33394] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 1/128 (0%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 F G DD + KP RE++AR+ A RR N G +++ + + G Sbjct: 96 FAQGADDYLTKPFSPRELVARIHARLRRAPSGNAWRSAGRLQLNPETQRVTADGANIECS 155 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 E ++L +LM + + ++ Q+ ++G D VEE V++ I +LR+ L + D + Sbjct: 156 SSEFKLLHFLMTHPERVFSRRQLLDHVWG-EDACVEERTVDTQIGRLRRLLESAGLSDYI 214 Query: 211 DSKRFLGY 218 + R GY Sbjct: 215 QTVRGSGY 222 >gi|312874618|ref|ZP_07734642.1| putative response regulator protein GraR [Lactobacillus iners LEAF 2053A-b] gi|311089848|gb|EFQ48268.1| putative response regulator protein GraR [Lactobacillus iners LEAF 2053A-b] Length = 222 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S VP+I I+ + + G D+ + KPI +A++ A+ RR KV + Sbjct: 66 IRQISHVPIIFITSHTESGDIVRAMQMGADEYITKPIDITVTIAKIQAVLRRTYDYKVGS 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G +++ E + V L R E ILE L N ++AK + D Sbjct: 126 DSIMYGDLKLNLSVAHLEGKNFVLELTRTELLILEILF-NFKNKIAKREAIINYCWQGDA 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +++N + +I++LRKKL+ +G+D + +K+ +GY + Sbjct: 185 FIDDNTLAVNIARLRKKLKT-VGYDELIQTKKGIGYYL 221 >gi|229169182|ref|ZP_04296896.1| Two-component response regulator [Bacillus cereus AH621] gi|228614248|gb|EEK71359.1| Two-component response regulator [Bacillus cereus AH621] Length = 235 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 11/164 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++ + +F E +G+ L + E +LE LM + V + ++ A Sbjct: 125 LAAESDCLGVNGLLLFPSQHTVEWKGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLEESGIKNAIVTKRGYGYAL 225 >gi|254518869|ref|ZP_05130925.1| LOW QUALITY PROTEIN: response regulator [Clostridium sp. 7_2_43FAA] gi|226912618|gb|EEH97819.1| LOW QUALITY PROTEIN: response regulator [Clostridium sp. 7_2_43FAA] Length = 194 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 2/158 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120 E+ R ++ P+I +S S+ ++ G DD + KP E+LAR+ ++RR Sbjct: 34 EICRRLKRGKNTPVIMLSAKDSVMDKVNGLQIGADDYIPKPFAIEELLARIEVVFRRQDN 93 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++++ + I + R + E L +E +L L+ N+ + V + ++ I+G Sbjct: 94 LNDSIVKFKDILINRRSRIVKRNNEEINLTNKEYELLMILIDNKDRIVTREELLEKIWGY 153 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E E NV + +I LR KL NK + + + R +GY Sbjct: 154 GYEP-ETNVTDVYIRYLRSKLNNKNKEEYIQTIRSVGY 190 >gi|157369487|ref|YP_001477476.1| DNA-binding transcriptional activator KdpE [Serratia proteamaculans 568] gi|157321251|gb|ABV40348.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 74/161 (45%), Gaps = 20/161 (12%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R S +P+I +S + + + D+G DD ++KP E+LARV RR + Sbjct: 69 RDLRQWSAIPVIVLSARNAEEDKIAALDAGADDYLSKPFGIGELLARVRVALRR---HSG 125 Query: 125 RAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + P+ FS+ R QGE L E R+L L+AN GK + + Q+ S ++ Sbjct: 126 SLQESPLVSFSEITVDLINRRVLRQGEDLHLTPIEFRLLAELLANSGKVLTQRQLLSHVW 185 Query: 179 GLFDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216 G N VE H LR LR KL DP K L Sbjct: 186 G-------PNYVE-HSHYLRIYMGHLRQKLEADPARPKHLL 218 >gi|49481373|ref|YP_038858.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332929|gb|AAT63575.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 8/150 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 66 RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVTKQ 125 Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E I V R V L E IL Y M N G + + Q+ S I Sbjct: 126 LLENEDDILSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYFMKNPGIVLTREQLISRI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207 +G ++ A ++ V SHI LR KL K + Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|52140690|ref|YP_086139.1| DNA-binding response regulator [Bacillus cereus E33L] gi|51974159|gb|AAU15709.1| DNA-binding response regulator [Bacillus cereus E33L] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 8/152 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 64 VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123 Query: 123 NNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I V R V L E IL Y M N+G + + Q+ S Sbjct: 124 KRLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMRNQGIVLTREQLIS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 I+G ++ A ++ V SHI LR KL K + Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|4530445|gb|AAD22036.1| response regulator PnpR [Streptococcus pneumoniae] Length = 250 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 11/120 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLK----------VSNNRAETGPIRVFSDGRDPEVQ 143 G DD + KP RE+LARV A+ RR K ++++ G ++V+ + + Sbjct: 111 GADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNIADDSWLFGTLKVYPERHEVYKA 170 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ L +E +L YLM + + + ++ I+G +D E +V+ HI KLR+K+ + Sbjct: 171 NKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKIED 229 >gi|307132025|ref|YP_003884041.1| DNA-binding response regulator in two-component regulatory system with BaeS [Dickeya dadantii 3937] gi|306529554|gb|ADM99484.1| DNA-binding response regulator in two-component regulatory system with BaeS [Dickeya dadantii 3937] Length = 273 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 7/172 (4%) Query: 33 EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFD 92 E E W++ I L+ G L L R IR S VP+I ++ L + Sbjct: 78 EVEPWVREHP---CQLILLDLMLPGRDGLTLCRAIRGFSNVPIIMVTARTDEIDRLLGLE 134 Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNN--RAETGPIRVFSDGR-DPEVQGEVFPL 149 G DD + KP RE++ARV + RR + + + P + R G L Sbjct: 135 IGADDYICKPYSPREVVARVKTLLRRCRWQHEPLPGDALPALLIDQNRYQASYLGRHLEL 194 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E R+L+ L A G+ ++ Q+ +Y + V + ++SHI LR+KL Sbjct: 195 TPAEFRLLKTLSAEPGRVFSREQLLDHLYDDY-RVVTDRTIDSHIKNLRRKL 245 >gi|296138775|ref|YP_003646018.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296026909|gb|ADG77679.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 230 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 9/152 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDF---FDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ R +RA P + + + +DF D+G DD V KP E++AR A+ R Sbjct: 62 LEVCREVRAAR--PEVAVLMLTARTDEMDFVVGLDAGADDYVGKPFRMFELMARTRALLR 119 Query: 118 RLKVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R + + + G IR+ + R V G L +E +L +LM G+ +++ I Sbjct: 120 RSAPAPDTGDVLDAGGIRLDAKARRVTVDGSDVALANKEFELLRFLMERAGQLLSREDIL 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 + ++G D ++ HIS LR+K+ + G Sbjct: 180 ADVWGDSD-LRGSKTLDMHISWLRRKIGDDTG 210 >gi|284053175|ref|ZP_06383385.1| two component transcriptional regulator [Arthrospira platensis str. Paraca] gi|291569177|dbj|BAI91449.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 246 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 12/158 (7%) Query: 52 FLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA 110 LI L+L R++R H Q VP++ I + + + ++G DD + KP RE +A Sbjct: 72 LLILDATNGLDLCRMLRHHGQSVPILIIGNKENANNCAFYLEAGADDYLTKPFSIREFIA 131 Query: 111 RVAAIYRRLKVSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163 R A+ RR ++ GP+ ++ + ++GE L ++ R+LE ++ Sbjct: 132 RCRALIRRQRIGKF---PGPVMLQYKDIILYQEECRVIIRGEEVQLSPKQFRLLELFLSY 188 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + ++ Q+ I+G D + V+ HI LR+KL Sbjct: 189 PRRVWSREQLLDVIWGT-DFVGDSKTVDVHIRWLREKL 225 >gi|266620404|ref|ZP_06113339.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288867981|gb|EFD00280.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 231 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 101/210 (48%), Gaps = 14/210 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V DD+ +V+ I L G+ ++ ++ E + L+++ + D+ ++ + G Sbjct: 4 ILVCDDDKQIVEAIDIYLTGEGFTVIKAYDGYEALDLLENN-QVDLMIVDVMMPGLDGIR 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 L +R S +P+I +S + + G DD + KP + E++ARV + RR Sbjct: 63 TTLK--VRETSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYT 120 Query: 120 KVSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ N +T G + + D ++ V GE+ L E IL L+ N GK + + Sbjct: 121 QLGNMNQQTAGQVYKCGGLAINDDNKEVTVDGELIKLTPIEYNILLLLVKNAGKVFSIDE 180 Query: 173 IFSAIYGLFDEAV-EENVVESHISKLRKKL 201 I+ I+ +EA+ +N V HI +R+K+ Sbjct: 181 IYEQIWN--EEAIGADNTVAVHIRHIREKI 208 >gi|237720754|ref|ZP_04551235.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|229449589|gb|EEO55380.1| two-component system response regulator [Bacteroides sp. 2_2_4] Length = 228 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 12/165 (7%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + IR + +P++ ++ S LD FD+G DD + KP RE+ AR+ + +R Sbjct: 62 ELAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR-- 119 Query: 121 VSNNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V+ N E V++D R D E G L +E +L Y++ N + +++ +I Sbjct: 120 VAGNAQELPQELVYADLRIDLQRKDVERNGISIKLSPKEYNLLLYMVENAERVLSRVEIA 179 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ FD N ++ +I+ LRKK+ + +K +G+ Sbjct: 180 EKVWNTHFDTGT--NFIDVYINYLRKKIDRDFEPKLIHTKAGMGF 222 >gi|297588714|ref|ZP_06947357.1| response regulator [Finegoldia magna ATCC 53516] gi|297574087|gb|EFH92808.1| response regulator [Finegoldia magna ATCC 53516] Length = 239 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 8/148 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++L + R S P+I IS + + ++ D+G DD + KP + E+LARV + RRL Sbjct: 64 IDLIKKFREFSTTPIIVISARSNDEDKIEALDAGADDFLTKPFNVEELLARVRSTIRRLN 123 Query: 121 VS-NNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S NNR E G I++ R V+GE L E +L L N GK + I Sbjct: 124 YSENNRIDNNVTFENGDIKIDYPSRSVFVKGEEIHLMPIEYSLLCLLSKNIGKVLTHQYI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 I+ + ++ + + + +++ LRKK+ Sbjct: 184 LKTIWVNYLDS-DLSSLRVYMTSLRKKI 210 >gi|225375196|ref|ZP_03752417.1| hypothetical protein ROSEINA2194_00821 [Roseburia inulinivorans DSM 16841] gi|225212976|gb|EEG95330.1| hypothetical protein ROSEINA2194_00821 [Roseburia inulinivorans DSM 16841] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LE R +R + +I ++ + +++G DD + KP +L ++ A +RR Sbjct: 61 LEFVRWMRCNYNTYIICLTALDQEMDQVVGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + +G I + ++ L + E ++L + + N + ++KTQI ++ Sbjct: 121 EKTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVF 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 L + V+EN + +I +LR+K+ + PV K G WN Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-TPVYIKNIRGLGYIWN 224 >gi|118586652|ref|ZP_01544091.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163] gi|118432904|gb|EAV39631.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163] Length = 241 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 81/160 (50%), Gaps = 4/160 (2%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E + +R + +P++ ++ ++T F G+DD + KPI E+ R++A+ RR Sbjct: 78 VEFAKTVRQLNENIPILFVTARDDIKTKKAGFRVGIDDYLVKPIDLDELKLRISAVLRRA 137 Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S N + E G + + S+ + G PL RE IL +++ G+ ++ ++ + Sbjct: 138 NISQNQKIEIGNLLLKSEEISASINGVPIPLTVREFNILFKMLSFAGRAFSRAELLDDFW 197 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 A V+ +I+KLR+K ++ F+ + + LGY Sbjct: 198 DTESNA-SLRAVDVYITKLREKFKSTNAFE-IKTIHGLGY 235 >gi|22299907|ref|NP_683154.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22296092|dbj|BAC09916.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 251 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 8/143 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S VP+I ++ + + + G DD V KP +E+ AR+ ++ RR++ ++ Sbjct: 75 LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIEKTSTSG 134 Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G IR+ ++ R E L E +LE L+ G+ ++ +I ++G Sbjct: 135 IPSSGVIQVGNIRIDTNKRQVYKGDERIRLTGMEFMLLELLVGRSGEPFSRAEILEQVWG 194 Query: 180 LFDE-AVEENVVESHISKLRKKL 201 E V+ VV+ HIS+LR KL Sbjct: 195 YTPERHVDTRVVDVHISRLRAKL 217 >gi|34762634|ref|ZP_00143627.1| Two-component response regulator czcR [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741605|ref|ZP_04572086.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13] gi|256844930|ref|ZP_05550388.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_36A2] gi|294785787|ref|ZP_06751075.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27] gi|27887714|gb|EAA24790.1| Two-component response regulator czcR [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429253|gb|EEO39465.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13] gi|256718489|gb|EEU32044.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_36A2] gi|294487501|gb|EFG34863.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27] Length = 224 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 83/160 (51%), Gaps = 5/160 (3%) Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +RA+ ++ ++ ++ +++ + D G DD + KP E+LAR+ AI RR K Sbjct: 61 EVVKHLRANKNETAVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIIRR-K 119 Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N N + + V + + G+ L +E +LEYL+ N+G+ +++ +I ++ Sbjct: 120 YGNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E E N+++ I +RKK+ + +KR LGY Sbjct: 180 DYAYEG-ESNIIDVLIKNIRKKIDLGDSKPLIHTKRGLGY 218 >gi|319939572|ref|ZP_08013931.1| response regulator Rr1 [Streptococcus anginosus 1_2_62CV] gi|319811161|gb|EFW07467.1| response regulator Rr1 [Streptococcus anginosus 1_2_62CV] Length = 228 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP + +LA+V + RR Sbjct: 67 IRKISKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDNNVLLAKVQGLLRRSYEFGTDQ 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + D +GEV L + E +IL L + G VA+ + ++ D Sbjct: 127 SLLEYHGVILNLKSMDMVYEGEVITLTKNEFQILRVLFEHSGSIVARDDLMKELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEEAGLKNFIETKKGIGYGL 222 >gi|313499205|gb|ADR60571.1| DNA-binding response regulator [Pseudomonas putida BIRD-1] Length = 220 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 15/167 (8%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LEL R +RA +P++ ++ +L + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 LELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRR- 118 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S RA+ I DP Q G L +E +L L+A GK + ++ Sbjct: 119 --SVGRAKV-LIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLT 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +YG +DE E N +E +I LRKKL N L + + R +GY ++ Sbjct: 176 QLLYG-WDEEPESNTLEVNIYHLRKKLFNGL----IRTVRGIGYLVE 217 >gi|311693076|gb|ADP95949.1| two component transcriptional regulator, winged helix family [marine bacterium HP15] Length = 221 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 18/224 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D L+ DG G S++ + +E +ED A+ L L Sbjct: 3 LLLVEDDRLLADGLSGQLEKAGFSVD--TTYTAKEAAILGEQEDYRAVILDLGLPDGNGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R R H P++ ++ ++ +G DD + KP E++AR+ AI RR + Sbjct: 61 DVLRKWRTHQIGCPVLILTARGDWHDKVEGLKAGADDYLAKPFQTEELIARLNAIVRRSE 120 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V R E R D G L E R+L LM+ G +K Q+ Sbjct: 121 GRIHSMVKAGRFELDENRQSLKSED----GTEHSLTGTEFRLLRCLMSRPGHVFSKEQLM 176 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y L D ENV+E++I +LRK +G D + ++R GY Sbjct: 177 EQLYNLNDTP-NENVIEAYIRRLRK----LVGNDTIATRRGQGY 215 >gi|326773621|ref|ZP_08232904.1| DNA-binding response regulator [Actinomyces viscosus C505] gi|326636851|gb|EGE37754.1| DNA-binding response regulator [Actinomyces viscosus C505] Length = 219 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 23/158 (14%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P+I ++ S+ + + G DD + KP E+LAR+ +V TGP + Sbjct: 74 TPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARI-------RVRLRPDATGPDQ 126 Query: 133 VFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182 + RD ++G L RE + E M + G+ +++ Q+ SA++GL FD Sbjct: 127 MRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAETFMRHPGQVLSREQLLSAVWGLDFD 186 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVVE ++S LRNKLG V++ R +GY + Sbjct: 187 PG--SNVVEVYVS----YLRNKLGRQRVETVRGMGYRL 218 >gi|300088634|ref|YP_003759156.1| winged helix family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528367|gb|ADJ26835.1| two component transcriptional regulator, winged helix family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 223 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 21/165 (12%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 +A P++ ++ + Q ++G DD + KP + E+ AR+ A+ RR + + Sbjct: 68 KAGVTTPILMLTARGTAQEKAQGLNTGADDYLAKPFEYNELFARICALGRRPR------Q 121 Query: 128 TGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 P+ + DG ++ +GE L E R+LE N + + +I I Sbjct: 122 MAPLVIEIDGITIDITAHRVSLKGETVELTANEFRVLELFANNPNVIIERVRIEEYISTT 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD----PVDSKRFLGYSID 221 D+ + NVV+ I K+LR KLG+D P+ + R GY ++ Sbjct: 182 HDKDFKSNVVDVII----KRLREKLGWDPQTGPIQTVRGCGYRLN 222 >gi|291525415|emb|CBK91002.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291528479|emb|CBK94065.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 217 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 1/129 (0%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P+I ++ +L L SG +D + KP E+LARV + RR + I Sbjct: 72 IPVIFLTAKATLDDRLRGLTSGAEDYMVKPFEIVELLARVNIVLRRYNKMEQQLTFKDIA 131 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + + ++ G+ L +E +LE LM N+ + + +I+ I+G + +VE ++ Sbjct: 132 IDTKNQNVSKAGKHIELTPKEFELLELLMRNKNITLFREKIYEEIWG-SEYSVESRTLDL 190 Query: 193 HISKLRKKL 201 HI +LRKKL Sbjct: 191 HIQRLRKKL 199 >gi|228967929|ref|ZP_04128940.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228791796|gb|EEM39387.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 8/150 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S+VP+I ++ TL F+ G DD V KP +LAR + K S Sbjct: 66 RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKASKK 125 Query: 125 RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E I+V R V L E IL Y M N+G + + Q+ S I Sbjct: 126 PLENEDDTLSIHGIQVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLISRI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207 +G ++ A ++ V SHI LR KL K + Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|228942259|ref|ZP_04104798.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975189|ref|ZP_04135747.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981827|ref|ZP_04142122.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228777939|gb|EEM26211.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228784468|gb|EEM32489.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817303|gb|EEM63389.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942914|gb|AEA18810.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 225 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 7/146 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++D S + + +G DD + KP E++ARV AI RR Sbjct: 62 EICRQIRLVKTTPIIIVTDNVSSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 120 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + E + +F D V+ GE L +RE +L +L+ N+ +++ + + Sbjct: 121 CNQQKEINFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR 202 ++G ++ V NVV+ +I +RKKL+ Sbjct: 181 VWG-YNVVVNPNVVDLYIGYVRKKLK 205 >gi|254519262|ref|ZP_05131318.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226913011|gb|EEH98212.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 232 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 4/111 (3%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLP 150 G DD + KP RE+LAR+ A+ RR K E T I + + R+ + + L Sbjct: 99 GADDYMTKPFSIRELLARIKAVLRRTKSLGGSEEIFKTNGILINFERREVLISDKKIDLT 158 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +E +LE L+ NRGK + + + I+G ++ E V+ HI LRKK+ Sbjct: 159 LKEFELLEILVKNRGKILTRETLLDKIWG-YEYVGETRTVDVHIRYLRKKI 208 >gi|190150575|ref|YP_001969100.1| phosphate regulon transcriptional regulator PhoB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263920|ref|ZP_07545524.1| Phosphate regulon transcriptional regulatory protein phoB [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915706|gb|ACE61958.1| phosphate regulon transcriptional regulatory protein PhoB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870785|gb|EFN02525.1| Phosphate regulon transcriptional regulatory protein phoB [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 213 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 3/149 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 +Q+P++ ++ S + ++G DD V KP + ++AR+ ++ RR +N+ Sbjct: 58 AQIPILMLTARSSEDDCIVCLNTGADDYVTKPFSPKVLIARIESLLRRTYQNNDIINIDD 117 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + Q + L E ++L + M + K ++ Q+ ++G D VE+ V Sbjct: 118 LILVQNAKRITFQKKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWG-NDIYVEDRTV 176 Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +S+I +LRK L GF+ V + R GY Sbjct: 177 DSYIRRLRKSL-EPCGFERYVQTVRGSGY 204 >gi|168259535|ref|ZP_02681508.1| response regulator [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350765|gb|EDZ37396.1| response regulator [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 240 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K + AE+ P+ + G+ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|270308724|ref|YP_003330782.1| DNA-binding response regulator [Dehalococcoides sp. VS] gi|270154616|gb|ACZ62454.1| DNA-binding response regulator [Dehalococcoides sp. VS] Length = 225 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 3/137 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125 IRA S +P++ ++ + Q F+ G DD + KP E++ARV ++ +RL +N Sbjct: 68 IRAFSSLPILILTARNNEQEIFTAFELGADDYITKPFQPLELIARVKSLLKRLNRTNQDL 127 Query: 126 -AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + G + + ++ + + L E ++L L+ G V+ I +I+G +E Sbjct: 128 GIKYGHWKFGTSLKEISYKNNIINLTITEGQLLHILLTKGGSIVSYADISKSIWGR-NEY 186 Query: 185 VEENVVESHISKLRKKL 201 + +++HI ++R+KL Sbjct: 187 YAKETIKTHIMRIRQKL 203 >gi|16765461|ref|NP_461076.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56412969|ref|YP_150044.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161613184|ref|YP_001587149.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167991049|ref|ZP_02572148.1| response regulator [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168229457|ref|ZP_02654515.1| response regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236293|ref|ZP_02661351.1| response regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242208|ref|ZP_02667140.1| response regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451571|ref|YP_002046183.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472565|ref|ZP_03078549.1| response regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737843|ref|YP_002115222.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250857|ref|YP_002147092.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264591|ref|ZP_03164665.1| response regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361899|ref|YP_002141535.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242249|ref|YP_002216218.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389136|ref|ZP_03215748.1| response regulator [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929186|ref|ZP_03220329.1| response regulator [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353273|ref|YP_002227074.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857567|ref|YP_002244218.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238912561|ref|ZP_04656398.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16420665|gb|AAL21035.1| response regulator in two-component regulatory system with BaeS [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56127226|gb|AAV76732.1| putative two-component system response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161362548|gb|ABX66316.1| hypothetical protein SPAB_00893 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194409875|gb|ACF70094.1| response regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458929|gb|EDX47768.1| response regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713345|gb|ACF92566.1| response regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197093375|emb|CAR58825.1| putative two-component system response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214560|gb|ACH51957.1| DNA-binding response regulator BaeR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242846|gb|EDY25466.1| response regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290555|gb|EDY29910.1| response regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936765|gb|ACH74098.1| response regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199606234|gb|EDZ04779.1| response regulator [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321730|gb|EDZ06929.1| response regulator [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273054|emb|CAR38003.1| putative two-component system response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205330587|gb|EDZ17351.1| response regulator [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335782|gb|EDZ22546.1| response regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338415|gb|EDZ25179.1| response regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|206709370|emb|CAR33710.1| putative two-component system response regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247346|emb|CBG25171.1| putative two-component system response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994189|gb|ACY89074.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158692|emb|CBW18204.1| putative two-component system response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913123|dbj|BAJ37097.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224781|gb|EFX49844.1| Response regulator BaeR [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615161|gb|EFY12083.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617752|gb|EFY14648.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624654|gb|EFY21485.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626895|gb|EFY23691.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634081|gb|EFY30817.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635728|gb|EFY32438.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640267|gb|EFY36930.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646315|gb|EFY42828.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649408|gb|EFY45844.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656528|gb|EFY52817.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661504|gb|EFY57728.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665608|gb|EFY61792.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667132|gb|EFY63299.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671138|gb|EFY67266.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675221|gb|EFY71298.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680830|gb|EFY76865.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687005|gb|EFY82982.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323130456|gb|ADX17886.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192769|gb|EFZ77996.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198799|gb|EFZ83898.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204931|gb|EFZ89922.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208234|gb|EFZ93178.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210956|gb|EFZ95817.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215741|gb|EGA00484.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223394|gb|EGA07726.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227221|gb|EGA11392.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231186|gb|EGA15301.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233621|gb|EGA17713.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237691|gb|EGA21751.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245674|gb|EGA29668.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247751|gb|EGA31693.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252967|gb|EGA36800.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256769|gb|EGA40494.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259475|gb|EGA43110.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268258|gb|EGA51733.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271952|gb|EGA55368.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326623967|gb|EGE30312.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628362|gb|EGE34705.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989065|gb|AEF08048.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 240 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K + AE+ P+ + G+ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|15643165|ref|NP_228209.1| response regulator [Thermotoga maritima MSB8] gi|4980903|gb|AAD35484.1|AE001719_10 response regulator [Thermotoga maritima MSB8] Length = 225 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 76/148 (51%), Gaps = 2/148 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP 130 P++ ++ ++ + + G DD + KP RE++ARV A+ RR S + + G Sbjct: 74 NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGD 133 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + + L ++E +ILEYL+ N+ + V K ++ ++ FD+ V +V+ Sbjct: 134 LILDTATKKAYRGSKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS-FDDEVFSDVL 192 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 SHI LRKK+ + + R +GY Sbjct: 193 RSHIKNLRKKVDKGFKKKIIHTVRGIGY 220 >gi|317472867|ref|ZP_07932175.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316899667|gb|EFV21673.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 224 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 3/162 (1%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LEL + IR + P++ ++ ++ + D G DD + KP E++ARV + RR Sbjct: 60 LELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRK 119 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + +NR G + + + ++ + L +E +LEY++ N+ +++ QI + Sbjct: 120 PALVSNRLTIGDLVLDCESKEVTRADKKISLSSKEFMVLEYMLRNQNIVLSREQIEQHAW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D NVV+ +I LRKK+ G + + R +GY + Sbjct: 180 N-YDFEGGSNVVDVYIRYLRKKIDEGFGCKLIHTVRGVGYVL 220 >gi|300088402|ref|YP_003758924.1| winged helix family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528135|gb|ADJ26603.1| two component transcriptional regulator, winged helix family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 231 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP----IRVFSDGRDPE----- 141 + G DD ++KP RE++ARV A+ RRL+++ P +R+ D E Sbjct: 91 LEMGADDYLSKPFSMRELVARVKAMLRRLEMTAGTEAGIPAGLTLRLGGLELDAERHRLT 150 Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 V G+ L RE +L YLM NRG+ ++ + ++G +D +E V+ H+ LR+K+ Sbjct: 151 VGGQEVELSPREFDLLAYLMNNRGRVFSRQSLVDRVWG-YDYPGDERTVDVHVRWLRQKI 209 >gi|270264670|ref|ZP_06192935.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041353|gb|EFA14452.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 238 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 2/150 (1%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L + R +R + VP++ ++ L + G DD + KP RE++ARV Sbjct: 59 LMLPGSDGLTVCRELRRFTDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 118 Query: 113 AAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 I RR + N+ E + + QG++ L E R+L+ L + G ++ Sbjct: 119 KTILRRCYRPLENQQEETQLHIDEPRFQASYQGQMLDLTPAEFRLLKTLASQPGNVFSRE 178 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q+ + +Y + V + ++SHI LR+KL Sbjct: 179 QLLNNLYDDY-RVVTDRTIDSHIKNLRRKL 207 >gi|254775852|ref|ZP_05217368.1| TcrA [Mycobacterium avium subsp. avium ATCC 25291] Length = 222 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 5/178 (2%) Query: 45 DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 DV ++ L G+ G +VL R + V ++ D +T D FD G DD + KP Sbjct: 46 DVVILDIMLPGRSGYEVLRRMRSNNVWTPVLMLTAKDGEYDET--DAFDLGADDYLTKPF 103 Query: 104 HHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMA 162 R ++AR+ A+ RR T R +G L RE +LE+LM Sbjct: 104 SFRVLVARLRALVRRGAPERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMR 163 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+ V K I + ++ +NVVE ++ LR+K+ G + +++ R +GY + Sbjct: 164 NKDVVVTKADILANVWDAHHHG-PDNVVEVYVGYLRRKIDVPFGTNTIETIRGVGYRL 220 >gi|226309917|ref|YP_002769811.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092865|dbj|BAH41307.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 226 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 96/218 (44%), Gaps = 23/218 (10%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY L DG EE Q +E V ++ G+ EL R IR Sbjct: 22 LAKEGYNVLACVDG-----------EEASQLLEQESVQLAIVDVMMPGKNGWELCREIRE 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 +P+I ++ ++ F +G DD + KP E+L R+ A+ RR ++ + + Sbjct: 71 FYDLPVILLTAKGEVRDKEKGFLAGTDDYLTKPFEPTELLYRIKALLRRYQMVSKQ---- 126 Query: 130 PIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 I V +D +V+ E+ LP +E +L L + + + Q+ ++G D Sbjct: 127 -IIVLNDTVIDRISHVVKVKEELIHLPLKEFELLAQLASFPDRIFTRDQLLELVWG-GDT 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ HI +LR+K K + + R LGY ++ Sbjct: 185 ESDSRTIDVHIKRLREKFTEKTNDFVISTVRGLGYKLE 222 >gi|225018020|ref|ZP_03707212.1| hypothetical protein CLOSTMETH_01956 [Clostridium methylpentosum DSM 5476] gi|224949226|gb|EEG30435.1| hypothetical protein CLOSTMETH_01956 [Clostridium methylpentosum DSM 5476] Length = 233 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 102/209 (48%), Gaps = 12/209 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V+ DDRA+V I L ++ ++ ++ L+ E L + + + ++ K + + Sbjct: 6 VLVVDDDRAIVDSVAIFLNNENIGVIKAYDGLDALEQLSENQVHLI--LMDIMMPKLDGI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 + +I R +P+I +S + + G DD + KP + E++ARV + RR Sbjct: 64 QAMLKI-REKRNIPIILVSAKTEDTDKIIGLNMGADDYITKPYNPLELVARVKSQLRRYT 122 Query: 120 KVSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ N+R +T G + + +D + V GE L E RI E LM N+ + + + Sbjct: 123 RLGNDRNQTASAILRTGGLELNTDTKQLTVDGEFVKLTPIEYRITELLMRNQNRVFSIGE 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I+ ++ V +N+V HI ++R+K+ Sbjct: 183 IYEQVWQEPCYNV-DNIVAVHIRRIREKI 210 >gi|258611947|ref|ZP_05243319.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL R2-503] gi|300765000|ref|ZP_07074988.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N1-017] gi|258607360|gb|EEW19968.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL R2-503] gi|300514300|gb|EFK41359.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N1-017] Length = 240 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 12/119 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRL--------KVSNNRAET---GPIRVFSDGRDPEV 142 G DD + KP RE++AR+ AI RR +++ + T G +++ D + + Sbjct: 99 GADDYMTKPFSPREVVARIKAILRRTEGKAEIIEEITEDSEATILIGDLKILPDSYEVYL 158 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR K+ Sbjct: 159 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 216 >gi|144898432|emb|CAM75296.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Magnetospirillum gryphiswaldense MSR-1] Length = 225 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 8/188 (4%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGV 95 +L ++ R D ++ L G L + + IR A + P++ +S + + +G Sbjct: 38 FLATTERYDSMIVDRML--PGVDGLTIVQTIRGAGNTTPVLILSALGKVDDRVKGLKAGG 95 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153 DD + KP E+LAR+ A+ RR S R + + + R G L RE Sbjct: 96 DDYLVKPYAFAELLARIEALGRRTSASQPETRLKVEDLEMDLLARTVTRSGRDIDLQPRE 155 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 R+LEYL+ + G+ V +T + ++ FD + N+++ HIS+LR+K+ + + Sbjct: 156 FRLLEYLLRHAGQVVTRTMLLENVWEYHFDP--QTNLIDVHISRLRQKVDKDFDQALIHT 213 Query: 213 KRFLGYSI 220 R GY++ Sbjct: 214 VRGAGYTL 221 >gi|118464519|ref|YP_882587.1| TcrA protein [Mycobacterium avium 104] gi|118165806|gb|ABK66703.1| TcrA protein [Mycobacterium avium 104] Length = 222 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 5/178 (2%) Query: 45 DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 DV ++ L G+ G +VL R + V ++ D +T D FD G DD + KP Sbjct: 46 DVVILDIMLPGRSGYEVLRRMRSNNVWTPVLMLTAKDGEYDET--DAFDLGADDYLTKPF 103 Query: 104 HHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMA 162 R ++AR+ A+ RR T R +G L RE +LE+LM Sbjct: 104 SFRVLVARLRALVRRGAPERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMR 163 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+ V K I + ++ +NVVE ++ LR+K+ G + +++ R +GY + Sbjct: 164 NKDVVVTKADILANVWDAHHHG-PDNVVEVYVGYLRRKIDVPFGTNTIETIRGVGYRL 220 >gi|52082613|ref|YP_081404.1| putative two-component response regulator YycF [Bacillus licheniformis ATCC 14580] gi|52788011|ref|YP_093840.1| YycF [Bacillus licheniformis ATCC 14580] gi|319648478|ref|ZP_08002694.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2] gi|52005824|gb|AAU25766.1| putative two-component response regulator YycF [Bacillus licheniformis ATCC 14580] gi|52350513|gb|AAU43147.1| YycF [Bacillus licheniformis ATCC 14580] gi|317389557|gb|EFV70368.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2] Length = 235 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 10/169 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R +P+I ++ S + + G DD V KP RE+LARV A RR Sbjct: 62 VEVCREVRKKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQN 121 Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S+N + G + +F D + E L RE +L YL + G+ + + Sbjct: 122 TAAPAEEESSSNEIQIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 229 >gi|297539212|ref|YP_003674981.1| winged helix family two component transcriptional regulator [Methylotenera sp. 301] gi|297258559|gb|ADI30404.1| two component transcriptional regulator, winged helix family [Methylotenera sp. 301] Length = 224 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 3/161 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ ++IRA S +P++ ++ + + G DD V KP RE++ARV AI RR + Sbjct: 63 DVCKLIRAESNIPILFLTARNHEIDRIVGLEIGADDYVTKPFSPREVVARVNAILRRTAL 122 Query: 122 SNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V + + +G++ L R E +L+ L+ + ++ Q+ ++ + Sbjct: 123 KQESQHKNVSFVVDELANRIQYRGQLLDLTRYEFLLLKTLIQQPQRVFSRNQLMDIVW-V 181 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 E E V++HI LR KLR + + + + R +GYS+ Sbjct: 182 NAENTLERTVDAHIKTLRAKLRAVDMQSEAIITHRGMGYSL 222 >gi|296393295|ref|YP_003658179.1| transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296180442|gb|ADG97348.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 250 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 27/163 (16%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R +++P+I +S +D D+G DD V KP E+LAR+ A RR +NN+ Sbjct: 67 LRGWTKIPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVRR--GANNQP 124 Query: 127 ETGPI-------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 P+ +V D D EV L E +LE L+ N+GK V++ +I Sbjct: 125 GGEPVVAADSFVVDLVAKKVTKD--DKEVH-----LTPTEWGVLELLVRNQGKLVSQKEI 177 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 S ++G E + + ++++LR+KL DP + + L Sbjct: 178 LSEVWG-PSYKTETHYLRVYLAQLRRKLEA----DPANPRHLL 215 >gi|268611060|ref|ZP_06144787.1| response regulator [Ruminococcus flavefaciens FD-1] Length = 226 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 7/149 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R P++ +S Q+ L + +G DD + KP +LA++ A+ +R V Sbjct: 67 LRKKYDTPVLMMSARDDDQSKLTGYGTGADDYITKPFSIPVLLAKIRALMKRAVVKPENH 126 Query: 127 ETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E + D ++ V+ G V L +E +L +M ++G+ + K ++F ++G FD Sbjct: 127 EISGCGITLDMQNHVVRKNGTVIKLNVKEYELLRTMMEHQGEIMDKNKLFDTVWG-FDCF 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSK 213 E + V HI LR+K+ + DP + K Sbjct: 186 SEPSTVSVHIRWLREKIED----DPNEPK 210 >gi|261206781|ref|ZP_05921472.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289566983|ref|ZP_06447385.1| two-component response regulator colocalized with HrtAB transporter [Enterococcus faecium D344SRF] gi|294613962|ref|ZP_06693894.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|260078911|gb|EEW66611.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289161218|gb|EFD09116.1| two-component response regulator colocalized with HrtAB transporter [Enterococcus faecium D344SRF] gi|291593156|gb|EFF24733.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] Length = 222 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 3/151 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A +P++ I+ + F G DD + KPI E++ RV A+ RR K++ + T Sbjct: 70 ARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSKINYSSILT 129 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G ++ D F LP++E +L L++ K + Q+ I+GL D EE Sbjct: 130 IGQTKLELDTYTVVQNQHSFILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWGL-DTNTEE 188 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ HI +LR + F + + R LGY Sbjct: 189 RTIDVHIKRLRTRFEKTEDFQII-TVRGLGY 218 >gi|238917552|ref|YP_002931069.1| two-component system, OmpR family, phosphate regulon response regulator PhoB [Eubacterium eligens ATCC 27750] gi|238872912|gb|ACR72622.1| two-component system, OmpR family, phosphate regulon response regulator PhoB [Eubacterium eligens ATCC 27750] Length = 222 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 4/166 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +++ R+ A ++P+I ++ + + + G DD + KP E++ RV A+ Sbjct: 60 GYDIIKKLRLNSATKRLPVIMVTAKSTELDMIKGLEDGADDYIKKPFSVMELITRVKALL 119 Query: 117 RRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + + G I + + V G+ L +E +L YLMAN+ +++ I Sbjct: 120 RRTETDEAGVLDVGEIELNHERHVVTVSGKQVELTFKEYELLRYLMANKNIVLSRDSIVL 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G E E V+ HI LR+KL + + + R +GY I+ Sbjct: 180 KVWGTEFEG-ESRTVDMHIKTLRQKLGD--AGSRIRTVRNVGYVIE 222 >gi|229080396|ref|ZP_04212919.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228702905|gb|EEL55368.1| Two-component response regulator [Bacillus cereus Rock4-2] Length = 233 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121 IR +P+I +S + SG DD ++KP + E++ARV + RR K + Sbjct: 73 IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTSI 132 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N++ E G + V +D V+G+ L +E ILE L N+G ++ +I+ A++ Sbjct: 133 EHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIYEAVWK 192 Query: 180 -LFDEAVEENVVESHISKLRKKL 201 +F ++ +N V HI+K+R K+ Sbjct: 193 EVFYKS--DNTVMVHITKIRDKI 213 >gi|167464858|ref|ZP_02329947.1| two-component response regulator involved in phosphate regulation [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382891|ref|ZP_08056726.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153160|gb|EFX45615.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 237 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 15/170 (8%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ + S+ P+I ++ + + + G DD + KP E+L+RV+A+ RR Sbjct: 65 LSKLRQKGSKTPVIILTARNAEEEVVQGLKFGADDYITKPFGVAELLSRVSAVLRR--TG 122 Query: 123 NNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 N E G + ++ + + + + PL +E +L YL+ G V + Sbjct: 123 NKEVEDTGTHSGDKVITVGDLFIYPEKYEVVLNNQSIPLRPKEFEVLLYLVQRLGIVVTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + ++G FD + V+ H+S LRKKL ++S R +GY + Sbjct: 183 DDLMNVVWG-FDYIGGQRTVDVHVSSLRKKLEMNQQSVQIESIRGVGYKL 231 >gi|145593966|ref|YP_001158263.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303303|gb|ABP53885.1| response regulator receiver [Salinispora tropica CNB-440] Length = 251 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNN 124 R ++ ++ ++ SL+ L + G DD + KP E++ARV A+ RRL ++N Sbjct: 93 RGLPELAVVFLTAKDSLEDRLTGLNLGGDDYITKPFSVAEVVARVNAVLRRLGGRPSASN 152 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 R + + D G L E R+L +++ N G+ ++K QI + ++ +D Sbjct: 153 RLAVADLELDEDAHTVTRAGTPVELSPTEFRLLRHMLENAGRVLSKQQILAQVWQ-YDFP 211 Query: 185 VEENVVESHISKLRKKL 201 + VVE +S+LR+K+ Sbjct: 212 GDPGVVEKFVSQLRRKV 228 >gi|15802560|ref|NP_288587.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H7 EDL933] gi|12516285|gb|AAG57142.1|AE005434_6 transcriptional response regulatory protein (sensor BaeS) [Escherichia coli O157:H7 str. EDL933] Length = 240 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 6/155 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K + AE+ P+ + +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PLIIDEXRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|109897848|ref|YP_661103.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700129|gb|ABG40049.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] Length = 230 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 94/202 (46%), Gaps = 22/202 (10%) Query: 22 DGVSLEGF------NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPL 75 D +++EGF N E E+ +++ D ++ L GK L + + +R SQVP+ Sbjct: 22 DFLTIEGFATQVVHNGDEAEDAIRTKT-PDCVILDLMLPGKDG--LSICKDVRKFSQVPI 78 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF- 134 I ++ L G DD V KP RE++ARV AI RR + ++ I F Sbjct: 79 IMLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQAILRRATFAAPSSDETCILTFK 138 Query: 135 -----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA--VEE 187 ++ + E+ +V L E R+L+ LM+ G ++ + + Y ++A V Sbjct: 139 HISLNTERFECEINKQVTELTPVEFRLLKTLMSRPGTVFSRESLMQSCY---EDARIVSN 195 Query: 188 NVVESHISKLRKKLRNKLGFDP 209 ++SH+ LR K+ L DP Sbjct: 196 RTIDSHMKNLRNKV--ALTNDP 215 >gi|329736115|gb|EGG72388.1| putative transcriptional regulatory protein WalR [Staphylococcus epidermidis VCU045] Length = 219 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 23/198 (11%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 D Y A G+D V L +EE D+ ++ L G+ +E+ R +R + Sbjct: 28 DVYCAYDGNDAVDLI------YEE------EPDIVLLDIMLPGRDG--MEVCREVRKKYE 73 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNN 124 +P+I ++ S + + G DD V KP RE++ARV A RR + + N Sbjct: 74 MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQPAQEVSGATN 133 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 I ++ D + +GE L RE + YL + G+ + + + ++G +D Sbjct: 134 EITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWG-YDYF 192 Query: 185 VEENVVESHISKLRKKLR 202 + V+ I +LR+KL+ Sbjct: 193 GDVRTVDVTIRRLREKLK 210 >gi|332160894|ref|YP_004297471.1| two-component regulatory protein response regulator KdpE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318604799|emb|CBY26297.1| DNA-binding response regulator KdpE [Yersinia enterocolitica subsp. palearctica Y11] gi|325665124|gb|ADZ41768.1| two-component regulatory protein response regulator KdpE [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862950|emb|CBX73085.1| KDP operon transcriptional regulatory protein kdpE [Yersinia enterocolitica W22703] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 20/159 (12%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S +P+I +S S + + D+G DD ++KP E+LARV RR + + Sbjct: 71 LRQWSSIPIIVLSARSSEEDKVAALDAGADDYLSKPFGISELLARVRVALRR---HSGGS 127 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + P+ FSD R G L E R+L L+AN GK + + Q+ + ++G Sbjct: 128 QESPLINFSDISVNLINRQVTRAGIDLHLTPIEFRLLSALLANAGKVITQRQLLNQVWG- 186 Query: 181 FDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216 N VE H LR LR KL DP K L Sbjct: 187 ------PNYVE-HSHYLRIYMGHLRQKLETDPTRPKHLL 218 >gi|317490524|ref|ZP_07949002.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316910375|gb|EFV32006.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 232 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 69/144 (47%), Gaps = 7/144 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R S VP+I ++ + F+ G DD V KP RE++ARV A RR ++ Sbjct: 68 RELRRTSSVPIIFLTAKDEEVDKVVGFELGADDYVVKPFKPRELVARVRARLRRATSNDV 127 Query: 125 RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +E GP I + + GE L +E IL LM ++G+ VA +F ++ Sbjct: 128 ASEDGPGMLECCGITLDESAYTATLHGEALSLTPKEFAILACLMRDQGRPVASRDLFESV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G A N V HI LRKKL Sbjct: 188 WGEIANAQSNNTVMVHIRHLRKKL 211 >gi|307261733|ref|ZP_07543399.1| Phosphate regulon transcriptional regulatory protein phoB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868551|gb|EFN00362.1| Phosphate regulon transcriptional regulatory protein phoB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 213 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 3/149 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 +Q+P++ ++ S + ++G DD V KP + ++AR+ A+ RR +N+ Sbjct: 58 AQIPILMLTARSSEDDCIVCLNTGADDYVTKPFSPKVLIARIEALLRRTYQNNDIINIDD 117 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + Q + L E ++L + M + K ++ Q+ ++G D VE+ V Sbjct: 118 LILDQNAKRVTFQKKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWG-NDIYVEDRTV 176 Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +S+I +LRK L GF+ V + R GY Sbjct: 177 DSYIRRLRKSL-EPCGFERYVQTVRGSGY 204 >gi|261418620|ref|YP_003252302.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319765436|ref|YP_004130937.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261375077|gb|ACX77820.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317110302|gb|ADU92794.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 232 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 10/185 (5%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 DV I ++ +G +EL R+IR P++ +S + + G DD + KP Sbjct: 46 DVDLIILDIMMEGIDGMELCRMIRDRVDCPILFVSAKTLEEDKVQALSIGGDDYITKPFS 105 Query: 105 HREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYL 160 +E+ AR+ + RR + SN R + D EV +G PL ++E I++ L Sbjct: 106 LKELKARIDSHLRREERIRSNERYLLSSKNMTIDLLANEVFCKGRKLPLTKKEYEIVKLL 165 Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGY 218 M N+ +K +IF ++G+ ++ + V ES I +RKK++ DP S + G Sbjct: 166 MLNQKVVFSKERIFERVWGIDSDSQLDAVTES-IKNIRKKIK---AVDPETSYIQTLYGL 221 Query: 219 SIDWN 223 W+ Sbjct: 222 GYKWD 226 >gi|254467591|ref|ZP_05081000.1| two-component response regulator [Rhodobacterales bacterium Y4I] gi|206684339|gb|EDZ44823.1| two-component response regulator [Rhodobacterales bacterium Y4I] Length = 223 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 9/191 (4%) Query: 35 EEWLQSSARE-DVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFD 92 E LQ++A E DV I+ L G L L + +R A + P I ++ + +D + Sbjct: 35 EGLLQATAAEYDVLIIDRML--PGLDGLSLIKTLRGAGVRTPAIMLTALSGVNDRIDGLE 92 Query: 93 SGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 +G DD + KP E+ ARVAA+ RR L+ G + + R G+ L Sbjct: 93 AGADDYLVKPFAFGELAARVAALARRPGLQEQETVLRAGDLEMDLIRRKVTRAGQEIDLL 152 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209 RE R+LE+L+ +G+ +T + A++ + FD + NVVE+HIS+LR K+ G + Sbjct: 153 PREFRLLEHLLRRKGRVQTRTMLLEAVWDISFDP--QTNVVETHISRLRAKVDKPFGTEL 210 Query: 210 VDSKRFLGYSI 220 +++ R GY I Sbjct: 211 IETVRGAGYRI 221 >gi|154503687|ref|ZP_02040747.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149] gi|153795787|gb|EDN78207.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149] Length = 311 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 10/145 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR P+I ++ Y + F +G DD + KP + E+L RV AI RR A Sbjct: 149 IRKQFNAPIIFLTAYSGESDKVMGFSAGADDYIVKPFSNMELLMRVKAILRRSARGTAPA 208 Query: 127 ET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + + + QGEV L E +ILE L+ ++ K + I+ +I+ Sbjct: 209 QEEKKSHIPFGDLILDLECQSVLRQGEVIVLTYTEFKILELLVTHKKKIYSLENIYQSIW 268 Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203 ++AV ++ + HI +RKKL + Sbjct: 269 E--EDAVGDSAIMVHIKNIRKKLED 291 >gi|90422897|ref|YP_531267.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90104911|gb|ABD86948.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB18] Length = 241 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 84/174 (48%), Gaps = 20/174 (11%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE +L R IR S VP++ ++ ++ ++ G DD V KP RE+L R+ I Sbjct: 74 GETGFDLARFIRTTSSVPIVMLTARHEAESRIEGLQLGADDYVAKPFEPRELLLRIGNIL 133 Query: 117 RR-LKVSNNRAET---GPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKT 171 +R + V+ + E+ GP V+ R QG E+ L RER +L L A+ G+ V + Sbjct: 134 KRAMPVAAVKQESISFGPY-VYHLERGELRQGEEIIHLTDRERDMLRVLAASPGETVPRG 192 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSI 220 ++ V E V+ I++LR+K+ DP + + R +GY + Sbjct: 193 ELTGG-----GGTVNERAVDVQINRLRRKIEQ----DPANPLFLQAVRGIGYRL 237 >gi|322375301|ref|ZP_08049814.1| DNA-binding response regulator VicR [Streptococcus sp. C300] gi|321279564|gb|EFX56604.1| DNA-binding response regulator VicR [Streptococcus sp. C300] Length = 235 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 12/154 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP+I +S S + + G DD V KP +RE+ ARV A+ RR Sbjct: 61 LEVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120 Query: 121 -VSNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 VS + E+ G + + D + GE L RE +L +L ++ G+ + Sbjct: 121 LVSVDSQESDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ I +LR+K+ + Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 213 >gi|309951515|gb|ADO95181.1| phosphate regulon transcriptional regulatory protein PhoB [Sinorhizobium sp. M14] Length = 230 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 6/170 (3%) Query: 57 GEKVLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R +RA ++P+I ++ + +G DD + KP E++ARV Sbjct: 58 GVSGIELCRRLRARPNTERLPVIMLTARGEETERVRGLATGADDYLVKPFSTPELMARVR 117 Query: 114 AIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A+ RR K + ++ I + + + L E R+L++LMA+ G+ ++ Sbjct: 118 ALLRRSKPALISSILRYADIELDRESHRVHRERREVRLGPTEFRLLDFLMASPGRVFSRA 177 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 Q+ ++G D V+E V+ H+ +LRK L D + + R GYS+D Sbjct: 178 QLLDGVWG-HDLYVDERTVDVHVGRLRKALNFANKPDLIRTVRGAGYSMD 226 >gi|300867618|ref|ZP_07112266.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300334379|emb|CBN57436.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 233 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 23/205 (11%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L ++GY D+G + F + D+ ++ L GK L + + + Sbjct: 18 RVLTREGYEVDVADNGATGSEF---------ATQGNYDLLILDWMLPGK--TGLAICQKL 66 Query: 68 RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121 R+ + P++ ++ +L + D+G DD + KP RE+LARV A+ RR + Sbjct: 67 RSEGRATPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRPSILETGS 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 SN ++ ++V D E Q G L +E ++LEYLM + G+ + QI Sbjct: 127 SNFSGDSNRLQVADLELDFENQLAYRRGRTIDLSEKECQLLEYLMRHPGQLLTHEQIHQY 186 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++ E NV+ + I LR+K+ Sbjct: 187 LWP-DGEKPSSNVLAAQIRLLRRKI 210 >gi|299536046|ref|ZP_07049363.1| two-component response regulator YcbL [Lysinibacillus fusiformis ZC1] gi|298728470|gb|EFI69028.1| two-component response regulator YcbL [Lysinibacillus fusiformis ZC1] Length = 230 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 21/198 (10%) Query: 21 DDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIG 77 D+ +++EGFN + EE L + + + ++ LE+ +IIR + +P+I Sbjct: 19 DNYLTMEGFNVTTATNGEEALHNCLQNTFDLVILDIMIPKLNGLEVLKIIREQAALPIII 78 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG 137 +S S G DD + KP E ARV A+ RR +++AE + D Sbjct: 79 MSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATKYSSQAEQKQEVLEIDN 138 Query: 138 RDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-----YGLFDEAV 185 ++ G+ L +E IL+ + NR + K QI+ I YG Sbjct: 139 LKIDIVNFSIAKSGQEIKLTSKEFSILKLFVTNRQRVFTKEQIYQMIWKDAYYG------ 192 Query: 186 EENVVESHISKLRKKLRN 203 +EN++ HI +LR+K+ + Sbjct: 193 DENIINVHIRRLREKIED 210 >gi|291542818|emb|CBL15928.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] Length = 235 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/242 (25%), Positives = 105/242 (43%), Gaps = 34/242 (14%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 +++DD + D +DG ++ F N L+ E +++ + D++ ++ L G + Sbjct: 5 ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGLDALECIETQ-KMDLAILDVMLPDIDGFR 63 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + + IR P+I ++ + G DD + KP + E++ARV RR Sbjct: 64 ICQK---IREQYFYPIIILTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRY 120 Query: 120 KVSNNRAET----GPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 NN A T PI + + + G+ L E IL YL NRGK Sbjct: 121 VRYNNAANTEEKDTPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKV 180 Query: 168 VAKTQIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYS 219 ++ ++F I+G D N V +HI +LR+KL +P +F+ GY+ Sbjct: 181 ISSEELFENIWGEKFLD---NNNTVMAHIGRLREKLN-----EPAKKPKFIKTVWGVGYT 232 Query: 220 ID 221 I+ Sbjct: 233 IE 234 >gi|323341542|ref|ZP_08081780.1| response regulator [Lactobacillus ruminis ATCC 25644] gi|323091026|gb|EFZ33660.1| response regulator [Lactobacillus ruminis ATCC 25644] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 10/169 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +R SQ+P++ +S + G DD V KP + E++ARV ++ RR + Sbjct: 61 LAVVREVRKDSQIPVLMLSAKTDDLDKIQGLIQGADDYVTKPFNPLEVMARVKSLLRRSQ 120 Query: 121 --VSN---NRAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173 V N ++ E GP+ + D + E V G+ L E IL YL+A+ RV + +I Sbjct: 121 HDVKNDEPDQIEIGPLIIKKDSHEVETVTGKSIQLTALEFGIL-YLLASHPNRVFSADEI 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221 F ++ + V V H+S LR K+ G + V + +GY I+ Sbjct: 180 FERVWQQ-ESVVSAKTVMVHVSHLRDKIEESTGGEKVIQTVWGVGYKIE 227 >gi|255283797|ref|ZP_05348352.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] gi|255265680|gb|EET58885.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] Length = 220 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 13/165 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121 + R IR S++P+I ++ + L + G DD ++KP + + ++AR+ I +R +V Sbjct: 62 ICREIRKQSEIPIIVLTSRDTDFDELMSLNIGADDFISKPYNAQVLIARIQKILKRTYEV 121 Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N ++ + D E+ L + E IL L N+G + + I Sbjct: 122 QANSVLIHKGVTINLLKATASYGDKEID-----LTKNEMGILRLLTVNKGNIIPRDAIID 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ DE ++EN + +I +LRKKL D +++KR LGY + Sbjct: 177 ELWQ-SDEFIDENTLNVNIVRLRKKLSQIGASDYLETKRGLGYRV 220 >gi|217963397|ref|YP_002349075.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|217332667|gb|ACK38461.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|307572028|emb|CAR85207.1| two-component response regulator [Listeria monocytogenes L99] Length = 236 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 12/119 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRL--------KVSNNRAET---GPIRVFSDGRDPEV 142 G DD + KP RE++AR+ AI RR +++ + T G +++ D + + Sbjct: 95 GADDYMTKPFSPREVVARIKAILRRTEGKAEIIEEITEDSEATILIGDLKILPDSYEVYL 154 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR K+ Sbjct: 155 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 212 >gi|169334006|ref|ZP_02861199.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM 17244] gi|169258723|gb|EDS72689.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM 17244] Length = 226 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 89/185 (48%), Gaps = 9/185 (4%) Query: 25 SLEGFNSLEFEEWLQS---SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 + EG++++E + +++ ED I ++ R IR P+I +S Sbjct: 22 TFEGYDTVEVNDGMKAIEICKVEDFDIIVMDIMMPELDGFSAVREIRKTKDTPVIMLSAR 81 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD----- 136 + F+ G DD V KP +E++ RV AI +R + +++ + I + Sbjct: 82 GEEYDRIHGFEVGADDYVVKPFSPKELMMRVEAILKRTQNKSDKEKENIINIDGINIDLA 141 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 R + G+V L +E +L +L+ N+G +++ +I S ++G +D ++ +++HI Sbjct: 142 ARILRIDGKVVSLTPKEYDLLTFLIENQGIALSREKIISTVWG-YDYYGDDRTLDTHIKL 200 Query: 197 LRKKL 201 LRK L Sbjct: 201 LRKNL 205 >gi|153853764|ref|ZP_01995120.1| hypothetical protein DORLON_01111 [Dorea longicatena DSM 13814] gi|149753514|gb|EDM63445.1| hypothetical protein DORLON_01111 [Dorea longicatena DSM 13814] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LE R +R + +I ++ + +++G DD + KP +L ++ A +RR Sbjct: 61 LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + +G I + ++ L + E ++L + + N + ++KTQI ++ Sbjct: 121 EKTGAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVF 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 L + V+EN + +I +LR+K+ + PV K G WN Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224 >gi|153816362|ref|ZP_01969030.1| hypothetical protein RUMTOR_02614 [Ruminococcus torques ATCC 27756] gi|317501003|ref|ZP_07959211.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|331089043|ref|ZP_08337949.1| hypothetical protein HMPREF1025_01532 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846323|gb|EDK23241.1| hypothetical protein RUMTOR_02614 [Ruminococcus torques ATCC 27756] gi|316897581|gb|EFV19644.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|330406243|gb|EGG85762.1| hypothetical protein HMPREF1025_01532 [Lachnospiraceae bacterium 3_1_46FAA] Length = 232 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 11/144 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + +P+I +S + + G DD V KP E++ARV + RR A Sbjct: 67 IREKNSIPIIILSAKSEDADKILGLNVGADDYVTKPFSPLELVARVKSQLRRYTQLGGTA 126 Query: 127 E--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G +R+ D ++ V GE+ L E IL LM N+G+ + QI+ I+ Sbjct: 127 QNENDKIYSVGGLRINDDLKEVTVDGELVRLTPIEYNILLLLMKNQGRVFSINQIYEMIW 186 Query: 179 GLFDEAV-EENVVESHISKLRKKL 201 +EA+ +N V HI +R+K+ Sbjct: 187 N--EEAIGADNTVAVHIRHIREKI 208 >gi|90580895|ref|ZP_01236697.1| transcriptional regulatory protein CpxR [Vibrio angustum S14] gi|90437966|gb|EAS63155.1| transcriptional regulatory protein CpxR [Vibrio angustum S14] Length = 230 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 105/232 (45%), Gaps = 26/232 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD D + D + LEGF+ +E Q + D ++I+ L+ V+ Sbjct: 4 ILLVDD-----DIELTALLKDILELEGFDVIEANNGQQGLEKVD-NSIDLILLDVMMPVM 57 Query: 62 ---ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R +R P++ ++ + + G DD + KP RE+LAR+ A+ RR Sbjct: 58 NGTEMLRRLREAHSTPVMMLTAKGDEIDRVLGLELGADDYLPKPFSDRELLARIRAVLRR 117 Query: 119 LKVSNNRA-ETGPIRVFSD-----GRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKT 171 + SN +A E + + D GR V E+ + E +L Y + G+ ++K Sbjct: 118 TQASNEKATEKSDLLTYQDITIYPGRQEVVCQEIPIEMTGTELSLLSYFIQRPGQIISKE 177 Query: 172 QIFSAIYGL----FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 + + G FD A ++ H+S +RKKL +L P + + R GY Sbjct: 178 SLSLDVLGKRLARFDRA-----IDMHVSNIRKKLPERLDGKPRIKTLRGKGY 224 >gi|294498815|ref|YP_003562515.1| two-component response regulator [Bacillus megaterium QM B1551] gi|295704137|ref|YP_003597212.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294348752|gb|ADE69081.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294801796|gb|ADF38862.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 224 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 90/184 (48%), Gaps = 4/184 (2%) Query: 40 SSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 S A DV ++ +++ G+ + R+ + ++ ++ ++Q + D+G DD V Sbjct: 42 SEAHYDVLILD-WMMPNGDGIDVCKRLRKEGYAGAILMLTAKDAVQDRIQGLDAGADDYV 100 Query: 100 NKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRIL 157 KP E+LAR+ A+ RR + E + + + + E L RE ++L Sbjct: 101 IKPFEIDELLARLRALSRRNYAPILEEEVEIASMILKRASQTVQFDEEFIQLSPREFQLL 160 Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217 ++L+ N+G+ +++ I ++G ++ V +++ + LRKKL D + S R +G Sbjct: 161 DFLVKNKGQVLSRDIILDRVWG-YESDVSIKTIDATVKLLRKKLEKFNKQDLIQSIRGVG 219 Query: 218 YSID 221 Y I+ Sbjct: 220 YKIE 223 >gi|291544436|emb|CBL17545.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. 18P13] Length = 224 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 101/220 (45%), Gaps = 33/220 (15%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ L + EG+ E E+ +Q+ + ++ + Sbjct: 4 LLIVDDEANIR-----LVVKEYAEFEGYEVAEAEDGMQAVELVKSQDFDVIIMD-----I 53 Query: 62 ELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 +PR+ I+ + +P+I +S L F+ G+DD V KP +E++ARV Sbjct: 54 MMPRLDGFSACKEIKKYKNIPVIMLSARGEEYDKLFGFELGIDDYVVKPFSPKELMARVK 113 Query: 114 AIYRRLKVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGK 166 A+ +R S + A P R+ + GR+ V G+ + +E +L YL+ N Sbjct: 114 AVIKR---SEHAAPANPDRLKFEGLEIDMAGREVYVNGKRVSMTPKEYDLLFYLVKNSNI 170 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 + + ++ ++G +D ++ V++HI K LRN LG Sbjct: 171 ALTRDKLLEEVWG-YDFFGDDRTVDTHI----KMLRNSLG 205 >gi|290352169|dbj|BAI78795.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VCK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|227513408|ref|ZP_03943457.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227524551|ref|ZP_03954600.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227083281|gb|EEI18593.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227088226|gb|EEI23538.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 231 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 10/169 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR + +P++ ++ + + D+G DD + KP E+LAR+ + R Sbjct: 64 LEVLRRIRQNDDIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRVMLRH-- 121 Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S N+A + + D R + L +RE +L L+ N G+ + + ++ Sbjct: 122 -SQNQATSDDLFRIEDLTLNTKSRQVTRGNSLIQLTQREYELLLTLIKNAGETMTRDELL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + ++G+ E + NVV+ +I LR K+ + + R +GY + N Sbjct: 181 NLVWGVDFEG-QPNVVDVYIRYLRNKVDRNFKKTLIHTVRGVGYVLSAN 228 >gi|158338202|ref|YP_001519379.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308443|gb|ABW30060.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 249 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 76/153 (49%), Gaps = 12/153 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + +R + VP+I ++ + + + G DD + KP +E+ +R+ AI RR Sbjct: 64 LQVCQTLRESTGVPIIMLTALGEVSDRIKGLELGADDYLPKPFSPKELESRIQAILRRTV 123 Query: 121 VSNNRA-----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 +A E GP+R+ + R + G+ L E +L+ L++ G+ V+ Sbjct: 124 PGKGKAGAGHAAEQVIMEIGPLRIETHKRQVYLHGQRIQLTGIEFDVLKLLVSKAGQTVS 183 Query: 170 KTQIFSAIYGL-FDEAVEENVVESHISKLRKKL 201 ++ I ++G + + VV+ ++S+LR K+ Sbjct: 184 RSDILQQVWGYSANHYADLRVVDVNVSRLRSKI 216 >gi|157961570|ref|YP_001501604.1| two component transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157846570|gb|ABV87069.1| two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 224 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 3/151 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130 + P++ ++ + Q ++ ++G DD + KP E++AR+ A+ RR + +G Sbjct: 72 KAPVLILTARVNWQDKVEGLNAGADDYLVKPFQKEELVARLDALVRRSAGFVKPQITSGA 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + + + E ILEYLM + + VAK ++ IYG D+ + N + Sbjct: 132 LELDLAAKQVSLNEQPMEVTAFEYLILEYLMRHCHEVVAKQRLLDVIYG--DKEGDPNTI 189 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E +S+LRKKL +P+ + R GY + Sbjct: 190 EVMVSRLRKKLTKGGIENPIVTIRGQGYKFN 220 >gi|170736312|ref|YP_001777572.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818500|gb|ACA93082.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 221 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 20/215 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68 L + G+ DG + G +E R D+ ++A L G G VL R +R Sbjct: 20 LARLGHAVDLETDGATANGLLRVE---------RFDLVVLDANLPGMDGFTVL---RNLR 67 Query: 69 AH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 A S P++ ++ ++ + G DD + KP +RE+ ARV A+ RR N Sbjct: 68 ASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHANDVL 127 Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAV 185 T G + + R E+ G+ L R+E +LE ++A+R +R+ +K ++ + ++ +E Sbjct: 128 TLGGLVIDRSSRLAELDGQPLSLSRQEFALLE-ILASRPQRIFSKEELLNQLFSFGNEPT 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N VE +++++RKKL+ + + R +GY I Sbjct: 187 -ANAVEQYVTRVRKKLQGS--SVEIRTARGMGYQI 218 >gi|221066634|ref|ZP_03542739.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220711657|gb|EED67025.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 224 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 103/225 (45%), Gaps = 19/225 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EK 59 +L++D ALV G A G+ L+GF Q+ A S + ++ G E Sbjct: 4 LLVEDNALVASGVKA-----GLQLQGFGVDVVGCASQADAALKSSHFDVCVLDLGLPDED 58 Query: 60 VLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 L L + R SQ +P++ ++ ++ ++ +G DD + KP E+ AR+ A+ Sbjct: 59 GLHL--LARWRSQGLALPVLVLTARDAVGQRIEGLQTGADDYLVKPFDLHELAARLHALL 116 Query: 117 RRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + G + V G L RRE +L L+ + G+ ++ Q+ Sbjct: 117 RRAAGRTVDWIVLGDVNVDLAAGQAMRGGCAVDLSRREWALLRALLQSPGRVLSLEQLRD 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++YG + VE N V H+ LR+ KLG D V++ R +G+ + Sbjct: 177 SLYG-YSLDVESNAVNVHVHHLRR----KLGSDMVETVRGVGFRL 216 >gi|114765354|ref|ZP_01444471.1| phosphate regulon transcriptional regulatory protein PhoB [Pelagibaca bermudensis HTCC2601] gi|114542334|gb|EAU45363.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. HTCC2601] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 6/165 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R I+ + VP+I +S + ++G DD V KP RE++ARV A R Sbjct: 65 IEVCRQIKTRPETRGVPVIMLSARSEEIDRVRGLETGADDYVVKPYSLRELMARVKAQLR 124 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + + R E I + ++ G+ L E R+L M G+ ++ Q+ Sbjct: 125 RARPAAAGLRLEYDDIILDAETHRVTRDGQELKLGPTEFRLLSTFMEKPGRVWSREQLLD 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V+ V+ HI +LRK L G DP+ + R GY++ Sbjct: 185 RVWG-RDIYVDTRTVDVHIGRLRKALGIYGGGDPLRTVRGAGYAL 228 >gi|78063373|ref|YP_373281.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77971258|gb|ABB12637.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 221 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 20/215 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68 L + G+ DG + G +E R D+ ++A L G G VL R +R Sbjct: 20 LARLGHAVDLETDGATANGLLRVE---------RFDLVVLDANLPGMDGFTVL---RHLR 67 Query: 69 AH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 A S P++ ++ ++ + G DD + KP +RE+ ARV A+ RR N Sbjct: 68 ASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHANDVL 127 Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAV 185 T G + + R E+ G+ L R+E +LE ++A+R +R+ +K ++ + ++ +E Sbjct: 128 TLGGLVIDRSSRLAELDGQPLSLSRQEFALLE-ILASRPQRIFSKDELLNQLFSFGNEPT 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N VE +++++RKKL+ + + R +GY I Sbjct: 187 -ANAVEQYVTRVRKKLQGS--SVEIRTARGMGYQI 218 >gi|116492234|ref|YP_803969.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116102384|gb|ABJ67527.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 234 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 7/138 (5%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 Q+P+I ++ S + + G DD + KP +E+L+R+ I RR + N AE P Sbjct: 74 QIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTDRAINLAEIDPT 133 Query: 132 ----RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + D + V+ E L E ++L YL N + +++ QI ++G ++ Sbjct: 134 LQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQILEKVWG-YEYGG 192 Query: 186 EENVVESHISKLRKKLRN 203 + +V+ HIS LR KL N Sbjct: 193 QTRIVDIHISHLRDKLEN 210 >gi|329888261|ref|ZP_08266859.1| response regulator [Brevundimonas diminuta ATCC 11568] gi|328846817|gb|EGF96379.1| response regulator [Brevundimonas diminuta ATCC 11568] Length = 223 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE + +RA + P++ ++ S+ + ++G DD + KP E+ AR+ A+ RR Sbjct: 58 LEAVQAMRAGGLKTPVLMLTALGSVDDRVAGLNAGADDYLVKPFAFSELSARLQALVRRP 117 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 L + R + V G L E ++LE L N G V +T + ++ Sbjct: 118 PLAEATTRHRVADLEVDVAAHRATRAGRTLDLTPHEFKLLERLARNAGHAVTRTMLLESL 177 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G FD N++++HIS+LR K+ + + + R +GY + Sbjct: 178 WGFHFDP--RANLIDAHISRLRAKVDRGFDQELIHTIRGVGYVL 219 >gi|313683198|ref|YP_004060936.1| two component transcriptional regulator, winged helix family [Sulfuricurvum kujiense DSM 16994] gi|313156058|gb|ADR34736.1| two component transcriptional regulator, winged helix family [Sulfuricurvum kujiense DSM 16994] Length = 218 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 6/158 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + RA+ P I +S + ++T FD G +D + KP + E+L R+ A+ RR K Sbjct: 65 LQELRRANDHTPTIYLSSHQEIETITKAFDFGAEDYLKKPFNTDELLVRIHALLRRTK-G 123 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 R G + + + ++G L +E +++ + N G+ V K I ++ Sbjct: 124 KTRHCAGELCLDEAHKCVLMEGRELSLSLKEYQLMALFIRNAGEIVTKEAIMDTLWN-PS 182 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E + + + +I++L++ ++G + + + R +GY + Sbjct: 183 EMISDGAIRVYITRLKQ----EIGSERILNIRGVGYRL 216 >gi|312130354|ref|YP_003997694.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] gi|311906900|gb|ADQ17341.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] Length = 227 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 81/163 (49%), Gaps = 7/163 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L + +R + + P++ ++ + + + DSG DD ++KP E+ AR+ A+ RR Sbjct: 63 LTLCKTLRDNGNHTPILLLTALGTTEDIITGLDSGADDYLSKPFEFSELRARIRALTRRG 122 Query: 120 KV---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +N + + D + + + L +E +LE+ M+N G+ ++K ++ Sbjct: 123 NAVIQKSNILRVADLELNVDTKAVKRGDKEITLTAKEFSLLEFFMSNVGRVISKVELAEK 182 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I+ + FD NV+E +++ LRKK+ + ++ +GY Sbjct: 183 IWDITFDTGT--NVIEVYVNFLRKKIDKDFDVKLIHTQIGMGY 223 >gi|291523701|emb|CBK89288.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] Length = 231 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 16/171 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E R +R VP++ +S L+ + G DD + KP + E++++V A+ RR + Sbjct: 60 IETCRRMRERHSVPILFLSAKSEELDKLEGLEVGGDDYMTKPFSNMELISKVKALIRRYR 119 Query: 121 V----SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 V S NR ET +++F++ E L +E IL+ LM N + Sbjct: 120 VYDSGSANRTNKDESIETDGLKLFTNRNKVEFNDNEIKLTGKEYEILKLLMKNPDRIYTI 179 Query: 171 TQIFSAIYGLFDEAVE---ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I+ ++ DEA +N V HI LR KL G + ++ GY Sbjct: 180 EMIYEMVW---DEAFTYNAKNTVMVHIKNLRNKLIKACGDACIHTEWGRGY 227 >gi|228925531|ref|ZP_04088621.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228834132|gb|EEM79679.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 237 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 15/162 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 63 IEVCRKLRDKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122 Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V SN + F + E L +E +L++ +N G+ KTQ Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213 +F ++ D +E +N V HI KLRKK+ DP + K Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218 >gi|297559280|ref|YP_003678254.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843728|gb|ADH65748.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 231 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 17/150 (11%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +E+ + +R SQVP+I +S S + DSG DD V KP E+LAR+ A RR Sbjct: 60 MEVIQRLRGWSQVPIIVLSARHSAGEKVRCLDSGADDYVTKPFGMDELLARMRAAERRSV 119 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ + + G RV +GE L E ILE L + G+ V++ Sbjct: 120 RVDEAPVVRTPSFTVDLGAKRVLR-------EGEEVRLTPTEWHILEILARHAGQLVSQR 172 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q+ ++G ++ E N + ++++LR+KL Sbjct: 173 QLLHDVWGPAYQS-ETNYLRVYMAQLRRKL 201 >gi|226225049|ref|YP_002759156.1| two-component response phosphate regulator [Listeria monocytogenes Clip81459] gi|254993857|ref|ZP_05276047.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J2-064] gi|255520613|ref|ZP_05387850.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J1-175] gi|225877511|emb|CAS06225.1| two-component response phosphate regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328465109|gb|EGF36377.1| DNA-binding response regulator PhoP [Listeria monocytogenes 1816] gi|328471114|gb|EGF42018.1| DNA-binding response regulator PhoP [Listeria monocytogenes 220] Length = 236 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 12/119 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRL--------KVSNNRAET---GPIRVFSDGRDPEV 142 G DD + KP RE++AR+ AI RR +++ + T G +++ D + + Sbjct: 95 GADDYMTKPFSPREVVARIKAILRRTEGKAEIIEEITEDSEATILIGDLKILPDSYEVYL 154 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR K+ Sbjct: 155 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 212 >gi|198283804|ref|YP_002220125.1| winged helix family two component transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665314|ref|YP_002426436.1| DNA-binding response regulator [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248325|gb|ACH83918.1| two component transcriptional regulator, winged helix family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517527|gb|ACK78113.1| DNA-binding response regulator [Acidithiobacillus ferrooxidans ATCC 23270] Length = 220 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 30/158 (18%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 L R+ + +P+I IS +L ++ D G DD + KP E+LAR+ AI RR Sbjct: 63 LQRVRAGGNSLPIIIISARDALADRVEGLDLGADDYLVKPFAMGELLARLRAIIRRQGGQ 122 Query: 119 -----------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 L +S + A+ G + V L +E +L+ L+ G Sbjct: 123 GSPVLGNGSLQLDLSTHTAQIGELSVL--------------LTNKEFALLQALLLRPGSI 168 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 +++ Q+ +YG +DE VE N ++ I LRKKL K+ Sbjct: 169 LSRAQLEERLYG-WDEGVESNSIDFLIHGLRKKLGAKV 205 >gi|196229835|ref|ZP_03128699.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196226161|gb|EDY20667.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 221 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 75/148 (50%), Gaps = 2/148 (1%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIR 132 P++ +S +LQ + + G DD + KP E++AR+ ++ RR E I+ Sbjct: 74 PVLILSARDALQDKVKGLNLGADDYLAKPFSLEELIARIRSLLRRQGGKKTTVFEHRAIK 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + R EV+G+ L RE +LE M N+G+ + +T I ++ + ++ N+++ Sbjct: 134 LDLLARTVEVEGKRIDLTAREFSLLELFMQNQGRVLTRTMIAEKVWDSHSD-LDTNLLDV 192 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +LRKKL + + R +GY + Sbjct: 193 YMRRLRKKLESTPDKQYFKTLRGVGYEM 220 >gi|85373254|ref|YP_457316.1| two-component response regulator [Erythrobacter litoralis HTCC2594] gi|84786337|gb|ABC62519.1| two-component response regulator [Erythrobacter litoralis HTCC2594] Length = 251 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 18/175 (10%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 +EL R +R HS++P+I ++ + + G DD ++KP R +LAR+ AI RR Sbjct: 75 MELLRRLREHSELPVIFLTSKDDERDEEAGLEMGADDYISKPFSLRLLLARIRAILRRSG 134 Query: 120 -----KVSNNRAETGPIRVFSDGR---DPEVQ-----GEVFPLPRRERRILEYLMANRGK 166 V E+ ++ GR DP G+ L E ILE L A G Sbjct: 135 LEEGESVGTAPGESEVGETYARGRLTVDPARHQVTWDGKPVSLTVTEFLILEALAARPGV 194 Query: 167 RVAKTQIFSAIYGLFDEA-VEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 ++ Q+ A Y DE V++ V+SHI ++R+K R+ F +++ GYS Sbjct: 195 IKSRNQLMDAAYP--DEVYVDDRTVDSHIKRMRRKFRSVDREFGAIETLYGAGYS 247 >gi|318040122|ref|ZP_07972078.1| two-component response regulator [Synechococcus sp. CB0101] Length = 254 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 12/164 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118 IRA S+VP+I ++ + + + G DD + KP +E+ AR+ + RR Sbjct: 74 IRAQSEVPVIMLTALGDVADRITGLELGADDYMVKPFSPKELEARIQCVMRRASQGQGGS 133 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S+N G + V + R GE L E +LE L++ G+ + + + A Sbjct: 134 SVGSASSNVIAVGDLSVDFNRRQAFRCGERIRLTGMEFHLLELLISRNGEPINRLDMLEA 193 Query: 177 IYGLFDE-AVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 ++G E A + VV+ HIS+LR KL + L + + + R +GY Sbjct: 194 VWGYKPERASDSRVVDVHISRLRGKLEPDPLNPELILTARGMGY 237 >gi|314932970|ref|ZP_07840336.1| DNA-binding response regulator [Staphylococcus caprae C87] gi|313654289|gb|EFS18045.1| DNA-binding response regulator [Staphylococcus caprae C87] Length = 224 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 7/159 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---V 121 R +R S VP++ +S + + + G DD + KP + ++A++ AIYRR+ V Sbjct: 64 RKMRQESNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFGV 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R + V +D +G+ L + E ILE L+ + + V + + +A++ Sbjct: 124 EEKRTLSWQDTVVDLSKDSIQKGDKTIFLSKTEMIILEMLINKKNQIVTRDTLITALWD- 182 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DEA V +N + ++++LRKKL D +++K GY Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKLAEINMDDAIETKVGKGY 220 >gi|310817191|ref|YP_003965155.1| DNA-binding response regulator PetR [Ketogulonicigenium vulgare Y25] gi|308755926|gb|ADO43855.1| DNA-binding response regulator PetR [Ketogulonicigenium vulgare Y25] Length = 235 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 7/151 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE ++ R IRA VP++ ++ + ++G DD + KP +E+L R+ A+ Sbjct: 59 GENGIDFCRDIRARLGVPVLLLTARGETSDRISGLEAGADDYLPKPFEPKELLLRINAVL 118 Query: 117 RRLKVSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR V+ R T G R +D + + G + L E +++ L A G V++ Sbjct: 119 RRTPVAEARVPTHKVLHMGAARYDADRGELWLHGTLQRLTATEAQLMRVLAARAGSVVSR 178 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 T++ + E ++E V+ I++LR+KL Sbjct: 179 TELVEEM-SRGPEPLQERAVDVQITRLRRKL 208 >gi|260469831|ref|ZP_05813985.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259028402|gb|EEW29724.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 227 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 20/171 (11%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L L + IRA + P I ++ + ++ ++G DD + KP E+LAR+ A+ RR Sbjct: 60 LSLVKAIRAAGVRTPAIFLTSVGGIDDRVEGLEAGGDDYLVKPFAFSELLARINALGRRP 119 Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 L+V++ + RV GR ++Q RE +LE LM G+ + + Sbjct: 120 AAQEQKTVLRVADLEMDLIMRRVVRQGRPIDLQP-------REFSLLEVLMRGEGRVITR 172 Query: 171 TQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 T + ++ FD +VVE+HIS+LR K+ + + R GYS+ Sbjct: 173 TMLLERVWDFHFDP--RTSVVETHISRLRAKIDKPFETQLIHTVRNTGYSL 221 >gi|227329104|ref|ZP_03833128.1| DNA-binding transcriptional regulator BaeR [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 242 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 11/178 (6%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD 89 N + EW++ + S I L+ G L L R IR S VP+I ++ L Sbjct: 42 NGNDVVEWVRQHSP---SLILLDLMLPGCDGLTLCRTIRQFSNVPIIMVTARSEEIDRLL 98 Query: 90 FFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN------RAETGPIRVFSDGRDPEVQ 143 + G DD + KP RE++ RV + RR N+ + ET + + G Sbjct: 99 GLEIGADDYICKPFSPREVVVRVRTLLRRCGWQNDGLKAAEKTETA-LLIDKSGFQASYL 157 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 G+ L E R+L+ L GK ++ + +Y + V + ++SHI LR+KL Sbjct: 158 GQNLDLTPAEFRLLKTLSTEPGKVFSREALLDKLYDDY-RVVTDRTIDSHIKNLRRKL 214 >gi|239623920|ref|ZP_04666951.1| two-component system protein response regulator [Clostridiales bacterium 1_7_47_FAA] gi|239521951|gb|EEQ61817.1| two-component system protein response regulator [Clostridiales bacterium 1_7_47FAA] Length = 234 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 8/150 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S ++ +S + G DD V KP RE++ R+ A RR + Sbjct: 63 LEVCRQIRQFSYCSILFLSSKNDDVDKILGLSWGGDDYVTKPFSPREVVFRIKAQLRRQQ 122 Query: 121 VSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 GP+R+ + G+ L RE +L YLM N K ++K ++ Sbjct: 123 YQTASPLQEGTSLTVGPLRIDKESCRAYKGGQEIGLTGREYLLLTYLMENADKIISKERL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G + ++ +N + HI LR+K+ + Sbjct: 183 YEQVWGEY-SSICDNTIMVHIRHLREKIED 211 >gi|167745896|ref|ZP_02418023.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662] gi|167654411|gb|EDR98540.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662] Length = 224 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 3/162 (1%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LEL + IR + P++ ++ ++ + D G DD + KP E++ARV + RR Sbjct: 60 LELLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRK 119 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + +NR G + + + ++ + L +E +LEY++ N+ +++ QI + Sbjct: 120 PALVSNRLTIGDLVLDCESKEVTRADKKISLSSKEFMVLEYMLRNQNIVLSREQIEQHAW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D NVV+ +I LRKK+ G + + R +GY + Sbjct: 180 N-YDFEGGSNVVDVYIRYLRKKIDEGFGCKLIHTVRGVGYVL 220 >gi|149192632|ref|ZP_01870779.1| transcriptional regulator CpxR [Vibrio shilonii AK1] gi|148833534|gb|EDL50624.1| transcriptional regulator CpxR [Vibrio shilonii AK1] Length = 143 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 15/135 (11%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP-----IRVFSDGRDPEVQGEVFP 148 G DD + KP RE+LAR+ AI RR + A I+VF ++ QG++ Sbjct: 9 GADDYLPKPFSDRELLARIKAILRRTQSKPESATADCLSFDDIQVFPGKQEAHCQGQLLD 68 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKLRNK 204 L E +L Y + G+ + K + + G FD A V+ H+S LRKKL K Sbjct: 69 LTTTEFALLHYFVQKPGETLTKESLSLDVLGKRLSAFDRA-----VDMHVSNLRKKLPEK 123 Query: 205 LGFDP-VDSKRFLGY 218 P + + R GY Sbjct: 124 ADGKPRIKTLRGRGY 138 >gi|127514186|ref|YP_001095383.1| two component heavy metal response transcriptional regulator [Shewanella loihica PV-4] gi|126639481|gb|ABO25124.1| two component heavy metal response transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 238 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 88/168 (52%), Gaps = 7/168 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G ++LE R+ +S +P++ ++ SL+ ++ +SG DD + KP E+LARV + Sbjct: 72 GWQILEKIRL--NNSDIPVMFLTAKDSLEDKINGLESGADDYLVKPFAFAELLARVKTLL 129 Query: 117 RR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR ++ ++ +++ R + L +E +LE L+ ++G+ + ++ I Sbjct: 130 RRGTKQLQSDTLTLHGLKLDITKRRASREQTKLHLTNKEFSLLELLVRHQGEVLTRSFIA 189 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 S ++ + FD + NV++ I +LR K+ + + + R +GY +D Sbjct: 190 SQVWDMNFDS--DTNVIDVAIRRLRAKVDDPFSVKLIHTVRGMGYKLD 235 >gi|332828998|gb|EGK01669.1| hypothetical protein HMPREF9455_02050 [Dysgonomonas gadei ATCC BAA-286] Length = 233 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 6/136 (4%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 + +P+I ++ + L F G DD ++KP +E++ARV ++ +R + + A Sbjct: 77 NNIPIIFLTAKDTENDMLTGFSIGGDDYISKPFSIKEVVARVRSVLKRTENQTSAAHKNV 136 Query: 131 IRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + V + D + V EV L + E IL L+ N G+ ++T I + D V Sbjct: 137 LTVNNLEIDFDTKTVSVDKEVIELTKTEFNILVLLVQNTGRIFSRTDILDKAWK-DDGIV 195 Query: 186 EENVVESHISKLRKKL 201 E V+ HI++LRKK+ Sbjct: 196 LERTVDVHIARLRKKI 211 >gi|313606840|gb|EFR83490.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes FSL F2-208] gi|332312931|gb|EGJ26026.1| Response regulator [Listeria monocytogenes str. Scott A] Length = 246 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 12/119 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRL--------KVSNNRAET---GPIRVFSDGRDPEV 142 G DD + KP RE++AR+ AI RR +++ + T G +++ D + + Sbjct: 105 GADDYMTKPFSPREVVARIKAILRRTEGKAEIIEEITEDSEATILIGDLKILPDSYEVYL 164 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR K+ Sbjct: 165 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 222 >gi|283768370|ref|ZP_06341282.1| response regulator receiver domain protein [Bulleidia extructa W1219] gi|283104762|gb|EFC06134.1| response regulator receiver domain protein [Bulleidia extructa W1219] Length = 218 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S +P++ ++ + + +D F S D + KP + ARV ++ ++ Sbjct: 60 LEVLKKIREKSALPILMLTAFSDEEYKIDAFTSLADGYIEKPFSLPVLKARVDSLIKKHF 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E + V +++ + + +E IL+YL+ N G + +TQI ++ Sbjct: 120 GQIEKFEYKNVEVNFTSYTAKLKNKDVDINAKELEILKYLLDNEGHALTRTQIIDNVWKD 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL D + + R +GY ++ Sbjct: 180 TEEIPYDRVIDVYIKELRKKLE----LDCIVTIRNVGYKLE 216 >gi|226361427|ref|YP_002779205.1| OmpR family two-component response regulator [Rhodococcus opacus B4] gi|226239912|dbj|BAH50260.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] Length = 219 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 5/145 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R +RA S VP++ ++ ++ + G DD + KP E+LAR+ + +R + Sbjct: 58 LQVLRQLRAVSDVPVVILTARDDERSVVRGLRGGADDYLVKPARLAELLARLDVVTQRRR 117 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + AE G + V R+ EV G L +E +LE L+ G V++ Q+ A Sbjct: 118 ATGPSAEQTVTEGDVVVDLAAREVEVGGAPVTLTAKEFELLEVLVTRPGAAVSRQQLMDA 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++G A+ ++ H++ LR KL Sbjct: 178 VWGDAYVAISRT-LDVHMTGLRAKL 201 >gi|167769573|ref|ZP_02441626.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM 17241] gi|167668541|gb|EDS12671.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM 17241] Length = 224 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/200 (22%), Positives = 98/200 (49%), Gaps = 5/200 (2%) Query: 23 GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDY 81 G +++G ++ + + D++ ++ + G+ L + R +RA + +P++ ++ Sbjct: 24 GYAVDGCDNGDDAAYYLEQTPYDLAILDIMMPGRDG--LSILRGLRAAGRTLPVLLLTAL 81 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP-IRVFSDGRDP 140 ++ + D+G DD + KP E+LAR+ + RR T + + R Sbjct: 82 DAVGDRVSGLDAGADDYLTKPFAFDELLARIRVLLRRSSSDKAVVLTAEDLTMELSTRTV 141 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 G+ L +E ILEYL+ N+G +++ Q+ S ++ +D N+V+ ++ LR+K Sbjct: 142 RRAGQEITLSSKEYAILEYLLRNKGVVLSRAQLESHVWD-YDFEGGSNIVDVYVRYLRRK 200 Query: 201 LRNKLGFDPVDSKRFLGYSI 220 + + + + R +GY+I Sbjct: 201 IDDPFEKKLIQTVRGVGYTI 220 >gi|158422761|ref|YP_001524053.1| response regulator receiver [Azorhizobium caulinodans ORS 571] gi|158329650|dbj|BAF87135.1| response regulator receiver [Azorhizobium caulinodans ORS 571] Length = 238 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 5/131 (3%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 +G DD + KP E+LARV A+ RR + + G + + G+ PL Sbjct: 105 AGGDDYLPKPYAFTELLARVEALSRRGAPQAAETVYRVGDLELDRLAHRVARGGKEIPLQ 164 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209 RE R+LEYLM + G+ V +T + ++ FD + NV++ H+S+LR K+ Sbjct: 165 PREFRLLEYLMRHAGQVVTRTMLLENVWDYHFDP--QTNVIDVHVSRLRSKIDKGFDVPL 222 Query: 210 VDSKRFLGYSI 220 + + R GY + Sbjct: 223 IHTVRGAGYMV 233 >gi|126650368|ref|ZP_01722596.1| hypothetical protein BB14905_18480 [Bacillus sp. B14905] gi|126593018|gb|EAZ87000.1| hypothetical protein BB14905_18480 [Bacillus sp. B14905] Length = 231 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 78/149 (52%), Gaps = 9/149 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + + +P++ I+ + + + G DD + KP RE++AR+ I+RRL Sbjct: 63 LDICKQVTTTYNIPILMITAKSDITDKVIGLEYGADDYITKPFDLREVVARIRTIFRRLD 122 Query: 121 VSNN---RAETGPIRVFSDGRDPE----VQGEV-FPLPRRERRILEYLMANRGKRVAKTQ 172 +N+ + ++ IR + PE ++ ++ L +E +L L+ +GK +++ Sbjct: 123 QTNSLEKQEKSQDIRFKNILILPEERLVIKDDINIELTPKEYDLLMTLIGQKGKIFTRSE 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + ++G +D + V++HI +LRKKL Sbjct: 183 LLDLVWG-YDFVGDTRTVDTHIQRLRKKL 210 >gi|110803691|ref|YP_699201.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110684192|gb|ABG87562.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 223 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 8/187 (4%) Query: 27 EGFNSLEF---EEWLQSSAREDVS-AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82 EGFN LE EE L+ + V AI ++ K + L + R IR S P+I ++ Sbjct: 25 EGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDG-LAVCRNIREVSNTPIILLTAKS 83 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR--AETGPIRVFSDGRDP 140 + L ++ G DD + KP + +LA+ A+ RR N++ + + + + Sbjct: 84 QEEDKLLGYELGADDYMTKPFSPKVLLAKSKALLRRTGTLNDKNILDFNGLTINKLSHEV 143 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 ++ GE L +E +L YL +N G +++ +I ++G +D + V+++I +LR+K Sbjct: 144 KLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWG-YDYFGDIRTVDTNIKRLREK 202 Query: 201 LRNKLGF 207 L +K + Sbjct: 203 LLDKANY 209 >gi|326341835|gb|EGD65618.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli O157:H7 str. 1125] Length = 222 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 15/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G + E QS S + L E L Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60 Query: 62 E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L RI + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 NN+ E+ G + + R + GE L +E +L LM G V + +++ Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWIGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 IY +D N +E HI LR+K+G + + R GY + N Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219 >gi|229193368|ref|ZP_04320318.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228590169|gb|EEK48038.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] Length = 220 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 7/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++D S + + +G DD + KP E++ARV AI RR Sbjct: 57 EICRQIRLVKTTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSDC 116 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + E + +F D V+ GE L +RE +L +L+ N+ +++ + + Sbjct: 117 -NQQKEINFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQ 175 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ V NVV+ +I +RKKL+ + + + GYS+ Sbjct: 176 VWG-YNVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 218 >gi|226939159|ref|YP_002794230.1| BaeR [Laribacter hongkongensis HLHK9] gi|226714083|gb|ACO73221.1| BaeR [Laribacter hongkongensis HLHK9] Length = 236 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 10/170 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L R +R+ S +P+I ++ L + G DD + KP RE++ARV + RR + Sbjct: 67 LSLCRALRSFSSLPVIMLTARVEESDRLLGLEIGADDYICKPFSPREVVARVRTVLRRSQ 126 Query: 121 VSNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + ++ P + D G L R E R+LE L+ + + ++ Q Sbjct: 127 PAAAAPAAAMPADSQATPFVLDPDTLTASYHGHELELTRVEFRLLEVLVDSPRRVFSRDQ 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +Y V + V+SHI LRKKL + DP+ S +GY + Sbjct: 187 LLGHVYD-DHRVVSDRTVDSHIKNLRKKLAQVQPDADPIRSVYGVGYKFE 235 >gi|213428273|ref|ZP_03361023.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 173 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L R IR S +P++ ++ L + G DD + KP RE++ARV I RR K Sbjct: 3 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 62 Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + AE+ P+ + G+ L E R+L+ L GK ++ Q+ + Sbjct: 63 PQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNH 121 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203 +Y + V + ++SHI LR+KL + Sbjct: 122 LYDDY-RVVTDRTIDSHIKNLRRKLES 147 >gi|168466206|ref|ZP_02700076.1| response regulator [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631460|gb|EDX50020.1| response regulator [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 240 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K + AE+ P+ + G+ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|164520392|gb|ABY60251.1| PhoP [Listeria monocytogenes] Length = 233 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 12/119 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRL--------KVSNNRAET---GPIRVFSDGRDPEV 142 G DD + KP RE++AR+ AI RR +++ + T G +++ D + + Sbjct: 92 GADDYMTKPFSPREVVARIKAILRRTEGKAEIIEEITEDSEATILIGDLKILPDSYEVYL 151 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR K+ Sbjct: 152 QDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 209 >gi|77361118|ref|YP_340693.1| transcriptional regulatory protein in two-component regulatory system with baeS [Pseudoalteromonas haloplanktis TAC125] gi|76876029|emb|CAI87251.1| Transcriptional regulatory protein in two-component regulatory system with baeS [Pseudoalteromonas haloplanktis TAC125] Length = 226 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 3/145 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ +EL + IR S VP+I +S L + G DD + KP + E++ARV AI Sbjct: 58 GQSGIELCKAIRQFSNVPIIMVSAKVEEIDRLLGLELGADDYICKPFSYAELVARVKAIL 117 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RRL +N +T +++ + + L E ++ + L N + ++ + Sbjct: 118 RRL--NNVEPKTNVMQLDESTYSVKYKAVSIELTNVEFQLFKPLFNNPNRIYSRDSLMDT 175 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 +Y V + ++SHI KLRKKL Sbjct: 176 MYA-DQRIVSQRTIDSHIKKLRKKL 199 >gi|152976855|ref|YP_001376372.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025607|gb|ABS23377.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 235 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118 R IR+ S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRSVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N+ + +F E QG+ L + E +LE LM + V + ++ A Sbjct: 125 SAAENDCLGVNGLLLFPSQHIIEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225 >gi|15675804|ref|NP_269978.1| putative two-component response regulator [Streptococcus pyogenes M1 GAS] gi|19746916|ref|NP_608052.1| two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21911269|ref|NP_665537.1| putative two-component response regulator [Streptococcus pyogenes MGAS315] gi|28896642|ref|NP_802992.1| two-component response regulator [Streptococcus pyogenes SSI-1] gi|50915071|ref|YP_061043.1| two-component response regulator [Streptococcus pyogenes MGAS10394] gi|56808485|ref|ZP_00366226.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pyogenes M49 591] gi|71904371|ref|YP_281174.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|71911538|ref|YP_283088.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|94989360|ref|YP_597461.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94991300|ref|YP_599400.1| two-component response regulator [Streptococcus pyogenes MGAS10270] gi|94993250|ref|YP_601349.1| two-component response regulator [Streptococcus pyogenes MGAS2096] gi|94995212|ref|YP_603310.1| two-component response regulator [Streptococcus pyogenes MGAS10750] gi|139474488|ref|YP_001129204.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|209560154|ref|YP_002286626.1| Two-component system response regulator [Streptococcus pyogenes NZ131] gi|13623031|gb|AAK34699.1| putative two-component response regulator [Streptococcus pyogenes M1 GAS] gi|19749163|gb|AAL98551.1| putative two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21905483|gb|AAM80340.1| putative two-component response regulator [Streptococcus pyogenes MGAS315] gi|28811896|dbj|BAC64825.1| putative two-component response regulator [Streptococcus pyogenes SSI-1] gi|50904145|gb|AAT87860.1| Two-component response regulator [Streptococcus pyogenes MGAS10394] gi|71803466|gb|AAX72819.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|71854320|gb|AAZ52343.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|94542868|gb|ABF32917.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94544808|gb|ABF34856.1| Two-component response regulator [Streptococcus pyogenes MGAS10270] gi|94546758|gb|ABF36805.1| Two-component response regulator [Streptococcus pyogenes MGAS2096] gi|94548720|gb|ABF38766.1| Two-component response regulator [Streptococcus pyogenes MGAS10750] gi|134272735|emb|CAM31008.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|209541355|gb|ACI61931.1| Two-component system response regulator [Streptococcus pyogenes NZ131] Length = 217 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 3/141 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP+I ++ T L F+ + D V KP ++ R+ + R+ Sbjct: 61 LEVLKTIRKTSDVPIIMLTALDDEYTQLVSFNHLISDYVTKPFSPLILIKRIENVL-RVS 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + G + V QG + L ++E I++YL K V + Q+ I+G Sbjct: 120 TPDEKRQIGDLLVDETEHSVYWQGTLVKLTKKEYDIIDYLAKRHQKIVTRDQLMDDIWGY 179 Query: 181 FDEAVEENVVESHISKLRKKL 201 ++ V+++HI LRKK+ Sbjct: 180 --SELDTRVLDNHIKNLRKKM 198 >gi|326797945|ref|YP_004315764.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326548709|gb|ADZ77094.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 224 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 6/134 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D G DD ++KP + E+ +R+ AI RR K+ + G RV R L Sbjct: 91 LDLGADDYLSKPFYLLELQSRMQAIARRKFKLQDELIPVGDFRVDLPKRLILFNDNPIDL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE---NVVESHISKLRKKLRNKLG 206 R+E +L YL+ ++ + + + Q+ I+G + AV++ N +++HI +RKKL Sbjct: 151 SRKEFDLLSYLLLHKNRVLTRMQLSEHIWGSY--AVDDNDSNYIDAHIKNIRKKLGQCAS 208 Query: 207 FDPVDSKRFLGYSI 220 + +++ R +GY I Sbjct: 209 IEWLETVRGVGYRI 222 >gi|262039182|ref|ZP_06012502.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii F0264] gi|261746798|gb|EEY34317.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii F0264] Length = 196 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 70/131 (53%), Gaps = 2/131 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D G DD + KP E+ AR+ A+ RR S+N+ E + + + + G+ L Sbjct: 62 LDMGADDYLIKPFDFNELSARIRAVVRRKFGNSSNKIEVKDLVLDTTEKSVTRAGKKIDL 121 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E ILEYL+ ++ + +++ QI ++G ++ + N+++ I +RKK+ + G Sbjct: 122 TGKEYEILEYLVQSKNRILSRDQIIERVWG-YEYEGDSNIIDVLIKNIRKKIDIEDGKQI 180 Query: 210 VDSKRFLGYSI 220 + +KR +GY + Sbjct: 181 IFTKRGMGYVV 191 >gi|226228285|ref|YP_002762391.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226091476|dbj|BAH39921.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 231 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 78/149 (52%), Gaps = 7/149 (4%) Query: 57 GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G + + R +RA VP++ ++ ++ + D+G DD + KP H E+ ARV A+ Sbjct: 56 GMDGIAICRGLRARQMAVPILLLTARDAVDERIQGLDAGADDYLTKPFHFGELTARVRAL 115 Query: 116 YRRLKVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR+ V + G + + + + G + PL RE +L YL + G+ V++ ++ Sbjct: 116 LRRMSVVLPSTMAVGDLEIDTRLQQARRDGALLPLTAREFTLLAYLARHAGRIVSRGELA 175 Query: 175 SAIYGLFDEAVE--ENVVESHISKLRKKL 201 ++ DE + N+++ ++S+LR+K+ Sbjct: 176 EHVW---DENHDPNANLIDVYVSRLRRKV 201 >gi|218458443|ref|ZP_03498534.1| two-component response regulator protein [Rhizobium etli Kim 5] Length = 183 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 5/131 (3%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLP 150 +G DD + KP E+LARV + RR G + + + G+ PL Sbjct: 51 AGGDDYLPKPYAFSELLARVEVLGRRKGTPEQDVIYRVGDLELDRLSHEVRRGGKEIPLQ 110 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209 RE R+LEYLM N G+ V +T + ++ FD + NV++ H+S+LR K+ Sbjct: 111 PREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDP--QTNVIDVHVSRLRSKIEKDFSQPL 168 Query: 210 VDSKRFLGYSI 220 + + R GY I Sbjct: 169 LKTIRGAGYMI 179 >gi|209695438|ref|YP_002263367.1| putative transcriptional regulator [Aliivibrio salmonicida LFI1238] gi|208009390|emb|CAQ79664.1| putative transcriptional regulator [Aliivibrio salmonicida LFI1238] Length = 219 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 22/159 (13%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSN 123 +P+I +S +L +D ++G DD + KP E++AR+ RR LK+ N Sbjct: 72 NIPVIILSARDTLTQRIDGLNAGADDYLTKPFELPELIARLRVQLRRASGSASSVLKIGN 131 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182 +T ++ GE L E +++ Y M N+ K +++T++ IY FD Sbjct: 132 LSLDTCSSKIVW-------YGETIELTALEYKVVAYFMHNKEKVISRTELVEHIYKQDFD 184 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + N +E I ++R+KL + + + R LGY ++ Sbjct: 185 R--DSNTIEVFIGRIRRKLSPSV----IKTVRGLGYQLN 217 >gi|187928801|ref|YP_001899288.1| winged helix family two component heavy metal response transcriptional regulator [Ralstonia pickettii 12J] gi|241114328|ref|YP_002973803.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12D] gi|187725691|gb|ACD26856.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|240868901|gb|ACS66559.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12D] Length = 228 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 5/156 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRA 126 A VP++ ++ S+ + + G DD + KP E+LARV + RR VS++R Sbjct: 69 AEQAVPVLFLTARDSVADRVKGLEMGADDYLVKPFAFAELLARVRTLLRRGTGAVSSDRI 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 + + + R G+ PL +E +LE L+ RG+ + ++ I S ++ + FD Sbjct: 129 QVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVWDMNFDS-- 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NV++ I +LR K+ + + + R +GY ++ Sbjct: 187 DTNVIDVAIRRLRAKIDDHFEPKLIQTVRGMGYVLE 222 >gi|119476351|ref|ZP_01616702.1| two-component response regulator PhoB [marine gamma proteobacterium HTCC2143] gi|119450215|gb|EAW31450.1| two-component response regulator PhoB [marine gamma proteobacterium HTCC2143] Length = 236 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 109/234 (46%), Gaps = 30/234 (12%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIG- 55 +++DD A +++ I + + + GFN E + ++ ++ D+ ++ L G Sbjct: 6 ILIVDDEAPIRE-MIRM----SLDMAGFNCREAADTREAYRVIADSKPDLVLLDWMLPGG 60 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G ++L R + +P+I ++ + D G DD + KP RE+L+R+ A+ Sbjct: 61 SGIELLRRLRKEELTADLPVIMLTAKTDEDNKIQGLDVGADDYITKPFAPREMLSRIKAL 120 Query: 116 YRR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 RR ++V + + RV+ D R ++ F R+L + M ++ + Sbjct: 121 LRRTSTGIGGSVIEVQGLKLDISSHRVYIDTRPVDMGPTEF-------RLLSFFMTHQER 173 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGY 218 ++ Q+ ++G + VEE V+ HI +LRK L ++ G + V + R GY Sbjct: 174 AYSRGQLLDHVWG-GNVYVEERTVDVHIRRLRKALESEGGCYNECVQTVRGTGY 226 >gi|152998395|ref|YP_001343230.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150839319|gb|ABR73295.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 236 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 55/229 (24%), Positives = 108/229 (47%), Gaps = 25/229 (10%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGKG 57 ++IDD + +++ IA+ + + G+ LE E Q+ R D+ ++ + G Sbjct: 12 LIIDDESSIRE-MIAI----ALEMAGYEYLEAENIQQAHEIIVDHRPDLILVDWMM--PG 64 Query: 58 EKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 +EL R ++ +++P+I ++ + + G DD + KP RE++AR+ A Sbjct: 65 GSGIELTRRLKKDTTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKA 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVA 169 + RR + + PI + DP Q + E R+L++LM ++ + + Sbjct: 125 VLRR---ATPQGVDEPIEIEGLTLDPISQRVTIGSRPLDMGPTEYRLLKFLMTHQERAYS 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + Q+ ++G + VEE V+ HI +LRK + + F + + R GY Sbjct: 182 RAQLLDQVWG-GNVYVEERTVDVHIRRLRKAIGSTHDF-LIQTVRGTGY 228 >gi|117619332|ref|YP_854542.1| KDP operon transcriptional regulatory protein KdpE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560739|gb|ABK37687.1| KDP operon transcriptional regulatory protein KdpE [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 227 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 87/174 (50%), Gaps = 19/174 (10%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G +VL+ IR H Q P++ +S S Q + D+G +D ++KP E++AR+ Sbjct: 58 GDGIQVLQ---AIREHHQHPVLVLSARDSEQEKVRLLDAGANDYMSKPFGIGEMMARIRV 114 Query: 115 IYR-RLKVSNNRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + R R VS+ P + + S + E PL R+E +L+ L+ + GK V + Sbjct: 115 LLRQRAGVSSGEQRHFPQCGLTLDSSSHRVTLGEEEVPLSRKEFALLQALVCHPGKLVLQ 174 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLR-KKLRNKLGFDP-----VDSKRFLGY 218 TQ+ + I+G + ++H ++ LR KLG +P ++++ +GY Sbjct: 175 TQLLNDIWG------PSHKEDTHYLRIVIASLRKKLGDNPQQPTLIETESGIGY 222 >gi|24380274|ref|NP_722229.1| response regulator GcrR for glucan-binding protein C [Streptococcus mutans UA159] gi|290579753|ref|YP_003484145.1| response regulator GcrR for glucan-binding protein C [Streptococcus mutans NN2025] gi|24378286|gb|AAN59535.1|AE015017_1 response regulator GcrR for glucan-binding protein C [Streptococcus mutans UA159] gi|6174678|dbj|BAA85986.1| gcrR [Streptococcus mutans] gi|254996652|dbj|BAH87253.1| response regulator GcrR for glucan-binding protein C [Streptococcus mutans NN2025] Length = 230 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 7/168 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ +I I+ S+ + D G D + KP E+LARV AI+RR + Sbjct: 63 EVIRRLQLEKTTYVIIITARDSIMDIVTGLDRGADGYIVKPFAIEELLARVRAIFRRQDI 122 Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + D R GE PL +RE +L L+ N + + + ++ + Sbjct: 123 EKAKHSSKNDTTYRDLKLDVHNRAAIRNGETIPLTKREFDLLNALVENINQVMTREELLA 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ +D+ E NVV+ +I LR K+ + + R +GY I N Sbjct: 183 RVWK-YDQEAETNVVDVYIRYLRGKIDVPGKESYIQTVRGMGYIIREN 229 >gi|254249049|ref|ZP_04942369.1| Response regulator [Burkholderia cenocepacia PC184] gi|124875550|gb|EAY65540.1| Response regulator [Burkholderia cenocepacia PC184] Length = 221 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 20/215 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIR 68 L + G+ DG + G +E R D+ ++A L G G VL R +R Sbjct: 20 LARLGHAVDLETDGATANGLLRVE---------RFDLVVLDANLPGMDGFTVL---RHLR 67 Query: 69 AH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 A S P++ ++ ++ + G DD + KP +RE+ ARV A+ RR N Sbjct: 68 ASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHANDVL 127 Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAV 185 T G + + R E+ G+ L R+E +LE ++A+R +R+ +K ++ + ++ +E Sbjct: 128 TLGGLVIDRSSRLAELDGQPLSLSRQEFALLE-ILASRPQRIFSKEELLNQLFSFGNEPT 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N VE +++++RKKL+ + + R +GY I Sbjct: 187 -ANAVEQYVTRVRKKLQGS--SVEIRTARGMGYQI 218 >gi|306829564|ref|ZP_07462754.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|304428650|gb|EFM31740.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] Length = 252 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 12/154 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP+I +S S + + G DD V KP +RE+ ARV A+ RR Sbjct: 78 LEVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 137 Query: 121 -VSNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 VS + E+ G + + D + GE L RE +L +L ++ G+ + Sbjct: 138 LVSVDSQESDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 197 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ I +LR+K+ + Sbjct: 198 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 230 >gi|326792369|ref|YP_004310190.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543133|gb|ADZ84992.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 226 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 3/137 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124 +R + P+I I+ + L ++ G DD V KP + A+V ++ +R K + + Sbjct: 67 VRLRYETPIIFITAKSDEEDQLYGYELGADDYVTKPFSLGVLYAKVNSLIKRAKGTIIED 126 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + + I + + V GE L E R+L Y M N+ + + + Q+ ++G +D Sbjct: 127 KLKVNDICIDCKKLEVTVGGEEIKLAPMEYRMLVYFMRNKNQVITRDQLIVRLWG-YDFE 185 Query: 185 VEENVVESHISKLRKKL 201 + V+++H+ KLRK L Sbjct: 186 GNDRVIDTHVKKLRKAL 202 >gi|190350980|gb|ACE75886.1| CovR [Streptococcus pyogenes] Length = 228 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+L R+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLVRIRAIFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|115375995|ref|ZP_01463242.1| putative two component response regulator protein [Stigmatella aurantiaca DW4/3-1] gi|115366994|gb|EAU65982.1| putative two component response regulator protein [Stigmatella aurantiaca DW4/3-1] Length = 244 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 7/171 (4%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 E L + R + L+ G LE+ R +R S VP+I ++ + ++G Sbjct: 50 EGLAEAGRHAYDVLLLDLMLPGRDGLEVCRELRTRSDVPIIMVTARGEEIDRVLGLETGA 109 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLP 150 DD + KP RE+LAR+ A RR + N P+ V DP + G+ L Sbjct: 110 DDYLPKPYSSRELLARIRAQVRRAR-GNAGPSLQPLNVGRLQMDPRSLTAVLNGKTLSLT 168 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E +L L G+ +++ Q+ I G DE + + ++ HI +LR+KL Sbjct: 169 SYEFNLLRVLAERAGRVLSREQLLDLIKGSADEVFDRS-IDVHIFRLRQKL 218 >gi|82546448|ref|YP_410395.1| DNA-binding transcriptional regulator BasR [Shigella boydii Sb227] gi|81247859|gb|ABB68567.1| transcriptional regulatory protein [Shigella boydii Sb227] gi|320183598|gb|EFW58442.1| Transcriptional regulatory protein basR/pmrA [Shigella flexneri CDC 796-83] gi|332087317|gb|EGI92446.1| transcriptional regulatory protein basR/pmrA [Shigella boydii 3594-74] Length = 222 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 15/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G + E QS S + L E L Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60 Query: 62 E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L RI + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 NN+ E+ G + + R + GE L +E +L LM G V + +++ Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 IY +D N +E HI LR+K+G + + R GY + N Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYMLVAN 219 >gi|309972896|gb|ADO96097.1| Probable two-component regulator,transcriptional regulatory component QseB [Haemophilus influenzae R2846] Length = 221 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNRAET 128 H VP++ ++ +L + SG DD + KP E+ AR+ A I RR ++ E Sbjct: 70 HQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYGHHHSVIEQ 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 +++ + R + + L RE ++LE M N+ + +++T I + +DE + Sbjct: 130 SGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRTSIEEKLSS-WDEEISSG 188 Query: 189 VVESHISKLRKKL 201 ++ HI LR+KL Sbjct: 189 ALDVHIYNLRQKL 201 >gi|296133811|ref|YP_003641058.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032389|gb|ADG83157.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 235 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 17/172 (9%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ R +R + +P+I ++ + + G DD V KP RE++ARV A R Sbjct: 61 LEVCRTLRKKPETADIPVIMVTAKSDEMDKIIGLELGADDYVTKPFSPRELVARVKARLR 120 Query: 118 R----LKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 R +K ++ + E GP+ V + + GE L +E +L L+ N GK + Sbjct: 121 RRTGLIKHADRKVEEEIAYGPLVVRPARYEVFLNGEKLDLTLKEYELLVLLINNPGKVFS 180 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR---NKLGFDPVDSKRFLGY 218 + + S I+G FD + V+ HI LR+K+ ++ GF +++ R +GY Sbjct: 181 RDFLLSTIWG-FDYTSDTRTVDVHIYHLRQKIERDPSQPGF--IETVRGVGY 229 >gi|228908966|ref|ZP_04072796.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228850688|gb|EEM95512.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----V 121 IR +P+I +S + SG DD ++KP + E++ARV + RR K + Sbjct: 68 IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTSI 127 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N++ E G + V +D V+G+ L +E ILE L N+G ++ +I+ A++ Sbjct: 128 EHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIYEAVWK 187 Query: 180 -LFDEAVEENVVESHISKLRKKL 201 +F ++ +N V HI+K+R K+ Sbjct: 188 EVFYKS--DNTVMVHITKIRDKI 208 >gi|256823584|ref|YP_003147547.1| winged helix family two component transcriptional regulator [Kangiella koreensis DSM 16069] gi|256797123|gb|ACV27779.1| two component transcriptional regulator, winged helix family [Kangiella koreensis DSM 16069] Length = 227 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 21/192 (10%) Query: 14 GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQ 72 GYI + DG+S G N L + + D ++ L G G + + R A S Sbjct: 26 GYIVDYAMDGIS--GLN-------LAKNNQYDALILDVMLPGMDGFTICQRIRQ-EAQSD 75 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P++ ++ L LD FD+G DD + KP E+ AR+ AI RR K ++ P+ Sbjct: 76 IPILMLTARDQLSDKLDGFDAGADDYLIKPFDFEELDARLNAIIRRHK---GELDSKPLV 132 Query: 133 VFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 + DP+ QG+ L IL+ LM + V + ++ ++G D Sbjct: 133 IHDLELDPKTLQVKRQGQKLKLSPTGLHILKLLMRKSPEVVTREELERELWG--DLVPNS 190 Query: 188 NVVESHISKLRK 199 +V+ SH+ LRK Sbjct: 191 DVLRSHLYNLRK 202 >gi|182416533|ref|ZP_02947960.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237668894|ref|ZP_04528878.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379605|gb|EDT77087.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237657242|gb|EEP54798.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 234 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/212 (23%), Positives = 103/212 (48%), Gaps = 18/212 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVS-AIEAFLIGKGEK 59 ++++D + DG + G ++ + +N +E E ++ +E + AI ++ K + Sbjct: 6 ILIVEDEKEICDGIEIYLKNQGYTVFKAYNGIEGLEIIE---KEKIHLAIVDIMMPKMDG 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 + + ++ R P+I +S + + G DD V KP + E++ARV + RR Sbjct: 63 ITMVMKL-REQHDFPVIMLSAKSEEMDKIMGLNIGADDYVTKPFNPMELIARVNSQLRRY 121 Query: 119 ---LKV-SNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 LKV NN +T G I + +D ++ V G++ + +E IL LM N G+ + Sbjct: 122 AKYLKVLKNNEKKTNLFVVGGIELNTDTKEVTVDGDIVKMTPKEFNILHLLMKNPGRVFS 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +I+ ++ ++A+ + H+ +R+K+ Sbjct: 182 AEEIYERVWK--EDAISTETIMVHVRNIREKI 211 >gi|126698400|ref|YP_001087297.1| two-component response regulator [Clostridium difficile 630] gi|254974439|ref|ZP_05270911.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255091831|ref|ZP_05321309.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255099933|ref|ZP_05328910.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255305822|ref|ZP_05349994.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|255313566|ref|ZP_05355149.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255516250|ref|ZP_05383926.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255649348|ref|ZP_05396250.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|306519438|ref|ZP_07405785.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|115249837|emb|CAJ67654.1| Two-component response regulator [Clostridium difficile] Length = 230 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 17/177 (9%) Query: 42 AREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101 +++D + ++ G E IR +S +P++ ++ + + +G DD + K Sbjct: 42 SKQDYQLVVLDVMMPGMDGFETMEQIRKYSSIPILMLTSKSDNYSKVHGLRAGADDYLTK 101 Query: 102 PIHHREILARVAAIYRRLKVSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERR 155 P E ARV ++ RR N + E F D GE LP +E Sbjct: 102 PFEITEFTARVLSLIRRYTRFNPKNEEPQQLSFKGLLIDLDQHTVTTNGEPMLLPPKEFG 161 Query: 156 ILEYLMANRGKRVAKTQIFSAIYG---LFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +L Y ++GK + K QI+ A++G ++D +S+I + +LR K+ DP Sbjct: 162 VLLYCARHQGKILTKQQIYEAVWGEPYVYD--------DSNIMAIISRLRKKIELDP 210 >gi|73540232|ref|YP_294752.1| two component transcriptional regulator [Ralstonia eutropha JMP134] gi|72117645|gb|AAZ59908.1| two component transcriptional regulator, winged helix family [Ralstonia eutropha JMP134] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 5/163 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ + +RA + +P++ ++ + + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLKRLRARGAMLPVLILTAADGVDERVKGLDLGADDYMAKPFALSELEARVRALVRRG 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+ GR + ++ L RE +LE L+ G+ V+K Q+ + Sbjct: 120 AGGGATLMRHGPLAFDQVGRIAYMNEQMLDLSAREVGLLEILLTRCGRLVSKEQLVDHLC 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E ++ +LRKK+ ++G + + R LGY ++ Sbjct: 180 E-WGEEVSNNAIEVYVHRLRKKI--EVGGIRIATVRGLGYCLE 219 >gi|322517438|ref|ZP_08070311.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322123920|gb|EFX95479.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ A +RR + Sbjct: 63 EVTRRLQQEKNTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-------EVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + D + +VQ E PL +RE +L L++N + + + ++ Sbjct: 123 EATKNAPAKASTYRDLK-LDVQNRAVIRGDEAIPLTKREFDLLNTLLSNMNQVMTREELL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D+ +E NVV+ +I LR K+ + + R +GY I Sbjct: 182 LQVWK-YDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226 >gi|322389965|ref|ZP_08063505.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321143401|gb|EFX38839.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 233 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 102/224 (45%), Gaps = 22/224 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 + K+GY L DG E L+ A E+ I L+ LE+ R IR Sbjct: 21 MAKEGYEVLTAFDG-----------REALEVFAAENPDIIILDLMLPEIDGLEVARTIRK 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-----NN 124 S VP+I +S + + + G DD V KP +RE+ ARV A+ RR + + N Sbjct: 70 TSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEFAADPQLEN 129 Query: 125 RAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 A+T G + + D + + L RE +L +L + G+ + + + ++G Sbjct: 130 EADTEIVIGDLHILPDAFLVQKGNKELDLTHREFELLYHLATHVGQVMTREHLLETVWG- 188 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223 +D + V+ + +LR+K+ + G + + ++R +GY + N Sbjct: 189 YDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232 >gi|307130078|ref|YP_003882094.1| DNA-binding response regulator in two-component regulatory system with KdpD [Dickeya dadantii 3937] gi|306527607|gb|ADM97537.1| DNA-binding response regulator in two-component regulatory system with KdpD [Dickeya dadantii 3937] Length = 173 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 18/160 (11%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R S +P+I +S Q ++ D+G DD + KP E+LARV RR S Sbjct: 13 RDLRQWSAIPVIVLSARTDEQDKINALDAGADDYLTKPFGIGELLARVRVALRRF--STT 70 Query: 125 RAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ET P+ FS+ V +V L E R+L L+AN GK + + Q+ + ++ Sbjct: 71 QQET-PLITFSNVTVDLVNRQVIRDQQELHLTPIEFRLLSTLLANPGKVLTQRQLLNQVW 129 Query: 179 GLFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216 G N VE SH ++ LR KL DP + FL Sbjct: 130 G-------PNAVEHSHYLRIYMGHLRQKLEDDPARPRHFL 162 >gi|225575152|ref|ZP_03783762.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM 10507] gi|225037619|gb|EEG47865.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM 10507] Length = 222 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 2/138 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSN 123 +I R S +P+I ++ S L +D G DD + KP + +LA+ A+ RR + Sbjct: 65 KIAREMSNLPIIMLTAKGSEDDKLKGYDLGADDYMTKPFSPKVLLAKANALLRRSSLLPA 124 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G I + V G+ L +E +L + M N + ++ Q+ + I+G +D Sbjct: 125 DTINAGKISLVPASHKVFVNGKEIVLTHKEYELLYFFMVNPEQIFSREQLLNRIWG-YDF 183 Query: 184 AVEENVVESHISKLRKKL 201 V++HI LR+KL Sbjct: 184 EGTTRTVDTHIKTLRQKL 201 >gi|221195251|ref|ZP_03568307.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC 49626] gi|221185154|gb|EEE17545.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC 49626] Length = 241 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 17/215 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE--FEEWLQSSAREDVSAIEAFLIG-KGE 58 ++++D +++D A + ++ G + EE+ + S D+ ++ L GE Sbjct: 8 ILIVEDETVIRDAVSAYLERENYAVRGVGDGQSAVEEFQKHSF--DLVILDLMLPKLSGE 65 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +V R IR S VP+I ++ ++ + + G DD + KP RE++ARV A++RR Sbjct: 66 RVC---RAIRDVSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFRR 122 Query: 119 L-KVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K S + E G + + G ++GE L E ++L L G+ ++ ++ Sbjct: 123 AHKESEPQPEVLEYGALTIDISGHKILIRGEEVDLTASEFKLLTTLARYPGRVYSRMELV 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 + G +D E ++SH+ K LR KLG DP Sbjct: 183 EKVLG-YDFEGYERTIDSHV----KNLRAKLGDDP 212 >gi|154498462|ref|ZP_02036840.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC 29799] gi|150272530|gb|EDM99715.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC 29799] Length = 238 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 6/140 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-----KV 121 IR S VP+I ++ + F+ G DD + KP + E+ ARV A+ RR K Sbjct: 77 IREFSNVPIIMLTARSEDADKIIGFECGADDYITKPFNILELKARVRALLRRAGMAAQKE 136 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R G I + +D R L +E ++E LM N G+ ++ + + ++G + Sbjct: 137 KKARLTAGHIVIDADERSAWKGETPVDLTAKEFDLIELLMRNPGRVYSRENLLNVVWG-Y 195 Query: 182 DEAVEENVVESHISKLRKKL 201 + A + V+ H+ +LR+KL Sbjct: 196 EYAGDYRTVDVHVRRLREKL 215 >gi|149374614|ref|ZP_01892388.1| Two component Transcriptional regulator, Winged helix family protein [Marinobacter algicola DG893] gi|149361317|gb|EDM49767.1| Two component Transcriptional regulator, Winged helix family protein [Marinobacter algicola DG893] Length = 245 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 15/228 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLE----GFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57 ++++D+ + + G+D L+ G +L L ++ DV ++ L G Sbjct: 15 LLIVEDQVDLAENLFEFLGEDRYCLDFAADGLTALH----LLATQSYDVIVLDLML--PG 68 Query: 58 EKVLELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 ++ R IR Q P+I ++ +L FD G DD + KP RE+ R+ A+ Sbjct: 69 VNGFDVCRRIREDLRCQTPIILMTSLSALNDKEKGFDCGADDYLVKPFELRELQLRIEAL 128 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +RR + G IR + E+ G L R+ E LM + T + Sbjct: 129 HRRHSPLKPVLQAGEIRFDPGTLEVELHGLKTTLSGTSSRLFELLMRAYPNFLGHTTLTD 188 Query: 176 AIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++G + +A E N + + + LRK L+ LG + + GY ++ Sbjct: 189 ALWGGARYGDA-EGNNLRTQVYTLRKSLQGSLGNGLIKTIHGRGYRLE 235 >gi|146307023|ref|YP_001187488.1| two component transcriptional regulator [Pseudomonas mendocina ymp] gi|145575224|gb|ABP84756.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 222 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/220 (24%), Positives = 101/220 (45%), Gaps = 10/220 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +L++D + D A G +++ + +S D+ ++ L GK G +V Sbjct: 3 LLLVEDHVPLADELTASLTRQGYAVDWLADGRDAAYQGASEPYDLIILDLGLPGKPGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ R P++ ++ S ++ +G DD + KP H E+ R+ A+ RR Sbjct: 63 LQEWRA--GGLSTPVLVLTARGSWAERIEGLKAGADDYLTKPFHPEELALRIQALLRRAH 120 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N+ + + + R G EV L E R+L Y M + G+ ++K+ + +Y Sbjct: 121 GLANQPQLEAAGLQLDESRQCVTSGDEVIDLTAAEFRLLRYFMLHPGQILSKSHLADHLY 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E + NV+E H++ +LR KLG + ++++R GY Sbjct: 181 DGETER-DSNVIEVHVN----RLRGKLGRNVIETRRGQGY 215 >gi|146300485|ref|YP_001195076.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154903|gb|ABQ05757.1| two component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 226 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 4/133 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SNNRAET 128 + P+I ++ + ++ L FDSG DD + KP H E+ AR++++ RR ++ + + Sbjct: 72 KTPIIMLTAFSEIEDKLASFDSGADDYLVKPFHFEELYARISSLLRRKEIPQQTEKKIII 131 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 + + D GE L +E +++ L +GK ++K I ++ E +N Sbjct: 132 EDLEILEDEMKVLRSGEEIKLTPKEFKLILILAHAKGKVLSKQFIAEKLWDYHIET-NQN 190 Query: 189 VVESHISKLRKKL 201 +E +I+ LRKK+ Sbjct: 191 TIEVYINFLRKKI 203 >gi|30265130|ref|NP_847507.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530640|ref|YP_021989.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49187941|ref|YP_031194.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65317076|ref|ZP_00390035.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165869987|ref|ZP_02214644.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167641774|ref|ZP_02400016.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170689385|ref|ZP_02880578.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|190569222|ref|ZP_03022118.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227817862|ref|YP_002817871.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229603464|ref|YP_002869323.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686468|ref|ZP_05150327.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724467|ref|ZP_05186251.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254735675|ref|ZP_05193382.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254744239|ref|ZP_05201919.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254750967|ref|ZP_05203006.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254756991|ref|ZP_05209019.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259807|gb|AAP28993.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47505788|gb|AAT34464.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49181868|gb|AAT57244.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164714310|gb|EDR19830.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510257|gb|EDR85661.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170666681|gb|EDT17451.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|190559662|gb|EDV13651.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227004971|gb|ACP14714.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229267872|gb|ACQ49509.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 225 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 7/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++D S + + +G DD + KP E++ARV AI RR Sbjct: 62 EICRQIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRR-SG 120 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + ET + +F D V+ G+ L +RE +L +L+ N+ +++ + + Sbjct: 121 CNQQHETTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ V NVV+ +I +RKKL+ + + + GYS+ Sbjct: 181 VWG-YNVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 223 >gi|310814679|ref|YP_003962643.1| phosphate regulon transcriptional regulatory protein PhoB [Ketogulonicigenium vulgare Y25] gi|308753414|gb|ADO41343.1| phosphate regulon transcriptional regulatory protein PhoB [Ketogulonicigenium vulgare Y25] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 14/173 (8%) Query: 57 GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +E+ R I+A ++ +P+I +S + ++G DD V KP E+LAR Sbjct: 61 GVSGIEICRQIKARAETRAIPVIMLSARSEEGDKVRGLETGADDYVTKPYSITELLARAR 120 Query: 114 AIYRRLKVSNNRAETGPIRVFSD----GRDPEVQ--GEVFPLPRRERRILEYLMANRGKR 167 A RR + A G + F D G V G L E R+L LM G+ Sbjct: 121 AQLRRTRP----ATIGGVLRFEDITLDGETHRVTRDGNELRLGPTEFRLLTTLMERPGRV 176 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ Q+ ++G D V+ V+ H+ +LRK L G DP+ + R GY++ Sbjct: 177 WSREQLLDRVWG-RDIYVDSRTVDVHVGRLRKALMIHGGTDPLRTVRGAGYAL 228 >gi|227329793|ref|ZP_03833817.1| DNA-binding transcriptional activator KdpE [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 226 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 16/159 (10%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R S +P+I +S Q +D D+G DD + KP E+LAR+ RR SN Sbjct: 66 RDLRQWSSLPVIVLSARTDEQDKIDALDAGADDYLTKPFGIGELLARLRVALRR--HSNT 123 Query: 125 RAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ET G I V R G+ L E R+L L+A+ GK + + Q+ + ++G Sbjct: 124 QQETPLVSFGNITVDLLNRQVNRDGQELHLTPIEFRLLATLLASPGKVLTQRQLLTQVWG 183 Query: 180 LFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216 N VE SH ++ LR KL DP + L Sbjct: 184 -------PNAVEHSHYLRIYMGHLRQKLESDPARPRHLL 215 >gi|237729610|ref|ZP_04560091.1| tricarboxylic transport regulatory protein [Citrobacter sp. 30_2] gi|226908216|gb|EEH94134.1| tricarboxylic transport regulatory protein [Citrobacter sp. 30_2] Length = 224 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 106/218 (48%), Gaps = 19/218 (8%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPR 65 ++ALV++G F D V F+ L + L S + A+ I G LE+ + Sbjct: 17 EKALVQNG----FAVDCV----FDGLAADHLLHS----ETYALAVLDINMPGLDGLEVVQ 64 Query: 66 IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 +R Q +P++ ++ ++ + + G DD + KP E+ AR+ A+ RR + Sbjct: 65 RLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLAKPFEIEELDARLRALLRRSAGQVH 124 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + F D +QG+ L RE+ +L LM R + V++ Q+F ++ L DE Sbjct: 125 GIQQLGELAFHDEGYFLLQGQPLALTPREQALLTVLMYRRLRPVSRQQLFEQVFSLSDEV 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 E+ +E +I +LRKKL+ G D + + R LGY ++ Sbjct: 185 SPES-IELYIHRLRKKLQ---GSDVRIATLRGLGYVLE 218 >gi|226315498|ref|YP_002775394.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098448|dbj|BAH46890.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 236 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 18/189 (9%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 R D+ ++ L G+ +++ R +R VP+I ++ S + + G DD V KP Sbjct: 45 RPDLILLDVMLPGRDG--MDVCRTVRQTYDVPIIMLTAKDSELDKVLGLELGADDYVTKP 102 Query: 103 IHHREILARVAAIYRR------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156 RE++ARV A RR K S + + + + E GE L RE + Sbjct: 103 FSTRELVARVKAHLRRNRSKVEEKDSQHVLRVHELEIDLNSYTVEKVGEALELTHREFEL 162 Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VD 211 L YL ++G+ + + + +++G FD + V+ I +LR+K+ + DP + Sbjct: 163 LVYLARHQGQVLTREHLLQSVWG-FDYFGDVRTVDVTIRRLREKIED----DPSQPKYII 217 Query: 212 SKRFLGYSI 220 ++R LGY++ Sbjct: 218 TRRGLGYTL 226 >gi|259908742|ref|YP_002649098.1| DNA-binding transcriptional regulator PhoP [Erwinia pyrifoliae Ep1/96] gi|224964364|emb|CAX55873.1| Two-component response regulator of virulence determinants [Erwinia pyrifoliae Ep1/96] gi|283478715|emb|CAY74631.1| Response regulator phoP [Erwinia pyrifoliae DSM 12163] gi|310767361|gb|ADP12311.1| DNA-binding transcriptional regulator PhoP [Erwinia sp. Ejp617] Length = 222 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 2/149 (1%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIR 132 P++ ++ Q ++ ++G DD V KP H E++AR+ A+ RR +++ P + Sbjct: 74 PILVLTARDGWQAKVEALEAGADDYVTKPFHIEEVVARLQALMRRNCGLASQIITLQPFQ 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 V R+ + L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 134 VDLSRRELTINDRQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLYP-DAELRESHTIDV 192 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +LRKK++ + + + + R GY D Sbjct: 193 LMGRLRKKIQAEHAQEVITTVRGQGYRFD 221 >gi|56419443|ref|YP_146761.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56379285|dbj|BAD75193.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 224 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 81/161 (50%), Gaps = 2/161 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R + VP++ ++ + + F+ G DD + KP E++ARV A+ +R ++ Sbjct: 62 ELCRELRDYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 121 Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ + G + + + + + LP +E +L L + GK + ++ I+G Sbjct: 122 ATSQIVQIGRLSLNRKTYECRLGDQEIFLPPKEFELLFKLASYPGKTFTRDELIEQIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D +E V+ HI +LR++ + + R LGY ++ Sbjct: 181 YDYDGDERTVDVHIKRLRERFAQPDSPFSIRTIRGLGYRLE 221 >gi|327438192|dbj|BAK14557.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 237 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 21/203 (10%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L+K+GY + DG +E LQ E + ++ +E+ R +R Sbjct: 23 LIKEGYRVICAYDG-----------DEALQRVEEEQPDLMLLDIMLPKRDGMEVCREVRK 71 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVSNNR 125 P+I ++ S + + G DD V KP RE++ARV A RRL ++ + Sbjct: 72 KYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLNVPAQIEEAQ 131 Query: 126 AETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 AET I V S P+ + E L RE +L YL + G+ + + + ++G Sbjct: 132 AETNDIVVGSLTIQPDAYLVLKRDESIELTHREFELLHYLAKHIGQVMTREHLLQTVWG- 190 Query: 181 FDEAVEENVVESHISKLRKKLRN 203 +D + V+ I +LR+K+ + Sbjct: 191 YDYFGDVRTVDVTIRRLREKIED 213 >gi|325284509|ref|YP_004257048.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324316683|gb|ADY27794.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 221 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 16/193 (8%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 LV +G+ L DG F + E R D++ I+ L G ++L R RA Sbjct: 21 LVAEGHTVLSASDG-----FGARE------GLPRADLAIIDWML--PGVSGMDLVREARA 67 Query: 70 HS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 Q+P++ ++ + L D GVDD V KP RE++ARV A+ RR+ V Sbjct: 68 ADMQLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVMARVRALLRRVGV-REEVSI 126 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + + G L + E +L L + G + ++ ++G D E Sbjct: 127 GDLSIDLRSHTASLSGLPLELSKLEFDLLTALAQHPGMAWTRERLLERVWG-SDFLGTER 185 Query: 189 VVESHISKLRKKL 201 VV+ HI+ LRKKL Sbjct: 186 VVDVHITGLRKKL 198 >gi|309803319|ref|ZP_07697416.1| putative response regulator protein GraR [Lactobacillus iners LactinV 11V1-d] gi|309808071|ref|ZP_07701989.1| putative response regulator protein GraR [Lactobacillus iners LactinV 01V1-a] gi|309809933|ref|ZP_07703781.1| putative response regulator protein GraR [Lactobacillus iners SPIN 2503V10-D] gi|325913033|ref|ZP_08175406.1| putative response regulator protein GraR [Lactobacillus iners UPII 60-B] gi|329921089|ref|ZP_08277612.1| putative response regulator protein GraR [Lactobacillus iners SPIN 1401G] gi|308164827|gb|EFO67077.1| putative response regulator protein GraR [Lactobacillus iners LactinV 11V1-d] gi|308168673|gb|EFO70773.1| putative response regulator protein GraR [Lactobacillus iners LactinV 01V1-a] gi|308169721|gb|EFO71766.1| putative response regulator protein GraR [Lactobacillus iners SPIN 2503V10-D] gi|325477713|gb|EGC80852.1| putative response regulator protein GraR [Lactobacillus iners UPII 60-B] gi|328934996|gb|EGG31485.1| putative response regulator protein GraR [Lactobacillus iners SPIN 1401G] Length = 222 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 77/156 (49%), Gaps = 6/156 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S VP+I I+ + + G D+ + KPI +A++ A+ RR KV + Sbjct: 66 IRQISHVPIIFITSHTESGDIVRAMQMGADEYITKPIDITVTIAKIQAVLRRTYDYKVGS 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G +++ E + V L R E ILE L N ++AK + D Sbjct: 126 DSIMYGDLKLNLSVAHLEGKNFVLELTRTELLILEILF-NFKNKIAKREAIINYCWQGDA 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +++N + +I++LRKKL+ +G+D + +K+ +GY Sbjct: 185 FIDDNTLAVNIARLRKKLKT-VGYDELIQTKKGIGY 219 >gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300075465|gb|ADJ64864.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 6/200 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 +L++D ++ DG + G ++ N+ + L V ++ L G G +VL Sbjct: 4 LLVEDDPVLTDGLSRVLNSHGFTVHTVNN--GNDALSQRFNAAVLVLDIGLPGIDGFEVL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R+ A + P++ ++ ++ + + G DD + KP E++AR+ A+ RR Sbjct: 62 R--RMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRRSAP 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + + + + ++ G L RE +LEYLM + + V+K QI A+ + Sbjct: 120 QPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAVLP-W 178 Query: 182 DEAVEENVVESHISKLRKKL 201 E N VE ++S++R K+ Sbjct: 179 GEDFTINAVEVYVSRIRLKI 198 >gi|295108183|emb|CBL22136.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 220 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 3/158 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IR P++ ++ + ++ G DD ++KP E+ AR+ A RR Sbjct: 61 ELCKKIRTLVDCPILFLTAKTEENSLVNGLSLGADDYISKPFGVMELRARIHAHLRREHR 120 Query: 122 SNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ R G + + + + + L + E I E+L NRG+ +K QI ++G Sbjct: 121 EHSVRMVLGRVCIQISQKKLLMDDKELSLTKAEYEICEFLAKNRGQVFSKEQILEKVFG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD ++ + +HI +R K + + P+ + +GY Sbjct: 180 FDSESNDSTIITHIKNIRSKFA-EYNYTPIKTVWGIGY 216 >gi|293365512|ref|ZP_06612221.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307703470|ref|ZP_07640412.1| response regulator [Streptococcus oralis ATCC 35037] gi|291315880|gb|EFE56324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307622877|gb|EFO01872.1| response regulator [Streptococcus oralis ATCC 35037] Length = 235 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 12/154 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP+I +S S + + G DD V KP +RE+ ARV A+ RR Sbjct: 61 LEVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 120 Query: 121 -VSNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 VS + E+ G + + D + GE L RE +L +L ++ G+ + Sbjct: 121 LVSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 180 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ I +LR+K+ + Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 213 >gi|237750902|ref|ZP_04581382.1| two-component system response regulator [Helicobacter bilis ATCC 43879] gi|229373347|gb|EEO23738.1| two-component system response regulator [Helicobacter bilis ATCC 43879] Length = 221 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 82/157 (52%), Gaps = 20/157 (12%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAET 128 + +VP+I + D + + F G DD ++ P + +LAR+ A RLK+++ N E Sbjct: 70 YPKVPVIILGDNEP-KHEVQSFKFGADDYLSCPFDNEVLLARIQA---RLKLTDSNLIEI 125 Query: 129 GPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G I + D G+D EV+G+ F +L +L R + V+K Q+ +AI+ Sbjct: 126 GDIVIIPDEERITFKGKDIEVKGKPF-------EVLTHLARQRDQIVSKDQLLNAIWD-E 177 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E V NV+E I+++R+++ L + +++ R GY Sbjct: 178 PELVTPNVIEVAINQIRQRMDKPLNINTIETVRRRGY 214 >gi|255036915|ref|YP_003087536.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254949671|gb|ACT94371.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 225 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 2/138 (1%) Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPE 141 +L+ L + G DD + KP H E+ ARV ++ RR NN IRV R Sbjct: 83 TLEDKLKGLEIGSDDYMTKPFHLSELNARVKSLIRRRNFGGNNDMTWKDIRVNLPARKVF 142 Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKK 200 ++ L ++E +L Y ++N + K I ++G D A ++V SHI LR+K Sbjct: 143 IKDIETTLSKKEYDLLLYFLSNIDVALTKESIAEHLWGDNMDSADSLDMVYSHIKNLRRK 202 Query: 201 LRNKLGFDPVDSKRFLGY 218 + K G D + S +GY Sbjct: 203 IVEKGGKDYIQSIYGIGY 220 >gi|227510397|ref|ZP_03940446.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190049|gb|EEI70116.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 242 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 10/169 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR + +P++ ++ + + D+G DD + KP E+LAR+ + R Sbjct: 75 LEVLRRIRQNDDIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRVMLRH-- 132 Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S N+A + + D R + L +RE +L L+ N G+ + + ++ Sbjct: 133 -SQNQATSDDLFRIEDLTLNTKSRQVTRGNSLIQLTQREYELLLTLIKNAGETMTRDELL 191 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + ++G+ E + NVV+ +I LR K+ + + R +GY + N Sbjct: 192 NLVWGVDFEG-QPNVVDVYIRYLRNKVDRNFKKTLIHTVRGVGYVLSAN 239 >gi|254517943|ref|ZP_05129999.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Clostridium sp. 7_2_43FAA] gi|226911692|gb|EEH96893.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Clostridium sp. 7_2_43FAA] Length = 227 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 7/141 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 I A +P+I ++ + + + G DD + KP H +E+ +R+ A++RR++ S ++ Sbjct: 68 INAKYTIPIIILTAKNDVFDKVLGLELGADDYITKPFHIKEVTSRIKAVFRRIEKSASKD 127 Query: 127 ETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 I++ S + R EV L +E +LE+ + NR K ++ Q+ I+ Sbjct: 128 NKNFIKINSNIKINFNNRTVLKNDEVIQLKPKEYELLEFFVQNRNKVFSREQLIDNIWE- 186 Query: 181 FDEAVEENVVESHISKLRKKL 201 F + V+ HI ++R KL Sbjct: 187 FSYDGDIRTVDIHIRRIRSKL 207 >gi|209550917|ref|YP_002282834.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536673|gb|ACI56608.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 225 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 17/169 (10%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L++ R +RA +Q ++ ++ + + + D G DD + KP E ARV + RR Sbjct: 60 LDVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDISEFEARVRVLLRRQ 119 Query: 119 LKVSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + G I R FS G P +P RE +LE L GK VAK Sbjct: 120 AGLRSATVSFGGISFDLNSRAFSAGATP------LDIPARELGLLEILFMRAGKVVAKEA 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I ++ FD+ + N +E ++S+LRK+L + G V + R +GY +D Sbjct: 174 IIQSLTA-FDDDISSNAIEQYVSRLRKRL-SPHGL-TVKTARGIGYYLD 219 >gi|167763747|ref|ZP_02435874.1| hypothetical protein BACSTE_02127 [Bacteroides stercoris ATCC 43183] gi|167697863|gb|EDS14442.1| hypothetical protein BACSTE_02127 [Bacteroides stercoris ATCC 43183] Length = 227 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/159 (23%), Positives = 77/159 (48%), Gaps = 4/159 (2%) Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 I R + VP++ ++ + L+ FDSG DD + KP RE+ AR++ + +R ++ Sbjct: 67 IRRQNETVPILILTALGTTDDKLEGFDSGADDYMVKPFDFRELNARISILLKRCQIPTVE 126 Query: 126 A-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDE 183 E ++V+ + G+ L +E +L + + N + + +T+I ++ FD Sbjct: 127 CIEYADLKVYLRTKSVSRNGQSIILTPKEYNLLLFFVQNPERILTRTEIAEKVWDTHFDT 186 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 N ++ +I+ LRKK+ + +K +G+ + Sbjct: 187 GT--NFIDVYINYLRKKIDKNFNTKLIHTKPGMGFIFSY 223 >gi|152994457|ref|YP_001339292.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150835381|gb|ABR69357.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 19/163 (11%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------- 118 A +P++ +S S+ + G DD + KP E+LARV + RR Sbjct: 69 AQKTLPVLILSALDSVDERVKGLREGGDDYLVKPFAFAELLARVEILIRRQPMAAVQQST 128 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 L+VS+ + + +V+ GR+ +Q + F +IL YLM + + V +T +F A+ Sbjct: 129 LLQVSDLKMDLLTRQVWRAGREISLQPKEF-------QILRYLMEHPKQVVTRTLLFEAV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D + NV++ H+++LRKK+ +++ R +GY + Sbjct: 182 WD-YDFDPQTNVIDVHVARLRKKVETDDLPPILETIRGVGYRL 223 >gi|71282474|ref|YP_267951.1| phosphate regulon response regulator PhoB [Colwellia psychrerythraea 34H] gi|71148214|gb|AAZ28687.1| phosphate regulon response regulator PhoB [Colwellia psychrerythraea 34H] Length = 233 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 3/149 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG-- 129 +P+I ++ + F++GVDD V KP +E++AR+ A+ RR+ ++ E Sbjct: 76 NIPIIMLTARSDEDDKVKGFEAGVDDFVTKPFSPKELIARIKAVIRRVSPTSLEEEVDFH 135 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 +++ + G L E R+L + M + + ++ Q+ ++G + VE+ Sbjct: 136 GLKLDPVAHRVAINGNSLDLGPTEFRLLHFFMTHTERVYSREQLLDNVWGT-NIYVEDRT 194 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ HI +LRK + + D V + R GY Sbjct: 195 VDVHIRRLRKAISGEGHEDFVQTVRGAGY 223 >gi|313885774|ref|ZP_07819521.1| putative sensory transduction protein RegX3 [Eremococcus coleocola ACS-139-V-Col8] gi|312619001|gb|EFR30443.1| putative sensory transduction protein RegX3 [Eremococcus coleocola ACS-139-V-Col8] Length = 216 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 77/155 (49%), Gaps = 4/155 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S +P+I ++ + +D F + D + KP + R+ + ++ + ++ Sbjct: 65 IRKKSDLPVIMLTAFGDEDYKIDAFTNFADGYIQKPFSLPVLKVRIETLLKKYYGTTDQF 124 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + V +++GE+ +E +L+YL +N G+ V ++QI ++ DE Sbjct: 125 VYKDVEVNFLNYTAKLKGEIVDSKVKELEVLKYLSSNEGRVVTRSQILDNVWKDSDEIPF 184 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V++ +I +LRKKL+ D + + R +GY ++ Sbjct: 185 DRVIDVYIKELRKKLQ----LDCIVTVRNVGYKLE 215 >gi|294620355|ref|ZP_06699666.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1679] gi|291593409|gb|EFF24972.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1679] Length = 221 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 3/151 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A +P++ I+ + F G DD + KPI E++ RV A+ RR K++ + T Sbjct: 70 ARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSKINYSSILT 129 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G ++ D F LP++E +L L++ K + Q+ I+GL D EE Sbjct: 130 IGQTKLELDTYTVVQNQHSFILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWGL-DTNTEE 188 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ HI +LR + F + + R LGY Sbjct: 189 RTIDVHIKRLRTRFEKTEDFQII-TVRGLGY 218 >gi|257093278|ref|YP_003166919.1| winged helix family two component transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045802|gb|ACV34990.1| two component transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 235 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 8/154 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-- 122 R +RA S++P++ +S + + D+G DD + KP E+LARV A RR S Sbjct: 69 RDLRAWSEIPVLVLSARTTEIDKVAALDAGADDYLTKPFGAAELLARVRAHLRRRSRSAG 128 Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 AE G IRV R E G L E R+L YL+AN + Q+ ++G Sbjct: 129 GTALAEFGSIRVDLARRTVERDGAPLHLTPIEYRLLSYLIANPDCVLTHRQLLKNVWGP- 187 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 + + V ++ LRKK+ + DP K Sbjct: 188 GHVEDSHYVRVYMGNLRKKIED----DPARPKHL 217 >gi|326201397|ref|ZP_08191269.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325988965|gb|EGD49789.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 234 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 14/161 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R SQ+P+I ++ + L G DD ++KP +LAR+ A+ RR + +A Sbjct: 81 LRKTSQIPVIFVTSRNTSMDELRALSLGGDDFISKPYDLPILLARIQALLRR----SGQA 136 Query: 127 ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 E + V + E G+ + + E +IL LM GK V+++ + I L+ Sbjct: 137 EKDILTVNGLTLSLPNWEIEHNGQRADITKNEAKILSCLMKTPGKIVSRSDL---IEYLW 193 Query: 182 DEAV--EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V ++N + ++++LR KL N D V +KR LGY I Sbjct: 194 DNQVYIDDNTLSVNVTRLRGKLNNIGLPDYVKTKRGLGYKI 234 >gi|254518597|ref|ZP_05130653.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226912346|gb|EEH97547.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 228 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 6/153 (3%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VLE+ IR S VP+I ++ + L ++ G DD + KP + ++A+V A+ Sbjct: 65 GITVLEM---IRKVSTVPVILLTAKGQEEDKLFGYEMGADDYITKPFSPKILIAKVKALL 121 Query: 117 RRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +R + E + + + +V E+ L +E +L YL N G +++ I Sbjct: 122 KRTSEDTFSGLNEYDGLTINKLSHEVKVNNEIINLSPKEFELLSYLSDNEGIALSRDTIL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 ++GL D + V+++I +LR+KL NK + Sbjct: 182 DNVWGL-DYYGDLRTVDTNIKRLREKLGNKASY 213 >gi|254432170|ref|ZP_05045873.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] gi|197626623|gb|EDY39182.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] Length = 240 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 13/150 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +RA S VP+I +S ++ + D G DD + KP +E+ AR+A I RR+ + Sbjct: 59 RRLRAESCVPIIFLSALDAIAERVSGLDLGADDYLPKPFSPKELEARIATILRRVGRGSA 118 Query: 125 RAE-------TGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 AE TG +R V ++ R GE L E +LE L G+ V + + Sbjct: 119 SAEPREQPSGTGVLRLGDLVVDTNRRQVTRDGERIALTYTEFSLLELLFREPGRVVPRAE 178 Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201 I ++G A + VV+ ++++LR KL Sbjct: 179 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 208 >gi|154252716|ref|YP_001413540.1| two component transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156666|gb|ABS63883.1| two component transcriptional regulator, winged helix family [Parvibaculum lavamentivorans DS-1] Length = 243 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 13/150 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE L+L R +R S +P++ ++ +D + G DD + KP RE+L R+ I Sbjct: 79 GESGLDLTRDLRQKSSIPILMLTARGEAGDRIDGLERGADDYLAKPFEPRELLLRIGTIL 138 Query: 117 RRLKVSNNR----AETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKT 171 RR + + R GP R F+ R G+ L RE +++ AN GK +++ Sbjct: 139 RRTQAAGARRHDEINLGPCR-FNITRGELWNGDTQIRLTTREIQLMRIFAANPGKPLSRL 197 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L D E ++ I++LR+KL Sbjct: 198 D-------LCDNEAAERSIDVQINRLRRKL 220 >gi|170722475|ref|YP_001750163.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169760478|gb|ACA73794.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 220 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 15/167 (8%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +EL R +RA +P++ ++ +L + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 IELLRRVRAGGDSLPVLILTARDALDDRITGLDAGADDYLVKPFDLNELKARLRALLRR- 118 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S RA+ I DP Q G L +E +L L+A GK + ++ Sbjct: 119 --SAGRAKV-LIEHAGVSLDPATQQVHYHGVEVVLTPKEYVLLHELLAQPGKVFTRERLT 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +YG +DE E N +E +I LRKKL N L + + R +GY ++ Sbjct: 176 QLLYG-WDEEPESNTLEVNIYHLRKKLFNGL----IRTVRGIGYLVE 217 >gi|254976866|ref|ZP_05273338.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255094253|ref|ZP_05323731.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255316006|ref|ZP_05357589.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518663|ref|ZP_05386339.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255651785|ref|ZP_05398687.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260684811|ref|YP_003216096.1| two-component response regulator [Clostridium difficile CD196] gi|260688469|ref|YP_003219603.1| two-component response regulator [Clostridium difficile R20291] gi|306521574|ref|ZP_07407921.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|260210974|emb|CBA66251.1| two-component response regulator [Clostridium difficile CD196] gi|260214486|emb|CBE06969.1| two-component response regulator [Clostridium difficile R20291] Length = 225 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/208 (23%), Positives = 94/208 (45%), Gaps = 23/208 (11%) Query: 15 YIALFGDDGVSLEGFNSLEFEE-----WLQSSAREDVSAIEAFLIGKGEKVLELPRI--- 66 Y L DD V + N + F + +A++ + +E ++ + LP I Sbjct: 2 YNLLVVDDDVDILNINQIYFSNIGFNVYTSETAKDAMDIVERIVLDCIILDISLPDIDGY 61 Query: 67 -----IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 I+ +P+I +S+Y + + F +G DD + KP +E+ R IY R++ Sbjct: 62 KMCNDIKEKVNIPIIFLSNYEHEEEKVRGFLAGGDDYITKPYSLKELELR---IYARMRQ 118 Query: 122 SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N + FS + R GE L E IL +L N+ + +K +I++ Sbjct: 119 YKNITSVPNVLKFSALVINVNSRKVTFDGESIDLTTMEFEILLFLAENKEQVFSKIEIYN 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ + D +++ V+ HI+++RKK+ + Sbjct: 179 QVWKMPDIG-DQHTVQVHIAQMRKKINS 205 >gi|3236110|emb|CAA04532.1| arcA [Lactococcus lactis] Length = 233 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 58/226 (25%), Positives = 101/226 (44%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D I F E F + + EE L++ I L+ L Sbjct: 4 ILVVDDEKPISD--IVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S P+I +S S + + G DD V KP +RE+LAR+ A RR+ V Sbjct: 62 DVAREIRKTSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRINV 121 Query: 122 S------NNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N + E G +R+ G+ L RE +L YL + G+ + + + Sbjct: 122 APAESTDNVKKELIIGNLRINPAHYAAYKNGKQLDLTHREFELLYYLAQHLGEVITRENL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 ++G +D + V+ + +LR+K+ + V ++R +GY Sbjct: 182 LETVWG-YDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGY 226 >gi|26250928|ref|NP_756968.1| DNA-binding transcriptional regulator BasR [Escherichia coli CFT073] gi|91213660|ref|YP_543646.1| DNA-binding transcriptional regulator BasR [Escherichia coli UTI89] gi|117626400|ref|YP_859723.1| DNA-binding transcriptional regulator BasR [Escherichia coli APEC O1] gi|170769529|ref|ZP_02903982.1| DNA-binding response regulator BasR [Escherichia albertii TW07627] gi|215489463|ref|YP_002331894.1| DNA-binding transcriptional regulator BasR [Escherichia coli O127:H6 str. E2348/69] gi|218561202|ref|YP_002394115.1| DNA-binding transcriptional regulator BasR [Escherichia coli S88] gi|218692409|ref|YP_002400621.1| DNA-binding transcriptional regulator BasR [Escherichia coli ED1a] gi|227886849|ref|ZP_04004654.1| DNA-binding transcriptional regulator BasR [Escherichia coli 83972] gi|237703701|ref|ZP_04534182.1| transcriptional regulatory protein basR/PmrA [Escherichia sp. 3_2_53FAA] gi|300988429|ref|ZP_07178667.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|301047669|ref|ZP_07194731.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|306815753|ref|ZP_07449902.1| DNA-binding transcriptional regulator BasR [Escherichia coli NC101] gi|312965731|ref|ZP_07779960.1| transcriptional regulatory protein basR/pmrA [Escherichia coli 2362-75] gi|331660690|ref|ZP_08361622.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli TA206] gi|26111360|gb|AAN83542.1|AE016771_53 Transcriptional Regulatory protein basR/pmrA [Escherichia coli CFT073] gi|56540613|gb|AAV92760.1| PmrA [Escherichia coli] gi|56540615|gb|AAV92761.1| PmrA [Escherichia coli] gi|56540617|gb|AAV92762.1| PmrA [Escherichia coli] gi|56540619|gb|AAV92763.1| PmrA [Escherichia coli] gi|56540621|gb|AAV92764.1| PmrA [Escherichia coli] gi|56540623|gb|AAV92765.1| PmrA [Escherichia coli] gi|56540625|gb|AAV92766.1| PmrA [Escherichia coli] gi|56540627|gb|AAV92767.1| PmrA [Escherichia coli] gi|56540629|gb|AAV92768.1| PmrA [Escherichia coli] gi|56540631|gb|AAV92769.1| PmrA [Escherichia coli] gi|56540633|gb|AAV92770.1| PmrA [Escherichia coli] gi|56540635|gb|AAV92771.1| PmrA [Escherichia coli] gi|56540637|gb|AAV92772.1| PmrA [Escherichia coli] gi|91075234|gb|ABE10115.1| transcriptional regulatory protein basR/PmrA [Escherichia coli UTI89] gi|115515524|gb|ABJ03599.1| BasR, DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli APEC O1] gi|170121586|gb|EDS90517.1| DNA-binding response regulator BasR [Escherichia albertii TW07627] gi|215267535|emb|CAS11989.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli O127:H6 str. E2348/69] gi|218367971|emb|CAR05771.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli S88] gi|218429973|emb|CAR10806.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli ED1a] gi|222035841|emb|CAP78586.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli LF82] gi|226901613|gb|EEH87872.1| transcriptional regulatory protein basR/PmrA [Escherichia sp. 3_2_53FAA] gi|227836191|gb|EEJ46657.1| DNA-binding transcriptional regulator BasR [Escherichia coli 83972] gi|294491023|gb|ADE89779.1| DNA-binding response regulator BasR [Escherichia coli IHE3034] gi|300300415|gb|EFJ56800.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|300407427|gb|EFJ90965.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|305851415|gb|EFM51870.1| DNA-binding transcriptional regulator BasR [Escherichia coli NC101] gi|307556283|gb|ADN49058.1| transcriptional regulatory protein [Escherichia coli ABU 83972] gi|307629184|gb|ADN73488.1| DNA-binding transcriptional regulator BasR [Escherichia coli UM146] gi|312289705|gb|EFR17596.1| transcriptional regulatory protein basR/pmrA [Escherichia coli 2362-75] gi|312948707|gb|ADR29534.1| DNA-binding transcriptional regulator BasR [Escherichia coli O83:H1 str. NRG 857C] gi|315287932|gb|EFU47334.1| response regulator receiver domain protein [Escherichia coli MS 110-3] gi|315293972|gb|EFU53324.1| response regulator receiver domain protein [Escherichia coli MS 153-1] gi|315296115|gb|EFU55424.1| response regulator receiver domain protein [Escherichia coli MS 16-3] gi|320193493|gb|EFW68130.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli WV_060327] gi|323190005|gb|EFZ75283.1| transcriptional regulatory protein basR/pmrA [Escherichia coli RN587/1] gi|323950321|gb|EGB46202.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323954400|gb|EGB50184.1| response regulator receiver domain-containing protein [Escherichia coli H263] gi|324008691|gb|EGB77910.1| response regulator receiver domain protein [Escherichia coli MS 57-2] gi|331051732|gb|EGI23771.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli TA206] Length = 222 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 15/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G ++ E QS S + L E L Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYACDGVSTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60 Query: 62 E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L RI + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 NN+ E+ G + + R + GE L +E +L LM G V + +++ Sbjct: 119 -HNNQGESELNVGNLTLNMGRRQVWMSGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 IY +D N +E HI LR+K+G + + R GY + N Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219 >gi|309789878|ref|ZP_07684456.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308228085|gb|EFO81735.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 231 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 17/197 (8%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L ++GY + DGV + L+ + RE I ++ + RI+R Sbjct: 21 LEREGYTVVVASDGV-----------QGLEQARREPPDLIVLDIMLPRLDGFSVCRILRQ 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-- 127 S VP+I ++ + + G DD ++KP E LAR+ AI RR + +E Sbjct: 70 ESDVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARIRAIMRRSERQPRTSERE 129 Query: 128 ---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 G +RV + R + LP++E +L L+ NRG +++ + ++G D Sbjct: 130 VLNAGALRVDTGSRRAWRDNQELTLPQKEFDLLTCLVRNRGIALSRDLLLERVWG-PDFI 188 Query: 185 VEENVVESHISKLRKKL 201 + V+ HI LR+K+ Sbjct: 189 GDSRTVDVHIRWLREKI 205 >gi|292488012|ref|YP_003530889.1| response regulator phoP [Erwinia amylovora CFBP1430] gi|292899230|ref|YP_003538599.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291199078|emb|CBJ46189.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291553436|emb|CBA20481.1| Response regulator phoP [Erwinia amylovora CFBP1430] gi|312172136|emb|CBX80393.1| Response regulator phoP [Erwinia amylovora ATCC BAA-2158] Length = 222 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 2/149 (1%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIR 132 P++ ++ Q ++ ++G DD V KP H E++AR+ A+ RR +++ P + Sbjct: 74 PILVLTARDGWQAKVEALEAGADDYVTKPFHIEEVVARLQALMRRNCGLASQIITLQPFQ 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 V R+ + L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 134 VDLSRRELTINDRQIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLYP-DAELRESHTIDV 192 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +LRKK++ + + + + R GY D Sbjct: 193 LMGRLRKKIQAEHAQEVITTVRGQGYRFD 221 >gi|196033103|ref|ZP_03100516.1| DNA-binding response regulator [Bacillus cereus W] gi|195994532|gb|EDX58487.1| DNA-binding response regulator [Bacillus cereus W] Length = 225 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 7/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++D S + + +G DD + KP E++ARV AI RR Sbjct: 62 EICRQIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 120 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + ET + +F D V+ G+ L +RE +L +L+ N+ +++ + + Sbjct: 121 CNQQNETTFFQFKDLFVDASSNIVKKAGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ V NVV+ +I +RKKL+ + + + GYS+ Sbjct: 181 VWG-YNVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 223 >gi|148255692|ref|YP_001240277.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146407865|gb|ABQ36371.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 207 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 77/168 (45%), Gaps = 10/168 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR SQVP++ +S + + G DD V KP RE++ARV I RR+ Sbjct: 36 LEVCRRIRRTSQVPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVNVILRRVA 95 Query: 121 VSNNRAETGPIRVFSDGR---DPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQ 172 + P + GR DP+ F L E IL LM ++ Q Sbjct: 96 TAGAHRTVEPDELIH-GRLRLDPQQHLACFAETPLTLTALEFSILRTLMTRATVVFSREQ 154 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I +A Y L + V + ++SHI +R KL + D +++ +G+ + Sbjct: 155 IMTAAYQL-NIQVSDRTIDSHIRNIRAKLASAGCEDAIETVHGVGFRL 201 >gi|197118248|ref|YP_002138675.1| winged-helix phosphate transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197087608|gb|ACH38879.1| winged-helix phosphate transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 226 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/202 (23%), Positives = 95/202 (47%), Gaps = 11/202 (5%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYP 82 ++L+G LE E +Q D+ ++ L G G V + + + +P++ ++ Sbjct: 30 IALDGAEGLEAVERVQP----DLILLDLMLPGMFGTDVCKTVKKSEKSAHIPVVMLTAKG 85 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPIRVFSDGRD 139 + F+ G DD V KP RE++ RV A+ RR + N G IR+ ++ + Sbjct: 86 EEIDKVVGFEVGADDYVIKPFSTRELMLRVKAVLRRKAPEPAATNIINVGGIRIDTERHE 145 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 V G+ E ++L L+ G+ ++ + ++G ++ + V++HI++LR Sbjct: 146 VTVNGDEINFTTTEFKLLYTLVMRFGRVQSRDVLLRDVWG-YNFVEDTRTVDTHITRLRT 204 Query: 200 KLRNKLGFDPVDSKRFLGYSID 221 K+ N D + + R GY ++ Sbjct: 205 KMGN--AGDMIKTVRGFGYKLE 224 >gi|148653890|ref|YP_001280983.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148572974|gb|ABQ95033.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 233 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 9/153 (5%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 S++P+I ++ + D+G DD + KP RE+++R+ A+ RR S+ + P Sbjct: 77 SEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRR---SSALSGDKP 133 Query: 131 IRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 I DP Q G + E R+L + M++ + +TQ+ ++G + V Sbjct: 134 IEAEGLSLDPVSQRLSADGTPLEIGPTEYRLLAFFMSHPERAYTRTQLLDQVWG-GNVYV 192 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E+ ++ HI +LRK L + + + R GY Sbjct: 193 EDRTIDVHIRRLRKVLEPYNYAEFIQTVRGTGY 225 >gi|209921602|ref|YP_002295686.1| DNA-binding transcriptional regulator BasR [Escherichia coli SE11] gi|256019757|ref|ZP_05433622.1| DNA-binding transcriptional regulator BasR [Shigella sp. D9] gi|331675637|ref|ZP_08376384.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli TA280] gi|332280893|ref|ZP_08393306.1| transcriptional regulatory protein [Shigella sp. D9] gi|56540601|gb|AAV92754.1| PmrA [Escherichia coli] gi|56540609|gb|AAV92758.1| PmrA [Escherichia coli] gi|56540611|gb|AAV92759.1| PmrA [Escherichia coli] gi|56540653|gb|AAV92780.1| PmrA [Escherichia coli] gi|209914861|dbj|BAG79935.1| two-component response regulator [Escherichia coli SE11] gi|284924201|emb|CBG37301.1| two-component response regulator [Escherichia coli 042] gi|324017155|gb|EGB86374.1| response regulator receiver domain protein [Escherichia coli MS 117-3] gi|331067245|gb|EGI38653.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli TA280] gi|332103245|gb|EGJ06591.1| transcriptional regulatory protein [Shigella sp. D9] Length = 222 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 15/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G + E QS S + L E L Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60 Query: 62 E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L RI + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 NN+ E+ G + + R + GE L +E +L LM G V + +++ Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWMSGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 IY +D N +E HI LR+K+G + + R GY + N Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219 >gi|86359177|ref|YP_471069.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86283279|gb|ABC92342.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 225 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 21/171 (12%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +RA +Q ++ ++ + + + D G DD + KP E ARV + RR Sbjct: 60 LDVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDIAEFEARVRVLLRR- 118 Query: 120 KVSNNRAET---GPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + R+ T G I R FS G P +P RE +LE L GK VAK Sbjct: 119 -QAGLRSATVGFGGISFDLNSRTFSSGDTP------LDIPARELGLLEILFMRAGKVVAK 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I ++ FD+ + N +E ++S+LRK+L + G V + R +GY +D Sbjct: 172 EAIIQSLTA-FDDDISANAIEQYVSRLRKRL-SPHGL-TVKTARGIGYYLD 219 >gi|327394622|dbj|BAK12044.1| transcriptional regulatory protein TctD [Pantoea ananatis AJ13355] Length = 223 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 85/161 (52%), Gaps = 7/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ R VP++ ++ +L + ++G DD + KP E+ AR+ A+ RR + Sbjct: 63 LTRLRRRGQTVPVLMLTARTTLDDRVRGLNTGADDYLTKPFELDELDARLRALLRRSQGQ 122 Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + +T G + + +G + + P RE +L LM +G+ V++ ++ + L Sbjct: 123 SPQNQTLGQLVLNGEGYFLLAEKPLALTP-RESSVLTTLMQRQGRPVSRQHLYEQTFTLA 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 DEA E+ +E ++ ++RKKL G D + + R LGYS++ Sbjct: 182 DEASPES-IELYVHRVRKKLA---GSDVGIVTLRGLGYSLE 218 >gi|313885716|ref|ZP_07819465.1| subtilin biosynthesis regulatory protein SpaR [Eremococcus coleocola ACS-139-V-Col8] gi|312619081|gb|EFR30521.1| subtilin biosynthesis regulatory protein SpaR [Eremococcus coleocola ACS-139-V-Col8] Length = 219 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 5/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA P++ ++ + ++ G DD + KP E+LAR+ A RR K + + Sbjct: 66 IRAKVDCPILFLTAKTMEEDIVEGLLIGGDDYITKPFGASELLARIEAHLRREKRERHTS 125 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 G IR + V E L + E +I E L +G+ ++ QI+ I+G FD Sbjct: 126 LNLGEIRFDLSSNEVFVGDEKVHLTKSEYQISELLAKRKGQVFSREQIYELIFG-FDGIR 184 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + + + HI +R K + K +P+++ +GY WN Sbjct: 185 DASAISEHIKNIRAKFQ-KYYENPIETVWGIGYK--WN 219 >gi|291534769|emb|CBL07881.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LE R +R + +I ++ + +++G DD + KP +L ++ A +RR Sbjct: 61 LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + +G I + ++ L + E ++L + + N + ++KTQI ++ Sbjct: 121 EKTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVF 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 L + V+EN + +I +LR+K+ + PV K G WN Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224 >gi|238759013|ref|ZP_04620184.1| Transcriptional regulatory protein tctD [Yersinia aldovae ATCC 35236] gi|238702824|gb|EEP95370.1| Transcriptional regulatory protein tctD [Yersinia aldovae ATCC 35236] Length = 221 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 7/162 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ + +P++ ++ + + + G DD + KP E+ AR+ A+ RR + Sbjct: 60 LARLRKRGQTLPVLLLTARTEVADRVKGLNQGADDYLTKPFELDELEARIRALLRRSIGE 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + +G + + L RE +L L+ RG+ VAK Q+F I+ L Sbjct: 120 TTQTIQFGDLTYHDEGYFL-LSNKPLALTPRESAVLTSLIHRRGRPVAKQQLFEQIFTLA 178 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSIDW 222 DEA E+ +E ++ ++RKKL G + V + R LGYS++ Sbjct: 179 DEANPES-IELYVHRVRKKL---YGSNVVIQTLRGLGYSLEC 216 >gi|228942881|ref|ZP_04105397.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975902|ref|ZP_04136430.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783828|gb|EEM31879.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816804|gb|EEM62913.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 223 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 10/162 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+ ++ S L + G DD + KP + +LARV I RR + Sbjct: 63 ICREIRKTSDVPIFMVTSRDSDVDELISMNLGADDFITKPYNTEILLARVTNILRR---T 119 Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + I ++ D Q + L + E +IL L+ NRG V + + Sbjct: 120 SGDFKMNHILIYRDFNLNLSNATVTYQDKSVELTKNEVKILSCLINNRGNIVKRDSLIET 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ D V+++ + +I++LRKKL +P+ ++R LGY Sbjct: 180 LWK-SDYFVDDSTLTVNINRLRKKLEEIGIENPIATRRSLGY 220 >gi|229816438|ref|ZP_04446739.1| hypothetical protein COLINT_03491 [Collinsella intestinalis DSM 13280] gi|229807980|gb|EEP43781.1| hypothetical protein COLINT_03491 [Collinsella intestinalis DSM 13280] Length = 237 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 93/205 (45%), Gaps = 12/205 (5%) Query: 23 GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA---HSQVPLIGIS 79 G+ EGF+ E+ + AR A+ ++ LE+ R +RA + VP++ ++ Sbjct: 23 GIEAEGFSC--DSEFKAAVARRVPDAVLLDIMLPDTDGLEIMRRLRADQATATVPIMMLT 80 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFS 135 S + D G DD + KP E+ +R A+ RR + + A G I + Sbjct: 81 AKDSELDKVVALDGGADDYLAKPFSLMELTSRCRALLRRGGMMSRPAPEMLSVGGIELSP 140 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 R+ V G L RE +LEYLM G + + +++G +D V+ H+ Sbjct: 141 SHREVRVDGRELKLTLREFDLLEYLMRKPGVVFTRESLLQSVWG-WDFDGGSRTVDVHVQ 199 Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220 LR+KL + D +++ R +GY + Sbjct: 200 TLRQKLGSH--ADRIETVRGVGYRL 222 >gi|196232874|ref|ZP_03131724.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196223073|gb|EDY17593.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 217 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 6/126 (4%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRR 152 G DD + KP E+LARV A+ RR + + + +GE + L R Sbjct: 94 GADDYLVKPFALEELLARVHALCRRTYGGKSTSICVAGLELNTSSKTVKRGEHIVDLLPR 153 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E R+LEYL A G+ V +T+I + IY + NVV+S I LRKK+ N + + + Sbjct: 154 EYRLLEYLAARTGQVVTRTEIETHIYDDLATPM-SNVVDSAICALRKKIGN----ERIRT 208 Query: 213 KRFLGY 218 +R LGY Sbjct: 209 RRGLGY 214 >gi|194444465|ref|YP_002040351.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403128|gb|ACF63350.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 226 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 14/214 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + L + GY+ + DG + L + +E S I ++ G ++ R + Sbjct: 18 QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 66 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ R Sbjct: 67 RTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 126 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 + + + + G+ L R+E +L L + G+ V +T I S ++G+ FD E Sbjct: 127 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 184 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N V+ I +LR K+ + + + R +GY + Sbjct: 185 TNTVDVAIRRLRAKVDDPFENKLIMTVRGMGYRL 218 >gi|164520378|gb|ABY60244.1| PhoP [Listeria monocytogenes] gi|164520410|gb|ABY60260.1| PhoP [Listeria monocytogenes] gi|164520432|gb|ABY60271.1| PhoP [Listeria monocytogenes] Length = 233 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 18/122 (14%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--------------TGPIRVFSDGRD 139 G DD + KP RE++AR+ AI RR + +AE G +++ D + Sbjct: 92 GADDYMTKPFSPREVVARIKAILRR---TEGKAEIIEELTEDVEATILIGDLKILPDSYE 148 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 +Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR Sbjct: 149 VYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRD 207 Query: 200 KL 201 K+ Sbjct: 208 KI 209 >gi|260684572|ref|YP_003215857.1| two-component system response regulator [Clostridium difficile CD196] gi|260688230|ref|YP_003219364.1| two-component system response regulator [Clostridium difficile R20291] gi|260210735|emb|CBA65606.1| two-component system response regulator [Clostridium difficile CD196] gi|260214247|emb|CBE06540.1| two-component system response regulator [Clostridium difficile R20291] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 14/163 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA S VPLI +S S + ++G DD + KP ++ ++ I RR+ N + Sbjct: 72 IRAISNVPLIFLSSRDSDMDLIMGINNGADDYITKPFSIDILVTKINGIIRRVY---NYS 128 Query: 127 ETGPI-----RVFSDGR---DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ I +F G+ + + + L + E +IL L+ N+ + V++ + ++ Sbjct: 129 DSNSILYCEDLMFDVGKGIIKHKYKDKSIELTKNEIKILTLLLKNKNRVVSRESLMMTLW 188 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 DE V +N + ++++LR K++ +LGFD + +K+ +GY I Sbjct: 189 D-NDEFVTDNALTVNMNRLRSKVK-ELGFDDFIKTKKGIGYII 229 >gi|313884093|ref|ZP_07817859.1| response regulator ArlR [Eremococcus coleocola ACS-139-V-Col8] gi|312620540|gb|EFR31963.1| response regulator ArlR [Eremococcus coleocola ACS-139-V-Col8] Length = 232 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 91/202 (45%), Gaps = 19/202 (9%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66 D L +GY DG S G + EEW DV ++ L LE+ R Sbjct: 22 DLELQHEGYETDIRHDGRS--GLEAALDEEW-------DVILLDLMLPELNG--LEVCRR 70 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LK 120 IR P+I ++ S+ + D G DD + KP E+LAR+ A++RR L+ Sbjct: 71 IRPIKDTPIIIMTARDSVIDRVSGLDQGADDYIVKPFAIEELLARLRALFRRIDHEEELR 130 Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V++ E + V R + V L +RE +L +LM N +++ + ++G Sbjct: 131 VTHQPTVEYRDLVVEKANRIVKRGDTVIDLTKREYELLLFLMENINMVMSRDTLLDKVWG 190 Query: 180 LFDEAVEENVVESHISKLRKKL 201 + VE NVV+ +I LR K+ Sbjct: 191 -YKSEVETNVVDVYIRYLRNKI 211 >gi|295100813|emb|CBK98358.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 102/225 (45%), Gaps = 10/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGK-GE 58 M +++D + +++ +G GF S E F + + ++ E V ++ L G+ G Sbjct: 1 MIYIVEDDSAIRELEQYALQSNGYEAVGFESSEPFWQAVHTTPPELV-ILDVMLPGEDGF 59 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +L+ R + ++P+I I+ S T+ D G DD + KP E L+RV A RR Sbjct: 60 SILKKLRAAPSLRRLPIIMITAKSSELDTVRGLDCGADDYITKPFGIMEFLSRVRAALRR 119 Query: 119 LKVSNNRAETGPIR--VFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + R R + + R V G L +E +L L+ N V + I Sbjct: 120 AE-PEARPNVYSFREILLDNARHSVTVSGAPVELTYKEYSLLRLLLENTNLVVTRETILQ 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D +VE V+ HI LRKKL + + + + R +GY + Sbjct: 179 VVWGT-DISVESRTVDMHIRTLRKKLGDAGKY--ICTVRKVGYKL 220 >gi|270290423|ref|ZP_06196648.1| two-component system, OmpR family, KDP operon response regulator KdpE [Pediococcus acidilactici 7_4] gi|270281204|gb|EFA27037.1| two-component system, OmpR family, KDP operon response regulator KdpE [Pediococcus acidilactici 7_4] Length = 228 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 8/171 (4%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L+++ ED AI L+ +E+ R IR P+I ++ S+ + D G DD Sbjct: 38 LEAALSEDFDAILLDLMLPEINGIEVCRRIRREKITPIIMMTARDSIIDRVSGLDHGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLP 150 + KP E+LAR+ A+ R++ + E I + + R + EV L Sbjct: 98 YIVKPFAIEELLARLRAVLRQVDLEEQDTSFHQTTVEFKDIVIEKENRVVKRNNEVINLT 157 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +RE +L LM N ++ + S ++GL D VE NVV+ +I LR K+ Sbjct: 158 KREYELLLLLMENVNVVQSRETLLSKVWGLED-GVETNVVDVYIRYLRNKI 207 >gi|226323497|ref|ZP_03799015.1| hypothetical protein COPCOM_01272 [Coprococcus comes ATCC 27758] gi|225208181|gb|EEG90535.1| hypothetical protein COPCOM_01272 [Coprococcus comes ATCC 27758] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LE R +R + +I ++ + +++G DD + KP +L ++ A +RR Sbjct: 61 LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + +G I + ++ L + E ++L + + N + ++KTQI ++ Sbjct: 121 EKTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVF 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 L + V+EN + +I +LR+K+ + PV K G WN Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224 >gi|152970615|ref|YP_001335724.1| response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955464|gb|ABR77494.1| putative response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 245 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 13/164 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + VP+I ++ L G DD V KP + E++ARV A+ RR + Sbjct: 81 LRKETNVPVIMVTALDQDVDKLMGLRLGADDYVIKPFNPSEVIARVEAVLRRTRPVAEST 140 Query: 127 ETGPIR-----VFSDGRDPEV--QGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAI 177 + P+R ++ D E+ QGEV L E ++L YL N K ++ ++ A Sbjct: 141 HSRPLRTPFLTIYPDEFYVEITAQGEVSTPVLTTTEFKLLTYLARNPRKVCSREELLDAC 200 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220 D + V+SH+SKLRKKL + G + +S R LGY + Sbjct: 201 LPEGDSL--DRTVDSHMSKLRKKLEHA-GLKGIPESIRGLGYRL 241 >gi|126641798|ref|YP_001084782.1| AdeR [Acinetobacter baumannii ATCC 17978] Length = 211 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +Q P+I ++ + G DD V KP + E++ARV A+ RR + +N Sbjct: 42 IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 101 Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 I + +D + E + L E +I+ +++ K + ++ + + Sbjct: 102 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 159 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D E V+SH+SKLRKKL + F + + R +GY +D Sbjct: 160 CMNDSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 202 >gi|26989432|ref|NP_744857.1| DNA-binding response regulator [Pseudomonas putida KT2440] gi|24984298|gb|AAN68321.1|AE016466_6 DNA-binding response regulator [Pseudomonas putida KT2440] Length = 220 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 15/167 (8%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LEL R +RA +P++ ++ +L + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 LELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRR- 118 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S RA+ I DP Q G L +E +L L+A GK + ++ Sbjct: 119 --SVGRAKV-LIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLT 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +YG +DE E N +E +I LRKKL N L + + R +GY ++ Sbjct: 176 QLLYG-WDEEPESNTLEVNIYHLRKKLFNGL----IRTVRGIGYLVE 217 >gi|329960930|ref|ZP_08299209.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] gi|328532216|gb|EGF59020.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 12/153 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G K+ L + + + VP+I I+ + T+ F+ G DD ++KP RE+ RV A+ Sbjct: 61 GFKMASLLKKDKKTAHVPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVAVRVKAVL 120 Query: 117 RRLKVSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 RR + + E P ++ + + GE L ++E IL L+ N+G+ + Sbjct: 121 RRTQQAE--TERAPEQITYKSLVLDIIKKKVSIDGEEASLTKKEFEILLLLLQNKGRVFS 178 Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201 + I I+ DE V + ++ +I++LRKK+ Sbjct: 179 REDILGRIWS--DEVYVLDRTIDVNITRLRKKI 209 >gi|319934959|ref|ZP_08009404.1| winged helix family Two component transcriptional regulator [Coprobacillus sp. 29_1] gi|319810336|gb|EFW06698.1| winged helix family Two component transcriptional regulator [Coprobacillus sp. 29_1] Length = 225 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 12/161 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I IS + + G DD +NKP + A++ AI RR + + + Sbjct: 67 IRKVSEVPIIFISSTNENMNIVMAMNMGADDFINKPFDLNVLTAKIQAILRR---TYSFS 123 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + I + D Q ++ L + E +I++ L V++ + A++ Sbjct: 124 KQFHILTYKDLVLNILEATISYQIQIIELTKNELKIMQMLFEKSETFVSRDDLMIALWQ- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 D+ V++N + ++++LRKKL + GFD + +K+ LGY + Sbjct: 183 SDQFVDDNTLSVNMNRLRKKL-DDFGFDSLIQTKKGLGYKL 222 >gi|218133400|ref|ZP_03462204.1| hypothetical protein BACPEC_01265 [Bacteroides pectinophilus ATCC 43243] gi|217992273|gb|EEC58277.1| hypothetical protein BACPEC_01265 [Bacteroides pectinophilus ATCC 43243] gi|291520917|emb|CBK79210.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] gi|291539317|emb|CBL12428.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] gi|291549703|emb|CBL25965.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LE R +R + +I ++ + +++G DD + KP +L ++ A +RR Sbjct: 61 LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + +G I + ++ L + E ++L + + N + ++KTQI ++ Sbjct: 121 EKTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVF 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 L + V+EN + +I +LR+K+ + PV K G WN Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224 >gi|163816668|ref|ZP_02208031.1| hypothetical protein COPEUT_02858 [Coprococcus eutactus ATCC 27759] gi|158447925|gb|EDP24920.1| hypothetical protein COPEUT_02858 [Coprococcus eutactus ATCC 27759] Length = 253 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 71/138 (51%), Gaps = 3/138 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R +S VP++ ++ S + + +D G DD + KP + A+ A+ +R K + Sbjct: 94 VCREMRRNSMVPILFLTARDSERDIMLGYDLGCDDYIVKPFSLATLYAKCKALIKRSKGT 153 Query: 123 NNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ E G I + +V G L +E IL+ L+ N+GK + + ++ I+G Sbjct: 154 DSNGELVCGAISMNPSRYMTKVNGVEVDLAPKEFAILKILLENKGKVITRERLLVDIWG- 212 Query: 181 FDEAVEENVVESHISKLR 198 +D + V++H+ KLR Sbjct: 213 YDYEGSDRCVDNHVRKLR 230 >gi|153854191|ref|ZP_01995499.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814] gi|149753240|gb|EDM63171.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 11/159 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR +S VP+I ++ + D G DD + KP + E+ AR+ AI RR+ Sbjct: 62 FEVCQQIREYSDVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRVS 121 Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E G +++ + R + + L +E +LE L N GK ++ + Sbjct: 122 KRDKNQENEKVIVKGEMKIDCESRRVIIGEKEINLTAKEFDLLELLAMNPGKVYSRENLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 + ++G ++ + V+ HI +LR+K+ +P D K Sbjct: 182 NIVWG-YEYPGDARTVDVHIRRLREKIET----NPSDPK 215 >gi|125973909|ref|YP_001037819.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125714134|gb|ABN52626.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] Length = 236 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 8/131 (6%) Query: 94 GVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 G DD ++KP RE +ARV +RR + S R G I + + R+ ++ + Sbjct: 99 GADDYISKPFSVREFVARVKVAFRRQADSFENSPKRVNVGRITIDFERREVYKDNQIIEM 158 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E +L+ L+ NRGK +++ + I+G FD E V+ HI LR+K+ + +P Sbjct: 159 TFKEFELLKLLIMNRGKVLSRDMLLQKIWG-FDFFGETRTVDVHIRYLRQKIEDDDN-NP 216 Query: 210 V--DSKRFLGY 218 V ++ R +GY Sbjct: 217 VYIETVRCIGY 227 >gi|50120277|ref|YP_049444.1| DNA-binding transcriptional activator KdpE [Pectobacterium atrosepticum SCRI1043] gi|49610803|emb|CAG74248.1| two-component response regulator of kdp operon [Pectobacterium atrosepticum SCRI1043] Length = 226 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 16/159 (10%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R S +P+I +S Q + D+G DD + KP E+LAR+ RR SN Sbjct: 66 RDLRQWSSLPVIVLSARTDEQDKIGALDAGADDYLTKPFGIGELLARLRVALRR--HSNT 123 Query: 125 RAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ET G I V R G+ L E R+L L+AN GK + + Q+ + ++G Sbjct: 124 QQETPLVSFGTITVDLLNRQVNRDGQELHLTPIEFRLLATLLANPGKVLTQRQLLTQVWG 183 Query: 180 LFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216 N VE SH ++ LR KL DP + L Sbjct: 184 -------PNAVEHSHYLRIYMGHLRQKLESDPARPRHLL 215 >gi|326330532|ref|ZP_08196840.1| DNA-binding response regulator PrrA [Nocardioidaceae bacterium Broad-1] gi|325951807|gb|EGD43839.1| DNA-binding response regulator PrrA [Nocardioidaceae bacterium Broad-1] Length = 221 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 18/213 (8%) Query: 16 IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE----LPRIIRAHS 71 IA F G+S +G + + L+ A + ++ G ++ L ++ S Sbjct: 13 IAAFLAKGLSADGHQTTTVADGLEGLEEALSGAFDLMVLDIGLPTIDGFEVLDQLRAQGS 72 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 ++P++ ++ S+ T+ + G DD + KP E+ AR+ R + N AE G + Sbjct: 73 RMPVVVLTARDSVHDTVSALEGGADDYLAKPFRFAELRARINVRLR--QQDNTDAEVGEL 130 Query: 132 RVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 R S D V G L RE + E L+ + G+ +++ Q+ +G+ FD Sbjct: 131 RSGSVALDLRTRRLRVDGRETDLSAREFALAEVLLRHPGQVLSRAQLLDLAWGMDFDPG- 189 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 NVV+ ++ LRK KLG V++ R +GY Sbjct: 190 -SNVVDVYVGYLRK----KLGSARVETVRGMGY 217 >gi|320085312|emb|CBY95095.1| Transcriptional regulatory protein resD [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 248 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 14/214 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + L + GY+ + DG + L + +E S I ++ G ++ R + Sbjct: 40 QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 88 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ R Sbjct: 89 RTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 148 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 + + + + G+ L R+E +L L + G+ V +T I S ++G+ FD E Sbjct: 149 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 206 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N V+ I +LR K+ + + + R +GY + Sbjct: 207 TNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240 >gi|302334242|gb|ADL24435.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JKD6159] Length = 221 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 6/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S VP+I IS + G DD + KP + +A++ A+ RR L V+N Sbjct: 66 IRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLSVAN 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + D Q + L E +IL+ L N K V++T + + + Sbjct: 126 DSMTVKGCTLILDEAKVVYQEQSIQLSLTELQILKLLFQNEDKYVSRTALIEKCWE-SEN 184 Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 +++N + ++++LRKKL N +G D + +K+ +GY + Sbjct: 185 FIDDNTLAVNMTRLRKKL-NTIGVNDFIITKKNVGYKV 221 >gi|167950592|ref|ZP_02537666.1| two-component system regulatory protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 258 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 80/148 (54%), Gaps = 2/148 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 +A P++ ++ + Q ++ ++G DD + KP H E+LAR+ A+ RR S Sbjct: 68 QAGKHFPILILTARGNWQDKVEGLEAGADDYLVKPFHVEELLARLNALLRRAAGWSQPLI 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 E GPI + + + +Q + L E ++LEY+M + G+ V+K+++ IY D + Sbjct: 128 ECGPIELNTRSQTVCLQQQPIDLTAYEYKVLEYMMLHAGQVVSKSELTEHIYDQ-DWDRD 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKR 214 NV+E + +LRKKL + P+++ R Sbjct: 187 SNVIEVFVRRLRKKLDPDARYKPIETLR 214 >gi|152969448|ref|YP_001334557.1| putative positive response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893919|ref|YP_002918653.1| putative positive response regulator [Klebsiella pneumoniae NTUH-K2044] gi|262041045|ref|ZP_06014264.1| DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329999872|ref|ZP_08303542.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3] gi|150954297|gb|ABR76327.1| putative positive response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546235|dbj|BAH62586.1| putative positive response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041603|gb|EEW42655.1| DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328538191|gb|EGF64343.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3] Length = 238 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 12/186 (6%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAF---LIGKGEKVLELPRIIRAHSQ-VPLIGISDYP 82 EG+ + + Q+ AR + +A L+ G LE+ R IR ++ +P+I IS Sbjct: 25 EGYQIVHEADGGQALARLETQVWDAVILDLMLPGVDGLEICRRIRQMTRYLPVIIISART 84 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNRAETGPIRVFS 135 S + + G DD + KP E++ARV A++RR L + R + + Sbjct: 85 SEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQEAMGQNLLMDAGRLSCHGLSIDP 144 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 R+ +++GE L RE +L Y + G+ ++ + ++G E E+ V +HI+ Sbjct: 145 LSREVKLRGETVDLTPREFDLLYYFARHPGEVFSRLALLEQVWGYQHEGY-EHTVNTHIN 203 Query: 196 KLRKKL 201 +LR K+ Sbjct: 204 RLRSKI 209 >gi|138894462|ref|YP_001124915.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|134265975|gb|ABO66170.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] Length = 226 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 80/161 (49%), Gaps = 2/161 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R + VP++ ++ + + F G DD + KP E++ARV A+ +R ++ Sbjct: 64 ELCRELRDYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLKRYRI 123 Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ + G + + + + PLP +E +L L + GK + ++ I+G Sbjct: 124 ATSQIVQIGHLSLNRKTYECRLGDVEVPLPPKEFELLFQLASYPGKTFTRDELIEQIWG- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D +E V+ HI +LR++ + + R LGY ++ Sbjct: 183 YDYEGDERTVDVHIKRLRERFAQPNVPFFIRTIRGLGYRLE 223 >gi|260682519|ref|YP_003213804.1| two-component response regulator [Clostridium difficile CD196] gi|260686118|ref|YP_003217251.1| two-component response regulator [Clostridium difficile R20291] gi|260208682|emb|CBA61470.1| two-component response regulator [Clostridium difficile CD196] gi|260212134|emb|CBE02769.1| two-component response regulator [Clostridium difficile R20291] Length = 238 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 17/177 (9%) Query: 42 AREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101 +++D + ++ G E IR +S +P++ ++ + + +G DD + K Sbjct: 50 SKQDYQLVVLDVMMPGMDGFETMEQIRKYSSIPILMLTSKSDNYSKVHGLRAGADDYLTK 109 Query: 102 PIHHREILARVAAIYRRLKVSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERR 155 P E ARV ++ RR N + E F D GE LP +E Sbjct: 110 PFEITEFTARVLSLIRRYTRFNPKNEEPQQLSFKGLLIDLDQHTVTTNGEPMLLPPKEFG 169 Query: 156 ILEYLMANRGKRVAKTQIFSAIYG---LFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +L Y ++GK + K QI+ A++G ++D +S+I + +LR K+ DP Sbjct: 170 VLLYCARHQGKILTKQQIYEAVWGEPYVYD--------DSNIMAIISRLRKKIELDP 218 >gi|91789821|ref|YP_550773.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91699046|gb|ABE45875.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 230 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ G D G +++ S E E + D + I+ L L Sbjct: 3 LLLVEDDVMLASGIKLGLSDAGYAVDWVGSAERAEEVLQGETFDAAIIDIGL--PRLDGL 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R +R +P++ ++ +LQ + D G DD + KP E+LAR+ A+ RR + Sbjct: 61 ELTRRLRRGGLAMPVLILTARDALQDRVQGLDIGADDYMVKPFELPELLARLRALLRRSQ 120 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + G + + + R G++ L RE ++EYL+ N K +K ++ A+ G Sbjct: 121 AATSATLSFGALELDTANRQAHANGQLIELGPREWTVMEYLLINAPKPASKDKLLQALTG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D+ + N +E +IS+LR KL G V S R GY ++ Sbjct: 181 -WDKEITPNAIEVYISRLRGKLEPH-GI-AVRSIRGFGYRLE 219 >gi|41407200|ref|NP_960036.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395551|gb|AAS03419.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 222 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 2/133 (1%) Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV-F 147 D FD G DD + KP R ++AR+ A+ RR T R +G Sbjct: 89 DAFDLGADDYLTKPFSFRVLVARLRALVRRGAPERPVVLTAGSLSLDPARHTVQRGSTPI 148 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L RE +LE+LM N+ V K I + ++ +NVVE ++ LR+K+ G Sbjct: 149 ALTPREYGVLEFLMRNKDVVVTKADILANVWDAHHHG-PDNVVEVYVGYLRRKIDVPFGT 207 Query: 208 DPVDSKRFLGYSI 220 + +++ R +GY + Sbjct: 208 NTIETIRGVGYRL 220 >gi|15896467|ref|NP_349816.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15026293|gb|AAK81156.1|AE007818_2 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325510625|gb|ADZ22261.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 228 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 18/158 (11%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR P+I ++ + + G DD + KP +E++ARV A+ RR Sbjct: 65 IDVLKWIRKADNTPVIMLTAKGETFDKVLTLELGADDYIVKPFEPKELVARVKAVLRRAN 124 Query: 121 VSNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 N ++ G V + +D +P +E +L YL N+ K + Sbjct: 125 SENVSSQVLNFNGLKIDMGSYTVIYNEKD-------IKMPPKEFELLYYLANNKNKVFTR 177 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 Q+ ++G +D + V+ H+ +LR+KL G+D Sbjct: 178 EQLLCEVWG-YDYPGDSRTVDVHVKRLREKLHEGNGWD 214 >gi|86147918|ref|ZP_01066223.1| transcriptional regulator CpxR [Vibrio sp. MED222] gi|218710833|ref|YP_002418454.1| transcriptional regulator CpxR [Vibrio splendidus LGP32] gi|85834345|gb|EAQ52498.1| transcriptional regulator CpxR [Vibrio sp. MED222] gi|218323852|emb|CAV20213.1| Transcriptional regulatory protein cpxR [Vibrio splendidus LGP32] Length = 229 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/206 (26%), Positives = 94/206 (45%), Gaps = 27/206 (13%) Query: 18 LFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE--LPRI------- 66 L DD L G + L FE + S A + + +EA +L+ +PR+ Sbjct: 5 LLIDDDTELTGLLKDILSFEGFTVSEANDGYAGLEAINDEIDLILLDVMMPRLNGMETLK 64 Query: 67 -IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL------ 119 +R + + P++ ++ + + G DD + KP RE+LAR+ AI RR Sbjct: 65 KLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQINTAP 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K ++++ + I VF ++ G++ L E +L +L+ N G+ + K + + G Sbjct: 125 KAASDKIQYQDIEVFPGKQEAYCNGQLIDLTTTEFALLSHLIQNPGQVITKEALSLDVLG 184 Query: 180 ----LFDEAVEENVVESHISKLRKKL 201 FD A ++ HIS LRKK+ Sbjct: 185 KRLAAFDRA-----IDMHISNLRKKI 205 >gi|226945181|ref|YP_002800254.1| Response regulator [Azotobacter vinelandii DJ] gi|226720108|gb|ACO79279.1| Response regulator [Azotobacter vinelandii DJ] Length = 249 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 16/171 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR+HSQ+P++ ++ + D G DD V KP E++AR+ AI RR Sbjct: 81 IEVLRRIRSHSQIPVLLLTARGDNIDRIAGLDLGADDYVPKPSSPGELVARLRAILRRTG 140 Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V + + G + ++ R E QG L E ++LE L + G+ V+K + Sbjct: 141 VQAQPEQAADAVRAGALTLWPARRKAEWQGAPLELTGTEFQLLEELARHVGQLVSKQDLS 200 Query: 175 SAIYG----LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 G FD ++ HIS +R+KL + +P + S R GY + Sbjct: 201 INALGRPLTRFDRR-----IDVHISSIRQKLGQRGDGEPWIQSVRGQGYQL 246 >gi|295108584|emb|CBL22537.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 229 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LE R +R + +I ++ + +++G DD + KP +L ++ A +RR Sbjct: 61 LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + +G I + ++ L + E ++L + + N + ++KTQI ++ Sbjct: 121 EKTEAGKMISGGIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVF 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 L + V+EN + +I +LR+K+ + PV K G WN Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224 >gi|228936548|ref|ZP_04099344.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948983|ref|ZP_04111256.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810739|gb|EEM57087.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823136|gb|EEM68972.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 206 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R + +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 43 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 102 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 103 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 162 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 163 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 205 >gi|297202432|ref|ZP_06919829.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197710046|gb|EDY54080.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 219 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 22/163 (13%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------- 118 A +VP++ ++ + D+G DD + KP + ++AR+ A+ RR Sbjct: 66 AGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRGNGAGASPV 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L++ R +T RVF DG + L +E +LE L G+ V+K QI ++ Sbjct: 126 LELGELRIDTAAHRVFLDGSE-------VTLTAKEFSVLEQLALRAGEVVSKAQILEHVW 178 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F + N+VE ++S LR+KL L + + R GY ++ Sbjct: 179 D-FAYDGDPNIVEVYVSTLRRKLDAGL----IRTVRGAGYRLE 216 >gi|72161734|ref|YP_289391.1| response regulator receiver [Thermobifida fusca YX] gi|71915466|gb|AAZ55368.1| response regulator receiver [Thermobifida fusca YX] Length = 219 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 14/163 (8%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ S++P+I ++ S++ T+ ++G DD + KP E+LAR I R++ + Sbjct: 64 LRRLREEGSRLPIIILTARDSVRDTVTGLETGADDYMTKPFRFEELLAR---IRLRMRSA 120 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIFSAI 177 +N AET + D + P L RE +LE + + G+ +++ QI S + Sbjct: 121 HN-AETTVLHAGDLALDLRTRRASTPEATVDLTAREFALLELFLRHPGQVLSRQQILSHV 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D NVV+ I LRK K+G +++ R +GY + Sbjct: 180 WG-YDYDPGSNVVDVFIRALRK----KIGAHRIETLRGMGYRL 217 >gi|116620224|ref|YP_822380.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116223386|gb|ABJ82095.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 231 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 10/137 (7%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFSDGRDPEVQ--G 144 SG DD + KP E+LAR+ A+ RR V + + G I V D R EV G Sbjct: 93 LKSGADDYLTKPFEMMELLARIEALLRRAPVRRSLNAGTFQLGGIAV--DFRRAEVTRAG 150 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 + L RE R+L YL+ + G+ V + + + ++G + + V+ H++ LR+KL Sbjct: 151 KPVTLSAREYRLLGYLIDHCGETVTREDLLTQVWG-YSATTDTRTVDVHVAWLRQKLEEN 209 Query: 205 LGFDP-VDSKRFLGYSI 220 + + + R LGY + Sbjct: 210 PKYPRYLQTVRGLGYKL 226 >gi|327190838|gb|EGE57903.1| two component winged helix family transcriptional regulator [Rhizobium etli CNPAF512] Length = 228 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 15/170 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR SQVP++ ++ + + G DD V KP E+ AR+ AI RR Sbjct: 61 IEVLQRIRKLSQVPVLMLTARGDDVDRISGLNLGADDYVPKPCSPGELAARLRAILRRAG 120 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS + G + + S R E +GE L E +LE L + G+ V+K +I Sbjct: 121 QPAAGVSTDTIRAGQLVIHSGSRSAEWRGEALELTGTEFSLLEVLARSAGQLVSKQEISK 180 Query: 176 AIYGL----FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G FD ++ HIS +R+KL + G + S R GY + Sbjct: 181 RAFGKPLTPFDRR-----IDVHISSVRQKLGLREDGQSWIQSVRGQGYQL 225 >gi|295705558|ref|YP_003598633.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294803217|gb|ADF40283.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 225 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 66/143 (46%), Gaps = 5/143 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +IR P+I +S + Q + G DD + KP +E+ AR+ A RR + Sbjct: 63 LCELIRKSISCPIIFLSAKQTEQDRVKGLLVGGDDYLVKPFSMKELKARIYAHLRREQRI 122 Query: 123 N----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N NR G + + +G E P RE I+ +L + G+ + Q++ ++ Sbjct: 123 NSNSYNRLHFGELTIDLNGYQILHNNEAIPFTSREFEIVHFLALHPGQVFTREQLYEKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G +D + + + H+ K+R KL Sbjct: 183 G-YDAEGDSSTITEHVKKIRAKL 204 >gi|282801738|gb|ADB02841.1| AzicR3 [Kibdelosporangium sp. MJ126-NF4] Length = 229 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 14/153 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR + P+I +D + + +G DD ++KP RE+LAR+ A+ RRL+ Sbjct: 60 LEVCRQIRRLNDTPMIAFTDGGAKLERVLVLQAGSDDCMDKPYEFRELLARIEALMRRLR 119 Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 G + + + R+ + G L R+E +L YL N G V + ++ Sbjct: 120 PRQRTRAVELSLSIGALEIDATAREARLDGRHVELTRKEFELLYYLARNAGTVVTRQRLM 179 Query: 175 SAIYGLFDEAVE------ENVVESHISKLRKKL 201 + ++G D+ +++H+ LR KL Sbjct: 180 AEVWG--DQTPHAASVRASRTIDTHVGSLRSKL 210 >gi|326318962|ref|YP_004236634.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375798|gb|ADX48067.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 236 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 12/148 (8%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA S VP++ I+ + Q ++ G DD + KP+ E +AR A+ RR Sbjct: 60 LEVIRTVRAASDTVPILFITRRNAEQDLVEALACGADDFMTKPLRMGEFMARCNALLRR- 118 Query: 120 KVSNNRAETGPIRVFSDGR-DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + +A G + VF R DPE V G L +E + ++ N G+ +++ + Sbjct: 119 --AYPQAAAGTL-VFGRYRFDPEQRSLRVDGAPVELKNKEYELALFMFQNAGRLLSREHL 175 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 A++G +A + +++H+S+LR KL Sbjct: 176 REAVWGDIHDAPSRS-LDTHVSRLRAKL 202 >gi|260774096|ref|ZP_05883011.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14] gi|260611057|gb|EEX36261.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14] Length = 225 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 15/136 (11%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG----RDPEVQ----G 144 +G DD + KP H E+LAR+ A+ RR +E+ P+ P +Q Sbjct: 93 TGADDYLAKPFHFEELLARLDALQRR------HSESSPLPTLQVADLVLCLPTMQVTRDN 146 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 ++ L +E ILE LM G ++ +I + ++G+ + + NVV+ ++ +LRKK+ + Sbjct: 147 QLIELTAKELSILELLMNKPGHIFSRERILANVWGMHQDPL-TNVVDVYMRRLRKKIDDP 205 Query: 205 LGFDPVDSKRFLGYSI 220 + +KR +GY + Sbjct: 206 FTAPLLKTKRGMGYYL 221 >gi|256826677|ref|YP_003150636.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256582820|gb|ACU93954.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 229 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 13/192 (6%) Query: 35 EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94 E+ L+++ + D ++ G EL R +R+ + P++ +S + + + G Sbjct: 39 EDALEAAKKTDYDLFILDIMLPGMDGYELCRRLRSFTSAPVLFLSARDTELDKVVGLEIG 98 Query: 95 VDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS----DGRDPEVQGEVFP-- 148 DD ++KP RE++ARV A+ RR + + ETG S D G+ P Sbjct: 99 GDDYLSKPFGLRELIARVRALLRR---GSGQMETGHAITASGITLDEDAHTATGDSGPID 155 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L RE ++ LM + G V++ + +G ++ E V++HI +LR K+ G+D Sbjct: 156 LTPREFELMAALMKHAGNVVSREDLLRDAWG-WEYLTETKTVDTHIKRLRDKI-AAAGYD 213 Query: 209 P--VDSKRFLGY 218 P V++ R GY Sbjct: 214 PSVVETVRGYGY 225 >gi|227500147|ref|ZP_03930217.1| response regulator [Anaerococcus tetradius ATCC 35098] gi|227217764|gb|EEI83066.1| response regulator [Anaerococcus tetradius ATCC 35098] Length = 219 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 5/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR P++ ++ + ++ G DD + KP E+LARV A RR K + + Sbjct: 66 IRNKVDCPILFLTAKTMEEDIVEGLLIGGDDYITKPFGAAELLARVEAHLRREKRERHTS 125 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 G IR + V + L + E +I E L +G+ ++ QI+ I+G FD Sbjct: 126 LNLGEIRFDLSSNEVFVGDKKVHLTKSEYQISELLAKRKGQVFSREQIYELIFG-FDGIG 184 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + + + HI +R K + K G +P+++ +GY WN Sbjct: 185 DASAISEHIKNIRAKFQ-KYGKNPIETVWGIGYK--WN 219 >gi|254518186|ref|ZP_05130242.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226911935|gb|EEH97136.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 226 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 5/164 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S +P+I ++ ++ + D+G DD + KP E+LAR+ ++ Sbjct: 61 LEVLRRIRRSSDIPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120 Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V+ + E G + + L RE +L+ LM N+ + + + Sbjct: 121 VTVKKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRNTLMEK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G +D E NV++ ++ LR K+ + + + R +GY I Sbjct: 181 VCG-YDYIGETNVIDVYVRYLRTKIDDVFKVKTITTVRGVGYVI 223 >gi|148825749|ref|YP_001290502.1| transcriptional regulatory protein [Haemophilus influenzae PittEE] gi|148715909|gb|ABQ98119.1| transcriptional regulatory protein [Haemophilus influenzae PittEE] Length = 221 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 5/202 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D L+ +G G +++ F + +SA D ++ L G +V Sbjct: 3 ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L+ R H VP++ ++ +L + SG DD + KP E+ AR+ A I RR Sbjct: 63 LQQWR--SNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFTLAEVAARLQALIRRRY 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ E +++ + R + + L RE ++LE M N+ + ++++ I + Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 +DE + ++ HI LR+KL Sbjct: 181 -WDEEISSGALDVHIYNLRQKL 201 >gi|119493257|ref|ZP_01624097.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119452730|gb|EAW33908.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 229 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 13/167 (7%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R +R +H+ VP+I ++ + + DSG +D + KP E LARV R L Sbjct: 67 IEICRRLRTSHNHVPIILLTAKDEVSDRVTGLDSGANDYIIKPFSLEEFLARVRVHIRHL 126 Query: 120 KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N + F D R+ + L +E +LEYLM++ + + + QI Sbjct: 127 QEPN-----ADLLTFYDLSLDRKTREVRRANRLIDLTAKEYDLLEYLMSHPRQVLTRNQI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D + N++E ++ LR KL ++ + + R +GY + Sbjct: 182 LEQVWG-YDFMGDSNIIEVYVRYLRIKLESEGESRLIQTVRSVGYVL 227 >gi|94499897|ref|ZP_01306433.1| two-component response regulator PhoB [Oceanobacter sp. RED65] gi|94428098|gb|EAT13072.1| two-component response regulator PhoB [Oceanobacter sp. RED65] Length = 232 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 9/136 (6%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 ++VP+I ++ + ++G DD + KP RE++AR+ A+ RR + + P Sbjct: 78 NEVPIIMLTAKGEEDNKVLGLEAGADDYITKPFSPRELVARLKAVLRR---TTPQGIEDP 134 Query: 131 IRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 I V DP E + E R+L++ M ++ + ++TQ+ ++G + V Sbjct: 135 IEVNGLILDPVCHRVSANDEALDIGPTEYRLLQFFMTHQERAYSRTQLLDQVWG-GNVYV 193 Query: 186 EENVVESHISKLRKKL 201 EE V+ HI +LRK L Sbjct: 194 EERTVDVHIRRLRKAL 209 >gi|328885480|emb|CCA58719.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 237 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 73/165 (44%), Gaps = 15/165 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + P+I ++ +++ + + G DD V KP E+LAR+ A+ RR + A Sbjct: 72 IRKLTTTPVIMVTARGDVRSRIHGLNLGADDYVVKPYDPGELLARIHAVSRRHAGTEETA 131 Query: 127 ET-----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 T GP+ + R V GE PL R+E +L L G + QI S Sbjct: 132 ATGTATDGTQLRLGPVTIELPTRRVSVDGESVPLTRKEFDLLALLAQRPGVVFRREQIIS 191 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ E +E H++ LR KLR + V R +GY + Sbjct: 192 EVWRTSWEGTGRT-LEVHVASLRSKLRMPALIETV---RGVGYRL 232 >gi|329850363|ref|ZP_08265208.1| KDP operon transcriptional regulatory protein kdpE [Asticcacaulis biprosthecum C19] gi|328840678|gb|EGF90249.1| KDP operon transcriptional regulatory protein kdpE [Asticcacaulis biprosthecum C19] Length = 225 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 26/164 (15%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR------- 117 R +R SQVP+I +S ++ +SG DD + KP RE+LAR+ R Sbjct: 64 RAVREWSQVPIIVLSAREQEADKIEALESGADDYLTKPFAPRELLARIKVALRHAARDAG 123 Query: 118 -RLKV---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R+++ + R + RV+ DG D + P+ E R+L L+ + GK + Q+ Sbjct: 124 PRMEIFERNGLRLDLSARRVWLDGEDVHLT----PI---EYRLLTALIQHPGKVLTHAQL 176 Query: 174 FSAIYGLFDEAVEEN-VVESHISKLRKKLRNKLGFDPVDSKRFL 216 +A++G + E+N + H LR+KL++ DP+ S RF+ Sbjct: 177 LNAVWG--RRSTEQNHYLRIHTQHLREKLKD----DPL-SPRFI 213 >gi|320179124|gb|EFW54083.1| Transcriptional regulatory protein basR/pmrA [Shigella boydii ATCC 9905] Length = 222 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 15/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G + E QS S + L E L Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60 Query: 62 E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L RI + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 61 HFLARIRQKKYTLPVLILTARDTLTDKITGLDVGADDYLVKPFALEELHARIRALLRR-- 118 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 NN+ E+ G + + R + GE L +E +L LM G V + +++ Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 IY +D N +E HI LR+K+G + + R GY + N Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219 >gi|306834174|ref|ZP_07467294.1| response regulator [Streptococcus bovis ATCC 700338] gi|304423747|gb|EFM26893.1| response regulator [Streptococcus bovis ATCC 700338] Length = 230 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 8/166 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + +I ++ S+ + D G DD + KP E+LARV A++RR V Sbjct: 63 EITRRLRLEKETSIIMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARVRAVFRRQDV 122 Query: 122 -----SNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ + G +R+ R + L +RE +L L++N + + + ++ Sbjct: 123 EFKREQGNQGKEGLLGLRLNPQNRSAVRGDDEISLTKREYDLLSVLLSNVNRVMTREELL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ +D +E NVV+ +I LR K+ + + R +GY I Sbjct: 183 ANVWR-YDTDIETNVVDVYIRYLRGKVDIPGKESYIQTVRGMGYII 227 >gi|300789759|ref|YP_003770050.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799273|gb|ADJ49648.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 226 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 2/150 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGP 130 P++ ++ ++ D+G DD + KP + +L+R+ A+ RR + + G Sbjct: 73 STPILMLTAKDGEDDEIEALDTGADDFLPKPFSYGVLLSRLRALIRRGGATRPGVLKLGD 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + R G L +E +L YLM G+ V K ++ ++ F + N+V Sbjct: 133 LELDQASRTCRRGGADITLTGKEFALLAYLMQRPGQVVTKAELLDNLWD-FAASATANLV 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E H+S LR+K+ G + + + R GY + Sbjct: 192 EVHVSALRRKIDVPFGAETIRTVRGAGYHV 221 >gi|291558418|emb|CBL37218.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] Length = 222 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 84/160 (52%), Gaps = 3/160 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ S L + G DD + KP + + + AR++A+ +R Sbjct: 64 VCRAIREKSEVPIIVVTSRDSEMDELMSINLGADDFITKPYNTQILSARISAMLKRTHKE 123 Query: 123 --NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N+ + +++ + + ++ L + E RIL L+ ++ V++ Q+ +++ Sbjct: 124 KVNDFLQYQGLKLQLNSSTVIYKDQIIELSKNEMRILYTLLQHKESIVSRDQLMESLWQ- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E +++N + +++++RKKL D + +KR GY I Sbjct: 183 SNEFIDDNTLTVNVNRVRKKLEVAGLKDFIKTKRGQGYMI 222 >gi|291524610|emb|CBK90197.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] Length = 229 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LE R +R + +I ++ + +++G DD + KP +L ++ A +RR Sbjct: 61 LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + +G I + ++ L + E ++L + + N + ++KTQI ++ Sbjct: 121 EKTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVF 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 L + V+EN + +I +LR+K+ + PV K G WN Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224 >gi|289523923|ref|ZP_06440777.1| phosphate regulon transcriptional regulatory protein PhoB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502579|gb|EFD23743.1| phosphate regulon transcriptional regulatory protein PhoB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 236 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 6/152 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---G 129 +P+I ++ + ++ + G DD V KP E+ AR+ I RR ++ + ET G Sbjct: 78 IPIIILTARRDERDVIEGLELGADDYVKKPFSLAELHARIKTILRRAHPASPQNETIKLG 137 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + +D + L E +++ LM N K V++ Q+ + ++G + E Sbjct: 138 KLELIADADILTYEDIKIVLTPIETELIKILMKNAPKIVSREQLLAKVWGTY--LGETRT 195 Query: 190 VESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++ HIS+LR K++ L F+ +++ R GY + Sbjct: 196 IDVHISRLRTKVKKAGLNFNLIETVRHRGYRL 227 >gi|153811081|ref|ZP_01963749.1| hypothetical protein RUMOBE_01472 [Ruminococcus obeum ATCC 29174] gi|149832969|gb|EDM88052.1| hypothetical protein RUMOBE_01472 [Ruminococcus obeum ATCC 29174] Length = 229 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LE R +R + +I ++ + +++G DD + KP +L ++ A +RR Sbjct: 61 LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + +G I + ++ L + E ++L + + N + ++KTQI ++ Sbjct: 121 EKTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVF 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 L + V+EN + +I +LR+K+ + PV K G WN Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224 >gi|56130694|ref|YP_145597.1| response regulator [Ralstonia metallidurans CH34] gi|94152380|ref|YP_581787.1| regulatory protein CzcR [Cupriavidus metallidurans CH34] gi|2500741|sp|Q44006|CZCR_RALME RecName: Full=Transcriptional activator protein CzcR gi|1403127|emb|CAA67086.1| czcR [Cupriavidus metallidurans CH34] gi|56068684|emb|CAI11246.1| response regulator [Cupriavidus metallidurans CH34] gi|93358750|gb|ABF12837.1| regulator , CzcR ,two components regulatory system involved in Cd(II), Zn(II), Co(II) resistance [Cupriavidus metallidurans CH34] Length = 225 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 18/164 (10%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--------R 118 IR+ S+ P++ ++ + + F+ G DD + KP E+LAR+ R R Sbjct: 66 IRSKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQSTSKESER 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L++++ + RVF E+ + F L L LM RG+ +++T I S ++ Sbjct: 126 LRIADLDIDVLGRRVFRGTTRIELTNQEFSL-------LHLLMRRRGEVLSRTTIASQVW 178 Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G+ FD + NVV+ I +LR K+ + + + R +GY +D Sbjct: 179 GVNFD--TDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVLD 220 >gi|89097843|ref|ZP_01170730.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89087345|gb|EAR66459.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 230 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 5/149 (3%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE + +RA +VP+I +S + G DD + KP E+ AR+ A+ Sbjct: 62 GEDGFSVCERVRAQYEVPVIFLSAKGEEWDKVKGLQIGGDDYIVKPFSPGELTARIHAVL 121 Query: 117 RRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR +N G I + R +V+G L +E +L + + ++ +++ Q Sbjct: 122 RRSGSISGADSNITSAGKITIDKKARSVKVEGSYIMLTLKEYELLMFFIGHQSHALSREQ 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + I+G+ D V++HI LR KL Sbjct: 182 LLEQIWGM-DYLGSLRTVDTHIKTLRMKL 209 >gi|94310118|ref|YP_583328.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353970|gb|ABF08059.1| two component transcriptional regulator, winged helix family [Cupriavidus metallidurans CH34] Length = 266 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 24/210 (11%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-V 73 Y + DG EG LE W A+ L+ G LE+ R RA ++ Sbjct: 48 YEVVHSADGA--EGLRLLEQGGW---------DALVLDLMLPGVDGLEICRRARAMTRYT 96 Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPI 131 P+I S S + + G DD + KP E++ARV A+ RR++ + RA+ G + Sbjct: 97 PIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVEAMARDVRADAGSL 156 Query: 132 RVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + DP V G+ L RE +L Y + K ++ + +A++G E Sbjct: 157 ELAGLAIDPLAREAAVDGKRLDLTPREFDLLYYFARHPDKVFSRMDLLNAVWGYQHEGY- 215 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 E+ V +HI++LR K+ DP KR L Sbjct: 216 EHTVNTHINRLRTKIE----VDPAQPKRIL 241 >gi|313677457|ref|YP_004055453.1| two component transcriptional regulator, winged helix family [Marivirga tractuosa DSM 4126] gi|312944155|gb|ADR23345.1| two component transcriptional regulator, winged helix family [Marivirga tractuosa DSM 4126] Length = 229 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 8/134 (5%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVF 147 F++G DD + KPI R +++R+ A +RR + NN+ G + + V G+ Sbjct: 99 FENGADDYITKPIKPRALMSRINAYFRRDVKKQKDNNKITIGGLTIDRTSYTVSVDGKQV 158 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 LP++E +L +L N K + + I+G D V V+ H+ +K+R K+G Sbjct: 159 SLPKKEFELLYFLAQNPNKVFNRDDLLQNIWG-SDVYVLARTVDVHV----RKVREKVGD 213 Query: 208 DPVDSKRFLGYSID 221 + + + +GY D Sbjct: 214 GYISTVKGVGYKFD 227 >gi|297530901|ref|YP_003672176.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297254153|gb|ADI27599.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 226 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 81/161 (50%), Gaps = 2/161 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R + VP++ ++ + + F+ G DD + KP E++ARV A+ +R ++ Sbjct: 64 ELCRELRDYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 123 Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ + G + + + + + LP +E +L L + GK + ++ I+G Sbjct: 124 ATSQIVQIGRLSLNRKTYECRLGDQEIFLPPKEFELLFKLASYPGKTFTRDELIEQIWG- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D +E V+ HI +LR++ + + R LGY ++ Sbjct: 183 YDYDGDERTVDVHIKRLRERFAQPDSPFSIRTIRGLGYRLE 223 >gi|271963772|ref|YP_003337968.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506947|gb|ACZ85225.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 226 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 3/139 (2%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-- 122 R++RA S++P+I + + D+G DD V KP ++ AR+ A+ RR S Sbjct: 65 RMLRAVSRIPVIVATARDGDAEMVRLLDAGADDYVVKPFSAAQLDARIRAVLRRTGESRT 124 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ G +RV R+ + G L +E +L YL A G+ + K ++ + ++ + Sbjct: 125 DSSVTVGGLRVDPRTREASLDGAPLDLSPKEFDLLHYLAARPGEVITKRELLTHVWQIPY 184 Query: 183 EAVEENVVESHISKLRKKL 201 ++ V+ H+S LR+KL Sbjct: 185 GGADKT-VDVHLSWLRRKL 202 >gi|207856439|ref|YP_002243090.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224584398|ref|YP_002638196.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|206708242|emb|CAR32542.1| response regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468925|gb|ACN46755.1| copper resistance protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 248 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 14/214 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + L + GY+ + DG + L + +E S I ++ G ++ R + Sbjct: 40 QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 88 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ R Sbjct: 89 RTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 148 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 + + + + G+ L R+E +L L + G+ V +T I S ++G+ FD E Sbjct: 149 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 206 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N V+ I +LR K+ + + + R +GY + Sbjct: 207 TNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240 >gi|163847093|ref|YP_001635137.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|163668382|gb|ABY34748.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] Length = 245 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 6/140 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA S VP++ I+ + F G D+ + KP E +ARV AI RR+ + R Sbjct: 84 IRAKSDVPIVIITAREGTDDIVQDFRRGADEYITKPFKVAEFVARVEAILRRVDMQKART 143 Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + + + V+G+ L E +L +L AN G+ + +F ++G + Sbjct: 144 APTFVQVGELVIDAAAHKVAVRGKEVKLTPMEFELLYFLAANAGQVFTREVLFREVWG-Y 202 Query: 182 DEAVEENVVESHISKLRKKL 201 + E N+V+ + +LR+K+ Sbjct: 203 EYVGETNLVDVCVRRLREKV 222 >gi|94313751|ref|YP_586960.1| DNA-binding response regulator [Cupriavidus metallidurans CH34] gi|93357603|gb|ABF11691.1| DNA-binding response regulator in two-component regulatory system with QseC [Cupriavidus metallidurans CH34] Length = 235 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 6/150 (4%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 Q+P++ ++ ++ + + D+G DD + KP+ E+ AR+ A+ RR + GP Sbjct: 72 QMPVVVLTARDAVASRISGLDAGADDYLVKPVELDELAARLRAVTRRAAGMPEPVWRHGP 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + R G+ L RE +LE L+ + + + + +Y +D+ E N + Sbjct: 132 LEYQPAARLALWHGKAVDLTSRESMLLELLLTYPNRVLTREFLRDKLYD-WDKGSESNTL 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E HI LRKKL + V + R GY++ Sbjct: 191 EVHIHHLRKKLHPGI----VRTLRGAGYTL 216 >gi|219667424|ref|YP_002457859.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537684|gb|ACL19423.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 230 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 7/153 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S P+I ++ L+ L + G DD + KP RE++AR+ A+ RR + Sbjct: 61 EICREIRKISATPVIMLTAKVELEDRLQGLNLGADDYIVKPFSPREVVARIKAVLRRTHI 120 Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +++ + + + + Q E L E +IL L G+ ++ Q+ Sbjct: 121 ETALLADSITYDNGLTIDNARHEVRFQDEAILLTPTEFKILGALAKYPGRVYSRGQLVQI 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 + G D +E V+++HI KLR+KL G DP Sbjct: 181 VQG-HDFGGDERVIDAHIKKLRQKLEGVPG-DP 211 >gi|47096094|ref|ZP_00233695.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 1/2a F6854] gi|258611481|ref|ZP_05232763.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N3-165] gi|258612273|ref|ZP_05269478.2| DNA-binding response regulator PhoP [Listeria monocytogenes F6900] gi|293596673|ref|ZP_05263412.2| DNA-binding response regulator PhoP [Listeria monocytogenes J2818] gi|17351932|gb|AAL38202.1|AF319446_1 putative response regulator RR62 [Listeria monocytogenes] gi|47015555|gb|EAL06487.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 1/2a F6854] gi|258600460|gb|EEW13785.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N3-165] gi|258610384|gb|EEW22992.1| DNA-binding response regulator PhoP [Listeria monocytogenes F6900] gi|293591406|gb|EFF99740.1| DNA-binding response regulator PhoP [Listeria monocytogenes J2818] Length = 240 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 18/122 (14%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--------------TGPIRVFSDGRD 139 G DD + KP RE++AR+ AI RR + +AE G +++ D + Sbjct: 99 GADDYMTKPFSPREVVARIKAILRR---TEGKAEIIEELTEDVEATILIGDLKILPDSYE 155 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 +Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR Sbjct: 156 VYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRD 214 Query: 200 KL 201 K+ Sbjct: 215 KI 216 >gi|320352638|ref|YP_004193977.1| winged helix family two component transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320121140|gb|ADW16686.1| two component transcriptional regulator, winged helix family [Desulfobulbus propionicus DSM 2032] Length = 229 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 104/229 (45%), Gaps = 19/229 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LIDD + D +G ++ + E ++ L ++ D S + ++ G Sbjct: 3 ILLIDDDTELCDLLTEYLEQEGFAVSACH--EAQQGLTTALAGDHSFLILDVMLPGFNGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R IR S VP++ ++ + + G DD + KP + RE++AR+ AI RR + Sbjct: 61 DLLRKIRQASTVPVLMLTARGDEVDRIVGLELGADDYLPKPFNPRELVARIRAIQRRGEN 120 Query: 122 SNNRAETGPIRVFSDG--RDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIF 174 T P ++ +D DP + PL E +L L+ G+ V + ++ Sbjct: 121 GLGNRRTAPGKLLADDIVLDPGTRTVWRHDVEIPLTTVEFALLHALLKRIGQVVNREELA 180 Query: 175 SAIYG----LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218 G LFD + ++ HIS LRKKL RN G + + + R +GY Sbjct: 181 MEALGRKLELFDRS-----IDVHISSLRKKLGRNVNGIERIKTVRSVGY 224 >gi|313888461|ref|ZP_07822128.1| response regulator receiver domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845490|gb|EFR32884.1| response regulator receiver domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 232 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 89/194 (45%), Gaps = 28/194 (14%) Query: 48 AIEAFLIGKGEKV------LELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDS 93 +EA I K EK+ L +P++ +R S VP+I +S + + Sbjct: 36 GLEALEIFKNEKIDLIIMDLMMPKLSGEEAIIKLREVSFVPIIILSAKSEDTDKIFGLNI 95 Query: 94 GVDDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFP 148 G DD V KP + E++ARV + RR LK N E G I++ + V+ + Sbjct: 96 GADDYVQKPFNPMELIARVKSNLRRFYAYDLKKDRNFIEIGSIKLDLSQKIAYVEDKPVA 155 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L E +ILE LM N + + +I+ +++ + A+E V HI ++R+K+ Sbjct: 156 LTSIEFKILELLMKNPNRVFSIEEIYESVWN--EPAMEAKTVTVHIRRIREKIE------ 207 Query: 209 PVDSKRFLGYSIDW 222 V+ K+ + + W Sbjct: 208 -VNPKKPMYLKVQW 220 >gi|307151193|ref|YP_003886577.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981421|gb|ADN13302.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 224 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 2/157 (1%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123 R+ + +VP+I ++ + + D+G DD + KP E+LARV A RR + N Sbjct: 67 RLRQTGDKVPIILLTAKDEISDRVTGLDAGADDYIVKPFSLEELLARVRANLRRTQEENP 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 +R+ R+ + L +E +LEYLM++ + + + QI ++G +D Sbjct: 127 EEILFNDLRLNRSTREVYRANRLIELTAKEFELLEYLMSHPRQVLTRDQILERVWG-YDF 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N++E ++ LR KL + + R +GY + Sbjct: 186 MGDSNIIEVYVRYLRLKLEENGEKRLIQTIRGVGYVL 222 >gi|303234960|ref|ZP_07321584.1| putative KDP operon transcriptional regulatory protein KdpE [Finegoldia magna BVS033A4] gi|302493815|gb|EFL53597.1| putative KDP operon transcriptional regulatory protein KdpE [Finegoldia magna BVS033A4] Length = 242 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 8/148 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++L + R S P+I IS + + ++ D+G DD + KP + E+LARV + RRL Sbjct: 64 IDLIKKFREFSTTPIIVISARSNDEDKIEALDAGADDFLTKPFNVDELLARVRSTIRRLN 123 Query: 121 VS-NNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S NNR E G I++ R V+GE L E +L L N GK + I Sbjct: 124 YSENNRIDNNVIFENGDIKIDYPSRSVFVKGEEIHLMPIEYSLLCLLSKNIGKVLTHQYI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 I+ + ++ + + + +++ LRKK+ Sbjct: 184 LKTIWVNYLDS-DLSSLRVYMTSLRKKI 210 >gi|253730310|ref|ZP_04864475.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253726003|gb|EES94732.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 221 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 6/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S VP+I IS + G DD + KP + +A++ A+ RR L V+N Sbjct: 66 IRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLSVAN 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + D Q + L E +IL L N K V++T + + + Sbjct: 126 DSMTVKGCTLILDEAKVVYQEQSIQLSLTELQILNLLFQNEDKYVSRTALIEKCWE-SEN 184 Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 +++N + ++++LRKKL N +G D + +K+ +GY + Sbjct: 185 FIDDNTLAVNMTRLRKKL-NTIGVNDFIITKKNVGYKV 221 >gi|239928855|ref|ZP_04685808.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291437180|ref|ZP_06576570.1| response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340075|gb|EFE67031.1| response regulator [Streptomyces ghanaensis ATCC 14672] Length = 221 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 15/159 (9%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A VP++ ++ + D+G DD + KP + ++ARV A+ RR A Sbjct: 69 AGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR----RQGAGA 124 Query: 129 GPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 P+ V D R VF L +E +LE L+ G+ V+K +I ++ Sbjct: 125 SPVHVHGDLRVDTAARRVFLGEDEVALTAKEFSVLEQLVLRAGEVVSKAEILEHVWDFAY 184 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E + N+VE ++S LR+KLR L + + R GY ++ Sbjct: 185 EG-DPNIVEVYVSALRRKLRAGL----IRTVRGAGYRLE 218 >gi|256823322|ref|YP_003147285.1| winged helix family two component transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796861|gb|ACV27517.1| two component transcriptional regulator, winged helix family [Kangiella koreensis DSM 16069] Length = 228 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 3/132 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPL 149 FD+G DD + KP E+L R A+ RR ++ +++ + G + V + + +G+ L Sbjct: 95 FDAGADDYLTKPFDLTELLLRCQALARRHQLHQSQSIQIGELVVNEKQQLAQREGQTLKL 154 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 + IL L+ V++ Q+ + I+G D+A + +VV SHI LR+ L Sbjct: 155 SSTDFTILMLLVHAYPNAVSRQQLINKIWG--DDAPDSDVVRSHIYTLRQALDKPFATPM 212 Query: 210 VDSKRFLGYSID 221 + + +G+ ++ Sbjct: 213 LTTLHGIGFKLE 224 >gi|268592860|ref|ZP_06127081.1| QseB [Providencia rettgeri DSM 1131] gi|291311649|gb|EFE52102.1| QseB [Providencia rettgeri DSM 1131] Length = 220 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 12/137 (8%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAE 127 P++ ++ +L + G DD + KP E++AR+ A+ RR K+++ E Sbjct: 74 PVLILTARDALDQRVQGLQQGADDYLCKPFALMEVMARLQALIRRRSGQLSSKLTHGDVE 133 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 P+ + QGE L +E +L M N K ++ I +Y +DE V Sbjct: 134 MDPVAMTV-----TQQGEPVQLKGKEFALLSLFMHNPNKVFSRPLIEEKLYN-WDEEVSS 187 Query: 188 NVVESHISKLRKKLRNK 204 N VE HI LR+KL NK Sbjct: 188 NSVEVHIHHLRRKLGNK 204 >gi|167560951|ref|ZP_02353867.1| DNA-binding response regulator [Burkholderia oklahomensis EO147] Length = 159 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 2/158 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + + L +G ++ E + + + R D ++ L G K L Sbjct: 3 LLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKEL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 L R+ R VP++ ++ + S+ +D F +G DD V KP RE++AR+ A+ RR Sbjct: 63 -LARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQCG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 V G + R+ + G L RRE ILE Sbjct: 122 VGATLLACGDLVYLFATREFQCSGVPLVLRRREHAILE 159 >gi|19703920|ref|NP_603482.1| two-component response regulator czcR [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296327490|ref|ZP_06870036.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714090|gb|AAL94781.1| Two-component response regulator czcR [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296155316|gb|EFG96087.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 224 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 82/160 (51%), Gaps = 5/160 (3%) Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +RA+ ++ ++ ++ + + D G DD + KP RE++AR+ A+ RR K Sbjct: 61 EVVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRR-K 119 Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N N + + V + + G+ L +E +LEYL+ N+G+ +++ +I ++ Sbjct: 120 YGNISNELQIDDLIVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E E N+++ I +RKK+ + +KR LGY Sbjct: 180 DYAYEG-ESNIIDVLIKNIRKKIDLGDSKPLIHTKRGLGY 218 >gi|16080525|ref|NP_391352.1| two-component response regulator YvcQ [Bacillus subtilis subsp. subtilis str. 168] gi|221311421|ref|ZP_03593268.1| hypothetical protein Bsubs1_18801 [Bacillus subtilis subsp. subtilis str. 168] gi|221315748|ref|ZP_03597553.1| hypothetical protein BsubsN3_18717 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320663|ref|ZP_03601957.1| hypothetical protein BsubsJ_18680 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324948|ref|ZP_03606242.1| hypothetical protein BsubsS_18836 [Bacillus subtilis subsp. subtilis str. SMY] gi|321313022|ref|YP_004205309.1| two-component response regulator YvcQ [Bacillus subtilis BSn5] gi|81814897|sp|O06978|YVCP_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yvcP gi|1945655|emb|CAB08062.1| hypothetical protein [Bacillus subtilis] gi|2635985|emb|CAB15477.1| two-component response regulator [YvcQ] [Bacillus subtilis subsp. subtilis str. 168] gi|320019296|gb|ADV94282.1| two-component response regulator (YvcQ) [Bacillus subtilis BSn5] Length = 237 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 9/167 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118 R IR S P+I IS + ++G DD + KP H ++A++ ++ RR Sbjct: 65 RQIRTISNAPIIFISARTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYS 124 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 L + E G + ++ D + E ++E ++L + K V++ ++ A Sbjct: 125 PSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQKEFQLLSIFVREHKKIVSRDELLEA 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ D V++N + ++++LR+KL N D + + R GY N Sbjct: 185 LWDDVD-FVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVN 230 >gi|331092535|ref|ZP_08341357.1| hypothetical protein HMPREF9477_02000 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400756|gb|EGG80359.1| hypothetical protein HMPREF9477_02000 [Lachnospiraceae bacterium 2_1_46FAA] Length = 232 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 27/194 (13%) Query: 27 EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRI--------IRAHSQVPL 75 EG+N L+ EE L+ RE+ ++ +I + +PR+ IR + +P+ Sbjct: 24 EGYNVLKAYDGEEALKVLKREE--KVDLLVID-----VMMPRLDGIRATLKIREENSLPI 76 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNRA--E 127 I +S + + G DD V KP + E++ARV + RR V NN Sbjct: 77 IILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTKLGSTVVQNNNTVYT 136 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + + D ++ V GE L E IL LM N+GK + QI+ +I+ D + Sbjct: 137 VGGLSIDDDLKEVTVDGEPVKLTPIEYNILLLLMKNQGKVFSIDQIYESIWN-EDAIGAD 195 Query: 188 NVVESHISKLRKKL 201 N V HI +R+K+ Sbjct: 196 NTVAVHIRHIREKI 209 >gi|326797358|ref|YP_004315178.1| PhoB family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326548122|gb|ADZ93342.1| two component transcriptional regulator PhoB, winged helix family [Marinomonas mediterranea MMB-1] Length = 231 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 101/215 (46%), Gaps = 24/215 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGK 56 ++IDD A +++ IA+ + + G+ LE E R D+ ++ + Sbjct: 6 VLIIDDEAPIRE-MIAV----ALEMAGYEYLEAENAQHGHEIIVDHRPDLILVDWMM--P 58 Query: 57 GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ S ++P+I ++ + + G DD + KP RE++AR+ Sbjct: 59 GGSGIELTRRLKKDSTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR + + PI V DP + + + E R+L++LM ++ + Sbjct: 119 AVLRR---ATPQGVDEPIEVDGLLLDPISQRVSIGNKPLEMGPTEYRLLKFLMTHQERAY 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ ++G + VEE V+ HI +LRK + N Sbjct: 176 SRAQLLDQVWG-GNVYVEERTVDVHIRRLRKAIGN 209 >gi|307298684|ref|ZP_07578487.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306915849|gb|EFN46233.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 228 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 92/185 (49%), Gaps = 5/185 (2%) Query: 38 LQSSAREDVSAIEAFL-IGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 L SS DV ++ L I G +V R H+ P++ ++ S+ + ++G D Sbjct: 46 LSSSNPYDVIILDVLLPIKNGFEVCSELRASGNHT--PVLMLTALDSVDERVKGLNTGAD 103 Query: 97 DVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERR 155 D + KP +E+LARV A+ RR + S +R + + + + + L +E R Sbjct: 104 DYLVKPFAFKELLARVNALLRRPRESFDRVLRVSDLSIDTVSHTVKRGDKEIELSPKEYR 163 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 +LE+L N + +++TQI +++ D + NVV+ +I LRKK+ + +++ R Sbjct: 164 LLEHLARNAHQVLSRTQIAESVWDQ-DFFSDSNVVDVYIRYLRKKIDDPFPTKLINTVRG 222 Query: 216 LGYSI 220 GY + Sbjct: 223 FGYKL 227 >gi|300790130|ref|YP_003770421.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799644|gb|ADJ50019.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 233 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 16/171 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + +R SQVP++ ++ + + G DD V KP +E+ RVA++ RR + Sbjct: 65 LEVCKRLRQVSQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELALRVASVLRRAR 124 Query: 121 VSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + G +R+ R + G PL RE +L + +A+ G ++ + Sbjct: 125 MPRPEPAAAVLVDGDLRLQMKARTATLSGRELPLTTREFDLLAFFLAHPGVAYSRADLLE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221 ++ + +++ V H+ +LR+K+ DP R +GY D Sbjct: 185 KVWSW--DFGDQSTVTVHVRRLREKIER----DPAKPTRVATVWGVGYRYD 229 >gi|296452179|ref|ZP_06893889.1| response regulator [Clostridium difficile NAP08] gi|296877533|ref|ZP_06901566.1| response regulator [Clostridium difficile NAP07] gi|296259006|gb|EFH05891.1| response regulator [Clostridium difficile NAP08] gi|296431545|gb|EFH17359.1| response regulator [Clostridium difficile NAP07] Length = 231 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 14/163 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA S VPLI +S S + ++G DD + KP ++ ++ I RR+ N + Sbjct: 72 IRAISNVPLIFLSSRDSDMDLIMGINNGADDYITKPFSIDILVTKINGIIRRVY---NYS 128 Query: 127 ETGPI-----RVFSDGR---DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ I +F G+ + + + L + E +IL L+ N+ + V++ + ++ Sbjct: 129 DSNSILYCEDLMFDVGKGIIKHKYKDKSIELTKNEIKILTLLLKNKNRVVSRESLMMTLW 188 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 DE V +N + ++++LR K++ +LGFD + +K+ +GY I Sbjct: 189 D-NDEFVTDNALTVNMNRLRSKVK-ELGFDDFIKTKKGIGYII 229 >gi|240169348|ref|ZP_04748007.1| mycobacterial persistence regulator [Mycobacterium kansasii ATCC 12478] Length = 228 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 78/147 (53%), Gaps = 10/147 (6%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R+ +P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR Sbjct: 60 LEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQI 173 K ++ AE+ +R FSD V EV L R E +LE L+AN + + +++I Sbjct: 120 K-PDDTAESVAMR-FSDLSLDPVTREVTRGQRRISLTRTEFALLEMLIANPRRVLTRSRI 177 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK 200 ++G FD N +E ++ LR+K Sbjct: 178 LEEVWG-FDFPTSGNALEVYVGYLRRK 203 >gi|218294955|ref|ZP_03495809.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] gi|218244863|gb|EED11387.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] Length = 225 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 2/159 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA P++ ++ +++ + G DD + KP H E+LAR+ + R + Sbjct: 62 EVARRIRATDDTPILVLTAQDAVERKVSLLSEGADDYLVKPFHPAELLARI-QVQLRHRE 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + ++ R + + L +E +L LM G+ ++ +I ++G Sbjct: 121 GSEVLSVGELTLYPKRRQVFFREQEVRLSPKEFDLLALLMGRPGRVFSRQEIEEKVWG-R 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ H++ LR KLR + + + R LGY++ Sbjct: 180 PLGRDSNVLDVHVANLRAKLREAGAYGYLRTVRGLGYAL 218 >gi|194292542|ref|YP_002008449.1| response regulator in two-component regulatory system with cpxa, regulates genes involved in folding/degrading periplasmic proteins (ompr family) [Cupriavidus taiwanensis LMG 19424] gi|193226446|emb|CAQ72395.1| response regulator in two-component regulatory system with CpxA, regulates genes involved in folding/degrading periplasmic proteins (OmpR family) [Cupriavidus taiwanensis LMG 19424] Length = 239 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 11/206 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +LIDD + D ++ ++ E E L + DV+ ++ L G G L Sbjct: 13 LLIDDDLELAQMLREYLEPDHCTVTLAHTREQGETLLARNDYDVALLDLMLPDGNG---L 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R+ RA SQ P+I + + + + G DD ++KP RE+ AR+ A+ RR + Sbjct: 70 DLLRLHRARSQRPVIMFTAHGDEADRVLGLELGADDYLSKPFSPRELRARMHAVLRRFQC 129 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175 + A P R GE L E+R+LE LM + G+ VA+ +I Sbjct: 130 AMPAAGASPWLEAGALRLNLASGEAIHGAARSTLTGAEQRVLEILMRSAGRVVAREEIGR 189 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 G E + + +++H+S LR+KL Sbjct: 190 FALGRAPERYDRS-LDTHVSALRRKL 214 >gi|152996638|ref|YP_001341473.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150837562|gb|ABR71538.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 232 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 15/162 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP+I ++ + + G DD ++KP + RE+LAR+ AI RR Sbjct: 67 IRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRASQEREDD 126 Query: 127 ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-- 179 T I + R ++GE+ L E +LE ++ G+ + K ++ G Sbjct: 127 PTADIDLSGVLLRRKDRTVYLEGELVELTTSEYTLLECMLMAPGQVLTKQELSEKALGRK 186 Query: 180 --LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 ++D + ++ HIS LRKK+ N DP + + R +GY Sbjct: 187 LTMYDRS-----LDMHISNLRKKIGNLENGDPRIKTVRGVGY 223 >gi|51245737|ref|YP_065621.1| Pho two-component system sensor histidine kinase [Desulfotalea psychrophila LSv54] gi|50876774|emb|CAG36614.1| related to two-component system response regulator (Pho family) [Desulfotalea psychrophila LSv54] Length = 242 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 59/219 (26%), Positives = 94/219 (42%), Gaps = 24/219 (10%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 LV+ G+ D G EE L ARE I ++ G LE+ + IR Sbjct: 23 LVRAGFNVTCADSG-----------EEALGCLAREAFDCILLDIMLPGISGLEVCQSIRQ 71 Query: 70 H-----SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 + + P+I ++ + +D + G DD + KP + ++ARV A+ RR + + Sbjct: 72 NEGKLDAGSPIIMMTAKGEEEDIIDGLEKGADDYITKPFSPKVLVARVKAVVRRGQKAEA 131 Query: 125 RAETGPIR----VFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++G I V GR + QG+ L E IL L G + QI A+ G Sbjct: 132 HSDSGHISIANLVIDQGRYEVTAQGKAIQLTLTEFGILVLLAEKPGWVFTRQQIIDAVRG 191 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +D V ++ I LRKKL +++ R +GY Sbjct: 192 -YDFLVTPRAIDVQIFGLRKKL--GAAGQSIETVRGIGY 227 >gi|87301695|ref|ZP_01084535.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] gi|87283912|gb|EAQ75866.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] Length = 268 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 13/150 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +RA S VP+I +S ++ + D G DD + KP +E+ AR+A I RR+ + Sbjct: 87 RRLRAESCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRGSA 146 Query: 125 RAET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 AE+ G + V ++ R +GE L E +LE L + G+ V + + Sbjct: 147 AAESRDVPAGQGVLRVGDLVVDTNRRQVTREGERIGLTYTEFSLLELLFRDPGRVVPRAE 206 Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201 I ++G A + VV+ ++++LR KL Sbjct: 207 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 236 >gi|333030029|ref|ZP_08458090.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] gi|332740626|gb|EGJ71108.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/193 (22%), Positives = 93/193 (48%), Gaps = 20/193 (10%) Query: 21 DDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------KGEKVLELPRIIRAHSQVP 74 D G S++ NS E + D+S + FL+ G ++ + R + + P Sbjct: 25 DAGYSVDAANSAE------EALAMDLSKYDLFLLDVMMGEISGYRLASMLREQKETEKTP 78 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134 +I ++ + + F++G DD ++KP RE+L R+ A+ +R T + V+ Sbjct: 79 IIFLTAKDTENDMVAGFNAGADDYISKPFSLREVLIRIKAVLKRTNEGGKVKSTAKL-VY 137 Query: 135 S------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 + + + + GE L +RE IL+ L+ + + ++ +I ++ + +E + + Sbjct: 138 NTLVIDLEQKKVTIDGEDISLTKREFEILQLLLEQKDRVFSRQEILDKVW-VNEEDISDR 196 Query: 189 VVESHISKLRKKL 201 V+ +I+++RKK+ Sbjct: 197 TVDVNITRIRKKI 209 >gi|328954650|ref|YP_004371983.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] gi|328454974|gb|AEB06168.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] Length = 242 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 12/161 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE+V R IR S VP+I ++ ++ + + G DD + KP RE++ARV A++ Sbjct: 64 GERVC---RAIRDTSDVPIIMLTAKGEVEDRIIGLELGADDYIIKPFSPRELVARVRALF 120 Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR +++ + G + + G V+G L E ++L L + G+ + + Sbjct: 121 RRTHLADEPQVEVLDFGDLVIDISGHKILVEGNEVDLTASEFKLLTTLARHPGRVYNRME 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 + + G +D E ++SH+ K LR KLG DP K Sbjct: 181 LVEKVLG-YDFEGYERTIDSHV----KNLRAKLGDDPKKPK 216 >gi|323965502|gb|EGB60956.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|323975545|gb|EGB70646.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] gi|327250054|gb|EGE61773.1| transcriptional regulatory protein basR/pmrA [Escherichia coli STEC_7v] Length = 222 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 15/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G + E QS S + L E L Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60 Query: 62 E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L RI + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 NN+ E+ G + + R + GE L +E +L LM G V + +++ Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWMDGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 IY +D N +E HI LR+K+G + + R GY + N Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219 >gi|300311515|ref|YP_003775607.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300074300|gb|ADJ63699.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 8/150 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IRA S +P++ ++ + + G DD V KP REI AR+ AI RR NN Sbjct: 65 RRIRAKSSMPVVMLTAKGDDTDRIIGLELGADDYVPKPCSPREIAARIRAILRRASAENN 124 Query: 125 RAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G + ++ + R G+ L E +LE L N GK V+K + Sbjct: 125 EQSPYSPLAVGALSMWPEQRRATWNGKPLELTSSEFNLLEVLARNAGKPVSKQHLSEQGL 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD 208 G + N ++ H+S +R+K+ LG D Sbjct: 185 GRPLARFDRN-IDVHLSSIRQKI-AALGSD 212 >gi|242240600|ref|YP_002988781.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech703] gi|242132657|gb|ACS86959.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech703] Length = 226 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 14/170 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ R +R Q+P+I ++ + + G DD V KP + RE++AR+ A+ RR + Sbjct: 60 IDVLRQVRRDRQIPVIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRYE 119 Query: 121 VSNNRAET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +R+E G + + R E G+ F L E +LE LM + + V K Sbjct: 120 ---DRSEASADVSTVSYGDLVINPSTRSSEWCGKAFDLTASEFNLLELLMRSSERVVTKD 176 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 ++ G EA + + V+ HIS +R+KL G +++ R +GY I Sbjct: 177 ELSEKCLGRRREAYDRS-VDVHISNIRQKLALLDGCTLTIETVRSVGYRI 225 >gi|239636730|ref|ZP_04677732.1| DNA-binding response regulator [Staphylococcus warneri L37603] gi|239598085|gb|EEQ80580.1| DNA-binding response regulator [Staphylococcus warneri L37603] Length = 224 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 84/160 (52%), Gaps = 9/160 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---V 121 R +R S VP++ +S + + + G DD + KP + ++A++ A+YRR+ V Sbjct: 64 RKMRQVSNVPILFLSSRDNPMDQVMSMELGADDYIQKPFYTNVLIAKLQAVYRRVYEFGV 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R V +D +G + L + E ILE L+ R + V++ + +A++ Sbjct: 124 EEKRTLNWQDAVVDLSKDSIQKGDQAIFLSKTEMIILEMLVNKRNQIVSRDTLITALWD- 182 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218 DEA V +N + ++++LRKKL +++G D +++K GY Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKL-SEIGMDSAIETKVGKGY 220 >gi|229590582|ref|YP_002872701.1| response regulator protein [Pseudomonas fluorescens SBW25] gi|229362448|emb|CAY49354.1| response regulator protein [Pseudomonas fluorescens SBW25] Length = 220 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 96/202 (47%), Gaps = 28/202 (13%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKV---LELPR-----IIR----AHSQVPLIGISDYPS 83 +WLQ SA+ A L + V L LPR ++R + + VP++ ++ + Sbjct: 28 DWLQDGN----SALHALLSETFDAVVLDLGLPRMDGLEVLRRLRDSGATVPVLILTARDA 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRD 139 + + D+G DD + KP E+ AR+ A+ RR S RA E I + + Sbjct: 84 TEDRIAGLDAGADDYLVKPFDLAELKARLRALLRR---SAGRARVVIEHAGICLDPSTQQ 140 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 G L +E ++L L++ G+ + + Q+ +YG ++E E N +E HI LRK Sbjct: 141 VSYHGVPVLLTPKEYQLLHELLSPPGRVMTRDQLMQLLYG-WNEEAESNTLEVHIHHLRK 199 Query: 200 KLRNKLGFDPVDSKRFLGYSID 221 K ++L + + R +GY ++ Sbjct: 200 KFSSEL----IRTVRGVGYLVE 217 >gi|256825954|ref|YP_003149914.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256689347|gb|ACV07149.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 238 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 10/157 (6%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 +P++ ++ S+ + G DD V KP E++AR+ AI RR + ++A+ Sbjct: 77 QHMPVLFLTARDSVDDKVKGLTVGGDDYVTKPFSLEEVVARIRAILRRSH-AEDQADEDR 135 Query: 131 IRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + F D + G V + E +L YLM N + ++K QI ++ +D Sbjct: 136 VLTFEDLTLNEDTYEVSRAGRVIEVSPTEFNLLRYLMQNPHRVLSKAQILDHVWD-YDFR 194 Query: 185 VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 E +VES+IS LR+K+ + G P + +KR +GY + Sbjct: 195 GEMGIVESYISYLRRKIDTE-GLPPLIHTKRGVGYVL 230 >gi|226357957|ref|YP_002787697.1| response regulator, OmpR [Deinococcus deserti VCD115] gi|226320200|gb|ACO48193.1| putative response regulator, OmpR [Deinococcus deserti VCD115] Length = 227 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 81/160 (50%), Gaps = 4/160 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S+ P++ ++ ++ + + ++G D + KP H E++ARV R+ + Sbjct: 63 EVARRLRRTSRTPIVVLTGMDTVASKVGLLEAGASDYLTKPFHPEELVARVRVQLRKHQQ 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GL 180 + G ++++ + QG L +E +L L G+ ++ I + ++ G+ Sbjct: 123 AGE-VSVGALKLYLQQQVCLYQGREVRLSPKEFELLGLLAEVPGRVYSRDVIVAELWPGV 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V +VVE H++ LR KLR G + + R +GY++ Sbjct: 182 VD--VGRSVVEVHMANLRSKLREVGGAGVLRTVRGVGYAL 219 >gi|225017711|ref|ZP_03706903.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum DSM 5476] gi|224949504|gb|EEG30713.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum DSM 5476] Length = 232 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 63/142 (44%), Gaps = 19/142 (13%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSN------NRA--ETGPIRVFSDGRDPEVQGE 145 G DD + KP H E++ARV A RR N N A E + + D + G+ Sbjct: 95 GADDYITKPFHPLEMVARVKAQLRRYTCYNEGRQKQNSAVIELHGLVIDKDTHTCSLYGK 154 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 PL E IL L N GK ++ Q+F I+G N V HI ++R+K+ Sbjct: 155 QLPLTPTEFSILWLLCENCGKVISSEQLFHEIWGEKYFESSNNTVMVHIRRIREKMN--- 211 Query: 206 GFDPVDSKRFL------GYSID 221 +P + +F+ GY I+ Sbjct: 212 --EPARNPKFIQTVWGVGYKIE 231 >gi|33862419|ref|NP_893979.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] gi|33640532|emb|CAE20321.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] Length = 290 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 22/173 (12%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +RA S VP+I +S ++ + D G DD + KP +E+ AR+A I RR+ + Sbjct: 89 RRLRAESCVPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRRVGPGSA 148 Query: 125 RAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 AE G + V ++ R GE L E +LE L G+ V + + Sbjct: 149 TAEIRDLPVGQGVLRVGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFREPGRVVPRAE 208 Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYS 219 I ++G A + VV+ ++++LR KL DP + + R +GYS Sbjct: 209 ILEQLWGYPPRRAADLRVVDVYVARLRGKLEP----DPRNPELILTVRGIGYS 257 >gi|315640045|ref|ZP_07895170.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] gi|315484173|gb|EFU74644.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] Length = 224 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 7/159 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVS 122 IR S VP+I IS + + + G DD V KP ++A++ A+ RR +K + Sbjct: 67 IREVSNVPIIFISSRNTNMDMIMAMNMGGDDFVTKPFELDVLVAKINALLRRSYNYVKGT 126 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + + + E+ G + L + E R+L LM N GK +++ ++ A++ D Sbjct: 127 QETFTHNGLVLNVENSSVEINGTLVDLSKNEYRLLFILMKNHGKILSREKLLRALWD--D 184 Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E V++N + +I++LR+K+ + +++K GY I Sbjct: 185 ERFVDDNTLTVNINRLRRKIEQAGVQNYIETKVGQGYII 223 >gi|313888991|ref|ZP_07822650.1| putative response regulator ArlR [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844977|gb|EFR32379.1| putative response regulator ArlR [Peptoniphilus harei ACS-146-V-Sch2b] Length = 226 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 10/151 (6%) Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPI 131 +I I+ S + D G DD + KP E+L+RV A+ RR V + I Sbjct: 77 VIMITAKTSEYDVISALDEGADDYIKKPFSVMELLSRVGAVERRAGKKVVDTGVLDYNGI 136 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + R + G +E +L+YL+ N+ +++ ++ + I+G +D E V+ Sbjct: 137 VIKDKNRSVTIDGVQVDFSLKEYEVLKYLILNKDIVISREKLLTEIWG-YDYEGETRTVD 195 Query: 192 SHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220 HI K +R+KLG+ D + + R +GY + Sbjct: 196 MHI----KLIRDKLGYKRDSIKTIRGIGYMM 222 >gi|296876105|ref|ZP_06900159.1| response regulator [Streptococcus parasanguinis ATCC 15912] gi|296432816|gb|EFH18609.1| response regulator [Streptococcus parasanguinis ATCC 15912] Length = 233 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 102/224 (45%), Gaps = 22/224 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 + K+GY L DG E L+ A E+ I L+ LE+ R IR Sbjct: 21 MAKEGYEVLTAFDG-----------REALEVFAAENPDVIILDLMLPEIDGLEVARTIRK 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-----NN 124 S VP+I +S + + + G DD V KP +RE+ ARV A+ RR + + N Sbjct: 70 TSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEFAADPQLEN 129 Query: 125 RAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 A+T G + + D + + L RE +L +L + G+ + + + ++G Sbjct: 130 DADTEIVIGDLHILPDAFLVQKGNKELDLTHREFELLYHLATHVGQVMTREHLLETVWG- 188 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223 +D + V+ + +LR+K+ + G + + ++R +GY + N Sbjct: 189 YDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232 >gi|296162888|ref|ZP_06845668.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295886859|gb|EFG66697.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 220 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 14/154 (9%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ ++ ++ + +G DD + KP E++AR A+ RR ET + Sbjct: 73 TPVLVMTARDTVADRVGGLTAGADDYLGKPFDLTELIARCRALLRR--AHGRSVETIEYQ 130 Query: 133 VFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 S DP G PL RE +L L+ ++G +++ ++ ++YG + E VE Sbjct: 131 DLS--VDPSTFTVTRNGLRQPLTSRECAVLVELLTHQGTPLSRARLEESLYG-WQEEVES 187 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 N +E H+S LRK KLG + + R +GY ++ Sbjct: 188 NAIEVHVSNLRK----KLGPGLIRTIRGVGYVVE 217 >gi|293605203|ref|ZP_06687591.1| response regulator [Achromobacter piechaudii ATCC 43553] gi|292816388|gb|EFF75481.1| response regulator [Achromobacter piechaudii ATCC 43553] Length = 233 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 19/182 (10%) Query: 48 AIEAF-----------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 A+EAF L+ G L++ R +RA S P++ ++ + +SG D Sbjct: 37 AVEAFRRHDPAITILDLMLPGRDGLQVCRDLRAFSSAPILMLTAREDDLDQILGLESGAD 96 Query: 97 DVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRE 153 D V KP+ R +LAR+ A+ RR +A E GP+ + R G L E Sbjct: 97 DYVIKPVEPRVLLARIRALLRRHNKGQEQADQLEFGPLSIDRHTRSVRHAGVEVDLTTME 156 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +L L + G+ + + + +A+ G +E N ++ + KLR KL DP D Sbjct: 157 FEMLWALASQAGQVLTRDDLLNAVRG-----IEFNGLDRSVDVCVSKLRRKLDDDPRDPA 211 Query: 214 RF 215 R Sbjct: 212 RI 213 >gi|293395128|ref|ZP_06639414.1| DNA-binding response regulator [Serratia odorifera DSM 4582] gi|291422305|gb|EFE95548.1| DNA-binding response regulator [Serratia odorifera DSM 4582] Length = 224 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 5/160 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV 121 L R+ + +P++ ++ + + + G DD + KP E+ AR+ A+ RR + V Sbjct: 63 LARLRKRGQNMPVLLLTARTDVADRVKGLNLGADDYLTKPFELDELEARIRALLRRSVGV 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + +G + + L RE +L L+ RG+ VAK Q+F ++ L Sbjct: 123 TQQALQFGALTYHDEGYFL-LDDKPLALTPRELAVLTTLIHRRGRPVAKQQLFEQVFTLS 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DEA E+ +E ++ ++RKKL + + R LGYS++ Sbjct: 182 DEANPES-IELYVHRVRKKLHGS--NVAIVTLRGLGYSLE 218 >gi|302540933|ref|ZP_07293275.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus ATCC 53653] gi|302458551|gb|EFL21644.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus ATCC 53653] Length = 249 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 15/139 (10%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFS---DGRDPEVQ-- 143 +G DD V KP E+L R+ AI RR + ET +R D R EV Sbjct: 103 AGGDDYVGKPFSIEEVLLRIRAILRRTGHDVPYGAGEDETEVLRYGDLELDERAHEVHRA 162 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 G+ PL E ++L LM N G+ ++K++I ++G FD + + +VE+++ LR+K+ + Sbjct: 163 GQYIPLSPTEFKLLTLLMENAGRVLSKSRILDRVWG-FDFSGDGRIVETYVRYLRRKIDH 221 Query: 204 KLGFDP--VDSKRFLGYSI 220 DP + ++R +GY + Sbjct: 222 ---LDPPLIHTERGVGYCL 237 >gi|251791731|ref|YP_003006452.1| winged helix family two component transcriptional regulator [Dickeya zeae Ech1591] gi|247540352|gb|ACT08973.1| two component transcriptional regulator, winged helix family [Dickeya zeae Ech1591] Length = 223 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 58/212 (27%), Positives = 90/212 (42%), Gaps = 21/212 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D L+ DG A G+ GFN +W + RE ++A+ + L Sbjct: 3 ILVIEDDRLIGDGIKA-----GLIKLGFNV----DWF-TQGREGMNALTSAPYDAVLLDL 52 Query: 62 ELPRI--------IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 LP I R H VP++ ++ +L+ + G DD + KP E+ AR+ Sbjct: 53 SLPEIDGLDILRQWRQHGYDVPVLVVTARDALEQRVQGLQQGADDYLCKPFELAEVAARL 112 Query: 113 AA-IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A I RR G + + R G L RE +LE + N + + Sbjct: 113 QALIRRRYGQLQPVLRHGAVTLDLGSRQVTHNGVSLALKSRELALLELFLMNPTHILTRN 172 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 Q+ +Y +D+ V N VE HI LR+KL N Sbjct: 173 QLEEKLYS-WDDEVSSNAVEVHIHHLRRKLGN 203 >gi|251782387|ref|YP_002996689.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391016|dbj|BAH81475.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127270|gb|ADX24567.1| response regulator protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 221 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 14/158 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 IR H +P+I IS T+ + G DD V+KP + A++AA RR + Sbjct: 69 IRKHLTIPIIFISSSNDEMDTVMALNMGGDDFVSKPFSLTILDAKIAAFLRRAQQFTSDD 128 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +S ++ + FS+G E L E +IL LM + V+K +I ++ Sbjct: 129 ISLDQFKLHFDGTFSNG------NEAVTLSPTEHKILTILMTRHQEIVSKEEILERLWE- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D ++ N + ++++LRKK+ +GFD + + R +GY Sbjct: 182 NDNFIDHNTLNVNMTRLRKKIAT-IGFDRIHTIRGVGY 218 >gi|164520364|gb|ABY60237.1| PhoP [Listeria monocytogenes] gi|164520372|gb|ABY60241.1| PhoP [Listeria monocytogenes] gi|164520420|gb|ABY60265.1| PhoP [Listeria monocytogenes] gi|164520426|gb|ABY60268.1| PhoP [Listeria monocytogenes] gi|164520436|gb|ABY60273.1| PhoP [Listeria monocytogenes] gi|164520438|gb|ABY60274.1| PhoP [Listeria monocytogenes] gi|164520442|gb|ABY60276.1| PhoP [Listeria monocytogenes] Length = 233 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 18/122 (14%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--------------TGPIRVFSDGRD 139 G DD + KP RE++AR+ AI RR + +AE G +++ D + Sbjct: 92 GADDYMTKPFSPREVVARIKAILRR---TEGKAEIIEELTEDVEATILIGDLKILPDSYE 148 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 +Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR Sbjct: 149 VYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRD 207 Query: 200 KL 201 K+ Sbjct: 208 KI 209 >gi|148927641|ref|ZP_01811100.1| two component transcriptional regulator, winged helix family [candidate division TM7 genomosp. GTL1] gi|147887013|gb|EDK72522.1| two component transcriptional regulator, winged helix family [candidate division TM7 genomosp. GTL1] Length = 225 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 85/165 (51%), Gaps = 5/165 (3%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R + ++ P+I ++ ++ + D+G DD + KP E+LAR+ ++ RR Sbjct: 60 LEICRQLRESGAKTPIIMLTAKDRIRDRVTGLDAGADDYLVKPFAFEELLARIRSLLRRP 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + G + + + + + L ++E +LEYLM ++G+ V K I + ++ Sbjct: 120 QDLLGEVLQIGDLTLNTITYEVKRGTTPVSLTQKEFALLEYLMRSQGRVVTKDMILNHVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221 +D + N +E +I LR K+ P + ++R GY ++ Sbjct: 180 D-YDADILPNTIEVYIGYLRSKVERPFEGHPRLIHTQRGFGYKME 223 >gi|221068840|ref|ZP_03544945.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220713863|gb|EED69231.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 236 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 4/149 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 +VP+I ++ ++ SG DD + KPI E+ AR++A+ RR + + + G Sbjct: 73 EVPIIFVTHRSEEADIVEGLASGADDFMIKPIRAGELRARISALLRRAYPLTAQSVLDFG 132 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P R + E+QG+ + RE + L N+G+ +++ + ++G + V+ Sbjct: 133 PYRFLTTTNGIEMQGKPVEVTHREYTLALTLFQNQGRLLSRDHLREVVWG-HNAEVQSRS 191 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +++H+S+LR L + G P GY Sbjct: 192 LDTHVSRLRNLLNLRAG-QPYAISAVYGY 219 >gi|21223763|ref|NP_629542.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256785143|ref|ZP_05523574.1| two-component system response regulator [Streptomyces lividans TK24] gi|289769037|ref|ZP_06528415.1| two-component system response regulator [Streptomyces lividans TK24] gi|6808396|emb|CAB70633.1| probable two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289699236|gb|EFD66665.1| two-component system response regulator [Streptomyces lividans TK24] Length = 222 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 14/159 (8%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A VP++ ++ + D+G DD + KP + ++ARV A+ RR A Sbjct: 69 AGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR---RGQGAGA 125 Query: 129 GPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 P+ V D R VF L +E +LE L+ G+ V+K +I ++ F Sbjct: 126 SPVHVHGDLRVDTAARRVFLGEDEATLTAKEFAVLEQLVVRAGQVVSKAEILEHVWD-FA 184 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + N+VE ++S LR+KLR L + + R GY ++ Sbjct: 185 YDGDPNIVEVYVSALRRKLRAGL----IRTVRGAGYRLE 219 >gi|16273595|ref|NP_439850.1| transcriptional regulatory protein [Haemophilus influenzae Rd KW20] gi|145629192|ref|ZP_01784991.1| transcriptional regulatory protein [Haemophilus influenzae 22.1-21] gi|145633643|ref|ZP_01789370.1| transcriptional regulatory protein [Haemophilus influenzae 3655] gi|145639135|ref|ZP_01794742.1| transcriptional regulatory protein [Haemophilus influenzae PittII] gi|145641031|ref|ZP_01796612.1| transcriptional regulatory protein [Haemophilus influenzae R3021] gi|148827131|ref|YP_001291884.1| transcriptional regulatory protein [Haemophilus influenzae PittGG] gi|260581049|ref|ZP_05848871.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae RdAW] gi|1176110|sp|P45337|QSEB_HAEIN RecName: Full=Transcriptional regulatory protein qseB gi|1574562|gb|AAC23354.1| transcriptional regulatory protein (ygiX) [Haemophilus influenzae Rd KW20] gi|144978695|gb|EDJ88418.1| transcriptional regulatory protein [Haemophilus influenzae 22.1-21] gi|144985520|gb|EDJ92336.1| transcriptional regulatory protein [Haemophilus influenzae 3655] gi|145271697|gb|EDK11607.1| transcriptional regulatory protein [Haemophilus influenzae PittII] gi|145274192|gb|EDK14057.1| transcriptional regulatory protein [Haemophilus influenzae 22.4-21] gi|148718373|gb|ABQ99500.1| transcriptional regulatory protein [Haemophilus influenzae PittGG] gi|260092289|gb|EEW76230.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae RdAW] gi|309750716|gb|ADO80700.1| Probable two-component regulator,transcriptional regulatory component QseB [Haemophilus influenzae R2866] Length = 221 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 5/202 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D L+ +G G +++ F + +SA D ++ L G +V Sbjct: 3 ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L+ R H VP++ ++ +L + SG DD + KP E+ AR+ A I RR Sbjct: 63 LQQWR--SNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ E +++ + R + + L RE ++LE M N+ + ++++ I + Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 +DE + ++ HI LR+KL Sbjct: 181 -WDEEISSGALDVHIYNLRQKL 201 >gi|331268334|ref|YP_004394826.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329124884|gb|AEB74829.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 228 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 72/146 (49%), Gaps = 6/146 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR S+ P+I ++ + + G DD + KP +E++AR+ A+ RR Sbjct: 65 IDVLKWIRKDSETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYN 124 Query: 121 VSNNRAETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + R + + + + E+ +P +E +L YL +N K + Q+ Sbjct: 125 AENVDKDVLKFRGLTIDINSYIVIYKENEI-KMPPKEFELLYYLASNTNKVFTREQLLCE 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR 202 ++G +D + V+ HI +LR+KL+ Sbjct: 184 VWG-YDYPGDSRTVDVHIKRLREKLQ 208 >gi|323486881|ref|ZP_08092198.1| hypothetical protein HMPREF9474_03949 [Clostridium symbiosum WAL-14163] gi|323690896|ref|ZP_08105189.1| response regulator [Clostridium symbiosum WAL-14673] gi|323399813|gb|EGA92194.1| hypothetical protein HMPREF9474_03949 [Clostridium symbiosum WAL-14163] gi|323505063|gb|EGB20832.1| response regulator [Clostridium symbiosum WAL-14673] Length = 231 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 100/210 (47%), Gaps = 14/210 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V DD+ +V+ I L G+ ++ ++ E E LQ+ + V+ + ++ G Sbjct: 4 ILVCDDDKQIVEAIDIYLTGEGFEVIKAYDGFEALELLQNHS---VNLMIIDVMMPGLDG 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 + +R S +P+I +S + + G DD + KP + E++ARV + RR Sbjct: 61 IRTTLKVRETSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLRRYT 120 Query: 119 -LKVSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 L N +A + G + + + ++ V GE+ L E IL L+ N GK + Q Sbjct: 121 QLGNMNTQAGGHIFKCGGLLINDENKEVTVDGELIKLTPIEYNILLLLVRNAGKVFSIDQ 180 Query: 173 IFSAIYGLFDEAV-EENVVESHISKLRKKL 201 I+ I+ +EA+ +N V HI +R+K+ Sbjct: 181 IYEEIWN--EEAIGADNTVAVHIRHIREKI 208 >gi|282900388|ref|ZP_06308338.1| manR (Two component Transcriptional regulator, Winged helix family) [Cylindrospermopsis raciborskii CS-505] gi|281194701|gb|EFA69648.1| manR (Two component Transcriptional regulator, Winged helix family) [Cylindrospermopsis raciborskii CS-505] Length = 268 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 5/138 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---- 123 R +P++ ++ +L + D+G DD + KP RE+LARV A+ RR V + Sbjct: 100 RQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSSVDSYTIT 159 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G + + + + QG + L +E ++L+Y M N + + QI ++ ++ Sbjct: 160 GKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYFMENPEQLLTHGQIMQHLWK-GEK 218 Query: 184 AVEENVVESHISKLRKKL 201 E NV+ + I LR+K+ Sbjct: 219 PPESNVIAALIRLLRRKI 236 >gi|302873802|ref|YP_003842435.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307689957|ref|ZP_07632403.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302576659|gb|ADL50671.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 223 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 4/158 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP+I IS + + G DD + KP ++A+V A+ RR + Sbjct: 67 IRKISSVPIIFISSMSDNMNVIMAVNMGGDDFIAKPFDLNILVAKVQALLRRTYSFGGKM 126 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E + + + E + L + E +IL+ L N GK +++ I + ++ D Sbjct: 127 DVIEHKGVVLNLNSAMLEYKNNKLELTKNEFKILQILFENIGKAISRDDIMTRLWE-SDS 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++N + ++++LRKKL + D V +K+ +GY ++ Sbjct: 186 YIDDNTLTVNVTRLRKKLSDVGLSDFVKTKKGIGYMVE 223 >gi|238909978|ref|ZP_04653815.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 219 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLVEDDTLIGDGIKTGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 63 LREWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ G + + + GE L +E +LE L+ N+G+ + + I +Y Sbjct: 121 GQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLELLLRNKGRVLPRKLIEEKLYN 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D+ V N VE H+ LR+ KLG + + + +GY++ Sbjct: 181 -WDDDVSSNAVEVHVHHLRR----KLGSEFIRTVHGIGYTL 216 >gi|228910661|ref|ZP_04074472.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228848929|gb|EEM93772.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 8/150 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S+VP+I ++ TL F+ G DD V KP +LAR + K S Sbjct: 66 RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKASKK 125 Query: 125 RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E I V R V L E IL Y M N+G + + Q+ S I Sbjct: 126 PLENEDDMLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLISRI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207 +G ++ A ++ V SHI LR KL K + Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|209809498|ref|YP_002265036.1| transcriptional regulator, response regulator [Aliivibrio salmonicida LFI1238] gi|208011060|emb|CAQ81477.1| transcriptional regulator, response regulator [Aliivibrio salmonicida LFI1238] Length = 225 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 7/165 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L++ IRA + P++ +S S+ ++ +G DD + KP E+LAR+ I RR Sbjct: 60 LKILSAIRATGNNTPVLILSALDSVDQRVEGLIAGSDDYLTKPFALAELLARINIILRRN 119 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ +N + + + + + L +E +L YL + + V++ ++F A Sbjct: 120 RPIESFSNEIKINNLLINLRSQKVTINNNAISLQNKEFILLRYLAEHVNEVVSRMRLFEA 179 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + FD + NV++ HI+KLRKKL + +++ R GY I Sbjct: 180 AWDYHFDP--KTNVIDVHIAKLRKKLEQGGAINLIETVRGAGYVI 222 >gi|160894215|ref|ZP_02074993.1| hypothetical protein CLOL250_01769 [Clostridium sp. L2-50] gi|156864248|gb|EDO57679.1| hypothetical protein CLOL250_01769 [Clostridium sp. L2-50] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 5/166 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LE R +R + +I ++ + +++G DD + KP +L ++ A +RR Sbjct: 61 LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + +G I + ++ L + E ++L + + N K ++KTQI ++ Sbjct: 121 EKTEAGKMISGDIVFIAGEMKVLIKNREISLTKTELKMLTFFLQNPKKILSKTQILENVF 180 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 L + V+EN + +I +LR+K+ N + + R LGY WN Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPAASVYIKNIRGLGYI--WN 224 >gi|74317305|ref|YP_315045.1| two component transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74056800|gb|AAZ97240.1| Two component Transcriptional regulator, Winged helix family [Thiobacillus denitrificans ATCC 25259] Length = 232 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/205 (23%), Positives = 95/205 (46%), Gaps = 7/205 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + D G++G+ +S+ + WL SS R D+ ++ L GE Sbjct: 6 ILVVDDDQELLDMVCRYLGENGLDAHAAADSVHMDAWLASS-RPDLIVLDVML--PGEDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + +++ VP++ +S S + + G DD + KP H RE+LAR+ A RR Sbjct: 63 LSVVKRLKSRLDVPVLMLSARSSDVDRILGLEMGADDYLTKPFHPRELLARIHARLRRSP 122 Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E G R+ RD G+ L + +L LM + + + +TQ+ + Sbjct: 123 APRQEDALEAGSFRLDFVRRDAYKHGQPLALSTADFSLLSLLMRHSHRVLDRTQLVD-LA 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203 + ++ +++LR+K+ + Sbjct: 182 SAMERMPFNRSIDVRVARLRRKIED 206 >gi|16125553|ref|NP_420117.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|13422643|gb|AAK23285.1| DNA-binding response regulator [Caulobacter crescentus CB15] Length = 221 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 8/147 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133 P++ +S ++ ++G DD + KP E+LAR + RR G R+ Sbjct: 74 PVLILSARGDWTEKVEGIEAGADDYLAKPFEMGELLARARGLVRR-AAGRTSPVIGAGRL 132 Query: 134 FSDGR--DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 D R + G L E R+L+ L N G+ V+ ++ +YG+ D A + N +E Sbjct: 133 ALDTRRMSATLDGAPIRLSPLEFRLLDCLAHNPGRAVSAGELAEQLYGVADTA-DTNAIE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +++LR+ K+G D ++++R GY Sbjct: 192 ALVARLRR----KIGADVIETRRGFGY 214 >gi|326384016|ref|ZP_08205699.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326197176|gb|EGD54367.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 235 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 11/147 (7%) Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +RA P + +S S++ ++ G DD V KP E++AR+A + RR Sbjct: 69 LLRRLRADGIDAPALFLSARDSVEDKVNGLTIGGDDYVTKPFSLEEVVARLAVLLRRSGF 128 Query: 122 SNNRAETGPIR-VFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E P R VFSD D E GE+ L E +L Y M N G ++K +I Sbjct: 129 GVGDEE--PTRIVFSDLELDDETHEVFKNGELVSLSPTEFTLLRYFMVNAGTVLSKPRIL 186 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++ +D + NVVES++S LR+K+ Sbjct: 187 DHVWS-YDFGGDVNVVESYVSYLRRKV 212 >gi|319744078|gb|EFV96455.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 223 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/210 (23%), Positives = 104/210 (49%), Gaps = 13/210 (6%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L ++GY + +G E N L+ EE + ++ I ++ + + EL A Sbjct: 21 LTQEGYQFITASNGQ--EALNCLDTEE-----VQLIITDIMMPMMDGYQLIQELRS---A 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128 VP+I ++ ++ F G DD + KP+ +E+ R+ A+ RR V+ ++ Sbjct: 71 AYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALLRRANIVAQHQLII 130 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + D E + P++E R+L +L++ + + ++ +I+G+ D ++E Sbjct: 131 GNTCLNEDELSLEYFEQEIIFPQKEFRVLFHLLSYPNRIFTRLELLDSIWGM-DTDLDER 189 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VV++ I+K+R+K+ + F +++ R +GY Sbjct: 190 VVDACINKIRRKVEHLPDF-KIETVRGVGY 218 >gi|313679064|ref|YP_004056803.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313151779|gb|ADR35630.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 8/126 (6%) Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG 144 T + + G DD + KP E ARV A+ RR + R GP+ + S+G ++G Sbjct: 84 HTKVYCLEIGADDYMTKPFSVLEFTARVQALLRR-SYGSPRIRVGPLELDSEGYRATLEG 142 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRN 203 L + E +L L + G+ +++++ A++GL FD + VV+ +I+ LRK Sbjct: 143 RELKLSKTEFALLRTLASAPGRVWSRSELLEAVWGLTFDGT--DRVVDVYINMLRK---- 196 Query: 204 KLGFDP 209 KLG DP Sbjct: 197 KLGDDP 202 >gi|293603146|ref|ZP_06685580.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC 43553] gi|292818540|gb|EFF77587.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC 43553] Length = 232 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 5/149 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130 VP+I ++ S Q +D ++G DD + KP +E++AR+ A+ RR +++++ + G Sbjct: 77 VPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRAPQLTDDVIDVGG 136 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENV 189 +++ + + E R+L + M + + +++Q+ ++G D VEE Sbjct: 137 LKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQVWG--DHVFVEERT 194 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ HI +LRK L V++ R GY Sbjct: 195 VDVHIRRLRKALEPSGHDAHVETVRGSGY 223 >gi|228941999|ref|ZP_04104542.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974930|ref|ZP_04135491.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981523|ref|ZP_04141820.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228778202|gb|EEM26472.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228784783|gb|EEM32801.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817668|gb|EEM63750.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942601|gb|AEA18497.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 67/152 (44%), Gaps = 8/152 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ TL F+ G +D V KP +LAR + KV+ Sbjct: 64 VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGANDYVTKPYSPPILLARAKRLLESRKVT 123 Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I V R V L E IL Y M N+G + + Q+ S Sbjct: 124 KQLLENEDDTLSIHDIHVHFPSRTVTVNRTDINLTHTEFEILAYFMKNQGIVLTREQLIS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 I+G ++ A ++ V SHI LR KL K + Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|229134079|ref|ZP_04262899.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228649414|gb|EEL05429.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] Length = 225 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ N Sbjct: 69 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLNADI 128 Query: 127 ET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|221234299|ref|YP_002516735.1| two-component response regulator [Caulobacter crescentus NA1000] gi|220963471|gb|ACL94827.1| two-component response regulator [Caulobacter crescentus NA1000] Length = 222 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 8/147 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133 P++ +S ++ ++G DD + KP E+LAR + RR G R+ Sbjct: 75 PVLILSARGDWTEKVEGIEAGADDYLAKPFEMGELLARARGLVRR-AAGRTSPVIGAGRL 133 Query: 134 FSDGR--DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 D R + G L E R+L+ L N G+ V+ ++ +YG+ D A + N +E Sbjct: 134 ALDTRRMSATLDGAPIRLSPLEFRLLDCLAHNPGRAVSAGELAEQLYGVADTA-DTNAIE 192 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +++LR+ K+G D ++++R GY Sbjct: 193 ALVARLRR----KIGADVIETRRGFGY 215 >gi|213966092|ref|ZP_03394280.1| two-component system response regulator TcsR5 [Corynebacterium amycolatum SK46] gi|213951290|gb|EEB62684.1| two-component system response regulator TcsR5 [Corynebacterium amycolatum SK46] Length = 230 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 25/203 (12%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA--REDVSAIEAFLIGKGEKVLELPR 65 R+L +GY +DG E L+ A R D++ ++ + L++ R Sbjct: 18 RSLTFNGYTVELAEDGA-----------EALEKIAKDRPDLAILDVMM--PKLDGLDVCR 64 Query: 66 IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 +R+ +P++ ++ S+ + D+G DD + KP E+LARV ++ RR + Sbjct: 65 RLRSEGDDLPVMMLTARDSVSERVAGLDAGADDYLPKPFALEELLARVRSLLRRSALEVP 124 Query: 125 RAETGPIRVFSD-GRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E F D DPE + EVF L R E +LE LM+N + +++T I + Sbjct: 125 AMEDAATLQFEDLSLDPETR-EVFRGERRISLTRTEFALLELLMSNPRRVLSRTAILEDV 183 Query: 178 YGLFDEAVEENVVESHISKLRKK 200 +G +D N +E +I LR+K Sbjct: 184 WG-YDFPTSGNALEVYIGYLRRK 205 >gi|188585846|ref|YP_001917391.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350533|gb|ACB84803.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 233 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 4/142 (2%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRA 126 +S+VP+I ++ + G DD V KP RE++ARV A+ RR K + Sbjct: 75 NSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRDQDFKDKDKIL 134 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 E G + V + V+ LP +E +L L+ N + + +I I+G F A Sbjct: 135 EKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEKIWG-FSFAGG 193 Query: 187 ENVVESHISKLRKKLRNKLGFD 208 V+ H+ ++RKKL + GFD Sbjct: 194 TRTVDEHVKRIRKKLEPESGFD 215 >gi|167766653|ref|ZP_02438706.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1] gi|317499486|ref|ZP_07957752.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167711776|gb|EDS22355.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1] gi|291558666|emb|CBL37466.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316893260|gb|EFV15476.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 102/224 (45%), Gaps = 11/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G D + ++ + + EE L+ + I ++ G E Sbjct: 5 LVVDDEKLIVKGIKFSLEQDEMQVDC--AYDGEEALEKAKENQYDIILLDVMLPGLTGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 + + IR S VP+I ++ + + G DD + KP + E+ AR+ AI RR Sbjct: 63 VCQAIREFSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAILRRSAHH 122 Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + S E +++ + R + G+ L +E +LE L+ + K ++ + + Sbjct: 123 DVKEEESAKVVECRGLKIDCESRRVHIHGKEVNLTAKEFDLLELLVFHPNKVYSREDLLN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 ++G +D + V+ HI +LR+K+ G D V +K +GY Sbjct: 183 TVWG-YDYPGDARTVDVHIRRLREKIEVNPGVPDYVHTKWGVGY 225 >gi|167561188|ref|ZP_02354104.1| Response regulator [Burkholderia oklahomensis EO147] Length = 240 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 10/170 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + L R +R HS +I ++ + ++ DD + KPI RE+LARV A+ RR + Sbjct: 65 ISLARELREHSTAGIIFVTQRDGDLDRVLGLETAGDDYITKPIRLRELLARVRALLRRQR 124 Query: 121 VSNNRAETGPIRVFS----DGRDPEVQ---GEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + A + F D R E+ G V PL RE +L L+ RG + + + Sbjct: 125 LYREIAPVDTVLTFDRWLIDLRRRELALSGGAVLPLTPREFDLLAALVMVRGTTLTREYL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221 + + A + V++ I++LR+K+ + G P+ + +GY +D Sbjct: 185 LEVVSK-RERATDSRTVDTLIARLRRKMSDDAGGMRCPIGTVAGIGYRLD 233 >gi|297582974|ref|YP_003698754.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141431|gb|ADH98188.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 228 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 7/166 (4%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L++ R +R + VP++ ++ + D+G DD + KP +E+LARV ++ RR Sbjct: 60 LDICRDVRQDDRLVPILILTGKGETDDIVRGLDAGADDYLVKPFEPKELLARVKSLLRRS 119 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S G + + + + GE+ RE R+L L+ +G+ +++ QI Sbjct: 120 FPYAGSTTFFTAGNTSLSPEQHEWRINGELIAAAPREIRVLSLLVHCKGQTLSREQILDP 179 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G FD + V+ H+ ++R+KLR + + R +GY I+ Sbjct: 180 VWGKDFDG--DPRTVDVHMKRIREKLRTFESDWSLVTVRGVGYRIE 223 >gi|163816389|ref|ZP_02207755.1| hypothetical protein COPEUT_02578 [Coprococcus eutactus ATCC 27759] gi|158448386|gb|EDP25381.1| hypothetical protein COPEUT_02578 [Coprococcus eutactus ATCC 27759] Length = 239 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 12/170 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE VLE IR +P+I ++ SL + SG DD + KP RE+LAR+ Sbjct: 74 GEAVLEE---IRKKGNLPVIVLTAKDSLDEKVKVLTSGADDYITKPFEIREVLARIQVQL 130 Query: 117 RRLKVSNNRAETGPIRVFSDGRDP---EVQGEVFP-LPRRERRILEYLMANRGKRVAKTQ 172 R + + R + + G++ P + R+E ILE L+ N + +K Sbjct: 131 RHTEEKEIKESNLSFREMVLNKATFQVSIGGKILPKITRQEFAILELLLRNPKQVFSKED 190 Query: 173 IFSAIYGLFDEAV--EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 IF + DE E ++ HIS +RKK++ + +++ +GY + Sbjct: 191 IFEYAW---DEPYMGETKTLDVHISNIRKKIKTVTSEEYIETVWGIGYRL 237 >gi|160894855|ref|ZP_02075629.1| hypothetical protein CLOL250_02405 [Clostridium sp. L2-50] gi|156863286|gb|EDO56717.1| hypothetical protein CLOL250_02405 [Clostridium sp. L2-50] Length = 239 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 12/170 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE VLE IR +P+I ++ SL + SG DD + KP RE+LAR+ Sbjct: 74 GEAVLEE---IRKKGNLPVIVLTAKDSLDEKVKVLTSGADDYITKPFEIREVLARIQVQL 130 Query: 117 RRLKVSNNRAETGPIRVFSDGRDP---EVQGEVFP-LPRRERRILEYLMANRGKRVAKTQ 172 R + + R + + G++ P + R+E ILE L+ N + +K Sbjct: 131 RHTEEKEIKESNLSFREMVLNKATFQVSIGGKILPKITRQEFAILELLLRNPKQVFSKED 190 Query: 173 IFSAIYGLFDEAV--EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 IF + DE E ++ HIS +RKK++ + +++ +GY + Sbjct: 191 IFEYAW---DEPYMGETKTLDVHISNIRKKIKTVTSEEYIETVWGIGYRL 237 >gi|329925047|ref|ZP_08279991.1| heme response regulator HssR [Paenibacillus sp. HGF5] gi|328940166|gb|EGG36498.1| heme response regulator HssR [Paenibacillus sp. HGF5] Length = 225 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 15/214 (7%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L +GY L DG EE A E V ++ + +L IR Sbjct: 21 LQTEGYTVLTASDG-----------EEASVLLAEEQVHLAVVDVMMPNKDGYQLCEEIRR 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128 + VP+I ++ L F G DD + KP RE+L R+ A+ RR + VS ++ Sbjct: 70 YYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLRRYQMVSADKIRL 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187 + + + G+V LP +E +L L + + ++ ++ I+G FD ++ Sbjct: 130 NETTIDRKSYEVQGHGKVLMLPMKEFELLSQLASYPDRTFSREELIQLIWGTDFDG--DD 187 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V+ HI +LR++ ++ G + + R +GY ++ Sbjct: 188 RTVDVHIKRLRERFADRRGDFRIRTIRGVGYKLE 221 >gi|324112281|gb|EGC06259.1| response regulator receiver domain-containing protein [Escherichia fergusonii B253] Length = 223 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 13/223 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G ++ E S + ++ L + + + Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQFLESGHYSLVVLDLGLPDE-DGLH 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L RI + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 62 FLARIRQKKHTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--- 118 Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N + E+ G +++ R + E L +E +L LM G V + +++ I Sbjct: 119 HNTQGESELNIGNLKLIMGRRQVWMGNEELILTPKEYALLSRLMLKAGSPVHREILYNDI 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Y +D N +E HI LR+K+G + + + R GY + Sbjct: 179 YN-WDNEPSTNTLEVHI----HNLRDKIGKERIRTVRGFGYML 216 >gi|322373251|ref|ZP_08047787.1| DNA-binding response regulator YycF [Streptococcus sp. C150] gi|321278293|gb|EFX55362.1| DNA-binding response regulator YycF [Streptococcus sp. C150] Length = 228 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 14/204 (6%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 I+D +++ LF + ++ ++ E E QS D+ ++ L GKG + E+ Sbjct: 7 IEDNEDIQNILFNLFSGEHDIIQAYSGTEGELLFQSQEI-DLVLLDIMLPGKGGE--EVL 63 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 + IR S VP+I ++ + G +D + KP E+ ARV+ R + Sbjct: 64 KFIRQRSSVPVIMLTALGDKHLISQYLLDGANDYIVKPFDLEEVYARVSVQLREHSKGSG 123 Query: 125 RA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R + I + D + QG+V L ++E +I L+ N K K ++ ++ Sbjct: 124 RPDNIYQVKNITINPDSFEVSCQGKVIRLGKKEFQIFHTLLQNPKKIFTKEDLYETVW-- 181 Query: 181 FDEA---VEENVVESHISKLRKKL 201 EA +N + + +S LRKKL Sbjct: 182 --EAPYLSGDNTLNAQLSNLRKKL 203 >gi|295093005|emb|CBK82096.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 228 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 10/166 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ +++R S VP+I ++ + + G DD + KP + E+ AR+ AI RR Sbjct: 61 IEVCQMVREFSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRSN 120 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +N E ++V D R V G+ L +E +LE LMA+ K ++ ++ Sbjct: 121 RKQAPAKPSNVMEINGMKVELDSRRVFVGGKELNLTAKEFDLLELLMAHPNKVYSRNELL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGY 218 + I+G + V+ H+ +LR+K+ G +PV +K +GY Sbjct: 181 NTIWG-DSYPGDARTVDVHVRRLREKIEANPG-EPVYIHTKWGVGY 224 >gi|268319166|ref|YP_003292822.1| two-component system response regulator [Lactobacillus johnsonii FI9785] gi|262397541|emb|CAX66555.1| two-component system response regulator [Lactobacillus johnsonii FI9785] Length = 221 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 DSG DD + KP +E+LAR+ + RR + + N E G + + V L Sbjct: 91 LDSGADDYLTKPFSLKELLARLRSKERRDDQYTPNEVEVGDL-ALNVAEQELVSHNSIRL 149 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 +E ++L YLM N GK + + + + ++ DEA E+VV +IS LR+KL++ Sbjct: 150 GSKETQLLNYLMLNEGKEFSTSDLLAHVWKDDDEA-SEDVVWIYISYLRQKLQS 202 >gi|302873161|ref|YP_003841794.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307688674|ref|ZP_07631120.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302576018|gb|ADL50030.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 230 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 5/145 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ IR S P+I I+ + +SG DD + KP E++AR+ A+ RR+ Sbjct: 62 IEVCNRIREKSNTPIIMITAKSEDADKILGLNSGADDYIIKPFSPGEVVARIKAVLRRIT 121 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + P+ + + ++ GE L ++E +L L ++ K + + + Sbjct: 122 PVENSTLSVVKYPPMEIDINNYSVKIHGENINLTKKEIEVLWMLTSSPNKVIKRDDLLDN 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 I+G+ D + V++HI ++R KL Sbjct: 182 IWGI-DYFGDPRTVDTHIKRIRAKL 205 >gi|268591078|ref|ZP_06125299.1| transcriptional activator protein Irlr [Providencia rettgeri DSM 1131] gi|291313885|gb|EFE54338.1| transcriptional activator protein Irlr [Providencia rettgeri DSM 1131] Length = 223 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/160 (21%), Positives = 82/160 (51%), Gaps = 1/160 (0%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +I+R +P+I ++ ++ + + G +D + KP E+LARV + + Sbjct: 61 EILKILRTAKNIPVICLTARDAVDDRIKGLELGANDYLVKPFSFSELLARVKNQLKINQP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ +++ D E G+ L R+E +L + + + + + +T I S ++G+ Sbjct: 121 ASTTITIADLKIDLTRHDVERAGKKITLTRQEFSLLLFFVLHCDEILPRTLIASEVWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + N+++ I +LRKK+ ++ +++ R +GY ++ Sbjct: 180 DFESDTNIIDVAIRRLRKKIDDEFDVKLIETIRGMGYRLN 219 >gi|187777705|ref|ZP_02994178.1| hypothetical protein CLOSPO_01297 [Clostridium sporogenes ATCC 15579] gi|187774633|gb|EDU38435.1| hypothetical protein CLOSPO_01297 [Clostridium sporogenes ATCC 15579] Length = 227 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 7/167 (4%) Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E EL R I +P+I ++ + + + G DD + KP + +E+L RV R Sbjct: 59 ENGFELCRYINNKYCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIR 118 Query: 118 RLKVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R+ ++E ++V +GR E L +E +LE+ + NR ++ Sbjct: 119 RVNKYKEKSEEEFIYINKFVKVNLEGRIVFKDDEEVKLKPQEYELLEFFIKNRNIVFSRE 178 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I + ++G FD E V+ H+ +LR KL + +D+ +GY Sbjct: 179 IILNKVWG-FDYEGEVRTVDVHVRRLRSKLDKENATSIIDTVFGIGY 224 >gi|206969897|ref|ZP_03230851.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228955094|ref|ZP_04117109.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229048515|ref|ZP_04194077.1| Two-component response regulator [Bacillus cereus AH676] gi|229072320|ref|ZP_04205524.1| Two-component response regulator [Bacillus cereus F65185] gi|229082069|ref|ZP_04214555.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|229112277|ref|ZP_04241816.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229181134|ref|ZP_04308466.1| Two-component response regulator [Bacillus cereus 172560W] gi|206735585|gb|EDZ52753.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228602325|gb|EEK59814.1| Two-component response regulator [Bacillus cereus 172560W] gi|228671117|gb|EEL26422.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228701238|gb|EEL53738.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228710745|gb|EEL62716.1| Two-component response regulator [Bacillus cereus F65185] gi|228722831|gb|EEL74214.1| Two-component response regulator [Bacillus cereus AH676] gi|228804604|gb|EEM51208.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 8/150 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S+VP+I ++ TL F+ G DD V KP +LAR + K S Sbjct: 66 RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKASKK 125 Query: 125 RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E I V R V L E IL Y M N+G + + Q+ S I Sbjct: 126 PLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLISRI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207 +G ++ A ++ V SHI LR KL K + Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|328955674|ref|YP_004373007.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] gi|328455998|gb|AEB07192.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] Length = 241 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 9/158 (5%) Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 I R +P+I ++ T+ G DD + KP RE++AR+A RR + + + Sbjct: 83 IKREQPDLPVIFLTASDDEFNTVTGLTMGADDYIAKPFRPRELIARIATAIRRAQPNARK 142 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 GP+ + ++ E G L E R+L N G+ V + I A++ + Sbjct: 143 VFFGPLAIDTERAHVERDGCELILSALEYRLLLLFATNPGRLVTREMIREALWDDAGAYI 202 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGY 218 EEN + +I K+LR+++ DP K R +GY Sbjct: 203 EENTLSVYI----KRLRDRIEDDPAHPKMITTVRGMGY 236 >gi|312144339|ref|YP_003995785.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] gi|311904990|gb|ADQ15431.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] Length = 235 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 12/151 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDF---FDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R +RA ++ I I + L+ + G DD + KP RE++AR+ AI+R Sbjct: 60 MEVCRRLRADEKLKKIAIIMLTAKGEELERILGLEMGADDYMTKPFSPRELIARIKAIFR 119 Query: 118 RLK--------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 R++ + + G ++ + + + E L +E +L YL+ N+G+ ++ Sbjct: 120 RMEELKLDKDTIKDEIIIAGDFKIDISRHEVKFKDENISLTLKEFELLRYLILNQGRVLS 179 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 + + I+G ++ A + V+ HI +LRKK Sbjct: 180 RNLLLEKIWG-YEYAGDTRTVDVHIRRLRKK 209 >gi|312867237|ref|ZP_07727447.1| response regulator protein GraR [Streptococcus parasanguinis F0405] gi|311097366|gb|EFQ55600.1| response regulator protein GraR [Streptococcus parasanguinis F0405] Length = 225 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP +LA+V + RR Sbjct: 67 IRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKVQGLLRRSYEFGTDQ 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N E + D +GEV L + E +IL L + G VA+ + ++ D Sbjct: 127 NLLEHRGAILNLKSTDLVYEGEVIKLTKNEFQILRVLFEHAGSIVARDDMMKELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEEAGLSNFIETKKGIGYGL 222 >gi|256545415|ref|ZP_05472777.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus vaginalis ATCC 51170] gi|256398811|gb|EEU12426.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus vaginalis ATCC 51170] Length = 237 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 13/151 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + IR S VP+I ++ S + ++ G DD V KP +E++ R+ + RR++ Sbjct: 64 DLIKEIRNKSNVPVIMVTAKVSEENIINGLKLGADDYVTKPFSPKELMQRIKTVLRRIEK 123 Query: 122 SN-NRAETGPIRVFSDGR---DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N RA+ I +DGR D E GE L + E +I++ L +N K + + Sbjct: 124 YNIPRAD---IIKTTDGRLEMDLEYNRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREE 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 I +G FD + +++HI +R+K+ + Sbjct: 181 IIEITFG-FDYDAYDRAIDTHIKNIRQKIED 210 >gi|229147384|ref|ZP_04275733.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|296505274|ref|YP_003666974.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|228636066|gb|EEK92547.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|296326326|gb|ADH09254.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 8/150 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S+VP+I ++ TL F+ G DD V KP +LAR + K S Sbjct: 66 RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKASKK 125 Query: 125 RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E I V R V L E IL Y M N+G + + Q+ S I Sbjct: 126 PLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLISRI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207 +G ++ A ++ V SHI LR KL K + Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|269797462|ref|YP_003311362.1| transcriptional regulator [Veillonella parvula DSM 2008] gi|282849136|ref|ZP_06258521.1| response regulator receiver domain protein [Veillonella parvula ATCC 17745] gi|313893989|ref|ZP_07827555.1| sensory transduction protein RegX3 [Veillonella sp. oral taxon 158 str. F0412] gi|269094091|gb|ACZ24082.1| two component transcriptional regulator, winged helix family [Veillonella parvula DSM 2008] gi|282580840|gb|EFB86238.1| response regulator receiver domain protein [Veillonella parvula ATCC 17745] gi|313441553|gb|EFR59979.1| sensory transduction protein RegX3 [Veillonella sp. oral taxon 158 str. F0412] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 12/162 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI---YRR 118 E+ R IR +VP++ ++ + G DD + KP ++A++ A+ Y+R Sbjct: 63 EVCRQIRDKVRVPIVMVTARLDDIDKIRGLGVGADDYIEKPFSPSVLIAKIKAMLAQYKR 122 Query: 119 LK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 L + N ++G IR+ V + L ++E ++LE+LM NR +K +++ Sbjct: 123 LTERDAMETNAIQSGEIRLDPKMMKVWVNEKEVHLKKKEFQLLEFLMRNRDIVFSKEELY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 S ++GL D + V HI++LR+++ + +P DSK + Sbjct: 183 SRVWGL-DSYGDYATVAVHINRLREEIED----NPSDSKHII 219 >gi|156740441|ref|YP_001430570.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156231769|gb|ABU56552.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 245 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 6/143 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125 IR S VP+I ++ + F+ G DD + KP E++ARV AI RR++ +R Sbjct: 84 IRERSDVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRRVEGYKHRV 143 Query: 126 ----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G I + V+G+ L E +L +L AN G + +F ++G + Sbjct: 144 APPIVRVGEIEIDEPRHRVTVRGKEVNLTPMEFELLYFLAANAGHVFDRETLFREVWG-Y 202 Query: 182 DEAVEENVVESHISKLRKKLRNK 204 D E N+V+ + +LR+K+ ++ Sbjct: 203 DYVGETNLVDVCVRRLREKVESE 225 >gi|219850126|ref|YP_002464559.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219544385|gb|ACL26123.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 245 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 4/140 (2%) Query: 65 RIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +RA S+ +P+I ++ +Q + G DD + KP E+LARV AI+RR +S Sbjct: 80 RRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGISR 139 Query: 124 --NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + + R+ + G L E +LE M + + + + S ++G F Sbjct: 140 PVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVWG-F 198 Query: 182 DEAVEENVVESHISKLRKKL 201 + N+VE HIS LR+K+ Sbjct: 199 TYVGDSNIVEVHISNLREKI 218 >gi|27382389|ref|NP_773918.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27355560|dbj|BAC52543.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 230 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 76/150 (50%), Gaps = 5/150 (3%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAETGPI 131 P + IS + + +G DD + KP E+LAR+ A+ RR + G + Sbjct: 79 PFLIISALGEVDDRVRGLRAGGDDYLVKPFSFVELLARLEALGRRSETIAKETLLRVGDL 138 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190 + R+ +G PL RE ++LEYL+ N G+ V++ + ++ L FD + N++ Sbjct: 139 AIDLIARNASRRGRKIPLLPREFQLLEYLVRNEGRVVSRAMLLQHVWDLHFDPST--NII 196 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ ++R+K+ + + + + R +GY + Sbjct: 197 DVYVGRVRRKVDDAQAYPLIHTIRGIGYCL 226 >gi|94984238|ref|YP_603602.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554519|gb|ABF44433.1| two component transcriptional regulator PhoB [Deinococcus geothermalis DSM 11300] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 88/193 (45%), Gaps = 20/193 (10%) Query: 38 LQSSAREDVSAIEAFLIGK----------GEKVLELPRIIRAHSQV---PLIGISDYPSL 84 L+ SA E V + L G GE L R +R ++ P++ ++ + Sbjct: 26 LRVSALESVQGAQETLRGADALVLDWMLPGESGLAYLRRLRGDPELRRLPVLMLTARAAE 85 Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQ 143 ++ +SG DD + KP E++ARV A+ RR + + + GP+ + + + Sbjct: 86 AERVEGLESGADDYLTKPFSAAELVARVRALLRRAQPDTPQQLSHGPLSMDLGAAEARLA 145 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 G L RRE +L +L N G+ +T++ ++G D E V+ H+++LR Sbjct: 146 GIRLHLTRREFDLLAFLTQNAGRVYTRTELLDRVWG-ADFLGGERTVDQHVTQLRA---- 200 Query: 204 KLGFDPVDSKRFL 216 LG DP RFL Sbjct: 201 HLGDDPA-RPRFL 212 >gi|319793165|ref|YP_004154805.1| two component transcriptional regulator phob, winged helix family [Variovorax paradoxus EPS] gi|315595628|gb|ADU36694.1| two component transcriptional regulator PhoB, winged helix family [Variovorax paradoxus EPS] Length = 230 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 7/133 (5%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFP 148 D+G DD + KP +E+LAR+ A+ RR +V R E G + + + QG Sbjct: 96 LDAGADDYITKPFSTQEMLARIRAVLRRRAPEVVTERVEIGELALDTSTHRVTWQGGALK 155 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLGF 207 + E ++L YLM + + ++ Q+ ++G D +EE V+ H+ +LR+ L Sbjct: 156 VGPTEFKLLAYLMQHAERVHSRAQLLDKVWG--DHVYIEERTVDVHVKRLRESLGAAAPM 213 Query: 208 DPVDSKRFLGYSI 220 V++ R GY + Sbjct: 214 --VETVRGAGYRL 224 >gi|313200852|ref|YP_004039510.1| winged helix family two component transcriptional regulator [Methylovorus sp. MP688] gi|312440168|gb|ADQ84274.1| two component transcriptional regulator, winged helix family [Methylovorus sp. MP688] Length = 233 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 73/162 (45%), Gaps = 12/162 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ R IR+ S VP+I +S + D+G DD + KP E+LAR+ A RR Sbjct: 64 IDVIRQIRSWSNVPMIVLSARTQEAQKVSALDAGADDYLTKPFGTAELLARIRAQLRRHS 123 Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + N A+ G IRV R G + L E R+L L+ G+ V + Q+ Sbjct: 124 QAGNAAQESVFTMGDIRVDLVNRQVHRGGALVSLTPIEFRLLATLIRYAGRVVTQRQLLK 183 Query: 176 AIYGLFDEAVEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216 ++G ++ H ++ LR+KL DP + L Sbjct: 184 EVWG------PSHIESGHYVRIYMGHLRHKLEADPAQPRYLL 219 >gi|296315110|ref|ZP_06865051.1| DNA-binding response regulator [Neisseria polysaccharea ATCC 43768] gi|296838023|gb|EFH21961.1| DNA-binding response regulator [Neisseria polysaccharea ATCC 43768] Length = 224 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 105/226 (46%), Gaps = 23/226 (10%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D A++ + A D G +++ + ++ D+ ++ L G+ + + Sbjct: 4 LLVEDDAMIAEAVSANLKDGGYAVDWVKNGAQVAAAAAAQPYDLMLLDLGLPGR-DGLDV 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 L I A VP++ ++ L + L+ D G DD + KP E+ AR+ A+ RR Sbjct: 63 LSEIRAAGCTVPVLIVTARDDLYSRLNGLDGGADDYIVKPFDMAELKARMRAVLRRGGGQ 122 Query: 119 --LKVSNNRAETGP----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + +SN P + ++GR L +E +L+ L+A G ++++ Sbjct: 123 GQVCLSNGVISLNPATYQAEIIAEGRQ-------VALSNKEFAVLQALLARPGVILSRSD 175 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +YG + E VE N V+ I LRK KLG + + + R +G+ Sbjct: 176 LEDKVYG-WGEEVESNAVDFLIHALRK----KLGKESIQNVRGVGW 216 >gi|290958605|ref|YP_003489787.1| two component system reponse regulator [Streptomyces scabiei 87.22] gi|260648131|emb|CBG71239.1| putative two component system reponse regulator [Streptomyces scabiei 87.22] Length = 242 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 11/158 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + +R SQVP+I IS + + G DD V+KP RE++AR+ A+ RR++ Sbjct: 58 LDVCKALRDRSQVPIIVISARSDETDRVVGLELGADDYVSKPFGVREVIARIRAVMRRVQ 117 Query: 121 VSNNRAETGP----IRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A GP R+ D + V G L +E +L +L G +++ QI Sbjct: 118 PRAADAPAGPDRYGPRLTVDRKAARVHLDGTEVGLAPKEYDLLAFLTEEPGALMSREQIM 177 Query: 175 SAIY--GLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 A++ F ++ H++ LR+KL + + V Sbjct: 178 EAVWDANWFGPT---KTLDVHVAALRRKLAGAITIEAV 212 >gi|229187481|ref|ZP_04314623.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228596002|gb|EEK53680.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] Length = 202 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R + +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 39 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 98 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 99 KAEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 158 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 159 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 201 >gi|254511016|ref|ZP_05123083.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11] gi|221534727|gb|EEE37715.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11] Length = 221 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 16/172 (9%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G LE R S+ P+I ++ + + D G DD + KPI E+ AR A Sbjct: 57 GDGRTFLERRR--NQDSRTPVIVLTARSEVADRVGILDLGADDYMVKPIDFSELEARCRA 114 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRV 168 + RR E + + D + G ++ L RE R+ E L GK Sbjct: 115 VLRR-----RGGEARNLLILGDMSFDSLSGTLKTGEDIIQLRARELRLFETLANAPGKVF 169 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +K + + + +DE V EN +E +I +LRK L+N + + R LGY + Sbjct: 170 SKASLVNQLVS-YDEDVSENAIEVYIGRLRKHLQNS--SVTITTIRGLGYKL 218 >gi|190575618|ref|YP_001973463.1| putative two-component system response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|194366953|ref|YP_002029563.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|254521817|ref|ZP_05133872.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|144897135|emb|CAM73999.1| two-component system regulatory protein [Magnetospirillum gryphiswaldense MSR-1] gi|190013540|emb|CAQ47175.1| putative two-component system response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] gi|194349757|gb|ACF52880.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] gi|219719408|gb|EED37933.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 225 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 5/163 (3%) Query: 61 LELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +E+ R +R A Q P++ ++ SL L FDSG DD + KP +E+ R+ A+ RR Sbjct: 60 IEVCRKLRNEARKQTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQEVEVRLNALSRR 119 Query: 119 LKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K R ETG + D + QG++ L +IL+ LM V + ++ + + Sbjct: 120 GKGVQTRVLETGDLEYNLDTLEVRRQGKLLQLNPTALKILQALMEAAPAVVTRQELETRV 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +E + + + HI LR + + ++ +GY I Sbjct: 180 WG--EELPDSDSLRVHIHGLRAVVDKPFEVPLIQTRHGIGYRI 220 >gi|152989694|ref|YP_001350106.1| two-component response regulator [Pseudomonas aeruginosa PA7] gi|150964852|gb|ABR86877.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 223 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 80/160 (50%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ +P++ ++ ++ + + G DD + KP E+ ARV A+ RR + Sbjct: 63 LARLRGRGKTLPVLMLTARGEVKDRVHGLNLGADDYLAKPFELSELEARVKALLRRSMLG 122 Query: 123 NNRAETGPIRVFSDG-RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + G R + + L RE+ +LE ++A G+ ++K Q+ + ++GL Sbjct: 123 GEQVQRCGALAYDLGTRRFSLDEQPLILTSREQAVLEAMIARPGRVMSKEQLAAQVFGL- 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + +E ++ +LRKKL G + + R LGY ++ Sbjct: 182 DEEASADAIEIYVHRLRKKLEG--GAVRIVTFRGLGYLLE 219 >gi|116627234|ref|YP_819853.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|116100511|gb|ABJ65657.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 79/166 (47%), Gaps = 9/166 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G D+ + KP E+LAR+ A +RR + Sbjct: 63 EVTRRLQQEKDTYIMMMTARDSIMDIVAGLDRGADEYIIKPFAIEELLARIRATFRRQDI 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-------EVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + D + +VQ EV PL +RE +L L++N + + + ++ Sbjct: 123 EATKKAPAKASTYRDLK-LDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D+ +E NVV+ +I LR K+ + + R +GY I Sbjct: 182 LQVWK-YDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226 >gi|299537808|ref|ZP_07051097.1| two component transcriptional regulator, winged helix family protein [Lysinibacillus fusiformis ZC1] gi|298726787|gb|EFI67373.1| two component transcriptional regulator, winged helix family protein [Lysinibacillus fusiformis ZC1] Length = 233 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 75/144 (52%), Gaps = 3/144 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IR S V +I ++ ++ L+ F+ G DD + KP +E+LAR+ A +R Sbjct: 64 ELAKSIRDVSDVIIIFVTVNHLIEQKLEGFEVGADDYMTKPFIPKELLARIQAHLKRRNP 123 Query: 122 S--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S +N + + D ++ G++ L +E+ +L +L+ + + ++ Q+ ++G Sbjct: 124 SKKSNIVHIDNLSIHLDEKNVYKDGQLLNLFTKEKLLLFFLIEHANQVISVDQLIDHVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRN 203 +D + V HIS LR+K+ + Sbjct: 184 -YDGVPDLKTVSVHISTLRRKIED 206 >gi|294508522|ref|YP_003572581.1| response regulator DrrA [Salinibacter ruber M8] gi|294344851|emb|CBH25629.1| response regulator DrrA [Salinibacter ruber M8] Length = 246 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 8/151 (5%) Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPI 131 L G+ D+ + + F G DD + KP E++AR+ + RR + + T G + Sbjct: 87 LTGLGDH---EHKMRGFQVGADDYLTKPFETEELVARIDVLLRREAEATDETGTFRVGGL 143 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 RV + D GE L E ++L YL+ RG+ + QI ++ L E VE ++ Sbjct: 144 RVDLEEDDVSRDGEPVDLTDLEYKLLAYLLRRRGRTATREQILRDVWDLPTE-VETRTID 202 Query: 192 SHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 H++ LR + + + P+ S +GY ++ Sbjct: 203 RHVNALRDVMDGEAEDEWPIQSVYGIGYKLE 233 >gi|289704826|ref|ZP_06501244.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289558442|gb|EFD51715.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 276 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 20/171 (11%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +RA S+ ++ ++ L+ G DD + KP RE++ARV A+ RR + Sbjct: 112 IEVCRRVRAFSECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPR 171 Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + E P RV D + V G+V L R E +L L + ++ Q+ Sbjct: 172 TTVSAPE--PERVCGDLVIDLAAHEARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLI 229 Query: 175 SAIYGLFDEAV--EENVVESHISKLRKKLRNKLGFDP---VDSKRFLGYSI 220 ++ D A +E +V+ HI K LR KL DP +D+ R +GY + Sbjct: 230 DIVW---DPAWVGDERLVDVHI----KNLRRKLDADPARYIDTVRGVGYRM 273 >gi|238020067|ref|ZP_04600493.1| hypothetical protein VEIDISOL_01947 [Veillonella dispar ATCC 17748] gi|237863591|gb|EEP64881.1| hypothetical protein VEIDISOL_01947 [Veillonella dispar ATCC 17748] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 12/162 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI---YRR 118 E+ R IR +VP++ ++ + G DD + KP ++A++ A+ Y+R Sbjct: 63 EVCRQIRDKVRVPIVMVTARLDDIDKIRGLGVGADDYIEKPFSPSVLIAKIKAMLAQYKR 122 Query: 119 LK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 L + N ++G IR+ V + L ++E ++LE+LM NR +K +++ Sbjct: 123 LTERDAMETNAIQSGEIRLDPKMMKVWVNEKEVHLKKKEFQLLEFLMRNRDIVFSKEELY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 S ++GL D + V HI++LR+++ + +P DSK + Sbjct: 183 SRVWGL-DSYGDYATVAVHINRLREEIED----NPSDSKHII 219 >gi|228923193|ref|ZP_04086483.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836399|gb|EEM81750.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 248 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 78 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 137 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N+ + +F E QG+ L + E +LE LM + V + ++ A Sbjct: 138 SAAENDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLEA-- 195 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 196 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 238 >gi|218551391|ref|YP_002385183.1| DNA-binding transcriptional regulator BasR [Escherichia fergusonii ATCC 35469] gi|218358933|emb|CAQ91593.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia fergusonii ATCC 35469] gi|325499660|gb|EGC97519.1| DNA-binding transcriptional regulator BasR [Escherichia fergusonii ECD227] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 13/223 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G ++ E S + ++ L + + + Sbjct: 9 ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQFLESGHYSLVVLDLGLPDE-DGLH 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L RI + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 68 FLARIRQKKHTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR--- 124 Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N + E+ G +++ R + E L +E +L LM G V + +++ I Sbjct: 125 HNTQGESELNIGNLKLIMGRRQVWMGNEELILTPKEYALLSRLMLKAGSPVHREILYNDI 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Y +D N +E HI LR+K+G + + + R GY + Sbjct: 185 YN-WDNEPSTNTLEVHI----HNLRDKIGKERIRTVRGFGYML 222 >gi|15804969|ref|NP_291011.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 EDL933] gi|15834610|ref|NP_313383.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 str. Sakai] gi|168750963|ref|ZP_02775985.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC4113] gi|168756818|ref|ZP_02781825.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC4401] gi|168762752|ref|ZP_02787759.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC4501] gi|168766682|ref|ZP_02791689.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC4486] gi|168776622|ref|ZP_02801629.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC4196] gi|168781690|ref|ZP_02806697.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC4076] gi|168785043|ref|ZP_02810050.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC869] gi|168797973|ref|ZP_02822980.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC508] gi|195937669|ref|ZP_03083051.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 str. EC4024] gi|208809655|ref|ZP_03251992.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC4206] gi|208812237|ref|ZP_03253566.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC4045] gi|208820456|ref|ZP_03260776.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC4042] gi|209399995|ref|YP_002273919.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC4115] gi|217325103|ref|ZP_03441187.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. TW14588] gi|254796394|ref|YP_003081231.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 str. TW14359] gi|261226756|ref|ZP_05941037.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli O157:H7 str. FRIK2000] gi|261255160|ref|ZP_05947693.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli O157:H7 str. FRIK966] gi|12519430|gb|AAG59578.1|AE005671_2 catabolic regulation response regulator [Escherichia coli O157:H7 str. EDL933] gi|13364834|dbj|BAB38779.1| catabolic regulation response regulator [Escherichia coli O157:H7 str. Sakai] gi|187768032|gb|EDU31876.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC4196] gi|188014947|gb|EDU53069.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC4113] gi|189000768|gb|EDU69754.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC4076] gi|189356081|gb|EDU74500.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC4401] gi|189364332|gb|EDU82751.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC4486] gi|189366953|gb|EDU85369.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC4501] gi|189374813|gb|EDU93229.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC869] gi|189379581|gb|EDU97997.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC508] gi|208729456|gb|EDZ79057.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC4206] gi|208733514|gb|EDZ82201.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC4045] gi|208740579|gb|EDZ88261.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC4042] gi|209161395|gb|ACI38828.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. EC4115] gi|209748778|gb|ACI72696.1| catabolic regulation response regulator [Escherichia coli] gi|209748780|gb|ACI72697.1| catabolic regulation response regulator [Escherichia coli] gi|209748782|gb|ACI72698.1| catabolic regulation response regulator [Escherichia coli] gi|209748786|gb|ACI72700.1| catabolic regulation response regulator [Escherichia coli] gi|217321324|gb|EEC29748.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7 str. TW14588] gi|254595794|gb|ACT75155.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli O157:H7 str. TW14359] gi|320190484|gb|EFW65134.1| Two-component response regulator CreB [Escherichia coli O157:H7 str. EC1212] gi|320643909|gb|EFX13029.1| DNA-binding response regulator CreB [Escherichia coli O157:H- str. 493-89] gi|320649067|gb|EFX17649.1| DNA-binding response regulator CreB [Escherichia coli O157:H- str. H 2687] gi|320654584|gb|EFX22596.1| DNA-binding response regulator CreB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320665393|gb|EFX32477.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 str. LSU-61] gi|326345287|gb|EGD69030.1| Two-component response regulator CreB [Escherichia coli O157:H7 str. 1125] gi|326346859|gb|EGD70593.1| Two-component response regulator CreB [Escherichia coli O157:H7 str. 1044] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ V + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 + + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ + Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDIV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|329113654|ref|ZP_08242430.1| Transcriptional regulatory protein QseB [Acetobacter pomorum DM001] gi|326697014|gb|EGE48679.1| Transcriptional regulatory protein QseB [Acetobacter pomorum DM001] Length = 223 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 7/129 (5%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPR 151 G DD + KP E++AR+AA+ RR +A + G I + + R L Sbjct: 94 GADDYIVKPYDLNELVARIAAVARRYVTPRRQACYQIGEIVIDRENRSVMRNEMELELTA 153 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 RE I+E L G+ ++ QI +A+Y L D+ V N VE IS+LRKK+ N + + Sbjct: 154 REWAIMELLSRRPGRIYSRHQIDTALYAL-DQDVGSNTVEVFISRLRKKVGNTV----IK 208 Query: 212 SKRFLGYSI 220 + R GY + Sbjct: 209 TVRGRGYCL 217 >gi|322389056|ref|ZP_08062622.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321144234|gb|EFX39646.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 225 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP +LA+V + RR Sbjct: 67 IRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKVQGLLRRSYEFGTDQ 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N E + D +GEV L + E +IL L + G VA+ + ++ D Sbjct: 127 NLLEHRGAILNLKSTDLVYEGEVIKLTKNEFQILRVLFEHAGSIVARDDMMKELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEEAGLSNFIETKKGIGYGL 222 >gi|303256046|ref|ZP_07342068.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae BS455] gi|302596962|gb|EFL64086.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae BS455] Length = 235 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 11/120 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKV------SNNRAET----GPIRVFSDGRDPEVQ 143 G DD + KP RE+LARV A+ RR K S+N A+ G ++V+ + + Sbjct: 96 GADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNIADDSWLFGTLKVYPERHEVYKA 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ L +E +L YLM + + + ++ I+G +D E +V+ HI KLR+K+ + Sbjct: 156 NKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKIED 214 >gi|319762980|ref|YP_004126917.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330825060|ref|YP_004388363.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117541|gb|ADV00030.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329310432|gb|AEB84847.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 226 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 83/161 (51%), Gaps = 5/161 (3%) Query: 65 RIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +RA + +P++ ++ +L + + G DD + KP E+ AR+ A+ RR + S Sbjct: 64 RRLRARDERIPVLVLTARDTLGERVRSLNEGADDFLAKPFELAELEARLTALVRRARGSE 123 Query: 124 N-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + R GP++ + R + E L RE +L+ L+ G+ + + Q ++G D Sbjct: 124 HPRLACGPLQFDTVTRQFTLSAEPLQLSPREHALLKALVQRSGEPLTRQQAMDRVFG-DD 182 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E V+ +V++ + +LRK+L G + + R LGY ++ + Sbjct: 183 EDVQPSVIDVLLHRLRKRLEGS-GVR-IHTYRGLGYVLELD 221 >gi|283771249|ref|ZP_06344138.1| two-component system OmpR family KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus H19] gi|283459454|gb|EFC06547.1| two-component system OmpR family KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus H19] Length = 231 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 17/192 (8%) Query: 21 DDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRAHSQVPLIG 77 D ++L+ +N E Q+ + + + L+ G + L L IR H+ +P+I Sbjct: 19 DVALTLDYYNVTTAENATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQHTDIPIIV 78 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG 137 IS QT + D+G +D + KP + E+ AR+ I R ++ + ET VF++G Sbjct: 79 ISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIER---IAKSHQETNI--VFTNG 133 Query: 138 --------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + + L E +LE L ++GK + I IYG ++ E Sbjct: 134 LLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIYGYVNKT-EMPS 192 Query: 190 VESHISKLRKKL 201 + H++ LR+KL Sbjct: 193 LRVHMTSLRQKL 204 >gi|239627112|ref|ZP_04670143.1| DNA-binding response regulator [Clostridiales bacterium 1_7_47_FAA] gi|239517258|gb|EEQ57124.1| DNA-binding response regulator [Clostridiales bacterium 1_7_47FAA] Length = 230 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/229 (23%), Positives = 105/229 (45%), Gaps = 13/229 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 + +L DD +L+ +G F G + +L+ E + S + D+ ++ L G G Sbjct: 6 ILLLEDDLSLI-NGLAFAFRKQGFETDIARTLDEAEKIWSDGKYDLLILDVSLPDGSG-- 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + +++R S+VP+I ++ + D G DD + KP +++R+ A+ RR+ Sbjct: 63 -FDFCKMVRLVSKVPVIFLTASDEETNIIMGLDMGGDDYITKPFKLGVLVSRINALLRRV 121 Query: 120 K---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K + ++ IRV G++ L E ++L M N ++K +I Sbjct: 122 KDFGTAGTELQSNGIRVLLLQGQVYKNGDLLELTAAEYKLLCLFMQNPNTVLSKEKILDK 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223 ++ ++ N + +I +LR K+ + G +P + + R +GY WN Sbjct: 182 LWDCEGSYIDNNTLTVYIRRLRMKVEDNPG-EPQMILTVRRMGYK--WN 227 >gi|229062506|ref|ZP_04199819.1| Two-component response regulator [Bacillus cereus AH603] gi|228716789|gb|EEL68480.1| Two-component response regulator [Bacillus cereus AH603] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 64/147 (43%), Gaps = 8/147 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S+VP+I ++ TL F+ G DD V KP +LAR + K S Sbjct: 66 RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKASKK 125 Query: 125 RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E I V R V L E IL Y M N+G + + Q+ S I Sbjct: 126 PLENEDDTLSIHGIHVHFPSRTVTVDEADISLTHTEFEILVYFMKNQGIVLTREQLISRI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 +G ++ A ++ V SHI LR KL K Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEK 211 >gi|229193098|ref|ZP_04320053.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228590362|gb|EEK48226.1| Two-component response regulator [Bacillus cereus ATCC 10876] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 8/150 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S+VP+I ++ TL F+ G DD V KP +LAR + K S Sbjct: 66 RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKASKK 125 Query: 125 RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E I V R V L E IL Y M N+G + + Q+ S I Sbjct: 126 PLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLISRI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207 +G ++ A ++ V SHI LR KL K + Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|226362561|ref|YP_002780339.1| OmpR family two-component response regulator [Rhodococcus opacus B4] gi|226241046|dbj|BAH51394.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] Length = 222 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 8/162 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R S +P+I ++ ++ + G DD + KP E+ AR+ + RR Sbjct: 61 LEVLRQLRQVSDIPVIILTARDDERSVVRGLRGGADDYLVKPARMAELFARIEVVRRRNL 120 Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + A TG +RV + V G L +E +LE L+ N G V++ Q+ Sbjct: 121 AARGGAPRTVVTGDVRVDLESHTVTVAGTDVDLTSKEFALLEILLENPGAAVSRQQLMDR 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G AV ++ HI LR KL N+ G V + R GY Sbjct: 181 VWGDAFVAVSRT-LDVHIGTLRAKL-NRPGL--VSTIRGFGY 218 >gi|254976600|ref|ZP_05273072.1| two-component system response regulator [Clostridium difficile QCD-66c26] gi|255093984|ref|ZP_05323462.1| two-component system response regulator [Clostridium difficile CIP 107932] gi|255315736|ref|ZP_05357319.1| two-component system response regulator [Clostridium difficile QCD-76w55] gi|255518397|ref|ZP_05386073.1| two-component system response regulator [Clostridium difficile QCD-97b34] gi|255651515|ref|ZP_05398417.1| two-component system response regulator [Clostridium difficile QCD-37x79] gi|306521334|ref|ZP_07407681.1| two-component system response regulator [Clostridium difficile QCD-32g58] Length = 224 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 14/163 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA S VPLI +S S + ++G DD + KP ++ ++ I RR+ N + Sbjct: 67 IRAISNVPLIFLSSRDSDMDLIMGINNGADDYITKPFSIDILVTKINGIIRRVY---NYS 123 Query: 127 ETGPI-----RVFSDGR---DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ I +F G+ + + + L + E +IL L+ N+ + V++ + ++ Sbjct: 124 DSNSILYCEDLMFDVGKGIIKHKYKDKSIELTKNEIKILTLLLKNKNRVVSRESLMMTLW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 DE V +N + ++++LR K++ +LGFD + +K+ +GY I Sbjct: 184 D-NDEFVTDNALTVNMNRLRSKVK-ELGFDDFIKTKKGIGYII 224 >gi|164520386|gb|ABY60248.1| PhoP [Listeria monocytogenes] gi|164520390|gb|ABY60250.1| PhoP [Listeria monocytogenes] gi|164520396|gb|ABY60253.1| PhoP [Listeria monocytogenes] gi|164520404|gb|ABY60257.1| PhoP [Listeria monocytogenes] gi|164520424|gb|ABY60267.1| PhoP [Listeria monocytogenes] gi|164520428|gb|ABY60269.1| PhoP [Listeria monocytogenes] Length = 233 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 18/122 (14%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--------------TGPIRVFSDGRD 139 G DD + KP RE++AR+ AI RR + +AE G +++ D + Sbjct: 92 GADDYMTKPFSPREVVARIKAILRR---TEGKAEIIEELTEDVEAAILIGDLKILPDSYE 148 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 +Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR Sbjct: 149 VYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRD 207 Query: 200 KL 201 K+ Sbjct: 208 KI 209 >gi|254831885|ref|ZP_05236540.1| hypothetical protein Lmon1_11050 [Listeria monocytogenes 10403S] Length = 237 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 91/189 (48%), Gaps = 16/189 (8%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 + +G +LE E +Q D+ ++ L G+ +E+ R +R +P+I ++ S Sbjct: 32 CAYDGDEALELVEEVQP----DLILLDIMLPGRDG--IEVCREVRKKYDMPIIMVTAKDS 85 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET--------GPIRVF 134 + + G DD V KP +RE++ARV A RR +VS++ AE G + + Sbjct: 86 EIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQVSSSTAEEEENSELEIGSLIIH 145 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D +GE L RE +L YL + G+ + + + ++G +D + V+ + Sbjct: 146 PDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREHLLQTVWG-YDYFGDVRTVDVTV 204 Query: 195 SKLRKKLRN 203 +LR+K+ + Sbjct: 205 RRLREKIED 213 >gi|154688064|ref|YP_001423225.1| MrsR2 [Bacillus amyloliquefaciens FZB42] gi|154353915|gb|ABS75994.1| MrsR2 [Bacillus amyloliquefaciens FZB42] Length = 240 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 14/144 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR+H+ VP++ ++ + L F G DD + KP + EI+ARV A +R+ + Sbjct: 72 IRSHTNVPILFLTAKTTDLDKLQGFSFGGDDYITKPFNPLEIVARVKAQLKRM---TQLS 128 Query: 127 ETGPIRVFSDGR----DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + P++ D DP V G P +E ++L Y + + ++K QI+ + Sbjct: 129 SSYPLKQVYDYEYFKIDPNTGRLVVNGTRIDCPAQEMKLLIYFCEHPNQILSKHQIYKDV 188 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G F ++ V H+ +LR+KL Sbjct: 189 WGEFYGG--DSTVMVHVRRLREKL 210 >gi|153854056|ref|ZP_01995389.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814] gi|149753438|gb|EDM63369.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814] Length = 233 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 11/156 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S P+I +S + + + G DD + KP +E++ARV A+ RR +V Sbjct: 64 QVCREIRTRSNTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDAKELVARVKAVLRRYQV 123 Query: 122 SNN----RAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + +A+ G I + V G +P +E +L +L ++ + + Sbjct: 124 GSKPETPQADKGKCVEYPGIEINLTNYSVIVDGHTVEMPPKELELLYFLASSPNQVFTRE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 Q+ I+G ++ + V+ HI +LR+K+++ G+ Sbjct: 184 QLLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHNGW 218 >gi|15894977|ref|NP_348326.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15024664|gb|AAK79666.1|AE007679_12 Response regulator (CheY-like receiver domain and DNA-binding HTH domain) [Clostridium acetobutylicum ATCC 824] gi|325509114|gb|ADZ20750.1| Response regulator (CheY-like receiver domain and DNA-binding HTH domain) [Clostridium acetobutylicum EA 2018] Length = 232 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 81/157 (51%), Gaps = 6/157 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAET 128 S +P+I I+ + + G DD + KP RE++ARV A+ RR KV + + Sbjct: 76 SNMPVIMITAKGEELDKILGLELGADDYITKPFSVRELVARVKAVLRRTKVDYIDKTFKF 135 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G I++ + +GE L +E +L+ L+ N+G+ + + + I+G ++ E Sbjct: 136 GNIQIDFQRHNVTKEGEKVELTLKEFELLQVLIKNKGRVMTRDFLLDKIWG-YEYIGETR 194 Query: 189 VVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223 V+ H+ LR+K+ + +P +++ R +GY +++ Sbjct: 195 TVDVHVRHLRQKIEDD-DKNPKYIETIRGIGYRFNYS 230 >gi|329115001|ref|ZP_08243756.1| Phosphate regulon transcriptional regulatory protein PhoB [Acetobacter pomorum DM001] gi|326695444|gb|EGE47130.1| Phosphate regulon transcriptional regulatory protein PhoB [Acetobacter pomorum DM001] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 4/164 (2%) Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ R +R + +P++ +S T+ D+G DD + KP + ARV A+ R Sbjct: 63 LEVCRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAMLR 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 RL ++ + + E G + L E R+LE+ M N GK ++ ++ Sbjct: 123 RLPPADKTLRFDTLVMDRVSHKVERGGRLLALGPTEYRLLEFFMLNPGKVFSREELLKHA 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + VE V+ HI +LR+ L D + + R GY++D Sbjct: 183 WE-RSSFVELRTVDVHIRRLRQTLNEGDEQDIIRTVRARGYALD 225 >gi|314939668|ref|ZP_07846893.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314943966|ref|ZP_07850667.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314953851|ref|ZP_07856714.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314993556|ref|ZP_07858912.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314997069|ref|ZP_07862059.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313588840|gb|EFR67685.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313591993|gb|EFR70838.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313594186|gb|EFR73031.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313597390|gb|EFR76235.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313641077|gb|EFS05657.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] Length = 239 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 3/151 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A +P++ I+ + F G DD + KPI E++ RV A+ RR K++ + T Sbjct: 87 ARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRRSKINYSSILT 146 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G ++ D F LP++E +L L++ K + Q+ I+GL D EE Sbjct: 147 IGQTKLELDTYTVVQNQHSFILPQKEFLLLYKLLSYPNKIFTRQQLMDDIWGL-DTNTEE 205 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ HI +LR + F + + R LGY Sbjct: 206 RTIDVHIKRLRTRFEKTEDFQII-TVRGLGY 235 >gi|332652632|ref|ZP_08418377.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332517778|gb|EGJ47381.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 222 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 87/162 (53%), Gaps = 7/162 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S +P++ ++ S L + G DD + KP + + AR++AI RR + + Sbjct: 63 ICRELRKKSDIPILVVTSRNSEVDELMSMNLGADDFIAKPYNLHILEARISAILRRSQNA 122 Query: 123 NNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R E + + QGE L + E ++L +L+ ++G V++ + ++ Sbjct: 123 QTRDVIEYKGLSLDLLSGTVSYQGENVLLTKNELKMLAFLIQHQGNIVSRDDLMEYMWS- 181 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 EA +++N + ++++LRKKL +LGF + ++++R LGY + Sbjct: 182 -SEAFIDDNNLSVNMTRLRKKLE-QLGFPETIETRRGLGYQL 221 >gi|326790239|ref|YP_004308060.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541003|gb|ADZ82862.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 236 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 77/165 (46%), Gaps = 13/165 (7%) Query: 66 IIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 I R H Q VP++ +S + + G DD + KP RE++ARV AI RR Sbjct: 68 IFRNHEQLGCVPVLLVSAKAEEIDKILGLELGADDYITKPFSVRELVARVKAILRRADRN 127 Query: 120 KVSNNRAETGPIRVFSDGR-DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +V + E V D + D E + E L +E IL+ LM+N+GK + + I Sbjct: 128 EVPTKKTEEDHFLVHQDLKLDIESHLLTFKDEPIELTYKEFEILKLLMSNKGKVLTREVI 187 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G +D E V+ HI LR K + +++ R +GY Sbjct: 188 LDKVWG-YDYYGETRTVDVHIRYLRAKFEAYGIGEYIETVRGVGY 231 >gi|291535233|emb|CBL08345.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 228 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 5/138 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNN 124 R +P++ I+ +L ++ D G DD + KP H +E+LARV A+ RR +++S + Sbjct: 70 RKGISIPILIITAMSTLDNRVEGLDGGADDYLVKPFHIKELLARVRALTRRPANIQLS-S 128 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + + G + D R L +E + M N ++ Q+ I+G E Sbjct: 129 KLQYGDLTFDKDSRTLSTPVNSILLTSKETELTFVFMQNPETLFSREQLILKIWGSSSE- 187 Query: 185 VEENVVESHISKLRKKLR 202 VE V+S+IS LRK+L+ Sbjct: 188 VETGNVDSYISFLRKRLK 205 >gi|268608227|ref|ZP_06141954.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 262 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 3/141 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121 + R IR S +P+I I+ + + +D G DD + KP + + A+ +R K+ Sbjct: 104 ICRSIRKRSDIPVIFITARGREEDMIFGYDLGCDDYIVKPFLLSVLYMKCEAMMKRADKL 163 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S E G IR+ + + + LP +E IL YLM ++ + + I + ++G Sbjct: 164 SGQTVLECGAIRLDTRMLCCFINEKEIELPPKEFAILRYLMEHQDWTIDRDTILNRVWG- 222 Query: 181 FDEAVEENVVESHISKLRKKL 201 +D + VV+SHI KLRK L Sbjct: 223 YDYFGSDRVVDSHIKKLRKAL 243 >gi|255657222|ref|ZP_05402631.1| two-component response regulator [Clostridium difficile QCD-23m63] Length = 203 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/205 (23%), Positives = 93/205 (45%), Gaps = 23/205 (11%) Query: 15 YIALFGDDGVSLEGFNSLEFEE-----WLQSSAREDVSAIEAFLIGKGEKVLELPRI--- 66 Y L DD V + N + F + +A++ + +E+ ++ + LP I Sbjct: 2 YNLLVVDDDVDILNINQIYFSNIGFNVYTSETAKDAMDIVESIVLDCIILDISLPDIDGY 61 Query: 67 -----IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 I+ +P+I +S+Y + + F +G DD + KP +E+ R IY R++ Sbjct: 62 KMCNDIKEKVNIPIIFLSNYEHEEEKVRGFLAGGDDYITKPYSLKELELR---IYARMRQ 118 Query: 122 SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N + FS + R GE L E IL +L N+ + +K +I++ Sbjct: 119 YKNITSVPNVLKFSALVINVNSRKVTFDGESIDLTTMEFEILLFLAENKEQVFSKIEIYN 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKK 200 ++ + D +++ V+ HI++++KK Sbjct: 179 QVWKMPDIG-DQHTVQVHIAQMKKK 202 >gi|189463287|ref|ZP_03012072.1| hypothetical protein BACCOP_04004 [Bacteroides coprocola DSM 17136] gi|189430017|gb|EDU99001.1| hypothetical protein BACCOP_04004 [Bacteroides coprocola DSM 17136] Length = 246 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 80/149 (53%), Gaps = 12/149 (8%) Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++ R+++A+ +++P+I I+ + T+ F+ G DD ++KP RE++ RV A+ RR Sbjct: 81 KMARMLKANKDTAEIPIIFITAKDTENDTITGFNLGADDYISKPFSLREVIMRVKAVLRR 140 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +K G + + + + GE L ++E IL L+ N+G+ ++ I Sbjct: 141 TAGVQIKEEEQLQYKGLV-INIPQKKVTIDGEETSLTKKEFEILLLLLQNQGRVFSREDI 199 Query: 174 FSAIYGLFDEA-VEENVVESHISKLRKKL 201 + ++ DE V + ++ +I++LRKK+ Sbjct: 200 LAKVWN--DEVYVLDRTIDVNITRLRKKI 226 >gi|241206329|ref|YP_002977425.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860219|gb|ACS57886.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 225 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 17/169 (10%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L++ R +RA +Q ++ ++ + + + D G DD + KP E ARV + RR Sbjct: 60 LDVLRAMRARQNQAAVLILTARGTPEERVKGLDLGADDYLIKPFDIAEFEARVRVLLRRQ 119 Query: 119 LKVSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + G I R FS G P +P RE +LE L GK VAK Sbjct: 120 AGLRSATVSFGGISFDLNSRTFSAGATP------LDIPARELGLLEILFMRAGKVVAKEA 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I ++ FD+ + N +E ++S+LRK+L + G V + R +GY +D Sbjct: 174 IIQSLTA-FDDDISANAIEQYVSRLRKRL-SPHGL-TVKTARGIGYYLD 219 >gi|161614708|ref|YP_001588673.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552644|ref|ZP_02346396.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168233471|ref|ZP_02658529.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237152|ref|ZP_02662210.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168467538|ref|ZP_02701375.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821792|ref|ZP_02833792.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469497|ref|ZP_03075481.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734514|ref|YP_002114094.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250090|ref|YP_002145965.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200390714|ref|ZP_03217325.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|238911082|ref|ZP_04654919.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161364072|gb|ABX67840.1| hypothetical protein SPAB_02459 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194455861|gb|EDX44700.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710016|gb|ACF89237.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630054|gb|EDX48706.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213793|gb|ACH51190.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197289769|gb|EDY29130.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199603159|gb|EDZ01705.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205322771|gb|EDZ10610.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205332481|gb|EDZ19245.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341764|gb|EDZ28528.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 226 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 14/214 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + L + GY+ + DG + L + +E S I ++ G ++ R + Sbjct: 18 QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 66 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ R Sbjct: 67 RTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 126 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 + + + + G+ L R+E +L L + G+ V +T I S ++G+ FD E Sbjct: 127 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 184 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N V+ I +LR K+ + + + R +GY + Sbjct: 185 TNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218 >gi|153814418|ref|ZP_01967086.1| hypothetical protein RUMTOR_00628 [Ruminococcus torques ATCC 27756] gi|317500137|ref|ZP_07958370.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium 8_1_57FAA] gi|331087636|ref|ZP_08336564.1| hypothetical protein HMPREF1025_00147 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848814|gb|EDK25732.1| hypothetical protein RUMTOR_00628 [Ruminococcus torques ATCC 27756] gi|316898426|gb|EFV20464.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium 8_1_57FAA] gi|330399815|gb|EGG79475.1| hypothetical protein HMPREF1025_00147 [Lachnospiraceae bacterium 3_1_46FAA] Length = 235 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 6/134 (4%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 S VP+I +S +L + G DD + KP E++AR+ A RR S + Sbjct: 74 SDVPVIILSAKIALADKVSLLKMGADDYITKPFEPEEVIARIQAALRRTATS-KKLSCLN 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY--GLFDEAVEEN 188 + ++ D R V G L E +L + N K ++ ++ ++ G + E N Sbjct: 133 LELYPDSRKVTVHGIELSLTAHEYDLLYLFIKNPEKVYSREMLYDLVWHGGYYG---ENN 189 Query: 189 VVESHISKLRKKLR 202 V H+S LRKK++ Sbjct: 190 TVNVHVSNLRKKIK 203 >gi|74231708|gb|ABA00873.1| NsuR [Streptococcus uberis] Length = 232 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 81/170 (47%), Gaps = 11/170 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + IR P+I +S S + + G DD + KP +++A+VAA +R + Sbjct: 61 LQICKQIRESVSSPIIFVSAKDSEDDIVSGLNLGGDDYITKPFSVNQLVAKVAAHLKREE 120 Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N E PI + + + GEV L RE IL+ L + + K + +I Sbjct: 121 RHRNSKSNENVVRELLPITFYLQEKIVCINGEVISLTCREYDILDLLASKKNKVYTREEI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + +Y +A+ ++ E ++ ++R K + G +P+ + R +GY WN Sbjct: 181 YKRVYDEESDALFRSISE-YVYQIRVKF-SPYGINPIKTIRGIGYK--WN 226 >gi|50119831|ref|YP_048998.1| two-component system response regulator [Pectobacterium atrosepticum SCRI1043] gi|49610357|emb|CAG73801.1| two-component system response regulator [Pectobacterium atrosepticum SCRI1043] Length = 226 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 11/204 (5%) Query: 27 EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF++ L +E + + D +A+ ++ +++ R IR Q+P+I ++ Sbjct: 23 EGFSTSRVLTGKEGVNGAISGDYTAMILDVMLPDMSGIDVLRQIRKTQQLPIIMLTARGD 82 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETGPIRVFSDG 137 + + G DD + KP + RE++AR+ A+ RR K + A +G + + Sbjct: 83 NIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYDDQPSTKRDESVAASGDLVLNPAT 142 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 R E +G+ F L E +LE L+ + + V+K ++ G EA + + V+ HIS + Sbjct: 143 RISEWRGKPFDLTASEFNLLELLLRSPERVVSKDELSEKCLGRRREAYDRS-VDVHISNI 201 Query: 198 RKKLRNKLG-FDPVDSKRFLGYSI 220 R+KL G +++ R +GY I Sbjct: 202 RQKLGALAGNMMTIETVRSVGYRI 225 >gi|326390090|ref|ZP_08211652.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325993955|gb|EGD52385.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 80/150 (53%), Gaps = 12/150 (8%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 EL + IRA P+I ++ + + G DD + KP + RE++ARV A+ RR+ Sbjct: 60 FELLKKIRAMKVNTPVIILTAKSQDVDKILGLELGADDYITKPFNPRELVARVRAVIRRV 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQG-------EVFPLPRRERRILEYLMANRGKRVAKTQ 172 N +++ + + + + +Q EVF P RE +IL+ LM NR K V + + Sbjct: 120 YEFNASSKSINLLEYDEIKLDLIQNKAFVRGKEVFLTP-REFQILKMLMTNRKKVVKREE 178 Query: 173 IFSAIYGLFDEAVEEN-VVESHISKLRKKL 201 + ++I+G D +E+ ++ HI +LR+K+ Sbjct: 179 LIASIWG--DSFIEDTKTLDVHIRRLREKI 206 >gi|323171415|gb|EFZ57062.1| transcriptional regulatory protein creB [Escherichia coli LT-68] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ V + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVF---ERGVPVLDKARQLVPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ ++ Sbjct: 125 FSSPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|239929738|ref|ZP_04686691.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438063|ref|ZP_06577453.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340958|gb|EFE67914.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 232 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 30/225 (13%) Query: 9 ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 AL +DG+ DG+S LE F S R D++ ++ + G + L R I Sbjct: 23 ALERDGFAVTAMPDGLSGLEAFRS----------DRPDIALLDVMV--PGLDGVSLCRRI 70 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRA 126 R S VP+I +S + ++G DD V KP ++AR+ A+ RR +N R Sbjct: 71 RDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGRANGGRD 130 Query: 127 ET-----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E+ G + + + G + GE L E R+L + G +++ ++ Sbjct: 131 ESAAAAGAGVLAFGELEIDTGGMEVRRAGEPVALTPTEMRLLLEFSSAPGTVLSRDKLLE 190 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + + VV+ H+ ++LR K+G D +++ R GY + Sbjct: 191 RVWE-YGWGGDTRVVDVHV----QRLRTKIGQDRIETVRGFGYKL 230 >gi|225027068|ref|ZP_03716260.1| hypothetical protein EUBHAL_01324 [Eubacterium hallii DSM 3353] gi|224955532|gb|EEG36741.1| hypothetical protein EUBHAL_01324 [Eubacterium hallii DSM 3353] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LE R +R + +I ++ + +++G DD + KP +L ++ A +RR Sbjct: 61 LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + +G I + ++ L + E ++L + + N + ++KTQI ++ Sbjct: 121 EKTEAGKMISGDIIFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVF 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 L + V+EN + +I +LR+K+ + PV K G WN Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224 >gi|254438411|ref|ZP_05051905.1| phosphate regulon transcriptional regulatory protein PhoB [Octadecabacter antarcticus 307] gi|198253857|gb|EDY78171.1| phosphate regulon transcriptional regulatory protein PhoB [Octadecabacter antarcticus 307] Length = 227 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 14/169 (8%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R +++ S +P+I +S + ++G DD V KP E++ARV R Sbjct: 63 IEVCRQLKSRSNTRAIPIIMLSARSEELDKVRGLETGADDYVVKPYAVAELMARVRTQLR 122 Query: 118 RLKVSNNRAETGPIRVFSD-GRDPEVQ----GEV-FPLPRRERRILEYLMANRGKRVAKT 171 R++ S + G + F D D + G+V L E R+L M G+ +++ Sbjct: 123 RVRPS----KVGQVLTFDDIALDADTHRVTRGDVELKLGPTEFRLLATFMEKAGRVLSRE 178 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Q+ ++G D V+ V+ H+ +LRK L G DPV + R GY++ Sbjct: 179 QLLDQVWG-RDVYVDTRTVDVHVGRLRKVLTQHGGDDPVRTVRGAGYAL 226 >gi|168484408|ref|ZP_02709360.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|172042368|gb|EDT50414.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|332198688|gb|EGJ12770.1| response regulator [Streptococcus pneumoniae GA47368] Length = 235 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 11/120 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKV------SNNRAET----GPIRVFSDGRDPEVQ 143 G DD + KP RE+LARV A+ RR K S+N A+ G ++V+ + + Sbjct: 96 GADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNIADDSWLFGTLKVYPERHEVYKA 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ L +E +L YLM + + + ++ I+G +D E +V+ HI KLR+K+ + Sbjct: 156 NKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKIED 214 >gi|116491734|ref|YP_811278.1| DNA-binding response regulator [Oenococcus oeni PSU-1] gi|116092459|gb|ABJ57613.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Oenococcus oeni PSU-1] Length = 224 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 81/160 (50%), Gaps = 4/160 (2%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E + +R + +P++ ++ ++T F G+DD + KPI E+ R++A+ RR Sbjct: 61 VEFAKTVRQLNENIPILFVTARDDIKTKKAGFRVGIDDYLVKPIDLDELKLRISAVLRRA 120 Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +S N + E G + + S+ + G PL RE IL +++ G+ ++ ++ + Sbjct: 121 NISQNQKIEIGNLLLKSEEISASINGVPIPLTVREFNILFKMLSFAGRAFSRAELLDDFW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 A V+ +I+KLR+K ++ F+ + + LGY Sbjct: 181 DTESNA-SLRAVDVYITKLREKFKSTNAFE-IKTIHGLGY 218 >gi|163942188|ref|YP_001647072.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229013655|ref|ZP_04170784.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229135265|ref|ZP_04264061.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|163864385|gb|ABY45444.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228648190|gb|EEL04229.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228747577|gb|EEL97451.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 235 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++ + +F E +G+ L + E +LE LM + V + ++ A Sbjct: 125 LAAESDCLGVNGLLLFPSQHTVEWKGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225 >gi|307243929|ref|ZP_07526054.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492751|gb|EFM64779.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 227 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/203 (22%), Positives = 94/203 (46%), Gaps = 18/203 (8%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP--------RIIRAHSQVPLIGISD 80 L+ + +L +A V I+ F K + ++ ++P ++IR S +P+I ++ Sbjct: 23 LQAKNYLVDTATNGVECIKKFKESKYDMIILDIKMPNLDGHTTCKMIRNTSNIPIIFLTA 82 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--PIRVFSDGR 138 + F+ G DD + KP +L R+ A+ RR N I + + Sbjct: 83 LSDESDQIKGFELGCDDYITKPFSFNLLLKRLEAVLRRSHNENKNTSLNFEDISLDLNTY 142 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 +V+ V L +E IL+ L+ + + + + +I+G +D + +V++HI +R Sbjct: 143 TLKVKDAVVELTLKEFNILKELIEKYPQVITRETLLDSIWG-YDYYGDSRIVDAHIKNIR 201 Query: 199 KKLRNKLGFDPVDSKRFLGYSID 221 K K+G + + + +GY+++ Sbjct: 202 K----KIGLPYIKTVKGIGYTLE 220 >gi|237728197|ref|ZP_04558678.1| two-component system response regulator [Citrobacter sp. 30_2] gi|226910208|gb|EEH96126.1| two-component system response regulator [Citrobacter sp. 30_2] Length = 222 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 21/227 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G ++ E + + ++ L + + + Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQCLETGHYSLVVLDLGLPDE-DGLH 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 L RI + +P++ ++ +L+ + D G DD + KP E+ AR+ A+ RR Sbjct: 62 FLTRIRQKKYSLPVLILTARDTLKDRVSGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 L VSN G +V+ DG+ EV P +E +L LM G V + + Sbjct: 122 QGESELIVSNLTLNIGRRQVWMDGQ------EVILTP-KEYALLSRLMLKAGSPVHREIL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ IY +D N +E HI LR+K+G + + R GY + Sbjct: 175 YNDIYS-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216 >gi|52140301|ref|YP_086529.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228930266|ref|ZP_04093274.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|51973770|gb|AAU15320.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228829407|gb|EEM75036.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 223 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R + +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 222 >gi|15901898|ref|NP_346502.1| response regulator [Streptococcus pneumoniae TIGR4] gi|15903934|ref|NP_359484.1| response regulator [Streptococcus pneumoniae R6] gi|111657578|ref|ZP_01408316.1| hypothetical protein SpneT_02001237 [Streptococcus pneumoniae TIGR4] gi|116516111|ref|YP_817297.1| response regulator [Streptococcus pneumoniae D39] gi|148989900|ref|ZP_01821183.1| response regulator [Streptococcus pneumoniae SP6-BS73] gi|148992075|ref|ZP_01821849.1| response regulator [Streptococcus pneumoniae SP9-BS68] gi|148998124|ref|ZP_01825637.1| response regulator [Streptococcus pneumoniae SP11-BS70] gi|149006952|ref|ZP_01830633.1| response regulator [Streptococcus pneumoniae SP18-BS74] gi|149023777|ref|ZP_01836238.1| response regulator [Streptococcus pneumoniae SP23-BS72] gi|168486897|ref|ZP_02711405.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|168489143|ref|ZP_02713342.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|168491607|ref|ZP_02715750.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|168494164|ref|ZP_02718307.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|168577113|ref|ZP_02722933.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|194397101|ref|YP_002038671.1| response regulator PnpR [Streptococcus pneumoniae G54] gi|221232792|ref|YP_002511946.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae ATCC 700669] gi|225855570|ref|YP_002737082.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225859838|ref|YP_002741348.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225861900|ref|YP_002743409.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|237650562|ref|ZP_04524814.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974] gi|237821702|ref|ZP_04597547.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974M2] gi|298229982|ref|ZP_06963663.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254056|ref|ZP_06977642.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501581|ref|YP_003723521.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303259583|ref|ZP_07345559.1| response regulator [Streptococcus pneumoniae SP-BS293] gi|303262028|ref|ZP_07347973.1| response regulator [Streptococcus pneumoniae SP14-BS292] gi|303264484|ref|ZP_07350403.1| response regulator [Streptococcus pneumoniae BS397] gi|303266795|ref|ZP_07352676.1| response regulator [Streptococcus pneumoniae BS457] gi|303268985|ref|ZP_07354768.1| response regulator [Streptococcus pneumoniae BS458] gi|307128343|ref|YP_003880374.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|5830529|emb|CAB54572.1| response regulator [Streptococcus pneumoniae] gi|14973592|gb|AAK76142.1| response regulator [Streptococcus pneumoniae TIGR4] gi|15459586|gb|AAL00695.1| Response regulator [Streptococcus pneumoniae R6] gi|116076687|gb|ABJ54407.1| response regulator [Streptococcus pneumoniae D39] gi|147756134|gb|EDK63177.1| response regulator [Streptococcus pneumoniae SP11-BS70] gi|147761553|gb|EDK68518.1| response regulator [Streptococcus pneumoniae SP18-BS74] gi|147924685|gb|EDK75770.1| response regulator [Streptococcus pneumoniae SP6-BS73] gi|147929124|gb|EDK80135.1| response regulator [Streptococcus pneumoniae SP9-BS68] gi|147929573|gb|EDK80566.1| response regulator [Streptococcus pneumoniae SP23-BS72] gi|183570147|gb|EDT90675.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|183572272|gb|EDT92800.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|183574008|gb|EDT94536.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|183575934|gb|EDT96462.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|183577273|gb|EDT97801.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|194356768|gb|ACF55216.1| PnpR response regulator TCS04 [Streptococcus pneumoniae G54] gi|220675254|emb|CAR69846.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae ATCC 700669] gi|225722012|gb|ACO17866.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225723632|gb|ACO19485.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225728009|gb|ACO23860.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|298237176|gb|ADI68307.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301795011|emb|CBW37475.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae INV104] gi|301802754|emb|CBW35527.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae INV200] gi|302636668|gb|EFL67158.1| response regulator [Streptococcus pneumoniae SP14-BS292] gi|302639135|gb|EFL69594.1| response regulator [Streptococcus pneumoniae SP-BS293] gi|302641452|gb|EFL71816.1| response regulator [Streptococcus pneumoniae BS458] gi|302643703|gb|EFL73969.1| response regulator [Streptococcus pneumoniae BS457] gi|302645854|gb|EFL76082.1| response regulator [Streptococcus pneumoniae BS397] gi|306485405|gb|ADM92274.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|327388818|gb|EGE87166.1| response regulator [Streptococcus pneumoniae GA04375] gi|332071153|gb|EGI81648.1| response regulator [Streptococcus pneumoniae GA17545] gi|332071349|gb|EGI81843.1| response regulator [Streptococcus pneumoniae GA41301] gi|332071516|gb|EGI82009.1| response regulator [Streptococcus pneumoniae GA17570] gi|332198503|gb|EGJ12586.1| response regulator [Streptococcus pneumoniae GA41317] gi|332198895|gb|EGJ12976.1| response regulator [Streptococcus pneumoniae GA47901] Length = 235 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 11/120 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKV------SNNRAET----GPIRVFSDGRDPEVQ 143 G DD + KP RE+LARV A+ RR K S+N A+ G ++V+ + + Sbjct: 96 GADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNIADDSWLFGTLKVYPERHEVYKA 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ L +E +L YLM + + + ++ I+G +D E +V+ HI KLR+K+ + Sbjct: 156 NKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKIED 214 >gi|320449570|ref|YP_004201666.1| two-component response regulator [Thermus scotoductus SA-01] gi|320149739|gb|ADW21117.1| two-component response regulator [Thermus scotoductus SA-01] Length = 227 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 2/159 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA P++ ++ +++ + G DD + KP H E+LAR+ + R K Sbjct: 62 EVARRIRATDDTPILVLTAQDAVERKVGLLSDGADDYLVKPFHPAELLARI-QVQLRHKE 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + ++ R L +E +L LM+ G+ + +I I+G Sbjct: 121 GSEVLSVGKLELYPKRRQVFFGETEVRLSPKEFDLLHLLMSRPGRVFPREEIEEKIWG-K 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ H++ LR KLR + + + R LGY++ Sbjct: 180 PLGRDSNVLDVHVANLRAKLREAGAYGYLRTVRGLGYAV 218 >gi|318042450|ref|ZP_07974406.1| OmpR subfamily protein [Synechococcus sp. CB0101] Length = 240 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS---AREDVSAIEAFLIGKGE 58 +L++D + + +AL G ++ + W S AR D++ ++ L Sbjct: 5 ILLVEDEPDLAEALVALLEQQGHVVDHCSD-GLSAWTLLSGDLARYDLALVDWML--PQL 61 Query: 59 KVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +RA VP++ ++ ++ D+G DD ++KP E+LARV A+ R Sbjct: 62 SGVELCRRLRAAGFTVPVLLLTARDGTADRVEGLDAGADDYLSKPFAMEELLARVRALQR 121 Query: 118 RLK-VSNNRAETGPIRVFSDGRDPEVQGEV----FPLPRRERRILEYLMANRGKRVAKTQ 172 R + + G R+ + VQ PL +E ++L Y M + G ++ ++ Sbjct: 122 RHPGYREPQLQVGSYRLDPSRSELTVQAATGAVRVPLSAKELQLLTYFMEHSGDILSGSR 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + ++ L + V NVV + + LR+KL + P+ + GY D Sbjct: 182 LRNQLWDLHQDPV-SNVVAAQVRLLRRKLADHGLPSPITTVPSRGYRFD 229 >gi|315283631|ref|ZP_07871771.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria marthii FSL S4-120] gi|313612736|gb|EFR86738.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria marthii FSL S4-120] Length = 236 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 18/122 (14%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--------------TGPIRVFSDGRD 139 G DD + KP RE++AR+ AI RR + +AE G +++ D + Sbjct: 95 GADDYMTKPFSPREVVARIKAILRR---TEGKAEIIEELTEDVEATILIGDLKILPDSYE 151 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 +Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR Sbjct: 152 VYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRD 210 Query: 200 KL 201 K+ Sbjct: 211 KI 212 >gi|269797012|ref|YP_003316467.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269099197|gb|ACZ23633.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 225 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 97/203 (47%), Gaps = 17/203 (8%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYP 82 V+ G + L W+ R D ++ + G G V E R+ A P++ ++ Sbjct: 29 VAANGVDGL----WMAQEHRYDAIVLDIMMPGMNGYTVCE--RLRAAEDWTPILMLTAKD 82 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGPIRVFSDGRD 139 ++ D+G DD ++KP + ++AR+ ++ RR S R E G +++ R Sbjct: 83 GEWDQVEALDTGADDFLSKPFSYAVLVARLRSLVRR--GSRERPVVLEAGDLQLDPAARR 140 Query: 140 PEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GLFDEAVEENVVESHISKL 197 +G+V L RE +LE+L+ N G V+K Q+ ++ G F+ + N+VE ++ L Sbjct: 141 VR-RGDVEIELTSREFAVLEFLIRNAGDVVSKRQVLDNVWDGDFEG--DPNIVEVYVRHL 197 Query: 198 RKKLRNKLGFDPVDSKRFLGYSI 220 R K+ G +++ R GY + Sbjct: 198 RNKVDRPFGRASIETLRGAGYRL 220 >gi|238762840|ref|ZP_04623808.1| KDP operon transcriptional regulatory protein kdpE [Yersinia kristensenii ATCC 33638] gi|238698851|gb|EEP91600.1| KDP operon transcriptional regulatory protein kdpE [Yersinia kristensenii ATCC 33638] Length = 173 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 20/159 (12%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S +P+I +S S + + D+G DD ++KP E+LARV RR + + Sbjct: 15 LRQWSAIPIIVLSARSSEEDKVAALDAGADDYLSKPFGISELLARVRVALRR---HSGGS 71 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + P+ FSD R G L E R+L L+AN GK + + Q+ + ++G Sbjct: 72 QESPLVNFSDISVDLINRQVTRAGIDLHLTPIEFRLLSALLANTGKVITQRQLLNQVWG- 130 Query: 181 FDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216 N VE H LR LR KL DP K L Sbjct: 131 ------PNYVE-HSHYLRIYMGHLRQKLETDPTRPKHLL 162 >gi|229826987|ref|ZP_04453056.1| hypothetical protein GCWU000182_02371 [Abiotrophia defectiva ATCC 49176] gi|229788605|gb|EEP24719.1| hypothetical protein GCWU000182_02371 [Abiotrophia defectiva ATCC 49176] Length = 225 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 6/161 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLKV 121 L + + P++ ++ S++ + DSG +D + KP E+LAR+ + R + + Sbjct: 63 LKELRKLKKNTPVLFLTARDSIEDRVKGLDSGANDYLVKPFSFEELLARIRVMTREKHNL 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S N + + G+ L +E ++LEYLM N+ K +++ +I + I+ + Sbjct: 123 SENILTIADLCLNLSSHTVTRDGKEISLTSKEYQLLEYLMYNKEKVLSREKIENHIWN-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 D NV++ +I LRKK+ + GFD + + R GY I Sbjct: 182 DYEGGTNVIDVYIRYLRKKIDD--GFDTKLIHTVRGAGYVI 220 >gi|237737806|ref|ZP_04568287.1| two-component response regulator [Fusobacterium mortiferum ATCC 9817] gi|229419686|gb|EEO34733.1| two-component response regulator [Fusobacterium mortiferum ATCC 9817] Length = 234 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 73/145 (50%), Gaps = 3/145 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ +IIR S++P+I ++ ++ D G DD + KP E+ AR+ R K Sbjct: 65 EVCKIIRKTSEIPIIILTAKDQTLNKIELLDMGADDYITKPFEIEELFARMRVALRNKKE 124 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++N +++ D + E L ++E I+ + N+ +++ +I I+G Sbjct: 125 FKTHNTITYENLKLEIDSKILFKGEEKIFLTKKEYNIMYLFLLNKEIVISREKIIEEIWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNK 204 +D ++ +V+ +I+ LRKK+ NK Sbjct: 185 -YDFEGKDKIVDVYINLLRKKIENK 208 >gi|188996277|ref|YP_001930528.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] gi|188931344|gb|ACD65974.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] Length = 231 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 79/150 (52%), Gaps = 9/150 (6%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE +++R+ + +PLI ++ + + + G DD V KP RE+LARV A+ R Sbjct: 61 LEFCKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLR 120 Query: 118 RLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R K + + G +++ + + ++G+ L + ++L L+ ++GK +++ Sbjct: 121 RSKSLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDY 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR 202 I ++ +D+ V + ++ HI KLR+ L+ Sbjct: 181 IIEHVWA-WDKDVYDRTIDVHIKKLRELLK 209 >gi|169833990|ref|YP_001695445.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pneumoniae Hungary19A-6] gi|168996492|gb|ACA37104.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Hungary19A-6] Length = 235 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 11/120 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLK----------VSNNRAETGPIRVFSDGRDPEVQ 143 G DD + KP RE+LARV A+ RR K ++++ G ++V+ + + Sbjct: 96 GADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNIADDSWLFGTLKVYPERHEVYKA 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ L +E +L YLM + + + ++ I+G +D E +V+ HI KLR+K+ + Sbjct: 156 NKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKIED 214 >gi|74314598|ref|YP_313017.1| DNA-binding transcriptional regulator BasR [Shigella sonnei Ss046] gi|73858075|gb|AAZ90782.1| transcriptional regulatory protein [Shigella sonnei Ss046] gi|323164603|gb|EFZ50403.1| transcriptional regulatory protein basR/pmrA [Shigella sonnei 53G] Length = 222 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 15/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G + E QS S + L E L Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYTCDGVTTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60 Query: 62 E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L RI + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 NN+ E+ G + + R + GE L +E +L LM G V + +++ Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 IY +D N +E HI LR+K+G + + R GY + N Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219 >gi|121605861|ref|YP_983190.1| two component transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120594830|gb|ABM38269.1| two component transcriptional regulator, winged helix family [Polaromonas naphthalenivorans CJ2] Length = 230 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 9/168 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E R IRA SQ+P+I ++ + + G DD V KP E++AR+ AI RR++ Sbjct: 61 MEALRRIRAGSQIPVIMLTARGDNIDRIVGLEMGADDYVPKPCTPGELVARLRAIMRRVR 120 Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N + G + ++ R G L E +LE L+ G+ V+K + Sbjct: 121 PFVDDSQPAANHLKAGGLELWPGRRQAAWHGAPLELTGTEFSLLEVLVRQAGRLVSKQDL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 ++G A E ++ HIS +R+KL + P + R +GY + Sbjct: 181 SKHVFG-RPLAPFERRIDVHISSIRQKLGQRPDGQPWILGVRGMGYQL 227 >gi|332976206|gb|EGK13070.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 227 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 5/158 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R +++P+I +S + + + G DD + KP E++ARV ++ RR Sbjct: 69 REQNRIPVILLSARADTRDRVAGLEGGADDYITKPFEPAELVARVKSLLRRAGSGPGMGG 128 Query: 128 TGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 P IR+ GR + L R E +L L + G+ ++ ++ I+G +D Sbjct: 129 AEPMPGIRIDHTGRTAFAGEKELRLTRTEFDLLATLAGSPGRAWSREELVERIWG-WDFP 187 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 E V++H+ LR+KL+ G P GY W Sbjct: 188 GEVRTVDTHVKNLREKLKQA-GASPDLIDTVWGYGYKW 224 >gi|329938744|ref|ZP_08288140.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329302235|gb|EGG46127.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 249 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/207 (24%), Positives = 96/207 (46%), Gaps = 20/207 (9%) Query: 31 SLEFEEWLQSSAREDVSAIEA------------FLIGKGEKVLELPRIIRAHSQVPLIGI 78 +L +E W SA + A+ A ++ + + L R+ R VP++ + Sbjct: 41 ALRYEGWRIRSAGDGQGAVRAAREFRPDAVVLDLMLPDMDGLSALGRLRRELPDVPVLFL 100 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVF 134 + + + + +G DD V KP +++AR+ + RR ++ R++ G + + Sbjct: 101 TAKDAAEDRIAGLTAGGDDYVTKPFGVEDVVARLRGLIRRSGAADRRSDAVLVVGDLILD 160 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D + G L E +L +LM N + ++K QI ++ +D + NVVE +I Sbjct: 161 EDSHEVSRGGTDIHLTATEFELLRFLMRNPRRVLSKAQILDRVWS-YDFGGQANVVELYI 219 Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGYSI 220 S LR+K+ G +P + ++R GY I Sbjct: 220 SYLRRKI--DAGREPMIHTRRGAGYLI 244 >gi|313885741|ref|ZP_07819490.1| response regulator receiver domain protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619106|gb|EFR30546.1| response regulator receiver domain protein [Eremococcus coleocola ACS-139-V-Col8] Length = 224 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 16/165 (9%) Query: 45 DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D+ ++ L GK G +VL IR S +P+I ++ +T + +G DD ++KP Sbjct: 46 DLVLLDIMLPGKDGGQVLAE---IRQSSNIPVIMLTAISDKKTVTQYLLNGADDYISKPF 102 Query: 104 HHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE------VQGEVFPLPRRERRIL 157 E+LAR+ R N +A F D E G+ L +E IL Sbjct: 103 DEAEVLARIQVCLR-----NRQAPVQSQLSFCDLELDEETYQLLCCGQAVQLRLKEYDIL 157 Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + L + + K Q++++I+G D +N + +H+S +RKK++ Sbjct: 158 KLLFNHPQQVFTKEQLYASIWGQ-DYLPGDNTLNTHLSNIRKKIK 201 >gi|319764135|ref|YP_004128072.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330823590|ref|YP_004386893.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|317118696|gb|ADV01185.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329308962|gb|AEB83377.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 221 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 2/148 (1%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIR 132 P++ +S L + D+G DD + KP E+LAR+ A+ RR + G + Sbjct: 74 PVLVLSAREQLDDRVRALDAGADDYLTKPFELAELLARLRALVRRPAQRDTPVLRHGELA 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 V R +G+ L +E LE L+ +G +++TQIF +Y +A + VVE Sbjct: 134 VDPRSRTARWRGDDLKLTPKEYGCLELLLRRQGAVLSRTQIFEHLYDSSSDA-SDKVVEV 192 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +S LR KL + + ++R GY + Sbjct: 193 IVSTLRTKLAQCGLGELIVTRRGFGYVL 220 >gi|260221284|emb|CBA29695.1| Transcriptional regulatory protein tctD [Curvibacter putative symbiont of Hydra magnipapillata] Length = 226 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 90/168 (53%), Gaps = 7/168 (4%) Query: 57 GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ ++ R IR+ +++P++ ++ SL ++ + G DD + KP E+ AR+ A+ Sbjct: 56 GKSGTDILRSIRSRDNRLPVLVLTARDSLTERVNTLNQGADDFLPKPFALAELEARLTAL 115 Query: 116 YRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + S + R GP+ + R + G + L RE +L+ L+ G+ +++ Q+ Sbjct: 116 VRRARGSEHPRFAAGPLNFDTVTRQFTLHGAMLALSPREHALLKALIMRSGEPLSRQQVM 175 Query: 175 SAIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+ DE+ V+ + ++ + +LRK+L + G + + R LGY ++ Sbjct: 176 DRIFS--DESDVQPSAIDMLLHRLRKRLEHS-GVH-IHTYRGLGYVLE 219 >gi|255017072|ref|ZP_05289198.1| hypothetical protein LmonF_03388 [Listeria monocytogenes FSL F2-515] Length = 220 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 91/189 (48%), Gaps = 16/189 (8%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 + +G +LE E +Q D+ ++ L G+ +E+ R +R +P+I ++ S Sbjct: 32 CAYDGDEALELVEEVQP----DLILLDIMLPGRDG--IEVCREVRKKYDMPIIMVTAKDS 85 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET--------GPIRVF 134 + + G DD V KP +RE++ARV A RR +VS++ AE G + + Sbjct: 86 EIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQVSSSTAEEEENSELEIGSLIIH 145 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D +GE L RE +L YL + G+ + + + ++G +D + V+ + Sbjct: 146 PDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREHLLQTVWG-YDYFGDVRTVDVTV 204 Query: 195 SKLRKKLRN 203 +LR+K+ + Sbjct: 205 RRLREKIED 213 >gi|254831076|ref|ZP_05235731.1| two-component response phosphate regulator [Listeria monocytogenes 10403S] gi|255025953|ref|ZP_05297939.1| two-component response phosphate regulator [Listeria monocytogenes FSL J2-003] gi|284802939|ref|YP_003414804.1| two-component response phosphate regulator [Listeria monocytogenes 08-5578] gi|284996080|ref|YP_003417848.1| two-component response phosphate regulator [Listeria monocytogenes 08-5923] gi|284058501|gb|ADB69442.1| two-component response phosphate regulator [Listeria monocytogenes 08-5578] gi|284061547|gb|ADB72486.1| two-component response phosphate regulator [Listeria monocytogenes 08-5923] Length = 236 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 18/122 (14%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--------------TGPIRVFSDGRD 139 G DD + KP RE++AR+ AI RR + +AE G +++ D + Sbjct: 95 GADDYMTKPFSPREVVARIKAILRR---TEGKAEIIEELTEDVEAAILIGDLKILPDSYE 151 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 +Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR Sbjct: 152 VYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRD 210 Query: 200 KL 201 K+ Sbjct: 211 KI 212 >gi|255656976|ref|ZP_05402385.1| two-component system response regulator [Clostridium difficile QCD-23m63] Length = 226 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 85/163 (52%), Gaps = 14/163 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA S VPLI +S S + ++G DD + KP ++ ++ I RR+ N + Sbjct: 67 IRAISNVPLIFLSSRDSDMDLIMGINNGADDYITKPFSIDILVTKINGIIRRVY---NYS 123 Query: 127 ETGPI-----RVFSDGR---DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ I +F G+ + + + L + E +IL L+ N+ + V++ + ++ Sbjct: 124 DSNSILYCEDLMFDVGKGIIKHKYKDKSIELTKNEIKILTLLLKNKNRVVSRESLMMTLW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 DE V +N + ++++LR K++ +LGFD + +K+ +GY I Sbjct: 184 D-NDEFVTDNALTVNMNRLRSKVK-ELGFDDFIKTKKGIGYII 224 >gi|224026196|ref|ZP_03644562.1| hypothetical protein BACCOPRO_02952 [Bacteroides coprophilus DSM 18228] gi|224019432|gb|EEF77430.1| hypothetical protein BACCOPRO_02952 [Bacteroides coprophilus DSM 18228] Length = 228 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 77/152 (50%), Gaps = 7/152 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G K+ + + + + +P+I I+ + T+ F+ G DD ++KP RE++ RV A+ Sbjct: 61 GFKMASMMKKNKDTAGIPIIFITAKDTENDTITGFNLGADDYISKPFSLREVIMRVKAVL 120 Query: 117 RRLKVSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR R + + + + + GE L ++E IL L+ N+G+ ++ Sbjct: 121 RRTANVQTREQEQLQYRDLVIDIPKKKVTISGEEISLTKKEFEILLLLLQNQGRVFSRED 180 Query: 173 IFSAIYGLFDEA-VEENVVESHISKLRKKLRN 203 I + ++ DE V + ++ +I++LRKK+ N Sbjct: 181 ILAKVW--HDEVYVLDRTIDVNITRLRKKIGN 210 >gi|158336368|ref|YP_001517542.1| two component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158306609|gb|ABW28226.1| two component transcriptional regulator, winged helix family [Acaryochloris marina MBIC11017] Length = 237 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 80/163 (49%), Gaps = 9/163 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125 +R S VP+I ++ + + + G DD + KP +E+ +R+ I RR+ S++ Sbjct: 71 LRQESDVPIIMLTALSDVADRITGLEMGADDYMVKPFSPKELESRIRCILRRITKSHSSH 130 Query: 126 ------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + + ++ R E L E +LE L++ G+ +++ + ++G Sbjct: 131 HKSAGVIQVGHLEIDTNKRQVYKDKERIQLTHLEFNLLELLVSRPGEPISRVEFLQKVWG 190 Query: 180 LF-DEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 D ++ VV+ H+S+LR KL+ D + S R +GY+I Sbjct: 191 YSPDGKIDTRVVDVHMSRLRNKLKEDTEEPDLILSVRGVGYAI 233 >gi|16804539|ref|NP_466024.1| two-component response phosphate regulator [Listeria monocytogenes EGD-e] gi|224503258|ref|ZP_03671565.1| two-component response phosphate regulator [Listeria monocytogenes FSL R2-561] gi|254900361|ref|ZP_05260285.1| two-component response phosphate regulator [Listeria monocytogenes J0161] gi|16411989|emb|CAD00579.1| two-component response phosphate regulator [Listeria monocytogenes EGD-e] Length = 236 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 18/122 (14%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--------------TGPIRVFSDGRD 139 G DD + KP RE++AR+ AI RR + +AE G +++ D + Sbjct: 95 GADDYMTKPFSPREVVARIKAILRR---TEGKAEIIEELTEDVEATILIGDLKILPDSYE 151 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 +Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR Sbjct: 152 VYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRD 210 Query: 200 KL 201 K+ Sbjct: 211 KI 212 >gi|21283366|ref|NP_646454.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MW2] gi|49486519|ref|YP_043740.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|297207594|ref|ZP_06924029.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911675|ref|ZP_07129119.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|21204806|dbj|BAB95502.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MW2] gi|49244962|emb|CAG43423.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|296887611|gb|EFH26509.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887096|gb|EFK82297.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] Length = 234 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET------GPIRVFSDGRDPEVQGEVF 147 G DD + KP RE++ARV AI RR + E G IR+ D + E+ Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRSQFVKEVEEVDDDITIGSIRIRPDYFEVYKHNELL 155 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLG 206 L +E +L YL+ +G+ + + + + ++ ++ A + +V+ HIS LR KL N Sbjct: 156 ELTPKEFELLLYLIERQGRVITREHMLNTVWN-YEFAGDSRIVDVHISHLRDKLEDNPKK 214 Query: 207 FDPVDSKRFLGYSID 221 + + R LGY ++ Sbjct: 215 PQLIKTVRGLGYKLE 229 >gi|311104981|ref|YP_003977834.1| transcriptional regulator QseB 1 [Achromobacter xylosoxidans A8] gi|310759670|gb|ADP15119.1| transcriptional regulatory protein QseB 1 [Achromobacter xylosoxidans A8] Length = 219 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 13/165 (7%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L R +RA + P++ + ++ + D+G DD V KP E+LAR+ A+ RR Sbjct: 60 LSLLRDLRARKDRTPVLIATARDAVSDRIAGLDAGADDYVVKPYDVDELLARMRALIRR- 118 Query: 120 KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S RAE I + V G L RE +LE L+A G ++ Q+ Sbjct: 119 --SAGRAEPVFEHEGITIDPQSHAAMVDGTPVTLTAREWAVLEPLIARPGMIFSRAQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y + E++ N VE +I LRK KLG + + + R +GY I Sbjct: 177 KLYS-WKESISSNAVEVYIHGLRK----KLGPNLIQNVRGVGYVI 216 >gi|302392661|ref|YP_003828481.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] gi|302204738|gb|ADL13416.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] Length = 227 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/194 (25%), Positives = 94/194 (48%), Gaps = 14/194 (7%) Query: 35 EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94 EE L++ D + ++ G +E+ R +R S++P+I ++ + D G Sbjct: 37 EEGLEAIIEGDFDLVLLDIMLPGLSGMEICRRVRKESEIPIIMLTAKDDTTDKVMGLDLG 96 Query: 95 VDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF--------SDGRDPEVQGEV 146 D + KP E+LAR+ + RR N+ + G + + R+ V EV Sbjct: 97 AHDYITKPFAIEELLARMRGVLRR-----NKRDAGMDSILRVKNLVLNQETREVRVNDEV 151 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L ++E +L YL+ N+G +++ QI ++G +D + N+V+ +I LR K+ ++ Sbjct: 152 VELTKKEYNLLLYLLKNKGIVLSREQIIEDVWG-YDYPGDTNIVDVYIRYLRSKIDDECK 210 Query: 207 FDPVDSKRFLGYSI 220 +++ R +GY I Sbjct: 211 ETYIETVRGVGYVI 224 >gi|288956869|ref|YP_003447210.1| two-component response regulator [Azospirillum sp. B510] gi|288909177|dbj|BAI70666.1| two-component response regulator [Azospirillum sp. B510] Length = 248 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 20/173 (11%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ R +R +++ +P+I ++ + +SG DD + KP E++AR+ A+ R Sbjct: 80 LEVCRQLRRNAKTRDIPIIMLTARGEEGDRVRGLNSGADDYITKPFSPTELVARMRAVLR 139 Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R L ++ + RV + RD + F R+L + M + G+ Sbjct: 140 RASPGMTDEVLTFADVTMDLAAHRVRRNSRDVHLGPTEF-------RLLRHFMQHPGRVF 192 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ ++G D VE V+ HI +LRK + + D + + R GY++D Sbjct: 193 SREQLLDLVWG-HDVYVEPRTVDVHIRRLRKAMNEEDELDLIRTVRSAGYALD 244 >gi|238917445|ref|YP_002930962.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] gi|238872805|gb|ACR72515.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 77/165 (46%), Gaps = 3/165 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LE R +R + +I ++ + +++G DD + KP +L ++ A +RR Sbjct: 61 LEFVRWMRCNYNTYIICLTALDQEMDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + +G I ++ ++ L + E ++L + + N + +++TQI ++ Sbjct: 121 EKTEAGKMISGDIVFIAEEMKVLIKSREISLTKTELKMLTFFLQNPKQILSRTQILENVF 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 L + V+EN + +I +LR+K+ + PV K G WN Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224 >gi|196039393|ref|ZP_03106698.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196045673|ref|ZP_03112903.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218906439|ref|YP_002454273.1| DNA-binding response regulator [Bacillus cereus AH820] gi|196023504|gb|EDX62181.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196029553|gb|EDX68155.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218535506|gb|ACK87904.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 223 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R + +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 120 KTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 222 >gi|124021896|ref|YP_001016203.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] gi|123962182|gb|ABM76938.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] Length = 290 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 22/173 (12%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +RA S VP+I +S ++ + D G DD + KP +E+ AR+A I RR+ + Sbjct: 89 RRLRAESCVPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRRVGPGSA 148 Query: 125 RAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 AE G + V ++ R GE L E +LE L G+ V + + Sbjct: 149 TAEIRDLPVGQGVMRVGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFREPGRVVPRAE 208 Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYS 219 I ++G A + VV+ ++++LR KL DP + + R +GYS Sbjct: 209 ILEQLWGYPPRRAADLRVVDVYVARLRGKLEP----DPRNPELILTVRGIGYS 257 >gi|83814493|ref|YP_446590.1| PhoP3 response regulator [Salinibacter ruber DSM 13855] gi|83755887|gb|ABC44000.1| PhoP3 response regulator [Salinibacter ruber DSM 13855] Length = 246 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 8/151 (5%) Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPI 131 L G+ D+ + + F G DD + KP E++AR+ + RR + + T G + Sbjct: 87 LTGLGDH---EHKMRGFQVGADDYLTKPFETEELVARIDVLLRREAEATDETGTFRVGGL 143 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 RV + D GE L E ++L YL+ RG+ + QI ++ L E VE ++ Sbjct: 144 RVDLEEDDVSRDGEPVDLTDLEYKLLAYLLRRRGRTATREQILRDVWDLPTE-VETRTID 202 Query: 192 SHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 H++ LR + + + P+ S +GY ++ Sbjct: 203 RHVNALRDVMDGEAEDEWPIQSVYGIGYKLE 233 >gi|332980781|ref|YP_004462222.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332698459|gb|AEE95400.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 225 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 6/159 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP+I IS + + G DD + KP + A+V A+ RR L+ Sbjct: 69 IRKVSKVPIIFISSADDNMNIIMAMNMGGDDFIAKPFDLNVLTAKVGALIRRAYSLQGQV 128 Query: 124 NRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N E G + D G L + + RIL+ LM N G+ +++ +I ++ D Sbjct: 129 NVIEHNGAVLNLGDAT-LVYHGNKIELTKNDYRILQLLMENAGRVISREEIMQRLWE-SD 186 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +++N + ++++LRKKL + +K+ LGY ++ Sbjct: 187 DFIDDNTLTVNMARLRKKLAEAGLEGFIKTKKGLGYMVE 225 >gi|271966272|ref|YP_003340468.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509447|gb|ACZ87725.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 233 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 11/208 (5%) Query: 22 DGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLI-G 77 + + L GF + + + L++ ARE I ++ + R +R PL+ Sbjct: 24 EALELNGFAVRTAADGRQALEAVARERPDIIVLDVMMPAPDGFTVARKLREAGDSPLLLF 83 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG 137 ++ ++ + +G DD V KP E++ R+ AI RR++ + + + G +R Sbjct: 84 LTAKDAVSDRIAGLTAGGDDYVTKPFSLEEVVLRLRAIMRRMRPAQEQVDDGVLRYADLE 143 Query: 138 RDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 D + G L E +L YLM N + V+K QI ++ +D E +VES Sbjct: 144 LDEQAHTVRRAGRAIHLSPTEFSLLRYLMINAERVVSKAQILDRVWD-YDFEGESRIVES 202 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +IS LR+K+ + G + + R +GY + Sbjct: 203 YISYLRRKI-DAEGPPLIHTLRGVGYRL 229 >gi|229094365|ref|ZP_04225439.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|228689043|gb|EEL42868.1| DNA-binding response regulator [Bacillus cereus Rock3-42] Length = 202 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R + +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 39 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 98 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 99 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 158 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 159 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 201 >gi|225867234|ref|YP_002752612.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225788675|gb|ACO28892.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 223 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R + +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 120 KAEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 222 >gi|261856400|ref|YP_003263683.1| transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261836869|gb|ACX96636.1| two component transcriptional regulator, winged helix family [Halothiobacillus neapolitanus c2] Length = 236 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 23/218 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF---LIGKGE 58 +++DD A ++ A D +G++ +E E + R + S ++ L+ GE Sbjct: 4 ILVVDDDADLRSLLRAYLTD-----QGYHVIEAAEGSELWTRLENSTVDLIILDLMLPGE 58 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L L R IRA P++ ++ + + G DD + KP H RE+LAR+ +I+RR Sbjct: 59 DGLALCRTIRARQTTPILMLTARGDEMDRIIGLEMGADDYMPKPFHPRELLARIRSIFRR 118 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGE--------VFPLPRRERRILEYLMANRGKRVAK 170 + N+A+ P + G ++ V PL E R+L+ L + +++ Sbjct: 119 SE-QQNQAQP-PRHLHFSGWTLDLAARHLMSADQVVIPLSTGEFRLLKTLAEHPNTVLSR 176 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 Q+ A+ G E + ++ I + +LR +LG D Sbjct: 177 DQLMDALAG-----READPLDRTIDVMMSRLRRRLGDD 209 >gi|110566635|emb|CAL23368.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus amyloliquefaciens] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 14/140 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAE-------TGPIRVFSDGRDPEVQ 143 G DD + KP RE+ ARV AI RR +S+ R E G +++ + + + Sbjct: 86 GADDYMTKPFSPREVTARVKAILRRADISSLSQGREEEKDGQILIGELKILPEHYEAYFK 145 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 E L +E +L YL ++G+ + + + SA++ +D A + +V+ HIS LR K+ + Sbjct: 146 SEQLELTPKEFELLLYLGKHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIES 204 Query: 204 KLGFDPVDSK--RFLGYSID 221 P+ K R LGY ++ Sbjct: 205 NTK-KPIYIKTIRGLGYKLE 223 >gi|148257911|ref|YP_001242496.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146410084|gb|ABQ38590.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 221 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 4/150 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 + P++ ++ ++ + D G DD + KP +RE+ AR A+ RR S+N GP Sbjct: 72 RTPVLVLTARSAVDDRIGALDLGADDYLIKPFDYRELEARARALLRRAAGQSDNLLTLGP 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + GR V G+ L RRE +LE L A G+ VAK ++ ++ FD+ N V Sbjct: 132 LVIDRAGRTASVAGQPLDLTRRELTVLEILAARPGRYVAKEELVEQLFS-FDQDPSPNAV 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E I++LR+KL + ++R LGY + Sbjct: 191 EQFIARLRRKLAATTV--EIKTERGLGYQL 218 >gi|157163846|ref|YP_001461164.1| DNA-binding response regulator CreB [Escherichia coli HS] gi|191167432|ref|ZP_03029247.1| transcriptional regulatory protein CreB [Escherichia coli B7A] gi|193070613|ref|ZP_03051551.1| transcriptional regulatory protein CreB [Escherichia coli E110019] gi|194439266|ref|ZP_03071345.1| transcriptional regulatory protein CreB [Escherichia coli 101-1] gi|209921865|ref|YP_002295949.1| DNA-binding response regulator CreB [Escherichia coli SE11] gi|218698234|ref|YP_002405901.1| DNA-binding response regulator CreB [Escherichia coli 55989] gi|260871120|ref|YP_003237522.1| DNA-binding response regulator CreB in two-component regulatory system with CreC [Escherichia coli O111:H- str. 11128] gi|293476662|ref|ZP_06665070.1| transcriptional regulatory protein creB [Escherichia coli B088] gi|300824440|ref|ZP_07104553.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|301024658|ref|ZP_07188307.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|307313667|ref|ZP_07593286.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|309795675|ref|ZP_07690091.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|331650886|ref|ZP_08351914.1| transcriptional regulatory protein CreB [Escherichia coli M718] gi|331666227|ref|ZP_08367108.1| transcriptional regulatory protein CreB [Escherichia coli TA271] gi|331680565|ref|ZP_08381224.1| transcriptional regulatory protein CreB [Escherichia coli H591] gi|157069526|gb|ABV08781.1| transcriptional regulatory protein CreB [Escherichia coli HS] gi|190902572|gb|EDV62306.1| transcriptional regulatory protein CreB [Escherichia coli B7A] gi|192956096|gb|EDV86561.1| transcriptional regulatory protein CreB [Escherichia coli E110019] gi|194421748|gb|EDX37756.1| transcriptional regulatory protein CreB [Escherichia coli 101-1] gi|209915124|dbj|BAG80198.1| two-component regulator protein [Escherichia coli SE11] gi|218354966|emb|CAV02211.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli 55989] gi|257767476|dbj|BAI38971.1| DNA-binding response regulator CreB in two-component regulatory system with CreC [Escherichia coli O111:H- str. 11128] gi|291321115|gb|EFE60557.1| transcriptional regulatory protein creB [Escherichia coli B088] gi|299880329|gb|EFI88540.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|300523082|gb|EFK44151.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|306906490|gb|EFN37003.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|308120799|gb|EFO58061.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|315063700|gb|ADT78027.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli W] gi|323176305|gb|EFZ61897.1| transcriptional regulatory protein creB [Escherichia coli 1180] gi|323380218|gb|ADX52486.1| two component transcriptional regulator, winged helix family [Escherichia coli KO11] gi|323945811|gb|EGB41857.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|323970848|gb|EGB66100.1| response regulator receiver domain-containing protein [Escherichia coli TA007] gi|324118351|gb|EGC12245.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|331051340|gb|EGI23389.1| transcriptional regulatory protein CreB [Escherichia coli M718] gi|331066438|gb|EGI38315.1| transcriptional regulatory protein CreB [Escherichia coli TA271] gi|331072028|gb|EGI43364.1| transcriptional regulatory protein CreB [Escherichia coli H591] Length = 229 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ V + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQLVPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ ++ Sbjct: 125 FSSPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|16802333|ref|NP_463818.1| hypothetical protein lmo0287 [Listeria monocytogenes EGD-e] gi|47096376|ref|ZP_00233971.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|224498864|ref|ZP_03667213.1| hypothetical protein LmonF1_03833 [Listeria monocytogenes Finland 1988] gi|224502419|ref|ZP_03670726.1| hypothetical protein LmonFR_07849 [Listeria monocytogenes FSL R2-561] gi|254828747|ref|ZP_05233434.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|254900524|ref|ZP_05260448.1| hypothetical protein LmonJ_11939 [Listeria monocytogenes J0161] gi|254913525|ref|ZP_05263537.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|254937894|ref|ZP_05269591.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|255026056|ref|ZP_05298042.1| hypothetical protein LmonocytFSL_06315 [Listeria monocytogenes FSL J2-003] gi|255029993|ref|ZP_05301944.1| hypothetical protein LmonL_14634 [Listeria monocytogenes LO28] gi|284800586|ref|YP_003412451.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578] gi|284993772|ref|YP_003415540.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923] gi|16409652|emb|CAD00814.1| lmo0287 [Listeria monocytogenes EGD-e] gi|47015250|gb|EAL06188.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|258601154|gb|EEW14479.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|258610502|gb|EEW23110.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|284056148|gb|ADB67089.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578] gi|284059239|gb|ADB70178.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923] gi|293591535|gb|EFF99869.1| DNA-binding response regulator [Listeria monocytogenes J2818] Length = 237 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 91/189 (48%), Gaps = 16/189 (8%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 + +G +LE E +Q D+ ++ L G+ +E+ R +R +P+I ++ S Sbjct: 32 CAYDGDEALELVEEVQP----DLILLDIMLPGRDG--IEVCREVRKKYDMPIIMVTAKDS 85 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET--------GPIRVF 134 + + G DD V KP +RE++ARV A RR +VS++ AE G + + Sbjct: 86 EIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQVSSSTAEEEENSELEIGSLIIH 145 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D +GE L RE +L YL + G+ + + + ++G +D + V+ + Sbjct: 146 PDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREHLLQTVWG-YDYFGDVRTVDVTV 204 Query: 195 SKLRKKLRN 203 +LR+K+ + Sbjct: 205 RRLREKIED 213 >gi|317501115|ref|ZP_07959321.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|331090143|ref|ZP_08339031.1| hypothetical protein HMPREF1025_02614 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897502|gb|EFV19567.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|330402089|gb|EGG81661.1| hypothetical protein HMPREF1025_02614 [Lachnospiraceae bacterium 3_1_46FAA] Length = 221 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 12/187 (6%) Query: 38 LQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 L S + D+ ++ L G GE+VL P I +P+I +S + + G Sbjct: 40 LLSQVKPDLVLLDLMLPGLSGEEVL--PHI----KGIPVIIMSAKVDVDNKVALLLGGAV 93 Query: 97 DVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRE 153 D + KP + RE+LAR+ A++ R S ++E I++ D +++ L R E Sbjct: 94 DYMTKPFYTRELLARI-AVHLRTFDSFAKSEILTFEEIKLNIDTHIAQIKDVEIKLTRTE 152 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 IL+ LM N+ + V+K+ + I + E + +++HIS LRKKLR G + +++ Sbjct: 153 YAILKLLMQNQTQVVSKSHLLDHISEDTPDCTESS-LKTHISNLRKKLRAVNGKEYIEAV 211 Query: 214 RFLGYSI 220 +G+ + Sbjct: 212 WGIGFKM 218 >gi|315644524|ref|ZP_07897656.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315280031|gb|EFU43328.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 226 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/161 (22%), Positives = 84/161 (52%), Gaps = 2/161 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R IR ++ +P++ ++ + + F+ G DD + KP E++ RV A+ +R +V Sbjct: 63 ELCREIRRNTGIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKRYQV 122 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ G +++ + + ++F LP +E +L L + G + + ++ I+G Sbjct: 123 AASQTVNVGKLQMNRRTYEVKTADDIFALPLKEFELLFKLGSYPGSTLTRDRLIEDIWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D E ++ H+++LR++ + + + R LGY ++ Sbjct: 182 YDFEGNERTLDVHVNRLRERFPEEKYRFRIRTVRGLGYRLE 222 >gi|313900334|ref|ZP_07833828.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2] gi|312954883|gb|EFR36557.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2] Length = 225 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 17/144 (11%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAAIYRRL 119 +R H VP++ +S L+ ++ G DD + KP+ R +L R + ++R+ Sbjct: 67 VREHKAVPILIMSARKDRNDQLNGYELGADDYIEKPVDPQILAAKIRAVLQRTSDLHRKE 126 Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +S E R F DG E+ + F L L L++N GK + K IF++I Sbjct: 127 TISCCGVVIERAQHRAFVDGNLMELNAKEFEL-------LTLLVSNAGKTLRKEYIFASI 179 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G+ D E+ + HI LR K+ Sbjct: 180 WGM-DSFSEQQTLTVHIKMLRDKI 202 >gi|312871971|ref|ZP_07732053.1| putative response regulator protein GraR [Lactobacillus iners LEAF 2062A-h1] gi|312873854|ref|ZP_07733897.1| putative response regulator protein GraR [Lactobacillus iners LEAF 2052A-d] gi|311090636|gb|EFQ49037.1| putative response regulator protein GraR [Lactobacillus iners LEAF 2052A-d] gi|311092548|gb|EFQ50910.1| putative response regulator protein GraR [Lactobacillus iners LEAF 2062A-h1] Length = 222 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 6/156 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S VP+I I+ + + G D+ + KPI +A++ A+ RR KV + Sbjct: 66 IRQISHVPIIFITSHTESGDIVRAMQMGADEYITKPIDITVTIAKIQAVLRRTYDYKVGS 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G +++ E + V L R E ILE L + K + I + + D Sbjct: 126 DSIMYGDLKLNLSVAHLEGKNFVLELTRTELLILEILFNFKNKIAKREDIINYCWQ-GDA 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +++N + +I++LRKKL+ +G+D + +K+ +GY Sbjct: 185 FIDDNTLAVNIARLRKKLKT-VGYDELIQTKKGIGY 219 >gi|283835613|ref|ZP_06355354.1| DNA-binding response regulator TctD [Citrobacter youngae ATCC 29220] gi|291068825|gb|EFE06934.1| DNA-binding response regulator TctD [Citrobacter youngae ATCC 29220] Length = 224 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 19/218 (8%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPR 65 ++ALV++G F D V F+ L + L S + A+ I G LE+ + Sbjct: 17 EKALVQNG----FAVDCV----FDGLAADHLLHS----ETYALAVLDINMPGLDGLEVVQ 64 Query: 66 IIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 +R Q +P++ ++ ++ + + G DD + KP E+ AR+ A+ RR Sbjct: 65 RLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLAKPFEIEELDARLRALLRRSAGQVQ 124 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + F D +QG+ L RE+ +L LM R + V++ Q+F ++ L DE Sbjct: 125 GIQQLGELAFHDEGYFLLQGQPLALTPREQALLTVLMYRRLRPVSRQQLFEQVFSLSDEV 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 E+ +E +I +LRKKL+ G D + + R LGY ++ Sbjct: 185 SPES-IELYIHRLRKKLQ---GSDVRIATLRGLGYVLE 218 >gi|228923822|ref|ZP_04087100.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835951|gb|EEM81314.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 225 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 7/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++D S + + +G DD + KP E++ARV AI RR Sbjct: 62 EICRQIRLVKTTPIIIVTDNVSSKDCVAGLQAGADDYIRKPFVKEELVARVQAILRRSD- 120 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + E + +F D V+ GE L +RE +L +L+ N+ +++ + + Sbjct: 121 CNQQKEINFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ V NVV+ +I +RKKL+ + + + GYS+ Sbjct: 181 VWG-YNVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 223 >gi|206978377|ref|ZP_03239249.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206743411|gb|EDZ54846.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|324324690|gb|ADY19950.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 225 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 8/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTVDLVRGLKIGADDYVTKPFHEEELFARIEAVLRRTNE 121 Query: 122 SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G I + + + V E L E +L + + +++ Q+ I+GL Sbjct: 122 HKQIQYHGII--WDEAKHSVSVHNEELFLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 + E+ V+SHI LR KLR K+ F P+D+ K G W Sbjct: 180 -NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDNHLKTVYGVGYRW 220 >gi|154687043|ref|YP_001422204.1| PhoP [Bacillus amyloliquefaciens FZB42] gi|154352894|gb|ABS74973.1| PhoP [Bacillus amyloliquefaciens FZB42] Length = 239 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 14/140 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAE-------TGPIRVFSDGRDPEVQ 143 G DD + KP RE+ ARV AI RR +S+ R E G +++ + + + Sbjct: 96 GADDYMTKPFSPREVTARVKAILRRADISSLSQGREEEKDGQILIGELKILPEHYEAYFK 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 E L +E +L YL ++G+ + + + SA++ +D A + +V+ HIS LR K+ + Sbjct: 156 SEQLELTPKEFELLLYLGKHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIES 214 Query: 204 KLGFDPVDSK--RFLGYSID 221 P+ K R LGY ++ Sbjct: 215 NTK-KPIYIKTIRGLGYKLE 233 >gi|311103716|ref|YP_003976569.1| phosphate regulon transcriptional regulatory protein PhoB [Achromobacter xylosoxidans A8] gi|310758405|gb|ADP13854.1| phosphate regulon transcriptional regulatory protein PhoB [Achromobacter xylosoxidans A8] Length = 232 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 5/149 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130 VP+I ++ S Q +D ++G DD + KP +E++AR+ A+ RR +++++ + G Sbjct: 77 VPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRAPQLTDDVIDVGG 136 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENV 189 +++ + + E R+L + M + + +++Q+ ++G D VEE Sbjct: 137 LKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQVWG--DHVFVEERT 194 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ HI +LRK L V++ R GY Sbjct: 195 VDVHIRRLRKALEPSGHDAHVETVRGSGY 223 >gi|255526832|ref|ZP_05393730.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187597|ref|ZP_06855991.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509453|gb|EET85795.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047554|gb|EFG86994.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 223 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 8/161 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + R +R S +P+I ++ S L + G DD + KP + +LAR+ + +R Sbjct: 63 ICRELRKTSDIPIIIVTSRDSEVDELMSMNLGADDFITKPYNTDILLARITNLLKRTYGN 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 LK +NN + + + L + E +IL YL+ N+G V + + ++ Sbjct: 123 LK-NNNVLSYKDFNLNLSNAAVNYKDKSLELTKNEVKILSYLINNKGNIVKRDSLMEYLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 D V+++ + +I++LRKKL ++G +P++++R LGY Sbjct: 182 KA-DYFVDDSTLTVNINRLRKKLE-EIGIENPIETRRGLGY 220 >gi|238855833|ref|ZP_04646122.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus jensenii 269-3] gi|282933323|ref|ZP_06338706.1| transcriptional regulatory protein WalR [Lactobacillus jensenii 208-1] gi|313472807|ref|ZP_07813295.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153] gi|238831496|gb|EEQ23844.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus jensenii 269-3] gi|281302508|gb|EFA94727.1| transcriptional regulatory protein WalR [Lactobacillus jensenii 208-1] gi|313448883|gb|EFR61222.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153] Length = 237 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 12/171 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R +P+I ++ + + + G DD V KP +RE+LARV A RR Sbjct: 62 LEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELLARVKANLRRRD 121 Query: 121 VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + +A+ G + + D E G+ L RE +L YL ++ G+ + + Sbjct: 122 IVQKQADESENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + +G +D + V+ + +LR+K+ N + + ++R +GY + Sbjct: 182 EHLLQTAWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGYYV 231 >gi|229119933|ref|ZP_04249189.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201] gi|228663526|gb|EEL19110.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201] Length = 237 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 11/150 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 63 IEVCRKLRDKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122 Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V SN + F + E L +E +L++ +N G+ KTQ Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 +F ++ D +E +N V HI KLRKK+ Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKI 210 >gi|221633806|ref|YP_002523032.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159] gi|221156904|gb|ACM06031.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159] Length = 253 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 6/166 (3%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L + R D+ ++ L G + ++ R+IR S P++ ++ S + F G DD Sbjct: 57 LARTIRPDLIILDLMLPGIDGR--DVCRLIRKWSSAPILVLTARDSEDDIVALFQEGADD 114 Query: 98 VVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR 155 V KP RE+ AR+ A+ RR + N G + +F D +G L RE Sbjct: 115 YVVKPFRTRELFARIDALLRRSAETTAGNVLTAGTLVIFRDEHRVVYRGREVHLAPREFA 174 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +L L+ G+ + ++ ++G + V+ V+ HI ++R+ L Sbjct: 175 LLTALVERAGRVCTRQELLDLVWG--QDVVDLRNVDVHIHRIREAL 218 >gi|210634653|ref|ZP_03298205.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279] gi|210158725|gb|EEA89696.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279] Length = 239 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 12/161 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE+V R IR S VP+I ++ ++ + + G DD + KP RE++ARV A++ Sbjct: 64 GERVC---RAIRDTSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALF 120 Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR +++ + G + + G V+G+ L E ++L L + G+ + + Sbjct: 121 RRTHLADEPQVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRME 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 + + G +D E ++SH+ K LR KLG DP K Sbjct: 181 LVEKVLG-YDFEGYERTIDSHV----KNLRAKLGDDPKKPK 216 >gi|90413072|ref|ZP_01221069.1| putative transcriptional regulatory protein PhoP [Photobacterium profundum 3TCK] gi|90325915|gb|EAS42361.1| putative transcriptional regulatory protein PhoP [Photobacterium profundum 3TCK] Length = 224 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 3/148 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130 ++P++ ++ + Q + ++G DD + KP E++AR++A+ RR G Sbjct: 72 RLPVLILTARANWQDKVTGLEAGADDYLVKPFQKEEMVARLSALVRRSAGFVKPEMSAGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 IRV + V + L E +LEYLM + + V+K ++ +Y D+ + N + Sbjct: 132 IRVDLLAKQVFVGEALLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYE--DQEGDPNTI 189 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E IS+LRKK +P+ + R GY Sbjct: 190 EVMISRLRKKFITTGQDNPITTIRGQGY 217 >gi|56540563|gb|AAV92735.1| PmrA [Escherichia coli] Length = 222 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 15/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G + E QS S + L E L Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60 Query: 62 E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L RI + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 NN+ E+ G + + R + GE L +E +L LM G V + +++ Sbjct: 119 -HNNQGESELILGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 IY +D N +E HI LR+K+G + + R GY + N Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219 >gi|49484821|ref|YP_042045.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|82752206|ref|YP_417947.1| two-component sensor response regulator [Staphylococcus aureus RF122] gi|253733930|ref|ZP_04868095.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257424102|ref|ZP_05600531.1| two-component sensor response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257426782|ref|ZP_05603184.1| two-component sensor response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257429417|ref|ZP_05605804.1| two-component sensor response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257435025|ref|ZP_05611076.1| two-component sensor response regulator [Staphylococcus aureus subsp. aureus M876] gi|282906957|ref|ZP_06314805.1| two-component system OmpR family response regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282909932|ref|ZP_06317741.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912181|ref|ZP_06319977.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282912813|ref|ZP_06320605.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus M899] gi|282922445|ref|ZP_06330135.1| two-component system, OmpR family, response regulator [Staphylococcus aureus subsp. aureus C101] gi|283959394|ref|ZP_06376835.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus A017934/97] gi|293497875|ref|ZP_06665729.1| two-component system, OmpR family, response regulator [Staphylococcus aureus subsp. aureus 58-424] gi|293511459|ref|ZP_06670153.1| two-component system, OmpR family, response regulator [Staphylococcus aureus subsp. aureus M809] gi|293550064|ref|ZP_06672736.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus M1015] gi|295429203|ref|ZP_06821825.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589296|ref|ZP_06947937.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|49242950|emb|CAG41680.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|82657737|emb|CAI82188.1| probable two-component sensor response regulator [Staphylococcus aureus RF122] gi|253728044|gb|EES96773.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257273120|gb|EEV05222.1| two-component sensor response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257276413|gb|EEV07864.1| two-component sensor response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257279898|gb|EEV10485.1| two-component sensor response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257285621|gb|EEV15737.1| two-component sensor response regulator [Staphylococcus aureus subsp. aureus M876] gi|282314666|gb|EFB45052.1| two-component system, OmpR family, response regulator [Staphylococcus aureus subsp. aureus C101] gi|282322913|gb|EFB53232.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus M899] gi|282323877|gb|EFB54193.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282326506|gb|EFB56810.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329856|gb|EFB59377.1| two-component system OmpR family response regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|283788986|gb|EFC27813.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus A017934/97] gi|290919111|gb|EFD96187.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus M1015] gi|291096806|gb|EFE27064.1| two-component system, OmpR family, response regulator [Staphylococcus aureus subsp. aureus 58-424] gi|291465417|gb|EFF07949.1| two-component system, OmpR family, response regulator [Staphylococcus aureus subsp. aureus M809] gi|295126962|gb|EFG56606.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577807|gb|EFH96520.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|312436955|gb|ADQ76026.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315195128|gb|EFU25516.1| probable two-component sensor response regulator [Staphylococcus aureus subsp. aureus CGS00] Length = 221 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 6/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S VP+I IS + G DD + KP + +A++ A+ RR L V+N Sbjct: 66 IRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLSVAN 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + D Q + L E +IL+ L N K V++T + + + Sbjct: 126 DSLTVKGCTLILDEAKVVYQEQSIQLSLTELQILKLLFQNEDKYVSRTALIEKCWE-SEN 184 Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 +++N + ++++LRKKL N +G D + +K+ +GY + Sbjct: 185 FIDDNTLAVNMTRLRKKL-NTIGVNDFIITKKNVGYKV 221 >gi|38233451|ref|NP_939218.1| putative two component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199711|emb|CAE49371.1| Putative two component system response regulator [Corynebacterium diphtheriae] Length = 230 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 79/165 (47%), Gaps = 8/165 (4%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R P++ ++ + + D+G DD + KP E+LARV ++ RR Sbjct: 60 LEVCRTLRGSGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRA 119 Query: 120 KV----SNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S ++ E +R+ D RD G L R E +L+ LMAN + +++ I Sbjct: 120 AAESVGSGSQGELSFEDLRLNPDTRDVTRGGRPISLTRTEFALLQLLMANSRRVLSRASI 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G +D N +E +I LR+K ++ + + R +GY Sbjct: 180 LEEVWG-YDFPTSGNALEVYIGYLRRKTESEGEPRLIHTVRGVGY 223 >gi|15925069|ref|NP_372603.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927654|ref|NP_375187.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus subsp. aureus N315] gi|21283732|ref|NP_646820.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus subsp. aureus MW2] gi|49486873|ref|YP_044094.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57650753|ref|YP_186887.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus COL] gi|87160950|ref|YP_494682.1| DNA-binding response regulator, KdpE [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195981|ref|YP_500794.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268531|ref|YP_001247474.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394595|ref|YP_001317270.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151222196|ref|YP_001333018.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156980395|ref|YP_001442654.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu3] gi|161510292|ref|YP_001575951.1| KDP operon transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141601|ref|ZP_03566094.1| KDP operon transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315709|ref|ZP_04838922.1| DNA-binding response regulator, KdpE [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731083|ref|ZP_04865248.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733086|ref|ZP_04867251.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus subsp. aureus TCH130] gi|255006868|ref|ZP_05145469.2| DNA-binding response regulator, KdpE [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794530|ref|ZP_05643509.1| response regulator KdpE [Staphylococcus aureus A9781] gi|258411240|ref|ZP_05681518.1| two-component system response regulator KdpE [Staphylococcus aureus A9763] gi|258419757|ref|ZP_05682723.1| two component transcriptional regulator [Staphylococcus aureus A9719] gi|258438064|ref|ZP_05689443.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|258441312|ref|ZP_05690797.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus A8115] gi|258446995|ref|ZP_05695147.1| response regulator receiver [Staphylococcus aureus A6300] gi|258449772|ref|ZP_05697872.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus A6224] gi|258453209|ref|ZP_05701200.1| response regulator protein [Staphylococcus aureus A5948] gi|258453490|ref|ZP_05701469.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus A5937] gi|262049249|ref|ZP_06022124.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus D30] gi|262052474|ref|ZP_06024672.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus 930918-3] gi|269203716|ref|YP_003282985.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus ED98] gi|282895229|ref|ZP_06303445.1| kdpE protein [Staphylococcus aureus A8117] gi|282923069|ref|ZP_06330754.1| kdpE protein [Staphylococcus aureus A9765] gi|282929309|ref|ZP_06336880.1| kdpE protein [Staphylococcus aureus A10102] gi|284025115|ref|ZP_06379513.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus 132] gi|294850565|ref|ZP_06791292.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus A9754] gi|295407627|ref|ZP_06817418.1| two component transcriptional regulator [Staphylococcus aureus A8819] gi|296275710|ref|ZP_06858217.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus MR1] gi|297210101|ref|ZP_06926494.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246624|ref|ZP_06930455.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus A8796] gi|300910463|ref|ZP_07127915.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus TCH70] gi|304379261|ref|ZP_07362000.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13701874|dbj|BAB43166.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus subsp. aureus N315] gi|14247852|dbj|BAB58241.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu50] gi|21205174|dbj|BAB95868.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus subsp. aureus MW2] gi|49245316|emb|CAG43791.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57284939|gb|AAW37033.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus COL] gi|87126924|gb|ABD21438.1| DNA-binding response regulator, KdpE [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203539|gb|ABD31349.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741600|gb|ABQ49898.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149947047|gb|ABR52983.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374996|dbj|BAF68256.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722530|dbj|BAF78947.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu3] gi|160369101|gb|ABX30072.1| KDP operon transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725210|gb|EES93939.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728994|gb|EES97723.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus subsp. aureus TCH130] gi|257788502|gb|EEV26842.1| response regulator KdpE [Staphylococcus aureus A9781] gi|257839995|gb|EEV64461.1| two-component system response regulator KdpE [Staphylococcus aureus A9763] gi|257844239|gb|EEV68622.1| two component transcriptional regulator [Staphylococcus aureus A9719] gi|257848481|gb|EEV72471.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|257852356|gb|EEV76281.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus A8115] gi|257854228|gb|EEV77179.1| response regulator receiver [Staphylococcus aureus A6300] gi|257856946|gb|EEV79847.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus A6224] gi|257859155|gb|EEV82012.1| response regulator protein [Staphylococcus aureus A5948] gi|257864362|gb|EEV87111.1| KDP operon transcriptional regulatory protein [Staphylococcus aureus A5937] gi|259159595|gb|EEW44641.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus 930918-3] gi|259162614|gb|EEW47181.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus D30] gi|262076006|gb|ACY11979.1| DNA-binding response regulator KdpE [Staphylococcus aureus subsp. aureus ED98] gi|269941680|emb|CBI50087.1| response regulator protein [Staphylococcus aureus subsp. aureus TW20] gi|282589119|gb|EFB94218.1| kdpE protein [Staphylococcus aureus A10102] gi|282593260|gb|EFB98257.1| kdpE protein [Staphylococcus aureus A9765] gi|282762419|gb|EFC02563.1| kdpE protein [Staphylococcus aureus A8117] gi|285817744|gb|ADC38231.1| DNA-binding response regulator KdpE [Staphylococcus aureus 04-02981] gi|294822585|gb|EFG39027.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus A9754] gi|294967525|gb|EFG43563.1| two component transcriptional regulator [Staphylococcus aureus A8819] gi|296885301|gb|EFH24241.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176524|gb|EFH35790.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus A8796] gi|300888305|gb|EFK83496.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus TCH70] gi|302751961|gb|ADL66138.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342120|gb|EFM08020.1| KDP operon response regulator KdpE [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312830431|emb|CBX35273.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128420|gb|EFT84429.1| KDP operon transcriptional regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315196988|gb|EFU27330.1| KDP operon transcriptional regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320140749|gb|EFW32601.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143724|gb|EFW35501.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329314765|gb|AEB89178.1| Two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus T0131] gi|329724028|gb|EGG60552.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus 21189] gi|329727776|gb|EGG64228.1| putative KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus subsp. aureus 21172] gi|329729288|gb|EGG65696.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus 21193] Length = 231 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 17/200 (8%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRA 69 D I D ++L+ +N + Q+ + + + L+ G + L L IR Sbjct: 11 DHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 H+ +P+I IS QT + D+G +D + KP + E+ AR+ I R ++ + ET Sbjct: 71 HTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIER---IAKSHQETN 127 Query: 130 PIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 VF++G + + + L E +LE L ++GK + I IYG Sbjct: 128 I--VFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIYGYV 185 Query: 182 DEAVEENVVESHISKLRKKL 201 ++ E + H++ LR+KL Sbjct: 186 NKT-EMPSLRVHMTSLRQKL 204 >gi|325847791|ref|ZP_08170013.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480809|gb|EGC83862.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 237 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 13/186 (6%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQT 86 E F + + +E L+ ED+ + L+ +L + IR S VP+I ++ S Sbjct: 29 EVFQAFDGKEGLEIFESEDIDLVLLDLMIPKISGEDLIKEIRNKSNVPVIMVTAKVSEDD 88 Query: 87 TLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIRVFSDGR---DPEV 142 ++ G DD V KP +E++ R+ + RR++ N RA+ I +DGR D E Sbjct: 89 IVNGLKLGADDYVTKPFSPKELMQRIKTVLRRIEKYNIPRAD---IIKTTDGRLEMDLEY 145 Query: 143 Q-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 GE L + E +I++ L +N K + +I +G FD + +++HI + Sbjct: 146 NRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEIIEITFG-FDYDAYDRAIDTHIKNI 204 Query: 198 RKKLRN 203 R+K+ + Sbjct: 205 RQKIED 210 >gi|317404463|gb|EFV84875.1| response regulator [Achromobacter xylosoxidans C54] Length = 232 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 76/149 (51%), Gaps = 5/149 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130 VP+I ++ S Q +D ++G DD + KP +E++AR+ A+ RR +++++ + G Sbjct: 77 VPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRAPQLTDDVIDVGG 136 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENV 189 +++ + + E R+L + M + + +++Q+ ++G D VEE Sbjct: 137 LKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQVWG--DHVFVEERT 194 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ HI +LRK L V++ R GY Sbjct: 195 VDVHIRRLRKALEPSGHDAHVETVRGSGY 223 >gi|317472399|ref|ZP_07931724.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316900119|gb|EFV22108.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 223 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 84/159 (52%), Gaps = 5/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 + R +R S VP+I ++ S L + G DD ++KP + + ++AR++++ +R K V Sbjct: 65 ICRAVREKSDVPIIVVTSRDSEMDELMSMNLGADDFISKPYNTQILVARISSLLKRTKHV 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + + G E L + E +IL L+ ++ K V++ + ++ Sbjct: 125 KEDWQMTHKGLLINLSNSTACHGKEQIELSKNEVKILSVLVKHKEKIVSRDNLMEELWQ- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 +E V++N + +I++LRKKL + +G D + +KR GY Sbjct: 184 SNEFVDDNTLTVNINRLRKKL-DSIGLADYIVTKRGQGY 221 >gi|291522704|emb|CBK80997.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 230 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122 IR S+VP+I IS + + G DD + KP ++A++ A+ RR K+ Sbjct: 67 IRKVSRVPVIFISSASDNMNIVMAMNMGGDDFIAKPFDQTVLIAKMQAMLRRTYDFAKIE 126 Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + V D +GE L R E IL+ LM N GK V++ ++ ++ Sbjct: 127 HVLQCREAVLNV--DDHSLTYRGEQIALSRNEYGILKILMENAGKIVSRERLMERLWET- 183 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +++N + ++++LRKKL D + +K +GY I Sbjct: 184 DSFIDDNTLTVNVNRLRKKLEGAGLKDFITTKFGVGYVI 222 >gi|302869659|ref|YP_003838296.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315503859|ref|YP_004082746.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302572518|gb|ADL48720.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315410478|gb|ADU08595.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 237 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 13/150 (8%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R++R ++ P++ ++ + + G DD V KP E+ AR+ A+ RR Sbjct: 72 EVIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTA 131 Query: 121 VSNNRAETGPIRV-FSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQI 173 E P R+ F+D D E G+ L E ++L YLM N + ++K QI Sbjct: 132 T----GEQAPSRLTFADLELDEETHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQI 187 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ +D ++N+VES+IS LR+K+ N Sbjct: 188 LDHVWN-YDFRGDDNIVESYISYLRRKVDN 216 >gi|238917433|ref|YP_002930950.1| two-component system, OmpR family, response regulator [Eubacterium eligens ATCC 27750] gi|238872793|gb|ACR72503.1| two-component system, OmpR family, response regulator [Eubacterium eligens ATCC 27750] Length = 217 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 36/161 (22%), Positives = 81/161 (50%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S +P++ ++ + + +D F + D + KP + AR+ ++ ++ Sbjct: 59 LEVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLADGYIEKPFSLPVLKARIDSLIKKNY 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E + V + ++ GE + +E +L+ L+ N G+ + + QI ++ Sbjct: 119 GHLEKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKD 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL+ D + + R +GY ++ Sbjct: 179 SEETPYDRVIDVYIKELRKKLQ----LDCITTIRNVGYKLE 215 >gi|162295949|gb|ABX83921.1| AdeR [Acinetobacter baumannii] Length = 247 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 74/163 (45%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +Q P+I ++ + G DD V KP + E++ARV A+ RR + +N Sbjct: 78 IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 137 Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 I + +D + E + L E +I+ +++ K + ++ + Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMNQCM 197 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D E V+SH+SKLRKKL + F + + R +GY +D Sbjct: 198 N--DSDALERTVDSHVSKLRKKLEEQGIFQMLINVRGVGYRLD 238 >gi|118480301|ref|YP_897452.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118419526|gb|ABK87945.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 241 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R + +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 78 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 137 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 138 KTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 197 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 198 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 240 >gi|89902579|ref|YP_525050.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89347316|gb|ABD71519.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 221 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 107/225 (47%), Gaps = 17/225 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +L++D ++ + + L +G +++ E + S D+ ++ L + G V Sbjct: 3 LLLVEDDLMIGESVLDLLRAEGYAVDWVKDGEMADTALDSQTYDLVLLDLGLPRRDGLAV 62 Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R +RA + P++ + ++ ++ D G DD + KP E+LAR+ A+ RR Sbjct: 63 L---RRLRARKDRTPVLVATARDAIAQRVEGLDMGADDYIVKPYELDELLARIRALIRR- 118 Query: 120 KVSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + RAE + + R+ + G+ L RE ILE L+A G +++ Q+ Sbjct: 119 --AAGRAEPVYEHLGVSINPVTREVLLDGQAVVLSAREWSILELLLARPGMVLSRRQLEE 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y D+ + N VE +I LRKKL ++ + + R +GY I Sbjct: 177 KLYSWKDD-LSSNAVEVYIHGLRKKLGPRI----IQNVRGVGYMI 216 >gi|57651500|ref|YP_185598.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus COL] gi|57285686|gb|AAW37780.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus COL] Length = 227 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 7/159 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121 R +R S VP++ +S + + + G DD + KP + ++A++ AIYRR+ Sbjct: 67 RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R T V +D +G + L + E ILE L+ + + V++ I +A++ Sbjct: 127 EEKRTLTWQDAVVDLSKDSIQKGDQTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 185 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DEA V +N + ++++LRKKL +++K GY Sbjct: 186 -DEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGY 223 >gi|51894442|ref|YP_077133.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51858131|dbj|BAD42289.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 234 Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 84/164 (51%), Gaps = 11/164 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-N 123 R IR S VP++ ++ + + G DD V KP RE++ARV AI RR +V+ + Sbjct: 66 REIRRFSTVPILMLTAKEDEVDKVLGLELGADDYVTKPFSPRELIARVRAILRRTRVAES 125 Query: 124 NRAETGPIRVFSDG------RDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +R+ T + +G EV+ ++ L RE +L +LMA+ G+ ++ + Sbjct: 126 SRSRTAADEILREGDITINLTSYEVRKGDKLLELTPREFELLRFLMAHAGQVFSREALLE 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218 ++G +D + V+ + +LR+KL N + + ++R +GY Sbjct: 186 EVWG-YDYYGDVRTVDVTVRRLREKLEENSARPEYIKTRRGVGY 228 >gi|325294901|ref|YP_004281415.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065349|gb|ADY73356.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] Length = 223 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 5/178 (2%) Query: 31 SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS---QVPLIGISDYPSLQTT 87 +L+ +E L+ I L+ G L++ + IR +S VP+I ++ T Sbjct: 30 TLDGKEALEKIKTNSYDLIILDLMLPGASGLDICKEIRENSINKDVPVIVLTALSDEDTK 89 Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEV 146 + F G DD V KP +E+LAR+ A+ RR V E I + V G Sbjct: 90 VKGFSIGADDYVTKPFSMKELLARIEAVLRRAGYVRKAILEFDGIVYDKRSKSVTVDGNS 149 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 L + E ++LE+ + + + ++ ++ I+G D V+ +IS+LRKKL +K Sbjct: 150 IYLTKTEFQLLEFFLEHPEQLFSREELLEKIWG-HDHNETTRTVDVYISRLRKKLGDK 206 >gi|319942120|ref|ZP_08016438.1| hypothetical protein HMPREF9464_01657 [Sutterella wadsworthensis 3_1_45B] gi|319804330|gb|EFW01214.1| hypothetical protein HMPREF9464_01657 [Sutterella wadsworthensis 3_1_45B] Length = 218 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 12/153 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ET 128 P++ + ++ + DSG DD + KP E+ AR+ A+ RR S RA E Sbjct: 73 TPVLVTTARDTVDDRIKGLDSGADDYLIKPYDLDELSARIRALLRR---SAGRADPVIER 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G +++ R+ +GE L +E +L L +G ++ Q+ +Y +D V N Sbjct: 130 GELKISPATREVTYKGEPVILSSKEYALLAALAERKGVVWSRAQLEEKLYN-WDNTVGSN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E HI LRKKL + + + R +GY ++ Sbjct: 189 AIEVHIHHLRKKLADS----AIKTVRGVGYMLE 217 >gi|317123887|ref|YP_004097999.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315587975|gb|ADU47272.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 240 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 5/130 (3%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150 G DD V KP E++AR+ A+ RR + + + T + + D + G V L Sbjct: 104 GGDDYVTKPFSLEEVVARIRAVLRRTGSTVDESATLRFHDLELNEDSHEVRRAGRVVELS 163 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 E ++L YL+ N + V+K QI ++ +D E +VES+IS LR+K+ + G + Sbjct: 164 PTEFKLLRYLLLNPNRVVSKLQILDHVWD-YDFRGESGIVESYISYLRRKI-DADGPPLI 221 Query: 211 DSKRFLGYSI 220 +KR +GY + Sbjct: 222 HTKRGVGYVL 231 >gi|294146553|ref|YP_003559219.1| two-component system response regulator [Sphingobium japonicum UT26S] gi|292676970|dbj|BAI98487.1| two-component system response regulator [Sphingobium japonicum UT26S] Length = 236 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 7/166 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +RAH VP+ +S + + G DD V KP RE++AR AI RR Sbjct: 62 LEVCRRLRAHDDVPIFFLSSRDDEIDRVLGIELGGDDYVVKPFSPREVVARSMAILRRAS 121 Query: 121 VSNNRAET-GPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E G IR D E G L E IL L+A + ++ QI Sbjct: 122 ARPPAVEAIGAIRHGRLSLDTESWSAHWGGAEVSLTVTEFTILRTLLAMPSRIFSRDQII 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G A+ + V+SHI LR+K + GFD ++++ +GY + Sbjct: 182 DRFRGP-GFALTDRTVDSHIRNLRRKFADVGGFDIIETRPGIGYRL 226 >gi|239909225|ref|YP_002955967.1| OmpR family two-component response regulator [Desulfovibrio magneticus RS-1] gi|239799092|dbj|BAH78081.1| OmpR family two-component response regulator [Desulfovibrio magneticus RS-1] Length = 223 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 102/217 (47%), Gaps = 13/217 (5%) Query: 13 DGYIALFGDDGVSLEGF---NSLEFEEWLQSSARED--VSAIEAFLIG-KGEKVLELPRI 66 D IA F G+ GF ++ + L +A E V+ I+ L G G +V+E R Sbjct: 9 DEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGLQVIEELR- 67 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--N 124 R P+I +S S++ + ++G DD ++KP E+LARV A+ RR ++ Sbjct: 68 -RRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRSTSASEPT 126 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDE 183 R G + + R+ L RE +LEY M N GK ++KT I ++ FD Sbjct: 127 RLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVWDYHFDP 186 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+V+ + +LR K+ + + R +GY + Sbjct: 187 --QTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVL 221 >gi|159039592|ref|YP_001538845.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157918427|gb|ABV99854.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 233 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 13/150 (8%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R++R ++ P++ ++ + + G DD V KP E+ AR+ A+ RR Sbjct: 68 EVIRMMREGGARTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR-- 125 Query: 121 VSNNRAETGPIRV-FSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E P R+ F+D + G+ L E ++L YLM N + ++K QI Sbjct: 126 --SASGEQAPARLTFADLELDEEAHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ +D ++N+VES+IS LR+K+ N Sbjct: 184 LDHVWN-YDFRGDDNIVESYISYLRRKVDN 212 >gi|150017826|ref|YP_001310080.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904291|gb|ABR35124.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 227 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 6/144 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +I+R S V + ++ +L ++ + G D+ + KP+ RE+ ARV A++RR+ Sbjct: 62 EVCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVGC 121 Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + D R ++ GE L E IL L +N+GK + I + Sbjct: 122 KKENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTREAIIERAF 181 Query: 179 GL-FDEAVEENVVESHISKLRKKL 201 G+ FD + + ++ HI LRKK+ Sbjct: 182 GMEFDGS--DRSIDVHIKNLRKKI 203 >gi|322616467|gb|EFY13376.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619718|gb|EFY16593.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622586|gb|EFY19431.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629736|gb|EFY26511.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632543|gb|EFY29289.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636962|gb|EFY33665.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641500|gb|EFY38138.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646035|gb|EFY42551.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649665|gb|EFY46096.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654035|gb|EFY50358.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658568|gb|EFY54830.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663425|gb|EFY59627.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670159|gb|EFY66299.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671396|gb|EFY67518.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676753|gb|EFY72820.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682676|gb|EFY78695.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686356|gb|EFY82338.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195686|gb|EFZ80862.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199834|gb|EFZ84923.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202827|gb|EFZ87863.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209097|gb|EFZ94034.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210902|gb|EFZ95768.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217943|gb|EGA02658.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222390|gb|EGA06767.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226550|gb|EGA10755.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229745|gb|EGA13868.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232970|gb|EGA17066.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240705|gb|EGA24747.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243019|gb|EGA27040.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247540|gb|EGA31494.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252711|gb|EGA36549.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259127|gb|EGA42771.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259947|gb|EGA43575.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268051|gb|EGA51530.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269901|gb|EGA53350.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 226 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 14/214 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + L + GY+ + DG + L + +E S I ++ G ++ R + Sbjct: 18 QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 66 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ R Sbjct: 67 RTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 126 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 + + + + G+ L R+E +L L + G+ V +T I S ++G+ FD E Sbjct: 127 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 184 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N V+ I +LR K+ + + + R +GY + Sbjct: 185 TNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218 >gi|315293305|gb|EFU52657.1| response regulator receiver domain protein [Escherichia coli MS 153-1] Length = 229 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 16/226 (7%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGE-KV 60 L++D + D + + EGF+ FE L AR+ V + +G + Sbjct: 8 LVEDEQGIADTLVYMLQQ-----EGFDVEVFERGLPVLDKARQQVPDVMILDVGLPDISG 62 Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 EL R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+ Sbjct: 63 FELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFS 175 K + + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ Sbjct: 123 KKFSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +++ + + V+ HI LR KLR P+++ R +GYS+ Sbjct: 182 SVWEDAQDTYDRT-VDPHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|325104913|ref|YP_004274567.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] gi|324973761|gb|ADY52745.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] Length = 224 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 3/160 (1%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D I L+ G LE+ I++ H + +I IS SL + G DD ++KP Sbjct: 44 DYDCILLDLMLPGGNGLEVLNILKKHKKNAGVIIISAKDSLDDKIKGLQIGADDYLSKPF 103 Query: 104 HHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 E+ AR+ ++ RR N+ T + V + +V PL R+E +L +LM Sbjct: 104 FLPELAARIHSVIRRRNFENSNIITYEELEVDVISKTVKVNHIPVPLTRKEFDLLLFLMG 163 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEE-NVVESHISKLRKKL 201 N+ K V KT I + G E ++ + + +HI L++KL Sbjct: 164 NKNKVVTKTAIAEHLSGDLAEMLDNYDFIYAHIKNLKRKL 203 >gi|255018420|ref|ZP_05290546.1| two-component response phosphate regulator [Listeria monocytogenes FSL F2-515] Length = 159 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 18/122 (14%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--------------TGPIRVFSDGRD 139 G DD + KP RE++AR+ AI RR + +AE G +++ D + Sbjct: 18 GADDYMTKPFSPREVVARIKAILRR---TEGKAEIIEELTEDVEAAILIGDLKILPDSYE 74 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 +Q ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR Sbjct: 75 VYLQDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRD 133 Query: 200 KL 201 K+ Sbjct: 134 KI 135 >gi|256824367|ref|YP_003148327.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687760|gb|ACV05562.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 222 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 20/171 (11%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +RA S+ ++ ++ + L+ G DD + KP RE++ARV A+ RR + Sbjct: 58 IEVCRRVRAFSECYVLMLTARGDERHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPR 117 Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + E P RV D V G+V L R E +L L + ++ Q+ Sbjct: 118 TTVSAPE--PERVCGDLVIDLAAHGARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLI 175 Query: 175 SAIYGLFDEAV--EENVVESHISKLRKKLRNKLGFDP---VDSKRFLGYSI 220 ++ D A +E +V+ HI K LR KL DP +D+ R +GY + Sbjct: 176 DIVW---DPAWVGDERLVDVHI----KNLRRKLDADPARYIDTVRGVGYRM 219 >gi|206579530|ref|YP_002239491.1| DNA-binding response regulator [Klebsiella pneumoniae 342] gi|288936339|ref|YP_003440398.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|206568588|gb|ACI10364.1| DNA-binding response regulator [Klebsiella pneumoniae 342] gi|288891048|gb|ADC59366.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] Length = 238 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 9/157 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L+ G LE+ R IR ++ +P+I IS S + + G DD + KP E++AR Sbjct: 54 LMLPGVDGLEICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIAR 113 Query: 112 VAAIYRR-------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 V A++RR L + R + + R+ +++GEV L RE +L Y + Sbjct: 114 VKALFRRQEAMGQNLLMDAGRLSCHGLSIDPLSREVKLRGEVVDLTPREFDLLYYFARHP 173 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 G+ ++ + ++G E E+ V +HI++LR K+ Sbjct: 174 GEVFSRLALLEQVWGYQHEGY-EHTVNTHINRLRSKI 209 >gi|145635435|ref|ZP_01791136.1| transcriptional regulatory protein [Haemophilus influenzae PittAA] gi|260582810|ref|ZP_05850596.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae NT127] gi|145267309|gb|EDK07312.1| transcriptional regulatory protein [Haemophilus influenzae PittAA] gi|260094136|gb|EEW78038.1| phosphate regulon transcriptional regulatory protein PhoB [Haemophilus influenzae NT127] gi|301170463|emb|CBW30070.1| DNA-binding response regulator in two-component regulatory system with QseC [Haemophilus influenzae 10810] Length = 221 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 5/202 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D L+ +G G +++ F + +SA D ++ L G +V Sbjct: 3 ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L+ R H VP++ ++ +L + SG DD + KP E+ AR+ A I RR Sbjct: 63 LQQWR--SNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ E +++ + R + + L RE ++LE M N+ + ++++ I + Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDRVLSRSSIEEKLSS 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 +DE + ++ HI LR+KL Sbjct: 181 -WDEEISSGALDVHIYNLRQKL 201 >gi|150014934|ref|YP_001307188.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901399|gb|ABR32232.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 227 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 5/162 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121 L I + +I ++ L L F+ G +D + KP E+ AR+ +I + + KV Sbjct: 63 LSHISKNCLNTGVIILTAKEELGDKLKAFNLGANDYLTKPFFMEELKARINSILKSMGKV 122 Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N E +++ + + L + ++LEY++ N+G + K QIF + G Sbjct: 123 KRANLLEFKDMKIDMKVKKVYIGTNELELNEKLYKLLEYMVINKGVLLFKEQIFDNVCGY 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 +A E ++E +IS+LRK+L G+ + +KR +GY +D Sbjct: 183 NSDAATE-IIEVYISRLRKQL-GTFGYGKYLITKRGMGYLLD 222 >gi|320161338|ref|YP_004174562.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995191|dbj|BAJ63962.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 239 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 73/139 (52%), Gaps = 7/139 (5%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-----NNR 125 S +P+I ++ S Q L F GVDD + KP E+ AR+ AI R + S N+ Sbjct: 72 SDIPIILLTAKTSEQDKLRGFQLGVDDYLTKPFSFAELAARIRAILARAQRSLPAQRKNQ 131 Query: 126 AETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 G + D R+ + ++ PL E R+LEYL N+G+ V++ ++ ++G++ + Sbjct: 132 ITFGEFIMDLDKRELWRGREQMIPLTPTEFRLLEYLARNKGRAVSEQELSEQVWGVYLSS 191 Query: 185 VEENVVESHISKLRKKLRN 203 + + V +I LR+K+ + Sbjct: 192 -DRSAVRRYIWLLRQKIES 209 >gi|319787643|ref|YP_004147118.1| PhoB family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466155|gb|ADV27887.1| two component transcriptional regulator PhoB, winged helix family [Pseudoxanthomonas suwonensis 11-1] Length = 229 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 20/174 (11%) Query: 57 GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G LEL R R + +VP+I ++ + ++GVDD V KP RE+LAR+ Sbjct: 58 GTSGLELARRWRREALTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSSRELLARIR 117 Query: 114 AIYRR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 A+ RR + N R + RVF+ G P G E R+L + M + Sbjct: 118 AVMRRSREDDEDGSVAAGNLRIDGAAHRVFA-GDAPVAIGPT------EYRLLHFFMTHP 170 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + ++ Q+ ++G VEE ++ HI +LR+ L V + R GY Sbjct: 171 DRVYSRAQLLDHVWG-GSVYVEERTIDVHIRRLRRTLEPFGADGMVQTVRGAGY 223 >gi|228923572|ref|ZP_04086852.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836041|gb|EEM81402.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 229 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 56/179 (31%), Positives = 76/179 (42%), Gaps = 22/179 (12%) Query: 50 EAFLIGKGEKV------LELP--------RIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 EA +I + EKV + LP R IR S+VP+I ++ TL F+ G Sbjct: 37 EALVIFEQEKVDLVILDIMLPELDGWSVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGA 96 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAET-------GPIRVFSDGRDPEVQGEVFP 148 DD V KP +LAR + K S E I V R V Sbjct: 97 DDYVTKPYSPPILLARAKRLLESRKASKKPLENEDDTLSIHGIHVHFPSRTVTVDEADVS 156 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E IL Y M N+G + + Q+ S I+G ++ A ++ V SHI LR KL K + Sbjct: 157 LTHTEFEILVYFMKNQGIVLTREQLISRIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|183599542|ref|ZP_02961035.1| hypothetical protein PROSTU_03022 [Providencia stuartii ATCC 25827] gi|188021789|gb|EDU59829.1| hypothetical protein PROSTU_03022 [Providencia stuartii ATCC 25827] Length = 238 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 22/207 (10%) Query: 23 GVSLEGFNSLEFEEW--LQSSAREDVSAIEAFLI--------GKGEKVLELPRIIRAHSQ 72 G+ L GFN L W L S A++ +++ L+ G G + EL R+ Sbjct: 32 GLELAGFNPL----WVRLLSDAKQQLNSRNFDLMLLDLGLPDGDGNE--ELIAWRRSGQS 85 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P+I ++ + + DSG DD + KP E+++RV A+ RR+ S+ + + Sbjct: 86 IPIIILTARNQMDNLVTSLDSGADDFLTKPFAMPELISRVKAVSRRMAGFSSEIWQLDNL 145 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 ++ + ++ L +E ++L L+ N V K + ++G FD+ +E N +E Sbjct: 146 QLNPINHQVLLNDQLLLLSGKEYQLLYELVKNADNVVRKADLEQRLFG-FDDKIESNSLE 204 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGY 218 HI LR+ K+G D + + R +GY Sbjct: 205 VHIHNLRR----KIGKDRIITIRGIGY 227 >gi|182685018|ref|YP_001836765.1| response regulator [Streptococcus pneumoniae CGSP14] gi|182630352|gb|ACB91300.1| response regulator [Streptococcus pneumoniae CGSP14] Length = 236 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 11/120 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKV------SNNRAET----GPIRVFSDGRDPEVQ 143 G DD + KP RE+LARV A+ RR K S+N A+ G ++V+ + + Sbjct: 96 GADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNIADDSWLFGTLKVYPERHEVYKA 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ L +E +L YLM + + + ++ I+G +D E +V+ HI KLR+K+ + Sbjct: 156 NKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKIED 214 >gi|162149190|ref|YP_001603651.1| two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209545067|ref|YP_002277296.1| winged helix family two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787767|emb|CAP57363.1| Two component Transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209532744|gb|ACI52681.1| two component transcriptional regulator, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 258 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 8/152 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128 P++ +S ++ + +G DD + KP E+ AR+ A+ RR NN ET Sbjct: 107 TPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRR---PNNTRETMLHV 163 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 GP+ + R GE L RE R+LEYLM + + +T + ++ + + N Sbjct: 164 GPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWN-YRFIPQTN 222 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +V+ HI KLR+K+ + + S R G+ + Sbjct: 223 LVDVHIGKLRRKIDDPGAQPLIQSIRGTGFML 254 >gi|160879175|ref|YP_001558143.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427841|gb|ABX41404.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 224 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 4/141 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + IR S +P+ IS S L + G DD + KP +LA+V + +RL+ + Sbjct: 64 LCKEIREFSDIPIFFISARQSDDDILMALNIGGDDYIKKPYALSVLLAKVKVVLKRLEDT 123 Query: 123 NNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R ++G IRV R V+ L +E ++ YL + + K ++F+ ++G Sbjct: 124 KERLPMQSGRIRVDVKARKVYVEDMEIELKNKEFKLFLYLFQHPNIVITKDELFANVWG- 182 Query: 181 FDEAVEENVVESHISKLRKKL 201 D + + HI KLR+K+ Sbjct: 183 -DAFFSDGTLNVHIRKLREKI 202 >gi|315616229|gb|EFU96848.1| transcriptional regulatory protein creB [Escherichia coli 3431] Length = 229 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ V + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQLVPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTAPSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ ++ Sbjct: 125 FSSPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|310827285|ref|YP_003959642.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308739019|gb|ADO36679.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 222 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 19/157 (12%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ ++ ++ + D G DD + KP +E+ AR+ A+ RR + G I Sbjct: 73 TPVLMLTAKGTVDDKVKGLDLGADDYLIKPFSAKELFARIRALSRR----PDHEIKGEII 128 Query: 133 VFSD---------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 F D + PE + + L +E +ILE L+ + + QI ++G FD+ Sbjct: 129 SFEDVSFNTKKNMMQTPENE---YKLSVKEAKILEMLLKRPNQVFTREQILDRVWG-FDK 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V EN +E ++ LRKKL N +D+ R +GY++ Sbjct: 185 EVNENNIEIYVHNLRKKLANTNV--KIDTIRGVGYTL 219 >gi|293376811|ref|ZP_06623031.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|292644563|gb|EFF62653.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] Length = 230 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 66/118 (55%), Gaps = 6/118 (5%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETG--PIRVFSDGRDPEVQGE 145 D G DD + KP RE+++++ AI RR L N+ G I++ + + V G+ Sbjct: 93 LDFGADDYMTKPFSSREVVSKIKAIIRRKEVLSSEKNKNYLGYRSIKLDNSRFEVLVNGQ 152 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 V +E +LE+L+ ++G+ +++ + ++G F+ + +V+ HI K+R+KL++ Sbjct: 153 VIDFTLKEYELLEFLIQHKGQAMSRDVLLDRLWG-FEYDGDTRIVDVHIFKIREKLKD 209 >gi|228993178|ref|ZP_04153099.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|229006775|ref|ZP_04164408.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228754397|gb|EEM03809.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228766504|gb|EEM15146.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 235 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 11/164 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKV 121 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYIAKPFHLDIVMAKVKSALRRGYGEYA 124 Query: 122 SNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S+ ++ +R +F E QG+ L + E +LE LM + V + ++ A Sbjct: 125 SSAESDCFGVRGLLLFPSQHTVEWQGKQIELTKNEFYLLECLMKQANQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL + + +KR GY++ Sbjct: 183 -LWDELAFVDDNTLTVNVKRVRKKLEELGIVNAIVTKRGYGYAL 225 >gi|227823552|ref|YP_002827525.1| two component transcriptional regulator [Sinorhizobium fredii NGR234] gi|227342554|gb|ACP26772.1| two component transcriptional regulator [Sinorhizobium fredii NGR234] Length = 232 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 8/158 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R IRA S VP++ ++ + + G DD + KP + RE+LAR+ AI RR Sbjct: 63 ETCRRIRAVSDVPILMLTAKGEETDRIVGLELGADDYLPKPFNPRELLARLKAILRRRNG 122 Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + T G + + R + G V L + +L L N G+ +++ Q+ A+ Sbjct: 123 SATVSRTFRFGRLEIDPGSRSVRIDGRVCALTSYQFDLLVALAENAGRTLSREQLMDAVK 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 G EA + + ++ H+S++R + + DP +R + Sbjct: 183 GEELEAFDRS-IDVHVSRIRAAIES----DPRHPRRII 215 >gi|77463153|ref|YP_352657.1| phosphate regulon transcriptional regulator, PhoR [Rhodobacter sphaeroides 2.4.1] gi|126462025|ref|YP_001043139.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|221639010|ref|YP_002525272.1| winged helix family two component transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332558027|ref|ZP_08412349.1| Two component transcriptional regulator, winged helix family protein [Rhodobacter sphaeroides WS8N] gi|77387571|gb|ABA78756.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacter sphaeroides 2.4.1] gi|126103689|gb|ABN76367.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17029] gi|221159791|gb|ACM00771.1| Two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides KD131] gi|332275739|gb|EGJ21054.1| Two component transcriptional regulator, winged helix family protein [Rhodobacter sphaeroides WS8N] Length = 230 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 11/154 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 VP+I +S + ++G DD V KP E++ARV + RR + S+ G Sbjct: 81 VPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRARPSS----VGLTL 136 Query: 133 VFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 F D R DPE ++ L E R+L M G+ ++ Q+ ++G D V+ Sbjct: 137 EFEDIRLDPETHKVHRGAQLLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG-RDIYVD 195 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+ H+ +LRK L G DPV + R GY++ Sbjct: 196 SRTVDVHVGRLRKALCLHGGEDPVRTVRGAGYAL 229 >gi|332520078|ref|ZP_08396542.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] gi|332044637|gb|EGI80831.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] Length = 227 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGPIRVFSDGRDPEVQGEVF 147 FD+G DD + KPI + +L++V A+ RRLK A + G + + + + G+ Sbjct: 98 FDAGADDYITKPIKPKLLLSKVKALLRRLKAEEGNATIVKVGNLTINKEEYKIILDGKEI 157 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 LP++E +L L + GK + I I+G + V ++ HI +K+R+K+G Sbjct: 158 LLPKKEFELLSLLASKPGKVFKRENILERIWG-NEVVVGGRTIDVHI----RKIRDKIGD 212 Query: 208 DPVDSKRFLGYS 219 + + + +GY Sbjct: 213 KSIKTIKGVGYK 224 >gi|327482088|gb|AEA85398.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri DSM 4166] Length = 224 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 85/175 (48%), Gaps = 22/175 (12%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VLEL IR Q +I ++ L+ + +SG DD + KP E+LAR+ + Sbjct: 59 GWEVLEL---IRRRKQTRVIMLTANGRLEQKVRGLESGADDYMVKPFQFPELLARIRTLL 115 Query: 117 RR---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RR L+V++ + G R + G+ ++ + F L L LM G+ Sbjct: 116 RRGEAVALPSNLRVADLELDPGRHRAYRSGQRIDLTSKEFAL-------LHLLMRRTGEV 168 Query: 168 VAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +T+I + ++ + FD + NVV+ I +LR K+ G + + R +GY ++ Sbjct: 169 LTRTEITALVWDINFD--CDTNVVDVAIRRLRMKVDEPFGDRLIHTIRGVGYVLE 221 >gi|319744691|gb|EFV97036.1| nisin biosynthesis regulatory protein NisR [Streptococcus agalactiae ATCC 13813] gi|319757769|gb|ADV69711.1| NsuR [Streptococcus suis JS14] Length = 232 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 11/170 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + IR P+I +S S + + G DD + KP +++A+VAA +R + Sbjct: 61 LQICKQIRKSVSSPIIFVSAKDSEDDIVSGLNLGGDDYITKPFSVNQLVAKVAAHLKREE 120 Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N E P+ + + V GE L +RE ILE L + K + +I Sbjct: 121 RYRNAESNESVIRELFPLTFYLQEKLVCVNGEAISLTKREYDILELLSSKTNKVYTREEI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + +Y +A+ ++ E +I ++R K G +P+ + R +GY WN Sbjct: 181 YECVYDDEADALFRSISE-YIYQIRVKF-GPYGINPIKTIRGMGYK--WN 226 >gi|300310592|ref|YP_003774684.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300073377|gb|ADJ62776.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 67/133 (50%), Gaps = 7/133 (5%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR--AETGPIRVFSDGRDPEVQGEVFP 148 D+G DD + KP RE+ AR+ A+ RR + + GPI + + G Sbjct: 114 LDNGADDYITKPFSPRELTARIKALLRRKSPEHAQEVMSAGPITLDPASCSVSLSGARID 173 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV-EENVVESHISKLRKKLRNKLGF 207 + E ++L++ +A+ + +++Q+ ++G D V EE V+ H+ +LRK LR+ Sbjct: 174 IGHAEYKLLKFFLAHPDRVFSRSQLLDRVWG--DHVVIEERTVDVHVLRLRKALRDAEYL 231 Query: 208 DPVDSKRFLGYSI 220 + + R +GY + Sbjct: 232 --IKTVRSVGYML 242 >gi|297563709|ref|YP_003682683.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848157|gb|ADH70177.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 219 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 16/164 (9%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ +P++ ++ ++ T+ + G DD V KP E+LARV RL++ Sbjct: 64 LRRVRSLGVDIPVVILTARDGVRDTVTGLEIGADDYVTKPFRFEELLARV-----RLRMR 118 Query: 123 NNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N R G + + R V+G L RE +LE LM + G+ + + Q+ S Sbjct: 119 NERPTELTVLRAGGLALDLRTRRVAVEGTSVDLTAREFSLLELLMRHPGQVLTRQQMLSH 178 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D NVV+ + + LR K+G + + + R +GY + Sbjct: 179 VWG-YDYDPGSNVVDVFV----RALRRKVGAERIVTVRGMGYRL 217 >gi|170702575|ref|ZP_02893449.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170132509|gb|EDT00963.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 232 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 7/154 (4%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128 + P++ +S + + +G DD + KP E+ R+ A+ RR + + + E Sbjct: 80 RTPVLMLSALSDVDERIRGLRAGGDDYLIKPFDLEEMALRLEALMRRNRAAPAQPEAKLS 139 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 GP+ + R G L E R+LE++M + G+ + +T +F A++G FD Sbjct: 140 VGPLSLDLITRKVHRDGTEIALLPTEFRVLEFMMRHAGQTITRTMLFEAVWGYHFDPGT- 198 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+++ H+ +LRKKL + + R GY + Sbjct: 199 -NLIDVHMGRLRKKLDPPGETPMIQTIRGTGYML 231 >gi|148984378|ref|ZP_01817666.1| response regulator [Streptococcus pneumoniae SP3-BS71] gi|147923155|gb|EDK74269.1| response regulator [Streptococcus pneumoniae SP3-BS71] gi|301800830|emb|CBW33486.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae OXC141] Length = 235 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 11/120 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKV------SNNRAET----GPIRVFSDGRDPEVQ 143 G DD + KP RE+LARV A+ RR K S+N A+ G ++V+ + + Sbjct: 96 GADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNIADDSWLFGTLKVYPERHEVYKA 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ L +E +L YLM + + + ++ I+G +D E +V+ HI KLR+K+ + Sbjct: 156 NKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKIED 214 >gi|50122111|ref|YP_051278.1| DNA-binding transcriptional regulator BaeR [Pectobacterium atrosepticum SCRI1043] gi|49612637|emb|CAG76087.1| two-component system response regulator [Pectobacterium atrosepticum SCRI1043] Length = 242 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 11/178 (6%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD 89 N + EW++ + S I L+ G L L R IR S VP+I ++ L Sbjct: 42 NGNDVVEWVRQHSP---SLILLDLMLPGCDGLTLCRTIRQFSNVPIIMVTARIEEIDRLL 98 Query: 90 FFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN------RAETGPIRVFSDGRDPEVQ 143 + G DD + KP RE++ RV + RR N+ ++ET + + G Sbjct: 99 GLEIGADDYICKPFSPREVVVRVRTLLRRCGWQNDGVKAAEKSETA-LLIDKSGFQASYL 157 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 G+ L E R+L+ L GK ++ + +Y + V + ++SHI LR+KL Sbjct: 158 GQNLDLTPAEFRLLKTLSTEPGKVFSREALLDKLYDDY-RVVTDRTIDSHIKNLRRKL 214 >gi|34556509|ref|NP_906324.1| putative two-component regulator [Wolinella succinogenes DSM 1740] gi|34482223|emb|CAE09224.1| PUTATIVE TWO-COMPONENT REGULATOR [Wolinella succinogenes] Length = 219 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 13/144 (9%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 L I R + P I IS + T L F+ G +D + KP RE+LAR+A+ + Sbjct: 62 LEEIRRIDRKTPAIIISSENDIDTVLKSFERGCNDFLRKPFDPRELLARIASHTQNRPSC 121 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 L R + G +F + ++ PL ++E R+LE L + G+ + +I + + Sbjct: 122 FLIDKRYRFDLGAKLLFC-------EEDIVPLTKKELRLLEILALHEGRVASLEEITNHV 174 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G + E V+ + +S+LRKKL Sbjct: 175 WGYYQE-VDGTSLRGLVSRLRKKL 197 >gi|22298132|ref|NP_681379.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294310|dbj|BAC08141.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 256 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 13/203 (6%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKVLELPRII 67 AL ++GY L DG E N + ++S + +V I ++ G L+L R+I Sbjct: 40 ALQEEGYHTLVASDGY--EALNLIHTYLLRETSPEQGEVCLIILDVMLPGINGLDLCRLI 97 Query: 68 RAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R VP++ IS S + + G DD + KP RE+LAR A+ RR ++ +A Sbjct: 98 RRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLARCRALLRRTRI--QQA 155 Query: 127 ETGPIRVFSD-GRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 P+ F D P+ ++GE L +E ++LE M + + + Q+ ++G Sbjct: 156 TLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRVWPREQLLDQVWG- 214 Query: 181 FDEAVEENVVESHISKLRKKLRN 203 D + V+ HI LR+K+ Sbjct: 215 PDFVGDSKTVDVHIRWLREKIET 237 >gi|323701215|ref|ZP_08112890.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533817|gb|EGB23681.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 229 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 5/140 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I ++ + + G DD + KP RE++AR+ A+ RR + + Sbjct: 69 IRRVSKVPIIMLTAKNEEVDRILGLEFGADDYMGKPFSPRELVARIKAVMRRAGTESKKE 128 Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 E +R+ R+ +V+ + L +E +L L G+ ++ Q+ ++G FD Sbjct: 129 EHILKFPGMRIDLISREIQVKEKPVTLTPKEFELLALLAKTAGRSYSREQLLEEVWG-FD 187 Query: 183 EAVEENVVESHISKLRKKLR 202 + V++H+++LR KLR Sbjct: 188 YYGDVRTVDTHVNRLRDKLR 207 >gi|312959878|ref|ZP_07774393.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311285825|gb|EFQ64391.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 254 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 21/182 (11%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE L L R +R+ S +P++ ++ + + G DD ++KP RE++AR+ Sbjct: 76 LMLPGEDGLSLCRWLRSESDIPILMLTARCEPTDRIIGLELGADDYMSKPFEPRELVARI 135 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165 I RR V ++R E F + R V G V PL E R+L ++ R Sbjct: 136 QTILRR--VRDDRTEQRANIRFDNWRLNSVLRQLVADNGLVVPLSNAEFRLL-WVFIERP 192 Query: 166 KRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYS 219 +RV ++ Q+ A G EA + + I L +LR KLG DP + + R GY Sbjct: 193 RRVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDPKAPQLIKTVRGEGYL 247 Query: 220 ID 221 D Sbjct: 248 FD 249 >gi|299534474|ref|ZP_07047807.1| transcriptional regulatory protein srrA [Lysinibacillus fusiformis ZC1] gi|298730102|gb|EFI70644.1| transcriptional regulatory protein srrA [Lysinibacillus fusiformis ZC1] Length = 233 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 3/145 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR VP+I ++ + + G DD + KP E+LAR+ A+ RR Sbjct: 66 IRKFWDVPIIMLTAKGEHADIVKGLNLGADDYILKPFDEEELLARIHAVLRRTISEEKVI 125 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + + + + Q + PL +E +L + + + ++ + A++G +D +E Sbjct: 126 NFEGLCLDRESFEVYFQHKAIPLTPKEFAMLALFLDYQNRAFSREHLIHAVWG-YDVTIE 184 Query: 187 ENVVESHISKLRKKLRNKLGFDPVD 211 + ++SH+ LR+KLR K GF P D Sbjct: 185 DRTIDSHVRNLREKLR-KSGF-PAD 207 >gi|295107369|emb|CBL04912.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 234 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 9/147 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R IRA S VP+I +S ++ G DD + KP E LARV+ R Sbjct: 71 ELVREIRARSDVPVIVVSARADTGDKVELLKLGADDYLAKPFDLDEPLARVSVQLRHASR 130 Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R+ +G +R + ++ R G+ L R E I+E L+ K K ++F A Sbjct: 131 GAGRS-SGTLRFKDWVLDAEARTLTAAGDPVRLTRLEFGIVEALVRRPKKVFTKRELFQA 189 Query: 177 IYGLFDEA-VEENVVESHISKLRKKLR 202 + +EA VEE V H+S +R KL+ Sbjct: 190 AWN--EEAFVEEKAVNVHVSNIRGKLK 214 >gi|291528837|emb|CBK94423.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 231 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 10/168 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E R +R VP++ +S L+ + G DD + KP + E++++V A+ RR + Sbjct: 60 IETCRRMRERHSVPILFLSAKSEELDKLEGLEVGGDDYMTKPFSNMELISKVKALIRRYR 119 Query: 121 V----SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 V S NR ET +++F++ E L +E IL+ LM N + Sbjct: 120 VYDSGSANRTNKDESIETDGLKLFTNRNKVEFNDNEIKLTGKEYEILKLLMKNPDRIYTI 179 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I+ ++ +N V HI LR KL G + ++ GY Sbjct: 180 EMIYEMVWDEVFTYNAKNTVMVHIKNLRNKLIKACGDACIHTEWGRGY 227 >gi|229159731|ref|ZP_04287740.1| Two-component response regulator [Bacillus cereus R309803] gi|228623756|gb|EEK80573.1| Two-component response regulator [Bacillus cereus R309803] Length = 225 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD + KP H E+ AR+ A+ RR Sbjct: 62 ETCKRIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYITKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N A+ + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNQHAQIQYHGILWDEAKHFVSVDNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K F P+D K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 220 >gi|297192015|ref|ZP_06909413.1| response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719538|gb|EDY63446.1| response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 223 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 92/206 (44%), Gaps = 15/206 (7%) Query: 23 GVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLI 76 G++ EG+ + L+ R D+ ++ L G G +V R A VP++ Sbjct: 19 GLTAEGYAVDVVHDGLEGLHRATEGVHDLVVLDIMLPGMNGYRVCAALRA--AGHDVPVL 76 Query: 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVF 134 ++ + D+G DD + KP + ++ARV A+ RR + G +RV Sbjct: 77 MLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRGRAGGSPVLTAGDLRVD 136 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 + R GE L +E +LE+L + V K +I ++ E + N+VE +I Sbjct: 137 TATRRVHAGGEEVALTAKEFAVLEHLATRTDEVVGKPEILEHVWDFAYEG-DPNIVEVYI 195 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSI 220 S LR+ KLG D + + R GY + Sbjct: 196 SALRR----KLGADRILTVRGAGYRL 217 >gi|254413738|ref|ZP_05027507.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196179335|gb|EDX74330.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 227 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 8/147 (5%) Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LEL + +R+ + P++ ++ +L + D+G DD + KP RE+LARV A+ RR Sbjct: 60 LELCQQLRSQGKTTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELLARVRALLRRS 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + A +RV S D E Q G + L +E ++L+Y M + G+ + +I+ Sbjct: 120 AATETNAPV-RLRVASLELDVENQLAYRNGRLIELSEKETQLLDYFMRHSGQLLTHGEIY 178 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++ +E NV+ + + LR+K+ Sbjct: 179 QQLWQ-DEEQPSSNVLAALVRLLRRKI 204 >gi|154684707|ref|YP_001419868.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154350558|gb|ABS72637.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 227 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 5/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LKVS 122 IR S P+I S S + ++G DD + KP ++A++ AI RR + Sbjct: 70 IREVSSAPIIFCSSRNSNMDIVMAINNGGDDYIQKPFDSHVLVAKLQAIIRRTYEYITAE 129 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ E+ + + + Q + L + E +IL+ LM N+GK V++ + ++ D Sbjct: 130 SHLIESNNVILNLNDAKIYFQDQSLELTKNEFKILKTLMENKGKVVSRDNLMRQLWN-DD 188 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V EN + +I++LR +L D + +K+ +GY I Sbjct: 189 IYVNENTLTVNINRLRNRLEGINVDDFILTKKGMGYII 226 >gi|94991797|ref|YP_599896.1| response regulator CsrR [Streptococcus pyogenes MGAS2096] gi|94545305|gb|ABF35352.1| Response regulator CsrR [Streptococcus pyogenes MGAS2096] Length = 228 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE +VV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETHVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|33595087|ref|NP_882730.1| transcriptional regulatory protein [Bordetella parapertussis 12822] gi|33565164|emb|CAE35960.1| transcriptional regulatory protein [Bordetella parapertussis] Length = 237 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/222 (22%), Positives = 99/222 (44%), Gaps = 28/222 (12%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L + G++ DG S G + ++W D+ ++ L + + L + Sbjct: 20 GLTELGHMVTVSGDGAS--GLENAMKDQW-------DIIILDRMLPNNVDGLSILSTLRA 70 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------L 119 + P++ +S ++ +D +G DD + KP E++AR+ A+ RR L Sbjct: 71 LGKKTPVLVLSALSAVDDRVDGLRAGGDDYLVKPFSFSELVARLDALVRRTRPDPDVKEL 130 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++++ +V GR +Q + F R+L YLM + + V +T + I+G Sbjct: 131 RIADLSVNVATQKVQRAGRPISLQPQEF-------RLLVYLMLHAHRIVTRTMLLETIWG 183 Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + NV++ +S+LR+K+ + + R GY++ Sbjct: 184 YSFDP--QSNVIDVQVSRLRRKIDASCATPLIHTIRGAGYTL 223 >gi|148547951|ref|YP_001268053.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148512009|gb|ABQ78869.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 219 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 103/221 (46%), Gaps = 11/221 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +L++D + + DDG +++ L+ S D+ ++ L G+G L Sbjct: 4 LLVEDAPGLGEAVREQIADDGHAVDWVQRLDHARNSVRSTPYDLILLDLMLPDGRG---L 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R RA V P+I ++ + + ++G DD + KP E+ ARVAA+ RR Sbjct: 61 DFLRQQRAAGDVTPVIILTAQDQISDRIAGLNAGADDYLVKPFDLFELSARVAAVGRRYS 120 Query: 121 VS-NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N + G ++V R + L RE + E + ++K+Q+ +Y Sbjct: 121 GNPNPQIRLGDLQVDMSARTVQRGSATVDLTAREWALFEAFVQRPSALLSKSQLEERLYA 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F +E N +E +IS+LRKKL +L +++ R +GY + Sbjct: 181 -FGAEIESNTIEVYISRLRKKLGREL----IETVRGMGYRL 216 >gi|333030607|ref|ZP_08458668.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] gi|332741204|gb|EGJ71686.1| two component transcriptional regulator, winged helix family [Bacteroides coprosuis DSM 18011] Length = 225 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 91/206 (44%), Gaps = 10/206 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI---GKGE 58 ++I+D + D + + E + +EE L+ + S I L G G Sbjct: 3 ILIIEDEKTLSDNMMRYLTANNYRCE--QAFTYEEGLEKISLYSYSCILLDLNLPDGDGM 60 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +LE R + S V I IS +L + +G DD + KP E+ R+ A+ RR Sbjct: 61 HLLEEIRNNKIDSGV--IIISARGALDDKIRGLMTGADDYLAKPFSLPELSVRIYALLRR 118 Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S N E+ I + G+ +V GE L + E +L +L+AN+ + ++K I Sbjct: 119 RLGTTSTNTLESNGIVIDLLGKTAKVNGESLNLTKTEYNLLLFLIANKNRVISKNAIAEH 178 Query: 177 IYG-LFDEAVEENVVESHISKLRKKL 201 + G + D N + +HI L+ KL Sbjct: 179 LSGDMADMFNSHNFIYTHIKNLKAKL 204 >gi|309783437|ref|ZP_07678143.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp. 5_7_47FAA] gi|308917836|gb|EFP63527.1| DNA-binding heavy metal response regulator CopR [Ralstonia sp. 5_7_47FAA] Length = 206 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 5/156 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRA 126 A VP++ ++ S+ + + G DD + KP E+LARV + RR VS++R Sbjct: 47 AEQAVPVLFLTARDSVADRVKGLEMGADDYLVKPFAFAELLARVRTLLRRGTGAVSSDRI 106 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 + + + R G+ PL +E +LE L+ RG+ + ++ I S ++ + FD Sbjct: 107 QVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVWDMNFDS-- 164 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NV++ I +LR K+ + + + R +GY ++ Sbjct: 165 DTNVIDVAIRRLRAKIDDHFEPKLIQTVRGMGYVLE 200 >gi|293607374|ref|ZP_06689713.1| transcriptional regulatory protein [Achromobacter piechaudii ATCC 43553] gi|292814218|gb|EFF73360.1| transcriptional regulatory protein [Achromobacter piechaudii ATCC 43553] Length = 222 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 59/235 (25%), Positives = 103/235 (43%), Gaps = 37/235 (15%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIE----AFLIGKG 57 +L++D ++ D A +DG ++ W+++ + ++ ++ A L+ G Sbjct: 3 ILLVEDDPMLGDALRAGLSNDGATVH---------WVRALSDAQLALVDHGFHAVLLDLG 53 Query: 58 ---EKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 L L + +R P++ I+ L + D+G DD + KP E+LAR+ Sbjct: 54 LPEGSGLTLLKALRGRFDTTPVLIITARDRLSERIQGLDAGADDYLVKPFQLDELLARLR 113 Query: 114 AIYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 A+ RR L+ + E V DGR+ L E L LM G Sbjct: 114 AVLRRSSNSVVSALRCRDVVLEPASRLVRQDGRE-------VSLSAHEYHTLLALMQRMG 166 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V++ Q+ A+YG +E N V +I +LR+KL + L ++++ LGY I Sbjct: 167 HTVSRDQLEVAVYG-SSGTIESNTVAVYIHQLRRKLGDGL----IETQHGLGYRI 216 >gi|91786449|ref|YP_547401.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91695674|gb|ABE42503.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 241 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 24/215 (11%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L +GY DG + G LE W A+ L+ G LE+ R RA Sbjct: 24 LQDEGYAVQHAADGNA--GLRELERGSW---------DALVLDLMLPGVDGLEICRRARA 72 Query: 70 HSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------AIYRRLKV 121 ++ P+I S S + + G DD + KP E++ARV A+ R ++ Sbjct: 73 MTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVRALLRRTDALARNARM 132 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E G +RV R+ +V+G+ L RE +L + + GK ++ + + ++G + Sbjct: 133 ESGLLELGNLRVDPVAREVQVEGKSVELTPREFDLLYFFARHPGKVFSRLNLLNQVWG-Y 191 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 E+ V +HI++LR K+ DP + +R L Sbjct: 192 QHDGYEHTVNTHINRLRMKVEA----DPTEPRRIL 222 >gi|29346400|ref|NP_809903.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253568200|ref|ZP_04845611.1| two-component system response regulator [Bacteroides sp. 1_1_6] gi|29338296|gb|AAO76097.1| two-component system response regulator [Bacteroides thetaiotaomicron VPI-5482] gi|251842273|gb|EES70353.1| two-component system response regulator [Bacteroides sp. 1_1_6] Length = 228 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 18/168 (10%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + IR ++ ++P++ ++ S LD FD+G DD + KP RE+ AR+ + +R Sbjct: 62 ELTKEIRKSNPRIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR-- 119 Query: 121 VSNNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 VS N E V++D R D E L +E +L Y++ N + +++ +I Sbjct: 120 VSGNVPELPQELVYADLRIDLQRKDVERNNVSIKLSPKEYNLLLYMVENAERVLSRVEIA 179 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKL-RNKLGFDP--VDSKRFLGY 218 ++ FD N ++ +I+ LRKK+ RN F+P + +K +G+ Sbjct: 180 EKVWNTHFDTGT--NFIDVYINYLRKKIDRN---FEPKLIHTKAGMGF 222 >gi|323484284|ref|ZP_08089652.1| hypothetical protein HMPREF9474_01403 [Clostridium symbiosum WAL-14163] gi|323402436|gb|EGA94766.1| hypothetical protein HMPREF9474_01403 [Clostridium symbiosum WAL-14163] Length = 209 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 9/127 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ R IR+ S+ P+I +S +D D+G DD + KP E+LAR+ +RRL Sbjct: 82 IDIIRKIRSWSKTPIIVLSARSEDTDKIDALDAGADDYLTKPFSVEELLARLRVTFRRLN 141 Query: 121 VSNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + A P VF++G + G+ L E ++L L N GK + T Sbjct: 142 DAGDSA-AAPASVFTNGEMRLDYAAGTVTMSGQELHLTPIEYKLLCLLAKNVGKVLTHTY 200 Query: 173 IFSAIYG 179 I I+G Sbjct: 201 ITKKIWG 207 >gi|311280253|ref|YP_003942484.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308749448|gb|ADO49200.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 240 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 9/149 (6%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IR ++ +P+I IS S + + G DD + KP E++ARV A++RR Sbjct: 64 LEICRRIRQMARYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELIARVKALFRRQ 123 Query: 120 KV--SNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + N R E G I DP ++GE+ L RE +L + + G+ ++ Sbjct: 124 EAMGQNIRLEGGMISCHGLAIDPLAREVRLRGELVDLTPREFDLLYWFARHPGEVFSRLS 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + ++G E E+ V +HI++LR K+ Sbjct: 184 LLDNVWGYQHEGY-EHTVNTHINRLRTKI 211 >gi|308180328|ref|YP_003924456.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045819|gb|ADN98362.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 175 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 4/163 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR H +P+I ++ + + D G DD + KP E+LARV I R Sbjct: 8 LEVLRRIRKHDTIPVIMMTARDYVSDKVAGLDGGADDYITKPFDTEELLARVRVILRHAD 67 Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N + + + R + + L +RE +L LM N + ++ + Sbjct: 68 QQQNLQAVYKFADLELNTKSRQVKRNHHLVQLTQREYELLLTLMKNAPITFTRDELLDQV 127 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G+ E + N+V+ +I LR K+ + + R +GY + Sbjct: 128 WGVDFEG-QPNIVDVYIRYLRHKIDTDTQRKLIHTVRGVGYCL 169 >gi|308175669|ref|YP_003922374.1| two-component response regulator YxdJ [Bacillus amyloliquefaciens DSM 7] gi|307608533|emb|CBI44904.1| two-component response regulator YxdJ [Bacillus amyloliquefaciens DSM 7] gi|328555650|gb|AEB26142.1| two-component response regulator YxdJ [Bacillus amyloliquefaciens TA208] Length = 229 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 19/200 (9%) Query: 39 QSSAREDVSAI-EAFLIGKGEKVL---ELP--------RIIRAHSQVPLIGISDYPSLQT 86 Q+ A D +A+ + FL K + VL LP R IR HS P+I IS Sbjct: 27 QTVAAADFTAVLDVFLQEKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISARSGEMD 86 Query: 87 TLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETGPIRVFSDGRDP 140 + ++G DD + KP + +LA++ + RR K E +++F + + Sbjct: 87 QVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVLEYAGVQLFVERFEL 146 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 Q E L ++E ++LE L+ K + ++ + D V++N + +I++LRKK Sbjct: 147 RFQDEKSELSKKESKLLEVLLERGEKVTGRDRLMEKTWDT-DIFVDDNTLNVYITRLRKK 205 Query: 201 LRNKLGFDPVDSKRFLGYSI 220 LR ++S R GY + Sbjct: 206 LRELNAPVSIESVRGEGYQL 225 >gi|264676967|ref|YP_003276873.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|299531538|ref|ZP_07044944.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|262207479|gb|ACY31577.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|298720501|gb|EFI61452.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 236 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 4/149 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETG 129 +VP+I ++ ++ SG DD + KPI E+ AR+AA+ RR + + + G Sbjct: 73 EVPVIFVTHRSEEADIVEGLASGADDFMIKPIRAGELRARIAALLRRAYPLTAQSVLDFG 132 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P R + E+ G+ + RE + L N+G+ +++ + ++G + V+ Sbjct: 133 PYRFLTTTNGIEMDGQPVEVTHREYTLALTLFQNQGRLLSRDHLREVVWG-HNAEVQSRS 191 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +++H+S+LR L + G P GY Sbjct: 192 LDTHVSRLRNLLNLRAG-QPYAISAVYGY 219 >gi|326203835|ref|ZP_08193697.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325985933|gb|EGD46767.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 224 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 9/158 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I +S + + ++G DD + KP + ++A++ AI RR A Sbjct: 67 IREISKVPVIFLSSRDTNMDIIMAVNTGADDYIAKPFSMQILIAKIQAILRR-TYDYTTA 125 Query: 127 ETGPIR----VFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + I + + G + G L + E +IL LM N+G+ V++ I ++ Sbjct: 126 DHDYIEHRALILNMGESSVIYGNSKSELTKNEMKILRLLMTNKGRIVSRESIMKLLWD-D 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 D+ V +N + +I++LR +L + LG D +++K+ GY Sbjct: 185 DQYVNDNTLTVNINRLRSRLSD-LGLEDYIETKKGQGY 221 >gi|251796647|ref|YP_003011378.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544273|gb|ACT01292.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 232 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 7/164 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ +A + VP+I ++ ++ + F+ G +D + KP E+LARV I R + Sbjct: 65 LRRLRQAGNPVPVILLTARDTVPDKVSGFEHGANDYITKPFAMEELLARVRNILRIFQQY 124 Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +E G + + R + V L RE +L YL+ N+ + ++ I S Sbjct: 125 PKESEGSDLIKVGDLTIELRTRKVYRKEIVIELTPREFELLVYLVENKNEEKSREDILSE 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D E N+V+ +I LR+KL + + R +GY I Sbjct: 185 VWG-YDFIGETNLVDVYIRYLRQKLDKGYRHKLIHTVRGVGYMI 227 >gi|166713358|ref|ZP_02244565.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 233 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 P++ ++ ++ + D G DD + KP RE AR + RR + ++ + G Sbjct: 73 TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNRGKASEVVQIGGF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + G LP RE R+ E L+ G+ V K +I + ++G FD+ N +E Sbjct: 133 VFDNAAHTLTLDGVPIELPNREYRLFEILIGRLGRVVGKDEIGNGLFG-FDDDAGPNAIE 191 Query: 192 SHISKLRKKL 201 ++ +LR+KL Sbjct: 192 LYVGRLRRKL 201 >gi|159900549|ref|YP_001546796.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893588|gb|ABX06668.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 248 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 10/155 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA S VP+I I+ + F+ G DD + KP E+ ARV AI RR++ +R Sbjct: 84 IRARSDVPIIIITARDGTDDVVHGFELGADDYITKPFRTAELQARVEAIIRRVEGYQHRK 143 Query: 127 ETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +R+ D + GE L E +L +L AN G+ + +F ++G + Sbjct: 144 ASPIVRIGDLEIDEPRHKVLLAGEDVNLTPMEFELLYFLAANSGQVFDREVLFREVWG-Y 202 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + + N+V+ + +LR+K+ + P +R L Sbjct: 203 EYVGQTNLVDVCVRRLREKIEEQ----PSKPRRIL 233 >gi|15804705|ref|NP_290746.1| DNA-binding transcriptional regulator BasR [Escherichia coli O157:H7 EDL933] gi|15834349|ref|NP_313122.1| DNA-binding transcriptional regulator BasR [Escherichia coli O157:H7 str. Sakai] gi|110644471|ref|YP_672201.1| DNA-binding transcriptional regulator BasR [Escherichia coli 536] gi|157158920|ref|YP_001465612.1| DNA-binding transcriptional regulator BasR [Escherichia coli E24377A] gi|157163578|ref|YP_001460896.1| DNA-binding transcriptional regulator BasR [Escherichia coli HS] gi|168748031|ref|ZP_02773053.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4113] gi|168755294|ref|ZP_02780301.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4401] gi|168760973|ref|ZP_02785980.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4501] gi|168766383|ref|ZP_02791390.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4486] gi|168774482|ref|ZP_02799489.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4196] gi|168780536|ref|ZP_02805543.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4076] gi|168784741|ref|ZP_02809748.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC869] gi|168798215|ref|ZP_02823222.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC508] gi|170021889|ref|YP_001726843.1| DNA-binding transcriptional regulator BasR [Escherichia coli ATCC 8739] gi|170679832|ref|YP_001746506.1| DNA-binding transcriptional regulator BasR [Escherichia coli SMS-3-5] gi|188494489|ref|ZP_03001759.1| DNA-binding response regulator BasR [Escherichia coli 53638] gi|191165619|ref|ZP_03027459.1| DNA-binding response regulator BasR [Escherichia coli B7A] gi|191173347|ref|ZP_03034876.1| DNA-binding response regulator BasR [Escherichia coli F11] gi|193063133|ref|ZP_03044225.1| DNA-binding response regulator BasR [Escherichia coli E22] gi|193067895|ref|ZP_03048861.1| DNA-binding response regulator BasR [Escherichia coli E110019] gi|194426834|ref|ZP_03059387.1| DNA-binding response regulator BasR [Escherichia coli B171] gi|194437292|ref|ZP_03069390.1| DNA-binding response regulator BasR [Escherichia coli 101-1] gi|195935902|ref|ZP_03081284.1| DNA-binding transcriptional regulator BasR [Escherichia coli O157:H7 str. EC4024] gi|208808477|ref|ZP_03250814.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4206] gi|208813842|ref|ZP_03255171.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4045] gi|208820064|ref|ZP_03260384.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4042] gi|209397598|ref|YP_002273657.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4115] gi|217325375|ref|ZP_03441459.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. TW14588] gi|218556665|ref|YP_002389579.1| DNA-binding transcriptional regulator BasR [Escherichia coli IAI1] gi|218697815|ref|YP_002405482.1| DNA-binding transcriptional regulator BasR [Escherichia coli 55989] gi|218707728|ref|YP_002415247.1| DNA-binding transcriptional regulator BasR [Escherichia coli UMN026] gi|253775258|ref|YP_003038089.1| DNA-binding transcriptional regulator BasR [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037123|ref|ZP_04871200.1| two component transcriptional regulator [Escherichia sp. 1_1_43] gi|254796135|ref|YP_003080972.1| DNA-binding transcriptional regulator BasR [Escherichia coli O157:H7 str. TW14359] gi|256024989|ref|ZP_05438854.1| DNA-binding transcriptional regulator BasR [Escherichia sp. 4_1_40B] gi|260846908|ref|YP_003224686.1| DNA-binding response regulator BasR in two-component regulatory system with BasS [Escherichia coli O103:H2 str. 12009] gi|260858217|ref|YP_003232108.1| DNA-binding response regulator BasR in two-component regulatory system with BasS [Escherichia coli O26:H11 str. 11368] gi|260870866|ref|YP_003237268.1| DNA-binding response regulator BasR in two-component regulatory system with BasS [Escherichia coli O111:H- str. 11128] gi|261225234|ref|ZP_05939515.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli O157:H7 str. FRIK2000] gi|261255514|ref|ZP_05948047.1| DNA-binding response regulator BasR in two-component regulatory system with BasS [Escherichia coli O157:H7 str. FRIK966] gi|291285529|ref|YP_003502347.1| DNA-binding response regulator BasR [Escherichia coli O55:H7 str. CB9615] gi|293402745|ref|ZP_06646842.1| DNA-binding transcriptional regulator BasR [Escherichia coli FVEC1412] gi|293407838|ref|ZP_06651678.1| DNA-binding transcriptional regulator BasR [Escherichia coli B354] gi|293417619|ref|ZP_06660241.1| two-component system [Escherichia coli B185] gi|293476410|ref|ZP_06664818.1| two-component system [Escherichia coli B088] gi|298378274|ref|ZP_06988158.1| two-component system [Escherichia coli FVEC1302] gi|300818032|ref|ZP_07098245.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300821199|ref|ZP_07101347.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300897526|ref|ZP_07115941.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300906439|ref|ZP_07124136.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300924382|ref|ZP_07140357.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300930477|ref|ZP_07145878.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300947736|ref|ZP_07161900.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300954156|ref|ZP_07166622.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300994998|ref|ZP_07181022.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|301017387|ref|ZP_07182140.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|301021686|ref|ZP_07185674.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|301302808|ref|ZP_07208937.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|301330508|ref|ZP_07223121.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|301644716|ref|ZP_07244694.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|307140806|ref|ZP_07500162.1| DNA-binding transcriptional regulator BasR [Escherichia coli H736] gi|307312050|ref|ZP_07591687.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|309796881|ref|ZP_07691283.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|312974084|ref|ZP_07788255.1| transcriptional regulatory protein basR/pmrA [Escherichia coli 1827-70] gi|331644860|ref|ZP_08345977.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli H736] gi|331655943|ref|ZP_08356931.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli M718] gi|331665779|ref|ZP_08366673.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli TA143] gi|331670976|ref|ZP_08371810.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli TA271] gi|331680240|ref|ZP_08380899.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli H591] gi|331681048|ref|ZP_08381685.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli H299] gi|12519083|gb|AAG59312.1|AE005644_6 transcriptional regulatory protein 2-component regulatory system member [Escherichia coli O157:H7 str. EDL933] gi|13364572|dbj|BAB38518.1| 2-component regulatory system regulatory protein BasR [Escherichia coli O157:H7 str. Sakai] gi|56540527|gb|AAV92717.1| PmrA [Escherichia coli] gi|56540529|gb|AAV92718.1| PmrA [Escherichia coli] gi|56540531|gb|AAV92719.1| PmrA [Escherichia coli] gi|56540533|gb|AAV92720.1| PmrA [Escherichia coli] gi|56540535|gb|AAV92721.1| PmrA [Escherichia coli] gi|56540537|gb|AAV92722.1| PmrA [Escherichia coli] gi|56540539|gb|AAV92723.1| PmrA [Escherichia coli] gi|56540541|gb|AAV92724.1| PmrA [Escherichia coli] gi|56540543|gb|AAV92725.1| PmrA [Escherichia coli] gi|56540545|gb|AAV92726.1| PmrA [Escherichia coli] gi|56540547|gb|AAV92727.1| PmrA [Escherichia coli] gi|56540549|gb|AAV92728.1| PmrA [Escherichia coli] gi|56540551|gb|AAV92729.1| PmrA [Escherichia coli] gi|56540553|gb|AAV92730.1| PmrA [Escherichia coli] gi|56540555|gb|AAV92731.1| PmrA [Escherichia coli] gi|56540557|gb|AAV92732.1| PmrA [Escherichia coli] gi|56540559|gb|AAV92733.1| PmrA [Escherichia coli] gi|56540561|gb|AAV92734.1| PmrA [Escherichia coli] gi|56540565|gb|AAV92736.1| PmrA [Escherichia coli] gi|56540567|gb|AAV92737.1| PmrA [Escherichia coli] gi|56540569|gb|AAV92738.1| PmrA [Escherichia coli] gi|56540571|gb|AAV92739.1| PmrA [Escherichia coli] gi|56540573|gb|AAV92740.1| PmrA [Escherichia coli] gi|56540575|gb|AAV92741.1| PmrA [Escherichia coli] gi|56540579|gb|AAV92743.1| PmrA [Escherichia coli] gi|56540581|gb|AAV92744.1| PmrA [Escherichia coli] gi|56540583|gb|AAV92745.1| PmrA [Escherichia coli] gi|56540589|gb|AAV92748.1| PmrA [Escherichia coli] gi|56540597|gb|AAV92752.1| PmrA [Escherichia coli] gi|56540599|gb|AAV92753.1| PmrA [Escherichia coli] gi|56540603|gb|AAV92755.1| PmrA [Escherichia coli] gi|56540605|gb|AAV92756.1| PmrA [Escherichia coli] gi|56540607|gb|AAV92757.1| PmrA [Escherichia coli] gi|56540643|gb|AAV92775.1| PmrA [Escherichia coli] gi|56540645|gb|AAV92776.1| PmrA [Escherichia coli] gi|56540647|gb|AAV92777.1| PmrA [Escherichia coli] gi|56540649|gb|AAV92778.1| PmrA [Escherichia coli] gi|56540651|gb|AAV92779.1| PmrA [Escherichia coli] gi|110346063|gb|ABG72300.1| transcriptional regulatory protein BasR/PmrA [Escherichia coli 536] gi|157069258|gb|ABV08513.1| DNA-binding response regulator BasR [Escherichia coli HS] gi|157080950|gb|ABV20658.1| DNA-binding response regulator BasR [Escherichia coli E24377A] gi|169756817|gb|ACA79516.1| two component transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|170517550|gb|ACB15728.1| DNA-binding response regulator BasR [Escherichia coli SMS-3-5] gi|187769816|gb|EDU33660.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4196] gi|188017496|gb|EDU55618.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4113] gi|188489688|gb|EDU64791.1| DNA-binding response regulator BasR [Escherichia coli 53638] gi|189001669|gb|EDU70655.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4076] gi|189357501|gb|EDU75920.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4401] gi|189364240|gb|EDU82659.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4486] gi|189368662|gb|EDU87078.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4501] gi|189374840|gb|EDU93256.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC869] gi|189379213|gb|EDU97629.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC508] gi|190904314|gb|EDV64023.1| DNA-binding response regulator BasR [Escherichia coli B7A] gi|190906323|gb|EDV65933.1| DNA-binding response regulator BasR [Escherichia coli F11] gi|192931392|gb|EDV83994.1| DNA-binding response regulator BasR [Escherichia coli E22] gi|192958870|gb|EDV89307.1| DNA-binding response regulator BasR [Escherichia coli E110019] gi|194415170|gb|EDX31439.1| DNA-binding response regulator BasR [Escherichia coli B171] gi|194423848|gb|EDX39837.1| DNA-binding response regulator BasR [Escherichia coli 101-1] gi|208728278|gb|EDZ77879.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4206] gi|208735119|gb|EDZ83806.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4045] gi|208740187|gb|EDZ87869.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4042] gi|209158998|gb|ACI36431.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. EC4115] gi|209750778|gb|ACI73696.1| 2-component regulatory system regulatory protein BasR [Escherichia coli] gi|209750780|gb|ACI73697.1| 2-component regulatory system regulatory protein BasR [Escherichia coli] gi|209750782|gb|ACI73698.1| 2-component regulatory system regulatory protein BasR [Escherichia coli] gi|209750784|gb|ACI73699.1| 2-component regulatory system regulatory protein BasR [Escherichia coli] gi|209750786|gb|ACI73700.1| 2-component regulatory system regulatory protein BasR [Escherichia coli] gi|217321596|gb|EEC30020.1| DNA-binding response regulator BasR [Escherichia coli O157:H7 str. TW14588] gi|218354547|emb|CAV01439.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli 55989] gi|218363434|emb|CAR01088.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli IAI1] gi|218434825|emb|CAR15760.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli UMN026] gi|226840229|gb|EEH72231.1| two component transcriptional regulator [Escherichia sp. 1_1_43] gi|242379640|emb|CAQ34462.1| BasR transcriptional regulator [Escherichia coli BL21(DE3)] gi|253326302|gb|ACT30904.1| two component transcriptional regulator, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253980104|gb|ACT45774.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli BL21(DE3)] gi|254595535|gb|ACT74896.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli O157:H7 str. TW14359] gi|257756866|dbj|BAI28368.1| DNA-binding response regulator BasR in two-component regulatory system with BasS [Escherichia coli O26:H11 str. 11368] gi|257762055|dbj|BAI33552.1| DNA-binding response regulator BasR in two-component regulatory system with BasS [Escherichia coli O103:H2 str. 12009] gi|257767222|dbj|BAI38717.1| DNA-binding response regulator BasR in two-component regulatory system with BasS [Escherichia coli O111:H- str. 11128] gi|290765402|gb|ADD59363.1| DNA-binding response regulator BasR [Escherichia coli O55:H7 str. CB9615] gi|291320863|gb|EFE60305.1| two-component system [Escherichia coli B088] gi|291429660|gb|EFF02674.1| DNA-binding transcriptional regulator BasR [Escherichia coli FVEC1412] gi|291430337|gb|EFF03335.1| two-component system [Escherichia coli B185] gi|291472089|gb|EFF14571.1| DNA-binding transcriptional regulator BasR [Escherichia coli B354] gi|298280608|gb|EFI22109.1| two-component system [Escherichia coli FVEC1302] gi|299882731|gb|EFI90942.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|300304895|gb|EFJ59415.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300318845|gb|EFJ68629.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300358747|gb|EFJ74617.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300397919|gb|EFJ81457.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300401775|gb|EFJ85313.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300419416|gb|EFK02727.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300452682|gb|EFK16302.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300461640|gb|EFK25133.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300526088|gb|EFK47157.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300529442|gb|EFK50504.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300842028|gb|EFK69788.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|300843533|gb|EFK71293.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|301076970|gb|EFK91776.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|306907857|gb|EFN38358.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|308119522|gb|EFO56784.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|309704580|emb|CBJ03930.1| two-component response regulator [Escherichia coli ETEC H10407] gi|310331618|gb|EFP98874.1| transcriptional regulatory protein basR/pmrA [Escherichia coli 1827-70] gi|315063430|gb|ADT77757.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli W] gi|315253794|gb|EFU33762.1| response regulator receiver domain protein [Escherichia coli MS 85-1] gi|315617492|gb|EFU98098.1| transcriptional regulatory protein basR/pmrA [Escherichia coli 3431] gi|320175437|gb|EFW50537.1| Transcriptional regulatory protein basR/pmrA [Shigella dysenteriae CDC 74-1112] gi|320190755|gb|EFW65405.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli O157:H7 str. EC1212] gi|320200754|gb|EFW75340.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli EC4100B] gi|320638872|gb|EFX08518.1| DNA-binding transcriptional regulator BasR [Escherichia coli O157:H7 str. G5101] gi|320644241|gb|EFX13306.1| DNA-binding transcriptional regulator BasR [Escherichia coli O157:H- str. 493-89] gi|320649559|gb|EFX18083.1| DNA-binding transcriptional regulator BasR [Escherichia coli O157:H- str. H 2687] gi|320654955|gb|EFX22916.1| DNA-binding transcriptional regulator BasR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660462|gb|EFX27923.1| DNA-binding transcriptional regulator BasR [Escherichia coli O55:H7 str. USDA 5905] gi|320665732|gb|EFX32769.1| DNA-binding transcriptional regulator BasR [Escherichia coli O157:H7 str. LSU-61] gi|323155841|gb|EFZ42009.1| transcriptional regulatory protein basR/pmrA [Escherichia coli EPECa14] gi|323162098|gb|EFZ47967.1| transcriptional regulatory protein basR/pmrA [Escherichia coli E128010] gi|323171538|gb|EFZ57184.1| transcriptional regulatory protein basR/pmrA [Escherichia coli LT-68] gi|323176002|gb|EFZ61594.1| transcriptional regulatory protein basR/pmrA [Escherichia coli 1180] gi|323182218|gb|EFZ67628.1| transcriptional regulatory protein basR/pmrA [Escherichia coli 1357] gi|323935427|gb|EGB31765.1| response regulator receiver domain-containing protein [Escherichia coli E1520] gi|323940032|gb|EGB36226.1| response regulator receiver domain-containing protein [Escherichia coli E482] gi|323946107|gb|EGB42142.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|323960387|gb|EGB56024.1| response regulator receiver domain-containing protein [Escherichia coli H489] gi|323969906|gb|EGB65184.1| response regulator receiver domain-containing protein [Escherichia coli TA007] gi|324015821|gb|EGB85040.1| response regulator receiver domain protein [Escherichia coli MS 60-1] gi|324118681|gb|EGC12573.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|326346590|gb|EGD70324.1| Transcriptional regulatory protein basR/pmrA [Escherichia coli O157:H7 str. 1044] gi|331035835|gb|EGI08073.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli H736] gi|331046297|gb|EGI18387.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli M718] gi|331056830|gb|EGI28824.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli TA143] gi|331061890|gb|EGI33815.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli TA271] gi|331071703|gb|EGI43039.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli H591] gi|331081269|gb|EGI52430.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli H299] gi|332083467|gb|EGI88691.1| transcriptional regulatory protein basR/pmrA [Shigella boydii 5216-82] gi|332346120|gb|AEE59454.1| transcriptional regulatory protein BasR [Escherichia coli UMNK88] Length = 222 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 15/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G + E QS S + L E L Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60 Query: 62 E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L RI + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 NN+ E+ G + + R + GE L +E +L LM G V + +++ Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 IY +D N +E HI LR+K+G + + R GY + N Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219 >gi|260438704|ref|ZP_05792520.1| DNA-binding response regulator VncR [Butyrivibrio crossotus DSM 2876] gi|292808906|gb|EFF68111.1| DNA-binding response regulator VncR [Butyrivibrio crossotus DSM 2876] Length = 217 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 82/161 (50%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S +P++ ++ + + +D F + VD + KP + AR+ ++ ++ Sbjct: 59 LEVLKEIRKKSFLPILILTAFSDEEYKIDAFTNLVDGYMEKPFSLPVLKARIDSLIKKNY 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E + V + ++ GE + +E +L+ L+ N G+ + + QI ++ Sbjct: 119 GHLEMFEYKNLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKD 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +EA + V++ +I +LRKKL+ D + + R +GY ++ Sbjct: 179 SEEAPYDRVIDVYIKELRKKLQ----LDCITTIRNVGYKLE 215 >gi|251788826|ref|YP_003003547.1| DNA-binding transcriptional regulator BaeR [Dickeya zeae Ech1591] gi|247537447|gb|ACT06068.1| two component transcriptional regulator, winged helix family [Dickeya zeae Ech1591] Length = 243 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 7/172 (4%) Query: 33 EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFD 92 E E W++ I L+ G L L R IR S VP+I ++ L + Sbjct: 48 EVEPWVREHP---CQLILLDLMLPGRDGLTLCRAIRGFSNVPIIMVTARSDEIDRLLGLE 104 Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGR-DPEVQGEVFPL 149 G DD + KP RE++ARV + RR + + + P + R G L Sbjct: 105 IGADDYICKPYSPREVVARVKTLLRRCRWQHEPLPNDALPALLIDQNRYQASYLGRHLEL 164 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E R+L+ L A G+ ++ Q+ +Y + V + ++SHI LR+KL Sbjct: 165 TPAEFRLLKTLSAEPGRVFSREQLLDHLYDDY-RVVTDRTIDSHIKNLRRKL 215 >gi|228908282|ref|ZP_04072127.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200] gi|228939674|ref|ZP_04102256.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228965493|ref|ZP_04126579.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str. T04001] gi|228972536|ref|ZP_04133142.1| Sensor histidine kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979144|ref|ZP_04139489.1| Sensor histidine kinase [Bacillus thuringiensis Bt407] gi|228780577|gb|EEM28799.1| Sensor histidine kinase [Bacillus thuringiensis Bt407] gi|228787173|gb|EEM35146.1| Sensor histidine kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794223|gb|EEM41741.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str. T04001] gi|228820012|gb|EEM66055.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228851323|gb|EEM96132.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200] gi|326940268|gb|AEA16164.1| two-component response regulator vanR [Bacillus thuringiensis serovar chinensis CT-43] Length = 231 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 13/207 (6%) Query: 27 EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+N + + +E LQ + +V + ++ LE+ + +R ++ VP++ +S Sbjct: 25 EGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135 + +G DD + KP + E++ARV A+ RR N + E G IR+ S Sbjct: 85 DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSQKNEDGIIRIRSVEIHK 144 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 +V GE L E IL L +N G+ + +IF ++ D V HIS Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203 Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221 LR KL + G + + +GY I+ Sbjct: 204 NLRDKLETVMNGEKLIHTVWGVGYKIE 230 >gi|227496351|ref|ZP_03926642.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226834127|gb|EEH66510.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 248 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 7/134 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ ++ + + G DD V KP E++AR+ AI RR + + + G +R Sbjct: 86 TPILFLTARDDMSDKVQGLTVGGDDYVTKPFGLEEVVARIRAILRRTHATQDEND-GIVR 144 Query: 133 VFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 V D + G L E ++L YLM N G+ V+K QI ++ +D + Sbjct: 145 VADLVLDEDAHEVHRAGVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDHVWE-YDWNGDA 203 Query: 188 NVVESHISKLRKKL 201 +VES+IS LR+K+ Sbjct: 204 AIVESYISYLRRKI 217 >gi|213618641|ref|ZP_03372467.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 194 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L R IR S +P++ ++ L + G DD + KP RE++ARV I RR K Sbjct: 24 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 83 Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + AE+ P+ + G+ L E R+L+ L GK ++ Q+ + Sbjct: 84 PQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNH 142 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203 +Y + V + ++SHI LR+KL + Sbjct: 143 LYDDY-RVVTDRTIDSHIKNLRRKLES 168 >gi|182412432|ref|YP_001817498.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177839646|gb|ACB73898.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 269 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 104/240 (43%), Gaps = 34/240 (14%) Query: 2 FVLIDDRALVKDGYIALFGDDG--VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59 +L+ DRA + L ++G V + F L VS I A G+ Sbjct: 30 ILLVSDRAPRPESLAGLLVENGYLVFHLPLAADPFHPVLGVRPSLIVSEIPATFRGRDSW 89 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + +L R + P++ +S S + G DD + +P H E+LARV A+ RR Sbjct: 90 LGQL---RRCGIRTPILLVSPTHSTADRIQGLQHGADDCLGQPFHPAELLARVQALLRR- 145 Query: 120 KVSNNRAETGPIRVFSDGR--------------DPEVQGEVFPLPRRERRILEYLMANRG 165 TGP+ + + R DP Q L R E L+ L+ RG Sbjct: 146 -------STGPLPLTAWVRFGPVVVDLRRMTTIDPRGQSR---LSRIECAFLDLLVHARG 195 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223 + V++ ++ AI+G + + V++H+ +LR+K+ + G +P + S +GY +++ Sbjct: 196 RAVSRERLLRAIWGNVNPPASRS-VDTHVWRLRRKIGDT-GHEPHWIKSVPGVGYQLEYT 253 >gi|330977884|gb|EGH77787.1| two component transcriptional regulator [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 220 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 99/219 (45%), Gaps = 24/219 (10%) Query: 8 RALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66 +AL ++GY + DG S L S F+ + +S E L R+ Sbjct: 18 QALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPTLSGFEV-----------LRRL 66 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 + S +P++ ++ + + + DSG DD + KP E+ AR+ A+ RR S RA Sbjct: 67 RHSGSTLPVMILTARDATEDRIIGLDSGADDYLVKPFDVSELKARLRALLRR---SAGRA 123 Query: 127 ----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 E IR+ + L +E ++L L++ G+ + + ++ +YG ++ Sbjct: 124 KVLIEHNGIRLDPSTQQVSYHDAAVALTPKEYQLLYELLSPPGRVMTRERLMQLLYG-WN 182 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E N +E HI LRKK + L + + R +GY ++ Sbjct: 183 EEAESNTLEVHIHHLRKKFSSTL----IRTIRGVGYLVE 217 >gi|319893721|ref|YP_004150596.1| Two-component response regulator SA14-24 [Staphylococcus pseudintermedius HKU10-03] gi|317163417|gb|ADV06960.1| Two-component response regulator SA14-24 [Staphylococcus pseudintermedius HKU10-03] gi|323463221|gb|ADX75374.1| two-component response regulator VicR [Staphylococcus pseudintermedius ED99] Length = 233 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 10/171 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ +E+ R +R ++P+I ++ S + + G DD V KP RE++ARV A Sbjct: 58 GQDGMEVCREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 117 RRL--------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 RR + N I ++ D + +GE L RE + YL + G+ + Sbjct: 118 RRHYTQPSQENHMQTNEITIKDIVIYPDAYSIKKRGEDIDLTHREFELFHYLSKHMGQVM 177 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 + + ++G +D + V+ I +LR+K+ + D + ++R +GY Sbjct: 178 TREHLLQTVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPDYIVTRRGVGY 227 >gi|315613222|ref|ZP_07888132.1| response regulator [Streptococcus sanguinis ATCC 49296] gi|315314784|gb|EFU62826.1| response regulator [Streptococcus sanguinis ATCC 49296] Length = 252 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 12/154 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP+I +S S + + G DD V KP +RE+ ARV A+ RR Sbjct: 78 LEVAKSIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTD 137 Query: 121 -VSNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 VS + E+ G + + D + GE L RE +L +L ++ G+ + Sbjct: 138 LVSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVIT 197 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ I +LR+K+ + Sbjct: 198 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 230 >gi|299536972|ref|ZP_07050277.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298727552|gb|EFI68122.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 230 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 11/143 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +P+I +S + G DD V KP H E+LARV + RR + Sbjct: 69 IREERNIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLRRYVQLGTYS 128 Query: 127 ETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E G +V DG ++ ++GE L E +I E LM N G+ + +I+ ++ Sbjct: 129 E-GATKVEIDGLVLDEEAKEVVLEGEPVRLTPIEYKITELLMKNAGRVFSIREIYERVWN 187 Query: 180 LFDEAVE-ENVVESHISKLRKKL 201 +EA EN+V HI K+R+K+ Sbjct: 188 --EEAYNAENIVAVHIRKIREKI 208 >gi|290957320|ref|YP_003488502.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260646846|emb|CBG69943.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 222 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 20/218 (9%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66 + L +GY DGV EG + S D+ ++ L G G +V R Sbjct: 18 KGLTAEGYAVDVVHDGV--EGLHR-------ASEGAYDLVILDIMLPGMNGYRVCAALRA 68 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 A VP++ ++ + D+G DD + KP + ++ARV A+ RR S + Sbjct: 69 --AGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRHASGGAS 126 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E G +R+ + R + + L +E +LE L+ G+ V+K +I ++ F Sbjct: 127 PVHEVGELRLDTAARRVFLTEDEISLTTKEFSVLEQLVLRAGEVVSKAEILEHVWD-FAY 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + N+VE +IS LR+KL L + + R GY ++ Sbjct: 186 DGDPNIVEVYISTLRRKLGPTL----IKTVRGAGYRLE 219 >gi|227533256|ref|ZP_03963305.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189106|gb|EEI69173.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 232 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 4/155 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA + VP+I ++ + + + +G DD V KP E+ AR+ A +RR RA Sbjct: 75 IRAITSVPIIFLTARVTDEDKVRGLGAGGDDYVTKPFSLAELGARIKAHFRRESQPQKRA 134 Query: 127 ETGPI-RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 ++ D R +V +V L +++ +++E L N G+ ++ Q++ I+G +D Sbjct: 135 RMAIFDQILIDYRAKQVSIGDQVLSLEKKQYQLVELLSLNPGQVFSREQLYEKIWG-YDA 193 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ V+ HI ++R P+++ +GY Sbjct: 194 LGDDRVITEHIRRIRLLFDRYQVTSPIETVWGVGY 228 >gi|213021449|ref|ZP_03335896.1| DNA-binding transcriptional regulator PhoP [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 228 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 4/178 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ D G ++ ++ + D++ ++ L E L Sbjct: 7 LVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEHLPDIAIVDLGL--PDEDGLS 64 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R R+ +P++ ++ Q ++ SG DD V KP H E++AR+ A+ RR Sbjct: 65 LIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTKPFHIEEVMARMQALMRRNSG 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++ P +V R+ V EV L E I+E L+ N GK V+K + +Y Sbjct: 125 LASQVINISPFQVDLSRRELSVNEEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLY 182 >gi|290510605|ref|ZP_06549975.1| DNA-binding response regulator [Klebsiella sp. 1_1_55] gi|289777321|gb|EFD85319.1| DNA-binding response regulator [Klebsiella sp. 1_1_55] Length = 238 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 9/157 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L+ G LE+ R IR ++ +P+I IS S + + G DD + KP E++AR Sbjct: 54 LMLPGVDGLEICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIAR 113 Query: 112 VAAIYRR-------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 V A++RR L + R + + R+ +++GEV L RE +L Y + Sbjct: 114 VKALFRRQEAMGQNLLMDAGRLSCHGLSIDPLSREVKLRGEVVDLTPREFDLLYYFARHP 173 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 G+ ++ + ++G E E+ V +HI++LR K+ Sbjct: 174 GEVFSRLALLEQVWGYQHEGY-EHTVNTHINRLRSKI 209 >gi|271501522|ref|YP_003334548.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270345077|gb|ACZ77842.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 243 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 7/172 (4%) Query: 33 EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFD 92 E E W++ I L+ G L L R IR S VP+I ++ L + Sbjct: 48 EVEPWVREHP---CQLILLDLMLPGRDGLTLCRAIRGFSNVPIIMVTARTEEIDRLLGLE 104 Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGR-DPEVQGEVFPL 149 G DD + KP RE++ARV + RR + + + P + R G L Sbjct: 105 IGADDYICKPYSPREVVARVKTLLRRCRWQHEPLPNDVLPALLIDQNRYQASYLGRHLEL 164 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E R+L+ L A G+ ++ Q+ +Y + V + ++SHI LR+KL Sbjct: 165 TPAEFRLLKTLSAEPGRVFSREQLLDHLYDDY-RVVTDRTIDSHIKNLRRKL 215 >gi|154688139|ref|YP_001423300.1| YycF [Bacillus amyloliquefaciens FZB42] gi|308175750|ref|YP_003922455.1| transcriptional regulatory protein WalR [Bacillus amyloliquefaciens DSM 7] gi|154353990|gb|ABS76069.1| YycF [Bacillus amyloliquefaciens FZB42] gi|307608614|emb|CBI44985.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens DSM 7] gi|328914110|gb|AEB65706.1| Transcriptional regulatory protein yycF [Bacillus amyloliquefaciens LL3] Length = 236 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 21/220 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY D + +G ++E E LQ D+ ++ L K +E+ R +R Sbjct: 23 LRKEGY-----DVHCAYDGNEAVEMVEELQP----DLILLDIMLPNKDG--VEVCREVRK 71 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV------- 121 +P+I ++ S + + G DD V KP RE+LARV A RR L V Sbjct: 72 KYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLTVAPAEEES 131 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++N G + +F D + E L RE +L YL + G+ + + + ++G + Sbjct: 132 ASNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHLLQTVWG-Y 190 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 D + V+ + +LR+K+ N + + ++R +GY + Sbjct: 191 DYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230 >gi|189438905|ref|YP_001953986.1| response regulator [Bifidobacterium longum DJO10A] gi|296454575|ref|YP_003661718.1| winged helix family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|32700051|gb|AAP86676.1| response regulator [Bifidobacterium longum subsp. infantis] gi|189427340|gb|ACD97488.1| Response regulator [Bifidobacterium longum DJO10A] gi|296184006|gb|ADH00888.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. longum JDM301] Length = 240 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 36/218 (16%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIGISD 80 LE E + + + + A+E F I K + +L E+ R IRA S VP+I ++ Sbjct: 21 LENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDGTEVARRIRATSNVPIIMLTA 80 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---------------VSNNR 125 + ++G DD V KP E+LAR+ A +R K + N Sbjct: 81 KSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAKPAAEDGATGGASGGNANVNH 140 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E GPI + G+ L E +L L A G+ ++++ + ++G ++ + Sbjct: 141 LERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGEAISRSSLLKNVWG-YENSG 199 Query: 186 EENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 + +V H+ +LR K+ + DP V + R +GY Sbjct: 200 DTRLVNVHVQRLRAKVED----DPENPQIVQTVRGIGY 233 >gi|17351928|gb|AAL38200.1|AF319444_1 putative response regulator RR26 [Listeria monocytogenes] Length = 237 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 91/189 (48%), Gaps = 16/189 (8%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 + +G +LE E +Q D+ ++ L G+ +E+ R +R +P+I ++ S Sbjct: 32 CAYDGDEALELVEEVQP----DLILLDIMLPGRDG--IEVCREVRKKYDMPIIMVTAKDS 85 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAET--------GPIRVF 134 + + G DD V KP +RE++ARV A RR +VS++ AE G + + Sbjct: 86 EIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQVSSSTAEEEENSELEIGSLIIH 145 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D +GE L RE +L YL + G+ + + + ++G +D + V+ + Sbjct: 146 PDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREHLLQTVWG-YDYFGDVRTVDVTV 204 Query: 195 SKLRKKLRN 203 +LR+K+ + Sbjct: 205 RRLREKIED 213 >gi|320638620|gb|EFX08325.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 str. G5101] Length = 229 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ V + +G + E Sbjct: 8 LVEDEQGIADTLLYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 + + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ + Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDIV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|307294693|ref|ZP_07574535.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] gi|306879167|gb|EFN10385.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] Length = 235 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 22/174 (12%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LEL R +R S +P+I ++ G DD ++KP R ++AR+ AI RR + Sbjct: 62 LELLRRLREKSHMPVIFLTSKADELDEALGLAMGADDYISKPFSQRLLIARIRAILRRAE 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER---------------RILEYLMANRG 165 VS +A+ P + +P V+G + P R R ILE L A G Sbjct: 122 VS--KADASPDEPVA---EPIVRGRLEMDPARHRVKWMGRDVTLTVTEFLILETLAARPG 176 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + Q+ A Y D V++ ++SHI +LR+K R F+ +D+ GY Sbjct: 177 VVKNRNQLMDAAYQ-DDVYVDDRTIDSHIKRLRRKFRETDPEFNAIDTLYGAGY 229 >gi|302388870|ref|YP_003824691.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302199498|gb|ADL07068.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 233 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 4/116 (3%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 G DD V KP + E+ AR+ A+ RR++ + + + +GP + G +GE L Sbjct: 100 GADDYVVKPFNPLELTARIRAVLRRIRKAGLEDEKISSGPFMLDLKGHRVLKKGEELDLT 159 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 RE ++ M N GK ++ +I +A++G D + V+ HI +LR+K+ + G Sbjct: 160 PREFDLMALFMKNPGKAFSRDEILNAVWGA-DYVGDPKTVDVHIRRLREKVEDDPG 214 >gi|312197790|ref|YP_004017851.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229126|gb|ADP81981.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 229 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 17/171 (9%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +RA + P++ +S + + D G DD + KP E+ AR+ A+ RR Sbjct: 61 EVCRRLRAAERWAPVLMLSARGEVVDRVRGLDVGADDYLGKPFSFDELSARLRALIRR-- 118 Query: 121 VSNNRAETGPIRVFSDG--RDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ P+ + DG DP V+ G L +E +LEYLM + G+ +++T I Sbjct: 119 ----GAQERPVVLDIDGLRLDPTVRAASRDGVELDLSPKEFALLEYLMRHPGQVLSRTTI 174 Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ L +D NVV+ +++ LR+K+ G +++ R GY + N Sbjct: 175 LDHVWDLAYDR--NSNVVDQYVAYLRRKIDKPFGVAQLETVRGAGYRLRVN 223 >gi|262173228|ref|ZP_06040905.1| DNA-binding response regulator [Vibrio mimicus MB-451] gi|261890586|gb|EEY36573.1| DNA-binding response regulator [Vibrio mimicus MB-451] Length = 218 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I RA +P++ ++ + + D G D+ + KP E+LAR+ I RR S Sbjct: 63 LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 119 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE G + + ++ + L R E +IL LM G+ ++K + A++ Sbjct: 120 SGSAEELISVGELNLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +DE +N +E HI LRKKL + L + + R +GY I+ Sbjct: 180 G-WDEGSSDNAIEVHIHNLRKKLPDNL----IKNVRGVGYMIE 217 >gi|253687171|ref|YP_003016361.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753749|gb|ACT11825.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 226 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 11/204 (5%) Query: 27 EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF++ L +E + + D +A+ ++ +++ R IR Q+P+I ++ Sbjct: 23 EGFSTSRVLTGKEGVDGAMSGDYTAMILDVMLPDMSGIDVLRQIRKTQQLPVIMLTARGD 82 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETGPIRVFSDG 137 + + G DD + KP + RE++AR+ A+ RR K + A +G + + Sbjct: 83 NIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYDDQPSTKRDESVAASGDLVLNPAT 142 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 R E +G+ F L E +LE L+ + + V+K ++ G EA + + V+ HIS + Sbjct: 143 RISEWRGQPFDLTASEFNLLELLLRSPERVVSKDELSEKCLGRRREAYDRS-VDVHISNI 201 Query: 198 RKKLRNKLGFD-PVDSKRFLGYSI 220 R+KL G +++ R +GY I Sbjct: 202 RQKLSALPGSTMTIETVRSVGYRI 225 >gi|229030240|ref|ZP_04186297.1| Sensor histidine kinase [Bacillus cereus AH1271] gi|228731084|gb|EEL82009.1| Sensor histidine kinase [Bacillus cereus AH1271] Length = 231 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 13/207 (6%) Query: 27 EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+N + + +E LQ + +V + ++ LE+ + +R ++ VP++ +S Sbjct: 25 EGYNIYKAYDGDEALQMISTYEVDLMVLDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135 + +G DD + KP + E++ARV A+ RR N ++ E G IR+ S Sbjct: 85 DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSSKNEDGIIRIRSAEIHK 144 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 +V GE L E IL L +N G+ + +IF ++ D V HIS Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203 Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221 LR KL + G + + +GY I+ Sbjct: 204 NLRDKLETGMNGEKFIHTVWGVGYKIE 230 >gi|257126201|ref|YP_003164315.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257050140|gb|ACV39324.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 215 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 82/159 (51%), Gaps = 13/159 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S+VP+I +S +++ +D SG D V KP E+ AR+ R+ K+ Sbjct: 64 EVCKNVRKISKVPIIVVSAKNNVEEKVDLLKSGASDYVTKPFDFLELEARININIRKEKI 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S +T + + ++ + E P L + E +++ L+ N+ + V + +I I+G Sbjct: 124 SQITYKTLTLNL----QNYSLYLENVPILLTKTEFELVKLLIENKEEIVLRDKIIEKIWG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +N+++S I KK+R KLG + + + R +GY Sbjct: 180 W---EASDNLLDSTI----KKIRQKLGKEKIKTVRGIGY 211 >gi|221312018|ref|ZP_03593865.1| hypothetical protein Bsubs1_21806 [Bacillus subtilis subsp. subtilis str. 168] gi|221316343|ref|ZP_03598148.1| hypothetical protein BsubsN3_21712 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321256|ref|ZP_03602550.1| hypothetical protein BsubsJ_21665 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325539|ref|ZP_03606833.1| hypothetical protein BsubsS_21821 [Bacillus subtilis subsp. subtilis str. SMY] gi|296329976|ref|ZP_06872460.1| two-component response regulator (YycG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676701|ref|YP_003868373.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|321313602|ref|YP_004205889.1| two-component response regulator [Bacillus subtilis BSn5] gi|291486678|dbj|BAI87753.1| hypothetical protein BSNT_06200 [Bacillus subtilis subsp. natto BEST195] gi|296153015|gb|EFG93880.1| two-component response regulator (YycG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414945|gb|ADM40064.1| two-component response regulator (paired with YycG) [Bacillus subtilis subsp. spizizenii str. W23] gi|320019876|gb|ADV94862.1| two-component response regulator [Bacillus subtilis BSn5] Length = 236 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 21/220 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY DG ++E E LQ D+ ++ L K +E+ R +R Sbjct: 23 LRKEGYEVHCAHDG-----NEAVEMVEELQP----DLILLDIMLPNKDG--VEVCREVRK 71 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--------KV 121 +P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 72 KYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLTTAPAEEEP 131 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S+N G + +F D + E L RE +L YL + G+ + + + ++G + Sbjct: 132 SSNEIHIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHLLQTVWG-Y 190 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 D + V+ + +LR+K+ N + + ++R +GY + Sbjct: 191 DYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230 >gi|194446630|ref|YP_002041403.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405293|gb|ACF65515.1| response regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 240 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K + AE+ P+ + G+ L E R+L+ L GK Sbjct: 122 KNILRRCKPQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|159904286|ref|YP_001551630.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] gi|159889462|gb|ABX09676.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] Length = 269 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 23/174 (13%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S VP+I +S ++ + D G DD ++KP +E+ AR+A I RR+ Sbjct: 88 RRIRGESIVPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPGAS 147 Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 V + G + V ++ R GE L E +LE L + GK V + Sbjct: 148 SVAEPREIPVGQGVMKLGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFRDPGKVVPRA 207 Query: 172 QIFSAIYGLFD-EAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYS 219 +I ++G A + VV+ ++++LR KL DP + + R +GYS Sbjct: 208 EILEQLWGYPPRRAADLRVVDVYVARLRGKLEP----DPRNPELILTVRGIGYS 257 >gi|61968688|gb|AAX57187.1| Aur1P [Streptomyces aureofaciens] Length = 256 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 10/160 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA ++P+I ++ S + +G DD + KP RE++AR+ A+ RR + Sbjct: 99 EVCRGIRAAHEIPVIAVTARGSELDRVLGLQAGADDYLAKPYGFRELMARMEAVMRRARP 158 Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + T GP+ + S R+ + G R+E +L L ++ + + + ++ Sbjct: 159 TRPAFATITCGPLSIDSGTREVTLDGVPVETTRKEFDMLYLLASHPDTVIPRKMLMQQVW 218 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G ++ V++H+S LRNK+G + + R +G+ Sbjct: 219 G---DSWSRRTVDTHVS----TLRNKIGAGWIITIRGVGF 251 >gi|218702777|ref|YP_002410406.1| DNA-binding transcriptional regulator BasR [Escherichia coli IAI39] gi|300940585|ref|ZP_07155153.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|331650141|ref|ZP_08351214.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli M605] gi|56540585|gb|AAV92746.1| PmrA [Escherichia coli] gi|56540587|gb|AAV92747.1| PmrA [Escherichia coli] gi|56540591|gb|AAV92749.1| PmrA [Escherichia coli] gi|56540593|gb|AAV92750.1| PmrA [Escherichia coli] gi|56540595|gb|AAV92751.1| PmrA [Escherichia coli] gi|56540639|gb|AAV92773.1| PmrA [Escherichia coli] gi|56540641|gb|AAV92774.1| PmrA [Escherichia coli] gi|218372763|emb|CAR20641.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli IAI39] gi|281181203|dbj|BAI57533.1| two-component response regulator [Escherichia coli SE15] gi|300454642|gb|EFK18135.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|330908446|gb|EGH36965.1| transcriptional regulatory protein basR/pmrA [Escherichia coli AA86] gi|331041086|gb|EGI13243.1| transcriptional regulatory protein BasR/pmrA [Escherichia coli M605] Length = 222 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 100/227 (44%), Gaps = 15/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G ++ E QS S + L E L Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYACDGVSTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60 Query: 62 E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L RI + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 NN+ E+ G + + R + GE L +E +L LM G V + +++ Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 IY +D N +E HI LR+K+G + + R GY + N Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219 >gi|75675389|ref|YP_317810.1| two-component transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74420259|gb|ABA04458.1| two component transcriptional regulator, winged helix family [Nitrobacter winogradskyi Nb-255] Length = 238 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 11/154 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----- 127 P++ +S + + +G DD + KP E+LARV + RR RAE Sbjct: 87 TPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRR---HGGRAEETLYR 143 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 G + + R GE L RE R+LEYLM + G+ V +T + ++ FD + Sbjct: 144 VGDLELDRLSRRVARGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVWDYHFDP--Q 201 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NV++ HIS+LR K+ + + R GY + Sbjct: 202 TNVIDVHISRLRSKIDKGFEQPLLHTIRGAGYMV 235 >gi|65317712|ref|ZP_00390671.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] Length = 209 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 15/162 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 35 IEVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 94 Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V SN + F + E L +E +L++ +N G+ KTQ Sbjct: 95 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 154 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213 +F ++ D +E +N V HI KLRKK+ DP + K Sbjct: 155 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 190 >gi|312197850|ref|YP_004017911.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229186|gb|ADP82041.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 306 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 7/145 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-N 123 R+ A VP + ++ + Q + G DD V KP E++ARV AI RR Sbjct: 143 RLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAGSPVT 202 Query: 124 NRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 P+R DP + G + L E R+L++L+AN + + Q+ ++ Sbjct: 203 GDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQLLDHVW 262 Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203 G D + E V+E++IS LR+K+ N Sbjct: 263 G-HDFSGEGGVLETYISYLRRKVDN 286 >gi|161502712|ref|YP_001569824.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864059|gb|ABX20682.1| hypothetical protein SARI_00761 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 240 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 4/154 (2%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 I RR K + P+ + G+ L E R+L+ L GK + Sbjct: 122 KTILRRCKPQRELQQLDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFS 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + Q+ + +Y + V + ++SHI LR+KL + Sbjct: 182 REQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|92118478|ref|YP_578207.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91801372|gb|ABE63747.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 230 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 87/178 (48%), Gaps = 24/178 (13%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-A 113 G G+ VL R +R S VP+I +S +D D G DD VNKP + E++AR+ Sbjct: 62 GDGKDVL---RRVREWSDVPVIVLSARDREAEKIDSLDLGADDYVNKPFNVGELMARMRT 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANR 164 A+ RL+ AET +R D EV G L +E +L +L N Sbjct: 119 ALRHRLQ---RNAETPSLR----AGDLEVDVVRHRAMRAGVELKLTPKEFELLSFLAKNA 171 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 G+ + QI +A++G+ A + + +I +LR+K+ +K DP + ++ +GY I Sbjct: 172 GRVLTHRQILAAVWGVAHTA-DTQYLRVYIGQLRQKIEDK-ADDPRIILTEPGIGYRI 227 >gi|315158433|gb|EFU02450.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] Length = 234 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 20/202 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 LVK+GY E F + + EE L+ + I L+ LE+ R +R Sbjct: 21 LVKEGY-----------EVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGLEVAREVRK 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET- 128 +P+I ++ S + + G DD V KP +RE++ARV A RR + AE Sbjct: 70 THDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATNAKEAEVT 129 Query: 129 -------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + D +GE L RE +L YL + G+ + + + ++G + Sbjct: 130 TQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHLLQTVWG-Y 188 Query: 182 DEAVEENVVESHISKLRKKLRN 203 D + V+ + +LR+K+ + Sbjct: 189 DYFGDVRTVDVTVRRLREKIED 210 >gi|307264989|ref|ZP_07546550.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919974|gb|EFN50187.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 229 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 67/116 (57%), Gaps = 11/116 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG-------EV 146 G DD + KP + RE++ARV A+ RR+ N +++ + + + + +Q EV Sbjct: 94 GADDYITKPFNPRELVARVRAVIRRVYEFNASSKSINLLEYDEIKLDLIQNKAFVRGKEV 153 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN-VVESHISKLRKKL 201 F P RE +IL+ LM NR K V + ++ ++I+G D +E+ ++ HI +LR+K+ Sbjct: 154 FLTP-REFQILKMLMTNRKKVVKREELIASIWG--DSFIEDTKTLDVHIRRLREKI 206 >gi|291486019|dbj|BAI87094.1| hypothetical protein BSNT_05286 [Bacillus subtilis subsp. natto BEST195] Length = 237 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 9/167 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118 R IR S P+I IS + ++G DD + KP H ++A++ ++ RR Sbjct: 65 RQIRTISNAPIIFISARIDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYS 124 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 L + E G + ++ D + E ++E ++L + K V++ ++ A Sbjct: 125 PSLPQESRIVELGGLTIYPDQNEAEWNSSRILFSQKEFQLLSIFVREHKKIVSRDELLEA 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ D V++N + ++++LR+KL N D + + R GY N Sbjct: 185 LWDDVD-FVDDNTLTVNVNRLRRKLENAGLKDCISTIRGQGYQFQVN 230 >gi|271966751|ref|YP_003340947.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509926|gb|ACZ88204.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 228 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 8/146 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R++RA S VP+I + + D+G DD V KP + AR+ A+ RR + Sbjct: 61 CEVLRMLRAVSAVPVIVATARDDEPEIVRALDAGADDYVVKPFSAAHLDARIRAVLRRGR 120 Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ T P+RV GR+ + G L +E +L YL A G+ V+K ++ + Sbjct: 121 DADE--GTAPVRVGGLLIEQAGREAFLDGVRLDLTPKEFDLLHYLAARPGQVVSKRELLT 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 ++ + ++ V+ H+S LR+KL Sbjct: 179 EVWRMAYGGADKT-VDVHLSWLRRKL 203 >gi|258423936|ref|ZP_05686820.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|282902536|ref|ZP_06310429.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus C160] gi|282917981|ref|ZP_06325731.1| two-component system, OmpR family, response regulator [Staphylococcus aureus subsp. aureus D139] gi|282921200|ref|ZP_06328918.1| two-component system, OmpR family, response regulator [Staphylococcus aureus subsp. aureus C427] gi|283767707|ref|ZP_06340622.1| two-component system OmpR family response regulator [Staphylococcus aureus subsp. aureus H19] gi|257845843|gb|EEV69873.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|282315615|gb|EFB45999.1| two-component system, OmpR family, response regulator [Staphylococcus aureus subsp. aureus C427] gi|282318266|gb|EFB48626.1| two-component system, OmpR family, response regulator [Staphylococcus aureus subsp. aureus D139] gi|282596995|gb|EFC01954.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus C160] gi|283461586|gb|EFC08670.1| two-component system OmpR family response regulator [Staphylococcus aureus subsp. aureus H19] Length = 221 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 6/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S VP+I IS + G DD + KP + +A++ A+ RR L V+N Sbjct: 66 IRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLSVAN 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + D Q + L E +IL+ L N K V++T + + + Sbjct: 126 DSMTVKGCTLILDEAKVVYQEQNIQLSLTELQILKLLFQNEDKYVSRTALIEKCWE-SEN 184 Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 +++N + ++++LRKKL N +G D + +K+ +GY + Sbjct: 185 FIDDNTLAVNMTRLRKKL-NTIGVNDFIITKKNVGYKV 221 >gi|269957767|ref|YP_003327556.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306448|gb|ACZ31998.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 231 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 5/177 (2%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 D++ ++ L G +EL R IR+ VP++ ++ + + ++G DD V KP Sbjct: 50 DLAVLDVML--PGASGIELCRRIRSRLDVPVLLLTARGETEDRIAGLEAGADDYVPKPFS 107 Query: 105 HREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161 RE+ R A+ RR + + GP+RV R GEV L E R+L L Sbjct: 108 PREVALRAQALVRRTGARHEPRDVVVNGPVRVDVLRRTLTSGGEVVHLSELETRLLATLA 167 Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G+ V + + ++ A +V++ + ++R++L + G V + R GY Sbjct: 168 ERAGEVVTWRDLLNDVWSTASVAGGREMVKTAVYRVRQRLPERAGEPLVVTVRGRGY 224 >gi|210631702|ref|ZP_03296969.1| hypothetical protein COLSTE_00854 [Collinsella stercoris DSM 13279] gi|210159961|gb|EEA90932.1| hypothetical protein COLSTE_00854 [Collinsella stercoris DSM 13279] Length = 174 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 66/152 (43%), Gaps = 17/152 (11%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S VP+I IS + D+G DD + KP E+LARV A RR ++ A Sbjct: 12 VRGWSAVPIIVISARTEDSDKIGALDAGADDYLTKPFSVEELLARVRASLRRSGMAGAGA 71 Query: 127 ------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GP+ + + GE L E ++L L N GK + T I I+G Sbjct: 72 AESSTFDNGPLHIDFAAGCATLAGEELQLTPTEYKLLALLAKNVGKVLTHTFITHEIWG- 130 Query: 181 FDEAVEENVVESHISKLR---KKLRNKLGFDP 209 +S I+ LR + LR K+ DP Sbjct: 131 -------TSWDSDIASLRVFMRTLRKKIEADP 155 >gi|206976692|ref|ZP_03237597.1| regulatory protein VanR [Bacillus cereus H3081.97] gi|217962576|ref|YP_002341148.1| regulatory protein VanR [Bacillus cereus AH187] gi|222098545|ref|YP_002532603.1| response regulator protein [Bacillus cereus Q1] gi|229141828|ref|ZP_04270356.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|206745178|gb|EDZ56580.1| regulatory protein VanR [Bacillus cereus H3081.97] gi|217062992|gb|ACJ77242.1| regulatory protein VanR [Bacillus cereus AH187] gi|221242604|gb|ACM15314.1| response regulator protein [Bacillus cereus Q1] gi|228641664|gb|EEK97967.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 234 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 22/201 (10%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L +GY L +DG EE L+ + +V I ++ + + +R Sbjct: 23 LKNEGYRVLQAEDG-----------EEGLELLKKNEVHLIVLDIMMPKIDGIHMCMKVRE 71 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVS 122 +++P+I +S + +G DD V KP + E++AR+ + RR + V Sbjct: 72 IAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKMNGGISVQ 131 Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N N E G +++ + +V L RE ILE L N+G ++ QI+ ++ Sbjct: 132 NENEVEIGDMKINVTTHKVTIADQVVKLTPREFAILELLARNQGMVMSAEQIYERVWK-- 189 Query: 182 DEAVE-ENVVESHISKLRKKL 201 +EA + +N V HI K+R+K+ Sbjct: 190 EEAFQSDNTVMVHIRKIREKI 210 >gi|16223977|gb|AAL15573.1|AF233755_11 putative response regulator [Bacillus subtilis] Length = 220 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 L + IR P++ ++ + ++ +G DD + KP E+ ARV A RR Sbjct: 62 LCKQIRPLVDCPILFLTAKTEEEAIVNGLITGGDDYITKPFGIMELSARVNAHLRREHRE 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K + R +G + F D ++ + L + E +I E+L N+G+ ++ QI+ IYG Sbjct: 122 KHQSKRVISGFLFHF-DSKEVFINNHKLNLTKNEYKICEFLAQNKGRIFSREQIYEEIYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + A+ + E I +RKK + DP+ + +GY Sbjct: 181 IEGNALYSTITE-FIRTIRKKCKEH-NADPIKTIWGVGY 217 >gi|16081093|ref|NP_391921.1| two-component response regulator YycG [Bacillus subtilis subsp. subtilis str. 168] gi|586808|sp|P37478|YYCF_BACSU RecName: Full=Transcriptional regulatory protein yycF gi|467327|dbj|BAA05173.1| unknown [Bacillus subtilis] gi|1064814|dbj|BAA11300.1| yycF [Bacillus subtilis] gi|2636588|emb|CAB16078.1| two-component response regulator [YycG] [Bacillus subtilis subsp. subtilis str. 168] Length = 235 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 21/220 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY DG ++E E LQ D+ ++ L K +E+ R +R Sbjct: 22 LRKEGYEVHCAHDG-----NEAVEMVEELQP----DLILLDIMLPNKDG--VEVCREVRK 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--------KV 121 +P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 71 KYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLTTAPAEEEP 130 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S+N G + +F D + E L RE +L YL + G+ + + + ++G + Sbjct: 131 SSNEIHIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHLLQTVWG-Y 189 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 D + V+ + +LR+K+ N + + ++R +GY + Sbjct: 190 DYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 229 >gi|323485055|ref|ZP_08090408.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium symbiosum WAL-14163] gi|323693570|ref|ZP_08107773.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium symbiosum WAL-14673] gi|323401611|gb|EGA93956.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium symbiosum WAL-14163] gi|323502378|gb|EGB18237.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium symbiosum WAL-14673] Length = 230 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 94/201 (46%), Gaps = 27/201 (13%) Query: 40 SSAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTL 88 + AR+ + I AF + + +L LP+I IR S +P+I I+ S + + Sbjct: 29 AVARDGLEGITAFQKDRYDLILLDIMLPKIDGFAVCELIRKESNIPVIMITALSSEEEQV 88 Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP--------IRVFSDGRDP 140 D DD + KP ++ ++AA+ RR S A+ G + + D Sbjct: 89 RGLDLLADDYITKPFSMPVLIRKIAAVLRR---SGRGAKAGENQKLIYRDLCLDLDNYQT 145 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 V GE L +RE IL L+ ++GK + + + ++ ++ + VV++HI LR+K Sbjct: 146 FVDGEPVALTKREFEILRELLNHQGKVMTREILLEKLWK-YEFYGNDRVVDNHIKNLRRK 204 Query: 201 LRNKLGFDPVDSKRFLGYSID 221 L D +++ + +GY ID Sbjct: 205 LER----DYIETVKGIGYRID 221 >gi|317471872|ref|ZP_07931207.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316900645|gb|EFV22624.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 219 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 1/130 (0%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 ++P+I ++ + + + +G DD + KP E+LARV + RR + + +R + G + Sbjct: 71 EIPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLRRCQKTESRLKEGDL 130 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + R + QG+ L +E +L L+ N+ + + I+ I+G + V+ Sbjct: 131 EIDMSARIVKKQGQPVNLTVKEYELLLLLIQNKNIALFRDFIYEKIWG-SGYMGDSRTVD 189 Query: 192 SHISKLRKKL 201 H+ +LRKK+ Sbjct: 190 LHVQRLRKKI 199 >gi|307825786|ref|ZP_07656002.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307733094|gb|EFO03955.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 228 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 17/155 (10%) Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 KG +VL IR S++P++ + + +SG DD V KP RE+ AR+ AI Sbjct: 59 KGTEVLMR---IRMESRIPVLMFTARGDDVDRIIGLESGADDYVPKPCTPRELAARIRAI 115 Query: 116 YRRLK-----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR + V N GP++++S+ R + L E +LE L N G+ V K Sbjct: 116 LRRTQSVSDAVGNGPIVAGPLKIWSEKRKASWFDQDMDLTSTEFNLLETLAMNVGRIVTK 175 Query: 171 TQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201 ++ G FD + ++ H+S +R+KL Sbjct: 176 NELSEKALGRPLARFDRS-----IDVHMSSIRQKL 205 >gi|296273568|ref|YP_003656199.1| winged helix family two component transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296097742|gb|ADG93692.1| two component transcriptional regulator, winged helix family [Arcobacter nitrofigilis DSM 7299] Length = 229 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 3/151 (1%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIR 132 P++ I+ ++ F G DD + KPI +E++ RV A+ RR K++N N+ G Sbjct: 75 PILMITAKNQMEDIEKGFRLGTDDYMIKPIQLKEMVLRVNALLRRAKIANENKLVIGKSF 134 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + + + + LP +E +L L++ K + +I + I+GL EA +E V+S Sbjct: 135 LDYKALKINIDSKEYDLPPKEFYLLFLLLSYPDKIFTRYEIMNEIWGLESEA-DERTVDS 193 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 HI KLR++ F+ V + R LGY ++ Sbjct: 194 HIKKLRRRFEACQDFEIV-TIRGLGYKAKYH 223 >gi|282878424|ref|ZP_06287210.1| response regulator receiver domain protein [Prevotella buccalis ATCC 35310] gi|281299410|gb|EFA91793.1| response regulator receiver domain protein [Prevotella buccalis ATCC 35310] Length = 231 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/136 (24%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 + +P+I ++ + T+ F+ G DD ++KP RE+L R+ A+ RR +++ E Sbjct: 77 ASIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRIRAVIRRTNETDDHTEPKT 136 Query: 131 IRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 ++ D + + GE P + E +L ++ +G ++ ++ I+ D V Sbjct: 137 LKYQGLEMDLDKKTVTIDGENVPFTKTEFELLHLFLSEKGHVFSRQELIDRIWPK-DVLV 195 Query: 186 EENVVESHISKLRKKL 201 + V+ +I++LRKK+ Sbjct: 196 LDRTVDVNITRLRKKI 211 >gi|262041138|ref|ZP_06014355.1| two component response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041512|gb|EEW42566.1| two component response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 223 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D AL+ G I +G +G ++ E S A S I L E L Sbjct: 3 ILVIEDDALLLQGLILAMQSEGYVCDGVST--AHEAALSLASNHYSLIVLDLGLPDEDRL 60 Query: 62 E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 L R+ R P++ ++ +L+ + D+G DD + KP E+ AR+ A+ RR Sbjct: 61 HFLSRMRREKMTQPVLILTTRDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRHN 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N G +R+ R + L +E +L LM G V + +++ IY Sbjct: 121 NQGDNEISVGNLRLNVTRRLVWLGETALDLTPKEYALLSRLMMKAGSPVHREILYNDIYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D N +E HI LR+ K+G + + R GY + N Sbjct: 181 -WDNEPATNTLEVHIHNLRE----KIGKSRIRTVRGFGYMLANN 219 >gi|225569825|ref|ZP_03778850.1| hypothetical protein CLOHYLEM_05919 [Clostridium hylemonae DSM 15053] gi|225161295|gb|EEG73914.1| hypothetical protein CLOHYLEM_05919 [Clostridium hylemonae DSM 15053] Length = 246 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 83/169 (49%), Gaps = 21/169 (12%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S +P+I ++ S L + G DD + KP + +LA + + R+K Sbjct: 88 ICREIRRQSDIPVIVVTSSDSDMDELMSLNVGADDFITKPYNIHILLAHIGTVLHRVK-- 145 Query: 123 NNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 GP R F G +G+ L + E IL+YLM + G V++ + Sbjct: 146 ------GPGRSFVITHKGLSLDVLGSSASHRGKKADLTKNELGILKYLMEHAGAVVSRNE 199 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + ++ + +E +E++ + ++++LR+KL + +G D + +KR GY + Sbjct: 200 LICHMWEM-EEFIEDSTLTVNVNRLRRKLSD-IGLDDYLLTKRGQGYMV 246 >gi|254425350|ref|ZP_05039068.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196192839|gb|EDX87803.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 243 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 11/153 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 +RA S VP+I + S + + G +D + KP +E++AR+ +I RR Sbjct: 75 LRATSNVPIIMATVLGSSSDRVTGLEIGANDYIVKPFSTKELIARIRSILRRAARRQEHV 134 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V + E G + S R ++G L E R++E L + G ++ I A+ Sbjct: 135 SGVVHRSAIEIGQFVIDSSTRRAYIEGHNLRLTEIEFRLIELLASRPGHIFSRGDILEAL 194 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209 +G + A + V+ HIS+LR KL N+ +P Sbjct: 195 WGYDANSAADTKTVDVHISRLRIKL-NETTHNP 226 >gi|187777151|ref|ZP_02993624.1| hypothetical protein CLOSPO_00696 [Clostridium sporogenes ATCC 15579] gi|187774079|gb|EDU37881.1| hypothetical protein CLOSPO_00696 [Clostridium sporogenes ATCC 15579] Length = 227 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 97/208 (46%), Gaps = 21/208 (10%) Query: 29 FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP--------RIIRAHSQVPLIG 77 N EFE + ++ IE FL K + VL LP + IR S+ P+I Sbjct: 24 LNKWEFE---VNVCKDFEKIIECFLKYKPDVVLMDINLPVCDGFYWCKKIRQISKTPIIF 80 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRV 133 +S S + ++G DD + KP + ++A++ AI RR N + + + Sbjct: 81 VSSRDSNMEIVMAINNGGDDFIQKPFNSEVLIAKLQAIIRRTYEYKNEEAKVLKCDDLLL 140 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D + L + E +L+ LM N+GK V+++++ ++ D V EN + + Sbjct: 141 NLDNATLLYNEKSLELTKNEMLLLKTLMENKGKGVSRSKLMKKLWD-DDIYVNENTLTVN 199 Query: 194 ISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 I++LR +L K G D + +++ +GY I Sbjct: 200 INRLRNRLE-KFGIKDLIVTQKGIGYII 226 >gi|49476768|ref|YP_034607.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118476036|ref|YP_893187.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196042337|ref|ZP_03109611.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196047737|ref|ZP_03114937.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225862323|ref|YP_002747701.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228913014|ref|ZP_04076654.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229089401|ref|ZP_04220673.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42] gi|229182669|ref|ZP_04309911.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1] gi|49328324|gb|AAT58970.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415261|gb|ABK83680.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196021427|gb|EDX60134.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196026831|gb|EDX65464.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|225789225|gb|ACO29442.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228600809|gb|EEK58387.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1] gi|228693935|gb|EEL47626.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42] gi|228846634|gb|EEM91646.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 237 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 15/162 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 63 IEVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122 Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V SN + F + E L +E +L++ +N G+ KTQ Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213 +F ++ D +E +N V HI KLRKK+ DP + K Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIET----DPSNPK 218 >gi|81300262|ref|YP_400470.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|81169143|gb|ABB57483.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 244 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 8/148 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S VP+I ++ + + + G DD V KP +E+ AR+ ++ RR++ S Sbjct: 71 LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKSGANG 130 Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + IR+ ++ R E L E +LE L++ G+ ++ +I ++G Sbjct: 131 IPSSGVIQINSIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRAEILQEVWG 190 Query: 180 LFDE-AVEENVVESHISKLRKKLRNKLG 206 E V+ VV+ HIS+LR KL + G Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLEDDPG 218 >gi|23097812|ref|NP_691278.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776036|dbj|BAC12313.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 256 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/165 (23%), Positives = 80/165 (48%), Gaps = 8/165 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL +++ + +P+I ++ + D G DD + KP RE+++R+ + RR + Sbjct: 82 ELCEMVKRKADIPVIFLTVVDDEVNVVMGLDMGADDYITKPFRIRELISRIKTVLRRYEK 141 Query: 122 SN-NRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIF 174 S N+ + + ++G+V+ L E R+L + +RG+ +++ Q+ Sbjct: 142 SKPNKEQLSSVISIGSINIHTLEGKVYKETEEILLTALEYRLLMIFVNHRGQVLSRKQLL 201 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218 I+ + + V +N + +I +LRKK+ V ++ R +GY Sbjct: 202 QLIWDIAGDFVNDNTLTVYIKRLRKKIEEDAQHPTVIETVRGMGY 246 >gi|153947537|ref|YP_001400292.1| CpxR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|152959032|gb|ABS46493.1| transcriptional regulatory protein CpxR [Yersinia pseudotuberculosis IP 31758] Length = 227 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 81/167 (48%), Gaps = 15/167 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R S++P+I ++ + + G DD + KP + RE++AR+ A+ RR + N Sbjct: 64 RQVRKKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFEEQPN 123 Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T G + + R E QG+ F L E +LE L+ + + V K ++ Sbjct: 124 LSATESSIITQGGLTLNPSTRSSEWQGKPFDLTASEFNLLELLLRSPERVVTKDELSDKG 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLR----NKLGFDPVDSKRFLGYSI 220 G EA + + V+ HIS +R+KL N L + V R +GY I Sbjct: 184 LGRPREAYDRS-VDVHISNIRQKLAALPGNHLNIETV---RSIGYRI 226 >gi|326795781|ref|YP_004313601.1| transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326546545|gb|ADZ91765.1| two component transcriptional regulator, winged helix family [Marinomonas mediterranea MMB-1] Length = 232 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 15/162 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA S VP+I ++ + + G DD ++KP + RE+LAR+ AI RR + Sbjct: 67 IRAKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRATQEKDDD 126 Query: 127 ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG-- 179 I + R V GE+ L E +LE L+ G+ + K ++ G Sbjct: 127 PMTDIDMSGVLLRRKDRTVHVTGELVELTTSEYTLLECLLMVPGQVLTKQELSEKALGRK 186 Query: 180 --LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 ++D + ++ HIS LRKK+ N +P + + R +GY Sbjct: 187 LTMYDRS-----LDMHISNLRKKIGNLESGEPRIKTVRGVGY 223 >gi|294341687|emb|CAZ90106.1| Putative two-component regulatory response regulator receiver precursor, CHEY-like [Thiomonas sp. 3As] Length = 249 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 4/161 (2%) Query: 45 DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D ++ L G G VL R+ + P+I ++ + + +SG DD + KP+ Sbjct: 52 DACLLDWMLPGLSGPDVLCRLRLQLGANVPPVIFLTGRNAETDVVQALESGADDYLVKPL 111 Query: 104 HHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161 +LAR+ A+ RR + R G I R VQGE L RE + + + Sbjct: 112 SRPVLLARLQAVLRRSGSTLPAARLRLGEIEADCSRRQIFVQGERVELTDRETDLALHFL 171 Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 N + + + + I+GL E VE V+ H+S LR+KLR Sbjct: 172 QNVNRLLTRDFLIQTIWGLRPE-VETRTVDVHVSALRRKLR 211 >gi|269960945|ref|ZP_06175315.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834385|gb|EEZ88474.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 229 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 20/221 (9%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66 + LV+ GY+ + DGV +G E + D+ ++ L G +VL R Sbjct: 18 KGLVESGYVVDWVRDGV--DGLYHATSEPY-------DLILLDIMLPKLDGWQVLNTLRS 68 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-----RLKV 121 H+ P+I ++ ++ + F+ G +D V KP E+LAR+ ++R R++ Sbjct: 69 SDIHT--PVIMLTAKEQIEDRVRGFELGANDYVVKPYAFAELLARIQNVFRHHTSSRVQT 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 S+ + + + R G+ L +E +LE LM G+ +++T I S ++ + Sbjct: 127 SSQTLQIADLELDMMKRVATRGGQSITLTAKEYALLELLMRKEGQVLSRTTIASLVWDMN 186 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + NV++ I +LR K+ + + R +GY ++ Sbjct: 187 FDS--DTNVIDVAIKRLRNKVDKPFETPLIHTIRGMGYKLE 225 >gi|259502020|ref|ZP_05744922.1| response regulator [Lactobacillus antri DSM 16041] gi|259170021|gb|EEW54516.1| response regulator [Lactobacillus antri DSM 16041] Length = 229 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 78/148 (52%), Gaps = 9/148 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR S +P++ +S + + SG DD V KP + E++ARV ++ RR + Sbjct: 61 MEVIKQIRKDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRTQ 120 Query: 121 --VSNNRAE---TGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173 V+N++ + GP+ + D + + ++G+V L E IL YL+A+ RV + I Sbjct: 121 GEVTNDQPDVLNVGPLIINKDSHEVKTIKGDVIQLTALEFGIL-YLLASHPNRVFSADDI 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 F ++ + V V H+S LR K+ Sbjct: 180 FERVWQQ-ESVVSAKTVMVHVSHLRDKI 206 >gi|217970326|ref|YP_002355560.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217507653|gb|ACK54664.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 221 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 101/213 (47%), Gaps = 21/213 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIR 68 LV +GY DG+ +G + L ++ D ++ L GK G VL R Sbjct: 20 LVAEGYAVDLARDGI--DGAH-------LGATEPYDAVILDLGLPGKPGLTVLREWRA-- 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127 A ++VP++ ++ ++ +G DD + KP H E+LAR+ A+ RR V + Sbjct: 69 AANRVPVLILTARDGWAERVEGLQAGADDYLGKPFHVEELLARIQALLRRAAPVPDTELR 128 Query: 128 TGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 G R + R V G L E R+L Y M + + ++KT++ +Y +D Sbjct: 129 AGDWR-LDEARQCLVDRAGNEQALTATEFRLLRYFMRHPDEVLSKTRLSEHVYD-YDAER 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + NV+E ++ ++LR LG + ++++R GY Sbjct: 187 DSNVIEVYV----RRLRGLLGNERIETRRGQGY 215 >gi|118477989|ref|YP_895140.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|196032258|ref|ZP_03099672.1| DNA-binding response regulator [Bacillus cereus W] gi|196043485|ref|ZP_03110723.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218903730|ref|YP_002451564.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225864581|ref|YP_002749959.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228927655|ref|ZP_04090706.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229091597|ref|ZP_04222802.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|229122134|ref|ZP_04251349.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|229184827|ref|ZP_04312019.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|301054140|ref|YP_003792351.1| response regulator [Bacillus anthracis CI] gi|118417214|gb|ABK85633.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|195995009|gb|EDX58963.1| DNA-binding response regulator [Bacillus cereus W] gi|196025794|gb|EDX64463.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218535758|gb|ACK88156.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225790696|gb|ACO30913.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228598632|gb|EEK56260.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228661260|gb|EEL16885.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228691746|gb|EEL45496.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|228831999|gb|EEM77585.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|300376309|gb|ADK05213.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 235 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/167 (23%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P++ IS + ++G DD ++KP H+ ++A++ + RR Sbjct: 65 RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 KV + E + ++ + +++ + + R E +LE LM N + V++ + + ++ Sbjct: 125 PKVEDRMVEQQGLCLYPERLVLKLRNQEIDITRNEAILLEMLMKNYPRVVSREVLLNKLW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223 + V++N + + +++RKKL+ D +++ R +GY I W+ Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLQIEDAIETIRSVGYRLHITWD 230 >gi|82779650|ref|YP_405999.1| DNA-binding response regulator CreB [Shigella dysenteriae Sd197] gi|170021642|ref|YP_001726596.1| DNA-binding response regulator CreB [Escherichia coli ATCC 8739] gi|253774972|ref|YP_003037803.1| DNA-binding response regulator CreB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254164324|ref|YP_003047434.1| DNA-binding response regulator CreB [Escherichia coli B str. REL606] gi|293417871|ref|ZP_06660493.1| two-component system [Escherichia coli B185] gi|297517068|ref|ZP_06935454.1| DNA-binding response regulator CreB [Escherichia coli OP50] gi|300918114|ref|ZP_07134726.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300930636|ref|ZP_07146025.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300947478|ref|ZP_07161662.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300955637|ref|ZP_07167992.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|309787378|ref|ZP_07681990.1| transcriptional regulatory protein creB [Shigella dysenteriae 1617] gi|81243798|gb|ABB64508.1| catabolic regulation response regulator [Shigella dysenteriae Sd197] gi|169756570|gb|ACA79269.1| two component transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|242379919|emb|CAQ34756.1| CreB transcriptional regulator [Escherichia coli BL21(DE3)] gi|253326016|gb|ACT30618.1| two component transcriptional regulator, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976227|gb|ACT41898.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli B str. REL606] gi|253980384|gb|ACT46054.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia coli BL21(DE3)] gi|291430589|gb|EFF03587.1| two-component system [Escherichia coli B185] gi|300317474|gb|EFJ67258.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300414698|gb|EFJ98008.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300452912|gb|EFK16532.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300461487|gb|EFK24980.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|308924956|gb|EFP70451.1| transcriptional regulatory protein creB [Shigella dysenteriae 1617] gi|323939784|gb|EGB35986.1| response regulator receiver domain-containing protein [Escherichia coli E482] Length = 229 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 104/224 (46%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQAPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ ++ Sbjct: 125 FSSPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|326804087|ref|YP_004321905.1| response regulator receiver domain protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651342|gb|AEA01525.1| response regulator receiver domain protein [Aerococcus urinae ACS-120-V-Col10a] Length = 230 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 79/154 (51%), Gaps = 15/154 (9%) Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 KG++VL+ IR SQ+P+I ++ D+ G +D + KP +++E+LAR+ Sbjct: 58 KGDEVLDY---IRQSSQIPVIMLTALGDKDLVSDYLLKGANDYITKPFNNKEVLARITV- 113 Query: 116 YRRLKVSNNRAETGPIRVFSDGR---DPE-----VQGEVFPLPRRERRILEYLMANRGKR 167 +L+ S+ +A+ +V + DP+ E L + E +I L+++ + Sbjct: 114 --QLRQSHQQAKDQSDQVINFQAIHFDPKQFLIYTDQEAIRLTKIEAKIFHKLLSHPKQI 171 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 K +++ +I+ E+N + +H+S LRKKL Sbjct: 172 FTKERLYESIWQA-QYIAEDNTLNTHLSNLRKKL 204 >gi|222110191|ref|YP_002552455.1| winged helix family two component transcriptional regulator [Acidovorax ebreus TPSY] gi|221729635|gb|ACM32455.1| two component transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] Length = 242 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 9/193 (4%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 + L + D++ ++ L G LE+ R R H+ P++ I+ L + G Sbjct: 42 QALTAPQPPDLTLLDVML--PGIDGLEVLRQARRHTDNPIVVITARVEEVDRLIGLELGA 99 Query: 96 DDVVNKPIHHREILARVAAIYRR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 DD + KP RE++ARV A+ RR + G + + + G + L Sbjct: 100 DDYICKPFSPREVVARVKAVLRRRAPLAQAAAQAELAYGALVLDEAQLQATLHGTLVALT 159 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFD 208 RE +L L+A+ +++ Q+ Y + E V+SHI LR+KLR + G D Sbjct: 160 PREWHLLRTLLAHPRSVLSRAQLLQHAYPDSPQEPNERAVDSHIKNLRRKLRSADPAGHD 219 Query: 209 PVDSKRFLGYSID 221 + S +G++ D Sbjct: 220 WIRSVYGVGFAFD 232 >gi|167747056|ref|ZP_02419183.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662] gi|167654016|gb|EDR98145.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662] Length = 219 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 1/130 (0%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 ++P+I ++ + + + +G DD + KP E+LARV + RR + + +R + G + Sbjct: 71 EIPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLRRCQKTESRLKEGDL 130 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + R + QG+ L +E +L L+ N+ + + I+ I+G + V+ Sbjct: 131 EIDMSARIVKKQGQPVNLTVKEYELLLLLIQNKNIALFRDFIYEKIWG-SGYMGDSRTVD 189 Query: 192 SHISKLRKKL 201 H+ +LRKK+ Sbjct: 190 LHVQRLRKKI 199 >gi|134101789|ref|YP_001107450.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291009773|ref|ZP_06567746.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914412|emb|CAM04525.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 224 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 85/172 (49%), Gaps = 21/172 (12%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L + R +RA + P++ ++ ++ +D D+G DD + KP E+LARV A+ RR Sbjct: 60 LTMCRRLRADGDRTPILVLTARDAVADRIDGLDAGADDYLVKPFDLDELLARVRALLRRS 119 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L+ ++ +TG RV R E L R E +LE L+ N G+ + + Sbjct: 120 YPGDDTVLRCADLAVDTGAHRVRRGHRTVE-------LSRTEYALLEVLLRNAGQAMPRG 172 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221 + ++G D N +E ++ LR+KL + G +P V + R +GY +D Sbjct: 173 LLVERVWG-QDFGPSSNSLEVYVRYLRRKL--EAGGEPRLVHTVRGVGYRLD 221 >gi|49479205|ref|YP_036704.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330761|gb|AAT61407.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 235 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/167 (23%), Positives = 84/167 (50%), Gaps = 9/167 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P++ IS + ++G DD ++KP H+ ++A++ + RR Sbjct: 65 RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPCHYEVVMAKIRSHLRRAYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 KV + E + ++ + +++ + + R E +LE LM N + V++ + + ++ Sbjct: 125 PKVEDRMVEQHGLCLYPERLVLKLKNQEIDVTRNEAILLEMLMKNYPRVVSREVLLNKLW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223 + V++N + + +++RKKL+ D +++ R +GY I W+ Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLHIEDAIETIRSVGYRLHITWD 230 >gi|17158742|ref|NP_478253.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134691|dbj|BAB77249.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 245 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 16/160 (10%) Query: 57 GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G +EL + +R + +P++ ++ S+ + D+G DD + KP E+LAR+ A+ Sbjct: 58 GMSGIELCKRLRNRGNALPVLMLTAKDSMADKVAGLDAGADDYLIKPFGMAELLARLRAL 117 Query: 116 YRR--LKVSNNRAETGPIRVFSDG------------RDPEVQGEVFPLPRRERRILEYLM 161 RR L ++ ++ P+++ G + P + +V L ++E ++LEYLM Sbjct: 118 QRRSALGGASLTSQFQPLQLQVGGLILDCGNCTISRQYPNGENKVIYLTKKEFQLLEYLM 177 Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + + QI + +Y E V NVV + I LR+KL Sbjct: 178 KRPNTVITRDQILNHLYAFSAERV-SNVVAAQIRLLRRKL 216 >gi|116669221|ref|YP_830154.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116609330|gb|ABK02054.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 246 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 7/163 (4%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101 R DV ++ L G +EL IRA + +VP + ++ ++Q + +G DD V K Sbjct: 65 RPDVLVLDVML--PGFDGVELLTRIRAFAPEVPALFLTAKDAVQDRILGLAAGGDDYVTK 122 Query: 102 PIHHREILARVAAIYRRLKVSN-NRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 P E+L R+ + +R V+ + AE G + + D R+ GE L + +L Sbjct: 123 PFSMEEVLLRLHRLVQRSGVAAMDTAELVVGDLVLNIDTREVTRAGEELQLTATQFELLR 182 Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 YLM N + V+K QI ++ +D + N+VE +IS LRKK+ Sbjct: 183 YLMENPRRVVSKAQILDRVWD-YDFGGQANIVELYISYLRKKV 224 >gi|331701703|ref|YP_004398662.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329129046|gb|AEB73599.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 241 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 21/160 (13%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDF---FDSGVDDVVNKPIHHREILARVA 113 GE+VL+ R+ R + V L+ D T D + G DD + KP RE++AR+ Sbjct: 60 GEQVLKQLRMDRNDTPVILLTAKD-----TEFDKVFGLEMGADDYIPKPFSPREVIARIN 114 Query: 114 AIYRR------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161 A+ RR K + N TGP + + L +E ++EYL+ Sbjct: 115 AVLRRYEKSAAASETPATKSAENVETTGPFTIDHKKYRVSADSKNLKLTPKEFELMEYLV 174 Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ + +++ Q+ ++G FD + + +V+ I+ LR+K+ Sbjct: 175 SHENQVLSRDQLLQGVWG-FDYSGQSRMVDIQIAHLREKI 213 >gi|310639384|ref|YP_003944143.1| two component transcriptional regulator [Ketogulonicigenium vulgare Y25] gi|308752960|gb|ADO44104.1| two component transcriptional regulator [Ketogulonicigenium vulgare Y25] Length = 220 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 6/149 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 +P++ ++ + Q ++ D+G DD + KP E+++R A+ RR + R G + Sbjct: 73 MPVLILTARGTWQERVEGIDAGADDYLPKPFQMAELVSRARALVRRAGGQAAPRIAAGAL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V + + + G + E RIL L N+ + V ++ +YG D+ E N +E Sbjct: 133 EVDTTRMEVRLNGAQVFVTALEYRILSLLALNQSRAVPAVELLEHLYG-DDDTKEVNALE 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + I++LR+ KLG ++++R GY + Sbjct: 192 AAIARLRR----KLGPGILNTRRGFGYYL 216 >gi|220908317|ref|YP_002483628.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219864928|gb|ACL45267.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 224 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 17/157 (10%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRA 126 P++ ++ +L + D+G DD + KP E+LARV A+ RR L +S R Sbjct: 73 TPVLMLTARDTLADKVTGLDAGADDYMVKPFELPELLARVRAMLRRSGASVALNLSWGRL 132 Query: 127 ETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 P V D R L +E +LE L++N + +++T I I+ L D Sbjct: 133 HLNPSTYEVTFDNRP-------LSLTPKEYALLELLVSNGRRVLSRTGIIERIWSLEDPP 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 EE V+SHI LR KLR D +++ LGY + Sbjct: 186 SEET-VKSHIKGLRAKLREAGAPDNFIETVHGLGYRL 221 >gi|220908331|ref|YP_002483642.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] gi|219864942|gb|ACL45281.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 652 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 85/167 (50%), Gaps = 11/167 (6%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + L R +RA SQVP++ I+ + + D+G DD + KP+ E+ ARV A+ RR Sbjct: 60 ITLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRR- 118 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIF 174 + +T ++V + DP + L +E +LE + + G+ ++ Q+ Sbjct: 119 ---GSETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLV 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ D +EE+ V++H+ LR+KL+ D +++ +GY ++ Sbjct: 176 EHLWTFDDPPLEES-VKAHVKGLRQKLKAAGAVDWIENIYGIGYRLN 221 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 7/133 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + + L G+ L G N+ E W + S R D+ ++ + + Sbjct: 383 LLVDDDPIFLEQIVLLLQPWGIHLTGINN-PLELWSVLPSTRPDLLILDVEM--PQTSGI 439 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL + +R+ + +P+I ++ + +T F G DD V KP+ E+L R+ R Sbjct: 440 ELCQSLRSDPEWQSLPIIFLTAHRDRETIQQVFTVGADDFVTKPVVVPELLTRIINRLER 499 Query: 119 LKVSNNRAETGPI 131 ++ + A P+ Sbjct: 500 TRLIQSLASKDPL 512 >gi|6687469|emb|CAB64972.1| VicR protein [Enterococcus faecalis] Length = 283 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 20/202 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 LVK+GY E F + + EE L+ + I L+ LE+ R +R Sbjct: 70 LVKEGY-----------EVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGLEVAREVRK 118 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET- 128 +P+I ++ S + + G DD V KP +RE++ARV A RR + AE Sbjct: 119 THDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATNAKEAEVT 178 Query: 129 -------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + D +GE L RE +L YL + G+ + + + ++G + Sbjct: 179 TQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHLLQTVWG-Y 237 Query: 182 DEAVEENVVESHISKLRKKLRN 203 D + V+ + +LR+K+ + Sbjct: 238 DYFGDVRTVDVTVRRLREKIED 259 >gi|29375768|ref|NP_814922.1| DNA-binding response regulator VicR [Enterococcus faecalis V583] gi|227518447|ref|ZP_03948496.1| DNA-binding response regulator [Enterococcus faecalis TX0104] gi|227552977|ref|ZP_03983026.1| DNA-binding response regulator [Enterococcus faecalis HH22] gi|229546129|ref|ZP_04434854.1| DNA-binding response regulator protein [Enterococcus faecalis TX1322] gi|229550318|ref|ZP_04439043.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200] gi|255973090|ref|ZP_05423676.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255976129|ref|ZP_05426715.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256618776|ref|ZP_05475622.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256762196|ref|ZP_05502776.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256852841|ref|ZP_05558211.1| VicR protein [Enterococcus faecalis T8] gi|256958685|ref|ZP_05562856.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256962217|ref|ZP_05566388.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256965407|ref|ZP_05569578.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|257077961|ref|ZP_05572322.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|257082850|ref|ZP_05577211.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol] gi|257085548|ref|ZP_05579909.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|257086546|ref|ZP_05580907.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257089603|ref|ZP_05583964.1| two component system response regulator vicR [Enterococcus faecalis CH188] gi|257415810|ref|ZP_05592804.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG] gi|257419019|ref|ZP_05596013.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257422896|ref|ZP_05599886.1| two component system response regulator vicR [Enterococcus faecalis X98] gi|293383244|ref|ZP_06629160.1| DNA-binding response regulator VicR [Enterococcus faecalis R712] gi|293387601|ref|ZP_06632147.1| DNA-binding response regulator VicR [Enterococcus faecalis S613] gi|294781108|ref|ZP_06746458.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300860056|ref|ZP_07106144.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|307268695|ref|ZP_07550064.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307273520|ref|ZP_07554763.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307274483|ref|ZP_07555666.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307279011|ref|ZP_07560069.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|307288506|ref|ZP_07568492.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|307291176|ref|ZP_07571061.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|312899664|ref|ZP_07758988.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312903943|ref|ZP_07763112.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|312907168|ref|ZP_07766159.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312909787|ref|ZP_07768635.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312951046|ref|ZP_07769954.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|29343229|gb|AAO80992.1| DNA-binding response regulator VicR [Enterococcus faecalis V583] gi|227074125|gb|EEI12088.1| DNA-binding response regulator [Enterococcus faecalis TX0104] gi|227177886|gb|EEI58858.1| DNA-binding response regulator [Enterococcus faecalis HH22] gi|229304581|gb|EEN70577.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200] gi|229308653|gb|EEN74640.1| DNA-binding response regulator protein [Enterococcus faecalis TX1322] gi|255964108|gb|EET96584.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255969001|gb|EET99623.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256598303|gb|EEU17479.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256683447|gb|EEU23142.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256711300|gb|EEU26338.1| VicR protein [Enterococcus faecalis T8] gi|256949181|gb|EEU65813.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256952713|gb|EEU69345.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256955903|gb|EEU72535.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|256985991|gb|EEU73293.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|256990880|gb|EEU78182.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol] gi|256993578|gb|EEU80880.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|256994576|gb|EEU81878.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|256998415|gb|EEU84935.1| two component system response regulator vicR [Enterococcus faecalis CH188] gi|257157638|gb|EEU87598.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG] gi|257160847|gb|EEU90807.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257164720|gb|EEU94680.1| two component system response regulator vicR [Enterococcus faecalis X98] gi|291079422|gb|EFE16786.1| DNA-binding response regulator VicR [Enterococcus faecalis R712] gi|291082933|gb|EFE19896.1| DNA-binding response regulator VicR [Enterococcus faecalis S613] gi|294451786|gb|EFG20238.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300850874|gb|EFK78623.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|306497830|gb|EFM67362.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306500581|gb|EFM69912.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306504136|gb|EFM73348.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306508877|gb|EFM77964.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|306509797|gb|EFM78824.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306515007|gb|EFM83553.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310626196|gb|EFQ09479.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310631001|gb|EFQ14284.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|310632663|gb|EFQ15946.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311289745|gb|EFQ68301.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|311293170|gb|EFQ71726.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315027746|gb|EFT39678.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315029162|gb|EFT41094.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] gi|315031521|gb|EFT43453.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315035063|gb|EFT46995.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|315145504|gb|EFT89520.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315147675|gb|EFT91691.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315151377|gb|EFT95393.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] gi|315154083|gb|EFT98099.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315157370|gb|EFU01387.1| response regulator receiver domain protein [Enterococcus faecalis TX0043] gi|315162567|gb|EFU06584.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315165410|gb|EFU09427.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] gi|315166596|gb|EFU10613.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315169875|gb|EFU13892.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] gi|315172774|gb|EFU16791.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] gi|315575748|gb|EFU87939.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315578292|gb|EFU90483.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|315579808|gb|EFU91999.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|323480426|gb|ADX79865.1| response regulator [Enterococcus faecalis 62] gi|327534818|gb|AEA93652.1| response regulator [Enterococcus faecalis OG1RF] Length = 234 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 20/202 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 LVK+GY E F + + EE L+ + I L+ LE+ R +R Sbjct: 21 LVKEGY-----------EVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGLEVAREVRK 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET- 128 +P+I ++ S + + G DD V KP +RE++ARV A RR + AE Sbjct: 70 THDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATNAKEAEVT 129 Query: 129 -------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + D +GE L RE +L YL + G+ + + + ++G + Sbjct: 130 TQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHLLQTVWG-Y 188 Query: 182 DEAVEENVVESHISKLRKKLRN 203 D + V+ + +LR+K+ + Sbjct: 189 DYFGDVRTVDVTVRRLREKIED 210 >gi|283471296|emb|CAQ50507.1| KDP operon transcriptional regulatory protein KdpE [Staphylococcus aureus subsp. aureus ST398] Length = 231 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 17/200 (8%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRA 69 D I D ++L+ +N + Q+ + + + L+ G + L L IR Sbjct: 11 DHAITHLLDVALTLDYYNVTTADNATQAHFKIQIDKPDVILLDLGLPDKDGLCLISEIRQ 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 H+ +P+I IS QT + D+G +D + KP + E+ AR+ I R ++ + ET Sbjct: 71 HTDIPIIVISARQEEQTIIQALDNGANDYMTKPFNVDELRARIRVIER---IAKSHQETN 127 Query: 130 PIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 VF++G + + + L E +LE L ++GK + I IYG Sbjct: 128 --FVFTNGLLSIDFGSKSVVINNQEVHLTPNEFSLLELLSNHKGKVLTYEMILKRIYGYV 185 Query: 182 DEAVEENVVESHISKLRKKL 201 ++ E + H++ LR+KL Sbjct: 186 NKT-EMPSLRVHMTSLRQKL 204 >gi|190574616|ref|YP_001972461.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190012538|emb|CAQ46166.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 232 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 23/221 (10%) Query: 8 RALVKDGYI---ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLEL 63 + L++ GY+ A G DG+ L G S + ++ L G G VL Sbjct: 18 QGLIEAGYVVDLACNGVDGLHLAG------------SGEYQLVILDVMLPGLDGWNVLS- 64 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-- 121 R+ A QVP++ ++ S+ + + G DD + KP E+LARV + RR + Sbjct: 65 -RLREAGWQVPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRRGQAQP 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 R + V + R E G+ L ++E +LE L RG+ + ++ I S ++ + Sbjct: 124 QAERIVIADLVVDTLRRRVERGGQRITLSQKEYTLLELLARRRGEVLPRSLIASQVWDMN 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + NV++ I +LR K+ + + + R +GY ++ Sbjct: 184 FDS--DTNVIDVAIRRLRAKIDDDFDAKLIVTVRGMGYVLE 222 >gi|187777750|ref|ZP_02994223.1| hypothetical protein CLOSPO_01342 [Clostridium sporogenes ATCC 15579] gi|187774678|gb|EDU38480.1| hypothetical protein CLOSPO_01342 [Clostridium sporogenes ATCC 15579] Length = 217 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 73/149 (48%), Gaps = 4/149 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P+I ++ + + G DD + KP E+LAR+ A+ RR + + Sbjct: 72 IPVIFVTAKDDVLDRVKGLKLGADDYITKPFESIELLARIEAVLRRCGKIEEVIKLKHLD 131 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 +F + R + +GE+ + +E +L + N+ +++ QI ++G +D E V+ Sbjct: 132 IFPEQRLIKSKGEIIDITLKEYELLMLFIKNKNIALSREQILERVWG-YDYFGETRTVDI 190 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221 H+ ++R+KL K D + + +GY ++ Sbjct: 191 HVLRIREKLNLK---DCIKTVYKVGYRLE 216 >gi|116494021|ref|YP_805755.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|116104171|gb|ABJ69313.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] Length = 232 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 4/155 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA + VP+I ++ + + + +G DD V KP E+ AR+ A +RR RA Sbjct: 75 IRAITSVPIIFLTARVTDEDKVRGLGAGGDDYVTKPFSLAELGARIKAHFRRESQPQKRA 134 Query: 127 ETGPI-RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 ++ D R +V +V L +++ +++E L N G+ ++ Q++ I+G +D Sbjct: 135 RMAIFDQILIDYRAKQVSIGDQVLSLEKKQYQLVELLSLNPGQVFSREQLYEKIWG-YDA 193 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ V+ HI ++R P+++ +GY Sbjct: 194 LGDDRVITEHIRRIRLLFDRYQVTSPIETVWGVGY 228 >gi|328555724|gb|AEB26216.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens TA208] Length = 235 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 21/220 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY D + +G ++E E LQ D+ ++ L K +E+ R +R Sbjct: 22 LRKEGY-----DVHCAYDGNEAVEMVEELQP----DLILLDIMLPNKDG--VEVCREVRK 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKV------- 121 +P+I ++ S + + G DD V KP RE+LARV A RR L V Sbjct: 71 KYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLTVAPAEEES 130 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++N G + +F D + E L RE +L YL + G+ + + + ++G + Sbjct: 131 ASNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHLLQTVWG-Y 189 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 D + V+ + +LR+K+ N + + ++R +GY + Sbjct: 190 DYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 229 >gi|322376761|ref|ZP_08051254.1| DNA-binding response regulator VicR [Streptococcus sp. M334] gi|321282568|gb|EFX59575.1| DNA-binding response regulator VicR [Streptococcus sp. M334] Length = 234 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 11/153 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ + IR S VP+I +S S + + G DD V KP +RE+ ARV A+ RR Sbjct: 61 LEVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSH 120 Query: 119 -LKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + V A++ P + + + + GE L RE +L +L ++ G+ + + Sbjct: 121 PIPVDEQEADSKPQPIQIGDLEIVPEAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 180 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ I +LR+K+ + Sbjct: 181 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 212 >gi|308068213|ref|YP_003869818.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] gi|305857492|gb|ADM69280.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] Length = 228 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 7/117 (5%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE------TGPIRVFSDGRDPEVQG 144 + G DD ++KP RE+LAR+ A+ RRL+ A GP+RV R E+ Sbjct: 92 LELGADDFMSKPFDLRELLARIKALVRRLEREGAPAPEGTEVVLGPLRVRPSSRTAELGA 151 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L +E +L L+++ G+ + ++ ++ FD V+ HI +LRKKL Sbjct: 152 IALDLTPKEFDVLALLVSHAGRVYTRDELLEQVWS-FDYVGGTRTVDIHIQRLRKKL 207 >gi|254524305|ref|ZP_05136360.1| two component transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] gi|219721896|gb|EED40421.1| two component transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] Length = 239 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 16/223 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D A + D GD+G + S + L+ D ++ L G G +V Sbjct: 7 LIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPGVDGLQV 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + + VP+I IS S + + G DD + KP E++ARV A+ RR + Sbjct: 67 CQRARAMARY--VPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124 Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A E G +++ R V+G L RE +L + + + A+ ++ Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVEGTALELTPREFDLLLFFARHPDQVFARMEL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + ++G + E+ V +HI++LR K+ DP + +R L Sbjct: 185 LNQVWG-YQHDGYEHTVNTHINRLRSKIET----DPANPRRLL 222 >gi|209573944|gb|ACI62910.1| two component response regulator CusR2 [Acidithiobacillus thiooxidans] Length = 227 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ S +P+I IS +L ++ D G DD + KP E+LAR+ AI RR Sbjct: 70 LQRVRAMGSDLPIIIISARDALSDRIEGLDLGADDYLVKPFAMDELLARLRAIIRRQGGQ 129 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +G +++ ++ L RRE +L+ L+ G +++ Q+ +YG + Sbjct: 130 RSPVLSSGSLQLDLSTHIAQLGEASVLLSRREFALLQALLLRPGAILSRAQLEERLYG-W 188 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E +E N ++ I LRK KLG + + + R G+ + Sbjct: 189 GEEIESNSIDFLIHALRK----KLGAEVIKNVRGAGWMV 223 >gi|254380355|ref|ZP_04995721.1| two component transcriptional regulator [Streptomyces sp. Mg1] gi|194339266|gb|EDX20232.1| two component transcriptional regulator [Streptomyces sp. Mg1] Length = 236 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 12/167 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +RA VP+I ++ S + SG DD V KP E+LAR+ A+ RR Sbjct: 57 IEVCRELRARGGVPVIAVTARGSEPDRVRGLRSGADDYVVKPFGTAELLARIEAVLRR-- 114 Query: 121 VSNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N++ P+ G R + G+ PL R+E IL L+ G V++ +I Sbjct: 115 SMNHQPHPEPLLTLDGGLAIDLAQRTVTLDGQPVPLTRKEYDILAVLVRADGAAVSRDRI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + + ++ H++ LR KL V + R GY + Sbjct: 175 LVEVWQTAYDGMSRT-LDVHVATLRGKLGRTGSL--VQTVRGFGYRL 218 >gi|196040764|ref|ZP_03108063.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196028554|gb|EDX67162.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 223 Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 10/162 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S +P+ ++ S L + G DD + KP + +LARV I RR + Sbjct: 63 ICREIRKTSDIPIFMVTSRDSDVDELISMNLGADDFITKPYNTEILLARVTNILRR---T 119 Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + I ++ D Q + L + E +IL L+ NRG V + + Sbjct: 120 SGDFKMNHILIYRDFNLNLSNATVTYQDKSVELTKNEVKILSCLINNRGNIVKRDSLIET 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ D V+++ + +I++LRKKL +P+ ++R LGY Sbjct: 180 LWK-SDYFVDDSTLTVNINRLRKKLEEIGIENPIATRRSLGY 220 >gi|324329208|gb|ADY24468.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R + +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 222 >gi|323495121|ref|ZP_08100207.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546] gi|323310622|gb|EGA63800.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546] Length = 231 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 18/138 (13%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--------ETGPIRVFSDGRDPEVQGE 145 G DD + KP RE+LAR+ AI RR + S N E I+++ ++ QGE Sbjct: 93 GADDYLPKPFSDRELLARIRAILRRTQSSANGKQGKNSDCIEYQDIQIYPGKQEAYCQGE 152 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201 + L E +L + + N G+ + K + + G FD A ++ H+S LRKKL Sbjct: 153 LMVLTTTEFALLSHFVQNPGQTLTKEALSLDVLGKRLAAFDRA-----IDMHVSNLRKKL 207 Query: 202 -RNKLGFDPVDSKRFLGY 218 K G + + R GY Sbjct: 208 PERKDGKSRIKTLRGRGY 225 >gi|312863892|ref|ZP_07724130.1| response regulator protein GraR [Streptococcus vestibularis F0396] gi|311101428|gb|EFQ59633.1| response regulator protein GraR [Streptococcus vestibularis F0396] Length = 226 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP +LA++ + RR Sbjct: 67 IRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQ 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + D QGEV L + E +IL+ L G V++ + ++ D Sbjct: 127 SLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQILQVLFERSGNIVSREDLMKELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL D +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGL 222 >gi|295109503|emb|CBL23456.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 228 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 1/143 (0%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S VP+I +S + ++ F+ G DD + KP + + A+ +R N Sbjct: 69 REIRKISDVPVIILSARSEVTDQMNGFEKGADDYITKPFSLGLVKLHIEAVLKRAGKMKN 128 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E G I++ + + E+ + RRE +L Y + ++ +++ I +A++ +D A Sbjct: 129 ILECGKIKIEKGRQLVYREDEMLEMTRREYELLLYFIEHKETVLSRETILNAVWD-YDYA 187 Query: 185 VEENVVESHISKLRKKLRNKLGF 207 + V++ + ++RKKL + + Sbjct: 188 GDVRTVDTLVKQIRKKLGDDCNY 210 >gi|289662555|ref|ZP_06484136.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667795|ref|ZP_06488870.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 233 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 12/135 (8%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ ++ ++ + D G DD + KP RE AR + RR NR + + Sbjct: 73 TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRR-----NRGQASEVV 127 Query: 133 -----VFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 VF + + G LP RE R+ E L+ G+ V K +I + ++G FD+ Sbjct: 128 QIGGFVFDNAAHTLTLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNGLFG-FDDDAG 186 Query: 187 ENVVESHISKLRKKL 201 N +E ++ +LR+KL Sbjct: 187 PNAIELYVGRLRRKL 201 >gi|268607933|ref|ZP_06141664.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 228 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 4/144 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +E +++R +Q P+I ++ + + F SG DD + KP + AR+ A RR Sbjct: 61 MEFCKLLRTKTQAPVIFLTARDENDSVIMGFRSGGDDYITKPYDLNVLKARIEAQLRRNT 120 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V + + E + V + G LP+RE +IL L ++ G R++ I+ I Sbjct: 121 NQQVQHPKIELPYLTVDLFSGTVTLDGNECSLPQRELQILYLLASHIGSRISYHDIYKNI 180 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 YG D +N + +IS+L+K L Sbjct: 181 YGC-DVEDSKNTIRVNISRLKKHL 203 >gi|228993566|ref|ZP_04153474.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228766157|gb|EEM14803.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 229 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 76/166 (45%), Gaps = 10/166 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----RLK 120 R IR SQVP+I ++ TL F+ G DD V KP +LAR + K Sbjct: 66 RRIRKTSQVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRILTSK 125 Query: 121 VSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +N +T I V R ++G L E IL Y M N+ + + Q+ S I Sbjct: 126 SPSNEDDTLSIHGICVHFPSRIVTIEGVDINLTHTEFEILTYFMQNQWIVLTREQLISRI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G ++ A ++ V SHI LR KL +K + + + +GY + N Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGDKAKY--ITTVVRMGYKFEGN 228 >gi|260588299|ref|ZP_05854212.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] gi|260541350|gb|EEX21919.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] Length = 230 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 74/146 (50%), Gaps = 17/146 (11%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + +P++ + + + +G DD + KP E++AR+A++ RR N +A Sbjct: 67 IRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNQQA 126 Query: 127 ETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G I+ + + R + F LP +E +L Y ++GK + K QI+ ++ Sbjct: 127 --GAIQKLNFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVW 184 Query: 179 G---LFDEAVEENVVESHISKLRKKL 201 G +D++ N++ + IS+LRKKL Sbjct: 185 GEEYFYDDS---NIM-AIISRLRKKL 206 >gi|239815299|ref|YP_002944209.1| two component transcriptional regulator PhoB, winged helix family [Variovorax paradoxus S110] gi|239801876|gb|ACS18943.1| two component transcriptional regulator PhoB, winged helix family [Variovorax paradoxus S110] Length = 230 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 5/114 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFP 148 D+G DD + KP +E+LAR+ A+ RR +V R E G + + + QG Sbjct: 96 LDAGADDYITKPFSTQEMLARIRAVLRRRAPEVVTERVEIGELALDTATHRVTWQGNALK 155 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201 + E ++L YLM + + ++ Q+ ++G D +EE V+ H+ +LR+ L Sbjct: 156 VGPTEFKLLAYLMQHAERVHSRAQLLDKVWG--DHVYIEERTVDVHVKRLRESL 207 >gi|254386084|ref|ZP_05001398.1| two-component system regulator [Streptomyces sp. Mg1] gi|194344943|gb|EDX25909.1| two-component system regulator [Streptomyces sp. Mg1] Length = 240 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 84/205 (40%), Gaps = 23/205 (11%) Query: 35 EEWLQSSAREDVSAIEAFLIGKG---EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFF 91 EE LQ+ D L+ G + E+ IR + P+I ++ +++ + Sbjct: 34 EEALQALLPADAPPFGVVLLDLGLPDQDGYEVCGKIRKRTSTPVIMVTARADVRSRIHGL 93 Query: 92 DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----------------GPIRVFS 135 + G DD V KP E+LAR+ A+ RR S N A GP+ + Sbjct: 94 NMGADDYVVKPYDTGELLARIHAVARRTGGSENTATATPGPAGTGGEPGVVRLGPVSIEL 153 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 R V G PL R+E +L L G + QI S ++ E +E H++ Sbjct: 154 PTRRVSVDGADVPLTRKEFDLLALLAQRPGVVFRREQIISEVWRTSWEGTGRT-LEVHVA 212 Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220 LR KLR + V R +GY + Sbjct: 213 SLRSKLRMPALIETV---RGVGYRL 234 >gi|163789835|ref|ZP_02184271.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Carnobacterium sp. AT7] gi|159874775|gb|EDP68843.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Carnobacterium sp. AT7] Length = 242 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 17/124 (13%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----------------GPIRVFSDG 137 G DD + KP RE+LAR+ AI RR+ +N E G IR+ Sbjct: 95 GADDYMTKPFSPREVLARMKAIMRRMSSKSNAEEALKTKDTIKEEAELVQVGDIRIDPSQ 154 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 + V+ E + +E +L Y++ + +++ Q+ AI+ FD A E +V+ HIS L Sbjct: 155 YEVIVRDEKVDVTPKEFELLMYMIKRINRILSREQLLDAIWN-FDYAGETRIVDVHISHL 213 Query: 198 RKKL 201 R+K+ Sbjct: 214 REKI 217 >gi|120555441|ref|YP_959792.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120325290|gb|ABM19605.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 242 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 73/148 (49%), Gaps = 13/148 (8%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128 VP + ++ S + D+G DD + KP E++AR+ A+ RR SN E Sbjct: 74 VPAVFLTQRDSETDIVRALDAGADDYIAKPARAAELVARINALARR---SNPEIEKEVLV 130 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 GP + ++ R + GE L ++ + +L N+G+ + + + ++GL + + Sbjct: 131 YGPFEINTNQRIILLHGEPLTLTDKDFDLTLFLFQNQGRLLTREMLLERVWGLTRD-INT 189 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRF 215 V++H+S+LR+ +LG +P + R Sbjct: 190 RTVDTHMSRLRR----RLGLNPENGFRI 213 >gi|189346808|ref|YP_001943337.1| two component transcriptional regulator, winged helix family [Chlorobium limicola DSM 245] gi|189340955|gb|ACD90358.1| two component transcriptional regulator, winged helix family [Chlorobium limicola DSM 245] Length = 222 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 81/162 (50%), Gaps = 4/162 (2%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R +R A S VP++ ++ +L+ + D+G +D + KP E+LAR+ RR Sbjct: 60 IEVCRQVRKAGSSVPILFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRRN 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ G + V + L +E +LE+L N+ K +++I ++ Sbjct: 120 NPESDTITAGCVTVNPVTHQVFCRNTEIALTPKEFSLLEFLARNKDKVCTRSRIIEHVWD 179 Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + FD + +V++ +I+ LRKKL + + + R +GY I Sbjct: 180 MHFDS--DTSVIDVYINFLRKKLDIVGCGNIIQTIRGVGYII 219 >gi|320324367|gb|EFW80446.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. glycinea str. B076] gi|320328510|gb|EFW84512.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. glycinea str. race 4] Length = 227 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 3/167 (1%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +++ R +R+ S VP++ I+ L D G DD + KP RE++ARV AI Sbjct: 63 GRDGMDICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAIL 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR S + ++V G L E R+L + G+ ++ + Sbjct: 123 RRTS-STDPHTPKVLQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +Y V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 182 LYS-DHRVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLEL 227 >gi|321312445|ref|YP_004204732.1| two-component response regulator [Bacillus subtilis BSn5] gi|320018719|gb|ADV93705.1| two-component response regulator [Bacillus subtilis BSn5] Length = 240 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 15/141 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-----------GPIRVFSDGRDPEV 142 G DD + KP RE+ ARV AI RR +++ +E G +++ D + Sbjct: 96 GADDYMTKPFSPREVNARVKAILRRSEIAAPSSEMKNDEMEGQIVIGDLKILPDHYEAYF 155 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + L +E +L YL ++G+ + + + SA++ +D A + +V+ HIS LR K+ Sbjct: 156 KESQLELTPKEFELLLYLGRHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIE 214 Query: 203 NKLGFDPVDSK--RFLGYSID 221 N PV K R LGY ++ Sbjct: 215 NNTK-KPVYIKTIRGLGYKLE 234 >gi|296329647|ref|ZP_06872132.1| two-component response regulator (YkoH) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674044|ref|YP_003865716.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296153145|gb|EFG94009.1| two-component response regulator (YkoH) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412288|gb|ADM37407.1| two-component response regulator (paired with YkoH) [Bacillus subtilis subsp. spizizenii str. W23] Length = 228 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 19/207 (9%) Query: 27 EGFN-SLEFE--EWLQSSAREDVSAIEAFLIGKGEKVLE-LPRIIRAHSQVPLIGISDYP 82 EG+N ++++ E L ++A S + ++ G LE L R+ + Q P+I ++ Sbjct: 26 EGYNVTIKYNGTEGLNAAAEGRYSLVLLDVMLPGLSGLEVLRRLRKTDQQTPVILLTARD 85 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF---SDGRD 139 S+ + D G +D V KP E+LAR+ R+ + N +T I F D R Sbjct: 86 SIPDKVTGLDIGANDYVTKPFEIEELLARI-----RVALRQNGTKTEDIDTFLTYDDLRV 140 Query: 140 PEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 E EV L RE +L Y++ + + + + QI ++++G FD + NVV+ + Sbjct: 141 NEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILNSVWG-FDYIGDTNVVDVY 199 Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I +RKKL + + R +GY+I Sbjct: 200 IRYIRKKLDYPYEKQLIHTVRGVGYAI 226 >gi|229017295|ref|ZP_04174199.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229023471|ref|ZP_04179968.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228737824|gb|EEL88323.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228743996|gb|EEL94094.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 225 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/199 (22%), Positives = 97/199 (48%), Gaps = 5/199 (2%) Query: 27 EGFNSLEFEEWLQSSAR-EDVSAIEAFL--IGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + E + L + R E+V A L + +L +R + +P++ ++ Sbjct: 25 EGFQTYEAVDGLDALRRIEEVKVDMAILDIMMPNMDGFDLCYELRKYYDMPILMLTAKGE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEV 142 + F G DD + KP E++ RV A+ +R +++ +++ + G + + + + Sbjct: 85 TSQKIKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQITVSQSIQVGNVLLNRNTFEVNA 144 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + LP +E +L L + G+ ++ Q+ ++G +D E ++ HI++LR+K + Sbjct: 145 GEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEGNERTLDVHINRLREKFQ 203 Query: 203 NKLGFDPVDSKRFLGYSID 221 +L + + R LGY ++ Sbjct: 204 EELSKFSIRTIRGLGYRLE 222 >gi|194291911|ref|YP_002007818.1| response regulator [Cupriavidus taiwanensis LMG 19424] gi|193225815|emb|CAQ71761.1| putative response regulator [Cupriavidus taiwanensis LMG 19424] Length = 245 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 5/134 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR----AET 128 VP+I ++ +D D+G DD V +P++ R ++AR+AA+ RR+ R + Sbjct: 68 VPIILLAADNCEDKLVDALDAGADDYVCRPLNARVLMARIAALRRRVTGERVRQGLVVQA 127 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 GP ++ S GR + GE + +E + L +N G+ +A +I AI+ + Sbjct: 128 GPYQLNSTGRFATLHGERIAMTPKEFDLAMMLFSNVGRVLASERIQQAIW-RHELPPLSR 186 Query: 189 VVESHISKLRKKLR 202 + IS+LRK LR Sbjct: 187 ALAGLISRLRKTLR 200 >gi|104781058|ref|YP_607556.1| DNA-binding response regulator [Pseudomonas entomophila L48] gi|95110045|emb|CAK14750.1| putative DNA-binding response regulator [Pseudomonas entomophila L48] Length = 222 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 7/152 (4%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN--RA 126 A+ P++ ++ S ++ +G DD + KP H E+ R+ A+ RR K N R Sbjct: 69 ANLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRAKGLANQPRL 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 E + + + +G L E R+L Y M + G+ ++K+ + +Y E + Sbjct: 129 EAAGLHLDESRQCVSREGVDIQLTAAEFRLLRYFMLHPGQVLSKSHLAEHLYDGETER-D 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 NV+E H++ LR+ KLG ++++R GY Sbjct: 188 SNVLEVHVNHLRR----KLGRSVIETRRGQGY 215 >gi|49483935|ref|YP_041159.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257425808|ref|ZP_05602232.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428474|ref|ZP_05604872.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431108|ref|ZP_05607485.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433791|ref|ZP_05610149.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus E1410] gi|257436707|ref|ZP_05612751.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus M876] gi|282904264|ref|ZP_06312152.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus C160] gi|282906089|ref|ZP_06313944.1| two-component system OmpR family alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus Btn1260] gi|282909004|ref|ZP_06316822.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911320|ref|ZP_06319122.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282914489|ref|ZP_06322275.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus M899] gi|282919458|ref|ZP_06327193.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus subsp. aureus C427] gi|282924835|ref|ZP_06332501.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus C101] gi|283958444|ref|ZP_06375895.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus A017934/97] gi|293503567|ref|ZP_06667414.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus 58-424] gi|293510582|ref|ZP_06669287.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus subsp. aureus M809] gi|293537124|ref|ZP_06671804.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus M1015] gi|295428264|ref|ZP_06820893.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590773|ref|ZP_06949411.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|49242064|emb|CAG40763.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271502|gb|EEV03648.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275315|gb|EEV06802.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278056|gb|EEV08704.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281884|gb|EEV12021.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus E1410] gi|257284058|gb|EEV14181.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus M876] gi|282313201|gb|EFB43597.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus C101] gi|282317268|gb|EFB47642.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus subsp. aureus C427] gi|282321670|gb|EFB51995.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus M899] gi|282325015|gb|EFB55325.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282327268|gb|EFB57563.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331381|gb|EFB60895.1| two-component system OmpR family alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus Btn1260] gi|282595882|gb|EFC00846.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus C160] gi|283470960|emb|CAQ50171.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus aureus subsp. aureus ST398] gi|283790593|gb|EFC29410.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus A017934/97] gi|290919969|gb|EFD97037.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus M1015] gi|291095233|gb|EFE25498.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus 58-424] gi|291466473|gb|EFF08994.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus subsp. aureus M809] gi|295127664|gb|EFG57301.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575659|gb|EFH94375.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|312437849|gb|ADQ76920.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315195597|gb|EFU25984.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus CGS00] Length = 233 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE------TGPIRVFSDGRDPEVQGEVF 147 G DD + KP RE++ARV AI RR + E G IR+ D + E+ Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRSQFVKEVEEIDDDITIGSIRIRPDYFEVYKHNELL 155 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLG 206 L +E +L YL+ +G+ + + + + ++ ++ A + +V+ HIS LR KL N Sbjct: 156 ELTPKEFELLLYLIERQGRVITREHMLNTVWN-YEFAGDSRIVDVHISHLRDKLEDNPKK 214 Query: 207 FDPVDSKRFLGYSID 221 + + R LGY ++ Sbjct: 215 PQLIKTVRGLGYKLE 229 >gi|157155282|ref|YP_001463431.1| DNA-binding transcriptional regulator BaeR [Escherichia coli E24377A] gi|187730866|ref|YP_001879801.1| DNA-binding transcriptional regulator BaeR [Shigella boydii CDC 3083-94] gi|193069293|ref|ZP_03050249.1| DNA-binding response regulator BaeR [Escherichia coli E110019] gi|194431476|ref|ZP_03063768.1| DNA-binding response regulator BaeR [Shigella dysenteriae 1012] gi|209919543|ref|YP_002293627.1| DNA-binding transcriptional regulator BaeR [Escherichia coli SE11] gi|218554646|ref|YP_002387559.1| DNA-binding transcriptional regulator BaeR [Escherichia coli IAI1] gi|218695701|ref|YP_002403368.1| DNA-binding transcriptional regulator BaeR [Escherichia coli 55989] gi|260856059|ref|YP_003229950.1| DNA-binding response regulator BaeR in two-component regulatory system with BaeS [Escherichia coli O26:H11 str. 11368] gi|260868788|ref|YP_003235190.1| DNA-binding response regulator BaeR in two-component regulatory system with BaeS [Escherichia coli O111:H- str. 11128] gi|300818923|ref|ZP_07099128.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300821816|ref|ZP_07101961.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300902275|ref|ZP_07120272.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|301304482|ref|ZP_07210593.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|301643523|ref|ZP_07243567.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|309792958|ref|ZP_07687386.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|331653508|ref|ZP_08354509.1| transcriptional regulatory protein BaeR [Escherichia coli M718] gi|331668775|ref|ZP_08369623.1| transcriptional regulatory protein BaeR [Escherichia coli TA271] gi|331677990|ref|ZP_08378665.1| transcriptional regulatory protein BaeR [Escherichia coli H591] gi|331683763|ref|ZP_08384359.1| transcriptional regulatory protein BaeR [Escherichia coli H299] gi|157077312|gb|ABV17020.1| DNA-binding response regulator BaeR [Escherichia coli E24377A] gi|187427858|gb|ACD07132.1| DNA-binding response regulator BaeR [Shigella boydii CDC 3083-94] gi|192957426|gb|EDV87873.1| DNA-binding response regulator BaeR [Escherichia coli E110019] gi|194420301|gb|EDX36378.1| DNA-binding response regulator BaeR [Shigella dysenteriae 1012] gi|209912802|dbj|BAG77876.1| two-component response regulator [Escherichia coli SE11] gi|218352433|emb|CAU98207.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli 55989] gi|218361414|emb|CAQ99001.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli IAI1] gi|257754708|dbj|BAI26210.1| DNA-binding response regulator BaeR in two-component regulatory system with BaeS [Escherichia coli O26:H11 str. 11368] gi|257765144|dbj|BAI36639.1| DNA-binding response regulator BaeR in two-component regulatory system with BaeS [Escherichia coli O111:H- str. 11128] gi|300405637|gb|EFJ89175.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300525658|gb|EFK46727.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300528542|gb|EFK49604.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300840208|gb|EFK67968.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|301078096|gb|EFK92902.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|308123244|gb|EFO60506.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|315255409|gb|EFU35377.1| response regulator receiver domain protein [Escherichia coli MS 85-1] gi|320179499|gb|EFW54454.1| Response regulator BaeR [Shigella boydii ATCC 9905] gi|323152300|gb|EFZ38589.1| transcriptional regulatory protein baeR [Escherichia coli EPECa14] gi|323172671|gb|EFZ58305.1| transcriptional regulatory protein baeR [Escherichia coli LT-68] gi|323177024|gb|EFZ62614.1| transcriptional regulatory protein baeR [Escherichia coli 1180] gi|324019615|gb|EGB88834.1| response regulator receiver domain protein [Escherichia coli MS 117-3] gi|324119108|gb|EGC12997.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|331048357|gb|EGI20433.1| transcriptional regulatory protein BaeR [Escherichia coli M718] gi|331063969|gb|EGI35880.1| transcriptional regulatory protein BaeR [Escherichia coli TA271] gi|331074450|gb|EGI45770.1| transcriptional regulatory protein BaeR [Escherichia coli H591] gi|331078715|gb|EGI49917.1| transcriptional regulatory protein BaeR [Escherichia coli H299] gi|332092359|gb|EGI97433.1| transcriptional regulatory protein baeR [Shigella dysenteriae 155-74] Length = 240 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 8/156 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167 I RR K + AE+ P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ + + +Y + V + ++SHI LR+KL + Sbjct: 180 FSREHLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|290352153|dbj|BAI78787.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+R + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRSQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|290352123|dbj|BAI78772.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+ R + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFSRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|227872060|ref|ZP_03990437.1| response regulator [Oribacterium sinus F0268] gi|227842091|gb|EEJ52344.1| response regulator [Oribacterium sinus F0268] Length = 233 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 95/224 (42%), Gaps = 26/224 (11%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 LV DGY + F + EE LQ ++E++ + ++ G LE+ R IR Sbjct: 23 LVSDGY-----------KVFKAYNAEEGLQILSQEEIHLVLLDVMMPGMNGLEMCRKIRE 71 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---------K 120 S +P+I +S + G DD V KP + E+ ARV + RR Sbjct: 72 SSNIPVIMLSAKSEDLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRRYTQLNPNAGPN 131 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 NN + + D + E L E IL L ++ GK + +IF ++ Sbjct: 132 YVNNEIHIRNMLINKDNHKVLIDDEDIKLTPIEFDILFLLASHPGKVFSTDEIFEKVW-- 189 Query: 181 FDEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221 +E V E N V HI +LR K++ D + + + +GY I+ Sbjct: 190 -NEKVYEANNTVMVHIRRLRGKMKEDQREDKIITTVWGVGYKIE 232 >gi|218671174|ref|ZP_03520845.1| two-component response regulator protein [Rhizobium etli GR56] Length = 169 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 21/171 (12%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +RA +Q ++ ++ + + + D G DD + KP E ARV + RR Sbjct: 4 LDVLRAMRARQNQAAVLILTARGAPEERVKGLDLGADDYLIKPFDIAEFEARVRVLLRR- 62 Query: 120 KVSNNRAET---GPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + R+ T G I R FS G P +P RE +LE L GK VAK Sbjct: 63 -QAGLRSATVGFGGISFDLNSRTFSAGSTP------LDIPARELGLLEILFMRAGKVVAK 115 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I ++ FD+ + N +E ++S+LRK+L + G V + R +GY +D Sbjct: 116 EAIIQSLTA-FDDDISANAIEQYVSRLRKRL-SPHGL-TVKTARGIGYYLD 163 >gi|219850153|ref|YP_002464586.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219544412|gb|ACL26150.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 231 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 6/116 (5%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGE 145 ++G DD + KP RE++ARV A+ RR + + + I DP + G+ Sbjct: 93 LETGADDYLTKPFAPRELVARVRALLRRPRHTEVSMPSSLIHYGGLVIDPVAHTVALDGQ 152 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + L E +L + A G+ ++TQ+ I+G D +E+VVE HI+ LRKKL Sbjct: 153 LLTLTPIEYALLSVMAAAPGRVFSRTQLLDRIWG-HDYFGDEHVVEVHITNLRKKL 207 >gi|30260460|ref|NP_842837.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525548|ref|YP_016897.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183302|ref|YP_026554.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165871408|ref|ZP_02216056.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634255|ref|ZP_02392577.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640089|ref|ZP_02398356.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170689714|ref|ZP_02880889.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170709461|ref|ZP_02899865.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|190567317|ref|ZP_03020231.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196036931|ref|ZP_03104313.1| DNA-binding response regulator [Bacillus cereus W] gi|218901477|ref|YP_002449311.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227812952|ref|YP_002812961.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228931776|ref|ZP_04094674.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944083|ref|ZP_04106463.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229602359|ref|YP_002864905.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686671|ref|ZP_05150529.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724747|ref|ZP_05186530.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736996|ref|ZP_05194701.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254744175|ref|ZP_05201857.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254756050|ref|ZP_05208079.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761867|ref|ZP_05213716.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30253781|gb|AAP24323.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47500696|gb|AAT29372.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177229|gb|AAT52605.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712892|gb|EDR18421.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511900|gb|EDR87279.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530569|gb|EDR93284.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170125628|gb|EDS94551.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170666328|gb|EDT17116.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|190561444|gb|EDV15415.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195990454|gb|EDX54440.1| DNA-binding response regulator [Bacillus cereus W] gi|218535735|gb|ACK88133.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227007477|gb|ACP17220.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228815596|gb|EEM61837.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827890|gb|EEM73626.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229266767|gb|ACQ48404.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 237 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 15/162 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 63 IEVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFL 122 Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V SN + F + E L +E +L++ +N G+ KTQ Sbjct: 123 VLGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213 +F ++ D +E +N V HI KLRKK+ DP + K Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218 >gi|308174605|ref|YP_003921310.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307607469|emb|CBI43840.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|328554528|gb|AEB25020.1| two-component response regulator [Bacillus amyloliquefaciens TA208] gi|328912934|gb|AEB64530.1| two-component response regulator [Bacillus amyloliquefaciens LL3] Length = 239 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 71/140 (50%), Gaps = 14/140 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAE-------TGPIRVFSDGRDPEVQ 143 G DD + KP RE+ ARV AI RR +S+ R E G +++ + + + Sbjct: 96 GADDYMTKPFSPREVTARVKAILRRADISSLSQGREEEKDGKILIGELKILPEHYEAYFK 155 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 E L +E +L YL ++G+ + + + SA++ +D A + +V+ HIS LR K+ + Sbjct: 156 SEQLELTPKEFELLLYLGKHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIES 214 Query: 204 KLGFDPVDSK--RFLGYSID 221 P+ K R LGY ++ Sbjct: 215 NTK-KPIYIKTIRGLGYKLE 233 >gi|296111785|ref|YP_003622167.1| alkaline phosphatase synthesis transcriptional regulatory proteinPhoP [Leuconostoc kimchii IMSNU 11154] gi|295833317|gb|ADG41198.1| alkaline phosphatase synthesis transcriptional regulatory proteinPhoP [Leuconostoc kimchii IMSNU 11154] Length = 229 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 71/134 (52%), Gaps = 8/134 (5%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TGPIR----VFSDGRDPEVQGE-VF 147 G DD + KP RE++AR+ A+ RR +V ++ +E T I+ V D + + + + Sbjct: 95 GADDYITKPFSPREVIARLKAVLRRSQVDHHESERTDAIKIQNLVIDDNKKVVTKNDKIL 154 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLG 206 L RE +L Y G+ + + I +A++G ++ E +V+ HIS LR+K+ N Sbjct: 155 TLTPREYELLLYFSQRVGRVIDRETILTAVWG-YEFVGESRMVDMHISNLREKIETNPKS 213 Query: 207 FDPVDSKRFLGYSI 220 + + + R GY++ Sbjct: 214 PEVLKTVRGFGYTM 227 >gi|291556132|emb|CBL33249.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium siraeum V10Sc8a] Length = 235 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 34/242 (14%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 +++DD + D +DG ++ F N ++ + ++S D++ ++ L G + Sbjct: 5 ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGMDALKCIESQNL-DLAILDVMLPDIDGFR 63 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + + IR P+I ++ + G DD + KP + E++ARV RR Sbjct: 64 ICQK---IREQYYYPIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRY 120 Query: 120 KVSNNRAET----GPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 NN A T PI + + + G+ L E IL YL NRGK Sbjct: 121 VRYNNAANTEEKDAPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKV 180 Query: 168 VAKTQIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYS 219 ++ ++F I+G D N V +HI +LR+KL +P +F+ GY+ Sbjct: 181 ISSEELFENIWGEKFLD---NNNTVMAHIGRLREKLN-----EPAKKPKFIKTVWGVGYT 232 Query: 220 ID 221 I+ Sbjct: 233 IE 234 >gi|269961390|ref|ZP_06175755.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833941|gb|EEZ88035.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 221 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 9/161 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ R I P++ ++ + LD + +G D + KP + E+L R+ AI RR+ Sbjct: 61 MQVARRICQRFATPILMLTALNDENSMLDGYQAGADQYIGKPFNVSELLMRIKAILRRVG 120 Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R A ++ SD D PL E +L YL+ N+G ++K ++ + + Sbjct: 121 LERQRQAMCSTVQSISDQLDS------LPLTGTEAELLSYLVKNQGVVISKAELQTKVLK 174 Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219 + N ++ HIS +R+KL L + + R GYS Sbjct: 175 KELSPFDRN-LDMHISNIRRKLVEAGLSKQHIKTFRGKGYS 214 >gi|269139949|ref|YP_003296650.1| two-component transcriptional regulator, winged helix family [Edwardsiella tarda EIB202] gi|267985610|gb|ACY85439.1| two-component transcriptional regulator, winged helix family [Edwardsiella tarda EIB202] gi|304559784|gb|ADM42448.1| DNA-binding response regulator KdpE [Edwardsiella tarda FL6-60] Length = 229 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 18/164 (10%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E R +R S +P+I +S ++ D+G +D ++KP E+LARV RR Sbjct: 65 VEFIRDLRRWSAIPVIVLSARCDEADKVEALDAGAEDFLSKPFGVAELLARVRVALRR-- 122 Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + P+ F+D R +GE L E R+L L+AN GK + + Q+ Sbjct: 123 -HTRQQQESPLVCFADVQVDLLARSVTRRGERLHLTPIEFRLLAELIANSGKVLTQRQLL 181 Query: 175 SAIYGLFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216 S+++G N VE SH ++ LR KL +P + L Sbjct: 182 SSVWG-------PNYVEHSHYLRIYMGHLRQKLEAEPARPRHLL 218 >gi|253689341|ref|YP_003018531.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755919|gb|ACT13995.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 242 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 8/155 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S VP+I ++ L + G DD + KP RE++ RV Sbjct: 62 LMLPGCDGLTLCRTIRQFSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRV 121 Query: 113 AAIYRRLKVSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 + RR N+ + ET + + G G+ L E R+L+ L GK Sbjct: 122 RTLLRRCGWQNDGVKAIEKTETALV-IDKGGFQASYLGQNLDLTPAEFRLLKTLSTEPGK 180 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ + +Y + V + ++SHI LR+KL Sbjct: 181 VFSREALLDKLYDDY-RVVTDRTIDSHIKNLRRKL 214 >gi|284005671|ref|YP_003391491.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] gi|283820855|gb|ADB42692.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 226 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 2/152 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAE 127 AHS +I +S SL L + G DD + KP H E+ AR+ ++ RR + + Sbjct: 69 AHSSAGIIIVSAKNSLDDKLSGLELGADDYLTKPFHLPELNARIRSLMRRRQHAGETQLT 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE- 186 G I + + V + + +E +L ++ N+ + ++K I ++G + + ++ Sbjct: 129 CGAITIVPHRKQVLVANQPMDVTGKEYELLLFMATNKNRLLSKAIIVEHVWGDYMDGIDS 188 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + +H+ LR+KL + D + ++ GY Sbjct: 189 HDFLYTHVRNLRRKLLDAGSPDYITTRYGAGY 220 >gi|199599197|ref|ZP_03212599.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258507151|ref|YP_003169902.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258538344|ref|YP_003172843.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|199589878|gb|EDY97982.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257147078|emb|CAR86051.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257150020|emb|CAR88992.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|259648521|dbj|BAI40683.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 224 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 3/152 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRA 126 R +P++ I+ + + F+SG+DD + KPI+ E+L R+ A+ RR K++ +N Sbjct: 69 RTDPSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLRRAKITADNLL 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + ++ +V + + RE +IL L++ ++ ++ + + L + Sbjct: 129 IVGNLTLNNEAITAQVNHQTVDVTVREFQILYKLLSYPDHAFSRAELINEFWDLASDT-S 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ +I+KLR+K + GF + + LGY Sbjct: 188 MRAVDVYITKLREKFKAADGF-TIKTIHGLGY 218 >gi|168334754|ref|ZP_02692882.1| hypothetical protein Epulo_07020 [Epulopiscium sp. 'N.t. morphotype B'] Length = 222 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 1/159 (0%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I A VP+I +S ++ + D G +D + KP E+LAR+ A+ R+ + Sbjct: 63 LKKIRTAGMSVPVIILSAKSQIEDKIVGLDCGANDYLAKPFDAGELLARIRAMTRKATQN 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N G + + V LP +E +ILE LM+ + V+ ++ I+G ++ Sbjct: 123 NIFLMMGNATLNVANFELVVADGKIKLPNKEFQILEMLMSRKDAVVSVDKLAERIWG-YE 181 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V+ + +IS LRKKL + R +GY ++ Sbjct: 182 NEVDITTIWVYISNLRKKLVALSATVQIKVVRGVGYRME 220 >gi|152983575|ref|YP_001347907.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|150958733|gb|ABR80758.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 223 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 100/220 (45%), Gaps = 10/220 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D +A G G +++ +S D+ ++ L G+ L Sbjct: 3 LLLVEDHVPLADELLASLGRQGYAVDWLADGRDAALQGASEPYDLIILDLGLPGR--PGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R R P++ ++ S +D +G DD + KP H E+ R+ A+ RR Sbjct: 61 EILREWRGLGLATPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALRIQALLRRAH 120 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N++ E + + + + G L E R+L Y M + G+ ++K + +Y Sbjct: 121 GLANQSQLEAAGLSLDEQRQCVCLNGADVDLTAAEFRLLRYFMLHPGQVLSKGHLAEHLY 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E + NV+E H++ LR+ KLG + ++++R GY Sbjct: 181 DGETER-DSNVIEVHVNHLRR----KLGREVIETRRGQGY 215 >gi|58580831|ref|YP_199847.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425425|gb|AAW74462.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 246 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 5/167 (2%) Query: 57 GEKVLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G +E+ R +R A Q P++ ++ SL L FDSG DD + KP +E+ R+ A Sbjct: 77 GMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQEVEVRLNA 136 Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR K + R ETG + D + +G++ L +IL+ LM V + ++ Sbjct: 137 LSRRGKGVHTRVLETGDLEYNLDTLEVRRRGKLLQLNPTALKILQALMEASPAVVTRQEL 196 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G +E + + + HI LR + + ++ +GY I Sbjct: 197 ETRVWG--EELPDSDSLRVHIHGLRAVVDKPFDVAMIQTRHGIGYRI 241 >gi|87160864|ref|YP_493348.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194430|ref|YP_499224.1| hypothetical protein SAOUHSC_00665 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151220840|ref|YP_001331662.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|161508922|ref|YP_001574581.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140875|ref|ZP_03565368.1| response regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253731280|ref|ZP_04865445.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|262048402|ref|ZP_06021287.1| hypothetical protein SAD30_2129 [Staphylococcus aureus D30] gi|262051738|ref|ZP_06023956.1| hypothetical protein SA930_1821 [Staphylococcus aureus 930918-3] gi|282921949|ref|ZP_06329647.1| two-component system, OmpR family, response regulator [Staphylococcus aureus A9765] gi|284023681|ref|ZP_06378079.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 132] gi|294849329|ref|ZP_06790072.1| two-component system [Staphylococcus aureus A9754] gi|304381730|ref|ZP_07364378.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|122540052|sp|Q2G0E0|GRAR_STAA8 RecName: Full=Response regulator protein graR; AltName: Full=Glycopeptide resistance-associated protein R gi|123486900|sp|Q2FIY0|GRAR_STAA3 RecName: Full=Response regulator protein graR; AltName: Full=Glycopeptide resistance-associated protein R gi|205780168|sp|A6QEW8|GRAR_STAAE RecName: Full=Response regulator protein graR; AltName: Full=Glycopeptide resistance-associated protein R gi|205780252|sp|A8Z181|GRAR_STAAT RecName: Full=Response regulator protein graR; AltName: Full=Glycopeptide resistance-associated protein R gi|205784951|sp|Q5HI09|GRAR_STAAC RecName: Full=Response regulator protein graR; AltName: Full=Glycopeptide resistance-associated protein R gi|87126838|gb|ABD21352.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201988|gb|ABD29798.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373640|dbj|BAF66900.1| two-component DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|160367731|gb|ABX28702.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725021|gb|EES93750.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|259160349|gb|EEW45375.1| hypothetical protein SA930_1821 [Staphylococcus aureus 930918-3] gi|259163490|gb|EEW48047.1| hypothetical protein SAD30_2129 [Staphylococcus aureus D30] gi|269940236|emb|CBI48613.1| response regulator protein GraR [Staphylococcus aureus subsp. aureus TW20] gi|282593802|gb|EFB98793.1| two-component system, OmpR family, response regulator [Staphylococcus aureus A9765] gi|294823861|gb|EFG40287.1| two-component system [Staphylococcus aureus A9754] gi|300078700|gb|ADJ67248.1| GraR [Staphylococcus aureus] gi|300078703|gb|ADJ67250.1| GraR [Staphylococcus aureus] gi|300078706|gb|ADJ67252.1| GraR [Staphylococcus aureus] gi|302750557|gb|ADL64734.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339681|gb|EFM05627.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320140009|gb|EFW31870.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320141900|gb|EFW33728.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329313381|gb|AEB87794.1| Response regulator protein graR [Staphylococcus aureus subsp. aureus T0131] gi|329729913|gb|EGG66305.1| response regulator protein GraR [Staphylococcus aureus subsp. aureus 21189] Length = 224 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 7/159 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121 R +R S VP++ +S + + + G DD + KP + ++A++ AIYRR+ Sbjct: 64 RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R T V +D +G + L + E ILE L+ + + V++ I +A++ Sbjct: 124 EEKRTLTWQDAVVDLSKDSIQKGDQTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 182 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DEA V +N + ++++LRKKL +++K GY Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGY 220 >gi|15601853|ref|NP_233484.1| DNA-binding response regulator [Vibrio cholerae O1 biovar eltor str. N16961] gi|121728501|ref|ZP_01681525.1| DNA-binding response regulator [Vibrio cholerae V52] gi|147672339|ref|YP_001214980.1| DNA-binding response regulator [Vibrio cholerae O395] gi|153816730|ref|ZP_01969397.1| DNA-binding response regulator [Vibrio cholerae NCTC 8457] gi|153821227|ref|ZP_01973894.1| DNA-binding response regulator [Vibrio cholerae B33] gi|153827796|ref|ZP_01980463.1| DNA-binding response regulator [Vibrio cholerae 623-39] gi|227812668|ref|YP_002812678.1| DNA-binding response regulator [Vibrio cholerae M66-2] gi|254284724|ref|ZP_04959691.1| DNA-binding response regulator [Vibrio cholerae AM-19226] gi|254850261|ref|ZP_05239611.1| DNA-binding response regulator [Vibrio cholerae MO10] gi|262158660|ref|ZP_06029774.1| two-component system response regulator QseB [Vibrio cholerae INDRE 91/1] gi|298499864|ref|ZP_07009670.1| DNA-binding response regulator [Vibrio cholerae MAK 757] gi|9658551|gb|AAF96996.1| DNA-binding response regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121629219|gb|EAX61657.1| DNA-binding response regulator [Vibrio cholerae V52] gi|126512749|gb|EAZ75343.1| DNA-binding response regulator [Vibrio cholerae NCTC 8457] gi|126521286|gb|EAZ78509.1| DNA-binding response regulator [Vibrio cholerae B33] gi|146314722|gb|ABQ19262.1| DNA-binding response regulator [Vibrio cholerae O395] gi|148876641|gb|EDL74776.1| DNA-binding response regulator [Vibrio cholerae 623-39] gi|150425509|gb|EDN17285.1| DNA-binding response regulator [Vibrio cholerae AM-19226] gi|227011810|gb|ACP08021.1| DNA-binding response regulator [Vibrio cholerae M66-2] gi|227015746|gb|ACP11955.1| DNA-binding response regulator [Vibrio cholerae O395] gi|254845966|gb|EET24380.1| DNA-binding response regulator [Vibrio cholerae MO10] gi|262029540|gb|EEY48190.1| two-component system response regulator QseB [Vibrio cholerae INDRE 91/1] gi|297541845|gb|EFH77896.1| DNA-binding response regulator [Vibrio cholerae MAK 757] Length = 218 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I RA +P++ ++ + + D G D+ + KP E+LAR+ I RR S Sbjct: 63 LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 119 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE G + + ++ + L R E +IL LM G+ ++K + A++ Sbjct: 120 SGSAEELISVGELDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +DE +N +E HI LRKKL + L V + R +GY I+ Sbjct: 180 G-WDEGSSDNAIEVHIHNLRKKLPDNL----VKNVRGVGYMIE 217 >gi|326804184|ref|YP_004322002.1| putative response regulator protein GraR [Aerococcus urinae ACS-120-V-Col10a] gi|326651323|gb|AEA01506.1| putative response regulator protein GraR [Aerococcus urinae ACS-120-V-Col10a] Length = 245 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 86/164 (52%), Gaps = 12/164 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 ++IR S VP++ +S + + G DD V KP+ +LA++ A+ RR ++ Sbjct: 81 QMIRKDSDVPILFLSARDTSMDQVMAMQVGGDDYVTKPVDLPLLLAKIQALLRRAYRYSS 140 Query: 125 RAETGPIRVFSDGR-DPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +ET +F+ + DP QG+ L E IL+ L +G V++ + + Sbjct: 141 ASETF---IFAGVQLDPTKARLIYQGQASDLTATELLILKQLFQAQGDYVSRESLMEECW 197 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 L + +++N + +IS+LRKKL KLG D + +K+ +GY+++ Sbjct: 198 -LGENYIDDNTLAVNISRLRKKL-AKLGLEDFIKTKKRVGYALN 239 >gi|313829791|gb|EFS67505.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|315109590|gb|EFT81566.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] Length = 243 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 8/133 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146 +G DD V KP E++AR+ A+ RR + + ++ G + + D R+ GE Sbjct: 108 LTAGGDDYVTKPFSLEEVIARLRALLRRSGATEPKPDSMLTVGDLTLDEDSREVRRAGEE 167 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L E +L Y M N + ++K QI ++ +D + NVVE +IS LRKK+ G Sbjct: 168 IHLTTTEFELLRYFMRNPKRVLSKAQILDRVWN-YDFRGQANVVELYISYLRKKIDR--G 224 Query: 207 FDP-VDSKRFLGY 218 P + + R GY Sbjct: 225 HKPMIHTMRGAGY 237 >gi|241896075|ref|ZP_04783371.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241870675|gb|EER74426.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 239 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 19/179 (10%) Query: 58 EKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 E +++ R +RA +Q+P+I ++ + + G DD V KP RE++ARV A+ Sbjct: 58 ESGVDVTRELRAEKNQIPIIMLTALDDEIDKVVGLEIGADDYVTKPFSPREVIARVHAVL 117 Query: 117 RRL--KVSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RR K + ++ G + + D + GE+ L +E +L Y+ G+ Sbjct: 118 RRFSQKTQTEKEQSVKHSQSYGRLTIDFDKMVVQFDGEIVKLTPKEYELLAYMAEREGRV 177 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221 +++ I ++G + +V+ H+S LR+K+ DP + + R GY D Sbjct: 178 LSRETILDGVWGYEFSGPDTRMVDMHLS----HLRDKIELDPKHPVYLKTVRGFGYRFD 232 >gi|300773343|ref|ZP_07083212.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300759514|gb|EFK56341.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 224 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 4/151 (2%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G VL+ + Q +I IS +L + G DD + KP H E++AR+ A Sbjct: 57 GNGMHVLQTLK--EQEKQDGVIIISAKDALDDKIKGLQIGADDYLTKPFHLSELVARIYA 114 Query: 115 IYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR + N N +++ + V P ++E +L Y + N+ K ++K+ + Sbjct: 115 VIRRKQFQNSNIIVQNELQIDLLAKTVSVGDHAVPFTKKELDLLLYFIGNKNKVISKSTL 174 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRN 203 + G + D + + +HI L+KKL++ Sbjct: 175 AEHLSGDVADMLDNHDFIYAHIKNLKKKLQD 205 >gi|229830121|ref|ZP_04456190.1| hypothetical protein GCWU000342_02228 [Shuttleworthia satelles DSM 14600] gi|229791419|gb|EEP27533.1| hypothetical protein GCWU000342_02228 [Shuttleworthia satelles DSM 14600] Length = 223 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 4/148 (2%) Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E R IRA + P++ ++ ++ +D D+G DD + KP E+LAR+ ++ RR Sbjct: 60 VEALRQIRAGGDMTPILLLTAKAEVEDRIDGLDAGADDYLTKPFALGELLARIRSLTRRN 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + S + + + ++ Q + P +E ++LEYL+ N GK V+ QIF I+ Sbjct: 120 EDFSPKNLTIADVTLDVEQQEIRAQNAIRLAP-KEAKLLEYLLQNVGKDVSTEQIFERIW 178 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG 206 D+ + +V +IS LR+K G Sbjct: 179 K-DDQEADIGLVWVYISYLRQKFNAITG 205 >gi|229093633|ref|ZP_04224733.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-42] gi|228689720|gb|EEL43527.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-42] Length = 230 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 98/203 (48%), Gaps = 18/203 (8%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66 ++ LVK+G+ DG EG N+ +L+ S D+ ++ ++ K + LE+ RI Sbjct: 19 EKYLVKEGFQVTIASDGE--EGVNT-----YLKGSF--DLIILD-IMMPKLDG-LEVVRI 67 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNR 125 IR S VP++ +S + G DD + KP E+ ARV A I R K S Sbjct: 68 IREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKYSATE 127 Query: 126 AETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 I++ DP E +G+ L +E IL+ + N+ + K QI++ I+ Sbjct: 128 TTEKTIQIGDLTIDPINFTVEKKGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTLIWN- 186 Query: 181 FDEAVEENVVESHISKLRKKLRN 203 + ++NV+ H+ +LR+K+ + Sbjct: 187 EEYYGDDNVINVHMRRLREKIES 209 >gi|197106157|ref|YP_002131534.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] gi|196479577|gb|ACG79105.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] Length = 230 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 80/166 (48%), Gaps = 10/166 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAI 115 G VLE R R + P++ ++ + + FD+G DD + KP H E + A + Sbjct: 59 GVSVLE--RWRRENMATPVLILTARGAWSEKVAGFDAGADDYLTKPFHTEELLARLRALL 116 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + G +R+ V GE L E R+L YLM ++G+ +++T++ Sbjct: 117 RRSAGHATPNLSCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYLMMHQGRVISRTELVE 176 Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y FD + N +E I ++RK K+G D +++ R LGY + Sbjct: 177 HLYDQDFDR--DSNTIEVFIGRVRK----KIGADRIETVRGLGYRL 216 >gi|197118229|ref|YP_002138656.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197087589|gb|ACH38860.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 226 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 6/134 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPIRVFSDGRDPEVQGEVF 147 F+ G DD V KP RE+ RV A+ RR VS+ E GPI + +D V GE Sbjct: 94 FEVGADDYVVKPFSSRELNLRVKAVLRRSNTETVSSTMIELGPITIDTDRHQVMVNGEEI 153 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 E ++L L G+ ++ + ++G ++ + V++HI++LR K+ Sbjct: 154 FFTSTEFKLLHVLAQRLGRVQSRDVLLRDVWG-YNFVDDSRTVDTHITRLRTKM--GAAG 210 Query: 208 DPVDSKRFLGYSID 221 D + + R GY ++ Sbjct: 211 DLIKTVRGFGYKLE 224 >gi|148658695|ref|YP_001278900.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148570805|gb|ABQ92950.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 245 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 6/140 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP+I ++ + F+ G DD + KP E++ARV AI RR++ +R Sbjct: 84 IRERSDVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRRVEGYKHRV 143 Query: 127 ETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +RV D V+G+ L E +L +L AN G + +F ++G + Sbjct: 144 APPVVRVGEIEIDEPRHRVTVRGKEVNLTPMEFELLYFLAANAGHVFDRETLFREVWG-Y 202 Query: 182 DEAVEENVVESHISKLRKKL 201 D E N+V+ + +LR+K+ Sbjct: 203 DYVGETNLVDVCVRRLREKV 222 >gi|28798044|emb|CAD69002.1| beta-lactamase response regulator [Aeromonas hydrophila] Length = 224 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 11/222 (4%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 L++D A + D I DG +E F+ + R D ++ L EL Sbjct: 8 LVEDEASIADTLIYALQTDGFEVEWFSLGQPLLARLEQTRPDFLILDVGLPDISG--FEL 65 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 + +RA PL+ ++ L + G DD V KP RE+ ARV I RR + + Sbjct: 66 CKQVRALCDTPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREVRARVRVILRRSQPTT 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + + + G+ L R E +L+ LM G+ ++ Q+ ++ E Sbjct: 126 P-PPSQLLALDEERARISFHGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWSAAGE 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221 +++ V++HI +R KLR + DP + + R GYS++ Sbjct: 185 SLDRT-VDTHIKTIRAKLRER---DPHANLILTHRGFGYSLE 222 >gi|49078508|gb|AAT49792.1| PA2657 [synthetic construct] Length = 224 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 7/148 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGP 130 P++ ++ S +D +G DD + KP H E+ + A+ RR N++ E Sbjct: 73 TPVLILTARGSWAERIDGLKAGADDYLTKPFHPEELALHIQALLRRAHGLANQSQLEAAG 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 +R+ + + G L E R+L Y M + G+ ++K + +Y E + NV+ Sbjct: 133 LRLDEQRQCVCLNGADVDLTAAEFRLLRYFMLHPGQVLSKGHLAEHLYDGETER-DSNVI 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E H++ LR+ KLG + ++++R GY Sbjct: 192 EVHVNHLRR----KLGREVIETRRGQGY 215 >gi|82751281|ref|YP_417022.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus RF122] gi|258424109|ref|ZP_05686991.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus A9635] gi|282916953|ref|ZP_06324711.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus D139] gi|283770757|ref|ZP_06343649.1| two-component system OmpR family alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus H19] gi|82656812|emb|CAI81241.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus RF122] gi|257845730|gb|EEV69762.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus A9635] gi|282319440|gb|EFB49792.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus D139] gi|283460904|gb|EFC07994.1| two-component system OmpR family alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus H19] gi|298694963|gb|ADI98185.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus ED133] gi|302333358|gb|ADL23551.1| response regulator OmpR [Staphylococcus aureus subsp. aureus JKD6159] gi|323440763|gb|EGA98472.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus O11] gi|323442918|gb|EGB00541.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus O46] Length = 234 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE------TGPIRVFSDGRDPEVQGEVF 147 G DD + KP RE++ARV AI RR + E G IR+ D + E+ Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRSQFVKEVEEIDDDITIGSIRIRPDYFEVYKHNELL 155 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLG 206 L +E +L YL+ +G+ + + + + ++ ++ A + +V+ HIS LR KL N Sbjct: 156 ELTPKEFELLLYLIERQGRVITREHMLNTVWN-YEFAGDSRIVDVHISHLRDKLEDNPKK 214 Query: 207 FDPVDSKRFLGYSID 221 + + R LGY ++ Sbjct: 215 PQLIKTVRGLGYKLE 229 >gi|238788573|ref|ZP_04632366.1| Two component heavy metal response transcriptional regulator, winged helix family [Yersinia frederiksenii ATCC 33641] gi|238723486|gb|EEQ15133.1| Two component heavy metal response transcriptional regulator, winged helix family [Yersinia frederiksenii ATCC 33641] Length = 235 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 14/163 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +RA Q P++ +S ++ + SG DD + KP E++AR+ A++RR+ NN Sbjct: 66 LRAEKQTPVLMLSARSTVDERVRGLRSGADDYLPKPFSLIELVARIQALHRRMSKDNN-- 123 Query: 127 ETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 P + D R G L +E +L L ++GK ++K I ++ Sbjct: 124 --DPTHILIDDLQLDLIARKVSRGGIRIDLTAKEFSLLSLLARHQGKILSKMMIADEVWD 181 Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + FD + NVVE I +LR K+ + + R +GY ++ Sbjct: 182 MNFDS--DANVVEVAIKRLRNKIDTPYAVKLLYTVRGMGYVLE 222 >gi|116628066|ref|YP_820685.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|116101343|gb|ABJ66489.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] gi|312278662|gb|ADQ63319.1| Two-component response transcriptional regulator (CheY-like receiver and winged-helix DNA-binding domains), putative [Streptococcus thermophilus ND03] Length = 226 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP +LA++ + RR Sbjct: 67 IRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQ 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + D QGEV L + E +IL+ L G V++ + ++ D Sbjct: 127 SLLEYMGVILNLKAMDLVYQGEVVSLTKNEFQILQVLFERSGNIVSREDLMKELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL D +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGL 222 >gi|329769297|ref|ZP_08260713.1| transcriptional regulatory protein walR [Gemella sanguinis M325] gi|328839100|gb|EGF88685.1| transcriptional regulatory protein walR [Gemella sanguinis M325] Length = 233 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 54/223 (24%), Positives = 99/223 (44%), Gaps = 21/223 (9%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66 D L K+GY + +DG E+ ++ + ED I L+ + +E+ R Sbjct: 20 DFNLRKEGYDVIVANDG-----------EKAVKLAFSEDPDLILLDLMLPEKDGMEVCRE 68 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +RA +P+I ++ S + + G DD V KP RE++ARV RR+ Sbjct: 69 VRAQKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVAKQTEVV 128 Query: 127 E--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E I ++ + + GE L RRE + YL +RG+ + + + ++ Sbjct: 129 EEKNTSEVVIKDIVIYPEAYIIKKNGEEVDLTRREFDLFYYLAQHRGQVLTRENLLQTVW 188 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 G +D + V+ + +LR+K+ + + ++R +GY I Sbjct: 189 G-YDYFGDVRTVDVTVRRLREKVETDSSQPEYIMTRRGVGYFI 230 >gi|325529261|gb|EGD06214.1| DNA-binding response regulator CreB [Burkholderia sp. TJI49] Length = 235 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 17/173 (9%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ + + G DD V KP RE+ ARV I RRL Sbjct: 64 EVCRRLRTFSDVPVIFLTARHDEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRLNR 123 Query: 122 SNN-----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 S N A + ++G G L R E +L L+ + G+ ++ Sbjct: 124 SPNAGQAGAPAAAAAAVAPGFELDAEGARLSWLGHALDLTRYEFGLLALLVRHPGRIYSR 183 Query: 171 TQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 Q+ ++ EA+E + V++H+ LR KLR G DP+ + R +GYS+ Sbjct: 184 EQLMDLVW---HEALESADRTVDTHVKTLRAKLRAIDPGRDPIRTHRGMGYSL 233 >gi|315618142|gb|EFU98733.1| transcriptional regulatory protein baeR [Escherichia coli 3431] Length = 240 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 8/156 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167 I RR K + AE+ P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ + + +Y + V + ++SHI LR+KL + Sbjct: 180 FSREHLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|307325774|ref|ZP_07604974.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306888562|gb|EFN19548.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 4/134 (2%) Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVF 147 D D G DD + KP + + AR+ A+ RR + G + + GR G Sbjct: 89 DGLDIGADDYLTKPFSYVVLTARLHALIRRGHIPRPPVLSVGDLLLDPGGRTCVRAGTPI 148 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLG 206 L RE +LEYL+ + G+ V+K +I + ++ FD ++ NVVE +I LR+K+ Sbjct: 149 ELTTREFSLLEYLVRHEGQVVSKQEILTHVWAEHFD--LDPNVVEVYIGYLRRKIDTPFR 206 Query: 207 FDPVDSKRFLGYSI 220 +++ R GY + Sbjct: 207 VRSIETVRGAGYRL 220 >gi|300917087|ref|ZP_07133778.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300415654|gb|EFJ98964.1| response regulator receiver domain protein [Escherichia coli MS 115-1] Length = 240 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 8/156 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167 I RR K + AE+ P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ + + +Y + V + ++SHI LR+KL + Sbjct: 180 FSREHLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|289425716|ref|ZP_06427471.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289153822|gb|EFD02528.1| response regulator receiver domain protein [Propionibacterium acnes SK187] Length = 243 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 8/133 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146 +G DD V KP E++AR+ A+ RR + + ++ G + + D R+ GE Sbjct: 108 LTAGGDDYVTKPFSLEEVIARLRALLRRSGATEPKPDSMLTVGDLTLDEDSREVRRAGEE 167 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L E +L Y M N + ++K QI ++ +D + NVVE +IS LRKK+ G Sbjct: 168 IHLTTTEFELLRYFMRNPKRVLSKAQILDRVWN-YDFRGQANVVELYISYLRKKIDR--G 224 Query: 207 FDP-VDSKRFLGY 218 P + + R GY Sbjct: 225 HKPMIHTMRGAGY 237 >gi|225375516|ref|ZP_03752737.1| hypothetical protein ROSEINA2194_01141 [Roseburia inulinivorans DSM 16841] gi|225212651|gb|EEG95005.1| hypothetical protein ROSEINA2194_01141 [Roseburia inulinivorans DSM 16841] Length = 220 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 14/144 (9%) Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-------NRAETGPIRVFSDG 137 T + FD G +D + KP RE+LARV RR+ +N N G + +D Sbjct: 84 NTIVRAFDEGAEDYIVKPFRIRELLARV----RRILSANIKNGEKDNIIYMGHAAIHTDE 139 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 V ++ L E R+L +N+G + + QI I+ VE+N + ++ +L Sbjct: 140 AKVYVNDKIIELTALEYRLLLIFASNKGILLTRQQILDKIWDADGNFVEDNTLTVYVKRL 199 Query: 198 RKKLRNKLGFDPVDSKRFLGYSID 221 R+KL + + V R +GY +D Sbjct: 200 REKLGEAIHIETV---RGMGYRVD 220 >gi|239629508|ref|ZP_04672539.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239528194|gb|EEQ67195.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 232 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 4/155 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA + VP+I ++ + + + +G DD V KP E+ AR+ A +RR RA Sbjct: 75 IRAITSVPIIFLTARVTDEDKVRGLGAGGDDYVTKPFSLAELGARIKAHFRRESQPQKRA 134 Query: 127 ETGPI-RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 ++ D R +V +V L +++ +++E L N G+ ++ Q++ I+G +D Sbjct: 135 RMAIFDQILIDYRAKQVSIGDQVLSLEKKQYQLVELLSLNPGQVFSREQLYEKIWG-YDA 193 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ V+ HI ++R P+++ +GY Sbjct: 194 LGDDRVITEHIRRIRLLFDRYQVTSPIETVWGVGY 228 >gi|212637427|ref|YP_002313952.1| transcriptional regulatory protein [Shewanella piezotolerans WP3] gi|212558911|gb|ACJ31365.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 245 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 5/132 (3%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVF 147 +SG DD + KP E+ ARV A+ RR + + E I + + R+ E Sbjct: 104 LESGADDYLVKPFSVLELRARVKALLRRGTQIAHQDESLEFNGISINCNTREVIAFNETL 163 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLG 206 L RE +L YL + + ++ Q+ A++G + + E+ V SHI++LR KL RN Sbjct: 164 ELTAREFDLLLYLAQHPKQVFSRMQLLEAVWG-YSYSGYEHTVNSHINRLRNKLARNACT 222 Query: 207 FDPVDSKRFLGY 218 D V + +GY Sbjct: 223 TDLVKTVWGVGY 234 >gi|220909111|ref|YP_002484422.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219865722|gb|ACL46061.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 263 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 7/137 (5%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128 S +P++ ++ Q ++ F++G DD + KP E+LARV A+ RR A+ Sbjct: 75 SAIPILMLTALSQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALLRRTDRIPQAAKHSE 134 Query: 129 ----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 GP+ + + + +V L R E +L L+ G+ VA ++I ++G +D Sbjct: 135 ILSYGPLTLIPERFEVVWLDKVIKLTRLEFELLHCLLQRHGQTVAPSEILKEVWG-YDPD 193 Query: 185 VEENVVESHISKLRKKL 201 + + H+ LR KL Sbjct: 194 DDIETIRVHVRHLRTKL 210 >gi|149002911|ref|ZP_01827822.1| response regulator [Streptococcus pneumoniae SP14-BS69] gi|147758914|gb|EDK65909.1| response regulator [Streptococcus pneumoniae SP14-BS69] Length = 158 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 11/120 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLK----------VSNNRAETGPIRVFSDGRDPEVQ 143 G DD + KP RE+LARV A+ RR K ++++ G ++V+ + + Sbjct: 19 GADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNIADDSWLFGTLKVYPERHEVYKA 78 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ L +E +L YLM + + + ++ I+G +D E +V+ HI KLR+K+ + Sbjct: 79 NKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKIED 137 >gi|86751280|ref|YP_487776.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86574308|gb|ABD08865.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] Length = 241 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 11/150 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE +L R IR S VP++ ++ + ++ G DD V KP RE+L R+ I Sbjct: 74 GETGFDLARFIRTESDVPIVMLTARHEAEARIEGLQLGADDYVAKPFEPRELLLRICNIL 133 Query: 117 RRLK-VSNNRAET---GPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKT 171 +R ++AET GP VF R QG E L RER +L L A G+ V + Sbjct: 134 KRTSPAPASKAETIAFGPY-VFHIDRGELRQGDETIHLTDRERDMLRVLAAAPGETVPRG 192 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ E V+ I++LR+K+ Sbjct: 193 ELTGG-----GGNANERAVDVQINRLRRKI 217 >gi|15924683|ref|NP_372217.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927271|ref|NP_374804.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus N315] gi|57650564|ref|YP_186577.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus COL] gi|87162022|ref|YP_494334.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195500|ref|YP_500304.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268173|ref|YP_001247116.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394240|ref|YP_001316915.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus JH1] gi|151221798|ref|YP_001332620.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156980010|ref|YP_001442269.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu3] gi|161509907|ref|YP_001575566.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142557|ref|ZP_03567050.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253317163|ref|ZP_04840376.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732344|ref|ZP_04866509.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734523|ref|ZP_04868688.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255006477|ref|ZP_05145078.2| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794078|ref|ZP_05643057.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A9781] gi|258415782|ref|ZP_05682053.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A9763] gi|258421981|ref|ZP_05684901.1| response regulator receiver [Staphylococcus aureus A9719] gi|258438261|ref|ZP_05689545.1| response regulator receiver [Staphylococcus aureus A9299] gi|258443719|ref|ZP_05692058.1| response regulator receiver [Staphylococcus aureus A8115] gi|258445930|ref|ZP_05694106.1| response regulator [Staphylococcus aureus A6300] gi|258448389|ref|ZP_05696506.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A6224] gi|258451793|ref|ZP_05699815.1| two component transcriptional regulator [Staphylococcus aureus A5948] gi|258454130|ref|ZP_05702101.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A5937] gi|262048663|ref|ZP_06021546.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus D30] gi|262052264|ref|ZP_06024469.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus 930918-3] gi|269203311|ref|YP_003282580.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus ED98] gi|282893188|ref|ZP_06301422.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus A8117] gi|282920233|ref|ZP_06327958.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A9765] gi|282927823|ref|ZP_06335434.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus A10102] gi|284024741|ref|ZP_06379139.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 132] gi|294848714|ref|ZP_06789460.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A9754] gi|295406003|ref|ZP_06815811.1| two-component system [Staphylococcus aureus A8819] gi|296274880|ref|ZP_06857387.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MR1] gi|297245071|ref|ZP_06928948.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A8796] gi|304380716|ref|ZP_07363385.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13701489|dbj|BAB42783.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus N315] gi|14247465|dbj|BAB57855.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu50] gi|57284750|gb|AAW36844.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus COL] gi|87127996|gb|ABD22510.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203058|gb|ABD30868.1| two-component response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741242|gb|ABQ49540.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149946692|gb|ABR52628.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374598|dbj|BAF67858.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722145|dbj|BAF78562.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368716|gb|ABX29687.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253723866|gb|EES92595.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727464|gb|EES96193.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257788050|gb|EEV26390.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A9781] gi|257839375|gb|EEV63848.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A9763] gi|257842025|gb|EEV66454.1| response regulator receiver [Staphylococcus aureus A9719] gi|257848305|gb|EEV72296.1| response regulator receiver [Staphylococcus aureus A9299] gi|257851125|gb|EEV75068.1| response regulator receiver [Staphylococcus aureus A8115] gi|257855172|gb|EEV78111.1| response regulator [Staphylococcus aureus A6300] gi|257858357|gb|EEV81242.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A6224] gi|257860505|gb|EEV83331.1| two component transcriptional regulator [Staphylococcus aureus A5948] gi|257863582|gb|EEV86339.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A5937] gi|259159865|gb|EEW44904.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus 930918-3] gi|259163310|gb|EEW47869.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus D30] gi|262075601|gb|ACY11574.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus ED98] gi|269941173|emb|CBI49560.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus TW20] gi|282590333|gb|EFB95412.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus A10102] gi|282594581|gb|EFB99566.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A9765] gi|282764506|gb|EFC04632.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus A8117] gi|285817376|gb|ADC37863.1| Alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus 04-02981] gi|294824740|gb|EFG41163.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A9754] gi|294969000|gb|EFG45021.1| two-component system [Staphylococcus aureus A8819] gi|297178151|gb|EFH37399.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A8796] gi|302751519|gb|ADL65696.1| response regulator OmpR [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340715|gb|EFM06646.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312830071|emb|CBX34913.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130673|gb|EFT86659.1| response regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315198610|gb|EFU28938.1| response regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320140428|gb|EFW32282.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143967|gb|EFW35736.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329314365|gb|AEB88778.1| Two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus T0131] gi|329727125|gb|EGG63581.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus 21172] gi|329728426|gb|EGG64863.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus 21189] gi|329733213|gb|EGG69550.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus 21193] Length = 234 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE------TGPIRVFSDGRDPEVQGEVF 147 G DD + KP RE++ARV AI RR + E G IR+ D + E+ Sbjct: 96 GADDYMTKPFSPREVVARVKAILRRSQFVKEVEEIDDDITIGSIRIRPDYFEVYKHNELL 155 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLG 206 L +E +L YL+ +G+ + + + + ++ ++ A + +V+ HIS LR KL N Sbjct: 156 ELTPKEFELLLYLIERQGRVITREHMLNTVWN-YEFAGDSRIVDVHISHLRDKLEDNPKK 214 Query: 207 FDPVDSKRFLGYSID 221 + + R LGY ++ Sbjct: 215 PQLIKTVRGLGYKLE 229 >gi|331005376|ref|ZP_08328760.1| putative two-component response regulator transcription regulator protein [gamma proteobacterium IMCC1989] gi|330420830|gb|EGG95112.1| putative two-component response regulator transcription regulator protein [gamma proteobacterium IMCC1989] Length = 236 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 52/227 (22%), Positives = 106/227 (46%), Gaps = 24/227 (10%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L +GY +DG + G + E + + +A + + ++ + LE+ + + Sbjct: 18 RGLKAEGYQTELAEDGATGLGL-ARELHKAFRDNAEKSLVILDIMM--PEMNGLEVCQQL 74 Query: 68 RAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118 RA +P++ ++ + +G DD + KP E+LAR+ + RR Sbjct: 75 RAEGFPLPILMLTALNDTDDRVTGLRTGADDYLGKPFDFEELLARIEGLARRGLVAPDKQ 134 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 L V++ + +RVF D E+ L +E +LE +M + G+ ++ +I Sbjct: 135 RAKQLSVADLHLDLDSMRVFRG--DEEIS-----LTAKELALLELMMRSVGRLFSRERIL 187 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 S ++GL ++ + N+V+ +I +LR K+ + ++R LGY ++ Sbjct: 188 SNVWGLNEDPL-TNIVDVYIRRLRNKIDTDNKPQLIHTQRGLGYRLE 233 >gi|295107250|emb|CBL04793.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 230 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 74/162 (45%), Gaps = 5/162 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R H P++ ++ L+ F G DD V KP + ARV A R + Sbjct: 66 FEVCRRLREHLTCPILFLTARVEDVDALEGFACGADDYVLKPFSLAVLGARVDAHLARDQ 125 Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 RAE G + V R V G L RRE I+ +L + G+ + +I + Sbjct: 126 CQQVRAEVRFDGDLAVDYRTRTVTVAGAPVELTRREFDIVAFLSKHPGQVFDRDRIHERV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGY 218 G +E+ + VV HI ++RKKL DPV++ +GY Sbjct: 186 GGWENES-DSQVVTEHIRRIRKKLAAAGTEHDPVETVWGMGY 226 >gi|257868543|ref|ZP_05648196.1| response regulator [Enterococcus gallinarum EG2] gi|257802707|gb|EEV31529.1| response regulator [Enterococcus gallinarum EG2] Length = 231 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 17/169 (10%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +EL +IIR VPLI IS + + D G DD V KP E+LAR+ +R Sbjct: 65 MELLKIIRKRMAVPLIVISARSNESEKVKALDLGADDYVTKPFGMNELLARIRTAFR--- 121 Query: 121 VSNNRAETGPIRVFSDGR---DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + E P+ V +G D E Q G L + E RIL L + GK V Sbjct: 122 --HRKQEPMPL-VIKNGELTLDTERQLLTKAGTEIHLTKNEYRILTVLFQHLGKVVTYQT 178 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + ++G + + V+ ++S +RKK+ N + + + ++ LGY + Sbjct: 179 LATEVWGPY--GTDPQVLRVNMSNIRKKIETNTISPEYLITEIGLGYRL 225 >gi|261820614|ref|YP_003258720.1| BaeR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261604627|gb|ACX87113.1| two component transcriptional regulator, winged helix family [Pectobacterium wasabiae WPP163] Length = 242 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 11/172 (6%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 EW++ + S I L+ G L + R IR S VP+I ++ L + G Sbjct: 48 EWVRQHSP---SLILLDLMLPGCDGLTICRTIRQFSNVPIIMVTARSEEIDRLLGLEIGA 104 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNN------RAETGPIRVFSDGRDPEVQGEVFPL 149 DD + KP RE++ RV + RR N+ ++ET + + G G+ L Sbjct: 105 DDYICKPFSPREVVVRVRTLLRRCGWQNDGMKAAEKSETA-LLIDKSGFQASYLGQNLDL 163 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E R+L+ L GK ++ + +Y + V + ++SHI LR+KL Sbjct: 164 TPAEFRLLKTLSTEPGKVFSREALLDKLYDDY-RVVTDRTIDSHIKNLRRKL 214 >gi|212691246|ref|ZP_03299374.1| hypothetical protein BACDOR_00737 [Bacteroides dorei DSM 17855] gi|237712324|ref|ZP_04542805.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|237726460|ref|ZP_04556941.1| two-component system response regulator [Bacteroides sp. D4] gi|265752033|ref|ZP_06087826.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] gi|212666478|gb|EEB27050.1| hypothetical protein BACDOR_00737 [Bacteroides dorei DSM 17855] gi|229434986|gb|EEO45063.1| two-component system response regulator [Bacteroides dorei 5_1_36/D4] gi|229453645|gb|EEO59366.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA] gi|263236825|gb|EEZ22295.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA] Length = 229 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 78/151 (51%), Gaps = 8/151 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G K+ + + +A + +P+I I+ + T+ F+ G DD ++KP RE++ARV A+ Sbjct: 61 GFKMANMLKKNKATASIPIIFITAKDTENDTVTGFNLGADDYISKPFSLREVIARVKAVL 120 Query: 117 RRL-----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR K + + + V + + G L ++E IL L+ N+G+ ++ Sbjct: 121 RRTSPTQGKEVQEQLQYKGLLVDITKKKVSIDGIEISLTKKEFEILLLLLQNKGRVFSRE 180 Query: 172 QIFSAIYGLFDEA-VEENVVESHISKLRKKL 201 I + ++ +E V + ++ +I++LRKK+ Sbjct: 181 DILAKVWQ--EEVYVLDRTIDVNITRLRKKI 209 >gi|146338490|ref|YP_001203538.1| OmpR family two component response transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146191296|emb|CAL75301.1| putative two-component response regulator (OmpR family) [Bradyrhizobium sp. ORS278] Length = 221 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 78/150 (52%), Gaps = 4/150 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 + P++ ++ ++ + D G DD + KP +RE+ AR A+ RR S+N GP Sbjct: 72 RTPVLVLTARSAVDDRIGALDLGADDYLIKPFDYRELEARARALLRRAAGQSDNLLTLGP 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + GR V G+ L RRE +LE L A G+ VAK ++ ++ FD+ N V Sbjct: 132 LVIDRAGRTASVAGQPLDLTRRELTVLEILAARPGRYVAKEELVEQLFS-FDQDPSPNAV 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E I++LR+KL + ++R LGY + Sbjct: 191 EQFIARLRRKLAAT--SVEIKTERGLGYQL 218 >gi|146300629|ref|YP_001195220.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146155047|gb|ABQ05901.1| two component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 220 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 3/159 (1%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+L + IR + P+I ++ ++Q T++ +G +D + KP E++ RV I+ R Sbjct: 60 LDLCKAIRIKDKKTPIIFLTAKDTVQETIEGLRAGANDYIKKPFSFEELVERV-KIHFRN 118 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K ++ G I V E L +RE +L YL+ +GK + +I ++ Sbjct: 119 KATDEILTLGNITVDLSKHIVLKNDEEINLTQREFELLTYLIRKKGKVCTRNEILKDVWD 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + E + V++ ++ +RKKL K+ D + + R +GY Sbjct: 179 INFEY-DTGVIDVFMNAIRKKLNLKIEEDYIKTIRGIGY 216 >gi|15893941|ref|NP_347290.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023528|gb|AAK78630.1|AE007581_1 Response regulator (CheY-like receiver domain and HTH DNA binding domain) [Clostridium acetobutylicum ATCC 824] gi|325508068|gb|ADZ19704.1| Response regulator (CheY-like receiver domain and HTH DNA binding domain) [Clostridium acetobutylicum EA 2018] Length = 221 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 2/131 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 DSG DD + KP +E+ AR+ A+ RR +N + + + + + +V ++ L Sbjct: 91 LDSGADDYLGKPFEFKELRARLHALIRRNYNKPSNEIKIKDLNIDTKAKSVKVGEKLITL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 RE ILE L N V+ +I ++G D NV+ HI+ LR+K++ G Sbjct: 151 TAREYDILELLCYNYPNIVSAEEIIEHVWGDNDNQF-SNVIRVHIANLRRKIKCSGGETL 209 Query: 210 VDSKRFLGYSI 220 +++ + GY + Sbjct: 210 IETLKGKGYRL 220 >gi|56751699|ref|YP_172400.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] gi|81301225|ref|YP_401433.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56686658|dbj|BAD79880.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] gi|81170106|gb|ABB58446.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 255 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 10/147 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R S VP+I +S + + D G DD + KP +E+ AR+A I RRL S N Sbjct: 77 RELRKLSDVPIIMLSALGDIADRITGLDLGADDYLPKPFSPKELEARIATILRRLDDSPN 136 Query: 125 --RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 A + P + + ++ R +GE PL E +LE L G+ V + +I Sbjct: 137 ALSAPSSPGVLRISDVEIDTNRRQVFQRGERVPLTYTEFSLLELLFRQPGRVVPRAEILE 196 Query: 176 AIYGLFD-EAVEENVVESHISKLRKKL 201 ++G + VV+ ++++LR KL Sbjct: 197 ELWGYPPRRNADLRVVDVYVARLRSKL 223 >gi|31792171|ref|NP_854664.1| two component response transcriptional regulatory protein MprA [Mycobacterium bovis AF2122/97] gi|121636908|ref|YP_977131.1| two component response transcriptional regulatory protein MprA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215426257|ref|ZP_03424176.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T92] gi|215429841|ref|ZP_03427760.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] gi|219556849|ref|ZP_03535925.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T17] gi|224989380|ref|YP_002644067.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|260185890|ref|ZP_05763364.1| mycobacterial persistence regulator [Mycobacterium tuberculosis CPHL_A] gi|260200008|ref|ZP_05767499.1| mycobacterial persistence regulator [Mycobacterium tuberculosis T46] gi|260204195|ref|ZP_05771686.1| mycobacterial persistence regulator [Mycobacterium tuberculosis K85] gi|260204198|ref|ZP_05771689.1| mycobacterial persistence regulator [Mycobacterium tuberculosis K85] gi|289442401|ref|ZP_06432145.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T46] gi|289446562|ref|ZP_06436306.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis CPHL_A] gi|289568958|ref|ZP_06449185.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T17] gi|289573617|ref|ZP_06453844.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis K85] gi|289573619|ref|ZP_06453846.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis K85] gi|289749508|ref|ZP_06508886.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T92] gi|289753038|ref|ZP_06512416.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] gi|81712139|sp|Q7U0X4|MPRA_MYCBO RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012448|sp|A1KHB7|MPRA_MYCBP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|29468250|gb|AAO85468.1| MprA [Mycobacterium bovis BCG] gi|31617759|emb|CAD93868.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium bovis AF2122/97] gi|121492555|emb|CAL71023.1| Mycobacterial persistence regulator mrpA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772493|dbj|BAH25299.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|289415320|gb|EFD12560.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T46] gi|289419520|gb|EFD16721.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis CPHL_A] gi|289538048|gb|EFD42626.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis K85] gi|289538050|gb|EFD42628.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis K85] gi|289542712|gb|EFD46360.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T17] gi|289690095|gb|EFD57524.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T92] gi|289693625|gb|EFD61054.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] Length = 230 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 10/147 (6%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R+ +P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR Sbjct: 62 LEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQI 173 K + AE+ +R FSD V EV L R E +LE L+AN + + +++I Sbjct: 122 K-PEDAAESMAMR-FSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRI 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK 200 ++G FD N +E ++ LR+K Sbjct: 180 LEEVWG-FDFPTSGNALEVYVGYLRRK 205 >gi|17545262|ref|NP_518664.1| response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17427553|emb|CAD14071.1| probable response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 246 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 15/171 (8%) Query: 61 LELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++L ++R+ Q +P++ ++ + + G DD + KP H E+ ARV A+ RR Sbjct: 60 IDLLSVVRSRHQEVLPILFVTAEARERGLVRALGQGADDYITKPFHIPELRARVEALLRR 119 Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + GP R + G L E ++ L AN G+ +++ IF Sbjct: 120 AHPVPYAGMPFAVGPYYFHPQRRLVTLHGAPLALTGIEFQLAMLLFANAGRTLSRDHIFG 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL-----GYSID 221 ++G + A ++SH+S++R KLR +PV+ R + GY +D Sbjct: 180 QVWGR-NSAEYTRTIDSHVSRIRLKLR----LEPVNEVRLVAVYKHGYRLD 225 >gi|119714578|ref|YP_921543.1| response regulator receiver [Nocardioides sp. JS614] gi|119535239|gb|ABL79856.1| response regulator receiver [Nocardioides sp. JS614] Length = 233 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 15/187 (8%) Query: 27 EGFNSLEFEEWLQSSARE-----DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 +GF + L++ AR DV ++ L G +E+ R +R S ++ ++ Sbjct: 26 DGFAVTIVHDGLEAVARSREVDPDVVVLDLGL--PGLDGVEVCRRLRTFSDGYVVMLTAR 83 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSD---- 136 TL G DD + KP RE++ARV A+ RR + + + A+ G F D Sbjct: 84 SDEVDTLIGLSVGADDYLTKPFSPRELVARVQAMLRRPRPLGHMDADAGEALSFGDLTIE 143 Query: 137 --GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 GRD ++ PL R E +L L G ++ Q+ A++G +E++V+ H+ Sbjct: 144 LAGRDVWLEDRAVPLTRTEFDLLATLAQRPGMAFSRRQLIDAVWGPA-WVGDEHLVDVHV 202 Query: 195 SKLRKKL 201 LR KL Sbjct: 203 GHLRHKL 209 >gi|163848057|ref|YP_001636101.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525947|ref|YP_002570418.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669346|gb|ABY35712.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449826|gb|ACM54092.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 225 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 101/210 (48%), Gaps = 10/210 (4%) Query: 16 IALFGDDGVSLEGFN-SLEFEEW----LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70 IA F G+SLEG+ + F+ L S+ D+ ++ L G LE+ R +RA Sbjct: 13 IASFLRRGLSLEGYQVDVAFDGTRGLELASTGTYDLIVLDLML--PGIDGLEVARRLRAD 70 Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAET 128 S VP+I ++ +++ + ++G DD + KP E+LAR+ A RR + + + Sbjct: 71 SNVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRRRQSGQAQDVLRF 130 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 + + + R+ V L +E +LE M + + + + I+ ++ +D E N Sbjct: 131 ANLTLDTRSRELRVGDRRVELTAKEYDLLELFMRHPNQVLTRDIIYDRVWN-YDFGGESN 189 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++E ++ LR+KL + + R +GY Sbjct: 190 ILEVYVRYLRQKLEANGEPRLIHTVRSVGY 219 >gi|330685760|gb|EGG97395.1| response regulator protein GraR [Staphylococcus epidermidis VCU121] Length = 198 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 84/160 (52%), Gaps = 9/160 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---V 121 R +R S VP++ +S + + + G DD + KP + ++A++ A+YRR+ V Sbjct: 38 RKMRQVSNVPILFLSSRDNPMDQVMSMELGADDYIQKPFYTNVLIAKLQAVYRRVYEFGV 97 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R V +D +G + L + E ILE L+ R + V++ + +A++ Sbjct: 98 EEKRTLNWQDAVVDLSKDSIQKGDQAIFLSKTEMIILEMLVNKRNQIVSRDTLITALWD- 156 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218 DEA V +N + ++++LRKKL +++G D +++K GY Sbjct: 157 -DEAFVSDNTLTVNVNRLRKKL-SEIGMDSAIETKVGKGY 194 >gi|325914197|ref|ZP_08176549.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325539581|gb|EGD11225.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 238 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 90/195 (46%), Gaps = 31/195 (15%) Query: 51 AFLIGKGEKVL------------ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98 A L G+G +++ E+ R IR S VP+I ++ + D+G +D Sbjct: 48 ALLAGQGAELVVLDIGLPDRDGHEVLREIRQWSNVPVIMLTVRAGETEKVAALDAGANDY 107 Query: 99 VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLP 150 V KP +E++AR+ A+ R+ + E+ VF DG R+ + GE PL Sbjct: 108 VTKPFGVQELMARIRALLRQAGAGSTVEES----VFDDGRLHIHLGLREVTLDGEAIPLS 163 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG---- 206 R+E +L L+ + G+ V + Q+ ++G E + + + + KLR+KL + Sbjct: 164 RKEYALLALLLKHAGRVVTQPQLLREVWGPTHEE-DTHYLRILVGKLRQKLHDDAAAPHY 222 Query: 207 --FDPVDSKRFLGYS 219 +P RF+G + Sbjct: 223 IVTEPGVGLRFIGVT 237 >gi|325273594|ref|ZP_08139816.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] gi|324101272|gb|EGB98896.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] Length = 224 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 19/165 (11%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118 IR S+V +I ++ L L D G DD + KP E+LAR+ ++ RR Sbjct: 66 IRKTSRVRIIMLTGRGRLHDKLKGLDGGADDYLVKPFEFPELLARIRSLQRRGDKVVDHP 125 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 L+V++ + G R F E+ + F L L LM++ G+ + ++QI S + Sbjct: 126 TLRVADLELDPGRHRAFRGDLRVELTTKEFAL-------LRLLMSHPGEALTRSQIISLV 178 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + FD + NV++ I +LR K+ + + + R +GY I+ Sbjct: 179 WDMNFD--CDTNVIDVAIRRLRAKIDDPFENKLIHTLRGVGYVIE 221 >gi|320012489|gb|ADW07339.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 275 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 20/202 (9%) Query: 9 ALVKDGYIALFGDD-GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 A V GY+ G D G + +G +LE ++ R D+ ++ L G G E+ R I Sbjct: 55 AEVAAGYLGRAGYDVGRADDGPAALES----VAALRPDLVVLDLMLPG-GMDGFEVCRRI 109 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 RA VP+I ++ + ++G DD V KP RE++ RV A+ RR + R E Sbjct: 110 RARGPVPVIMLTARGDEDDRILGLETGADDYVTKPFSPRELVLRVEAVLRRWR----RTE 165 Query: 128 TGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 GP I + R GE L RE +L + + N G+ + ++ ++G Sbjct: 166 PGPSAGIGGAGIVLEPLARRATRGGEDLCLTLREFDLLAFFLRNPGRAYTREELMREVWG 225 Query: 180 LFDEAVEENVVESHISKLRKKL 201 + + + V H+ +LR K+ Sbjct: 226 W--DFGDLSTVTVHVRRLRGKV 245 >gi|314937032|ref|ZP_07844379.1| DNA-binding response regulator [Staphylococcus hominis subsp. hominis C80] gi|313655651|gb|EFS19396.1| DNA-binding response regulator [Staphylococcus hominis subsp. hominis C80] Length = 224 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 84/160 (52%), Gaps = 9/160 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---V 121 R IR S VP++ +S + + + G DD + KP H ++A++ AIYRR+ V Sbjct: 64 RQIRQVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFHTNVLIAKLQAIYRRVYQFGV 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R + +D +G+ + L + E ILE L+ + + V + + +A++ Sbjct: 124 EERRTLNWQDALVDLSKDSIQKGDKIIYLSKTEMIILEMLIQKQNQIVTRDTLITALWD- 182 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 DEA V +N + ++++LRKKL +++G + +++K GY Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKL-SEIGMETEIETKVGKGY 220 >gi|313110946|ref|ZP_07796786.1| hypothetical protein PA39016_002870021 [Pseudomonas aeruginosa 39016] gi|310883288|gb|EFQ41882.1| hypothetical protein PA39016_002870021 [Pseudomonas aeruginosa 39016] gi|327482584|gb|AEA85894.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri DSM 4166] Length = 219 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 19/165 (11%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118 IR S+V +I ++ L L D G DD + KP E+LAR+ ++ RR Sbjct: 61 IRKTSRVRIIMLTGRGRLHDKLKGLDGGADDYLVKPFEFPELLARIRSLQRRGDKVVDHP 120 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 L+V++ + G R F E+ + F L L LM++ G+ + ++QI S + Sbjct: 121 TLRVADLELDPGRHRAFRGDLRVELTTKEFAL-------LRLLMSHPGEALTRSQIISLV 173 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + FD + NV++ I +LR K+ + + + R +GY I+ Sbjct: 174 WDMNFD--CDTNVIDVAIRRLRAKIDDPFENKLIHTLRGVGYVIE 216 >gi|301065608|ref|YP_003787631.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|300438015|gb|ADK17781.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] Length = 232 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 4/155 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA + VP+I ++ + + + +G DD V KP E+ AR+ A +RR RA Sbjct: 75 IRAITSVPIIFLTARVTDEDKVRGLGAGGDDYVTKPFSLAELGARIKAHFRRESQPQKRA 134 Query: 127 ETGPI-RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 ++ D R +V +V L +++ +++E L N G+ ++ Q++ I+G +D Sbjct: 135 RMAIFDQILIDYRAKQVSIDDQVLSLEKKQYQLVELLSLNPGQVFSREQLYEKIWG-YDA 193 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ V+ HI ++R P+++ +GY Sbjct: 194 LGDDRVITEHIRRIRLLFDRYQVTSPIETVWGVGY 228 >gi|300788203|ref|YP_003768494.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|261597219|gb|ACX85477.1| AmrE [Amycolatopsis mediterranei U32] gi|299797717|gb|ADJ48092.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 228 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 7/131 (5%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150 G DD + KP RE+ ARV + RR AET G RV R L Sbjct: 100 GADDYLTKPFSPRELAARVRTVLRRAAGVAPAAETFAVGGARVDVLSRRAWAGDAEIVLT 159 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 E +L +L+ + G+ +++ Q+ SA++G + A V+ H+++LR KL P+ Sbjct: 160 STEFDLLTHLLRHPGQVLSRDQLLSAVWG-YAAAAGTRTVDVHVAQLRAKLGAS---SPI 215 Query: 211 DSKRFLGYSID 221 + R +GY+ D Sbjct: 216 RTVRGIGYAAD 226 >gi|262193593|ref|YP_003264802.1| transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262076940|gb|ACY12909.1| two component transcriptional regulator, winged helix family [Haliangium ochraceum DSM 14365] Length = 227 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 12/166 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L R +R VP+I +S + + G DD V KP RE+ RV A+ RR+ Sbjct: 63 LNLCRKLRERGDVPIIFLSSRSEEADRILGLELGGDDYVTKPFSPRELATRVKAVLRRVA 122 Query: 121 VSNNRAETGPIRVFSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + P V+ DP V + L E R+L ++ G+ + ++Q+ Sbjct: 123 ARRGADDAPPALVYERLTLDPAAHELRVDDDKIALTVTEFRVLHAILERPGRVLTRSQLI 182 Query: 175 SAIY--GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 Y GL V E +++HI ++R KLR G + +++ LGY Sbjct: 183 DRAYEDGLH---VSERTIDTHIRRIRAKLR-PYGIEAIETVHGLGY 224 >gi|254429139|ref|ZP_05042846.1| response regulator receiver domain protein [Alcanivorax sp. DG881] gi|196195308|gb|EDX90267.1| response regulator receiver domain protein [Alcanivorax sp. DG881] Length = 225 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 20/166 (12%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL------- 119 +R HS++P++ ++ + + G DD V KP RE++AR+ AI +RL Sbjct: 67 LRQHSELPVLFLTARQDEVDRILGLELGGDDYVTKPFSPREVVARIRAILKRLGPKSDAD 126 Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K + + + +RVF R E+ L R E RIL ++ G+ ++ Q+ Sbjct: 127 IDTNKTTLWQVDDSGLRVFF--RHTELS-----LTRSEYRILTTMVQRPGQVFSRAQLLD 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE E V++HI LR KLR G + ++R +GY +D Sbjct: 180 ICDS--DEDSFERSVDTHIKTLRAKLRPLNGDHLIVTRRGIGYLLD 223 >gi|169828429|ref|YP_001698587.1| regulatory protein [Lysinibacillus sphaericus C3-41] gi|168992917|gb|ACA40457.1| Regulatory protein [Lysinibacillus sphaericus C3-41] Length = 228 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 8/142 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----LKV 121 IR +P+I +S + SG DD ++KP + E++ARV + RR + + Sbjct: 68 IREEKSMPIIMLSAKSEDIDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRSSKYNVNM 127 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 NN+ E G + + +D R VQ + L +E ILE L N+G ++ +I+ A++ Sbjct: 128 KNNKKIIEIGNLVINTDTRQVIVQEKEIRLTPKEFDILELLAYNKGIVLSIQKIYEAVWK 187 Query: 180 LFDEAVEENVVESHISKLRKKL 201 D +N V HI+ +R+K+ Sbjct: 188 -EDYFKSDNTVMVHITNIREKI 208 >gi|167628753|ref|YP_001679252.1| transcriptional regulator [Heliobacterium modesticaldum Ice1] gi|167591493|gb|ABZ83241.1| transcriptional regulator [Heliobacterium modesticaldum Ice1] Length = 232 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 13/164 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ +R + VP+I I+ + G DD V KP + E++ARV A RR + Sbjct: 63 IEICHELRKKTDVPIIFITSRDAPHEVALGLGIGGDDYVKKPFNPVEVVARVRAQLRRFR 122 Query: 121 VSNNRAETGP-IRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 E P + F D R E++GE L +E +L +L N + + Q+ Sbjct: 123 KQCALQEDEPAVLAFGDLRINLFDRTVEMKGERVELTVKEYDLLLFLAQNPNRYFSSDQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217 A++ ++ + + +HIS LR+ KLG DP DS R++ Sbjct: 183 IEAVWN-HPRSISQKALMTHISNLRR----KLGEDP-DSPRYIA 220 >gi|146311032|ref|YP_001176106.1| two component transcriptional regulator [Enterobacter sp. 638] gi|145317908|gb|ABP60055.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 238 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 7/147 (4%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IR ++ +P+I IS S + ++G DD + KP +E++AR+ A++RR Sbjct: 64 LEICRRIRQLTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQ 123 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G I DP ++ G+ L RE +L + + G+ ++ + Sbjct: 124 QAMGLAQTNGQIYAHGLALDPLLRSVQLNGKEVVLTPREFELLYFFARHPGEVFSRLALL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++G E E+ V +HI++LR K+ Sbjct: 184 EQVWGYQHEGY-EHTVNTHINRLRIKI 209 >gi|28869098|ref|NP_791717.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852338|gb|AAO55412.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] Length = 220 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 24/218 (11%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL +GY + +DG+S ++L E + + ++ F +L R +R Sbjct: 19 ALNTEGYTLDWLEDGLS--ALHALRSEPFDLLLLDLGLPRMDGF---------DLLRQLR 67 Query: 69 AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 A +P++ ++ + D+G DD + KP E+ ARV A+ RR S RA Sbjct: 68 AEELALPVLILTARDGTANRIAGLDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQ 124 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E I + + QG + E ++L LM GK V + ++ + +YG + + Sbjct: 125 PLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG-WQD 183 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE N +E I LRKKL +L + + R +GY ++ Sbjct: 184 KVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217 >gi|42781625|ref|NP_978872.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737548|gb|AAS41480.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 231 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 13/207 (6%) Query: 27 EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+N + + +E LQ + +V + ++ LE+ + +R ++ VP++ +S Sbjct: 25 EGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135 + +G DD + KP + E++ARV A+ RR N ++ E G IR+ S Sbjct: 85 DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSSKNEDGMIRIRSAEIHK 144 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 +V GE L E IL L +N G+ + +IF ++ D V HIS Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203 Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221 LR KL + G + + +GY I+ Sbjct: 204 NLRDKLETGMNGEKFIHTVWGVGYKIE 230 >gi|88703476|ref|ZP_01101192.1| Phosphate regulon transcriptional regulatory protein phoB [Congregibacter litoralis KT71] gi|88702190|gb|EAQ99293.1| Phosphate regulon transcriptional regulatory protein phoB [Congregibacter litoralis KT71] Length = 236 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 6/164 (3%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100 R D+ ++ L G G + L R+ R ++P+I ++ + + + G DD + Sbjct: 47 RPDIVLLDWMLPG-GSGIELLRRLKRDDTTQEIPVIMLTAKTAEDNVIQGLEVGADDYIT 105 Query: 101 KPIHHREILARVAAIYRRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 KP RE++AR+ A+ RR V S +R + + + R + E + E +L+ Sbjct: 106 KPFAPRELIARIKALLRRSGVGESADRMQVSELVLDGKSRRVYLADEPLDMGPTEFNLLQ 165 Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + M++ + ++ Q+ ++G + VEE V+ HI +LRK L+ Sbjct: 166 FFMSHPERAYSRNQMLDQVWGA-NVYVEERTVDVHIRRLRKALQ 208 >gi|126176488|ref|YP_001052637.1| two component transcriptional regulator [Shewanella baltica OS155] gi|125999693|gb|ABN63768.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS155] Length = 229 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/162 (22%), Positives = 82/162 (50%), Gaps = 14/162 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123 +R H +VP++ ++ + + ++G +D ++KP RE++AR+ + R L + Sbjct: 68 LRQHDKVPVLILTARDQEEEKIRLLEAGANDYLSKPFGIRELIARIKVLVRDLVDEPALS 127 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + G +++ + + L ++E ++E LM++ G+ V +T++ I+G Sbjct: 128 DVLQFGALKLQKSTHQLWLDQQEIALTKKEFALMETLMSHPGQLVKQTELLRDIWG---- 183 Query: 184 AVEENVVESH-----ISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E + +SH +S+LRKKL + + ++ LGY + Sbjct: 184 --ETHTDDSHYLRILVSQLRKKLNDSTEQQLIKTEAGLGYRL 223 >gi|332286633|ref|YP_004418544.1| phosphate regulon two-component response regulator [Pusillimonas sp. T7-7] gi|330430586|gb|AEC21920.1| phosphate regulon two-component response regulator [Pusillimonas sp. T7-7] Length = 233 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 83/168 (49%), Gaps = 8/168 (4%) Query: 57 GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G + L R +R+ VP+I ++ + ++ ++G DD + KP +E++AR+ Sbjct: 58 GASGITLARTLRSDERTRHVPVIMLTAKGAEHDKVEGLEAGADDYITKPFSPKELIARIK 117 Query: 114 AIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A+ RR +++++ + G +++ G+ + E R+L + M + + ++ Sbjct: 118 AVLRRRAPQLTDDIIQIGGLKLDPATHRVTGGGQTLTVGPTEFRLLHFFMTHTERVFSRA 177 Query: 172 QIFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 Q+ ++G D VEE V+ HI +LRK L + +++ R GY Sbjct: 178 QLLDQVWG--DHVFVEERTVDVHIRRLRKALEPGKLENHIETVRGAGY 223 >gi|290770180|gb|ADD61939.1| putative protein [uncultured organism] Length = 230 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 17/146 (11%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + +P++ + + + +G DD + KP E++AR+A++ RR N +A Sbjct: 67 IRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMEELIARIASLIRRYTRFNQQA 126 Query: 127 ETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G I+ + + R F LP +E +L Y ++GK + K QI+ ++ Sbjct: 127 --GAIQKLNFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVW 184 Query: 179 G---LFDEAVEENVVESHISKLRKKL 201 G +D++ N++ + IS+LRKKL Sbjct: 185 GEEYFYDDS---NIM-AIISRLRKKL 206 >gi|295096445|emb|CBK85535.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 241 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 7/147 (4%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IR ++ +P+I IS S + ++G DD + KP +E++AR+ A++RR Sbjct: 67 LEICRRIRQMTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQ 126 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G I+ DP + G+ L RE +L + + G+ ++ + Sbjct: 127 QAMGQAQTDGIIQAHGLTIDPLARTVRLNGQHVDLTPREFELLYFFARHPGEVFSRLALL 186 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++G E E+ V +HI++LR K+ Sbjct: 187 EQVWGYQHEGY-EHTVNTHINRLRIKI 212 >gi|299821102|ref|ZP_07052990.1| response regulator [Listeria grayi DSM 20601] gi|299816767|gb|EFI84003.1| response regulator [Listeria grayi DSM 20601] Length = 237 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/213 (23%), Positives = 100/213 (46%), Gaps = 16/213 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLIGKGEK 59 +++DD + D I F + + + + + +E LQ + D+ ++ L G+ Sbjct: 6 ILVVDDEKPIAD--IVKFNLNKEGFDVYCAYDGDEALQLVEEVQPDLILLDIMLPGRDG- 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R +R +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 63 -VEVCREVRKKYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRH 121 Query: 120 -KVS--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 +VS N+ E G + + D +G+ L RE +L YL + G+ + + Sbjct: 122 SQVSSQAAEDQENSELEVGSLTIHPDAYVVSKRGDTIELTHREFELLHYLAKHIGQVMTR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ + +LR+K+ + Sbjct: 182 EHLLQTVWG-YDYFGDVRTVDVTVRRLREKIED 213 >gi|228919209|ref|ZP_04082580.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840451|gb|EEM85721.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 238 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 15/162 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 63 IEVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFF 122 Query: 121 V--SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V SN + F + E L +E +L++ ++N G+ KTQ Sbjct: 123 VLGSNISVQEQTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFISNPGQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSK 213 +F ++ D +E +N V HI KLRKK+ DP + K Sbjct: 183 LFRNVWD--DNYIEDDNTVMVHIRKLRKKIE----IDPSNPK 218 >gi|254427219|ref|ZP_05040926.1| response regulator receiver domain protein [Alcanivorax sp. DG881] gi|196193388|gb|EDX88347.1| response regulator receiver domain protein [Alcanivorax sp. DG881] Length = 229 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 5/115 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146 G DD + KP E+LAR++A+ RR VS ET GP V R + + Sbjct: 91 LSQGADDYMVKPTKQAELLARISALGRRAGVSEMDEETALSVGPWTVDRSRRQILLDEDA 150 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L ++ + YL N GK +++ + ++G+ +E V+ HIS++R+ L Sbjct: 151 IKLTDKDYELACYLFQNVGKLMSRAHLLEKVWGIM-TPIESRTVDVHISRIRRSL 204 >gi|167035228|ref|YP_001670459.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166861716|gb|ABZ00124.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 232 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 84/164 (51%), Gaps = 8/164 (4%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE L + R +R+ P++ ++ + D G DD V KP+ R +LAR+ Sbjct: 57 LMLPGEDGLSICRRVRSQYLGPILMLTARSDELDQVQGLDLGADDYVCKPVRPRLLLARI 116 Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 A+ RR + +++ + G + + + R+ + ++ L E +L L +N G+ + Sbjct: 117 QALLRRSETVDSKRQDLAFGALHIDNRLREARLGEQLIELTGAEFDLLWLLASNAGRVLT 176 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 + QIF+A+ G+ + ++ ++ ISK+R K+G DP+ + Sbjct: 177 REQIFTALRGVGYDG-QDRSIDIRISKIRP----KIGDDPLQPR 215 >gi|138893961|ref|YP_001124414.1| transcriptional regulatory protein [Geobacillus thermodenitrificans NG80-2] gi|134265474|gb|ABO65669.1| Transcriptional regulatory protein [Geobacillus thermodenitrificans NG80-2] Length = 220 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 9/142 (6%) Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV 142 ++Q + ++G DD + KP E++AR+ A+ RR V + ET F+ R Sbjct: 84 AVQDRVTGLEAGADDYLVKPFEIDELVARLKALARRTFVP-LQEETVTFHGFTLNRTSHT 142 Query: 143 ---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 E L RE ++L+ L+ N+G+ V + I ++G +D V +++ I LRK Sbjct: 143 LHRNNEEISLTPREFQLLDLLVQNQGQVVPRETILDRVWG-WDADVSMKTIDATIKLLRK 201 Query: 200 KLRNKLGFDPVDSKRFLGYSID 221 KL++ D + + R +GY ID Sbjct: 202 KLKD----DVIQTVRGVGYKID 219 >gi|57652364|ref|YP_187434.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus COL] gi|87160753|ref|YP_495193.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196579|ref|YP_501407.1| nisin susceptibility-associated DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222736|ref|YP_001333558.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|161510830|ref|YP_001576489.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|258451567|ref|ZP_05699595.1| DNA-binding response regulator [Staphylococcus aureus A5948] gi|262049219|ref|ZP_06022095.1| hypothetical protein SAD30_0866 [Staphylococcus aureus D30] gi|262051500|ref|ZP_06023722.1| hypothetical protein SA930_0430 [Staphylococcus aureus 930918-3] gi|282923007|ref|ZP_06330694.1| two-component system, OmpR family, response regulator [Staphylococcus aureus A9765] gi|284025643|ref|ZP_06380041.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 132] gi|294849735|ref|ZP_06790476.1| two-component system [Staphylococcus aureus A9754] gi|57286550|gb|AAW38644.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus COL] gi|87126727|gb|ABD21241.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87204137|gb|ABD31947.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150375536|dbj|BAF68796.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|160369639|gb|ABX30610.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257860861|gb|EEV83681.1| DNA-binding response regulator [Staphylococcus aureus A5948] gi|259160670|gb|EEW45692.1| hypothetical protein SA930_0430 [Staphylococcus aureus 930918-3] gi|259162733|gb|EEW47299.1| hypothetical protein SAD30_0866 [Staphylococcus aureus D30] gi|282593388|gb|EFB98384.1| two-component system, OmpR family, response regulator [Staphylococcus aureus A9765] gi|294823538|gb|EFG39966.1| two-component system [Staphylococcus aureus A9754] gi|315197087|gb|EFU27428.1| response regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320139032|gb|EFW30918.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144434|gb|EFW36198.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329729201|gb|EGG65611.1| putative response regulator protein GraR [Staphylococcus aureus subsp. aureus 21189] gi|329730115|gb|EGG66505.1| putative response regulator protein GraR [Staphylococcus aureus subsp. aureus 21193] Length = 221 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 6/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S VP+I IS + G DD + KP + +A++ A+ RR L V+N Sbjct: 66 IRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLSVAN 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + D Q + L E +IL+ L N K V++T + + + Sbjct: 126 DSLTVKGCTLILDEAKVVYQEQNIQLSLTELQILKLLFQNEDKYVSRTALIEKCWE-SEN 184 Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 +++N + ++++LRKKL N +G D + +K+ +GY + Sbjct: 185 FIDDNTLAVNMTRLRKKL-NTIGVNDFIITKKNVGYKV 221 >gi|163943423|ref|YP_001642653.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865620|gb|ABY46678.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 235 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 82/168 (48%), Gaps = 13/168 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R++ ++P + ++ + D G +D + KP +LAR+ + RR Sbjct: 70 LEVARLVNQKKKIPYLLLTSRSEPLDIMQGLDMGAEDYITKPYDLTVLLARIRTVLRR-S 128 Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 SN+ + G I + V+G+ L ++ +L Y + ++G+ ++K +++ Sbjct: 129 CSNDISNGGITRCGNIEINLLTHKVIVEGKHVHLTKQLFELLHYFIIHKGQIISKEELYK 188 Query: 176 AIYGLFD--EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G +D E E N +E +I ++LRN L D + + R GY ++ Sbjct: 189 NIWG-YDPSELQETNTLEVNI----RRLRNSLDVDIIKTVRGKGYVLE 231 >gi|295394967|ref|ZP_06805180.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972300|gb|EFG48162.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 243 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 45 DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D ++ + G G +VL R R + VP++ ++ + G DD +NKP Sbjct: 53 DACVLDVLMPGADGREVLRTLR--REENWVPVVLLTQVGEAVERAMALEEGADDYINKPF 110 Query: 104 HHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI------- 156 E++ARV A+ RR + T I + G + G L RE I Sbjct: 111 DPHELVARVRAVLRRTRAGEPPLATASILTSTFGLKIDRVGRRAWLRDRELVITPKGFTL 170 Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 LEYLM ++ + + ++++ ++G FD+AV V+S +++LR+ L Sbjct: 171 LEYLMVHKDELIERSRLLEVLWG-FDDAVGTRAVDSRVAELRRVL 214 >gi|260598567|ref|YP_003211138.1| DNA-binding transcriptional regulator BaeR [Cronobacter turicensis z3032] gi|260217744|emb|CBA32154.1| Transcriptional regulatory protein baeR [Cronobacter turicensis z3032] Length = 240 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 6/153 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S+VP++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSEVPIVMVTARIEEIDRLLGLEIGADDYICKPFSPREVVARV 121 Query: 113 AAIYRRLKVSNNRAE---TGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K + P+ V +GR + + L E R+L+ L + GK Sbjct: 122 KTILRRCKPQRDLQTLDAQSPL-VIDEGRFQASWRQKPLDLTPAEFRLLKTLSSEPGKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ Q+ + +Y + V + ++SHI LR+KL Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212 >gi|260597499|ref|YP_003210070.1| DNA-binding transcriptional regulator PhoP [Cronobacter turicensis z3032] gi|260216676|emb|CBA30024.1| Virulence transcriptional regulatory protein phoP [Cronobacter turicensis z3032] Length = 223 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ + G ++ + ++ + DV+ ++ L E L Sbjct: 4 LVVEDNALLRHHLKVQLSELGHQVDAAEDAKEADYYLNEHLPDVAIVDLGL--PDEDGLS 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R RA +P++ ++ Q ++ +G DD V KP H E++AR+ A+ RR Sbjct: 62 LIRRWRASEITLPILVLTAREGWQDKVEVLGAGADDYVTKPFHIEEVVARMQALLRRNSG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P V R+ + + L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVISMPPFVVDLSRREVTIHDNLIRLTAFEYTIMETLIRNAGKVVSKDSLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E + ++ + +LRKK++ + + + + R GY D Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAEYPGEAITTVRGQGYRFD 221 >gi|258452867|ref|ZP_05700861.1| response regulator protein graR [Staphylococcus aureus A5948] gi|257859378|gb|EEV82232.1| response regulator protein graR [Staphylococcus aureus A5948] Length = 224 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 7/159 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121 R +R S VP++ +S + + + G DD + KP + ++A++ AIYRR+ Sbjct: 64 RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R T V +D +G + L + E ILE L+ + + V++ I +A++ Sbjct: 124 EEKRTLTWQDAVVDLSKDSIQKGDQTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 182 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DEA V +N + ++++LRKKL +++K GY Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGY 220 >gi|332088374|gb|EGI93492.1| transcriptional regulatory protein baeR [Shigella boydii 5216-82] Length = 240 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 8/156 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167 I RR K + AE+ P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ + + +Y + V + ++SHI LR+KL + Sbjct: 180 FSREHLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|322411718|gb|EFY02626.1| response regulator protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 230 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/213 (23%), Positives = 103/213 (48%), Gaps = 17/213 (7%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIR 68 L ++GY +G E N LE + D+ ++ + + G +++L R Sbjct: 21 LSQEGYHVHVASNGQ--EALNYLE-------NTHIDLMVVDIMMPVMDGYSLVKLLR--E 69 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126 + Q+P++ ++ ++ + F GVDD + KPI E++ R+ A+ RR+K+ + + Sbjct: 70 SGQQLPILMMTAKSQFESLEEAFQLGVDDYLVKPIILSELVLRIKALLRRVKLEHEQELQ 129 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 ++ S G + LP +E +L L++ K + + I+G+ +E Sbjct: 130 LANCKLQYQSLTLTDLKTGRIEQLPPKEFYVLYKLLSTPQKIFTRLDLLDDIWGM-EEDY 188 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E VV++ I ++R+K ++ FD + + R LGY Sbjct: 189 DERVVDACIKRIRQKCKDYQDFDII-TIRGLGY 220 >gi|307298631|ref|ZP_07578434.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306915796|gb|EFN46180.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 215 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 2/131 (1%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 + +P+I ++ ++ + SG DD + KP E+LAR+ A+ RR K R Sbjct: 69 TDLPVIMLTAKGEVKDRIRGLKSGADDYLPKPFVIEELLARIEAVLRR-KGKVERISYFE 127 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I + R+ + GE L + E +L L++N G ++K ++ ++G D NVV Sbjct: 128 ITLDMQSREAFLNGEPLQLSKTEFDLLAVLLSNAGIVMSKERLLEKVWGSEDWG-NPNVV 186 Query: 191 ESHISKLRKKL 201 E +I+ LRKKL Sbjct: 187 EVYINYLRKKL 197 >gi|300858078|ref|YP_003783061.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685532|gb|ADK28454.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302205800|gb|ADL10142.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis C231] gi|302330359|gb|ADL20553.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis 1002] gi|308276035|gb|ADO25934.1| two component system response regulator [Corynebacterium pseudotuberculosis I19] Length = 230 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 81/170 (47%), Gaps = 14/170 (8%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R A P++ ++ + + D+G DD + KP E+LARV ++ RR Sbjct: 60 LEVCRTLRSAGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRA 119 Query: 120 KVSNNRAETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 A GP +++ D RD G L R E +L+ LMAN + +++ Sbjct: 120 AAD---AVGGPSQGELTFDDLKLNPDTRDVTRGGRHISLTRTEFALLQLLMANARRVLSR 176 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + I ++G +D N +E +I LR+K ++ + + R +GY + Sbjct: 177 STILEEVWG-YDFPTSGNALEVYIGYLRRKTESEGEPRLIHTVRGVGYVL 225 >gi|291566616|dbj|BAI88888.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 774 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 86/169 (50%), Gaps = 16/169 (9%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + L R +R+H+ Q+P++ ++ S + + D+G DD + KPI E++AR+ A+ RR Sbjct: 60 IALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRA 119 Query: 120 KVSNNRAETGPIRVFSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +S P+ + D +P Q V PL +E ++E + + + + I Sbjct: 120 TIS-----LPPVIHWRDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 ++ + +E +N V +HI LR KL++ G DP +++ +GY I Sbjct: 175 IEHLWSI-EEPAADNTVRAHIKSLRNKLKDA-GGDPKLIENVYGIGYRI 221 Score = 34.7 bits (78), Expect = 9.8, Method: Compositional matrix adjust. Identities = 18/70 (25%), Positives = 42/70 (60%), Gaps = 3/70 (4%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 ++L ++IR + +P++ ++++ +T + F +G DD ++KP+ E++AR+ + Sbjct: 545 IDLCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLH 604 Query: 118 RLKVSNNRAE 127 R ++ N AE Sbjct: 605 RSRLWRNIAE 614 >gi|290352143|dbj|BAI78782.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+L R+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLDRIRAIFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|297563468|ref|YP_003682442.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847916|gb|ADH69936.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 221 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 103/219 (47%), Gaps = 26/219 (11%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66 R L GY L DG+ +G + S+ D+ ++ L G GE+VL R Sbjct: 18 RGLETAGYQVLTAADGI--DGLT-------MALSSDVDLVVLDLGLPGIPGEEVL---RR 65 Query: 67 IRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +RA VP+I ++ ++ + D+G DD + KP E+LARV A R R Sbjct: 66 LRARRPSVPVIVLTAKDAVSDRVANLDAGADDYMVKPFSVSELLARVRARLR--GGGQER 123 Query: 126 AE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181 + G + + R V+G L RE +LE L+ + + ++ Q+ ++G F Sbjct: 124 GDVLAAGGVVLDLGARTASVEGRTVNLSAREFALLEVLIRHPTQVFSRPQLLDRVWGYDF 183 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D A NVVE ++S+LR+ KLG + + + R GY + Sbjct: 184 DGA--SNVVEVYVSQLRR----KLGSERIQTVRGAGYRL 216 >gi|196041427|ref|ZP_03108720.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027675|gb|EDX66289.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 232 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172 KV+ N++ E G + + + R V GE L +E IL YL+A+ K+V + Sbjct: 124 LNQPKVAENKSALEVGGVTIDPERRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 IF ++ D+ E N V HI LRKKL Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210 >gi|294501737|ref|YP_003565437.1| two-component response regulator [Bacillus megaterium QM B1551] gi|295707087|ref|YP_003600162.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294351674|gb|ADE72003.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294804746|gb|ADF41812.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 241 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 16/170 (9%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDF---FDSGVDDVVNKPIHHREILARVAAI--YR 117 L R+ +A P+I ++ + TTLD D G +D V KP E+LARV + YR Sbjct: 65 LRRLRKAEVFTPVILLT---ARNTTLDKVMGLDQGANDYVTKPFEIEELLARVRSCIRYR 121 Query: 118 RL-KVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 L + S + + SD R+ E L +E ++ YL+ N+ K V + Sbjct: 122 SLVEASGTKEAEAELLTISDLTINLETREVLRNNESITLTPKEYDLVVYLLTNKNKIVTR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I + ++G ++ E NV++ +I LRKK+ + + R +GY + Sbjct: 182 EGILTNVWG-YEYEGETNVIDVYIRHLRKKVDEGFSTSLIHTVRGVGYMM 230 >gi|228917869|ref|ZP_04081406.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841805|gb|EEM86915.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 202 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R + +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 39 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 98 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 99 KTEVTVSHEVIEAGEITICPKERKVHVSGKEIQLTYREFNLCQLFVSNPQRVFMRDELLE 158 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 159 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 201 >gi|289428055|ref|ZP_06429759.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295131570|ref|YP_003582233.1| transcriptional regulatory protein, C-terminal domain protein [Propionibacterium acnes SK137] gi|289158938|gb|EFD07138.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291377382|gb|ADE01237.1| transcriptional regulatory protein, C-terminal domain protein [Propionibacterium acnes SK137] gi|313763694|gb|EFS35058.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313771712|gb|EFS37678.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313793758|gb|EFS41789.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313803070|gb|EFS44278.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313808476|gb|EFS46943.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313810535|gb|EFS48249.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313813831|gb|EFS51545.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313816988|gb|EFS54702.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313818098|gb|EFS55812.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313820957|gb|EFS58671.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313823972|gb|EFS61686.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313827091|gb|EFS64805.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313831577|gb|EFS69291.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313839302|gb|EFS77016.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314916553|gb|EFS80384.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918787|gb|EFS82618.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314920994|gb|EFS84825.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314926984|gb|EFS90815.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314932398|gb|EFS96229.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314956707|gb|EFT00959.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314959618|gb|EFT03720.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961803|gb|EFT05904.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964787|gb|EFT08887.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314968705|gb|EFT12803.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314974927|gb|EFT19022.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977978|gb|EFT22072.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314979631|gb|EFT23725.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314984610|gb|EFT28702.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314988269|gb|EFT32360.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314990356|gb|EFT34447.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315079245|gb|EFT51248.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315082292|gb|EFT54268.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315083737|gb|EFT55713.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315087378|gb|EFT59354.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315089795|gb|EFT61771.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315095569|gb|EFT67545.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315100169|gb|EFT72145.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315102492|gb|EFT74468.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|327326542|gb|EGE68330.1| DNA-binding response regulator TrcR [Propionibacterium acnes HL096PA3] gi|327332809|gb|EGE74541.1| DNA-binding response regulator TrcR [Propionibacterium acnes HL096PA2] gi|327447632|gb|EGE94286.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327448505|gb|EGE95159.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327449638|gb|EGE96292.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327455816|gb|EGF02471.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456090|gb|EGF02745.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|327457963|gb|EGF04618.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|328757131|gb|EGF70747.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328757326|gb|EGF70942.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328757510|gb|EGF71126.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328762085|gb|EGF75590.1| DNA-binding response regulator TrcR [Propionibacterium acnes HL099PA1] gi|332676438|gb|AEE73254.1| putative two-component system response regulator [Propionibacterium acnes 266] Length = 243 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 8/133 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146 +G DD V KP E++AR+ A+ RR + + ++ G + + D R+ GE Sbjct: 108 LTAGGDDYVTKPFSLEEVIARLRALLRRSGATEPKPDSMLTVGDLTLDEDSREVRRAGEE 167 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L E +L Y M N + ++K QI ++ +D + NVVE +IS LRKK+ G Sbjct: 168 IHLTTTEFELLRYFMRNPKRVLSKAQILDRVWN-YDFRGQANVVELYISYLRKKIDR--G 224 Query: 207 FDP-VDSKRFLGY 218 P + + R GY Sbjct: 225 HKPMIHTMRGAGY 237 >gi|206974598|ref|ZP_03235514.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206747241|gb|EDZ58632.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 225 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 69 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADM 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|167588550|ref|ZP_02380938.1| DNA-binding response regulator CreB [Burkholderia ubonensis Bu] Length = 233 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 27/236 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGV----SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57 ++++D + D + G DG+ G +LE AR D+ ++ L Sbjct: 6 ILVVEDELAIADTIVYALGTDGMQTVHCTLGHAALER----LREARFDLVVLDVGL--PD 59 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E+ R +R + VP+I ++ + + G DD V KP RE+ ARV I R Sbjct: 60 INGFEVCRTLRTFTDVPVIFLTARHDEIDRIVGLEIGADDYVVKPFSPRELAARVRVILR 119 Query: 118 RLK--VSNNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 RL + RA+ GP + +DG G+ L R E +L L+ + G+ Sbjct: 120 RLNRPAAQPRAQ-GPGTPDVAQGFELDADGARLAWLGQTLNLTRYEFGLLALLVRHPGRI 178 Query: 168 VAKTQIFSAIYGLFDEAVE--ENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ Q+ ++ +A++ + V++HI LR KLR DP+ + R +GYS+ Sbjct: 179 YSRDQLMDLVW---RDAIDTTDRTVDTHIKTLRAKLRAIDPARDPIRTHRGMGYSL 231 >gi|27366756|ref|NP_762283.1| transcriptional regulator [Vibrio vulnificus CMCP6] gi|320158641|ref|YP_004191019.1| copper-sensing two-component system response regulator CusR [Vibrio vulnificus MO6-24/O] gi|27358323|gb|AAO07273.1| Transcriptional regulator [Vibrio vulnificus CMCP6] gi|319933953|gb|ADV88816.1| copper-sensing two-component system response regulator CusR [Vibrio vulnificus MO6-24/O] Length = 220 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 86/168 (51%), Gaps = 10/168 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ + LP + + VP+I ++ +++ + DSG +D + KP E+ AR+ A Sbjct: 57 GDSISHLPGWKKTKN-VPVILLTALVTVKDKVAGLDSGANDYLTKPFAEAELFARIRAQL 115 Query: 117 RRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R + S+++ ET + + R+ +GE L R E +L +L +N G+ + + Sbjct: 116 RSPESSEQGSSDKVETENLVIDKSTREVFFKGEQITLTRTEFDLLLFLASNLGRVFTRDE 175 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G ++ V++H+ +LR+KL G + +++ R +GY + Sbjct: 176 LLDHVWG-YNHFPTTRTVDTHVLQLRQKLA---GLE-IETLRGVGYKM 218 >gi|24115626|ref|NP_710136.1| DNA-binding response regulator CreB [Shigella flexneri 2a str. 301] gi|30065634|ref|NP_839805.1| DNA-binding response regulator CreB [Shigella flexneri 2a str. 2457T] gi|110808186|ref|YP_691706.1| DNA-binding response regulator CreB [Shigella flexneri 5 str. 8401] gi|24054966|gb|AAN45843.1| catabolic regulation response regulator [Shigella flexneri 2a str. 301] gi|30043898|gb|AAP19617.1| catabolic regulation response regulator [Shigella flexneri 2a str. 2457T] gi|110617734|gb|ABF06401.1| catabolic regulation response regulator [Shigella flexneri 5 str. 8401] gi|313646243|gb|EFS10705.1| transcriptional regulatory protein creB [Shigella flexneri 2a str. 2457T] gi|332748911|gb|EGJ79335.1| transcriptional regulatory protein creB [Shigella flexneri 4343-70] gi|332749686|gb|EGJ80102.1| transcriptional regulatory protein creB [Shigella flexneri 2747-71] gi|332768786|gb|EGJ98965.1| response regulator [Shigella flexneri 2930-71] gi|333009377|gb|EGK28833.1| transcriptional regulatory protein creB [Shigella flexneri K-218] Length = 229 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ V + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 + + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ ++ Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V+ HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-VDIHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|294634503|ref|ZP_06713038.1| QseB [Edwardsiella tarda ATCC 23685] gi|291092017|gb|EFE24578.1| QseB [Edwardsiella tarda ATCC 23685] Length = 220 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 6/132 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD + KP E+LAR A+ RR++ + +N + IR+ + + Sbjct: 91 LDAGADDYLVKPFALAELLARTRALIRRMQGLCDNILQVDNIRLDLSNHQVSCNNQALEV 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +E IL LM G+ +++ + +Y DE + N +E HI LR+ KLG + Sbjct: 151 TPKEFTILARLMTRAGQTISREVLQQDLYSWQDE-LSSNSLEVHIHNLRR----KLGRER 205 Query: 210 VDSKRFLGYSID 221 + + R +GY ++ Sbjct: 206 IKTLRGVGYRLE 217 >gi|302537327|ref|ZP_07289669.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302446222|gb|EFL18038.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 234 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 16/165 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + P+I ++ +++ + + G DD V KP E+LAR+ A+ RR ++ A Sbjct: 69 IRKRTSTPVIMVTARGDVRSRIHGLNMGADDYVVKPYDTGELLARIHAVARRTGATDEGA 128 Query: 127 ET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 T GP+ V R V G PL R+E +L L G + QI S Sbjct: 129 ATPETAPGTVRLGPVAVELPTRRVTVNGTDVPLTRKEFDLLALLAQRPGVVFRREQIISE 188 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 ++ E +E H++ LR+KLG +++ R +GY + Sbjct: 189 VWRTSWEGTGRT-LEVHVA----SLRSKLGMPALIETVRGVGYRL 228 >gi|229124769|ref|ZP_04253949.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228658746|gb|EEL14406.1| DNA-binding response regulator [Bacillus cereus 95/8201] Length = 206 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R + +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 43 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 102 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 103 KTEVTVSHEVIEAGEITICPKERKVHVSGKEIQLTYREFNLCQLFVSNPQRVFMRDELLE 162 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 163 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 205 >gi|182625928|ref|ZP_02953693.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|177908841|gb|EDT71339.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 226 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 79/165 (47%), Gaps = 7/165 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S+VP+I ++ ++ + D+G DD + KP E+LAR+ ++ + Sbjct: 61 LEVLRRIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKK-R 119 Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFS 175 V + + IR R + G+ L RE +L+ LM N+ + + + Sbjct: 120 VFTVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G ++ E NV++ ++ LR K+ + + + R +GY I Sbjct: 180 KVCG-YNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVI 223 >gi|56413910|ref|YP_150985.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362833|ref|YP_002142470.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128167|gb|AAV77673.1| response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094310|emb|CAR59820.1| response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 226 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 14/214 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + L + GY+ + DG + L + +E S I ++ G ++ R + Sbjct: 18 QGLTEAGYMVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 66 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ R Sbjct: 67 RTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 126 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 + + + + G+ L R+E +L L + G+ V +T I S ++G+ FD E Sbjct: 127 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 184 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N V+ I +LR K+ + + + R +GY + Sbjct: 185 TNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218 >gi|150389691|ref|YP_001319740.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949553|gb|ABR48081.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 224 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 3/149 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 P++ I+ ++ F G DD + KP +E+L R+ A+ RR ++ N T Sbjct: 73 NTPILMITAQQEIKDKHRGFLVGTDDYMTKPFDEQEMLFRIKALLRRAQIVNEHKLTIGD 132 Query: 132 RVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 GE LP++E +L LM+ K + Q+ I+G D + + + Sbjct: 133 TTLDYNTLTVTHGEDTITLPQKEFYVLFKLMSYPDKIFTRMQLMDEIWGP-DTETDGHTL 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 H+ +LR+KL+N F+ V + R LGY Sbjct: 192 NVHMGRLREKLKNNPDFEIV-TVRGLGYK 219 >gi|326693642|ref|ZP_08230647.1| response regulator [Leuconostoc argentinum KCTC 3773] Length = 229 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 7/116 (6%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI-----RVFSDGRDPEVQGE-VF 147 G DD + KP RE++AR+ A+ RR +V + +E I V D + + + + Sbjct: 95 GADDYITKPFSPREVIARLKAVLRRSQVDHQVSEEADIIKIQDLVIDDNKKVVTKADKIL 154 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 L RE +L Y G+ + + I +A++G ++ E +V+ HIS LR+K+ Sbjct: 155 TLTPREYELLLYFAQRIGRVIDRETILTAVWG-YEYTGESRMVDMHISNLREKIET 209 >gi|320533912|ref|ZP_08034489.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133876|gb|EFW26247.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 239 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 24/222 (10%) Query: 18 LFGDDGVSLEGFNS--LEFEEWLQSSAREDVSAIEAF-----------LIGKGEKVLELP 64 L DD SL LE E + + + A++ F L+ G +E+ Sbjct: 19 LVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDTFHEVNPDLVLLDLMLPGLDGVEIC 78 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SN 123 R+IR+ S VP+I ++ Q + ++G DD V KP +E+LARV+ RR + Sbjct: 79 RLIRSESDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNPGAA 138 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 G + + G + + L E +L L + K + ++ S ++G + Sbjct: 139 EHVRAGDLDIDVAGHQVKRGESIISLTPLEFELLVTLARSPWKVFTREELLSQVWG-YQH 197 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSI 220 + +V H+ +LR K+ DP V + R +GY + Sbjct: 198 PADTRLVNVHVQRLRAKIEK----DPERPSIVVTVRGVGYRV 235 >gi|312829152|emb|CBX33994.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] Length = 224 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 7/159 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121 R +R S VP++ +S + + + G DD + KP + ++A++ AIYRR+ Sbjct: 64 RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R T V +D +G + L + E ILE L+ + + V++ I +A++ Sbjct: 124 EEKRTLTWQDAVVDLSKDSIQKGDDTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 182 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DEA V +N + ++++LRKKL +++K GY Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGY 220 >gi|282880384|ref|ZP_06289095.1| response regulator receiver domain protein [Prevotella timonensis CRIS 5C-B1] gi|281305740|gb|EFA97789.1| response regulator receiver domain protein [Prevotella timonensis CRIS 5C-B1] Length = 231 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/138 (25%), Positives = 71/138 (51%), Gaps = 6/138 (4%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A + +P+I ++ + T+ F+ G DD ++KP RE+L R+ A+ RR + N + Sbjct: 75 ATAHIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRIRAVIRRTAETENHEQP 134 Query: 129 GPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 ++ + D + V G+ P + E +L L++ +G ++ ++ I+ D Sbjct: 135 KVLKYQGLEMNLDRKTVTVDGKDVPFTKTEFELLHLLLSEKGHVFSRQELIDRIWPK-DV 193 Query: 184 AVEENVVESHISKLRKKL 201 V + V+ +I++LRKK+ Sbjct: 194 LVLDRTVDVNITRLRKKI 211 >gi|302558338|ref|ZP_07310680.1| DNA-binding response regulator TcrA [Streptomyces griseoflavus Tu4000] gi|302475956|gb|EFL39049.1| DNA-binding response regulator TcrA [Streptomyces griseoflavus Tu4000] Length = 220 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 16/159 (10%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A VP++ ++ + D+G DD + KP + ++AR+ A+ RR A Sbjct: 69 AGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRR-----RPAGA 123 Query: 129 GPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 P+ V D + VF L +E +LE+L+ G+ V+K I ++ Sbjct: 124 SPVHVHGDLKVDTAARRVFLGEDEVALTAKEFSVLEHLVLRAGEVVSKADILEHVWDFAY 183 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E + N+VE +IS LR+KLR +L + + R GY ++ Sbjct: 184 EG-DPNIVEVYISALRRKLRARL----IRTVRGAGYRLE 217 >gi|251790511|ref|YP_003005232.1| DNA-binding transcriptional activator KdpE [Dickeya zeae Ech1591] gi|247539132|gb|ACT07753.1| two component transcriptional regulator, winged helix family [Dickeya zeae Ech1591] Length = 229 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 18/160 (11%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R S +P+I +S Q +D D+G +D + KP E+LAR RR VS + Sbjct: 69 RDLRQWSTIPVIVLSARTDEQDKIDALDAGAEDYLTKPFGIGELLARSRVALRR--VSAS 126 Query: 125 RAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ET P+ FS+ R + L E R+L L+AN GK + + Q+ + ++ Sbjct: 127 QQET-PLITFSNVTVDLINRQVLRNQQELHLTPIEFRLLSTLLANPGKVLTQRQLLNQVW 185 Query: 179 GLFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216 G N VE SH ++ LR KL DP + FL Sbjct: 186 G-------PNAVEHSHYLRIYMGHLRQKLEGDPARPRHFL 218 >gi|152964864|ref|YP_001360648.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151359381|gb|ABS02384.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 226 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 14/169 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ R +R S VP+I ++ S + + G DD V KP RE+LARV A+ RR Sbjct: 62 EVCRQLRTRSSVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVRAVLRRGAE 121 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E G +R+ D V+GE PLP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEDLVQTTVEAGGVRMDVDRHVVTVRGERVPLPLKEFELLELLLRNAGRVLTRVQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 +G D + ++ H+ K+LR K+ DP + + R LGY + Sbjct: 182 WG-SDYVGDTKTLDVHV----KRLRAKIEPDPANPRHLVTVRGLGYKFE 225 >gi|325479533|gb|EGC82629.1| response regulator receiver domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 225 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 3/162 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + I P+I +S S++ ++ G DD + KP E++ARV A+ RR Sbjct: 62 IEVLKTIGNDRDFPIIFLSAKSSVKDKIEGLYLGADDYLAKPFDPAELVARVIALLRRNN 121 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 SNN + G + D R G V L +E +L M GK K +I+ ++ Sbjct: 122 HRSNNIIKVGNLSWDKDKRLIYKNGNVLNLRSKEYELLTMFMTTPGKVFTKQEIYENLWQ 181 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++N + HIS LR+K+ N + + R LGY + Sbjct: 182 SY-YFEDDNTIMVHISNLREKIEDNPRSPTKIITIRGLGYML 222 >gi|315650118|ref|ZP_07903194.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eubacterium saburreum DSM 3986] gi|315487610|gb|EFU77917.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eubacterium saburreum DSM 3986] Length = 230 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 13/149 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123 IR S +P++ + + + +G DD + KP E+LAR+ ++ RR + N Sbjct: 67 IRKESCIPVLMFTAKNDSFSKVRGLRNGADDYMTKPFVMEELLARIISLIRRYTMFNRNG 126 Query: 124 NRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179 N A+T + + D R + F LP +E +L + N+G+ + K QI+ ++G Sbjct: 127 NEAKTLNYDGLIIDLDTRSFTTEKGTFELPPKEFDLLLFCAKNQGRIMTKQQIYEKVWGE 186 Query: 180 --LFDEAVEENVVESHISKLRKKLRNKLG 206 ++D++ N++ S IS+LRKKL G Sbjct: 187 PYVYDDS---NIM-SVISRLRKKLETDPG 211 >gi|311106092|ref|YP_003978945.1| transcriptional regulator ResD [Achromobacter xylosoxidans A8] gi|310760781|gb|ADP16230.1| transcriptional regulatory protein ResD [Achromobacter xylosoxidans A8] Length = 242 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 92/215 (42%), Gaps = 24/215 (11%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L +GY DG EG LE W A+ L+ G LE+ + RA Sbjct: 24 LRDEGYAVEHAADGN--EGMRRLEEGSW---------DALVLDLMLPGIDGLEICKRARA 72 Query: 70 HSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRA 126 ++ P+I S S + + G DD + KP E++ARV A+ RR N R Sbjct: 73 MARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRSDALERNARI 132 Query: 127 ETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + + DP EV G L RE +L + + K ++ + + ++G Sbjct: 133 DAGSLALHGVSLDPVARTAEVDGRRLDLTPREFDLLHFFARHPDKVYSRMDLLNQVWGYQ 192 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 E E+ V +HI++LR K+ DP D +R L Sbjct: 193 HEGY-EHTVNTHINRLRTKIEA----DPSDPQRIL 222 >gi|290352199|dbj|BAI78810.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRSADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|228961087|ref|ZP_04122714.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798632|gb|EEM45618.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 229 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 67/152 (44%), Gaps = 8/152 (5%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S+VP+I ++ TL F+ G DD V KP +LAR + KV+ Sbjct: 64 VCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKVT 123 Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I V R V L E IL Y + N+G + + Q+ S Sbjct: 124 KQLLENEDDILSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFIKNQGIVLTREQLIS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 I+G ++ A ++ V SHI LR KL K + Sbjct: 184 RIWG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|172036610|ref|YP_001803111.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171698064|gb|ACB51045.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 231 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 99/217 (45%), Gaps = 15/217 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 RAL++ YI + DG E N L ++ I +L+ K + + +I Sbjct: 18 RALIQHNYIVDWAQDG---EEANDL-----IEIGLNLYTIGIFDWLLPKISGIDLIKKIR 69 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 + +S +P++ ++ + + D+G DD + KP E+LAR+ A+ RR N + Sbjct: 70 QQNSFLPILMLTAKDREEDKVIGLDAGADDYLVKPFGMAELLARLRALQRRFPTINPQKL 129 Query: 128 T-GPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 T G I + Q E L +E ++LEY M + + + + QI S ++ Sbjct: 130 TVGKITLDYSNYTIYFQEETGDNKPLSLTNKEFQLLEYFMKHPNQIITRDQILSQLWEWG 189 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E + NVV + I LR+KL + +++ LGY Sbjct: 190 NEPM-SNVVAAQIRLLRRKLEPSGMENCIETVYGLGY 225 >gi|196037899|ref|ZP_03105209.1| regulatory protein VanRB [Bacillus cereus NVH0597-99] gi|196031169|gb|EDX69766.1| regulatory protein VanRB [Bacillus cereus NVH0597-99] Length = 220 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 5/160 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R R + P++ ++ + + FD+ DD V KP + +L RV A+ RR Sbjct: 63 ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + + E L +E IL L+ N G+ ++ I S ++G + Sbjct: 123 VAKELHYGKLTILPEDFNVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + + V +HI LR KL + + + + R +GY ++ Sbjct: 182 DFDGDGSTVHTHIKNLRAKLPDNI----IKTVRGVGYRLE 217 >gi|167756876|ref|ZP_02429003.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402] gi|237734586|ref|ZP_04565067.1| two-component system response regulator [Mollicutes bacterium D7] gi|167703051|gb|EDS17630.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402] gi|229382406|gb|EEO32497.1| two-component system response regulator [Coprobacillus sp. D7] Length = 223 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 3/162 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL ++ VP+I ++ + L F G DD V KP E++ARV A+ +R Sbjct: 62 FELVENLKEFKDVPVIMLTAKGESKDKLRGFSVGADDYVVKPFDPTELMARVRAVLKRYS 121 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V ++N + + D + Q E+ LP ++ ++ L + + ++ Q+ I+G Sbjct: 122 VNTSNIIKLNEVEFDGDKYEIRYQSEIIHLPLKQFELVFELAKHPDQIFSREQLIEKIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D + V+ HI ++R+ L + GF V + R LGY ++ Sbjct: 182 M-DYDGFDRTVDVHIKRIRENLGHLPGFKVV-TVRGLGYKVE 221 >gi|146283738|ref|YP_001173891.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri A1501] gi|145571943|gb|ABP81049.1| DNA-binding response regulator CzrR [Pseudomonas stutzeri A1501] Length = 243 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 104/225 (46%), Gaps = 32/225 (14%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRI 66 + L++ GY DG L+GF+ L D+ ++ L G +VLEL Sbjct: 37 QGLIECGYTVDCVSDG--LDGFH-------LALQNDYDIVLLDVNLPTMDGWEVLEL--- 84 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118 IR Q +I ++ L+ + +SG DD + KP E+LAR+ + RR Sbjct: 85 IRRRKQTRVIMLTANGRLEQKVRGLESGADDYMVKPFQFPELLARIRTLLRRGEAVALPS 144 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 L+V++ + G R + G+ ++ + F L L LM G+ + +T+I + + Sbjct: 145 NLRVADLELDPGRHRAYRSGQRIDLTSKEFAL-------LHLLMRRTGEVLTRTEITALV 197 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + FD + NVV+ I +LR K+ G + + R +GY ++ Sbjct: 198 WDINFD--CDTNVVDVAIRRLRMKVDEPFGDRLIHTIRGVGYVLE 240 >gi|24115318|ref|NP_709828.1| DNA-binding transcriptional regulator BasR [Shigella flexneri 2a str. 301] gi|30064682|ref|NP_838853.1| DNA-binding transcriptional regulator BasR [Shigella flexneri 2a str. 2457T] gi|110807888|ref|YP_691408.1| DNA-binding transcriptional regulator BasR [Shigella flexneri 5 str. 8401] gi|300920895|ref|ZP_07137289.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|24054618|gb|AAN45535.1| transcriptional regulatory protein [Shigella flexneri 2a str. 301] gi|30042941|gb|AAP18664.1| transcriptional regulatory protein [Shigella flexneri 2a str. 2457T] gi|110617436|gb|ABF06103.1| Transcriptional Regulatory protein basR/pmrA [Shigella flexneri 5 str. 8401] gi|281603423|gb|ADA76407.1| Transcriptional regulatory protein [Shigella flexneri 2002017] gi|300412123|gb|EFJ95433.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|313648696|gb|EFS13136.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri 2a str. 2457T] gi|332752050|gb|EGJ82443.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri 4343-70] gi|332752221|gb|EGJ82613.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri K-671] gi|332753248|gb|EGJ83629.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri 2747-71] gi|332764810|gb|EGJ95039.1| transcriptional regulatory protein BasR [Shigella flexneri 2930-71] gi|332999212|gb|EGK18799.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri K-218] gi|333010364|gb|EGK29797.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri VA-6] gi|333011063|gb|EGK30477.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri K-272] gi|333012744|gb|EGK32124.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri K-227] gi|333014176|gb|EGK33532.1| transcriptional regulatory protein basR/pmrA [Shigella flexneri K-304] Length = 222 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 15/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G + E QS S + L E L Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAE--QSLEDGHYSLVVLDLGLPDEDGL 60 Query: 62 E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L RI + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 NN+ E+ G + + R + GE L +E +L LM G V + +++ Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 IY +D N +E HI LR+K+G + + R GY + N Sbjct: 178 IYN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219 >gi|46190306|ref|ZP_00206421.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum DJO10A] Length = 248 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 36/218 (16%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIGISD 80 LE E + + + + A+E F I K + +L E+ R IRA S VP+I ++ Sbjct: 29 LENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDGTEVARRIRATSNVPIIMLTA 88 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---------------VSNNR 125 + ++G DD V KP E+LAR+ A +R K + N Sbjct: 89 KSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAKPAAEDGATGGASGGNANVNH 148 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E GPI + G+ L E +L L A G+ ++++ + ++G ++ + Sbjct: 149 LERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGEAISRSSLLKNVWG-YENSG 207 Query: 186 EENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 + +V H+ +LR K+ + DP V + R +GY Sbjct: 208 DTRLVNVHVQRLRAKVED----DPENPQIVQTVRGIGY 241 >gi|329941810|ref|ZP_08291075.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329299527|gb|EGG43427.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 217 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 13/206 (6%) Query: 23 GVSLEGFNSLEFEE------WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPL 75 G++ EG+ S++ W+ + + ++ L G G KV R R + P+ Sbjct: 10 GLTAEGY-SVDLAHDGRQGLWMARTGEYALVVLDLMLPGLNGYKVCAQLR--REGNATPI 66 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVF 134 + ++ + D+G DD + KP + ++AR+ A+ RR V+ G + + Sbjct: 67 LVLTAKDGEWDQAEALDTGADDYLAKPFSYLVLVARLRALVRRAATVAPPVLAVGDLSLD 126 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 GR G L RE +LE L G+ V+K + + DEAV+ N+VE+ + Sbjct: 127 VAGRVCRRAGTRVDLTPREFAVLELLARRAGQAVSKGDLL--YHAWPDEAVDPNLVEARV 184 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSI 220 S LRKK+ + + R GY + Sbjct: 185 SSLRKKVDTAFRRQSLQTVRGTGYRL 210 >gi|313114393|ref|ZP_07799922.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623287|gb|EFQ06713.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 226 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 15/230 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 +F+L DD +L+ G F G +L+ +L E L S + D+ ++ L G G Sbjct: 4 LFLLEDDLSLIS-GLTFAFKKQGFALDTARTLAEAEVLWSDRKYDLLVLDVSLPDGSG-- 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + + +R S VP++ ++ + + G DD + KP +L+RV A+ RR Sbjct: 61 -FDFCQKVRRTSNVPILFLTASDEEMNIIMGLELGGDDYLTKPFKLGVLLSRVNALLRRA 119 Query: 120 KVSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S+ E+G I V G + L E ++L + M + ++K QI A Sbjct: 120 NASSAGEPVLESGSITVRLLQGQAYKNGILLELTGAEYKLLCFFMQHPNAVLSKEQILDA 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL---GYSIDWN 223 ++ + ++ + + +I +LR K+ + DP + L G WN Sbjct: 180 LWDCDGDYIDSSALTVYIRRLRMKIED----DPGKPQMLLTVRGMGYKWN 225 >gi|310830243|ref|YP_003965343.1| two component transcriptional regulator [Ketogulonicigenium vulgare Y25] gi|308753149|gb|ADO44292.1| two component transcriptional regulator [Ketogulonicigenium vulgare Y25] Length = 223 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 8/162 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L RI A + +P+I ++ L ++ G DD + KP E+ AR++A+ RR + Sbjct: 63 LRRIRAAGASLPVIILTARDDLSERVNLLHIGADDFMMKPFAVAELEARLSALLRR-RAG 121 Query: 123 NNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G + G+ E+ G L RE +L L+ G ++K QI + + G Sbjct: 122 HAQGIFRCGSLTYHQHGQRFELGGAPLHLSPREHALLRLLIQRAGDPLSKAQILARLVG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 D+ + VE + +LR+KL G D + + R LGY +D Sbjct: 181 DDKDLNPEAVEGMVYRLRRKLE---GSDTAIQTIRGLGYMLD 219 >gi|295705449|ref|YP_003598524.1| two-component response regulator BceR [Bacillus megaterium DSM 319] gi|294803108|gb|ADF40174.1| two-component response regulator BceR [Bacillus megaterium DSM 319] Length = 230 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 77/146 (52%), Gaps = 15/146 (10%) Query: 65 RIIRAHSQVPLIGIS--DYPS-LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R+IR+HS++P+I +S D+PS + ++ F G DD V KP H ++A++ A+ RR V Sbjct: 65 RMIRSHSKIPIIFLSSRDHPSDMVMSMQF---GADDFVQKPFHFDVLVAKIQALLRR--V 119 Query: 122 SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N E + + + + L + E IL+YL+ + V++ ++ + Sbjct: 120 YNYSVEQVNLLSWQGATIDYEKNKISTESTAIDLTKNEIFILKYLIQKKNTIVSRDELIN 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 +++ + +N + ++++LRKKL Sbjct: 180 SLWE-DKRFISDNTLTVNVNRLRKKL 204 >gi|257866993|ref|ZP_05646646.1| two component transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873327|ref|ZP_05652980.1| two component transcriptional regulator [Enterococcus casseliflavus EC10] gi|257801049|gb|EEV29979.1| two component transcriptional regulator [Enterococcus casseliflavus EC30] gi|257807491|gb|EEV36313.1| two component transcriptional regulator [Enterococcus casseliflavus EC10] Length = 228 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 3/152 (1%) Query: 52 FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 ++ K + + L + + + + P+I ++ + + D+G DD + KP +E+LAR Sbjct: 52 IMLPKIDGITLLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLAR 111 Query: 112 VAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + ++ RR L ++ G + + + L +E +++E ++ ++ Sbjct: 112 IRSLSRRKDLDYQEDQLAFGNVVLARNELQLATTTNQVVLSPKEMKLMELFLSRPKVILS 171 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 K I + I+G FD VEEN VE ++S LRKKL Sbjct: 172 KETIINKIWG-FDPDVEENRVEIYVSLLRKKL 202 >gi|218282490|ref|ZP_03488749.1| hypothetical protein EUBIFOR_01331 [Eubacterium biforme DSM 3989] gi|218216586|gb|EEC90124.1| hypothetical protein EUBIFOR_01331 [Eubacterium biforme DSM 3989] Length = 214 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/161 (21%), Positives = 82/161 (50%), Gaps = 8/161 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + IR S +P++ ++ + + + +D + + D + KP + AR+ A+ ++ Sbjct: 60 LDVLKEIRKESDLPVLILTAFSNEEFKIDAYTNLADGYIEKPFSLPVLKARIDALLQKQD 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + ++ ++ G+ + +E IL+YL+ N G + + QI ++ Sbjct: 120 IFAYKNVCVNFKSYT----AKIDGKTIDINAKELEILKYLLDNAGIALTRAQILDHVWKD 175 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRK KLG D + + R +GY ++ Sbjct: 176 SEEVPYDRVIDVYIKELRK----KLGLDCITTIRNVGYKLE 212 >gi|167750198|ref|ZP_02422325.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702] gi|167656760|gb|EDS00890.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702] Length = 235 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 60/242 (24%), Positives = 104/242 (42%), Gaps = 34/242 (14%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 +++DD + D +DG ++ F N ++ + ++S D++ ++ L G + Sbjct: 5 ILIVDDEKEIADLIEVYLENDGYTVHKFYNGMDALKCIESQNL-DLAILDVMLPDIDGFR 63 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + + IR P+I ++ + G DD + KP + E++ARV RR Sbjct: 64 ICQK---IREQYYYPIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRY 120 Query: 120 KVSNNRAET----GPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 NN A T PI + + + G+ L E IL YL NRGK Sbjct: 121 VRYNNAANTEEKDAPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKV 180 Query: 168 VAKTQIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYS 219 ++ ++F I+G D N V +HI +LR+KL +P +F+ GY+ Sbjct: 181 ISSEELFENIWGEKFLD---NNNTVMAHIGRLREKLN-----EPAKKPKFIKTVWGVGYT 232 Query: 220 ID 221 I+ Sbjct: 233 IE 234 >gi|149198529|ref|ZP_01875573.1| DNA-binding response regulator [Lentisphaera araneosa HTCC2155] gi|149138244|gb|EDM26653.1| DNA-binding response regulator [Lentisphaera araneosa HTCC2155] Length = 226 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 102/207 (49%), Gaps = 13/207 (6%) Query: 1 MFVLI-DDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFL--IGK 56 M VLI +D L+++G + +F D+G + E N E + L + + D ++ + I Sbjct: 1 MKVLIAEDDILIREGLVDIFEDEGYQIAEAANGREALD-LYHNEKPDFICLDIMMPEING 59 Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 + E+ ++ S +P+I +S + L F+ G DD + KP +E++ARV A+ Sbjct: 60 YDVCREIRKV---DSDIPVIFLSAKSQEEDKLQGFELGADDYITKPFGIKEVIARVRAVT 116 Query: 117 RR-LKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR LK ++ T + + G + V L R+ +ILE+L + + V++ Q Sbjct: 117 RRCLKSTSTTQRTFSMADLTINPKGLSCTREEHVIELGLRDIKILEHLYKHANEAVSRQQ 176 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRK 199 +F + + + + ++ IS+LRK Sbjct: 177 LFQSCWEM-EFTGNTRSIDQKISQLRK 202 >gi|110798695|ref|YP_695502.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168211129|ref|ZP_02636754.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|110673342|gb|ABG82329.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|170710848|gb|EDT23030.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] Length = 226 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 79/165 (47%), Gaps = 7/165 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S+VP+I ++ ++ + D+G DD + KP E+LAR+ ++ + Sbjct: 61 LEVLRRIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKK-R 119 Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFS 175 V + + IR R + G+ L RE +L+ LM N+ + + + Sbjct: 120 VFTVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G ++ E NV++ ++ LR K+ + + + R +GY I Sbjct: 180 KVCG-YNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVI 223 >gi|86739024|ref|YP_479424.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86565886|gb|ABD09695.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 239 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 13/192 (6%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVD 96 L +AR D+ ++ L E+ R +RA VP++ +S + + + G D Sbjct: 43 LAVAARPDLMILDVML--PDIDGFEICRRLRADGHPVPVVYLSARNAHRDKIAGLTYGGD 100 Query: 97 DVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV--FSDGR-DPEVQ-----GEVFP 148 D V KP E+LARV A+ RR P F+D DP+ GE Sbjct: 101 DYVTKPFAVDELLARVRAVLRRTSPPPAEPAPAPPSPLRFADVELDPDAHLVRRAGEPID 160 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L E +L Y + N + +++TQI A++ +D E +V+ ++S LR+KL + G Sbjct: 161 LSPTEFSLLRYFLTNPNRVLSRTQILDAVWS-YDYGGESTIVDQYVSYLRRKL-GRHGPS 218 Query: 209 PVDSKRFLGYSI 220 + ++R GY + Sbjct: 219 LIHTQRGFGYVL 230 >gi|51874343|gb|AAU12846.1| putative response regulator [Clostridium cellulovorans] Length = 223 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 3/116 (2%) Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSN-NRAETGPIRVFSDGRDPEVQGE 145 L F+ G +D + KP E+ AR+ AI + + K+ N E I++ + + E Sbjct: 98 LKAFNLGANDYLTKPFFLEELKARIIAILKSMGKIKKENLIEFMDIQIDIKTKTAYIGDE 157 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + + ++LEYL+ N+G + K QIF + G +A E ++E +IS+LRK+L Sbjct: 158 KLDINEKSYKLLEYLVINKGVLLFKEQIFDNVCGYGSDASTE-IIEVYISRLRKQL 212 >gi|328463725|gb|EGF35301.1| two-component response regulator [Lactobacillus rhamnosus MTCC 5462] Length = 224 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 3/152 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRA 126 R +P++ I+ + + F+SG+DD + KPI+ E+L R+ A+ RR K++ +N Sbjct: 69 RTDPSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLRRAKITADNLL 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + ++ +V + + RE +IL L++ ++ ++ + + L + Sbjct: 129 IVGNLTLNNEAITAQVNHQTVDVTVREFQILYKLLSYPDHAFSRAELINEFWDLASDT-S 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ +I+KLR+K + GF + + LGY Sbjct: 188 MRAVDVYITKLREKFKAADGF-TIKTIHGLGY 218 >gi|290769859|gb|ADD61631.1| putative protein [uncultured organism] Length = 230 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 75/144 (52%), Gaps = 13/144 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + +P++ + + + +G DD + KP E++AR+A++ RR N++A Sbjct: 67 IRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNHQA 126 Query: 127 ------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179 + +++ + R + F LP +E +L Y ++GK + K QI+ ++G Sbjct: 127 GAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVWGE 186 Query: 180 --LFDEAVEENVVESHISKLRKKL 201 +D++ N++ + IS+LRKKL Sbjct: 187 EYFYDDS---NIM-AIISRLRKKL 206 >gi|291086647|ref|ZP_06356333.2| QseB [Citrobacter youngae ATCC 29220] gi|291067320|gb|EFE05429.1| QseB [Citrobacter youngae ATCC 29220] Length = 234 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 21/227 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G ++ E S + ++ L + + + Sbjct: 15 ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQCLESGHYSLVVLDLGLPDE-DGLH 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 L RI + VP++ ++ +++ + D G DD + KP E+ AR+ A+ RR Sbjct: 74 FLNRIRQKKYTVPVLILTARDTVKDRVSGLDVGADDYLVKPFALEELHARIRALLRRHNN 133 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 L VSN G +V+ DG+ E+ P +E +L LM G V + + Sbjct: 134 QGESELIVSNLTLNIGRRQVWMDGQ------EIILTP-KEYALLSRLMLKAGSPVHREIL 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ IY +D N +E HI LR+K+G + + R GY + Sbjct: 187 YNDIYS-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 228 >gi|262164591|ref|ZP_06032329.1| DNA-binding response regulator [Vibrio mimicus VM223] gi|262026971|gb|EEY45638.1| DNA-binding response regulator [Vibrio mimicus VM223] Length = 236 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I RA +P++ ++ + + D G D+ + KP E+LAR+ I RR S Sbjct: 81 LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 137 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE G + + ++ + L R E +IL LM G+ ++K + A++ Sbjct: 138 SGSAEELISVGELNLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 197 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +DE +N +E HI LRKKL + L + + R +GY I+ Sbjct: 198 G-WDEGSSDNAIEVHIHNLRKKLPDNL----IKNVRGVGYMIE 235 >gi|213582579|ref|ZP_03364405.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 239 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 61 LMLPGIDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 120 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K + AE+ P+ + G+ L E R+L+ L GK Sbjct: 121 KTILRRCKPQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVF 179 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 180 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 213 >gi|206977756|ref|ZP_03238647.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962018|ref|YP_002340588.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141265|ref|ZP_04269803.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST26] gi|206744057|gb|EDZ55473.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065662|gb|ACJ79912.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228642046|gb|EEK98339.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST26] Length = 230 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 56/202 (27%), Positives = 93/202 (46%), Gaps = 18/202 (8%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + L+K+G+ DG EG N+ +LQ S D+ ++ + LE+ RII Sbjct: 20 KYLIKEGFQVTIASDGE--EGVNT-----YLQGSF--DLIILDIMM--PKLDGLEVVRII 68 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNRA 126 R S VP++ +S + G DD + KP E+ ARV A I R K S Sbjct: 69 REKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKYSATET 128 Query: 127 ETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 I++ DP E G+ L +E IL+ + N+ + K QI++ I+ Sbjct: 129 TEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTLIWN-E 187 Query: 182 DEAVEENVVESHISKLRKKLRN 203 + ++NV+ H+ +LR+K+ + Sbjct: 188 EYYGDDNVINVHMRRLREKIES 209 >gi|126658660|ref|ZP_01729806.1| OmpR subfamily protein [Cyanothece sp. CCY0110] gi|126620097|gb|EAZ90820.1| OmpR subfamily protein [Cyanothece sp. CCY0110] Length = 233 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 105/222 (47%), Gaps = 16/222 (7%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + LV + YI + DGV E + L+ EW S AI +L+ K LEL + + Sbjct: 18 QVLVSEKYIVDWVVDGV--EAWRYLD-NEWTDYSV-----AIIDWLLPKLSG-LELCQRL 68 Query: 68 RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R++ +P++ ++ + + D+G DD + KP E+LAR+ A+ RR + Sbjct: 69 RSYQNPLPVLMLTALGQPENRIAGLDAGADDYLVKPFIMEELLARLRALQRRSPQFQPQT 128 Query: 127 ETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 T D + ++ PL +E +I YLM + + ++ +++ + ++ L Sbjct: 129 LTIGKFTLDDANNALCVNITEPSQIIPLTVKEFQIFAYLMKHPDRIISGSKMRNQLWDLD 188 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E + NVV + + +R+KL + P+++ R GY + N Sbjct: 189 AEPM-SNVVAAQMRLIRRKLASYNCICPIETIRGQGYRFNSN 229 >gi|121585926|ref|ZP_01675719.1| DNA-binding response regulator [Vibrio cholerae 2740-80] gi|153215679|ref|ZP_01950075.1| DNA-binding response regulator [Vibrio cholerae 1587] gi|153801271|ref|ZP_01955857.1| DNA-binding response regulator [Vibrio cholerae MZO-3] gi|121549862|gb|EAX59882.1| DNA-binding response regulator [Vibrio cholerae 2740-80] gi|124114662|gb|EAY33482.1| DNA-binding response regulator [Vibrio cholerae 1587] gi|124123186|gb|EAY41929.1| DNA-binding response regulator [Vibrio cholerae MZO-3] gi|327486060|gb|AEA80466.1| DNA-binding response regulator [Vibrio cholerae LMA3894-4] Length = 218 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I RA +P++ ++ + + D G D+ + KP E+LAR+ I RR S Sbjct: 63 LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 119 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE G + + ++ + L R E +IL LM G+ ++K + A++ Sbjct: 120 SGSAEELISVGDLDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +DE +N +E HI LRKKL + L V + R +GY I+ Sbjct: 180 G-WDEGSSDNAIEVHIHNLRKKLPDNL----VKNVRGVGYMIE 217 >gi|114769046|ref|ZP_01446672.1| DNA-binding response regulator [alpha proteobacterium HTCC2255] gi|114549963|gb|EAU52844.1| DNA-binding response regulator [alpha proteobacterium HTCC2255] Length = 217 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 17/207 (8%) Query: 22 DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIRAHSQVPLIGISD 80 DG ++ + LE + D+ ++ L G G L+ R ++ P+I ++ Sbjct: 19 DGHVIDHTDKLEDAIAFSDTGEYDLILLDIMLPDGDGRSFLKHHRDLK--KDTPIIVLTA 76 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD---- 136 + + D G DD V KP H E+ AR A+ RR T PI F D Sbjct: 77 RSQVSDRISILDLGADDYVTKPFDHAELDARCRAVLRR-----KSGATQPIIKFGDVTFS 131 Query: 137 --GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 + G++ L RE R+ E L+ RG+ +K ++ ++ FDE V +N +E ++ Sbjct: 132 PLAGQLSINGKIVNLRNRELRLFELLLNARGQIFSKQKLVDRLFA-FDEDVSDNAIEVYV 190 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSID 221 +LRK L + + + R LGY +D Sbjct: 191 GRLRKHLESTSL--KISTHRGLGYRLD 215 >gi|317491162|ref|ZP_07949598.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920709|gb|EFV42032.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 229 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 52/164 (31%), Positives = 75/164 (45%), Gaps = 18/164 (10%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ R +R S +P+I +S + D+G DD ++KP E+LARV RR Sbjct: 65 LDFIRDLRQWSSIPVIVLSARAEESDKVLALDAGADDYLSKPFGVAELLARVRVSLRRHA 124 Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + P+ FSD R GE L E R+L L+AN GK + + Q+ Sbjct: 125 QQNQES---PLIQFSDIEVDLINRRVTRAGEDLHLTPIEFRLLTELIANAGKVLTQRQLL 181 Query: 175 SAIYGLFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216 S+++G N VE SH ++ LR KL +P K L Sbjct: 182 SSVWG-------PNYVEHSHYLRIYMGHLRQKLEAEPARPKHLL 218 >gi|291521248|emb|CBK79541.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 227 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 3/147 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL R + ++P+I ++ S + D G DD + KP E+++RV A+ Sbjct: 60 GLDVLRKLRSMPETKKLPIILVTAKTSEIDKVKGLDVGADDYITKPFGIMELISRVKALL 119 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + VF D V +V L +E +L+ LM+N G A+ I Sbjct: 120 RRSAYVEEKKFLTLGNVFMDDEKHAVYVSDQVCELTYKEYELLKLLMSNAGIVTARDTIM 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 I+G+ D E ++ HI LRKKL Sbjct: 180 ERIWGI-DFEGESRTLDMHIKTLRKKL 205 >gi|186474207|ref|YP_001861549.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184196539|gb|ACC74503.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 251 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 22/198 (11%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQ 85 EG LE W A+ L+ G LE+ R RA ++ P+I S S Sbjct: 47 EGLRLLEQGNW---------DALILDLMLPGVDGLEICRRARAMARYTPIIITSARSSEV 97 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIR---VFSD--GR 138 + + G DD + KP E++ARV A+ RR + R E G + +F D R Sbjct: 98 HRILGLELGADDYLAKPFSVLELVARVKALLRRADAMAKDARMEAGSLNLAGLFIDPLTR 157 Query: 139 DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 + V G+ L RE +L + + GK ++ + +A++G E E+ V +HI++LR Sbjct: 158 EASVNGKRIELTPREFDLLYFFASRPGKVFSRMDLLNAVWGYQHEGY-EHTVNTHINRLR 216 Query: 199 KKLRNKLGFDPVDSKRFL 216 K+ + DP R L Sbjct: 217 AKIED----DPAQPARIL 230 >gi|56540667|gb|AAV92787.1| PmrA [Salmonella enterica] gi|56540669|gb|AAV92788.1| PmrA [Salmonella enterica] Length = 222 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 13/223 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G ++ E S + ++ L + + + Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAERSLESGHYSLMVLDLGLPDE-DGLH 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R+ + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 62 FLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRR--- 118 Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 NN+ E+ G + + ++G+ L +E +L LM G V + +++ I Sbjct: 119 HNNQGESELAVGNLTLNMGRHQAWIEGQELTLTPKEYALLSRLMLKAGSPVHREILYNDI 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Y +D N +E HI LR+K+G + + R GY + Sbjct: 179 YN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216 >gi|16761060|ref|NP_456677.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141243|ref|NP_804585.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213160755|ref|ZP_03346465.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416998|ref|ZP_03350142.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213648513|ref|ZP_03378566.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289805497|ref|ZP_06536126.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|25300978|pir||AH0771 probable two-component system response regulator STY2344 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503358|emb|CAD02494.1| putative two-component system response regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29136869|gb|AAO68434.1| putative two-component system response regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 240 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGIDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K + AE+ P+ + G+ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|15926336|ref|NP_373869.1| hypothetical protein SA0614 [Staphylococcus aureus subsp. aureus N315] gi|21282350|ref|NP_645438.1| hypothetical protein MW0621 [Staphylococcus aureus subsp. aureus MW2] gi|49485531|ref|YP_042752.1| putative response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|148267118|ref|YP_001246061.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150393166|ref|YP_001315841.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156978987|ref|YP_001441246.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|253315301|ref|ZP_04838514.1| two-component response regulator [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732900|ref|ZP_04867065.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255005451|ref|ZP_05144052.2| two-component response regulator [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795078|ref|ZP_05644057.1| two-component system transcriptional regulator [Staphylococcus aureus A9781] gi|258418337|ref|ZP_05682602.1| two-component system transcriptional regulator [Staphylococcus aureus A9763] gi|258419953|ref|ZP_05682911.1| two-component response regulator [Staphylococcus aureus A9719] gi|258430827|ref|ZP_05688539.1| two-component system response regulator [Staphylococcus aureus A9299] gi|258441680|ref|ZP_05690952.1| two component transcriptional regulator [Staphylococcus aureus A8115] gi|258445884|ref|ZP_05694061.1| response regulator receiver [Staphylococcus aureus A6300] gi|258449689|ref|ZP_05697791.1| two component transcriptional regulator [Staphylococcus aureus A6224] gi|258454090|ref|ZP_05702062.1| two-component response regulator [Staphylococcus aureus A5937] gi|269202279|ref|YP_003281548.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ED98] gi|282894423|ref|ZP_06302652.1| two-component system, OmpR family, response regulator [Staphylococcus aureus A8117] gi|282926521|ref|ZP_06334151.1| two-component system, OmpR family, response regulator [Staphylococcus aureus A10102] gi|295407439|ref|ZP_06817235.1| two-component system [Staphylococcus aureus A8819] gi|296274723|ref|ZP_06857230.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MR1] gi|297208617|ref|ZP_06925046.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246561|ref|ZP_06930397.1| two-component system [Staphylococcus aureus A8796] gi|300912709|ref|ZP_07130152.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|81696362|sp|Q6GBH1|GRAR_STAAS RecName: Full=Response regulator protein graR; AltName: Full=Glycopeptide resistance-associated protein R gi|81704638|sp|Q7A1L2|GRAR_STAAW RecName: Full=Response regulator protein graR; AltName: Full=Glycopeptide resistance-associated protein R gi|81855981|sp|Q99VW2|GRAR_STAAN RecName: Full=Response regulator protein graR; AltName: Full=Glycopeptide resistance-associated protein R gi|205780064|sp|A6TZD6|GRAR_STAA2 RecName: Full=Response regulator protein graR; AltName: Full=Glycopeptide resistance-associated protein R gi|205780136|sp|A5IQL2|GRAR_STAA9 RecName: Full=Response regulator protein graR; AltName: Full=Glycopeptide resistance-associated protein R gi|205782398|sp|A7WZC3|GRAR_STAA1 RecName: Full=Response regulator protein graR; AltName: Full=Glycopeptide resistance-associated protein R gi|13700550|dbj|BAB41847.1| SA0614 [Staphylococcus aureus subsp. aureus N315] gi|21203787|dbj|BAB94486.1| MW0621 [Staphylococcus aureus subsp. aureus MW2] gi|49243974|emb|CAG42400.1| putative response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|78771603|dbj|BAE47968.1| Two-component response regulator [Staphylococcus aureus] gi|147740187|gb|ABQ48485.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149945618|gb|ABR51554.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156721122|dbj|BAF77539.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|253729080|gb|EES97809.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257789050|gb|EEV27390.1| two-component system transcriptional regulator [Staphylococcus aureus A9781] gi|257839130|gb|EEV63609.1| two-component system transcriptional regulator [Staphylococcus aureus A9763] gi|257844036|gb|EEV68427.1| two-component response regulator [Staphylococcus aureus A9719] gi|257849499|gb|EEV73469.1| two-component system response regulator [Staphylococcus aureus A9299] gi|257852149|gb|EEV76076.1| two component transcriptional regulator [Staphylococcus aureus A8115] gi|257855460|gb|EEV78398.1| response regulator receiver [Staphylococcus aureus A6300] gi|257857197|gb|EEV80096.1| two component transcriptional regulator [Staphylococcus aureus A6224] gi|257863955|gb|EEV86711.1| two-component response regulator [Staphylococcus aureus A5937] gi|262074569|gb|ACY10542.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ED98] gi|282591414|gb|EFB96486.1| two-component system, OmpR family, response regulator [Staphylococcus aureus A10102] gi|282763136|gb|EFC03267.1| two-component system, OmpR family, response regulator [Staphylococcus aureus A8117] gi|285816359|gb|ADC36846.1| Two-component response regulator BceR [Staphylococcus aureus 04-02981] gi|294967720|gb|EFG43753.1| two-component system [Staphylococcus aureus A8819] gi|296886872|gb|EFH25776.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176592|gb|EFH35856.1| two-component system [Staphylococcus aureus A8796] gi|300886955|gb|EFK82157.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|315128462|gb|EFT84469.1| two-component response regulator [Staphylococcus aureus subsp. aureus CGS03] gi|329724984|gb|EGG61482.1| response regulator protein GraR [Staphylococcus aureus subsp. aureus 21172] gi|329729752|gb|EGG66153.1| response regulator protein GraR [Staphylococcus aureus subsp. aureus 21193] Length = 224 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 7/159 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121 R +R S VP++ +S + + + G DD + KP + ++A++ AIYRR+ Sbjct: 64 RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R T V +D +G + L + E ILE L+ + + V++ I +A++ Sbjct: 124 EEKRTLTWQDAVVDLSKDSIQKGDDTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 182 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DEA V +N + ++++LRKKL +++K GY Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGY 220 >gi|330958232|gb|EGH58492.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 227 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 6/152 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETG 129 P++ IS + + +G DD + KP E+ ARV + RR + + + Sbjct: 74 TPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNPVSAAKTVLQVA 133 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 + + R+ GE L E ++LE+LM N G+ + + IF ++G FD N Sbjct: 134 DLELNLISREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEVWGYHFDPGT--N 191 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ HI +LRKK+ + + R GY I Sbjct: 192 LIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223 >gi|297163405|gb|ADI13117.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 226 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 13/206 (6%) Query: 23 GVSLEGFNSLEFEE------WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPL 75 G++ EG+ S++ W+ + + ++ L G G KV R R ++ P+ Sbjct: 19 GLTAEGY-SVDLAHDGRQGLWMARTGEYVLIVLDLMLPGLNGYKVCSQLR--RENNATPI 75 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVF 134 + ++ + D+G DD + KP + ++AR+ A+ RR V+ G + + Sbjct: 76 LVLTAKDGEWDQAEALDTGADDYLAKPFSYVVLVARLRALVRRAATVAPPVLAVGDLSLD 135 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 GR G L RE +LE L G+ V+KT + + DEA + N+VE+ + Sbjct: 136 VAGRVCRRAGTRVELTPREFAVLELLARRAGQAVSKTDLL--YHAWPDEAWDPNLVEARV 193 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSI 220 S LRKK+ + + R GY + Sbjct: 194 SALRKKVDAAFHRQSLQTVRGTGYRL 219 >gi|291522104|emb|CBK80397.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 237 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 9/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI---YRRLKVSN 123 IR + +P+I +S + G DD ++KP + +E++ARV A Y RL N Sbjct: 69 IRETNNIPIIILSAKTEETDKVLGLSMGADDYISKPFNTQEMIARVKAQLRRYMRLGAMN 128 Query: 124 NRAETGPIRV---FSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + IR+ + D ++ V GE L E +I+E LM+N G+ +I+ ++ Sbjct: 129 SESMQDSIRIGDLYLDKHAKELNVNGESVHLTATEYKIMELLMSNPGRVFPAEEIYERVW 188 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 +V EN V HI ++R+K+ Sbjct: 189 QEPAYSV-ENTVMVHIRRIREKI 210 >gi|187478540|ref|YP_786564.1| heavy metal sensing two-component sytem response regulator [Bordetella avium 197N] gi|115423126|emb|CAJ49657.1| heavy metal sensing two-component sytem,response regulator [Bordetella avium 197N] Length = 223 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 15/214 (7%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRII 67 L + GY DG S + FE SA D+ ++ L G G +VL R+I Sbjct: 19 GLAESGYAVTVARDGRSAQHC----FE-----SALFDLVLLDVMLPGMDGWEVL---RVI 66 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126 R + P++ +S S+Q + + G DD + KP + E+LARV ++ RR V + Sbjct: 67 RRRASTPVLFLSARDSVQDRVKGLELGGDDYLIKPFSYAELLARVRSLLRRGPVQCQDVL 126 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + + G + L +E +L L+ +G+ + +T I S ++ L + + Sbjct: 127 RLGDLEMVVGRFEVRRAGRLIRLTAKEFVLLRLLLERQGEVLTRTMIASHVW-LMNFDCD 185 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVV+ I +LR K+ + + R +GY + Sbjct: 186 TNVVDVAIRRLRMKIDEPYPDRLIHTVRGMGYRL 219 >gi|115377140|ref|ZP_01464354.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca DW4/3-1] gi|310822862|ref|YP_003955220.1| phosphate regulon transcriptional regulatory protein phob [Stigmatella aurantiaca DW4/3-1] gi|115365849|gb|EAU64870.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca DW4/3-1] gi|309395934|gb|ADO73393.1| Phosphate regulon transcriptional regulatory protein PhoB [Stigmatella aurantiaca DW4/3-1] Length = 229 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 6/133 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGPIRVFSDGRDPEVQGEVF 147 F+ G DD V KP RE++ R+ AI RR + A GP+ + V+G+ Sbjct: 94 FEVGADDYVTKPFSVRELVLRIKAILRRGTPAKEGAAPLTLGPLTLDVATHRFYVEGKEV 153 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E R+LE++M G+ + Q+ ++GL +E +++H+ +LR KL Sbjct: 154 LLTALEFRLLEHMMTRLGRVQTREQLLEEVWGL-SSNLETRTIDTHVMRLRDKLGPARAH 212 Query: 208 DPVDSKRFLGYSI 220 +++ R +GY I Sbjct: 213 --LETVRGVGYRI 223 >gi|56418841|ref|YP_146159.1| lantibiotic biosynthesis response regulator [Geobacillus kaustophilus HTA426] gi|56378683|dbj|BAD74591.1| lantibiotic biosynthesis protein (response regulator) [Geobacillus kaustophilus HTA426] Length = 232 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 10/169 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +EL IIR P++ +S + + G DD + KP +E+ AR+ + RR + Sbjct: 62 MELCTIIRDRVDYPIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDSHLRREE 121 Query: 121 V--SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 SN R + D EV +G+ PL ++E I++ LM N+ +K +IF Sbjct: 122 RIRSNERYLLSSKNITIDLLANEVFCKGKKLPLTKKEYEIVKLLMLNKKVVFSKERIFER 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDWN 223 ++G+ ++ + V ES I +RKK+++ DP S + G W+ Sbjct: 182 VWGIDSDSQLDTVTES-IKNIRKKIKD---VDPETSYIQTLYGLGYKWD 226 >gi|119716097|ref|YP_923062.1| response regulator receiver [Nocardioides sp. JS614] gi|119536758|gb|ABL81375.1| response regulator receiver [Nocardioides sp. JS614] Length = 224 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 11/141 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + VP++ +S +D D+G DD V KP E++AR+ A+ RR N Sbjct: 67 LRGWTAVPILVLSGRSDSTDKVDALDAGADDYVTKPFGMDELMARLRAMLRR----NQAV 122 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + P F D V+G+ L E +LE L+ + GK +++ Q+ ++G Sbjct: 123 DPTPAVAFGDVVVDLTATRVTVRGQEIRLTPTEWHLLEVLVRHPGKLISQRQLLLDVWGP 182 Query: 181 FDEAVEENVVESHISKLRKKL 201 E + N + ++++LR+KL Sbjct: 183 GYETAQGN-LRLYVAQLRRKL 202 >gi|15925615|ref|NP_373149.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|15928211|ref|NP_375744.1| hypothetical protein SA2418 [Staphylococcus aureus subsp. aureus N315] gi|21284274|ref|NP_647362.1| hypothetical protein MW2545 [Staphylococcus aureus subsp. aureus MW2] gi|49487403|ref|YP_044624.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|148269057|ref|YP_001248000.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150395138|ref|YP_001317813.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156980940|ref|YP_001443199.1| hypothetical protein SAHV_2609 [Staphylococcus aureus subsp. aureus Mu3] gi|253317223|ref|ZP_04840436.1| hypothetical protein SauraC_14059 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255007396|ref|ZP_05145997.2| hypothetical protein SauraM_13025 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794406|ref|ZP_05643385.1| two-component system transcriptional regulator [Staphylococcus aureus A9781] gi|258407244|ref|ZP_05680388.1| two-component system transcriptional regulator [Staphylococcus aureus A9763] gi|258420070|ref|ZP_05683027.1| two component transcriptional regulator [Staphylococcus aureus A9719] gi|258428023|ref|ZP_05688082.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|258443097|ref|ZP_05691585.1| response regulator receiver [Staphylococcus aureus A8115] gi|258445401|ref|ZP_05693590.1| two-component system response regulator [Staphylococcus aureus A6300] gi|258448960|ref|ZP_05697068.1| response regulator protein [Staphylococcus aureus A6224] gi|258453615|ref|ZP_05701592.1| two-component system response regulator [Staphylococcus aureus A5937] gi|269204260|ref|YP_003283529.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ED98] gi|282894881|ref|ZP_06303106.1| response regulator protein [Staphylococcus aureus A8117] gi|282927125|ref|ZP_06334750.1| response regulator protein [Staphylococcus aureus A10102] gi|295405325|ref|ZP_06815138.1| two-component system [Staphylococcus aureus A8819] gi|296275726|ref|ZP_06858233.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MR1] gi|297209543|ref|ZP_06925940.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244383|ref|ZP_06928273.1| two-component system [Staphylococcus aureus A8796] gi|300910556|ref|ZP_07128007.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|13702583|dbj|BAB43723.1| SA2418 [Staphylococcus aureus subsp. aureus N315] gi|14248400|dbj|BAB58787.1| similar to two-component response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|21205718|dbj|BAB96410.1| MW2545 [Staphylococcus aureus subsp. aureus MW2] gi|49245846|emb|CAG44327.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|147742126|gb|ABQ50424.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149947590|gb|ABR53526.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156723075|dbj|BAF79492.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257788378|gb|EEV26718.1| two-component system transcriptional regulator [Staphylococcus aureus A9781] gi|257841030|gb|EEV65480.1| two-component system transcriptional regulator [Staphylococcus aureus A9763] gi|257844029|gb|EEV68421.1| two component transcriptional regulator [Staphylococcus aureus A9719] gi|257849853|gb|EEV73815.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|257851703|gb|EEV75638.1| response regulator receiver [Staphylococcus aureus A8115] gi|257855661|gb|EEV78587.1| two-component system response regulator [Staphylococcus aureus A6300] gi|257857647|gb|EEV80540.1| response regulator protein [Staphylococcus aureus A6224] gi|257864091|gb|EEV86842.1| two-component system response regulator [Staphylococcus aureus A5937] gi|262076550|gb|ACY12523.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ED98] gi|282591172|gb|EFB96246.1| response regulator protein [Staphylococcus aureus A10102] gi|282762818|gb|EFC02953.1| response regulator protein [Staphylococcus aureus A8117] gi|285818288|gb|ADC38775.1| Two-component response regulator YvcP [Staphylococcus aureus 04-02981] gi|294970270|gb|EFG46288.1| two-component system [Staphylococcus aureus A8819] gi|296885682|gb|EFH24618.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297179161|gb|EFH38406.1| two-component system [Staphylococcus aureus A8796] gi|298695890|gb|ADI99112.1| probable two-component sensor response regulator [Staphylococcus aureus subsp. aureus ED133] gi|300888079|gb|EFK83273.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|312830966|emb|CBX35808.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130713|gb|EFT86698.1| hypothetical protein CGSSa03_11410 [Staphylococcus aureus subsp. aureus CGS03] gi|323440486|gb|EGA98197.1| two-component sensor response regulator [Staphylococcus aureus O11] gi|323443574|gb|EGB01189.1| two-component sensor response regulator [Staphylococcus aureus O46] gi|329723595|gb|EGG60124.1| putative response regulator protein GraR [Staphylococcus aureus subsp. aureus 21172] Length = 221 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 6/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S VP+I IS + G DD + KP + +A++ A+ RR L V+N Sbjct: 66 IRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLSVAN 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + D Q + L E +IL+ L N K V++T + + + Sbjct: 126 DSLTVKGCTLILDEAKVVYQEQNIQLSLTELQILKLLFQNEDKYVSRTALIEKCWE-SEN 184 Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 +++N + ++++LRKKL N +G D + +K+ +GY + Sbjct: 185 FIDDNTLAVNMTRLRKKL-NTIGVNDFIITKKNVGYKV 221 >gi|310641011|ref|YP_003945769.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309245961|gb|ADO55528.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 228 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 7/117 (5%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE------TGPIRVFSDGRDPEVQG 144 + G DD ++KP RE+LAR+ A+ RRL+ A GP+RV R E+ Sbjct: 92 LELGADDFMSKPFDLRELLARIKALVRRLEREGAPAPEGTEVILGPLRVRPSSRTAELGV 151 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + L +E +L L+++ G+ + + ++G+ D V+ HI +LRKKL Sbjct: 152 KALDLTPKEFDVLALLVSHTGRVYTRDDLLEQVWGI-DYVGGTRTVDIHIQRLRKKL 207 >gi|298385740|ref|ZP_06995298.1| DNA-binding response regulator [Bacteroides sp. 1_1_14] gi|298261881|gb|EFI04747.1| DNA-binding response regulator [Bacteroides sp. 1_1_14] Length = 228 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 18/168 (10%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + IR ++ ++P++ ++ S LD FD+G DD + KP RE+ AR+ + +R Sbjct: 62 ELTKEIRKSNPRIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR-- 119 Query: 121 VSNNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 VS N E V++D R D E L +E +L Y++ N + +++ +I Sbjct: 120 VSGNVPELPQELVYADLRIDLQRKDVERNNVPIKLSPKEYNLLLYMVENAERVLSRVEIA 179 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKL-RNKLGFDP--VDSKRFLGY 218 ++ FD N ++ +I+ LRKK+ RN F+P + +K +G+ Sbjct: 180 EKVWNTHFDTGT--NFIDVYINYLRKKIDRN---FEPKLIHTKAGMGF 222 >gi|225174148|ref|ZP_03728147.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225169933|gb|EEG78728.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 231 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 8/166 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S+VP+I ++ + + G DD + KP RE++ARV AI RR Sbjct: 64 DVCREVRKFSEVPIIMLTAKGEEFDKVLGLELGADDYLTKPFSPRELVARVKAILRR-AT 122 Query: 122 SNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +T + F R+ V L +E +L +L + GK + Q+ + Sbjct: 123 PEEQTDTEDVLTFPGLAINHSSREVHVDDREVTLTPKEFDLLWFLATHPGKVFTREQLLT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++G +D + V++HI +LR+K+ V + +GY + Sbjct: 183 AVWG-YDYYGDLRTVDTHIKRLREKVERDGNTPHVKTIWGVGYKFE 227 >gi|159027454|emb|CAO89419.1| ycf27 [Microcystis aeruginosa PCC 7806] Length = 246 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121 +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR++ Sbjct: 75 LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKNGAPG 134 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ G I++ ++ R E L E +LE L++ G+ ++++I ++G Sbjct: 135 IPSSGVIHIGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEVWG 194 Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203 E V+ VV+ HIS+LR KL + Sbjct: 195 YTPERHVDTRVVDVHISRLRAKLED 219 >gi|221066120|ref|ZP_03542225.1| two component transcriptional regulator PhoB, winged helix family [Comamonas testosteroni KF-1] gi|264679333|ref|YP_003279240.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|299532292|ref|ZP_07045685.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|220711143|gb|EED66511.1| two component transcriptional regulator PhoB, winged helix family [Comamonas testosteroni KF-1] gi|262209846|gb|ACY33944.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|298719700|gb|EFI60664.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 231 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 95/199 (47%), Gaps = 21/199 (10%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L +G+ ++ +DGVS + E + L DV ++ L G L L R RA Sbjct: 24 LRHNGFQPVWAEDGVSAQR----ELDAVL-----PDVILLDWML--PGASGLSLARKWRA 72 Query: 70 HSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NN 124 S+ VP++ ++ + D+G DD + KP +E+LAR+ A+ RR + Sbjct: 73 DSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRRAPEQVQD 132 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--LFD 182 + G + + + QG++ + E ++L YLM + + ++ Q+ ++G +F Sbjct: 133 KVSIGELVLDAAAHRVSWQGDLLKIGPTEFKLLNYLMKHPERVHSRAQLLDKVWGDHVF- 191 Query: 183 EAVEENVVESHISKLRKKL 201 +EE V+ H+ +LR+ L Sbjct: 192 --IEERTVDVHVKRLRESL 208 >gi|37519591|ref|NP_922968.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35210582|dbj|BAC87963.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 222 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 52/216 (24%), Positives = 98/216 (45%), Gaps = 19/216 (8%) Query: 16 IALFGDDGVSLEGFNSLEFEEWLQSSARE-----DVSAIEAFLIGKGEKVLELPRIIRAH 70 IA F + G+ G+ ++ ++++ D+ ++ L GK V+ L + Sbjct: 13 IAAFLEKGLRANGYTTIVVRNGVEAAQMASCDDFDLMILDLGLPGKAGLVV-LEEMRGRG 71 Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--- 127 ++P+I ++ + + +SG DD V KP E+LARV A R N R + Sbjct: 72 ERLPVIILTARDDIADKVAGLESGADDYVTKPFRFEELLARVRARLR--DTGNGRTQEQL 129 Query: 128 ---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 +G I + R G L RE + E M + G+ +++ + S ++G +D Sbjct: 130 VLRSGEISLDLRTRKVSAGGRTVELSAREFTLAETFMRHPGQVMSREHLLSRVWG-YDYD 188 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+V+ ++ LR+KL D +++ R +GY + Sbjct: 189 PGSNIVDVYVGYLRRKLNT----DRIETVRGMGYRL 220 >gi|157158943|ref|YP_001465919.1| DNA-binding response regulator CreB [Escherichia coli E24377A] gi|157080973|gb|ABV20681.1| transcriptional regulatory protein CreB [Escherichia coli E24377A] Length = 229 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ V + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQLVPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ ++ Sbjct: 125 FSSPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRVKLRAINPDLSPINTHRGMGYSL 226 >gi|325849613|ref|ZP_08170851.1| response regulator receiver domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480094|gb|EGC83171.1| response regulator receiver domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 218 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 7/165 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G KVLE IR S++P++ ++ + + + F + D + KP + RV ++ Sbjct: 59 GLKVLEE---IRKTSRIPVLILTAFNDEEYKISAFTNLCDGYMEKPFSLSLLKLRVESLL 115 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +R E ++ GE + +E IL++L+ N G +++ QI Sbjct: 116 KRYYGDREIFEYKDAKINFSSYKATYGGENIDMNAKELEILKFLLENEGLALSRMQIIEN 175 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ DE + V++ +I +LRK KLG D + + R +GY ++ Sbjct: 176 VWKESDEIPYDRVIDVYIKQLRK----KLGLDCIKTIRNVGYKLE 216 >gi|308067235|ref|YP_003868840.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305856514|gb|ADM68302.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 224 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 21/163 (12%) Query: 46 VSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH 105 + ++ F +GK R+ + + ++P++ +S S+ L D DD V KP H Sbjct: 54 LPGLDGFTMGK--------RLKKEYPELPILMLSARTSIDDKLQGLDFA-DDYVTKPFHP 104 Query: 106 REILARVAAIYRRL-KVSNNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEY 159 E++AR+ + RR V + G + VFS RD GE L ++ I Y Sbjct: 105 DELIARIEILLRRSGTVPEESLQLGHLSVFSPDNRIVNRD---TGEEITLTGKQYHIFAY 161 Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 L+ + G+ + K Q++ A++G D ++ + + HI LR+KL Sbjct: 162 LLRHLGQIMTKEQMYEAVWG--DPYIDGDKTLMVHIRHLREKL 202 >gi|301056729|ref|YP_003794940.1| DNA-binding response regulator [Bacillus anthracis CI] gi|300378898|gb|ADK07802.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R + +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 120 KTEVTVSHEVIEAGEITICPKERKVHVGGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 222 >gi|282898613|ref|ZP_06306601.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281196481|gb|EFA71390.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 242 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S VP+I ++ + + + G DD V KP +E+ AR+ ++ RR+ + Sbjct: 71 LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGTTG 130 Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 G I++ ++ R E L E +LE L++ G+ ++++I ++G Sbjct: 131 IPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEVWG 190 Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203 E V+ VV+ HIS+LR KL + Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215 >gi|260433981|ref|ZP_05787952.1| DNA-binding response regulator [Silicibacter lacuscaerulensis ITI-1157] gi|260417809|gb|EEX11068.1| DNA-binding response regulator [Silicibacter lacuscaerulensis ITI-1157] Length = 226 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 19/162 (11%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A + P++ ++ ++ + +G DD + KP +E+ AR+ A+ RR + S ET Sbjct: 71 AGVKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRRPQESE---ET 127 Query: 129 GPIRVFSDGRDPEV---------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ RD E+ G L RE +ILE+ + + + V++T + ++ Sbjct: 128 PTLKC----RDLEMDLLTRKVTRNGREITLTPREFQILEFFLRRKNRVVSRTMLLEGVWD 183 Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD NVV+ HISKLRK+L G +++ R GY + Sbjct: 184 YHFDPNT--NVVDVHISKLRKQLDEAGGPPLIETVRGAGYMV 223 >gi|253583816|ref|ZP_04861014.1| OmpR family response regulator [Fusobacterium varium ATCC 27725] gi|251834388|gb|EES62951.1| OmpR family response regulator [Fusobacterium varium ATCC 27725] Length = 228 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 13/147 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +IIR S +P+I ++ ++ D G DD + KP E+ AR+ R+ + Sbjct: 62 EVCKIIRKTSNIPIIVLTAKDHTLNKVELLDMGADDYLTKPFEIEELFARI-----RVAL 116 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-------PLPRRERRILEYLMANRGKRVAKTQIF 174 N T + D +++ L + E + YL+ N+ V++ +I Sbjct: 117 RNKSNFTNTDYIHYDILKLDLKTNSLYKNEKEISLTKTEYNLFHYLLLNKELVVSREKIL 176 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 + ++G +D EE +V+ +I+ LRKK+ Sbjct: 177 NEVWG-YDYMGEEKIVDVYINALRKKI 202 >gi|157736636|ref|YP_001489319.1| two-component response regulator [Arcobacter butzleri RM4018] gi|315635800|ref|ZP_07891062.1| DNA-binding response regulator [Arcobacter butzleri JV22] gi|157698490|gb|ABV66650.1| two-component response regulator [Arcobacter butzleri RM4018] gi|315479779|gb|EFU70450.1| DNA-binding response regulator [Arcobacter butzleri JV22] Length = 226 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 6/160 (3%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +EL +I++ S + ++ IS ++ ++ SG DD + KP +LAR+ A RL Sbjct: 60 IELCKIVKNRSSRTAVVIISARDDKESEIEALKSGADDFIKKPFDFDILLARIEA---RL 116 Query: 120 KV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N E + + D E GE L + +L +L +R + V+K Q+ AI+ Sbjct: 117 RFGGTNVIEIDDLVINPDEEKIEYAGEEIELKGKPFEVLTHLARHRDQIVSKEQLLDAIW 176 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E V NV+E I+++R+K+ L +++ R GY Sbjct: 177 E-EPELVTPNVIEVAINQIRQKMDKPLNISTIETIRRRGY 215 >gi|120405794|ref|YP_955623.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|160012530|sp|A1TEL7|MPRA_MYCVP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|119958612|gb|ABM15617.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 231 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 9/147 (6%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R+ +P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR Sbjct: 62 LEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQI 173 + E+ + FSD V EV L R E +LE L+AN + + +++I Sbjct: 122 TPDDGAGESAAM-TFSDLSLDPVTREVTRGDRPISLTRTEFSLLEMLIANPRRVLTRSRI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK 200 ++G FD N +E ++ LR+K Sbjct: 181 LEEVWG-FDFPTSGNALEVYVGYLRRK 206 >gi|163940332|ref|YP_001645216.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229011818|ref|ZP_04168999.1| Sensor histidine kinase [Bacillus mycoides DSM 2048] gi|229170277|ref|ZP_04297956.1| Sensor histidine kinase [Bacillus cereus AH621] gi|163862529|gb|ABY43588.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228613200|gb|EEK70346.1| Sensor histidine kinase [Bacillus cereus AH621] gi|228749449|gb|EEL99293.1| Sensor histidine kinase [Bacillus mycoides DSM 2048] Length = 231 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 13/207 (6%) Query: 27 EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+N + + +E LQ +V + ++ LE+ + +R ++ VP++ +S Sbjct: 25 EGYNIYKAYDGDEALQMICTYEVDLMLLDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135 + +G DD + KP + E++ARV A+ RR N + E G IR+ S Sbjct: 85 DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSQKNEDGIIRIRSVEIHK 144 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 +V GE L E IL L +N G+ + +IF ++ D V HIS Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203 Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221 LR KL + G + + +GY I+ Sbjct: 204 NLRDKLETVMNGEKLIHTVWGVGYKIE 230 >gi|328958564|ref|YP_004375950.1| KDP operon transcriptional regulatory protein [Carnobacterium sp. 17-4] gi|328674888|gb|AEB30934.1| KDP operon transcriptional regulatory protein [Carnobacterium sp. 17-4] Length = 228 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 12/167 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++L +I+R +P+I +S + + D G DD V KP E+LAR+ R Sbjct: 62 IDLLKIVRKRMTIPIIILSARTNELEKVKALDHGADDYVTKPFGTHELLARIRTSLRH-- 119 Query: 121 VSNNRAETGPIRVFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S N+ P D + D E Q G+ L + E RIL+ L N GK V + Sbjct: 120 -STNQVIESPTIKNKDLKIDFEKQLLYKLGKEVHLTKNEYRILKVLFENLGKVVTYNTLM 178 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +A++G + A + ++ ++S +RKK+ N L + + ++ +GY + Sbjct: 179 TAVWGPY--AGDSQILRVNMSNIRKKMEYNTLEPEYLTTEIGVGYRM 223 >gi|310827026|ref|YP_003959383.1| hypothetical protein ELI_1434 [Eubacterium limosum KIST612] gi|308738760|gb|ADO36420.1| hypothetical protein ELI_1434 [Eubacterium limosum KIST612] Length = 229 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 19/164 (11%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R +Q P++ +S + ++ G DD + KP E+LAR+ + RR + A Sbjct: 73 LRQSTQAPVLLLSSRRDYEDIVNGLTGGADDYMTKPYRIEELLARIVGLLRRREAMCPPA 132 Query: 127 ET--GPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E GP+ R F RD +Q RE IL +L+ N G+ ++ Q++ A+ Sbjct: 133 EVARGPLVMDTVAQRGFLFDRDMLLQP-------REYAILLFLIQNEGRGISAEQLYEAV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + L A V + +S+LR+KL G+ + S R GY + Sbjct: 186 WKL-PAAGNAGAVRTAVSRLRRKLAGS-GYT-ITSGRGSGYCFE 226 >gi|300816027|ref|ZP_07096250.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300531234|gb|EFK52296.1| response regulator receiver domain protein [Escherichia coli MS 107-1] Length = 229 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 105/224 (46%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ V + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQLVPDVIILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ ++ Sbjct: 125 FSSPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|317131583|ref|YP_004090897.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469562|gb|ADU26166.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 249 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 14/149 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE R IR + P++ +S + G DD V+KP E++ARV A RR Sbjct: 85 LETLRHIRERTDAPVLILSARGREIDKVIGLRVGADDYVSKPFSVDELMARVGAHLRR-- 142 Query: 121 VSNNRAETGPIRVFSDGR-DP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N ++ P+ + DP EV G+ L +E +IL YL+ N G+ V++ QI+ Sbjct: 143 -ENKHRQSAPVTGIGALKLDPSSWTVEVDGKPVELSGKEFQILSYLLINAGQTVSREQIY 201 Query: 175 SAIYGLFDEAV--EENVVESHISKLRKKL 201 +A++ +A + + V HI LR KL Sbjct: 202 AAVW---KDAFGGDLSTVTVHIKNLRDKL 227 >gi|160933134|ref|ZP_02080523.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753] gi|156868208|gb|EDO61580.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753] Length = 233 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 65/121 (53%), Gaps = 13/121 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--------TGPIRVFSDGRDPEVQGE 145 G DD V KP E++ARV ++YRR+ ++ R E +G + R + +G Sbjct: 97 GADDYVTKPFSPSELVARVDSLYRRVAIAEMREENNFQEELVSGDFVLNLRNRALKKKGR 156 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV--EENVVESHISKLRKKLRN 203 + L + E +I+EY +N G + +T I + ++G EA EE +V+ +I +LR K+ + Sbjct: 157 MIELTQVEFQIMEYFFSNPGVALDRTNILTHVWG---EAYYGEEKIVDVNIRRLRMKIED 213 Query: 204 K 204 + Sbjct: 214 E 214 >gi|126700939|ref|YP_001089836.1| two-component response regulator [Clostridium difficile 630] gi|254976918|ref|ZP_05273390.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255094303|ref|ZP_05323781.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255102486|ref|ZP_05331463.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255308391|ref|ZP_05352562.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|255316058|ref|ZP_05357641.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518715|ref|ZP_05386391.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255651836|ref|ZP_05398738.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260684864|ref|YP_003216149.1| two-component response regulator [Clostridium difficile CD196] gi|260688522|ref|YP_003219656.1| two-component response regulator [Clostridium difficile R20291] gi|306521624|ref|ZP_07407971.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|115252376|emb|CAJ70217.1| Two-component response regulator [Clostridium difficile] gi|260211027|emb|CBA66352.1| two-component response regulator [Clostridium difficile CD196] gi|260214539|emb|CBE07065.1| two-component response regulator [Clostridium difficile R20291] Length = 219 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 2/143 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 E+ + IR P++ ++ + G DD + KP E+ AR+ A RR Sbjct: 60 FEVCKTIRNKVDCPILFLTAKNMESDIMYGLGIGADDYITKPFGVGELRARITAHLRRES 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N ++ G++ + G+ + E I E+L N+G+ +K +I+ ++YG Sbjct: 120 REKKNLLTISNVQFNFLGKEVSIDGKKINFTKSEYLICEFLAKNKGQVFSKERIYESVYG 179 Query: 180 LFDEAVEENVVESHISKLRKKLR 202 FD + + + HI +R KL+ Sbjct: 180 -FDGESDISTITEHIKNIRSKLK 201 >gi|320546932|ref|ZP_08041234.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] gi|320448450|gb|EFW89191.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] Length = 226 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/144 (25%), Positives = 73/144 (50%), Gaps = 5/144 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + I ++ +Q +I ++ + + D+G DD + KP +E+LAR+ ++ RR+ Sbjct: 63 VQEISQSGNQAHIIMLTAMSEIDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRRVDTA 122 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++N + G + G L +E ++LE+ M N GK+++ QIF+ ++ Sbjct: 123 FTSNILKLGS-ATLNVGEQELASQNTIQLAGKEAKMLEFFMLNPGKKLSTDQIFNHVWAT 181 Query: 181 --FDEAVEENVVESHISKLRKKLR 202 D ++ V ++S LR+KL+ Sbjct: 182 DKDDPDIDNGYVFIYVSYLRQKLQ 205 >gi|319786103|ref|YP_004145578.1| two component transcriptional regulator, winged helix family [Pseudoxanthomonas suwonensis 11-1] gi|317464615|gb|ADV26347.1| two component transcriptional regulator, winged helix family [Pseudoxanthomonas suwonensis 11-1] Length = 227 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 16/210 (7%) Query: 14 GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR--AHS 71 G+ F DGV+ L + D AI L G +E+ R +R A Sbjct: 24 GHTVDFAADGVT-----------GLHLAVVHDFDAIVLDLNLPGMDGIEVCRKLRNEARK 72 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130 Q P++ ++ SL+ L FDSG DD + KP +E+ R+ A+ RR K R TG Sbjct: 73 QTPVLMLTARDSLENKLAGFDSGADDYLIKPFALQEVEVRLNALARRGKGVQTRVLNTGD 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + D + +G + L +IL+ LM V + ++ + ++G +E + + + Sbjct: 133 LEYNLDTLEVRREGRLLQLNPTALKILQALMEASPAVVTRQELETRVWG--EELPDSDSL 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 HI LR + + ++ +GY I Sbjct: 191 RVHIHGLRAVVDKPFATPYIQTRHGIGYRI 220 >gi|317495907|ref|ZP_07954270.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316914084|gb|EFV35567.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 223 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 3/159 (1%) Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-L 119 EL + +R + P+I ++ SL + DSG DD + KP E+LAR+ + RR Sbjct: 61 ELIKQLRVKGNSTPVIMLTAKDSLDDKILGLDSGADDYIVKPFEFDELLARIRVLMRRNY 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N + + + + E L +E +LEYL N+ +++ QI + ++ Sbjct: 121 GFATNIIQVDDVVLDISKKQVTRSSESIVLTGKEYEVLEYLFKNKTGIISREQILNHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E V N+++ + +RKKL + +KR LGY Sbjct: 181 YDYEGV-SNIIDVIVKNIRKKLDVGSKKPIIHTKRGLGY 218 >gi|303250662|ref|ZP_07336859.1| phosphate regulon transcriptional regulatory protein PhoB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307246173|ref|ZP_07528255.1| Phosphate regulon transcriptional regulatory protein phoB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307252889|ref|ZP_07534778.1| Phosphate regulon transcriptional regulatory protein phoB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255154|ref|ZP_07536972.1| Phosphate regulon transcriptional regulatory protein phoB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257309|ref|ZP_07539079.1| Phosphate regulon transcriptional regulatory protein phoB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259591|ref|ZP_07541316.1| Phosphate regulon transcriptional regulatory protein phoB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|302650650|gb|EFL80809.1| phosphate regulon transcriptional regulatory protein PhoB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306853108|gb|EFM85331.1| Phosphate regulon transcriptional regulatory protein phoB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306859678|gb|EFM91702.1| Phosphate regulon transcriptional regulatory protein phoB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862027|gb|EFM94003.1| Phosphate regulon transcriptional regulatory protein phoB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864159|gb|EFM96072.1| Phosphate regulon transcriptional regulatory protein phoB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866527|gb|EFM98390.1| Phosphate regulon transcriptional regulatory protein phoB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 213 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 3/149 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 +Q+P++ ++ S + ++G DD V KP + ++AR+ ++ RR +N+ Sbjct: 58 AQIPILMLTARSSEDDCIVCLNTGADDYVTKPFSPKVLIARIESLLRRTYQNNDIINIDD 117 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + Q + L E ++L + M + K ++ Q+ ++G D VE+ V Sbjct: 118 LILDQNAKRVTFQKKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWG-NDIYVEDRTV 176 Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +S+I +LRK L GF+ V + R GY Sbjct: 177 DSYIRRLRKSL-EPCGFERYVQTVRGSGY 204 >gi|229105451|ref|ZP_04236094.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228678007|gb|EEL32241.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 229 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 8/150 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S+VP+I ++ TL F+ G DD V KP +LAR + K S Sbjct: 66 RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKASKK 125 Query: 125 RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E I V R V L E IL Y M N+G + + Q+ S I Sbjct: 126 PLENEDDTLSIHGIHVHFPSRTVTVDEVDVSLTHTEFEILVYFMKNQGIVLTREQLISRI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207 +G ++ A ++ V SHI LR KL K + Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|169627776|ref|YP_001701425.1| putative DNA-binding response regulator PhoP [Mycobacterium abscessus ATCC 19977] gi|169239743|emb|CAM60771.1| Putative DNA-binding response regulator PhoP [Mycobacterium abscessus] Length = 247 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 11/173 (6%) Query: 38 LQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGV 95 L + R D ++ + G G VL R +RA P + ++ LQ + G Sbjct: 59 LARTVRPDAVILDVMMPGMDGFGVL---RRLRADGIDAPTLFLTARDGLQDKIAGLTLGA 115 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSN-----NRAETGPIRVFSDGRDPEVQGEVFPLP 150 DD V KP E++AR+ I RR + + +R I + D + GE L Sbjct: 116 DDYVTKPFSLEEVVARLRVILRRSGMGSEPARKSRLSFADIELDEDTHEVWKAGEPVALS 175 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 E +L Y M N G ++K +I ++ +D + NVVES++S LR+K+ N Sbjct: 176 PTEFTLLRYFMINAGTVLSKPKILDHVW-RYDFGGDVNVVESYVSYLRRKIDN 227 >gi|161503820|ref|YP_001570932.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865167|gb|ABX21790.1| hypothetical protein SARI_01907 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 226 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 14/214 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + L + GY+ + DG + L + RE S I ++ G ++ R + Sbjct: 18 QGLTEAGYVVDYACDG-----------RDGLHLALREHYSLIILDIMLPGLDGWQVLRAL 66 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ R Sbjct: 67 RTAHQTPVIYLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVSVFTRLS 126 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 + + + + + L R+E +L L + G+ V +T I S ++G+ FD E Sbjct: 127 INGLDMDATRQSVSRNKKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 184 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N V+ I +LR K+ + + + R +GY + Sbjct: 185 TNTVDVAIRRLRAKVDDPFEKKLITTVRGMGYRL 218 >gi|114567685|ref|YP_754839.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338620|gb|ABI69468.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 223 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 81/164 (49%), Gaps = 4/164 (2%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R + P++ ++ L+ + DSG DD + KP E+LAR+ A+ RR Sbjct: 60 LEILRQLRLNGISSPVMLLTAKGELEDKVSGLDSGADDYLVKPFAAEELLARIRALSRRK 119 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++ + + + E + L R+E I+ Y + + ++K ++ + Sbjct: 120 GEMIVDDTLDIADFTLNLSTYELEGKNSSVRLTRKEFDIMRYFVYRPNRVLSKDELIEKV 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G FD + N +E +IS LRKKL + + + R +GY ++ Sbjct: 180 WG-FDSEADYNNIEVYISFLRKKLAHIGSQAAISTLRGIGYKLE 222 >gi|42519461|ref|NP_965391.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] gi|41583749|gb|AAS09357.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] gi|329667017|gb|AEB92965.1| two-component system response regulator [Lactobacillus johnsonii DPC 6026] Length = 221 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 3/114 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 DSG DD + KP +E+LAR+ + RR + + N E G + + V L Sbjct: 91 LDSGADDYLTKPFSLKELLARLRSKERRDDQYTPNEVEVGDL-ALNVAEQELVSHNSIRL 149 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 +E ++L YLM N GK + + + + ++ DE E+VV +IS LR+KL++ Sbjct: 150 GSKETQLLNYLMLNEGKEFSTSDLLAHVWK-DDEEASEDVVWIYISYLRQKLQS 202 >gi|150391654|ref|YP_001321703.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149951516|gb|ABR50044.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 227 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 21/221 (9%) Query: 16 IALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAI-EAFLIGKGEKVL---ELP------ 64 I + DD + LE +W + S D S I EAF+ V+ +LP Sbjct: 5 IFIIEDDSLLLEALKE-GLSQWSYEVSNPSDFSHIMEAFVEHHPHLVIIDIQLPKFDGFH 63 Query: 65 --RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 R IRA S+VP+I +S + + G DD V KP + +LA+V AI RR Sbjct: 64 WCRAIRAVSKVPIIFLSSRDHPMDMVMAMNLGADDYVQKPFNMDVLLAKVQAILRRTYTY 123 Query: 120 -KVSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +VS++ E + GR + G+ L + E IL L+ + K +++ ++ + Sbjct: 124 EEVSSDVIEWNQALIDLKSGRIYK-DGKTIDLTKNEFFILSVLVKSNNKIISRHELMKML 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + D+ + +N + ++I++LR++L + + + +K+ LGY Sbjct: 183 WD-DDQYINDNTLTANITRLRQQLSSLNLAEGIVTKKGLGY 222 >gi|332358234|gb|EGJ36062.1| DNA-binding response regulator [Streptococcus sanguinis SK355] Length = 234 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD + KP +E+LAR+ ++ RR+ + N + G + G + L Sbjct: 92 LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202 +E R++E+LM N K ++ +IF ++ DE ++E V +IS LR+KL+ Sbjct: 151 AGKESRMMEFLMLNAQKSLSTQEIFRHVWSKDEDEDLDEGFVWIYISYLRQKLK 204 >gi|329924862|ref|ZP_08279811.1| subtilin biosynthesis regulatory protein SpaR [Paenibacillus sp. HGF5] gi|328940359|gb|EGG36686.1| subtilin biosynthesis regulatory protein SpaR [Paenibacillus sp. HGF5] Length = 224 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 4/164 (2%) Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E LE+ IR P++ ++ + F +G DD + KP RE+ ARV A R Sbjct: 57 ENGLEICERIRGFVSCPILFLTARIEDADKIAGFRAGGDDYILKPFSIRELGARVEAHLR 116 Query: 118 RLKVSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R + +A + + R+ Q PL ++E I+E L N G K +++ Sbjct: 117 REQRILTKASVRFNHDLVINYTARELYFQDIRIPLAKKEFDIIELLSMNPGMVFEKERMY 176 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I+GL DE + +V+ HI ++R K + D +++ +GY Sbjct: 177 EKIWGL-DEEGDSSVIAEHIRRIRNKFKEYGSTDRIETVWGVGY 219 >gi|213024545|ref|ZP_03338992.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 210 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 6/147 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L R IR S +P++ ++ L + G DD + KP RE++ARV I RR K Sbjct: 40 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 99 Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + AE+ P+ + G+ L E R+L+ L GK ++ Q+ + Sbjct: 100 PQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNH 158 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203 +Y + V + ++SHI LR+KL + Sbjct: 159 LYDDY-RVVTDRTIDSHIKNLRRKLES 184 >gi|163790188|ref|ZP_02184621.1| DNA-binding response regulator [Carnobacterium sp. AT7] gi|159874463|gb|EDP68534.1| DNA-binding response regulator [Carnobacterium sp. AT7] Length = 230 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 16/161 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ R IR S VP+I ++ S+ + D G DD + KP E+LAR+ A++RR++ Sbjct: 63 IDVCRRIRQVSNVPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALFRRIE 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQG---------EVFPLPRRERRILEYLMANRGKRVAKT 171 + + + T V RD V+ EV L +RE +L LM N +A+ Sbjct: 123 IESEQNITKQTTVTY--RDLTVEKENRVVRRGEEVIELTKREYELLLELMENVNVVLARD 180 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 + + ++G ++ VE NVV+ +I + LRNK+ VDS Sbjct: 181 VLLNKVWG-YETEVETNVVDVYI----RYLRNKIDVPNVDS 216 >gi|153812114|ref|ZP_01964782.1| hypothetical protein RUMOBE_02510 [Ruminococcus obeum ATCC 29174] gi|149831769|gb|EDM86855.1| hypothetical protein RUMOBE_02510 [Ruminococcus obeum ATCC 29174] Length = 219 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 3/126 (2%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRR 152 G DD + KP E+ ARV A RR + + A T I++ ++ V L + Sbjct: 93 GADDYLTKPFRIAELRARVNAHLRRERRERHTALTFDRIKIDLSEKELRVDNTPVALTKS 152 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E I EYL N+G+ +K QI+ A++ L ++ + + + +HI +R KL NKL P+ + Sbjct: 153 EYLICEYLARNKGQVFSKEQIYEAVFSLEGDS-DNSTISTHIKNIRSKL-NKLDIQPIAT 210 Query: 213 KRFLGY 218 +GY Sbjct: 211 VWGIGY 216 >gi|153956233|ref|YP_001396998.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219856556|ref|YP_002473678.1| hypothetical protein CKR_3213 [Clostridium kluyveri NBRC 12016] gi|146349091|gb|EDK35627.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219570280|dbj|BAH08264.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 230 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 5/146 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ ++IR S P+I I+ + +SG DD + KP E++AR+ A++RR+ Sbjct: 62 MEVCKLIRLKSNTPIIMITARSEDSDKIWGLNSGADDYIVKPFSPGEVVARIKAVFRRIT 121 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + + + D ++ G L ++E +L L K V++ + Sbjct: 122 AHKNNEPSIIKYQHLELDIDNYSVKLDGVSVNLTKKEIEVLWVLSTYPNKIVSRDTLLDE 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR 202 I+G+ D + V++HI ++R KL+ Sbjct: 182 IWGI-DYFGDPRTVDTHIKRIRAKLQ 206 >gi|126665087|ref|ZP_01736070.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Marinobacter sp. ELB17] gi|126630457|gb|EBA01072.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Marinobacter sp. ELB17] Length = 243 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 87/176 (49%), Gaps = 18/176 (10%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE L + R +R P++ ++ + + G DD + KP+ R +LAR+ Sbjct: 59 LMLPGEDGLSICRRVRPRYSGPILMLTARTDDMDQILGLEMGADDYIGKPVQPRVLLARI 118 Query: 113 AAIYRRLK------VSNNRAETGPIRV-FSD------GRDPEVQGEVFPLPRRERRILEY 159 A+ RR+ V ++ GP+RV F++ R+ + G L E +L Sbjct: 119 RALMRRVAEKNQPLVGSDPVSEGPVRVKFNELVIDRSMREAWLSGVTVDLTSAEFDLLWL 178 Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 L +N G+ +++ +IF+A+ G+ + ++ ++ +S++R K+G DP+ +R Sbjct: 179 LASNAGRVLSREEIFTALRGIEYDG-QDRSIDVRVSRIRP----KIGDDPIHPRRI 229 >gi|73543119|ref|YP_297639.1| two component transcriptional regulator [Ralstonia eutropha JMP134] gi|72120532|gb|AAZ62795.1| two component transcriptional regulator, winged helix family [Ralstonia eutropha JMP134] Length = 225 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 55/197 (27%), Positives = 95/197 (48%), Gaps = 16/197 (8%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66 RAL + G++ DG+ E L EE+ DV ++ L GK G VL + Sbjct: 18 RALEQGGFVIEHVGDGLQAEA--RLVAEEY-------DVVVLDLRLPGKDGLAVL---KA 65 Query: 67 IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNN 124 +RA + P++ ++ +L + + G DD + KP E+ AR+ A+ RR + ++ Sbjct: 66 MRARDDRTPVLILTAQDTLDERVRGLNLGADDYLPKPFAIAELEARILALIRRSRGRAHP 125 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 R + G + + R + G+ L RE +L L+A G+ + K Q+ ++ L D Sbjct: 126 RLQCGTLVFDGESRGFTLDGQPLALTPRESTLLGALLARSGQPLTKAQLLDKVFSL-DAD 184 Query: 185 VEENVVESHISKLRKKL 201 V + +E + +LRKKL Sbjct: 185 VSPDAIEVLVYRLRKKL 201 >gi|332532103|ref|ZP_08407986.1| transcriptional regulatory protein in two-component regulatory system with BaeS [Pseudoalteromonas haloplanktis ANT/505] gi|332038444|gb|EGI74888.1| transcriptional regulatory protein in two-component regulatory system with BaeS [Pseudoalteromonas haloplanktis ANT/505] Length = 226 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 4/146 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ +EL + IR S VP+I +S L + G DD + KP + E++ARV AI Sbjct: 60 GQSGIELCKAIRRFSNVPIIMVSAKVEEIDRLLGLELGADDYICKPFSYAELVARVKAIL 119 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RRL +++ E+ +++ + + L E ++ + L N + ++ + Sbjct: 120 RRLNNASDVTEST-MKLDESSYSVKYKSNSIELTNFEFQLFKPLFNNPNRIYSRDSLMDT 178 Query: 177 IYGLFDE-AVEENVVESHISKLRKKL 201 +Y D+ V ++SHI KLRKKL Sbjct: 179 MYA--DQRIVSHRTIDSHIKKLRKKL 202 >gi|303252114|ref|ZP_07338283.1| phosphate regulon transcriptional regulatory protein PhoB [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248279|ref|ZP_07530305.1| Phosphate regulon transcriptional regulatory protein phoB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649096|gb|EFL79283.1| phosphate regulon transcriptional regulatory protein PhoB [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855213|gb|EFM87390.1| Phosphate regulon transcriptional regulatory protein phoB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 213 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 3/149 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 +Q+P++ ++ S + ++G DD V KP + ++AR+ ++ RR +N+ Sbjct: 58 AQIPILMLTARSSEDDCIVCLNTGADDYVTKPFSPKVLIARIESLLRRTYQNNDIINIDD 117 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + Q + L E ++L + M + K ++ Q+ ++G D VE+ V Sbjct: 118 LILDQNAKRVTFQKKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWG-NDIYVEDRTV 176 Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +S+I +LRK L GF+ V + R GY Sbjct: 177 DSYIRRLRKSLE-PCGFERYVQTVRGSGY 204 >gi|295106296|emb|CBL03839.1| two component transcriptional regulator, winged helix family [Gordonibacter pamelaeae 7-10-1-b] Length = 230 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 14/154 (9%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNR 125 ++P++ +S + F +G DD V KP E+L R+ A RR K + NR Sbjct: 69 RIPIVFLSAKGDIVDKSIGFKAGGDDYVVKPFSPDELLLRIEAHLRRHKDDLAFAKAVNR 128 Query: 126 ---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + TG + VF + + + G L +E IL L AN G+ + QIF+ I+G Sbjct: 129 EGSSTTGDLEVFFNQYEARLHGRKVDLTAKEFEILALLAANPGQVFTRQQIFAHIWG--- 185 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + V ES I+ +K+R K+ +P K L Sbjct: 186 --EDSEVDESSITVFMRKIREKIEENPSQPKYLL 217 >gi|258622113|ref|ZP_05717139.1| DNA-binding response regulator [Vibrio mimicus VM573] gi|258624051|ref|ZP_05719003.1| DNA-binding response regulator [Vibrio mimicus VM603] gi|258583661|gb|EEW08458.1| DNA-binding response regulator [Vibrio mimicus VM603] gi|258585437|gb|EEW10160.1| DNA-binding response regulator [Vibrio mimicus VM573] Length = 236 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I RA +P++ ++ + + D G D+ + KP E+LAR+ I RR S Sbjct: 81 LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 137 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE G + + ++ + L R E +IL LM G+ ++K + A++ Sbjct: 138 SGSAEELISVGELNLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 197 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +DE +N +E HI LRKKL + L + + R +GY I+ Sbjct: 198 G-WDEGSSDNAIEVHIHNLRKKLPDNL----IKNVRGVGYMIE 235 >gi|237798943|ref|ZP_04587404.1| DNA-binding response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021797|gb|EGI01854.1| DNA-binding response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 151 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 70/128 (54%), Gaps = 11/128 (8%) Query: 92 DSGVDDVVNKPIHHREILARVAAIYRRLKVSN------NRAETGPIRVFSDGRDPEVQGE 145 D+G DD V KP+H R +LAR+ A+ RR + R GP+ V + R+ ++ + Sbjct: 2 DTGADDFVCKPVHPRVLLARIHALLRRSEAPQVPAAELRRLVFGPLVVDNALREAWLREQ 61 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 L E +L L+AN G+ +++ +IF+A+ G+ + ++ ++ IS++R K+ Sbjct: 62 SIELTGAEFDLLWLLVANAGRTLSREEIFTALRGVGYDG-QDRSIDVRISRIRP----KI 116 Query: 206 GFDPVDSK 213 G DP+ + Sbjct: 117 GDDPIHPR 124 >gi|228963749|ref|ZP_04124890.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228795894|gb|EEM43361.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 242 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 8/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 79 ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNE 138 Query: 122 SNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G V+ + + V E L E +L + + +++ Q+ I+GL Sbjct: 139 HKQIQYHGI--VWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL 196 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 + E+ V+SHI LR KLR K F P+D K G W Sbjct: 197 -NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 237 >gi|254387470|ref|ZP_05002709.1| response regulator [Streptomyces clavuligerus ATCC 27064] gi|294815144|ref|ZP_06773787.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326443505|ref|ZP_08218239.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197701196|gb|EDY47008.1| response regulator [Streptomyces clavuligerus ATCC 27064] gi|294327743|gb|EFG09386.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 221 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 93/220 (42%), Gaps = 27/220 (12%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66 R L +GY DG LEG + + S D+ ++ L G G +V R Sbjct: 18 RGLTAEGYAVDVVHDG--LEGLH-------MASEGVHDLVILDIMLPGMNGYRVCAALRA 68 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 A +P++ ++ + D+G DD + KP + ++ARV A+ RR RA Sbjct: 69 --AGHDMPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR----RGRA 122 Query: 127 ETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 P+ D R VF L +E +LE L G V+K QI ++ Sbjct: 123 GGSPVLAVGDLRVDTAARRVFVGETETTLTAKEFAVLEQLAVRAGDVVSKAQILEHVWD- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F + N++E +IS LR+ KLG + + R GY + Sbjct: 182 FAYDGDPNIIEVYISSLRR----KLGAPRIQTVRGAGYRL 217 >gi|307326237|ref|ZP_07605434.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306888180|gb|EFN19169.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 226 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 13/206 (6%) Query: 23 GVSLEGFNSLEFEE------WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPL 75 G++ EG+ S++ W+ + + ++ L G G KV R R + P+ Sbjct: 19 GLTAEGY-SVDLAHDGRHGLWMARTGEYALVVLDLMLPGLNGYKVCAQLR--REGNATPI 75 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVF 134 + ++ + D+G DD + KP + ++AR+ A+ RR V+ G + + Sbjct: 76 LVLTAKDGDWDQAEALDTGADDYLAKPFSYVVLVARLRALVRRAATVAPPVLAVGDLSLD 135 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 GR G L RE +LE L G+ V+KT + + DEA + N+VE+ + Sbjct: 136 VAGRVCRRAGARVELTPREFAVLELLARRAGQAVSKTDLL--YHAWPDEAQDPNLVEARV 193 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSI 220 S LRKK+ + + R GY + Sbjct: 194 SALRKKVDTAFHRQSLQTVRGTGYRL 219 >gi|260431422|ref|ZP_05785393.1| DNA-binding response regulator [Silicibacter lacuscaerulensis ITI-1157] gi|260415250|gb|EEX08509.1| DNA-binding response regulator [Silicibacter lacuscaerulensis ITI-1157] Length = 225 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 2/160 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ + ++ P+I + +L L +SG DD V KP E+LAR+ A+ RR + Sbjct: 63 LHQLKQIRNETPIIICTARDALDERLRGLNSGSDDYVVKPFAFAELLARIRAVLRRPGNA 122 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +G +R + R + G RE +LE + G+ +K I +A+YG F Sbjct: 123 LGMVLGSGNVRFDTVDRSVTIGGRPARFSARELALLELFLTRAGRVQSKAAIENALYG-F 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D N +E +LRKKL + + R +GY ++ Sbjct: 182 DAPPTPNAIEVLTHRLRKKLTEYEADVTIHNLRGVGYLLE 221 >gi|196250488|ref|ZP_03149179.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|196209978|gb|EDY04746.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 220 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 9/142 (6%) Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV 142 ++Q + ++G DD + KP E++AR+ A+ RR V + ET F+ R Sbjct: 84 AVQDRVTGLEAGADDYLVKPFEIDELVARLKALARRTFVP-LQEETVTFHGFTLNRTSHT 142 Query: 143 ---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 E L RE ++L+ L+ N+G+ V + I ++G +D V +++ I LRK Sbjct: 143 LHRNNEEISLTPREFQLLDLLVQNQGQVVPRETILDRVWG-WDADVSMKTIDATIKLLRK 201 Query: 200 KLRNKLGFDPVDSKRFLGYSID 221 KL++ D + + R +GY ID Sbjct: 202 KLKD----DVIQTVRGVGYKID 219 >gi|188588892|ref|YP_001920540.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] gi|251779766|ref|ZP_04822686.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499173|gb|ACD52309.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] gi|243084081|gb|EES49971.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 234 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 5/112 (4%) Query: 94 GVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 G DD + KP RE+LARV A+ RR + + N E+ +++ D + + + L Sbjct: 99 GADDYITKPFSVRELLARVKAVLRRTYPGVDIEENSYESQGLKIDFDRHEVFINNQKIEL 158 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +E +L+ L+ N+GK + + + I+G ++ E V+ HI LRKK+ Sbjct: 159 TLKEFDLLKILIKNKGKILQRETLLDKIWG-YEYIGETRTVDVHIRYLRKKI 209 >gi|167769639|ref|ZP_02441692.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM 17241] gi|167668000|gb|EDS12130.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM 17241] Length = 230 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 75/144 (52%), Gaps = 13/144 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + +P++ + + + +G DD + KP E++AR+A++ RR N++A Sbjct: 67 IRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNHQA 126 Query: 127 ------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179 + +++ + R + F LP +E +L Y ++GK + K QI+ ++G Sbjct: 127 GAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVWGE 186 Query: 180 --LFDEAVEENVVESHISKLRKKL 201 +D++ N++ + IS+LRKKL Sbjct: 187 EYFYDDS---NIM-AIISRLRKKL 206 >gi|149918888|ref|ZP_01907374.1| two component transcriptional regulator, winged helix family protein [Plesiocystis pacifica SIR-1] gi|149820262|gb|EDM79679.1| two component transcriptional regulator, winged helix family protein [Plesiocystis pacifica SIR-1] Length = 239 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 77/153 (50%), Gaps = 14/153 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LEL R +R S+VP+I +S + + G DD + KP RE+LAR+ A+ RR Sbjct: 63 LELCRKLRQRSKVPVIILSARGDEVDRIVGLEVGADDYMPKPFSPRELLARIRAVLRRHS 122 Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFS 175 + E TGP+ + R + G L + +L +L+A + +RV ++ Q+ + Sbjct: 123 AAQGDDEDSVTTGPLEIDRARRTATIAGASCELTAYQFDLL-WLLATQAERVLSRNQLHA 181 Query: 176 AIYGL-------FDEAVEENVVESHISKLRKKL 201 + L FD V+ + ++ H+SK+R+ L Sbjct: 182 QVRALRGEPAMDFDPTVDRS-IDVHLSKIRQAL 213 >gi|221065616|ref|ZP_03541721.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220710639|gb|EED66007.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 231 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 3/161 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ R P+I ++ LQ + D+G DD + KP E+ AR+ A+ RR S Sbjct: 63 LRRLRRQGVAAPVIILTARYDLQDRISGLDAGGDDYLPKPFALGELEARIRALLRRGSSS 122 Query: 123 NNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + D R V L RE +LE L+ +G+ ++K QI ++Y Sbjct: 123 GASLTLGFGDLMLDPAARIATVHDHELMLTAREMAVLELLLRRQGRIISKQQIIESLY-T 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + +E +S+LR+KL + + R LGY ++ Sbjct: 182 WASDINPSSIEVFVSRLRRKLEDAGAGVGIRMLRGLGYRLE 222 >gi|328956993|ref|YP_004374379.1| two-component response regulator [Carnobacterium sp. 17-4] gi|328673317|gb|AEB29363.1| two-component response regulator [Carnobacterium sp. 17-4] Length = 230 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 16/161 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ R IR S VP+I ++ S+ + D G DD + KP E+LAR+ A++RR++ Sbjct: 63 IDVCRRIRQVSNVPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRALFRRIE 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQG---------EVFPLPRRERRILEYLMANRGKRVAKT 171 + + + T V RD V+ EV L +RE +L LM N +A+ Sbjct: 123 IESEQNITKQTTVTY--RDLTVEKENRVVRRGDEVIELTKREYELLLELMENVNVVLARD 180 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 + + ++G ++ VE NVV+ +I + LRNK+ VDS Sbjct: 181 VLLNKVWG-YETEVETNVVDVYI----RYLRNKIDVPNVDS 216 >gi|323141127|ref|ZP_08076030.1| putative transcriptional regulatory protein QseB [Phascolarctobacterium sp. YIT 12067] gi|322414393|gb|EFY05209.1| putative transcriptional regulatory protein QseB [Phascolarctobacterium sp. YIT 12067] Length = 237 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 81/163 (49%), Gaps = 3/163 (1%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+L + +R Q ++ ++ +L + +SG DD + KP E++AR+ A+ RR Sbjct: 76 LDLCKRLREEDYQGKILLLTAKDTLADKVQGLNSGADDYLVKPFELEELVARLNALCRRQ 135 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + S + G + S L RE ++LE L+ NRG+ + + + I+ Sbjct: 136 GQYSAEKLRYGAYTLESSTYCLAYGERRVELRPREFKLLELLLRNRGQVMPRAVLQDRIW 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G+ D V EN ++ HI LRKK+ G + + + R +GY ++ Sbjct: 196 GI-DSDVTENNLDVHIRLLRKKIMELNGEELIKTMRGVGYYVE 237 >gi|302553204|ref|ZP_07305546.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302470822|gb|EFL33915.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 233 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 31/226 (13%) Query: 9 ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 AL +DG++ DG+S LE F + R D++ ++ + G + L R I Sbjct: 23 ALERDGFVVTAMPDGLSGLEAFRA----------DRPDIALLDVMV--PGLDGVSLCRRI 70 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126 R S VP+I +S + ++G DD V KP ++AR+ A+ RR RA Sbjct: 71 RDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHAGGGRA 130 Query: 127 ET------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E G + V ++G + G L E R+L + G +++ ++ Sbjct: 131 EEPASPADGGVLTFGDLEVDTEGMEVRRAGRPVALTPTEMRLLLEFSSAPGTVLSRDKLL 190 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + + VV+ H+ ++LR K+G D +++ R GY + Sbjct: 191 ERVWD-YGWGGDTRVVDVHV----QRLRQKIGQDRIETVRGFGYKL 231 >gi|209546451|ref|YP_002278369.1| two component winged helix family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537695|gb|ACI57629.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 228 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 15/170 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR SQVP++ ++ + + G DD V KP E+ AR+ AI RR Sbjct: 61 IEVLQRIRKLSQVPVLMLTARGDDVDRISGLNLGADDYVPKPCSPGELAARLRAILRRAG 120 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS + G + + S R E +GE L E +LE L + G+ V+K I Sbjct: 121 QPAAGVSTDTIRAGQLVIHSGSRSAEWRGETLELTGTEFSLLEVLARSAGQLVSKQDISK 180 Query: 176 AIYGL----FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G FD ++ HIS +R+KL + G + S R GY + Sbjct: 181 RAFGKPLTPFDRR-----IDVHISSVRQKLGLREDGQSWIQSVRGQGYQL 225 >gi|169828325|ref|YP_001698483.1| regulatory protein [Lysinibacillus sphaericus C3-41] gi|168992813|gb|ACA40353.1| Regulatory protein [Lysinibacillus sphaericus C3-41] Length = 218 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/168 (25%), Positives = 78/168 (46%), Gaps = 7/168 (4%) Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 K K E+ ++ R+ +P+I ++ + FD G++D + KP ++ RV A+ Sbjct: 55 KMPKRYEVVKMFRSQFNIPIIFLTALEEELGKIKGFDPGINDYITKPFPFHVLIRRVQAV 114 Query: 116 YRRLKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR +N N ++V V E L +E +IL+ L+ N K + + I Sbjct: 115 LRRSNNTNLENYLYFNQLQVDCKRIKVYVNKEEIQLTTKEFKILQLLLRNEKKVLTRNTI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ ++ + E +++HI +RK KL + + R +GY ID Sbjct: 175 IQKVWD-YEYSGETRKIDAHIKNIRK----KLNIPYIKTVRGIGYKID 217 >gi|218895705|ref|YP_002444116.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228899336|ref|ZP_04063599.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|218542826|gb|ACK95220.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228860367|gb|EEN04764.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 225 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 8/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNE 121 Query: 122 SNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G V+ + + V E L E +L + + +++ Q+ I+GL Sbjct: 122 HKQIQYHGI--VWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 + E+ V+SHI LR KLR K F P+D K G W Sbjct: 180 -NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 220 >gi|17158720|ref|NP_478231.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134669|dbj|BAB77227.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 231 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 82/170 (48%), Gaps = 12/170 (7%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LEL + +R S +P++ ++ ++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 62 LELCKRLRYRQSPLPVLMLTAKDRMEDKVTGLDAGADDYLVKPFGMAELLARLRALQRRS 121 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L V N + G V S + Q L +E ++LEY M + + V Sbjct: 122 PQFQPQELTVGNLTLDYGNNMVVSQNNTGKKQE--ISLTNKEFQLLEYFMKHPNQIVTTE 179 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 QI + ++ + E + NVV + + LR+KL N + +++ GY ++ Sbjct: 180 QIRNQLWEVSAEPI-SNVVAAQMRLLRRKLTNSGCGNMIETLHGTGYRLN 228 >gi|15597719|ref|NP_251213.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107101969|ref|ZP_01365887.1| hypothetical protein PaerPA_01003016 [Pseudomonas aeruginosa PACS2] gi|116050466|ref|YP_790715.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|152984654|ref|YP_001348074.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|218891499|ref|YP_002440366.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254235520|ref|ZP_04928843.1| hypothetical protein PACG_01439 [Pseudomonas aeruginosa C3719] gi|254240954|ref|ZP_04934276.1| hypothetical protein PA2G_01634 [Pseudomonas aeruginosa 2192] gi|296389055|ref|ZP_06878530.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313107420|ref|ZP_07793610.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|9948578|gb|AAG05911.1|AE004679_5 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|5921515|emb|CAB56468.1| czrR protein [Pseudomonas aeruginosa] gi|115585687|gb|ABJ11702.1| putative DNA-binding heavy metal response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126167451|gb|EAZ52962.1| hypothetical protein PACG_01439 [Pseudomonas aeruginosa C3719] gi|126194332|gb|EAZ58395.1| hypothetical protein PA2G_01634 [Pseudomonas aeruginosa 2192] gi|150959812|gb|ABR81837.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] gi|218771725|emb|CAW27499.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] gi|261411913|gb|ACX81358.1| CzcR [Pseudomonas aeruginosa] gi|310880112|gb|EFQ38706.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 224 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 21/171 (12%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 +L R +R S ++ ++ + L + D G DD + KP E+LARV ++ RR Sbjct: 61 DLLRRLRERSSARVMMLTGHGRLTDKVRGLDLGADDFMVKPFQFPELLARVRSLLRRHDQ 120 Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKT 171 L+V++ + R F +G V L +E +L LM G + +T Sbjct: 121 APMQDVLRVADLELDASRHRAF--------RGRVRINLTTKEFALLHLLMRRNGDVITRT 172 Query: 172 QIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 QI S I+ + FD + NVVE I +LR K+ + + + R +GY ++ Sbjct: 173 QIISLIWDMNFDN--DSNVVEVAICRLRAKIDDGFDLKLIHTIRGVGYVLE 221 >gi|296448436|ref|ZP_06890320.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296254060|gb|EFH01203.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 230 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 6/153 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAET 128 + P + +S + + +G DD V KP E+LARV A+ RR K Sbjct: 75 ETPALILSALGQVDDRVKGLRAGGDDYVAKPYAFSELLARVEALARRRGGAKQEETVYRV 134 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187 G + + G+ L RE R+LEYLM + G+ V +T + ++ FD + Sbjct: 135 GDLELDRLAHKVTSAGQEIVLQPREFRLLEYLMKHAGQVVTRTMLLENVWDYHFDP--QT 192 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NV++ HIS+LR K+ + + R GY I Sbjct: 193 NVIDVHISRLRAKIDKSRETPLLHTIRGAGYMI 225 >gi|291514345|emb|CBK63555.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Alistipes shahii WAL 8301] Length = 226 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 17/150 (11%) Query: 63 LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + ++++A S+ VP+I + S T+ + G DD + KP RE+LARV ++ RR Sbjct: 64 MAQLLKADSETARVPMIFCTAKDSEDDTVAGLNIGADDYITKPFSVREVLARVRSVLRR- 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S RAE+ I +G + +++ G+ L ++E IL L++NRG ++ + Sbjct: 123 -TSAARAESESIHF--EGLEIDLRRKVCTLDGKELQLTKKEFEILALLLSNRGVIFSREE 179 Query: 173 IFSAIYGLFDEA-VEENVVESHISKLRKKL 201 I I+ DE V + V+ +I++LR+K+ Sbjct: 180 ILRRIWS--DEVIVLDRTVDVNITRLRRKV 207 >gi|229012628|ref|ZP_04169801.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228748651|gb|EEL98503.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 233 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 7/157 (4%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126 RA+ +PL+ ++ + F+ G DD + KP E+ RV A+ +R K+ S + Sbjct: 78 RANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIGSTQKI 137 Query: 127 ETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 G V D + +V E LP +E +L L G+ + Q+ I+G+ D A Sbjct: 138 HFG--NVILDRQTYKVMNGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGI-DYA 194 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ V+ HI +LR++ F +++ R LGY ++ Sbjct: 195 GDDRTVDVHIKRLRERFATTPDFR-IETVRGLGYRLE 230 >gi|229093969|ref|ZP_04225060.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] gi|228689451|gb|EEL43265.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] Length = 232 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172 KV+ N++ E G + + + R V GE L +E IL YL+A+ K+V + Sbjct: 124 LNQPKVAENKSALEVGGVTIDPERRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 IF ++ D+ E N V HI LRKKL Sbjct: 183 IFQHVWA--DDYYEGGNTVMVHIRTLRKKL 210 >gi|226228192|ref|YP_002762298.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226091383|dbj|BAH39828.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 238 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 18/178 (10%) Query: 35 EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94 +E L ++R+ + AI L L L + +RA +QVP++ +S + + ++G Sbjct: 39 QEGLTIASRQTLDAIILDLGLPDSTGLALCQSLRAFTQVPILVLSAMHDENSKVALLNAG 98 Query: 95 VDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ-------GEVF 147 DD V KP E++AR+ A RR VS+ R P+ + + ++Q G+ Sbjct: 99 ADDYVTKPFSSAELVARIHAHVRR--VSDRRDGISPVLLRLGDVELDLQQRVATRAGQPL 156 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAI----YGLFDEAVEENVVESHISKLRKKL 201 L E +L L+A RG+ + Q+F A+ YG D ++ V H++ LR+K+ Sbjct: 157 RLTPTEWTLLRVLVAQRGRTMTHRQLFLAVWNREYG--DASLHLRV---HLTHLRRKI 209 >gi|167760380|ref|ZP_02432507.1| hypothetical protein CLOSCI_02754 [Clostridium scindens ATCC 35704] gi|167662053|gb|EDS06183.1| hypothetical protein CLOSCI_02754 [Clostridium scindens ATCC 35704] Length = 231 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 15/155 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR S VP++ +S SL + G DD + KP E+LAR+ A RR Sbjct: 60 MDVMKTIREKSVVPILIVSAKDSLLDKSLGLELGADDYITKPFVMAEVLARIKANLRRTN 119 Query: 121 V----SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 S+ + E G I++ +G+ L +E IL LM N K K Sbjct: 120 QYAAGSSRKQEEPATLSCGDIQLNPADFTVRKRGKKIDLTAKEFEILRLLMQNPKKVYTK 179 Query: 171 TQIFSAIYGLFDEAV--EENVVESHISKLRKKLRN 203 QI+S ++ ++A +EN V HIS+LR K+ + Sbjct: 180 EQIYSLVW---EDAYLGDENAVNVHISRLRNKIED 211 >gi|160939367|ref|ZP_02086717.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC BAA-613] gi|158437577|gb|EDP15339.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC BAA-613] gi|291540515|emb|CBL13626.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 230 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 75/144 (52%), Gaps = 13/144 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + +P++ + + + +G DD + KP E++AR+A++ RR N++A Sbjct: 67 IRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNHQA 126 Query: 127 ------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179 + +++ + R + F LP +E +L Y ++GK + K QI+ ++G Sbjct: 127 GAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVWGE 186 Query: 180 --LFDEAVEENVVESHISKLRKKL 201 +D++ N++ + IS+LRKKL Sbjct: 187 EYFYDDS---NIM-AIISRLRKKL 206 >gi|154505490|ref|ZP_02042228.1| hypothetical protein RUMGNA_03027 [Ruminococcus gnavus ATCC 29149] gi|153794148|gb|EDN76568.1| hypothetical protein RUMGNA_03027 [Ruminococcus gnavus ATCC 29149] Length = 223 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 77/158 (48%), Gaps = 5/158 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + IR +P++ ++ +Q L + G D+ + KP H +LAR + +R + Sbjct: 63 LCKEIRKKGSLPILVLTSRDKMQDELKALELGADEYLTKPCHKDRLLARTENLLKR-AMG 121 Query: 123 NNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N G +F QG + +P + +IL+ L+ G V K I ++G Sbjct: 122 NAHLLDGDDFLFDTRTYTVCQGKDACHIPENQGKILKILLEYAGTEVKKECISKVLWGT- 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 E ++EN ++ ++++L+K L+ LG + +++ R GY Sbjct: 181 TEYIDENALQVNVTRLKKTLK-ALGLENRIETIRGRGY 217 >gi|163849781|ref|YP_001637824.1| response regulator receiver [Methylobacterium extorquens PA1] gi|163661386|gb|ABY28753.1| response regulator receiver [Methylobacterium extorquens PA1] Length = 232 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 9/167 (5%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L R +R + P++ +S + + +G DD + KP E+LAR + RR Sbjct: 60 LSLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRR 119 Query: 120 KVSNNRAETGPIRVFS---DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++E RV D V G L RE R+LEYLM + G+ V +T + Sbjct: 120 TAATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLL 179 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ FD + NV++ H+S+LR K+ + + R GY I Sbjct: 180 EHVWDYHFDP--QTNVIDVHVSRLRAKIDRGFEHPMIHTVRGAGYVI 224 >gi|152969364|ref|YP_001334473.1| DNA-binding transcriptional regulator BasR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893828|ref|YP_002918562.1| DNA-binding transcriptional regulator BasR [Klebsiella pneumoniae NTUH-K2044] gi|330014488|ref|ZP_08307928.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3] gi|150954213|gb|ABR76243.1| response regulator in two-component regulatory system with BasS (OmpR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546144|dbj|BAH62495.1| OmpR family response regulator in two-component regulatory system with BasS [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328533015|gb|EGF59789.1| transcriptional regulatory protein QseB [Klebsiella sp. MS 92-3] Length = 223 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 97/224 (43%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D AL+ G I +G +G ++ E S A S I L E L Sbjct: 3 ILVIEDDALLLQGLILAMQSEGYVCDGVST--AHEAALSLASNHYSLIVLDLGLPDEDGL 60 Query: 62 E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 L R+ R P++ ++ +L+ + D+G DD + KP E+ AR+ A+ RR Sbjct: 61 HFLSRMRREKMTQPVLILTARDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRHN 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N G +R+ R + L +E +L LM G V + +++ IY Sbjct: 121 NQGDNEISVGNLRLNVTRRLVWLGETALDLTPKEYALLSRLMMKAGSPVHREILYNDIYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D N +E HI LR+ K+G + + R GY + N Sbjct: 181 -WDNEPATNTLEVHIHNLRE----KIGKSRIRTVRGFGYMLANN 219 >gi|21232537|ref|NP_638454.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21243976|ref|NP_643558.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|66767377|ref|YP_242139.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|78048921|ref|YP_365096.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|166713155|ref|ZP_02244362.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|188990477|ref|YP_001902487.1| two-component system response regulator receiver / transcriptional regulator [Xanthomonas campestris pv. campestris str. B100] gi|289661862|ref|ZP_06483443.1| two-component system response regulator receiver / transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289666946|ref|ZP_06488021.1| two-component system response regulator receiver / transcriptional regulator [Xanthomonas campestris pv. musacearum NCPPB4381] gi|294624278|ref|ZP_06702985.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665372|ref|ZP_06730662.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325916232|ref|ZP_08178513.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|21109590|gb|AAM38094.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21114330|gb|AAM42378.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572709|gb|AAY48119.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|78037351|emb|CAJ25096.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|167732237|emb|CAP50429.1| two-component system response regulator receiver / transcriptional regulator [Xanthomonas campestris pv. campestris] gi|292601421|gb|EFF45451.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604875|gb|EFF48236.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325537526|gb|EGD09241.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 225 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 16/210 (7%) Query: 14 GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR--AHS 71 G+ F DGV+ L + + AI L G +E+ R +R A Sbjct: 24 GHTVDFAADGVT-----------GLHLAVVHEFDAIVLDLNLPGMDGIEVCRKLRNEARK 72 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130 Q P++ ++ SL L FDSG DD + KP +E+ R+ A+ RR K + R ETG Sbjct: 73 QTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQEVEVRLNALSRRGKGVHTRVLETGD 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + D + +G++ L +IL+ LM V + ++ + ++G +E + + + Sbjct: 133 LEYNLDTLEVRRRGKLLQLNPTALKILQALMEASPAVVTRQELETRVWG--EELPDSDSL 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 HI LR + + ++ +GY I Sbjct: 191 RVHIHGLRAVVDKPFDVPMIQTRHGIGYRI 220 >gi|150391007|ref|YP_001321056.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950869|gb|ABR49397.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 232 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 10/147 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ + IR SQVP++ ++ + D G DD + KP +E++ARV AI RR Sbjct: 66 EICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNN 125 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 LK G ++V D RD E + E+ L E ++L + N GK ++ ++ Sbjct: 126 EGLKAHLIELNGGDLKV--DLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDELV 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 + G +D + ++ HI LR K+ Sbjct: 184 VKVLG-YDYVGYDRTIDVHIKNLRHKI 209 >gi|332703144|ref|ZP_08423232.1| two component transcriptional regulator, winged helix family [Desulfovibrio africanus str. Walvis Bay] gi|332553293|gb|EGJ50337.1| two component transcriptional regulator, winged helix family [Desulfovibrio africanus str. Walvis Bay] Length = 231 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 9/186 (4%) Query: 41 SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100 S D ++ L G G +E+ R +R S++P+I ++ + + G DD V Sbjct: 46 SGAYDAVILDVMLPGLGG--VEVLRRVRQASRIPIIMLTAKGDHVDRIVGLEMGADDYVP 103 Query: 101 KPIHHREILARVAAIYRRLKVSNNR--AET---GPIRVFSDGRDPEVQGEVFPLPRRERR 155 KP + RE++AR+ A+ RR+ + R ET G +++ R G+ L E Sbjct: 104 KPCYPRELVARLRAVLRRMADAGERPPGETLVQGKLKLLPPQRKVSWDGKPLDLTVSEFN 163 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKR 214 +LE L+ + V+K ++ G E + + V+ H+S LR+KL G + +++ R Sbjct: 164 LLEILLHEGDRVVSKDELSERALGRPREPYDRS-VDVHVSNLRQKLHAAAGDEICIETVR 222 Query: 215 FLGYSI 220 +GY + Sbjct: 223 GIGYRV 228 >gi|325266657|ref|ZP_08133334.1| DNA-binding response regulator [Kingella denitrificans ATCC 33394] gi|324982100|gb|EGC17735.1| DNA-binding response regulator [Kingella denitrificans ATCC 33394] Length = 232 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 22/170 (12%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + +RA S++P+I ++ + + G DD V KP RE+LAR+ AI RR + Sbjct: 68 LDVLKTVRAQSKIPVIMLTAKGDDIDRIIGLEMGADDYVPKPCQPRELLARINAILRRAQ 127 Query: 121 VSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N I +F R + L E +LE LM + G+ V+K Sbjct: 128 QTTENPSVVNSISASGITLFPAKRQAMIGDAALELTSTEFNLLEVLMRHAGQVVSKEN-- 185 Query: 175 SAIYGLFDEAVEENV------VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L EA++ + ++ HIS +R KL + + + R LGY Sbjct: 186 -----LSQEALDRKLAKFDRSIDVHISSIRHKLGDA---SLIQTVRGLGY 227 >gi|319950313|ref|ZP_08024232.1| putative OmpR family two-component response regulator [Dietzia cinnamea P4] gi|319436005|gb|EFV91206.1| putative OmpR family two-component response regulator [Dietzia cinnamea P4] Length = 235 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 6/135 (4%) Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVF 147 D FD G DD + KP + AR+ A+ RR E G + V R+ Sbjct: 89 DAFDLGADDYLVKPFSFVVLEARLRALVRRGAPERPATFEAGDLVVDPAAREVRRGDTRI 148 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV--EENVVESHISKLRKKLRNKL 205 + RE +LEYL+ NR + V+K QI A++ D A ++N+VE ++ LR+K+ Sbjct: 149 SVTAREYAVLEYLIRNRNQVVSKAQIMRAVW---DSAYDGDDNIVEVYVGYLRRKIDAPF 205 Query: 206 GFDPVDSKRFLGYSI 220 G +++ R GY + Sbjct: 206 GAHAIETVRGQGYRL 220 >gi|313887650|ref|ZP_07821332.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846259|gb|EFR33638.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] Length = 233 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 15/168 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E R IR S VP+I ++ + + G DD V KP RE+LARV A+ RR Sbjct: 62 FEALREIRKTSDVPVIMLTAREEEVDKVLGLELGADDYVVKPFSMRELLARVKAVLRRFD 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAKT 171 + + ++ ++V D E+ EV L RE +L++L + G+ ++ Sbjct: 122 SPDKKDDSSILKVM----DLEIDLNKYQVLRGDEVIELTLREFELLKFLASYPGRVFSRE 177 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 ++ ++ ++ + V+ + +LR+K+ + K GF + +KR +GY Sbjct: 178 ELLEEVWE-YEYYGDIRTVDVTVRRLREKIEDEKKGFKYIKTKRGVGY 224 >gi|331673604|ref|ZP_08374367.1| transcriptional regulatory protein BaeR [Escherichia coli TA280] gi|331068877|gb|EGI40269.1| transcriptional regulatory protein BaeR [Escherichia coli TA280] Length = 240 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 8/156 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167 I RR K + AE+ P+ + +GR + ++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRSKMLDLTPAEFRLLKTLSHEPGKV 179 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 180 FSREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|307250506|ref|ZP_07532451.1| Phosphate regulon transcriptional regulatory protein phoB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857448|gb|EFM89559.1| Phosphate regulon transcriptional regulatory protein phoB [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 201 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 75/149 (50%), Gaps = 3/149 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 +Q+P++ ++ S + ++G DD V KP + ++AR+ ++ RR +N+ Sbjct: 46 AQIPILMLTARSSEDDCIVCLNTGADDYVTKPFSPKVLIARIESLLRRTYQNNDIINIDD 105 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + Q + L E ++L + M + K ++ Q+ ++G D VE+ V Sbjct: 106 LILDQNAKRVTFQKKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWG-NDIYVEDRTV 164 Query: 191 ESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +S+I +LRK L GF+ V + R GY Sbjct: 165 DSYIRRLRKSL-EPCGFERYVQTVRGSGY 192 >gi|288555603|ref|YP_003427538.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] gi|288546763|gb|ADC50646.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] Length = 226 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 27/207 (13%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK--GEKVLELP 64 D L K+GY + DG + + E++L+ S I ++ K GE+V + Sbjct: 19 DIYLKKEGYDVILAADGETAK-------EQFLKYSP---CLVILDLMLPKISGEEVCQWI 68 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-----L 119 R + ++V +I ++ S + G DD V KP E++AR+ A+ RR Sbjct: 69 RA-QERNEVSIIMVTAKTSSDHKISGLKMGADDYVTKPFSPNELMARIEAVLRRGGQFCQ 127 Query: 120 KVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K+S+ P R EV GE+ PL + E +L Y M N +++ Q+ I Sbjct: 128 KISHEGLVIKP-------RKGEVLLNGELVPLTKYEFNLLYYFMENPNIVLSREQLIKQI 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 + + + + +++HI KLR+K+ + Sbjct: 181 HPDDEADILDRTIDAHIKKLREKIETE 207 >gi|228955130|ref|ZP_04117144.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804541|gb|EEM51146.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 232 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172 KV+ N++ E G + + + R V GE L +E IL YL+A+ K+V + Sbjct: 124 LNQPKVAGNKSALEVGGVIIDPEQRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 IF ++ D+ E N V HI LRKKL Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210 >gi|261408624|ref|YP_003244865.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329927373|ref|ZP_08281632.1| heme response regulator HssR [Paenibacillus sp. HGF5] gi|261285087|gb|ACX67058.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328938512|gb|EGG34897.1| heme response regulator HssR [Paenibacillus sp. HGF5] Length = 224 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 3/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126 RA+ +PL+ ++ + F+ G DD + KP E+ RV A+ +R ++ S Sbjct: 69 RANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYRIGSTQTI 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + G + + E LP +E +L L G+ + Q+ I+G+ D A + Sbjct: 129 QFGNVILDRQTYKVSSGPETLTLPLKEFELLYKLAGTPGQVYTREQLIDQIWGI-DYAGD 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V+ HI +LR++ F +++ R LGY ++ Sbjct: 188 DRTVDVHIKRLRERFATTPDFR-IETVRGLGYRLE 221 >gi|297585569|ref|YP_003701349.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297144026|gb|ADI00784.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 236 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 8/150 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R +P+I ++ S + + G DD V KP RE++ARV A RR + Sbjct: 63 MEVCREVRKEHDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRNQ 122 Query: 121 VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S +ETG + + D +GE L RE ++ YL + G+ + + + Sbjct: 123 RSAEDSETGTKNIDVGVLSIQPDAYLVTKRGEAIELTHREFELIHYLARHIGQVMTREHL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203 A++G +D + V+ + +LR+K+ + Sbjct: 183 LQAVWG-YDYFGDVRTVDVTVRRLREKVED 211 >gi|148378772|ref|YP_001253313.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931201|ref|YP_001383160.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936292|ref|YP_001386708.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148288256|emb|CAL82330.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927245|gb|ABS32745.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932206|gb|ABS37705.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 230 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 9/167 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 EL IR +P+I IS ++ G DD + KP E+ AR+ + RR K Sbjct: 65 ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124 Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 SN N + I + D R+ + + L RE IL+ LM K K +F + Sbjct: 125 FSNITLQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKANLFES 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221 ++ + ++N + HIS LR KL +K G D + + +GY +D Sbjct: 185 VWS-SEYLCDDNTINVHISNLRNKL-SKAGTDNEYIQTIWGIGYKLD 229 >gi|138893945|ref|YP_001124398.1| subtilin biosynthesis regulatory protein SpaR [Geobacillus thermodenitrificans NG80-2] gi|196250503|ref|ZP_03149194.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134265458|gb|ABO65653.1| Subtilin biosynthesis regulatory protein SpaR [Geobacillus thermodenitrificans NG80-2] gi|196209993|gb|EDY04761.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 232 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 10/169 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +EL IIR P++ +S + + G DD + KP +E+ AR+ + RR + Sbjct: 62 MELCTIIRDRVDYPIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDSHLRREE 121 Query: 121 V--SNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 SN R + D EV +G+ PL ++E I++ LM N+ +K +IF Sbjct: 122 RIRSNERYLLSSKNITIDLLANEVFCKGKKLPLTKKEYEIVKLLMLNKKVVFSKERIFER 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDWN 223 ++G+ ++ + V ES I +RKK++ DP S + G W+ Sbjct: 182 VWGIDSDSQLDTVTES-IKNIRKKIK---AVDPETSYIQTLYGLGYKWD 226 >gi|332300440|ref|YP_004442361.1| two component transcriptional regulator, winged helix family [Porphyromonas asaccharolytica DSM 20707] gi|332177503|gb|AEE13193.1| two component transcriptional regulator, winged helix family [Porphyromonas asaccharolytica DSM 20707] Length = 233 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 10/166 (6%) Query: 62 ELPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 +L +IR ++ P+I ++ + L F+ G DD + KP +E+ AR+ AI R Sbjct: 65 KLAELIRRDKKLTTPIIFLTAKGTENDLLTGFNIGADDYMAKPFSIKELQARIQAILMRS 124 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 L ++ E G + + D + + GE L ++E IL L + K ++ +I Sbjct: 125 LQGGLDFEESQIEIGTLLIDLDAKQVFINGEPIDLTKKELEILILLARDPSKVFSREEIL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+ D V E ++ HI+++RKKLR G ++ F GY + Sbjct: 185 DRIWR-EDVFVMERTIDVHITRIRKKLRGS-GIKIINRSGF-GYCL 227 >gi|255746171|ref|ZP_05420118.1| DNA-binding response regulator [Vibrio cholera CIRS 101] gi|262168929|ref|ZP_06036623.1| DNA-binding response regulator [Vibrio cholerae RC27] gi|255735925|gb|EET91323.1| DNA-binding response regulator [Vibrio cholera CIRS 101] gi|262022628|gb|EEY41335.1| DNA-binding response regulator [Vibrio cholerae RC27] Length = 203 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I RA +P++ ++ + + D G D+ + KP E+LAR+ I RR S Sbjct: 48 LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 104 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE G + + ++ + L R E +IL LM G+ ++K + A++ Sbjct: 105 SGSAEELISVGELDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 164 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +DE +N +E HI LRKKL + L V + R +GY I+ Sbjct: 165 G-WDEGSSDNAIEVHIHNLRKKLPDNL----VKNVRGVGYMIE 202 >gi|229018483|ref|ZP_04175345.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229024739|ref|ZP_04181178.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228736582|gb|EEL87138.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228742835|gb|EEL92973.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 225 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 69 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 IKLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|239820125|ref|YP_002947310.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239804978|gb|ACS22044.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 229 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 22/222 (9%) Query: 13 DGYIALFGDDGVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 D +A F G+ EGF ++ + L+ + R D++ + L+ G LEL + RA Sbjct: 11 DPRVADFLVRGLKAEGFAVTHARTGPQGLELARRGDLALLILDLMLPGINGLELCQTFRA 70 Query: 70 HS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA----------IYRR 118 Q P++ ++ + + ++ G DD + KP E+LAR+ A Sbjct: 71 EGGQTPVLMLTAMSTTEDKVNGLRLGADDYLTKPFDFEELLARIEALLRRGRDLRLRVTT 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L+V+N + +RV E G+ L +E LE LM+ G+ ++ +I + ++ Sbjct: 131 LRVANLVLDRERMRV-------ERAGQPITLTAKELAFLELLMSAPGRVYSRERILATVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G ++ + N+V+ ++ +LR K+ + + R LGY I Sbjct: 184 GTHEDPL-TNIVDVYVRRLRMKIDGDHAVQLLQTVRGLGYRI 224 >gi|158423564|ref|YP_001524856.1| response regulator receiver [Azorhizobium caulinodans ORS 571] gi|158330453|dbj|BAF87938.1| response regulator receiver [Azorhizobium caulinodans ORS 571] Length = 222 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 12/151 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----T 128 VP+I ++ SL + D G DD + KP E+ AR+ RR S RA+ Sbjct: 73 VPVIILTANASLDGRVAGLDEGADDYLAKPFDMAELEARIRVQLRR---SARRADPIITC 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + R + L RE +LE L+ G+ V+K Q+ I+GL D+ + + Sbjct: 130 GGLAFDTKTRQFRLGEAPLSLTPREHAVLEALLVKTGQTVSKAQLSQTIFGL-DDLADPS 188 Query: 189 VVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218 +E ++ +LR+KL G D + + R LGY Sbjct: 189 AIEIYVHRLRRKLE---GSDVSIVTLRGLGY 216 >gi|156935705|ref|YP_001439621.1| DNA-binding transcriptional regulator BasR [Cronobacter sakazakii ATCC BAA-894] gi|156533959|gb|ABU78785.1| hypothetical protein ESA_03574 [Cronobacter sakazakii ATCC BAA-894] Length = 220 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++++D L+++G G++G +L+ N+ E + LQS + G + Sbjct: 3 LLIVEDDLLLQEGLALALGNEGYALDCAANAAEGDALLQSGEYSLIILDLGLPDKDGATL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R R+ P++ ++ +L+ + D+G DD + KP E+ AR A+ RR + Sbjct: 63 LSQWR--RSGVTTPVLILTARDALEDRVSGLDAGADDYLVKPFALAELHARARALIRRYQ 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+N + I + + +QG + +E +L LM G+ V + + IY Sbjct: 121 GHSDNLLQHDDITLNLQTQQVLLQGMPVEVTPKEFALLTRLMMRIGQTVHRETLQQDIYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D+ N +E HI LR+ KLG + + R +GY ++ Sbjct: 181 WQDDP-SSNTLEVHIHNLRR----KLGKTRIRTIRGVGYRLE 217 >gi|78188418|ref|YP_378756.1| two component transcriptional regulator [Chlorobium chlorochromatii CaD3] gi|78170617|gb|ABB27713.1| two component transcriptional regulator, winged helix family [Chlorobium chlorochromatii CaD3] Length = 225 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 2/161 (1%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R +R A VP+I ++ +L+ L ++G +D + KP E+LAR+ R Sbjct: 60 IEVCRQVRKAGCLVPIIFLTARDTLEDVLFGLEAGANDYIKKPFAFEELLARIRVQLRSR 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 G + + G L +E +LEYL+ N+ + +++I ++ Sbjct: 120 TQGEESLSAGGVTLNPATHQVTYNGSELILTPKEFALLEYLLRNKDRVCTRSRIIEHVWD 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +A + +V++ +I+ LR+KL + + + R +GY I Sbjct: 180 IHFDA-DTSVIDVYITFLRRKLEAVGCNNFIQTIRGIGYII 219 >gi|54307452|ref|YP_128472.1| transcriptional regulator CpxR [Photobacterium profundum SS9] gi|46911872|emb|CAG18670.1| hypothetical transcriptional regulator CpxR [Photobacterium profundum SS9] Length = 162 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 18/141 (12%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGP-------IRVFSDGRDPEV 142 + G DD + KP RE+LAR+ AI RR +++ NN+ P I ++ ++ Sbjct: 21 LELGADDYLPKPFSDRELLARIRAILRRTQLTENNQRANEPECISYQDINIYPGRQEVFC 80 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLR 198 GE + E +L YL+ + GK +AK ++ + G FD A ++ H+S LR Sbjct: 81 LGESIEMTGTELALLSYLIQHPGKIIAKNELSMEVLGKRLAQFDRA-----IDMHVSNLR 135 Query: 199 KKLRNKLGFDP-VDSKRFLGY 218 KKL + P + + R GY Sbjct: 136 KKLPERADGKPRIKTLRGKGY 156 >gi|109897312|ref|YP_660567.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109699593|gb|ABG39513.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] Length = 235 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 10/134 (7%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRL---------KVSNNRAETGPIRVFSDGRDPEVQG 144 G DD + KP +HRE+ ARV AI RR+ K N E G + + + Sbjct: 97 GADDYLAKPFNHRELSARVKAIVRRVDIQAGLQSDKQKQNTIEIGDVELNIAAQTVACNA 156 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 + L E +L+ LM+ V K I + G A + + ++ H+S LRKKL + Sbjct: 157 QQVELTGTEFAVLKLLMSCSPDLVPKQAISEQVLGRKLAAFDRS-IDMHVSNLRKKLSHF 215 Query: 205 LGFDPVDSKRFLGY 218 D + + R +GY Sbjct: 216 SDHDKIKTHRGVGY 229 >gi|325841247|ref|ZP_08167348.1| response regulator receiver domain protein [Turicibacter sp. HGF1] gi|325489928|gb|EGC92275.1| response regulator receiver domain protein [Turicibacter sp. HGF1] Length = 230 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 8/143 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP++ ++ Y F +G DD + KP + ++L RV A+ RR ++ Sbjct: 67 IRQKSFVPILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKALLRRAYQYHSTT 126 Query: 127 ET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + V + ++G+ L E +IL L+ +R K + QI+ +I+ Sbjct: 127 QVKVEPTITIGDLVVDLNSTRVILEGKEVSLTTTEYKILRLLITHRKKIFSMEQIYQSIW 186 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 + + +N V H+ LRKK+ Sbjct: 187 NDSGQVIGDNAVMVHVRNLRKKI 209 >gi|319789306|ref|YP_004150939.1| two component transcriptional regulator, winged helix family [Thermovibrio ammonificans HB-1] gi|317113808|gb|ADU96298.1| two component transcriptional regulator, winged helix family [Thermovibrio ammonificans HB-1] Length = 223 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 20/187 (10%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA---HSQVPLIGISDYPSLQT 86 + LE E L+S + D+ ++ L G L+L R +R + P+I ++ T Sbjct: 33 DGLEARELLKSR-KYDIIVLDLML--PGVNGLDLCREVRLRGINKDTPIIVLTAIGDEDT 89 Query: 87 TLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ--G 144 + ++G DD V KP +E+LAR+ A+ RR S G + D R V G Sbjct: 90 KVHGLEAGADDYVTKPFSIKELLARIEAVLRRAGYSEVLEFEG---IVEDKRSKSVTVDG 146 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN----VVESHISKLRKK 200 + L + E ++LE+ + + + ++ ++ I+G VE N V+ +IS+LRKK Sbjct: 147 KPIHLTKTELQLLEFFLEHPEQLFSREELLEKIWG-----VEHNETTRTVDVYISRLRKK 201 Query: 201 LRNKLGF 207 L +K F Sbjct: 202 LGDKGKF 208 >gi|332652344|ref|ZP_08418089.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332517490|gb|EGJ47093.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 224 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 25/173 (14%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 EL R +R S +P++ +S + + G DD + KP + EI+ARV A RR Sbjct: 63 ELTRALRKFSDIPILILSAKSQDNDKILGLNLGADDYITKPFNPVEIVARVKAQLRRASR 122 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 L V +T ++ +G+ Q + P+ E +IL LM + G+ K Q+ Sbjct: 123 SGSDILTVRELTLDTTTFQLTKNGK----QILLTPM---EYKILALLMRSPGRIYTKIQL 175 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221 + G + E ++N + HISKLR K+ + DP + + R LGY ++ Sbjct: 176 YEGAIGNYFEG-DDNTMMVHISKLRDKIED----DPKSPRYIITVRGLGYKLE 223 >gi|206562479|ref|YP_002233242.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198038519|emb|CAR54477.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 221 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 105/215 (48%), Gaps = 20/215 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68 L + G+ DG + G +E R D+ ++A L G G VL R +R Sbjct: 20 LARLGHAVDLETDGATANGLLRVE---------RFDLVVLDANLPGMDGFTVL---RNLR 67 Query: 69 AH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 A S P++ ++ ++ + G DD + KP +RE+ ARV A+ RR N Sbjct: 68 ASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHANDVL 127 Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAV 185 T G + + R E+ G+ L R+E +LE ++A+R +R+ +K ++ + ++ +E Sbjct: 128 TLGGLVIDRSSRLAELDGQPLSLSRQEFALLE-ILASRPQRIFSKEELLNQLFSFGNEPT 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N VE +++++R+KL+ + + R +GY I Sbjct: 187 -ANAVEQYVTRVRRKLQGS--SVEIRTARGMGYQI 218 >gi|152984558|ref|YP_001346459.1| DNA-binding response regulator [Pseudomonas aeruginosa PA7] gi|150959716|gb|ABR81741.1| DNA-binding response regulator [Pseudomonas aeruginosa PA7] Length = 238 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 11/149 (7%) Query: 61 LELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L+L R R H + P I ++ + Q + +SG DD V+KP E+ ARVAA+ RR Sbjct: 66 LQLLRWSREHLDAPPPAIMLTSRDAEQDIVQALNSGADDYVSKPFRPNELKARVAAVLRR 125 Query: 119 LKVSNNRAETGPIRVFSDGR--DPEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + R ++ F+D D E+ G L RE R+ L AN G+ +++ Sbjct: 126 HAAT--RPAQHEMQTFNDLSFDDAELTVTRAGAPISLTEREYRLARCLFANLGRPLSREY 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ + +E + +++HI +LR KL Sbjct: 184 LYERFWP-HEEVLSSRPLDTHIYRLRNKL 211 >gi|51209875|ref|YP_063539.1| Ycf27 [Gracilaria tenuistipitata var. liui] gi|50657629|gb|AAT79614.1| ompR transcriptional regulator [Gracilaria tenuistipitata var. liui] Length = 241 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 9/146 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125 IR S VP+I ++ + + + G DD V KP +E+ AR+ + RR+ K++ N Sbjct: 71 IRKESDVPIIMLTALGDVSDRITGLELGADDYVIKPFSPKELEARIRCVLRRVYKININS 130 Query: 126 A-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G +++ ++ R + E L E +LE L++ G+ +++ I ++ Sbjct: 131 SIPSSGILNMGFLKIDTNKRQVYKKNERVRLTGMEFSLLELLVSKAGEAFSRSSILQEVW 190 Query: 179 GLFDE-AVEENVVESHISKLRKKLRN 203 G E V+ VV+ HIS+LR KL + Sbjct: 191 GYKPERHVDTRVVDVHISRLRAKLED 216 >gi|329116636|ref|ZP_08245353.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] gi|326907041|gb|EGE53955.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] Length = 239 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 13/128 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLK--------VSNNRAETGPIRVFSDGRDPEVQGE 145 G DD + KP RE++ARV AI RR + +S+ + +RVF D + + Sbjct: 96 GADDYLTKPFSPRELIARVKAILRRTEKDQTDDNDLSDEQWVVNGLRVFPDRHEVYKDND 155 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 + L +E +L YL+ + + + ++ I+G +D E +V+ HI KLR+K+ + Sbjct: 156 MLNLTPKEYELLLYLIKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKVED-- 212 Query: 206 GFDPVDSK 213 DP + K Sbjct: 213 --DPKNPK 218 >gi|325919042|ref|ZP_08181103.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325550478|gb|EGD21271.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 225 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 16/210 (7%) Query: 14 GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR--AHS 71 G+ F DGV+ L + + AI L G +E+ R +R A Sbjct: 24 GHTVDFAADGVT-----------GLHLAVVHEFDAIVLDLNLPGMDGIEVCRKLRNEARK 72 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130 Q P++ ++ SL L FDSG DD + KP +E+ R+ A+ RR K + R ETG Sbjct: 73 QTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQEVEVRLNALSRRGKGVHTRVLETGD 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + D + +G++ L +IL+ LM V + ++ + ++G +E + + + Sbjct: 133 LEYNLDTLEVRRRGKLLQLNPTALKILQSLMEASPAVVTRQELETRVWG--EELPDSDSL 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 HI LR + + ++ +GY I Sbjct: 191 RVHIHGLRAVVDKPFDVPMIQTRHGIGYRI 220 >gi|251782338|ref|YP_002996640.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390967|dbj|BAH81426.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 217 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 3/141 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S +P+I ++ T L F+ + D V KP ++ R+ + R+ Sbjct: 61 LEVLKTIRKTSDIPIIMLTALDDEYTQLVSFNHLISDYVTKPFSPLILIKRIENVL-RVS 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + G + V QG + L ++E I++YL K V + Q+ I+G Sbjct: 120 TPDEKHQIGDLLVDEIEHSVYWQGTLVKLTKKEYDIIDYLAKRHQKVVTRDQLMDDIWGY 179 Query: 181 FDEAVEENVVESHISKLRKKL 201 ++ V+++HI LRKK+ Sbjct: 180 --SELDTRVLDNHIKNLRKKM 198 >gi|271962011|ref|YP_003336207.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505186|gb|ACZ83464.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 222 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 72/138 (52%), Gaps = 7/138 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ +S +D D+G DD V KP + E+LAR+ A+ RR + + + Sbjct: 67 LRGWTSIPIVVLSGRAGGADKVDALDAGADDYVTKPFNIDELLARIRAVTRRTALHD--S 124 Query: 127 ETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E IR+ D V G V P E +LE L+ N GK +++ ++ + ++G Sbjct: 125 ELARIRIGDHVVDLVGKTVSGGVRLTP-TEWHLLEILLRNPGKLISQRRLLTEVWG-AKY 182 Query: 184 AVEENVVESHISKLRKKL 201 E + + +++++RKKL Sbjct: 183 LKETHYLRQYMTQMRKKL 200 >gi|171778282|ref|ZP_02919488.1| hypothetical protein STRINF_00330 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282982|gb|EDT48406.1| hypothetical protein STRINF_00330 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 226 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 75/145 (51%), Gaps = 5/145 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + I + +Q +I ++ + + D+G DD + KP +E+LAR+ ++ RR+ Sbjct: 63 VQEIRQTGNQSHIIMLTAMAEIDDRVTGLDAGADDYLTKPFSLKELLARLRSMSRRVDTN 122 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++N + G + + G L +E ++LE+ M N GK+++ Q+F+ ++ Sbjct: 123 FTSNILKLGSV-TLNVGEQELASQNTIRLAGKEAKMLEFFMLNPGKKLSTEQLFNHVWAS 181 Query: 181 --FDEAVEENVVESHISKLRKKLRN 203 D ++E V ++S LR+KL++ Sbjct: 182 DKDDPEIDEGYVFIYVSYLRQKLQS 206 >gi|220911674|ref|YP_002486983.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219858552|gb|ACL38894.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 236 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 13/135 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 G DD V KP E++AR+ A+ RR L + G + + D + G V L Sbjct: 101 GGDDYVTKPFSLDEVVARIRAVLRRTQPLLDDDAVIRVGDLELDDDAHEVRRGGTVIELS 160 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP- 209 E ++L YLM N + ++K+QI ++ +D + ++VES+IS LR+ K+ DP Sbjct: 161 PTEFKLLRYLMLNPNRVLSKSQILDHVWE-YDFNGDASIVESYISYLRR----KVDIDPD 215 Query: 210 ----VDSKRFLGYSI 220 + +KR +GY + Sbjct: 216 APALIQTKRGVGYVL 230 >gi|87118795|ref|ZP_01074694.1| two-component system, regulatory protein [Marinomonas sp. MED121] gi|86166429|gb|EAQ67695.1| two-component system, regulatory protein [Marinomonas sp. MED121] Length = 223 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 6/167 (3%) Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 GE+VL R+ + P++ ++ ++ + D G DD + KP E AR A+ Sbjct: 58 NGEQVLNKLRV--RQTNTPVLILTARNQVEDRIQLLDLGADDYLTKPFDFGEFDARCRAL 115 Query: 116 YRRLK-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + + N G + + V + L +RE R+LE + + G ++K + Sbjct: 116 LRRHQGQAQNVISYGNLSLDRKACCVYVDQVLVDLKQREFRLLEIFITHTGWVLSKDDLI 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +Y FDE N +E ++++LRKKL+ + + R LGY ++ Sbjct: 176 DHLYN-FDEPPSPNAIELYVARLRKKLQTSAV--EIRTLRGLGYILE 219 >gi|188494474|ref|ZP_03001744.1| DNA-binding response regulator CreB [Escherichia coli 53638] gi|254037410|ref|ZP_04871487.1| DNA-binding response regulator CreB [Escherichia sp. 1_1_43] gi|260858572|ref|YP_003232463.1| DNA-binding response regulator CreB in two-component regulatory system with CreC [Escherichia coli O26:H11 str. 11368] gi|188489673|gb|EDU64776.1| DNA-binding response regulator CreB [Escherichia coli 53638] gi|226840516|gb|EEH72518.1| DNA-binding response regulator CreB [Escherichia sp. 1_1_43] gi|257757221|dbj|BAI28723.1| DNA-binding response regulator CreB in two-component regulatory system with CreC [Escherichia coli O26:H11 str. 11368] gi|284924577|emb|CBG37716.1| two-component response regulator [Escherichia coli 042] gi|309704906|emb|CBJ04259.1| two-component response regulator [Escherichia coli ETEC H10407] gi|323157712|gb|EFZ43817.1| transcriptional regulatory protein creB [Escherichia coli EPECa14] gi|323935191|gb|EGB31554.1| response regulator receiver domain-containing protein [Escherichia coli E1520] gi|323960113|gb|EGB55758.1| response regulator receiver domain-containing protein [Escherichia coli H489] gi|332346446|gb|AEE59780.1| transcriptional regulatory protein CreB [Escherichia coli UMNK88] Length = 229 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 104/224 (46%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQAPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ ++ Sbjct: 125 FSSPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDSV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + +++HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-IDTHIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|15599227|ref|NP_252721.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107103546|ref|ZP_01367464.1| hypothetical protein PaerPA_01004616 [Pseudomonas aeruginosa PACS2] gi|116052069|ref|YP_789087.1| two-component regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218889687|ref|YP_002438551.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254236921|ref|ZP_04930244.1| hypothetical protein PACG_02944 [Pseudomonas aeruginosa C3719] gi|254242715|ref|ZP_04936037.1| hypothetical protein PA2G_03479 [Pseudomonas aeruginosa 2192] gi|296387414|ref|ZP_06876913.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313109475|ref|ZP_07795431.1| putative two-component regulator [Pseudomonas aeruginosa 39016] gi|9950227|gb|AAG07419.1|AE004820_4 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115587290|gb|ABJ13305.1| probable two-component regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126168852|gb|EAZ54363.1| hypothetical protein PACG_02944 [Pseudomonas aeruginosa C3719] gi|126196093|gb|EAZ60156.1| hypothetical protein PA2G_03479 [Pseudomonas aeruginosa 2192] gi|218769910|emb|CAW25671.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] gi|310881933|gb|EFQ40527.1| putative two-component regulator [Pseudomonas aeruginosa 39016] Length = 238 Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 11/149 (7%) Query: 61 LELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L+L R R H + P I ++ + Q + +SG DD V+KP E+ ARVAA+ RR Sbjct: 66 LQLLRWSREHLDAPPPAIMLTSRDAEQDIVQALNSGADDYVSKPFRPNELKARVAAVLRR 125 Query: 119 LKVSNNRAETGPIRVFSDGR--DPEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R ++ F+D D E+ G L RE R+ L AN G+ +++ Sbjct: 126 --HGGTRPAQHEVQTFNDLSFDDAELTVTRAGAPISLTEREYRLARCLFANLGRPLSREY 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ + +E + +++HI +LR KL Sbjct: 184 LYERFWP-HEEVLSSRPLDTHIYRLRNKL 211 >gi|328954866|ref|YP_004372199.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] gi|328455190|gb|AEB06384.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] Length = 247 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 77/172 (44%), Gaps = 12/172 (6%) Query: 57 GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 GE+++EL IRA + P+I IS + +D G DD + KP E+LARV Sbjct: 77 GEQLVEL---IRARDASAPIIVISARAAPSDKIDLLKLGADDYLAKPFDLDELLARVEVQ 133 Query: 116 YRRLKVSNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R + + A + ++ R GE L R E I+E LM + + Sbjct: 134 LRHRRAPSGTAPGAHGALGFRSWELDTEARTLTAHGEPVALTRIEFNIVEILMRHPRRVF 193 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 K ++F +G A ++N + H+S +R KLR D + + +G+ + Sbjct: 194 TKQELFEGAWG-EPYAADDNTINVHVSNIRTKLRASGTADYIRTVWGMGFKL 244 >gi|300853845|ref|YP_003778829.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300433960|gb|ADK13727.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 229 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 11/159 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR +S VP+I +S + G DD + KP RE+ ARV A RR Sbjct: 62 IEVLRKIRENSTVPVIILSAKNEETDRVIGLSMGADDYMIKPFSTRELAARVKAQLRRYI 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIF 174 NN + P + + + F L +E +L++ + N + K QIF Sbjct: 122 YYNNVHDKNPTLTYKSLKLDTSNHKFFKEDKELNLTPKEFELLKFFLKNPDRVFTKAQIF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 + ++ D ++N V HI K+LRNK+ +P + K Sbjct: 182 NGVWE-NDYLHDDNTVMVHI----KRLRNKIEDNPNNPK 215 >gi|254292563|ref|YP_003058586.1| transcriptional regulator [Hirschia baltica ATCC 49814] gi|254041094|gb|ACT57889.1| two component transcriptional regulator, winged helix family [Hirschia baltica ATCC 49814] Length = 230 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 17/228 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV- 60 L+DD + + A F +G ++ ++ + E LQ A A L K K+ Sbjct: 4 IALVDDDENIVESLKAFFEAEGYTVRAYH--DGEAALQGLAEHPPEL--AILDVKMPKMD 59 Query: 61 -LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +EL R +R S +P I ++ + F+ G DD + KP R + RV A+ RR Sbjct: 60 GMELLRRLRQTSNLPAIFLTSKDDEIDEVVGFNIGADDFIRKPCSMRLLSERVKAVLRRS 119 Query: 120 KVS--NNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + PI S DP +GEV L E IL+ L G ++ Q Sbjct: 120 RGAGVSEEGDKKPIVRGSLTLDPNRHACTWKGEVVRLTVTEFLILQALSTRPGYVKSRDQ 179 Query: 173 IFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 + A Y D+ V++ ++SHI +LRKK R++ FD +++ +GY Sbjct: 180 LMDAAYD--DQVYVDDRTIDSHIKRLRKKFRDQDDEFDSIETLYGVGY 225 >gi|229099289|ref|ZP_04230220.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229118303|ref|ZP_04247659.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228665133|gb|EEL20619.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228684107|gb|EEL38054.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 229 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 65/150 (43%), Gaps = 8/150 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S+VP+I ++ TL F+ G DD V KP +LAR + K S Sbjct: 66 RRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKASKK 125 Query: 125 RAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E I V R V L E IL Y M N+G + + Q+ S I Sbjct: 126 PLENEDDTLSIHGIHVHFPSRTVTVDEVDVSLTHTEFEILVYFMKNQGIVLTREQLISRI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207 +G ++ A ++ V SHI LR KL K + Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|218897513|ref|YP_002445924.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228901111|ref|ZP_04065315.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222] gi|218541801|gb|ACK94195.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228858517|gb|EEN02973.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222] Length = 231 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 13/207 (6%) Query: 27 EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+N + + +E LQ + +V + ++ LE+ + +R ++ VP++ +S Sbjct: 25 EGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135 + +G DD + KP + E++ARV A+ RR N + E G IR+ S Sbjct: 85 DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSQKNEDGIIRIRSVEIHK 144 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 +V GE L E IL L +N G+ + +IF ++ D V HIS Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203 Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221 LR KL + G + + +GY I+ Sbjct: 204 NLRDKLETVMNGEKFIHTVWGVGYKIE 230 >gi|198242939|ref|YP_002215027.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937455|gb|ACH74788.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326622781|gb|EGE29126.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 226 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 14/214 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + L + GY+ + DG + L + +E S I ++ G ++ R + Sbjct: 18 QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 66 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ R Sbjct: 67 RTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 126 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 + + + + G+ L R+E +L L + G+ V +T I S ++G+ FD E Sbjct: 127 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 184 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N V+ I +LR K+ + + R +GY + Sbjct: 185 TNTVDVAIRRLRAKVDEPFEKKLIMTVRGMGYRL 218 >gi|49481182|ref|YP_036122.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332738|gb|AAT63384.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 254 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/156 (21%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + ++P++ ++ + F G DD + KP E++ RV A+ +R +++ +++ Sbjct: 97 LRKYYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 156 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + + + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 157 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 215 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + + + + R LGY ++ Sbjct: 216 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 251 >gi|62127249|gb|AAX64952.1| Copper resistance; transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 248 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 14/214 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + L + GY+ + DG + L + +E S I ++ G ++ R + Sbjct: 40 QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 88 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R Q P I ++ S++ + ++G +D + KP E+LARV A R+ R Sbjct: 89 RTAHQSPAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 148 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 + + + + G+ L R+E +L L + G+ V +T I S ++G+ FD E Sbjct: 149 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 206 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N V+ I +LR K+ + + + R +GY + Sbjct: 207 TNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240 >gi|152966980|ref|YP_001362764.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151361497|gb|ABS04500.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 273 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 20/205 (9%) Query: 31 SLEFEEWLQSSAREDVSAIEAFLIGKGEKV-----------LELPRIIRAH-SQVPLIGI 78 +L +E W +A + A+ A + + V LE+ R +RA + VP++ + Sbjct: 59 TLRYEGWEVQTAGNGLDAVRAARSFRPDAVILDIMLPDIDGLEVLRRLRADATDVPVLFL 118 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVF 134 + +++ + +G DD V KP E++AR+ ++ RR + + E G + + Sbjct: 119 TAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRSLLRRSGLVAAKQEPVLAVGDLVLD 178 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D + G+ L E +L YLM N + ++K QI ++ +D + N+VE ++ Sbjct: 179 EDSHEVTRAGQEIRLTATEFELLRYLMRNPRRVLSKAQILDRVWN-YDFGGQANIVELYV 237 Query: 195 SKLRKKLRNKLGFDP-VDSKRFLGY 218 S LR+K+ G +P + + R GY Sbjct: 238 SYLRRKI--DAGRNPMIHTVRGAGY 260 >gi|325568329|ref|ZP_08144696.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|325158098|gb|EGC70251.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 228 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 76/152 (50%), Gaps = 3/152 (1%) Query: 52 FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 ++ K + + L + + + + P+I ++ + + D+G DD + KP +E+LAR Sbjct: 52 IMLPKIDGITLLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLAR 111 Query: 112 VAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + ++ RR L ++ G + + + L +E +++E +A ++ Sbjct: 112 IRSLGRRKDLDYQEDQLAFGNVGLDRNELQLATPSNQVVLSPKEMKLMELFLARPKVILS 171 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 K I + I+G FD VEEN VE ++S LRKKL Sbjct: 172 KETIINKIWG-FDPDVEENRVEIYVSLLRKKL 202 >gi|323351005|ref|ZP_08086662.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|322122729|gb|EFX94438.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] Length = 234 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD + KP +E+LAR+ ++ RR+ + N + G + G + L Sbjct: 92 LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202 +E R++E+LM N K ++ +IF ++ DE ++E V +IS LR+KL+ Sbjct: 151 AGKESRMMEFLMLNAQKSLSTQEIFRHVWSKDEDEDLDEGFVWIYISYLRQKLK 204 >gi|308187698|ref|YP_003931829.1| transcriptional regulator [Pantoea vagans C9-1] gi|308058208|gb|ADO10380.1| Probable transcriptional regulator [Pantoea vagans C9-1] Length = 226 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 24/216 (11%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 D + L G G+ +G S EF + D+S I+ R +R +S+ Sbjct: 26 DAQLVLTGSAGI--QGALSGEFTAMILDIMLPDMSGIDVL------------RQVRQNSR 71 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128 +P+I ++ + + G DD + KP + RE++AR+ A+ RR + + + Sbjct: 72 IPVIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFEEQVPQPDAKEPL 131 Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + R E QG+ F L E +L+ L+ + V+K ++ G EA + Sbjct: 132 RWGDLTLNPATRMSEWQGKTFDLTASEFNLLDLLLRAPDRVVSKDELSEKGLGRPREAYD 191 Query: 187 ENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSI 220 + V+ HIS +R+KL + L D ++ + R +GY I Sbjct: 192 RS-VDVHISNIRQKL-SALTADSINIETVRSIGYRI 225 >gi|270263749|ref|ZP_06192018.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270042633|gb|EFA15728.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 229 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 52/161 (32%), Positives = 73/161 (45%), Gaps = 20/161 (12%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R S +P+I +S + + + D+G DD ++KP E+LARV RR S Sbjct: 69 RDLRQWSAIPVIVLSARNAEEDKIAALDAGADDYLSKPFGIGELLARVRVALRRHSGSQQ 128 Query: 125 RAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + P+ FS+ R GE L E R+L L+AN GK + + Q+ S ++ Sbjct: 129 ES---PLVSFSEITVDLINRRVLRNGEDLHLTPIEFRLLAELLANSGKVITQRQLLSHVW 185 Query: 179 GLFDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216 G N VE H LR LR KL DP K L Sbjct: 186 G-------PNYVE-HSHYLRIYMGHLRQKLEADPARPKHLL 218 >gi|257877070|ref|ZP_05656723.1| two component transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811236|gb|EEV40056.1| two component transcriptional regulator [Enterococcus casseliflavus EC20] Length = 228 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 76/152 (50%), Gaps = 3/152 (1%) Query: 52 FLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 ++ K + + L + + + + P+I ++ + + D+G DD + KP +E+LAR Sbjct: 52 IMLPKIDGITLLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLAR 111 Query: 112 VAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + ++ RR L ++ G + + + L +E +++E ++ ++ Sbjct: 112 IRSLSRRKDLDYQEDQLAFGNVVLARNELQLATTTNQVVLSPKEMKLMELFLSRPKVILS 171 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 K I + I+G FD VEEN VE ++S LRKKL Sbjct: 172 KETIINKIWG-FDPDVEENRVEIYVSLLRKKL 202 >gi|291294437|ref|YP_003505835.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290469396|gb|ADD26815.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 220 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 3/133 (2%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIR 132 P++ ++ +L + D G DD V KP E+LARV A+ RR+ +V +R + GP+ Sbjct: 76 PILFMTARDALADRVMGLDEGGDDYVVKPFDLPELLARVRALLRRMSEVKQSRVQLGPLE 135 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + R +G + L RE +LE L G+ + ++ I+G +EA + VV+ Sbjct: 136 LDLADRSVRWEGRLVELSGREYALLERLALFPGRVYSPEELLDLIWG--EEASDTGVVKV 193 Query: 193 HISKLRKKLRNKL 205 + LR KL +++ Sbjct: 194 CVHHLRNKLDSRV 206 >gi|225027357|ref|ZP_03716549.1| hypothetical protein EUBHAL_01613 [Eubacterium hallii DSM 3353] gi|224955359|gb|EEG36568.1| hypothetical protein EUBHAL_01613 [Eubacterium hallii DSM 3353] Length = 250 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 3/126 (2%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRR 152 G DD + KP E+ ARV A RR + + A T I++ ++ V L + Sbjct: 124 GADDYLTKPFRIAELRARVNAHLRRERRERHTALTFDRIKIDLSEKELRVDNTPVALTKS 183 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E I EYL N+G+ +K QI+ A++ L ++ + + + +HI +R KL NKL P+ + Sbjct: 184 EYLICEYLARNKGQVFSKEQIYEAVFSLEGDS-DNSTISTHIKNIRSKL-NKLDIQPIAT 241 Query: 213 KRFLGY 218 +GY Sbjct: 242 VWGIGY 247 >gi|145301037|ref|YP_001143878.1| two-component system response regulator CpxR [Aeromonas salmonicida subsp. salmonicida A449] gi|142853809|gb|ABO92130.1| two-component system response regulator CpxR [Aeromonas salmonicida subsp. salmonicida A449] gi|148292091|emb|CAN84664.1| transcriptional regulatory protein CpxR [Aeromonas salmonicida subsp. salmonicida] Length = 231 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 16/154 (10%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NR 125 +R P++ ++ Q ++ ++G DD + KP RE+LAR+ AI RR + + R Sbjct: 67 LRETHDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARIRAILRRTQSAQPQR 126 Query: 126 AETG-PIR----VFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 T IR V G GE + L E +LE L+ N G+ V+K+Q+ + G Sbjct: 127 GGTSEEIRFMDLVLQPGLQQASSGEQLLELTATEFGLLECLLRNPGQIVSKSQLSELVLG 186 Query: 180 L----FDEAVEENVVESHISKLRKKLRNKLGFDP 209 FD A ++ H+S LRKKL + P Sbjct: 187 KKLEPFDRA-----IDMHLSNLRKKLPERTDGQP 215 >gi|47570221|ref|ZP_00240874.1| DNA-binding response regulator [Bacillus cereus G9241] gi|52142938|ref|YP_083891.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228985668|ref|ZP_04145821.1| Sensor histidine kinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229156150|ref|ZP_04284248.1| Sensor histidine kinase [Bacillus cereus ATCC 4342] gi|229196733|ref|ZP_04323476.1| Sensor histidine kinase [Bacillus cereus m1293] gi|301054096|ref|YP_003792307.1| DNA-binding response regulator [Bacillus anthracis CI] gi|47553127|gb|EAL11525.1| DNA-binding response regulator [Bacillus cereus G9241] gi|51976407|gb|AAU17957.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228586808|gb|EEK44883.1| Sensor histidine kinase [Bacillus cereus m1293] gi|228627333|gb|EEK84062.1| Sensor histidine kinase [Bacillus cereus ATCC 4342] gi|228774063|gb|EEM22476.1| Sensor histidine kinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|300376265|gb|ADK05169.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 231 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 13/207 (6%) Query: 27 EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+N + + +E LQ + +V + ++ LE+ + +R ++ VP++ +S Sbjct: 25 EGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135 + +G DD + KP + E++ARV A+ RR N + E G IR+ S Sbjct: 85 DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSQKNEDGMIRIRSAEIHK 144 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 +V GE L E IL L +N G+ + +IF ++ D V HIS Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203 Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221 LR KL + G + + +GY I+ Sbjct: 204 NLRDKLETGMNGEKFIHTVWGVGYKIE 230 >gi|300863556|ref|ZP_07108502.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300338423|emb|CBN53644.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 232 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 21/203 (10%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L ++ YI + +G E E+L+S + AI +L+ G LEL + + Sbjct: 18 RTLNQEKYIVDWAQNGN--------EAWEYLESQWTQYTLAIFDWLL-PGLSGLELCQRL 68 Query: 68 RA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118 RA ++ +P++ ++ ++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 69 RAKNNHLPVLMLTARDRMEDKVAGLDAGADDYLVKPFGMAELLARLRALQRRSPQLQPEQ 128 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L V N + G V+ E Q + L +E ++LEYLM + + V +I + I+ Sbjct: 129 LTVVNLTLDYGTRTVYHFNLKGEKQ--IISLTNKEFQLLEYLMRHPNQIVTSDRIRNQIW 186 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 D NVV + + LR+KL Sbjct: 187 E-ADADAFSNVVAAQMRLLRRKL 208 >gi|229514510|ref|ZP_04403971.1| DNA-binding response regulator [Vibrio cholerae TMA 21] gi|229348490|gb|EEO13448.1| DNA-binding response regulator [Vibrio cholerae TMA 21] Length = 192 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I RA +P++ ++ + + D G D+ + KP E+LAR+ I RR S Sbjct: 37 LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 93 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE G + + ++ + L R E +IL LM G+ ++K + A++ Sbjct: 94 SGSAEELISVGDLDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 153 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +DE +N +E HI LRKKL + L V + R +GY I+ Sbjct: 154 G-WDEGSSDNAIEVHIHNLRKKLPDNL----VKNVRGVGYMIE 191 >gi|223985835|ref|ZP_03635876.1| hypothetical protein HOLDEFILI_03182 [Holdemania filiformis DSM 12042] gi|223962225|gb|EEF66696.1| hypothetical protein HOLDEFILI_03182 [Holdemania filiformis DSM 12042] Length = 223 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 8/134 (5%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAETGPIRVFSDGRDPEVQGEVF 147 F+ GVDD V KP +E++ARV I R K + R E I + +GR V GE Sbjct: 94 FELGVDDYVVKPFSPKELMARVKVILERFKTKDTEVLRFEGLQINI--EGRSVTVDGEKA 151 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L +E +L Y++ N+ +++ ++ ++ +D ++ V++HI LR L++ F Sbjct: 152 NLTPKEIDLLLYMVKNKNIALSRMKLLEEVWD-YDYFGDDRTVDTHIKMLRHNLKDYRKF 210 Query: 208 DPVDSKRFLGYSID 221 + + R +GY + Sbjct: 211 --IVTVRGMGYKFE 222 >gi|256005030|ref|ZP_05430001.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418071|ref|ZP_06249091.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|255990998|gb|EEU01109.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281409473|gb|EFB39731.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316939889|gb|ADU73923.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 239 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 59/114 (51%), Gaps = 5/114 (4%) Query: 94 GVDDVVNKPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 G DD ++KP RE +ARV +RR + S R G I + + R+ ++ + Sbjct: 102 GADDYISKPFSVREFVARVKVAFRRQADSFENSPKRVNVGRITIDFERREVYKDNQIIEM 161 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 +E +L+ L+ NRGK +++ + I+G FD E V+ HI LR+K+ + Sbjct: 162 TFKEFELLKLLIMNRGKVLSRDMLLQKIWG-FDFFGETRTVDVHIRYLRQKIED 214 >gi|187479560|ref|YP_787585.1| phosphate regulon two-component response regulator [Bordetella avium 197N] gi|115424147|emb|CAJ50700.1| phosphate regulon two-component response regulator [Bordetella avium 197N] Length = 232 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 78/150 (52%), Gaps = 7/150 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130 VP+I ++ + Q +D ++G DD + KP +E++AR+ A+ RR +++++ + G Sbjct: 77 VPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRAPQLTDDIIDVGG 136 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENV 189 +++ + + E R+L + M + + +++Q+ ++G D VEE Sbjct: 137 LKLDPVTHRLSGDSQALQIGPTEFRLLHFFMTHPERVFSRSQLLDQVWG--DHVFVEERT 194 Query: 190 VESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 V+ HI +LRK L G D V++ R GY Sbjct: 195 VDVHIRRLRKAL-EPTGHDAHVETVRGSGY 223 >gi|94971486|ref|YP_593534.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553536|gb|ABF43460.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 230 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 12/174 (6%) Query: 35 EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94 E+ LQ + + S + ++ G L++ R +R S++P++ ++ + + G Sbjct: 35 EQGLQKALSGNYSIVVLDIMLPGISGLDVLRRLRPQSRIPVLLLTARGEDVDRIVGLELG 94 Query: 95 VDDVVNKPIHHREILARVAAIYRRLKVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPR 151 DD V KP + RE+LAR+ AI RR++ G + + R + G+ Sbjct: 95 ADDYVPKPFNTRELLARIQAILRRVQGGQTPGAIVNVGDVTLDPGARTVQRGGQKLDFTS 154 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGL----FDEAVEENVVESHISKLRKKL 201 E +L YL+ N G V + ++ + G FD + ++ HISK+R+KL Sbjct: 155 VEFDLLRYLLENAGNVVPREELAERVLGRRFSPFDRS-----IDMHISKIRRKL 203 >gi|17231314|ref|NP_487862.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17132956|dbj|BAB75521.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 242 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 +R S VP+I ++ + + + G DD V KP +E+ AR+ ++ RR+ Sbjct: 71 LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKTGASG 130 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ G I++ ++ R E L E +LE L++ G+ ++++I ++G Sbjct: 131 IPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEVWG 190 Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203 E V+ VV+ HIS+LR KL + Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215 >gi|28896527|ref|NP_802877.1| two-component response regulator (CsrR/CovR) [Streptococcus pyogenes SSI-1] gi|28811781|dbj|BAC64710.1| putative two-component response regulator (CsrR/CovR) [Streptococcus pyogenes SSI-1] Length = 228 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+ R + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFCRQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|154247331|ref|YP_001418289.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161416|gb|ABS68632.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 236 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 16/173 (9%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G L+L R IR S VP+I ++ S + + G DD ++KP + RE+LAR+ A+ Sbjct: 60 GASGLDLCRDIRRTSSVPIIMLTARGSDVDRIVGLELGADDYLSKPFNPRELLARIHAVL 119 Query: 117 RRLKVSNNRAETGPIRVFS----DGRDPEVQGE---VFPLPRRERRILEYLMANRGKRVA 169 RR++ S A G + F+ D R E+ V L E +L + + + + Sbjct: 120 RRMRPSGGAATGGSLLNFAGWTLDTRRRELTNPAAVVVDLSTGEYDLLLTFLEHPQRVLT 179 Query: 170 KTQIFSAIYGL----FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + Q+ A FD A++ V S+LRKKL + G + V + R GY Sbjct: 180 RDQLMDAAKNRTATGFDRAIDIQV-----SRLRKKLESHGGPEMVKTVRGAGY 227 >gi|90423338|ref|YP_531708.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90105352|gb|ABD87389.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB18] Length = 229 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 10/164 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-LARVAAI 115 G VLE R R H +P++ ++ + FD+G DD V KP H E+ A + Sbjct: 59 GISVLEAWR--RNHRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARLRALL 116 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + + GP+ + + V G + E R+L YLM + G+ V++T++ Sbjct: 117 RRSAGHAQSELTCGPVVLDTRTGRVSVNGNPVKMTSHEYRLLAYLMHHSGRVVSRTELVE 176 Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +Y FD + N +E + ++RK KL D + + R LGY Sbjct: 177 HLYDQDFDR--DSNTIEVFVGRIRK----KLDVDIIQTVRGLGY 214 >gi|75762099|ref|ZP_00742004.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490417|gb|EAO53728.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 275 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 8/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 112 ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNE 171 Query: 122 SNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G V+ + + V E L E +L + + +++ Q+ I+GL Sbjct: 172 HKQIQYHGI--VWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL 229 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 + E+ V+SHI LR KLR K F P+D K G W Sbjct: 230 -NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 270 >gi|310827869|ref|YP_003960226.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] gi|308739603|gb|ADO37263.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] Length = 241 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 15/149 (10%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R +P++ ++ S + + +G DD + KP E +ARV ++ RR V N Sbjct: 74 LRKTKSIPVLMLTARDSEKDKVQGLKTGADDYLTKPFSINEFMARVESLIRRFTVLNRE- 132 Query: 127 ETGPIR----VFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 P + +F G R VQ + L +E +L +L N G+ K Q+++ Sbjct: 133 --NPCKEKSLIFKGGLLINPVERSVSVQEKEIELTNKEFDLLYFLAKNPGQVFTKKQLYT 190 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK 204 I+ D A ++ + ++ISKLR+K+ K Sbjct: 191 QIWQ-EDYAFDDGNMMAYISKLRRKIEKK 218 >gi|296503090|ref|YP_003664790.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] gi|296324142|gb|ADH07070.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] Length = 248 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 22/242 (9%) Query: 1 MFVLIDDRALVKDGYIALFGDD-------GVSL--EGFN---SLEFEEWLQSSAREDVSA 48 M ++ +R + I + DD V L EG+N + + +E LQ + +V Sbjct: 7 MLMICKERNYTMNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDL 66 Query: 49 IEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108 + ++ LE+ + +R ++ VP++ +S + +G DD + KP + E+ Sbjct: 67 MILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLEL 126 Query: 109 LARVAAIYRRLKVSN---NRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYL 160 +ARV A+ RR N + E G IR+ S +V GE L E IL L Sbjct: 127 VARVKALLRRSSFQNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLL 186 Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 +N G+ + +IF ++ D V HIS LR KL + G + + +GY Sbjct: 187 ASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYK 245 Query: 220 ID 221 I+ Sbjct: 246 IE 247 >gi|289577696|ref|YP_003476323.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|297544009|ref|YP_003676311.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527409|gb|ADD01761.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|296841784|gb|ADH60300.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 225 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 5/143 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LK 120 R IR S +P+I ++ + + G DD + KP + RE++AR+ A+ RR Sbjct: 65 REIRTFSNIPIIMLTARGEDVDRIVGIEIGADDYLAKPFNTRELIARIRALLRRATNPYT 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G + + R +G+ L +E IL L +N GK K ++ ++G Sbjct: 125 KKKDEIKRGELYISIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLVWG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRN 203 FD + N V H+ KLR+K+ + Sbjct: 184 FDFYGDTNTVTVHVRKLREKIED 206 >gi|228930116|ref|ZP_04093126.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936367|ref|ZP_04099165.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823199|gb|EEM69033.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829615|gb|EEM75242.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 222 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 7/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++D S + + +G DD + KP E++ARV AI RR Sbjct: 59 EICRQIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 117 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + ET + +F D V+ G+ L +RE +L +L+ N+ +++ + + Sbjct: 118 CNQQHETTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + V NVV+ +I +RKKL+ + + + GYS+ Sbjct: 178 VWG-HNVVVNPNVVDLYIGYIRKKLKCEKKNRYIQTIHGRGYSM 220 >gi|218710599|ref|YP_002418220.1| putative response regulator [Vibrio splendidus LGP32] gi|218323618|emb|CAV19887.1| putative response regulator [Vibrio splendidus LGP32] Length = 244 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 10/154 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ L L + +R SQVP+I ++ + + G DD + K + RE+LAR+ A+ Sbjct: 67 GDDGLTLCQKLRLQSQVPIIMLTAVTDDADRIAGLEIGADDYITKSFNPRELLARIKALL 126 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQ-------GEVFPLPRRERRILEYLMANRGKRVA 169 RR S+++ E F D ++ GEV L + +L ++ + + ++ Sbjct: 127 RRSTFSHSQGERTL--KFMDWTFDTLKRQLKHEDGEVVSLSSADYNLLTLMLDSPNQLLS 184 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + I A++G E +E ++ IS+LRK+LR+ Sbjct: 185 RNDIAQALWGRDAEPLERG-IDVQISRLRKQLRD 217 >gi|24215807|ref|NP_713288.1| response regulator containing a signal receiver domain and a DNA/RNA polymerase-binding domain [Leptospira interrogans serovar Lai str. 56601] gi|45656882|ref|YP_000968.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24196997|gb|AAN50306.1| response regulator containing a signal receiver domain and a DNA/RNA polymerase-binding domain [Leptospira interrogans serovar Lai str. 56601] gi|45600118|gb|AAS69605.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 227 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 13/144 (9%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR+ S+ P+I +S S + D G DD + KP E+LAR+ R+ + N Sbjct: 66 REIRSWSETPVIVLSVLASDPEKISLLDGGADDYITKPFSMGELLARI-----RVALRNK 120 Query: 125 RAETG-PIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G PI + + R+ +V G L E L +L+ + GK + + QI + Sbjct: 121 TQDPGSPIFISGNLYVDLSNRNVKVSGITVHLTPTEYIFLTFLIQHAGKVLTQEQIIRHV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G F + E + H++ LRKK+ Sbjct: 181 WGPFAKN-ESGSLRVHVASLRKKI 203 >gi|15614371|ref|NP_242674.1| two-component response regulator [Bacillus halodurans C-125] gi|10174426|dbj|BAB05527.1| two-component response regulator [Bacillus halodurans C-125] Length = 231 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 72/152 (47%), Gaps = 14/152 (9%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +P+I +S S + G DD + KP E++ARV A RR K Sbjct: 64 EVARQIREQHNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFAPIELVARVNAQLRRFKK 123 Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ-I 173 N E G + + + R + GE L +E IL YL+A+ K+V + I Sbjct: 124 LNQPKPDRITTLEFGGLVIAPEQRKVTLYGETIELTPKEFEIL-YLLASHPKKVYSVENI 182 Query: 174 FSAIYGLFDEAVEE--NVVESHISKLRKKLRN 203 F ++G EA E N V H+ LRKKL++ Sbjct: 183 FHQVWG---EAYFEGGNTVMVHVRTLRKKLKD 211 >gi|308084098|gb|ADO13165.1| QseB [Edwardsiella tarda ATCC 15947] Length = 219 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 23/210 (10%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEK 59 +LI+D L+ DG A G+S GF F + Q A D + +A ++ G Sbjct: 4 LLIEDDRLIGDGIKA-----GLSKMGFTLDWFSDGNQGLAALDAAPYDAVILDLSLPGID 58 Query: 60 VLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ R R H++ P++ ++ +L+ + G DD + KP E+ AR+ A+ R Sbjct: 59 GLEILRRWREAGHAE-PVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIR 117 Query: 118 R------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R ++S+ P+ + + + G L +E +LE L+ N G+ + ++ Sbjct: 118 RNHGQTQTQLSHGAVTLDPLSLTA-----TLDGAPLLLKPKEFALLELLLRNAGRVLPRS 172 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 I +Y ++ V N VE HI LR+KL Sbjct: 173 LIEEKLYN-WEGDVSSNAVEVHIHHLRRKL 201 >gi|297154563|gb|ADI04275.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 226 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 13/206 (6%) Query: 23 GVSLEGFNSLEFEE------WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPL 75 G++ EG+ S++ W+ + + ++ L G G KV R R ++ P+ Sbjct: 19 GLTAEGY-SVDLAHDGRQGLWMARTGEYVLIVLDLMLPGLNGYKVCAQLR--RENNATPI 75 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVF 134 + ++ + D+G DD + KP + ++AR+ A+ RR V+ G + + Sbjct: 76 LVLTAKDGEWDQAEALDTGADDYLAKPFSYVVLVARLRALVRRAATVAPPVLAVGDLSLD 135 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 GR G L RE +LE L G+ V+KT + + DEA + N+VE+ + Sbjct: 136 VAGRVCRRAGARVELTPREFAVLELLARRAGQAVSKTDLL--YHAWPDEAWDPNLVEARV 193 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSI 220 S LRKK+ + + R GY + Sbjct: 194 SALRKKVDAAFHRQSLQTVRGTGYRL 219 >gi|293399743|ref|ZP_06643889.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306143|gb|EFE47386.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 224 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 83/164 (50%), Gaps = 7/164 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ + +RA+ QVP++ ++ S+Q + D+G DD + KP E+LAR+ + R Sbjct: 60 LEVLQTLRANGKQVPVLMLTAKDSIQDRVKGLDAGADDYLVKPFAFDELLARIRVLLR-- 117 Query: 120 KVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K SN + + ++ + + L +E +L Y+M N G +++ ++ Sbjct: 118 KPSNRHTGFYQVDDLVLYPNTHKVLRADKEIHLSAKEFSLLRYMMQNTGIVLSREKLEQH 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+ +D + E NV++ +I LRKK+ + + R +GY + Sbjct: 178 IWN-YDYSGESNVIDVYIRYLRKKIDEGHSHKLLHTIRGVGYVL 220 >gi|262403145|ref|ZP_06079705.1| DNA-binding response regulator [Vibrio sp. RC586] gi|262350644|gb|EEY99777.1| DNA-binding response regulator [Vibrio sp. RC586] Length = 218 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I RA +P++ ++ + + D G D+ + KP E+LAR+ I RR S Sbjct: 63 LRQIRRAGYSLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 119 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 AE G + + ++ + L R E +IL LM G+ ++K + A++ Sbjct: 120 TGSAEALISAGELNLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +DE +N +E HI LRKKL + L + + R +GY I+ Sbjct: 180 G-WDEGSSDNAIEVHIHNLRKKLPDNL----IRNVRGVGYMIE 217 >gi|229030407|ref|ZP_04186448.1| Two-component response regulator vanRB [Bacillus cereus AH1271] gi|228730932|gb|EEL81871.1| Two-component response regulator vanRB [Bacillus cereus AH1271] Length = 143 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 7/133 (5%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFP 148 FD G+DD + KP ++ RV A+ RR K NN +R+ D V Sbjct: 15 FDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNVNNHLVFKEVRIDVDAYRIYVNDVEIL 74 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L +E IL+ L N K + + I ++G +D E ++++HI LRK KL Sbjct: 75 LTTKEFEILQLLFQNERKVLTRENIVEKVWG-YDYFGETRIIDTHIKNLRK----KLAIP 129 Query: 209 PVDSKRFLGYSID 221 + + + +GY +D Sbjct: 130 YIKTIKGIGYKVD 142 >gi|170721590|ref|YP_001749278.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169759593|gb|ACA72909.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 226 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 5/151 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGP 130 P++ IS + + +G DD + KP E+ ARV + RR + ++ R + Sbjct: 74 TPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSVPMTQTRLQVAD 133 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189 +++ + + L E ++LEYLM + G+ + + IF ++G FD N+ Sbjct: 134 LQLDLISHEARRGDQTLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWGYHFDPGT--NL 191 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ HI +LRKK+ + + + R GY+I Sbjct: 192 IDVHIGRLRKKIDSPGQSPLIRTVRGSGYAI 222 >gi|82750361|ref|YP_416102.1| two-component response regulator [Staphylococcus aureus RF122] gi|123547752|sp|Q2YSS2|GRAR_STAAB RecName: Full=Response regulator protein graR; AltName: Full=Glycopeptide resistance-associated protein R gi|82655892|emb|CAI80296.1| two-component response regulator [Staphylococcus aureus RF122] gi|298693989|gb|ADI97211.1| two-component response regulator [Staphylococcus aureus subsp. aureus ED133] gi|302332368|gb|ADL22561.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JKD6159] gi|323439125|gb|EGA96854.1| two-component response regulator [Staphylococcus aureus O11] gi|323441886|gb|EGA99525.1| two-component response regulator [Staphylococcus aureus O46] Length = 224 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 7/159 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KV 121 R +R S VP++ +S + + + G DD + KP + ++A++ AIYRR+ Sbjct: 64 RKMREVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTA 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R T + +D +G + L + E ILE L+ + + V++ I +A++ Sbjct: 124 EEKRTLTWQDAIIDLSKDSIQKGDDTIFLSKTEMIILEILITKKNQIVSRDTIITALWD- 182 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DEA V +N + ++++LRKKL +++K GY Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGY 220 >gi|221310852|ref|ZP_03592699.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221315178|ref|ZP_03596983.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320095|ref|ZP_03601389.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221324377|ref|ZP_03605671.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|255767672|ref|NP_390789.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|251757501|sp|P13792|PHOP_BACSU RecName: Full=Alkaline phosphatase synthesis transcriptional regulatory protein phoP gi|40056|emb|CAA47908.1| phoP [Bacillus subtilis] gi|225185300|emb|CAB14871.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291485344|dbj|BAI86419.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] Length = 240 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 15/141 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-----------GPIRVFSDGRDPEV 142 G DD + KP RE+ ARV AI RR +++ +E G +++ D + Sbjct: 96 GADDYMTKPFSPREVNARVKAILRRSEIAAPSSEMKNDEMEGQIVIGDLKILPDHYEAYF 155 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + L +E +L YL ++G+ + + + SA++ +D A + +V+ HIS LR K+ Sbjct: 156 KESQLELTPKEFELLLYLGRHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIE 214 Query: 203 NKLGFDPVDSK--RFLGYSID 221 N P+ K R LGY ++ Sbjct: 215 NNTK-KPIYIKTIRGLGYKLE 234 >gi|311106506|ref|YP_003979359.1| response regulator 10 [Achromobacter xylosoxidans A8] gi|310761195|gb|ADP16644.1| response regulator 10 [Achromobacter xylosoxidans A8] Length = 233 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 19/182 (10%) Query: 48 AIEAF-----------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 A+EAF L+ G L++ R +RA S P++ ++ + +SG D Sbjct: 37 AVEAFRRHDPAITILDLMLPGRDGLQVCRDLRAFSSAPILMLTAREDDLDQILGLESGAD 96 Query: 97 DVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153 D V KP+ R +LAR+ A+ RR L R E GP+ + R G L E Sbjct: 97 DYVIKPVEPRVLLARIRALLRRHSQLDEPPERLEFGPLVIDRRTRAVVHAGSEVDLTTME 156 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +L L + G+ + + + +A+ G +E N ++ + KLR KL DP D Sbjct: 157 FEMLWALASQAGQVLTRDDLLNAVRG-----IEFNGLDRSVDVCVSKLRRKLDDDPRDPA 211 Query: 214 RF 215 R Sbjct: 212 RI 213 >gi|309777246|ref|ZP_07672209.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308915116|gb|EFP60893.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 226 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 3/131 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 ++P+I I+ S+Q + G DD + KP E+LARV + RR S + Sbjct: 75 EIPVIFITAKGSVQERVKGLRMGADDYLVKPFAIDELLARVDNVLRRYHKSMQEIHVLDV 134 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN-VV 190 + + R + +G V PL ++E +L YL+ N+ + + ++ ++ +E E+ + Sbjct: 135 TIHTATRVVKKKGTVIPLTKKEFDLLLYLVQNKNIALYRDTMYEKLWR--EEDYEQTRTL 192 Query: 191 ESHISKLRKKL 201 + HI +LRKKL Sbjct: 193 DLHIQRLRKKL 203 >gi|302380400|ref|ZP_07268869.1| response regulator receiver domain protein [Finegoldia magna ACS-171-V-Col3] gi|302311804|gb|EFK93816.1| response regulator receiver domain protein [Finegoldia magna ACS-171-V-Col3] Length = 218 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/228 (19%), Positives = 100/228 (43%), Gaps = 22/228 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G + G ++ + ++ +S E I + Sbjct: 3 LLVVEDDQMIREGICEFLSEFG----------YKNYQAEDGKQAISIFENNEINLAILDI 52 Query: 62 ELPRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 +LP I IR S +P I ++ + + ++ F S D + KP + RV Sbjct: 53 QLPYINGLDVLKKIRETSDIPAIMLTAFSDEEYKINAFTSLADGYIEKPFSLPVLKVRVE 112 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ ++ +N V ++ G+ + +E IL+Y++ N G+ + + QI Sbjct: 113 SLIKKHYGNNETFNYKNTEVNFTSYTAKLNGKKVDVNAKELEILKYMIENEGQALTRMQI 172 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++ DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 173 IDSVWKETDEIPFDRVIDVYIKELRKKLE----LDCIVTIRNVGYKLE 216 >gi|255523524|ref|ZP_05390492.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255512781|gb|EET89053.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 232 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 13/207 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + D + DG E F + E + L++ R + I L+ E Sbjct: 8 LVIDDENKIVDVIRSYLERDGA--EVFEAFEGKNALETFERVNPDLIILDLMLPDMTGEE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S+VP+I ++ ++ + G DD V KP RE++AR+ A+ RR VS Sbjct: 66 ICKAIRKKSRVPIIMLTAKIDEKSVISGLHIGADDYVTKPFSPRELMARIFALLRR--VS 123 Query: 123 NNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 I ++G R+ +GE L E ++L L+ K + ++ Sbjct: 124 EEAVPLSDIVSLNNGDLVVDVLKREVRKKGENINLTITEYKVLMALLKYPQKTFTREELI 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 +A+ G D + V+++H+ LR+KL Sbjct: 184 NAVLG-EDYDGYDRVIDTHVKNLRQKL 209 >gi|193213480|ref|YP_001999433.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] gi|193086957|gb|ACF12233.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] Length = 220 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 15/171 (8%) Query: 57 GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G LEL +R S +P+I I+ L + DSG DD + KP E+LAR+ A+ Sbjct: 56 GRGGLELLAGLRQQGSSIPVIIITARDGLSERIAGLDSGADDYLVKPFDLDELLARLRAV 115 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAK 170 RR +G I DP L RE +L L+ G+ +++ Sbjct: 116 IRR----QGGQASGLIGNGQITLDPATHTAFCGESREVLSSREFAVLHALLLQPGRILSR 171 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + +YG +DE VE N ++ I +LRK KLG + + R G+ ++ Sbjct: 172 SALEERVYG-WDEEVESNAIDYLIHQLRK----KLGAASIKNIRGAGWMVE 217 >gi|6689352|emb|CAB65451.1| VicR protein [Streptococcus pyogenes] Length = 239 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 64 LEVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 123 Query: 121 -----VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 V+ A +G +++ D + G+ L RE +L +L + G+ + Sbjct: 124 TIETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVM 183 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ + +LR+K+ + Sbjct: 184 TREHLLEIVWG-YDYFGDVRTVDVTVRRLREKIED 217 >gi|15673729|ref|NP_267903.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|12724767|gb|AAK05845.1|AE006404_12 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|326407232|gb|ADZ64303.1| two-component system response regulator [Lactococcus lactis subsp. lactis CV56] Length = 223 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 17/164 (10%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118 +R SQ+P+I IS + + G DD V KP + A++ A+ RR Sbjct: 66 LRKLSQIPIIFISSASDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIE 125 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 L+ + + +G E++ L E +IL L G+ V K +I + Sbjct: 126 KLEFAGYVLSENTLISTQEGEREEIE-----LTSSENKILTLLFRGNGEVVTKEKILQEL 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + DE ++ N + +++LRKKL ++GFD + +KR GY++ Sbjct: 181 WQT-DEFIDANTLNVKMTRLRKKL-GEIGFDKHIMTKRGSGYAL 222 >gi|148548249|ref|YP_001268351.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148512307|gb|ABQ79167.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 220 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 15/167 (8%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +EL R +RA +P++ ++ +L + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 IELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRR- 118 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S RA+ I DP Q G L +E +L L+A+ GK + ++ Sbjct: 119 --SVGRAKV-LIEHAGVSLDPTTQQVHYNGVDVVLTPKEYVLLHELLAHPGKVFTRERLT 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +YG +DE E N +E +I LRKKL N L + + R +GY ++ Sbjct: 176 QLLYG-WDEEPESNTLEVNIYHLRKKLFNGL----IRTVRGIGYLVE 217 >gi|116629368|ref|YP_814540.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323] gi|282850958|ref|ZP_06260332.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|311110978|ref|ZP_07712375.1| DNA-binding response regulator DltR [Lactobacillus gasseri MV-22] gi|116094950|gb|ABJ60102.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus gasseri ATCC 33323] gi|282557910|gb|EFB63498.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|311066132|gb|EFQ46472.1| DNA-binding response regulator DltR [Lactobacillus gasseri MV-22] Length = 221 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 DSG DD + KP +E+LAR+ + RR + + N E G + + V L Sbjct: 91 LDSGADDYLTKPFSLKELLARLRSKERRDDQYTPNEVEVGDL-ALNVSEQELVSHNSIRL 149 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 +E ++L YLM N GK + + + + ++ D+A EE VV +IS LR+KL++ Sbjct: 150 GSKETQLLNYLMLNEGKEFSTSDLLAHVWKDEDDANEE-VVWIYISYLRQKLQS 202 >gi|314934896|ref|ZP_07842255.1| DNA-binding response regulator KdpE [Staphylococcus caprae C87] gi|313652826|gb|EFS16589.1| DNA-binding response regulator KdpE [Staphylococcus caprae C87] Length = 233 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 4/146 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA---IYR 117 L L + +R P+I IS +T + D G +D + KP + E+ AR+ + + Sbjct: 62 LSLIKRLRECVDTPIIVISARTEEETIVKALDYGANDYMTKPFNIDELQARIRVALRVSK 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R N E GP+ + G + G+ L E ++LE L + GK + + A+ Sbjct: 122 RPDTMQNNFENGPLIIDFSGNSVYMMGQAIHLTPYEFQLLEILSQHVGKVLTYQVLLKAL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN 203 +G ++ + + + H++ LRKKL N Sbjct: 182 FGYVNKC-DMSSLRVHMASLRKKLNN 206 >gi|308397855|ref|ZP_07492623.2| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu012] gi|308366785|gb|EFP55636.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu012] Length = 228 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 10/147 (6%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R +P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR Sbjct: 60 LEVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQI 173 K + AE+ +R FSD V EV L R E +LE L+AN + + +++I Sbjct: 120 K-PEDAAESMAMR-FSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRI 177 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK 200 ++G FD N +E ++ LR+K Sbjct: 178 LEEVWG-FDFPTSGNALEVYVGYLRRK 203 >gi|307149957|ref|YP_003885341.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306980185|gb|ADN12066.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 242 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR++ Sbjct: 71 LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKNGAPG 130 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ G I++ ++ R E L E +LE L++ G+ ++++I ++G Sbjct: 131 IPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 190 Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203 E V+ VV+ HIS+LR KL + Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215 >gi|282898472|ref|ZP_06306462.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281196638|gb|EFA71544.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 242 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 71/145 (48%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S VP+I ++ + + + G DD V KP +E+ AR+ ++ RR+ + Sbjct: 71 LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGTTG 130 Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 G I++ ++ R E L E +LE L++ G+ ++++I ++G Sbjct: 131 IPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEVWG 190 Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203 E V+ VV+ HIS+LR KL + Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215 >gi|260596190|ref|YP_003208761.1| DNA-binding transcriptional regulator BasR [Cronobacter turicensis z3032] gi|260215367|emb|CBA27379.1| Transcriptional regulatory protein pmrA [Cronobacter turicensis z3032] Length = 220 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++++D L+++G G++G +L+ N+ E + LQS + G + Sbjct: 3 LLIVEDDLLLQEGLALALGNEGYALDCAANATEGDALLQSGEYSLIILDLGLPDKDGATL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R R+ P++ ++ +L+ + D+G DD + KP E+ AR A+ RR + Sbjct: 63 LSQWR--RSGVTTPVLILTARDALEDRVSGLDAGADDYLVKPFALAELHARARALIRRYQ 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+N + I + + +QG + +E +L LM G+ V + + IY Sbjct: 121 GHSDNLLQHDDITLNLQTQQVLLQGLPVEVTPKEFALLTRLMMRIGQTVHRETLQQDIYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D+ N +E HI LR+ KLG + + R +GY ++ Sbjct: 181 WQDDP-SSNTLEVHIHNLRR----KLGKTRIRTIRGVGYRLE 217 >gi|255321627|ref|ZP_05362784.1| transcriptional activator protein CopR [Campylobacter showae RM3277] gi|255301275|gb|EET80535.1| transcriptional activator protein CopR [Campylobacter showae RM3277] Length = 220 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 96/219 (43%), Gaps = 9/219 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ + A G G S + L + D+ + +IG G Sbjct: 5 LIVEDENMLLEMMCAYLRAQGYETAGAKSYDDALNLAYESNFDLWIFDVKIIG-GSGFAL 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + A P I + +L F SG DD + KP +E+ RV + +R V Sbjct: 64 LGELRNAGKNTPCIFTTSLNTLDDVQTSFTSGCDDYIKKPFELKELHLRVQNLLKRTFVH 123 Query: 123 NNRA--ETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N G F + G+ +P+++ R+L L+ N+ K +++ +I+S I+ Sbjct: 124 NKNELINLGENLGFDMNQGLLFCGGKAVSMPKKQSRLLALLLKNQDKFLSREEIYSQIWD 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +DE+ E + +I++LRK LG + + S LGY Sbjct: 184 -YDESPSELSLRVYIAELRK----ILGKERIVSASKLGY 217 >gi|212637675|ref|YP_002314200.1| transcriptional regulatory protein [Shewanella piezotolerans WP3] gi|212559159|gb|ACJ31613.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 225 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 6/164 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+L +RA SQ P++ +S + + +G DD + KP E+L R + +R Sbjct: 60 LKLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRG 119 Query: 120 KVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + GP+ + R + G+ L +E ++L+YLM + + +++T +F A+ Sbjct: 120 ESQPMVTDLSVGPLSIELLTRKVTLDGQEILLQPKEFQLLKYLMEHENQVISRTLLFEAV 179 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + FD NV++ HI+KLR+K + +++ R GY + Sbjct: 180 WDYHFDP--RTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221 >gi|166364957|ref|YP_001657230.1| OmpR family two-component response regulator [Microcystis aeruginosa NIES-843] gi|166087330|dbj|BAG02038.1| two-component response regulator OmpR subfamily [Microcystis aeruginosa NIES-843] Length = 246 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR++ Sbjct: 75 LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKNGVPG 134 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ G I++ ++ R E L E +LE L++ G+ ++++I ++G Sbjct: 135 IPSSGVIHIGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEVWG 194 Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203 E V+ VV+ HIS+LR KL + Sbjct: 195 YTPERHVDTRVVDVHISRLRAKLED 219 >gi|84622759|ref|YP_450131.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188578201|ref|YP_001915130.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|84366699|dbj|BAE67857.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522653|gb|ACD60598.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 225 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 5/167 (2%) Query: 57 GEKVLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G +E+ R +R A Q P++ ++ SL L FDSG DD + KP +E+ R+ A Sbjct: 56 GMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQEVEVRLNA 115 Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR K + R ETG + D + +G++ L +IL+ LM V + ++ Sbjct: 116 LSRRGKGVHTRVLETGDLEYNLDTLEVRRRGKLLQLNPTALKILQALMEASPAVVTRQEL 175 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G +E + + + HI LR + + ++ +GY I Sbjct: 176 ETRVWG--EELPDSDSLRVHIHGLRAVVDKPFDVAMIQTRHGIGYRI 220 >gi|315453463|ref|YP_004073733.1| two-component regulator [Helicobacter felis ATCC 49179] gi|315132515|emb|CBY83143.1| two-component regulator [Helicobacter felis ATCC 49179] Length = 226 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 14/205 (6%) Query: 19 FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGI 78 G+ G ++ +LE E+ S D+ + + G + +P H + I + Sbjct: 20 LGEKGFQVDTAENLEDGEYYISIRNYDLILV-GLELSDGSGLNLIPYAKSKHPTIVSIML 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI-----RV 133 ++ S + + F GVDD + KP + AR+ A R S E I ++ Sbjct: 79 TNKASSEQEIKAFKEGVDDFIVKPFDFGVLAARIEARLRFWGSSIIEIEDLVINPDEEKI 138 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 G++ EV+G+ F +L +L +R + V+K Q+ AI+ E V NV+E Sbjct: 139 IYKGKEIEVKGKPF-------EVLTHLARHRDQIVSKEQLLDAIWEE-PELVTPNVIEVA 190 Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGY 218 I+++R+K+ LG V++ R GY Sbjct: 191 INQIRQKMDKPLGISTVETVRRRGY 215 >gi|239815964|ref|YP_002944874.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239802541|gb|ACS19608.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 242 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 24/215 (11%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L +GY DG + G LE W A+ L+ G LE+ R RA Sbjct: 24 LRDEGYAIEHAADGHT--GLRELERGHW---------DALVLDLMLPGVDGLEICRRARA 72 Query: 70 HSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRA 126 ++ P+I IS S + + G DD + KP E++ARV A+ RR N R Sbjct: 73 MARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRTDALARNARL 132 Query: 127 ETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 E+G + + + DP V + L RE +L + + GK ++ + + ++G + Sbjct: 133 ESGSLTLGNLDIDPVAREVRVDARLIELTPREFDLLYFFARHPGKVFSRLDLLNQVWG-Y 191 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 E+ V +HI++LR K+ DP + +R L Sbjct: 192 QHDGYEHTVNTHINRLRTKVEA----DPAEPRRIL 222 >gi|187929100|ref|YP_001899587.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12J] gi|241663308|ref|YP_002981668.1| two component transcriptional regulator PhoB [Ralstonia pickettii 12D] gi|309782477|ref|ZP_07677201.1| phosphate regulon transcriptional regulatory protein PhoB [Ralstonia sp. 5_7_47FAA] gi|187725990|gb|ACD27155.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|240865335|gb|ACS62996.1| two component transcriptional regulator PhoB, winged helix family [Ralstonia pickettii 12D] gi|308918814|gb|EFP64487.1| phosphate regulon transcriptional regulatory protein PhoB [Ralstonia sp. 5_7_47FAA] Length = 237 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 11/161 (6%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-------VSNN 124 Q+P+I ++ Q + DSG DD V KP +E+LAR+ A+ RR V+ N Sbjct: 76 QIPIIMLTARSEEQDKIMGLDSGADDYVTKPFSPKELLARIKAVLRRRAPQLTDDVVAIN 135 Query: 125 RAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + P + E + + L E R+L +LM + + +++Q+ ++G D Sbjct: 136 GLKLDPATHRVTATNVEAENPIKLDLGPTEFRLLHFLMTHPERVHSRSQLLDQVWG--DH 193 Query: 184 A-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 VEE V+ HI +LR L + +++ R GY + N Sbjct: 194 VFVEERTVDVHIKRLRAALAPGGYSNMIETVRGSGYRLARN 234 >gi|15608121|ref|NP_215496.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis H37Rv] gi|15840406|ref|NP_335443.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|148660762|ref|YP_001282285.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis H37Ra] gi|148822190|ref|YP_001286944.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis F11] gi|167968048|ref|ZP_02550325.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis H37Ra] gi|215402797|ref|ZP_03414978.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|215410580|ref|ZP_03419388.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 94_M4241A] gi|215445129|ref|ZP_03431881.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|218752651|ref|ZP_03531447.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis GM 1503] gi|253799991|ref|YP_003032992.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 1435] gi|254363900|ref|ZP_04979946.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis str. Haarlem] gi|254549965|ref|ZP_05140412.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289555237|ref|ZP_06444447.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 605] gi|289744717|ref|ZP_06504095.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|289757064|ref|ZP_06516442.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|289761115|ref|ZP_06520493.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis GM 1503] gi|294996473|ref|ZP_06802164.1| persistence regulator MprA [Mycobacterium tuberculosis 210] gi|297633506|ref|ZP_06951286.1| persistence regulator MprA [Mycobacterium tuberculosis KZN 4207] gi|297730491|ref|ZP_06959609.1| persistence regulator MprA [Mycobacterium tuberculosis KZN R506] gi|298524475|ref|ZP_07011884.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis 94_M4241A] gi|306775116|ref|ZP_07413453.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu001] gi|306781969|ref|ZP_07420306.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu002] gi|306783676|ref|ZP_07421998.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu003] gi|306788030|ref|ZP_07426352.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu004] gi|306792364|ref|ZP_07430666.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu005] gi|306796766|ref|ZP_07435068.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu006] gi|306802653|ref|ZP_07439321.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu008] gi|306806833|ref|ZP_07443501.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu007] gi|306967031|ref|ZP_07479692.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu009] gi|306971221|ref|ZP_07483882.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu010] gi|307078952|ref|ZP_07488122.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu011] gi|313657820|ref|ZP_07814700.1| persistence regulator MprA [Mycobacterium tuberculosis KZN V2475] gi|81816332|sp|O53894|MPRA_MYCTU RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012482|sp|A5U123|MPRA_MYCTA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|2916942|emb|CAA17580.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|13880575|gb|AAK45257.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|134149414|gb|EBA41459.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis str. Haarlem] gi|148504914|gb|ABQ72723.1| mycobacterial persistence regulator MrpA [Mycobacterium tuberculosis H37Ra] gi|148720717|gb|ABR05342.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis F11] gi|253321494|gb|ACT26097.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 1435] gi|289439869|gb|EFD22362.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 605] gi|289685245|gb|EFD52733.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|289708621|gb|EFD72637.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis GM 1503] gi|289712628|gb|EFD76640.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|298494269|gb|EFI29563.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis 94_M4241A] gi|308216323|gb|EFO75722.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu001] gi|308325360|gb|EFP14211.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu002] gi|308331519|gb|EFP20370.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu003] gi|308335324|gb|EFP24175.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu004] gi|308339132|gb|EFP27983.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu005] gi|308342803|gb|EFP31654.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu006] gi|308346656|gb|EFP35507.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu007] gi|308350571|gb|EFP39422.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu008] gi|308355261|gb|EFP44112.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu009] gi|308359215|gb|EFP48066.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu010] gi|308363126|gb|EFP51977.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu011] gi|323720547|gb|EGB29628.1| myco persistence regulator mprA [Mycobacterium tuberculosis CDC1551A] gi|326904793|gb|EGE51726.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis W-148] gi|328459733|gb|AEB05156.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 4207] Length = 230 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 10/147 (6%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R +P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR Sbjct: 62 LEVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQI 173 K + AE+ +R FSD V EV L R E +LE L+AN + + +++I Sbjct: 122 K-PEDAAESMAMR-FSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRI 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK 200 ++G FD N +E ++ LR+K Sbjct: 180 LEEVWG-FDFPTSGNALEVYVGYLRRK 205 >gi|310643634|ref|YP_003948392.1| alkaline phosphatase synthesis transcriptional regulatory protein phop [Paenibacillus polymyxa SC2] gi|309248584|gb|ADO58151.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa SC2] Length = 231 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 78/162 (48%), Gaps = 11/162 (6%) Query: 49 IEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108 I L+ G+ EL IR + VP++ IS+ L T + D G DD + KP RE+ Sbjct: 50 IVTALMFSGKVECELISHIRQFTTVPVLVISNNTLLNTRIKALDDGADDFLCKPFSLREL 109 Query: 109 LARVAAIYRRLKVSNNRAETGPI-------RVF-SDGRDP-EVQGEVFPLPRRERRILEY 159 AR+ A+ RR SN ET I RV+ +D R V + + E I++ Sbjct: 110 NARIKALLRR-SGSNMLTETPTITQKLKKVRVWVNDYRHSLLVDDQEIEVTHIEFSIIKE 168 Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + N GK ++++ + G D A + ++ HIS LRKK+ Sbjct: 169 MSCNPGKVFTRSELMDRVKG-GDGAYLDRTIDVHISSLRKKI 209 >gi|156933326|ref|YP_001437242.1| DNA-binding transcriptional regulator BaeR [Cronobacter sakazakii ATCC BAA-894] gi|156531580|gb|ABU76406.1| hypothetical protein ESA_01139 [Cronobacter sakazakii ATCC BAA-894] Length = 240 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 6/153 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S+VP++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSEVPIVMVTARIEEIDRLLGLEIGADDYICKPFSPREVVARV 121 Query: 113 AAIYRRLKVSNN---RAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K + + P+ + +GR + + L E R+L+ L GK Sbjct: 122 KTILRRCKPQRDLQAQDAQSPL-IIDEGRFQASWRQKPLDLTPAEFRLLKTLSGEPGKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ Q+ + +Y + V + ++SHI LR+KL Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212 >gi|152980160|ref|YP_001353976.1| phosphate regulon two-component response regulator [Janthinobacterium sp. Marseille] gi|151280237|gb|ABR88647.1| phosphate regulon two-component response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 83/167 (49%), Gaps = 7/167 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G ++L R R +++P+I ++ + + D+G DD V KP RE+ AR+ A+ Sbjct: 64 GLRLLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALL 123 Query: 117 RRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR +++ G I + + E + E ++L++ +A+ + +++Q+ Sbjct: 124 RRKTPEHSQTLMTAGNISLDPVSCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRSQLL 183 Query: 175 SAIYGLFDEAV-EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V EE V+ H+ +LRK L++ + + R +GY + Sbjct: 184 DKVWG--DHVVIEERTVDVHVLRLRKALKDAEHL--IKTVRSVGYML 226 >gi|126740090|ref|ZP_01755780.1| probable two-component response regulator [Roseobacter sp. SK209-2-6] gi|126718909|gb|EBA15621.1| probable two-component response regulator [Roseobacter sp. SK209-2-6] Length = 242 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 107/238 (44%), Gaps = 23/238 (9%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KG 57 + ++DD V+D AL D GF ++ + A D + LI +G Sbjct: 9 LIAIVDDDENVRDTLSALVRD-----SGFGAVCCPDIASFMALGDPPQVNLALIDLRLRG 63 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E L L IR ++P++ ++ + ++G DD + KP + RE++AR+ A+ R Sbjct: 64 ESGLTLAIHIRERYEIPIVMLTGVGDEIDKIIGLETGADDYLIKPFNPRELVARIRAVLR 123 Query: 118 RLKVSNNRA--ETGPIRVFSDGRDPEVQ--------GEVFPLPRRERRILEYLMANRGKR 167 R + + +GP F D R +VQ GE PL E R+LEY + N + Sbjct: 124 RYGHGSAKPGIASGPGISFRDMR-VDVQSRRLLDADGEEVPLTNAEYRLLEYFVRNPNRV 182 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSIDWN 223 + + ++ + + + V+ ++ I +LR+K+ + PV ++R GY D Sbjct: 183 IPRPELLTELGSDMERYVDRT-IDVLILRLRRKI-ELVPSKPVHLLTRRTQGYIFDLG 238 >gi|119511035|ref|ZP_01630155.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] gi|119464286|gb|EAW45203.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] Length = 242 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 +R S VP+I ++ + + + G DD V KP +E+ AR+ ++ RR+ Sbjct: 71 LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKTGASG 130 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ G I++ ++ R E L E +LE L++ G+ ++++I ++G Sbjct: 131 IPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEVWG 190 Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203 E V+ VV+ HIS+LR KL + Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215 >gi|75908099|ref|YP_322395.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75701824|gb|ABA21500.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 242 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 +R S VP+I ++ + + + G DD V KP +E+ AR+ ++ RR+ Sbjct: 71 LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKTGASG 130 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ G I++ ++ R E L E +LE L++ G+ ++++I ++G Sbjct: 131 IPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEVWG 190 Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203 E V+ VV+ HIS+LR KL + Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215 >gi|37522238|ref|NP_925615.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35213238|dbj|BAC90610.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 245 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 +R S VP+I ++ + + + G DD V KP +E+ AR+ ++ RR Sbjct: 75 LRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRADRDTASG 134 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ G +++ ++ R +GE L E +LE +++ G+ ++++I ++G Sbjct: 135 IPSSGVIHVGDLKIDTNKRQVYKRGERIRLTGMEFSLLELVVSRSGEPFSRSEILQEVWG 194 Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203 E V+ VV+ HIS+LR KL + Sbjct: 195 YTPERHVDTRVVDVHISRLRSKLED 219 >gi|23098286|ref|NP_691752.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776511|dbj|BAC12787.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 227 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 71/144 (49%), Gaps = 10/144 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR+HS VP+I +S + G DD V KP H +LA++ AI RR + Sbjct: 65 RTIRSHSDVPIIFLSSRDHPMDMVMAMQLGADDYVQKPFHFEVLLAKIQAILRR-TYRYS 123 Query: 125 RAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + I++++ D + +G L + E IL L+ + + V++ ++ A++ Sbjct: 124 QTTNVDIKIWNQATINFSKCDIQYKGGSVELSKNESSILRILVDQKNQIVSRDELIRALW 183 Query: 179 GLFDEA-VEENVVESHISKLRKKL 201 DE + +N + ++++LRK L Sbjct: 184 D--DERFISDNTLTVNVNRLRKSL 205 >gi|548535|sp|P36556|BASR_SALTY RecName: Full=Transcriptional regulatory protein BasR gi|295211|gb|AAA72365.1| PmrA [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 222 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 53/227 (23%), Positives = 99/227 (43%), Gaps = 21/227 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G ++ E S + ++ L + + + Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDE-DGLH 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 L RI + +P++ ++ + +L + D G DD + KP E+ AR+ A+ RR Sbjct: 62 FLTRIRQKKYTLPVLILTAHDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 L V N G + + DG++ L +E +L LM G V + + Sbjct: 122 QGESELTVGNLTLNIGRHQAWRDGQE-------LTLTPKEYALLSRLMLKAGSPVHREIL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ IY +D N +E HI LR+K+G + + R GY + Sbjct: 175 YNDIYN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216 >gi|322373203|ref|ZP_08047739.1| DNA-binding response regulator [Streptococcus sp. C150] gi|321278245|gb|EFX55314.1| DNA-binding response regulator [Streptococcus sp. C150] Length = 226 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP +LA++ + RR Sbjct: 67 IRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYEFGKDQ 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + D QGEV L + E +IL+ L G V++ + ++ D Sbjct: 127 SLLEYRGVILNLKAMDLVYQGEVVSLTKNEFQILQVLFERAGNIVSREDLMKELWN-SDF 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL D +++K+ +GY + Sbjct: 186 FIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGYGL 222 >gi|313898659|ref|ZP_07832194.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312956543|gb|EFR38176.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 236 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 25/174 (14%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 +R P+I +S + + G DD + KP E+LARV + RR + Sbjct: 68 VRKDYDFPIIFLSAKSEDIDKITGLNIGADDYITKPFGSMELLARVRSQLRRYEQILMLK 127 Query: 121 ----VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S NR E G + + S ++ V ++ L +E ILE LM + G+ + Q Sbjct: 128 EHAVSSVNREEEIYSIGALELNSTTKEVRVDNQIVKLRPKEFMILELLMKHAGRVFSAQQ 187 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221 I+ A++ +EA+ V HI +KLR K+ DP + +GY I+ Sbjct: 188 IYEAVWN--EEAINTETVMVHI----RKLREKIELDPKHPRYLKVVWGIGYKIE 235 >gi|307068695|ref|YP_003877661.1| CheY-like receiver/winged-helix DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|306410232|gb|ADM85659.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pneumoniae AP200] Length = 143 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 11/120 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLK----------VSNNRAETGPIRVFSDGRDPEVQ 143 G DD + KP RE+LARV A+ RR K ++++ G ++V+ + + Sbjct: 4 GADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNIADDSWLFGTLKVYPERHEVYKA 63 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ L +E +L YLM + + + ++ I+G +D E +V+ HI KLR+K+ + Sbjct: 64 NKLLSLTPKEFELLLYLMKHPNMTLTRERLLERIWG-YDFGQETRLVDVHIGKLREKIED 122 >gi|299537386|ref|ZP_07050684.1| YxdJ [Lysinibacillus fusiformis ZC1] gi|298727178|gb|EFI67755.1| YxdJ [Lysinibacillus fusiformis ZC1] Length = 234 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 79/161 (49%), Gaps = 9/161 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R +R H+ P+I IS + ++G DD + KP ++ +LA++ + RR Sbjct: 67 RQLRQHTTCPIIFISARSGEMDQIFALENGGDDFITKPFNYEIVLAKIRSHLRRTYGEYA 126 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G + + + + PL ++E ILE LM N K V++ Q+ ++ Sbjct: 127 ARQEERTIKQGQLVLHLERMELHKNDLEIPLQKKECIILELLMGNAPKVVSREQLLEELW 186 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D+A V+EN + +++++RKKL + +++ R GY Sbjct: 187 D--DQAFVDENTLNVNMTRVRKKLADYHISSTIETVRGAGY 225 >gi|257439473|ref|ZP_05615228.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] gi|257198132|gb|EEU96416.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] Length = 241 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 75/144 (52%), Gaps = 13/144 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + +P++ + + + +G DD + KP E++AR+A++ RR N++A Sbjct: 78 IRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNHQA 137 Query: 127 ------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179 + +++ + R + F LP +E +L Y ++GK + K QI+ ++G Sbjct: 138 GAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVWGE 197 Query: 180 --LFDEAVEENVVESHISKLRKKL 201 +D++ N++ + IS+LRKKL Sbjct: 198 EYFYDDS---NIM-AIISRLRKKL 217 >gi|261415718|ref|YP_003249401.1| two component transcriptional regulator, winged helix family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372174|gb|ACX74919.1| two component transcriptional regulator, winged helix family [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326913|gb|ADL26114.1| DNA-binding response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 242 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 8/158 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-- 122 +I +P+I +S S ++ G DD + KP +LAR+ A+ RR + + Sbjct: 72 KIREKDKSLPIIILSAKNSDDDIINGLKFGADDYIPKPFSVPMLLARIEAVLRRSRQTME 131 Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G +RV E R+E ILEYL NR + ++++ ++G Sbjct: 132 NEGKLVAGNLRVNFREYTGVRGTEELAFTRKEIEILEYLWNNRDHAIPRSELLRKVWGYE 191 Query: 182 D-EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + E+V+ V+ HI+KLRKK+ + DP K + + Sbjct: 192 NAESVDTRTVDIHITKLRKKIED----DPAHPKLLVTF 225 >gi|229824434|ref|ZP_04450503.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271] gi|229786035|gb|EEP22149.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271] Length = 237 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 9/151 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ R IR S VP+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 64 LEVCREIRKQSAVPVIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRNL 123 Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 +V+ N G + + D GE L RE +L YL + G+ + + Sbjct: 124 VKEPEPQEVNKNEIVVGDLVIHQDAYIISKHGEEIELTHREFELLHYLARHIGQVMTREH 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++ +D + V+ I +LR+K+ + Sbjct: 184 LLETVWD-YDYFGDVRTVDVTIRRLREKIED 213 >gi|213968576|ref|ZP_03396718.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] gi|301385563|ref|ZP_07233981.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato Max13] gi|302060389|ref|ZP_07251930.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato K40] gi|302132437|ref|ZP_07258427.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213926509|gb|EEB60062.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] gi|331017510|gb|EGH97566.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 220 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 24/218 (11%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL +GY + +DG+S ++L E + + ++ F +L R +R Sbjct: 19 ALNTEGYTLDWLEDGLS--ALHALRSEPFDLLLLDLGLPRMDGF---------DLLRQLR 67 Query: 69 AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 A +P++ ++ + D+G DD + KP E+ ARV A+ RR S RA Sbjct: 68 AEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQ 124 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E I + + QG + E ++L LM GK V + ++ + +YG + + Sbjct: 125 PLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG-WQD 183 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE N +E I LRKKL +L + + R +GY ++ Sbjct: 184 KVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217 >gi|188583782|ref|YP_001927227.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179347280|gb|ACB82692.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 224 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A +P++ ++ + ++ D+G DD + KP E++AR+ AI RR Sbjct: 63 LRRLRGADVALPVLILTARDGWRERVEGIDAGADDYLVKPFRMEELVARLRAILRRTAGH 122 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + + + R V G L E R+L +L+ +G+ VA ++ ++G Sbjct: 123 ASPVLRAGAVELDTRTRAVSVAGRETDLTALEYRLLAFLLHRQGQVVAAGELLDHLHG-S 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D E N +E+ +++LR+ KLG ++++R GY + Sbjct: 182 DSDREANALEALLTRLRR----KLGPGIIETRRGHGYLV 216 >gi|167033602|ref|YP_001668833.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166860090|gb|ABY98497.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 221 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 74/160 (46%), Gaps = 19/160 (11%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A + VPL+ I+ L + D G DD + KP E+LAR+ A+ RR K E Sbjct: 69 ADNPVPLLIITARAELDDRVRGLDGGADDFLQKPFEMAELLARMRAVMRR-KGGRATPEL 127 Query: 129 GPIRVFSD--------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G V D P VQ L RE +L+ L+ G +++ ++ +YG Sbjct: 128 GNGTVSLDLVSKCARVMAQPPVQ-----LSNREFALLQALLIRPGAILSRAELEDRLYGW 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E VE N VE I LR+ KLG D + + R LG+ + Sbjct: 183 GNE-VESNAVEFLIHALRR----KLGKDVIRNIRGLGWMV 217 >gi|330983218|gb|EGH81321.1| DNA-binding response regulator QseB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 148 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 12/135 (8%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEV 146 D+G DD + KP E+ ARV A+ RR S RA E I + + +G Sbjct: 19 LDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQPLLEHAGISLDPASQQVSFKGSE 75 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 P+ E ++L LM GK V + ++ + +YG + + VE N +E I LRKKL +L Sbjct: 76 VPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG-WQDKVESNTLEVLIHNLRKKLSTEL- 133 Query: 207 FDPVDSKRFLGYSID 221 + + R +GY ++ Sbjct: 134 ---IRTVRGVGYLLE 145 >gi|325922833|ref|ZP_08184560.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325546690|gb|EGD17817.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 238 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 19/172 (11%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I ++ + D+G +D V KP +E++AR+ A+ R+ Sbjct: 71 EVLREIRQWSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLRQAGA 130 Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E+ VF DG R+ + GE PL R+E +L L+ + G+ V + Q+ Sbjct: 131 GSTVEES----VFDDGRLHIHLGLREVTLAGEAVPLSRKEYALLALLLKHAGRVVTQPQL 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG------FDPVDSKRFLGYS 219 ++G E + + + + KLR+KL + +P RF+G + Sbjct: 187 LREVWGPTHEE-DTHYLRILVGKLRQKLHDDAADPQYIVTEPGVGLRFIGVT 237 >gi|300697799|ref|YP_003748460.1| transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299074523|emb|CBJ54074.1| Transcriptional regulatory protein, probable baeR protein, response regulator for mdtABCD and acrD [Ralstonia solanacearum CFBP2957] Length = 222 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 84/170 (49%), Gaps = 3/170 (1%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G+ LE+ R +RA S +P++ ++ L + G DD + KP RE++AR+ Sbjct: 54 LMLPGKDGLEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARI 113 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 I RR++ + E+ +++ + ++G+ L E R+L L G+ +++ Sbjct: 114 KTILRRVQRGGAQPES-LLQIDNAAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRAN 172 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + IY V + V++H+ LR+K+ G + + S +GY +D Sbjct: 173 LLEQIYD-DHRIVTDRTVDTHVKNLRRKMELVSPGTEMIHSVYGVGYRLD 221 >gi|294500029|ref|YP_003563729.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294349966|gb|ADE70295.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 224 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/203 (23%), Positives = 97/203 (47%), Gaps = 8/203 (3%) Query: 24 VSLEGFNSLEFEEWLQSS---AREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISD 80 + LEG+ E E+ ++S A++ + ++ + E+ IR++ P+I ++ Sbjct: 21 LQLEGYVVHEAEDGEEASGLLAKQHIHLAVVDIMMPHKDGYEVCEEIRSYYDFPIILLTA 80 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP 140 L+ F +G DD V KP +E++ R+ A+ RR +V N + F D + Sbjct: 81 KDQLEDKEKGFLAGTDDYVTKPFEPKELIFRIKALLRRYEVVNEKMIVLN-NTFIDRKSY 139 Query: 141 EVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 EV G + LP +E +L L + G+ + ++ I+G D + ++ H+ +LR Sbjct: 140 EVHCSGRLLILPMKEFELLAQLASYPGRIFTREELIHLIWGA-DFNGDNRTIDVHVKRLR 198 Query: 199 KKLRNKLGFDPVDSKRFLGYSID 221 ++ + F + + R +GY ++ Sbjct: 199 ERFEHTDDF-VITTVRGVGYKLE 220 >gi|290352215|dbj|BAI78818.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+R + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRLQDI 122 Query: 122 SNNRA--ETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G R + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VWK-YDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|218441116|ref|YP_002379445.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218173844|gb|ACK72577.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 247 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR++ Sbjct: 75 LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKNGAPG 134 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ G I++ ++ R E L E +LE L++ G+ ++++I ++G Sbjct: 135 IPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 194 Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203 E V+ VV+ HIS+LR KL + Sbjct: 195 YTPERHVDTRVVDVHISRLRAKLED 219 >gi|156934385|ref|YP_001438301.1| DNA-binding transcriptional regulator PhoP [Cronobacter sakazakii ATCC BAA-894] gi|156532639|gb|ABU77465.1| hypothetical protein ESA_02216 [Cronobacter sakazakii ATCC BAA-894] Length = 223 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 102/221 (46%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ + G ++ + ++ + DV+ ++ L E L Sbjct: 4 LVVEDNALLRHHLKVQLSELGHQVDAAEDAKEADYYLNEHLPDVAIVDLGL--PDEDGLS 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R RA +P++ ++ Q ++ +G DD V KP H E++AR+ A+ RR Sbjct: 62 LIRRWRASEISLPVLVLTAREGWQDKVEVLGAGADDYVTKPFHIEEVVARMQALLRRNSG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ P V R+ + + L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVISMPPFVVDLSRREVTINDNLIRLTAFEYTIMETLIRNAGKVVSKDSLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E + ++ + +LRKK++ + + + + R GY D Sbjct: 181 DAELRESHTIDVLMGRLRKKIQAEYPGEAITTVRGQGYRFD 221 >gi|331698992|ref|YP_004335231.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953681|gb|AEA27378.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 218 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 11/130 (8%) Query: 80 DYPSLQTT-----LDF---FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 D P L T +DF D+G DD V KP E+LARV A+ RRL + E G + Sbjct: 73 DLPVLMLTARTDEVDFVVGLDAGADDYVGKPFRLAELLARVRALLRRL--TPEMVEVGGV 130 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 R+ GR V G L +E +L LM G+ V + +I ++ D + ++ Sbjct: 131 RMELSGRRVLVDGVEVGLANKEFELLRVLMLRAGQVVTREEILREVWNDPDLKTSKT-LD 189 Query: 192 SHISKLRKKL 201 H+S LR+K+ Sbjct: 190 MHMSWLRRKI 199 >gi|323126805|gb|ADX24102.1| Two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 236 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 61 LEVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120 Query: 121 -----VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 V+ A +G +++ D + G+ L RE +L +L + G+ + Sbjct: 121 TIETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVM 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ + +LR+K+ + Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 214 >gi|296128518|ref|YP_003635768.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] gi|296020333|gb|ADG73569.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] Length = 235 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 101/229 (44%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +D G +G + + E L+ A + L+ G Sbjct: 4 ILLVEDEESYRDPLSYQLGREGYDV--VTAATGPEALERFAEHGADLVLLDLMLPGLPGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ + + G DD V KP RE+LAR+ A+ RR Sbjct: 62 EVCRRLRLDSDVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRRDT 121 Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S A E G +R+ D V GE+ P P +E +LE L+ N + + + Q Sbjct: 122 SARPADDPEDDGVLEVGAVRMDVDRHTVHVHGELVPFPLKEFELLELLLRNPDRVLTRGQ 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + ++G D + ++ H+ ++R K+ R+ + + R LGY + Sbjct: 182 LIDRVWG-SDYVGDTKTLDVHVKRIRAKIERDPSAPTLLTTVRGLGYKL 229 >gi|254442742|ref|ZP_05056218.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198257050|gb|EDY81358.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 224 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 22/214 (10%) Query: 1 MFVLIDDRALVK--------DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52 + ++ DD AL + +GY + DG E L A D+ ++ Sbjct: 4 ILIVEDDEALARGLRDNFACEGYEVAYAADG-------DTGLELLLDGGA--DIVLLDVM 54 Query: 53 LIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L G G + E R R +P++ ++ + + + G DD V KP RE++AR Sbjct: 55 LPGLDGYSICEAAR--REGCSMPILMLTAKGQERDIVRGLELGADDYVVKPFSVRELIAR 112 Query: 112 VAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 V A RR + + R + G + D +G+ L R+E ++LEYL+ + GK + + Sbjct: 113 VRAFLRRHRSEDERCFSFGDFHLDRDSVRLTREGKEVKLTRKEYQLLEYLLIHSGKALTR 172 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 I ++++G V + V+ ++ LR K+ + Sbjct: 173 QGIMASVWG-SSVMVTQRSVDRCVTTLRGKIEKE 205 >gi|217971271|ref|YP_002356022.1| winged helix family two component transcriptional regulator [Shewanella baltica OS223] gi|217496406|gb|ACK44599.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] Length = 229 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/162 (22%), Positives = 82/162 (50%), Gaps = 14/162 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSN 123 +R H +VP++ ++ + + ++G +D ++KP RE++AR+ + R L + Sbjct: 68 LRQHDKVPVLILTARDQEEEKIRLLEAGANDYLSKPFGIRELIARIKVLVRDLVDEPALS 127 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + G +++ + + L ++E ++E LM++ G+ V +T++ I+G Sbjct: 128 DVLQFGALKLQKSTHQLWLDQQEIALTKKEFALIETLMSHPGQLVKQTELLRDIWG---- 183 Query: 184 AVEENVVESH-----ISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E + +SH +S+LRKKL + + ++ LGY + Sbjct: 184 --ETHTDDSHYLRILVSQLRKKLNDSTEQQLIKTEAGLGYRL 223 >gi|68250311|ref|YP_249423.1| transcriptional regulatory protein [Haemophilus influenzae 86-028NP] gi|68058510|gb|AAX88763.1| transcriptional regulatory protein QseB [Haemophilus influenzae 86-028NP] Length = 221 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 5/202 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D L+ +G G +++ F + +SA D ++ L G V Sbjct: 3 ILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSASYDAVVLDLTLPKLDGLDV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L+ R H VP++ ++ +L + SG DD + KP E+ AR+ A I RR Sbjct: 63 LQQWR--SNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRY 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ E +++ + R + + L RE ++LE M N+ ++++ I + Sbjct: 121 GYHHSVIEQAGVKLDQNQRSVWLNNQPISLTSREYKLLELFMLNKDCVLSRSSIEEKLSS 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 +DE + ++ HI LR+KL Sbjct: 181 -WDEEISSGALDVHIYNLRQKL 201 >gi|78222245|ref|YP_383992.1| two component transcriptional regulator [Geobacter metallireducens GS-15] gi|78193500|gb|ABB31267.1| two component transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 224 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 14/155 (9%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 S+VP++ I+ +++ + + G DD + KP E+LAR+ ++ RR ++ P Sbjct: 71 SEVPVLLITARGEIESRIKGLNFGADDYIVKPFDFHELLARLKSVIRR-----SKGRPSP 125 Query: 131 IRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDE 183 + D R G L E +LEYL N G+ +++T++ IY FD Sbjct: 126 LVAIDDLSLDTNSRSVCRGGREIRLSATEYNLLEYLALNSGRVISRTELTEHIYDTDFDR 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + NV++ +++ LR KL + + R GY Sbjct: 186 --DSNVIDVYVNHLRNKLDKGFDRQLIHTVRGAGY 218 >gi|30250065|ref|NP_842135.1| response regulator PhoB [Nitrosomonas europaea ATCC 19718] gi|30139172|emb|CAD86042.1| possible phoB; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding [Nitrosomonas europaea ATCC 19718] Length = 240 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 109/231 (47%), Gaps = 21/231 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +++ + G + NS E + + D+ ++ L GK +E Sbjct: 6 LVVEDESAIQELIAYNLRNAGYTAVCTNSAEQAAAMVNEVLPDLVLLDWMLPGKSG--IE 63 Query: 63 LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R +R + +P+I ++ + + ++G DD V KP RE++AR+ A+ RR Sbjct: 64 LARSLRRDPRTKPIPVIMLTARVDERDKVIGLETGADDYVTKPFSPRELIARIKAVLRRS 123 Query: 120 --KVSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + S+ + G +++ +D D + E+ P E R+L +LMA+ + Sbjct: 124 LPEASDEILDIGGVQINPMTHRVTVTDLNDGTHEKELLLSP-TEYRLLYFLMAHAERVHT 182 Query: 170 KTQIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + Q+ ++G +F VE+ V+ HI +LRK L D V + R GY Sbjct: 183 RAQLLDRVWGDHVF---VEDRTVDVHIRRLRKALDVAGKADLVQTVRGAGY 230 >gi|330879178|gb|EGH13327.1| DNA-binding response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 220 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 24/218 (11%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL +GY + +DG+S ++L E + + ++ F +L R +R Sbjct: 19 ALNTEGYTLDWLEDGLS--ALHALRSEPFDLLLLDLGLPRMDGF---------DLLRQLR 67 Query: 69 AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 A +P++ ++ + D+G DD + KP E+ ARV A+ RR S RA Sbjct: 68 AEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQ 124 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E I + + QG + E ++L LM GK V + ++ + +YG + + Sbjct: 125 PLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG-WQD 183 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE N +E I LRKKL +L + + R +GY ++ Sbjct: 184 KVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217 >gi|323127230|gb|ADX24527.1| Two-component system response regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 217 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 3/141 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S +P+I ++ T L F+ + D V KP ++ R+ + R+ Sbjct: 61 LEVLKTIRKTSDIPIIMLTALDDEYTQLVSFNHLISDYVTKPFSPLILIKRIENVL-RVS 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + G + V QG + L ++E I++YL K V + Q+ I+G Sbjct: 120 TPDEKHQIGDLLVDEIEHSVYWQGTLVKLTKKEYDIIDYLAKRHQKIVTRDQLMDDIWGY 179 Query: 181 FDEAVEENVVESHISKLRKKL 201 ++ V+++HI LRKK+ Sbjct: 180 --SELDTRVLDNHIKNLRKKM 198 >gi|312868964|ref|ZP_07729144.1| response regulator receiver domain protein [Lactobacillus oris PB013-T2-3] gi|311095528|gb|EFQ53792.1| response regulator receiver domain protein [Lactobacillus oris PB013-T2-3] Length = 229 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 78/148 (52%), Gaps = 9/148 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R S +P++ +S + + SG DD V KP + E++ARV ++ RR + Sbjct: 61 MEVIKQVRKDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRTQ 120 Query: 121 --VSNNRAE---TGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173 V+N++ + GP+ + D + + ++G+V L E IL YL+A+ RV + I Sbjct: 121 GEVTNDQPDVLNVGPLIINKDSHEVKTIKGDVIQLTALEFGIL-YLLASHPNRVFSADDI 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 F ++ + V V H+S LR K+ Sbjct: 180 FERVWQQ-ESVVSAKTVMVHVSHLRDKI 206 >gi|300214110|gb|ADJ78526.1| Two-component response regulator [Lactobacillus salivarius CECT 5713] Length = 229 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 8/168 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R SQ+P++ +S + G DD V KP + E++ARV ++ RR + Sbjct: 61 MEVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRAE 120 Query: 121 --VSNN---RAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V NN + E GP+ + D + ++G+ L E IL L ++ + + +IF Sbjct: 121 HNVKNNEPDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHSNRVFSADEIF 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221 ++ + V V H+S LR K+ + + V + +GY I+ Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227 >gi|295697098|ref|YP_003590336.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295412700|gb|ADG07192.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 243 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 10/169 (5%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ +I+R +P+I ++ + + G DD + KP RE+ AR+ A+ RR Sbjct: 62 LDICKILRQEGITIPIIFLTALDDEVERVLCLEMGADDYITKPFRPRELAARIRAVLRRY 121 Query: 120 KVSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++S N + GP+ + V G+ L +E ++L +L + K V + Sbjct: 122 QLSGNGEQRTADVLHAGPVIIDLAKHTVTVFGQDVSLTLKEFQLLHHLAEHADKVVTRDT 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + I+G F + VV+ HIS LR K+ N + + R +GY + Sbjct: 182 LLDHIWG-FKYTGDTRVVDVHISHLRNKIEPNPASPQLIKTVRGVGYKL 229 >gi|229014970|ref|ZP_04172051.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228746320|gb|EEL96242.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 207 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 8/142 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123 IR +P+I +S + SG DD ++KP + E++ARV + RR N Sbjct: 47 IREERTIPIIMLSAKSEDMDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRYTKYNTET 106 Query: 124 ----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N E G + + +D R V+G+ L +E ILE L N+G ++ +I+ A++ Sbjct: 107 NKNKNIIEIGNLTLNTDARQVWVRGKETRLTPKEFDILELLARNKGMVLSIEKIYEAVWK 166 Query: 180 LFDEAVEENVVESHISKLRKKL 201 + NV+ HI+++R K+ Sbjct: 167 ENFYKSDNNVM-VHITRIRDKI 187 >gi|297560783|ref|YP_003679757.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845231|gb|ADH67251.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 241 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 19/158 (12%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--P 130 +P++ ++ ++Q + +G DD V KP E++ R+ AI RR S R G P Sbjct: 85 LPVLFLTARDTVQDRVAGLRAGADDYVTKPFSLEEVVLRLNAILRR---SGRRGSEGAEP 141 Query: 131 IR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 +R + +G G L E +L YL+ N GK V+K QI ++G E+ Sbjct: 142 LRYADLELDEEGHQVRRAGAPVRLSPTEFALLRYLLLNAGKVVSKAQILDRVWG--GESD 199 Query: 186 EENVVESHISKLRKKL---RNKLGFDPVDSKRFLGYSI 220 + VVE+++S LR+K+ R L + + R +GYS+ Sbjct: 200 DIRVVETYVSYLRRKVDAGRPAL----IHTVRGVGYSL 233 >gi|254431718|ref|ZP_05045421.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] gi|197626171|gb|EDY38730.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] Length = 234 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 78/150 (52%), Gaps = 2/150 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130 Q P++ ++ ++Q + ++G DD + KP E+LAR+ A+ RR + ++ A G Sbjct: 72 QTPVLLLTALDAVQDRVQGLNAGADDYLVKPFDFTELLARLRALMRRPPLQSDVALRVGD 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + R + L RE +LEYLM + + +++TQI ++ FD + V+ Sbjct: 132 LELDAAQRLVKRGERPIELSPREFSLLEYLMRHPNQVLSRTQIAQHVWS-FDFYGDYKVI 190 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +I LR+K+ + + R +GYS+ Sbjct: 191 DVYIGYLRRKIDRHGASSMIHTVRGVGYSM 220 >gi|220928581|ref|YP_002505490.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219998909|gb|ACL75510.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 224 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 11/159 (6%) Query: 67 IRAHSQVPLI---GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--- 120 +R S VP+I + D P++ LD G DD ++KP+ E+++R+ AI RR K Sbjct: 65 VRQTSTVPIIFMTALDDEPNVVFGLDI---GGDDYISKPVRTSELISRINAIMRRQKQTD 121 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R +G + V V + L E ++L L+ N+GK +++ I ++ Sbjct: 122 GLDTGRITSGSVVVEPLKCKVCVNSQEVFLTAVEYKLLLVLLENKGKVMSRNTIIEKLWD 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + V+ N + ++ +LR+K+ +++ R LGY Sbjct: 182 IDSNFVDYNTLNVYMKRLREKIETG-DEKHIETVRGLGY 219 >gi|71736484|ref|YP_275217.1| DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557037|gb|AAZ36248.1| DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323718|gb|EFW79802.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320328357|gb|EFW84361.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330882464|gb|EGH16613.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330889733|gb|EGH22394.1| DNA-binding response regulator [Pseudomonas syringae pv. mori str. 301020] gi|330987871|gb|EGH85974.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010798|gb|EGH90854.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 227 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 7/159 (4%) Query: 67 IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVS 122 +RA P++ IS + + +G DD + KP E+ ARV + RR + Sbjct: 67 LRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNPVSAG 126 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181 + + + R+ GE L E ++LE+LM N G+ + + IF ++G F Sbjct: 127 KTVLQVADLELNLISREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEVWGYHF 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D N+++ HI +LRKK+ + + R GY I Sbjct: 187 DPGT--NLIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223 >gi|70729143|ref|YP_258879.1| OmpR family DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68343442|gb|AAY91048.1| DNA-binding response regulator, OmpR family [Pseudomonas fluorescens Pf-5] Length = 254 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 16/165 (9%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE L L R +R S +P++ ++ + + G DD + KP RE++AR+ Sbjct: 76 LMLPGEDGLSLCRWLRTESDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 135 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165 I RR V ++R+E F + R V G V PL E R+L ++ R Sbjct: 136 QTILRR--VRDDRSEQRANIRFDNWRLNSVLRQLISADGLVVPLSNAEFRLL-WVFIERP 192 Query: 166 KRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 +RV ++ Q+ A G EA + + I L +LR KLG DP Sbjct: 193 RRVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 232 >gi|30020626|ref|NP_832257.1| two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|206971406|ref|ZP_03232356.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218236069|ref|YP_002367236.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228921244|ref|ZP_04084572.1| Sensor histidine kinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228958792|ref|ZP_04120503.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229070036|ref|ZP_04203308.1| Sensor histidine kinase [Bacillus cereus F65185] gi|229079729|ref|ZP_04212262.1| Sensor histidine kinase [Bacillus cereus Rock4-2] gi|229109963|ref|ZP_04239543.1| Sensor histidine kinase [Bacillus cereus Rock1-15] gi|229127905|ref|ZP_04256890.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4] gi|229145142|ref|ZP_04273534.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24] gi|229150755|ref|ZP_04278969.1| Sensor histidine kinase [Bacillus cereus m1550] gi|229178880|ref|ZP_04306240.1| Sensor histidine kinase [Bacillus cereus 172560W] gi|29896178|gb|AAP09458.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|206733391|gb|EDZ50563.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218164026|gb|ACK64018.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228604645|gb|EEK62106.1| Sensor histidine kinase [Bacillus cereus 172560W] gi|228632842|gb|EEK89457.1| Sensor histidine kinase [Bacillus cereus m1550] gi|228638340|gb|EEK94778.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24] gi|228655549|gb|EEL11402.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4] gi|228673484|gb|EEL28748.1| Sensor histidine kinase [Bacillus cereus Rock1-15] gi|228703569|gb|EEL56022.1| Sensor histidine kinase [Bacillus cereus Rock4-2] gi|228713079|gb|EEL64982.1| Sensor histidine kinase [Bacillus cereus F65185] gi|228800889|gb|EEM47795.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228838414|gb|EEM83727.1| Sensor histidine kinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 231 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 13/207 (6%) Query: 27 EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+N + + +E LQ + +V + ++ LE+ + +R ++ VP++ +S Sbjct: 25 EGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135 + +G DD + KP + E++ARV A+ RR N + E G IR+ S Sbjct: 85 DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSQKNEDGIIRIRSVEIHK 144 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 +V GE L E IL L +N G+ + +IF ++ D V HIS Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203 Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221 LR KL + G + + +GY I+ Sbjct: 204 NLRDKLETVINGEKFIHTVWGVGYKIE 230 >gi|42784056|ref|NP_981303.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47568029|ref|ZP_00238735.1| DNA-binding response regulator [Bacillus cereus G9241] gi|217962340|ref|YP_002340912.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141591|ref|ZP_04270123.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST26] gi|42739987|gb|AAS43911.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47555332|gb|EAL13677.1| DNA-binding response regulator [Bacillus cereus G9241] gi|217065428|gb|ACJ79678.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228641871|gb|EEK98170.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST26] Length = 232 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 55/159 (34%), Positives = 78/159 (49%), Gaps = 18/159 (11%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172 KV+ N++ E G + + + R V GE L +E IL YL+A+ K+V + Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDIL-YLLASHPKKVYNVEN 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL-----RNKL 205 IF ++ D+ E N V HI LRKKL +NKL Sbjct: 183 IFQQVWA--DDYFEGGNTVMVHIRTLRKKLGEDKRKNKL 219 >gi|323692686|ref|ZP_08106915.1| two-component system response regulator [Clostridium symbiosum WAL-14673] gi|323503240|gb|EGB19073.1| two-component system response regulator [Clostridium symbiosum WAL-14673] Length = 236 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 91/213 (42%), Gaps = 24/213 (11%) Query: 27 EGFNSLEF----EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82 EGF +E E +S D+ ++ + GK + L IR VP++ ++ Sbjct: 30 EGFEVIEASNGKEAVEKSGGSVDLIILDVMMPGKSGILACLE--IRKKLTVPILFLTART 87 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRV----- 133 F +G DD + KP + E++ARV A+ RR V N + + I++ Sbjct: 88 QDSDKALGFCAGGDDYLAKPFSYTELVARVKAMLRRYYVYQGGGNRKEDDAQIQIRDLLL 147 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D R+ ++G L E RIL L NRGK I+ +++ + N V H Sbjct: 148 NKDSREVRLEGGEILLTDLEYRILLLLAENRGKIFTIQNIYESVWEEPYYYISNNTVMVH 207 Query: 194 ISKLRKKLRNKLGFDPVDSKRFL-----GYSID 221 I LRKKL DP + K + GY I+ Sbjct: 208 IRNLRKKLEK----DPKNPKYIVNVWGKGYRIE 236 >gi|281492338|ref|YP_003354318.1| two-component system response regulator [Lactococcus lactis subsp. lactis KF147] gi|281376002|gb|ADA65493.1| Two-component system, response regulator [Lactococcus lactis subsp. lactis KF147] Length = 223 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 17/164 (10%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------- 118 +R SQ+P+I IS + + G DD V KP + A++ A+ RR Sbjct: 66 LRKLSQIPIIFISSASDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIE 125 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 L+ + + +G E++ L E +IL L G+ V K +I + Sbjct: 126 KLEFAGYVLSENTLISTQEGEREEIE-----LTSSENKILTLLFRGNGEVVTKEKILQEL 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + DE ++ N + +++LRKKL ++GFD + +KR GY++ Sbjct: 181 WQT-DEFIDANTLNVKMTRLRKKL-GEIGFDKHIMTKRGSGYAL 222 >gi|268609712|ref|ZP_06143439.1| hypothetical protein RflaF_09472 [Ruminococcus flavefaciens FD-1] Length = 219 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 100/229 (43%), Gaps = 28/229 (12%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD + D ++G ++ S L S R D+ ++ L G GE++ Sbjct: 4 IMIVDDDISISDMLTEALTNEGYTVRKAYSGTEALMLLSQNRPDLILLDLMLPGLTGEQL 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L P I +P+I +S + + G D V KP + +E+LARVA R K Sbjct: 64 L--PEI----KDIPVIVVSAKADISDKVGLLLGGAADYVTKPFNIQELLARVAVQLR--K 115 Query: 121 VSNNRA-----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 +N A +T V +DG + L R E IL+ L+ N + VA Sbjct: 116 NANTSADNIMSYRELTLDTASHIVSADGVE-------IRLTRTEYAILKLLICNPEQVVA 168 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 K I I + E++ ++ HI LR+KLR+ G D + + +G+ Sbjct: 169 KLTILERIAADTPDCTEDS-LKIHIHNLRRKLRSVTGQDYISAVWGIGF 216 >gi|253580205|ref|ZP_04857472.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848724|gb|EES76687.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 229 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 LE R +R + +I ++ + +++G DD + KP +L ++ A +RR Sbjct: 61 LEFVRWMRCNYNTYIICLTALDQEIDQVMGYEAGADDYITKPFSLSVLLLKIEAHFRRRQ 120 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + +G I + ++ L + E ++L + + N + ++KTQI ++ Sbjct: 121 EKTEAGKMISGDIVFIAGEMKVLIKSREISLTKTELKMLTFFLQNPKQILSKTQILENVF 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 L + V+EN + +I +LR+K+ + PV K G WN Sbjct: 181 DLEGDFVDENTIAVNIRRLREKIEDNPA-APVYIKNIRGLGYIWN 224 >gi|229090970|ref|ZP_04222194.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|228692371|gb|EEL46106.1| DNA-binding response regulator [Bacillus cereus Rock3-42] Length = 234 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ ++ + F G DD + KP E+L RV A+ +R +++ +++ Sbjct: 77 LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELLVRVKALLKRYQITVSQS 136 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + + + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 137 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 195 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + + + + R LGY ++ Sbjct: 196 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 231 >gi|257125818|ref|YP_003163932.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257049757|gb|ACV38941.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 226 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 82/165 (49%), Gaps = 10/165 (6%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 E+ + IR + + P++ ++ ++ + D G DD + KP E++AR+ + RR Sbjct: 60 FEILKKIRENGIKTPVLLLTARDGIEDRVKGLDYGADDYLVKPFAFDELMARIRVLLRRN 119 Query: 120 KVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 SN+ A + + V + D L RE ILEY++ N+ + +++ QI Sbjct: 120 PTSNSNASNVFKIANLTVNCNSHDVFRDETFIKLSTREFTILEYMIRNKERVLSREQIEQ 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218 I+ +D NV++ +I LR+K+ GF+P + + R +GY Sbjct: 180 HIWN-YDYEGGTNVIDVYIRYLRRKIDK--GFEPKLIHTIRGIGY 221 >gi|222080821|ref|YP_002540860.1| phosphate regulon transcriptional regulatory protein PhoB [Agrobacterium radiobacter K84] gi|221725500|gb|ACM28589.1| phosphate regulon transcriptional regulatory protein PhoB [Agrobacterium radiobacter K84] Length = 226 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 3/152 (1%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 + +P+I ++ + L G DD + KP EI+ RV + RR+K++ ++ Sbjct: 75 AAIPVIMLATDATENDKLLALSLGADDYLVKPFSMLEIVLRVRNLLRRMKINESQLVLKV 134 Query: 131 IRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 + D V + L E +ILE+LM N G +T + + ++G V+ Sbjct: 135 SDIVLDRNSYTVLRSNKEIKLGPTEYKILEFLMRNPGTVHTRTDVLTNVWGPH-ATVDPR 193 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 VV+ HI +LRK + N D + + R GY++ Sbjct: 194 VVDVHIGRLRKCISNSENDDIIRTIRGAGYAL 225 >gi|254417772|ref|ZP_05031496.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] gi|196183949|gb|EDX78925.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] Length = 223 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 9/155 (5%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETG 129 Q P++ +S ++ + +G DD + KP E++ARV A+ RR + + + G Sbjct: 72 QTPVLFLSALGEVEDRVTGLKAGADDYLVKPYAFAELIARVEALSRRRETGGVQTVLKVG 131 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 + + R L RE ++LE+LM + G+ V +T + ++ FD + N Sbjct: 132 DLEMNLIARTVHRGATEIDLQPREFQLLEFLMRHAGQSVTRTMLLEKVWEYHFDP--QTN 189 Query: 189 VVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221 V++ HIS+LR K+ GFD + + R GY ++ Sbjct: 190 VIDVHISRLRSKIDK--GFDRAMLQTVRGAGYRLE 222 >gi|147676785|ref|YP_001211000.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146272882|dbj|BAF58631.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 225 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 90/189 (47%), Gaps = 12/189 (6%) Query: 38 LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 L ++ + D+ ++ + G E+ R +RA S +P++ ++ + + D G DD Sbjct: 41 LAAAWKPDLVVLDVLM--PGTDGWEVCRRLRAGSSLPILMLTAKDEVADRVKGLDLGADD 98 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPR 151 + KP E+LAR+ A+ RR + ++ P+ V++D R+ G L Sbjct: 99 YLVKPFALEELLARIRALLRRSRQADTAMR--PL-VYADLTLDHATREVRRGGRPIQLTA 155 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 RE +L M + + + + QI ++G+ D E NV+E ++ LR+KL + Sbjct: 156 REFELLALFMEHPRQVLTRDQIMDRVWGI-DYGGESNVLEVYVGMLRQKLEEGGEKRIIH 214 Query: 212 SKRFLGYSI 220 + R +GY + Sbjct: 215 TVRGVGYVL 223 >gi|83814805|ref|YP_446586.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|294508518|ref|YP_003572577.1| response regulator DrrA [Salinibacter ruber M8] gi|83756199|gb|ABC44312.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|294344847|emb|CBH25625.1| response regulator DrrA [Salinibacter ruber M8] Length = 245 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 68/128 (53%), Gaps = 13/128 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKV---SNNRAETGPIRVFSDGRDPE-----VQGE 145 G DD + KP RE+LARV A++RR++V + +A+ PI + +PE V+GE Sbjct: 100 GADDYITKPFSIREVLARVKALFRRVEVDQETQGQADDTPIELGKVVVEPEKRKVTVEGE 159 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 L +E +L + G+ ++ ++ ++G + + + V +HI+ +LRNK+ Sbjct: 160 AVDLTSKEFELLLLFARHPGRAFSRDELLDEVWG-YQYSGYSHTVNTHIN----RLRNKI 214 Query: 206 GFDPVDSK 213 DP + + Sbjct: 215 EPDPSEPR 222 >gi|18311346|ref|NP_563280.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|110799262|ref|YP_697054.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168205193|ref|ZP_02631198.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168210332|ref|ZP_02635957.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168213275|ref|ZP_02638900.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|168216671|ref|ZP_02642296.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|169347122|ref|ZP_02866064.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|182625790|ref|ZP_02953557.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|18146030|dbj|BAB82070.1| two-component response regulator [Clostridium perfringens str. 13] gi|110673909|gb|ABG82896.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|169296805|gb|EDS78934.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|170663236|gb|EDT15919.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170711566|gb|EDT23748.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170715215|gb|EDT27397.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|177908946|gb|EDT71433.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|182381197|gb|EDT78676.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 232 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 103/232 (44%), Gaps = 22/232 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 +++DD ++D +G+++ +GF +LE + +ED+ + ++ Sbjct: 9 LVVDDEKEIRDAIDIYLRGEGINVIKAGDGFEALEILD------KEDIHLVVLDIMMPKL 62 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + IR +P+I +S + + G DD V KP +H E++ARV + RR Sbjct: 63 DGMRTCLKIRESRNIPIILLSAKSEDSDKILGLNIGADDYVTKPFNHLELVARVKSQLRR 122 Query: 119 LKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 NR T + V D + ++GE L E +IL L ++ G+ + + Sbjct: 123 YDYPLNRENTQDLIVIKDLTIDTVNKQVSLRGENIKLTATEYKILTLLASHPGRIFSIKE 182 Query: 173 IFSAIYGLFDEAV--EENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+ ++ +E EN V HI ++R+K+ N + + LGY ID Sbjct: 183 IYERVW---EEPFYKSENTVTVHIRRMREKIEINSKEPEYIKVVWGLGYKID 231 >gi|332526604|ref|ZP_08402711.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332110867|gb|EGJ11044.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 224 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 12/132 (9%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146 D+G DD + KP E+ AR+ A+ RR RA G + + R G+ Sbjct: 99 LDAGADDYLVKPFEFDELTARIRAVTRR---HGGRAAPLLTHGGVTLDPATRQVTKDGQP 155 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L RE +LE LM G +++ Q+ +YG + +AVE N V ++ +LR+ KLG Sbjct: 156 VLLSSREFAVLEALMQRPGAVLSRAQLEDRLYG-WGDAVESNAVSVYVHQLRR----KLG 210 Query: 207 FDPVDSKRFLGY 218 D + + R +GY Sbjct: 211 ADFIRNMRGVGY 222 >gi|306821334|ref|ZP_07454943.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550621|gb|EFM38603.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 227 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 13/181 (7%) Query: 45 DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D+ ++ L GK GE ++ R IR S VP+I ++ T +D + G DD ++KP Sbjct: 48 DLILLDLMLPGKSGEDII---REIRQVSAVPIIVLTAKGDTNTLVDILEMGADDYISKPF 104 Query: 104 HHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRIL 157 RE+ AR + R+ K+ N+ + ++ F D R V L ++E +L Sbjct: 105 DVREVKARAKSHLRK-KMDNHTFQEEVLK-FEDLTLNISSRTASVGENPITLTQKEFDML 162 Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217 + + K +++ ++G ++N + +HIS+LR K++ + D +D+ +G Sbjct: 163 SLFLHEPKRVFTKEILYTKVWGDMYYG-DDNTINAHISRLRSKIKEYMQKDIIDTVWGVG 221 Query: 218 Y 218 + Sbjct: 222 F 222 >gi|290770175|gb|ADD61934.1| putative protein [uncultured organism] Length = 220 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 84/162 (51%), Gaps = 5/162 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLK 120 ++ R IR S +P+I ++ S L + G DD ++KP + + +LAR+ + R + Sbjct: 61 QVCREIRQKSNLPIIVLTSRNSDFDELMSLNIGADDYISKPYNAQVLLARIQKLLARTYE 120 Query: 121 VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +N T + + + QG+ L + E IL LM N+G + + I ++ Sbjct: 121 IQDNVVLTHKGLTLNLLKAEISYQGQRKSLTKNEMGILRLLMVNKGNIIPRDAIIDELWQ 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 ++ ++EN + +I +LRK L ++G D +++KR LGY + Sbjct: 181 -SEQFIDENTLNVNIVRLRKTLA-EIGLPDYLETKRGLGYCV 220 >gi|251781983|ref|YP_002996285.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390612|dbj|BAH81071.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 236 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 61 LEVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120 Query: 121 -----VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 V+ A +G +++ D + G+ L RE +L +L + G+ + Sbjct: 121 TIETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVM 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ + +LR+K+ + Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 214 >gi|240136993|ref|YP_002961462.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Methylobacterium extorquens AM1] gi|254558845|ref|YP_003065940.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Methylobacterium extorquens DM4] gi|240006959|gb|ACS38185.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Methylobacterium extorquens AM1] gi|254266123|emb|CAX21875.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Methylobacterium extorquens DM4] Length = 232 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 9/167 (5%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L R +R + P++ +S + + +G DD + KP E+LAR + RR Sbjct: 60 LSLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRR 119 Query: 120 KVSNNRAETGPIRVFS---DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++E RV D V G L RE R+LEYLM + G+ V +T + Sbjct: 120 TAATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLL 179 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ FD + NV++ H+S+LR K+ + + R GY I Sbjct: 180 EHVWDYHFDP--QTNVIDVHVSRLRAKIDRGFEHPMIHTVRGAGYVI 224 >gi|206560046|ref|YP_002230810.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|198036087|emb|CAR51982.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 221 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 2/137 (1%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAET 128 + P++ ++ L + D+G DD + KP E+ AR+ A+ RR + + R Sbjct: 70 YDATPVLIVTARDQLSDRIRGLDAGADDYLVKPFQLDELYARLRALTRRSQGRVSERLVC 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 + V R+ GE L E R L LM +G+ V + Q+ +YG D A+E N Sbjct: 130 RDVHVDPARREVTRAGEPVALSIHEYRTLLALMERQGRVVTRAQLEERVYG-NDGAIESN 188 Query: 189 VVESHISKLRKKLRNKL 205 + +I +LR+KL ++L Sbjct: 189 TIAVYIHQLRRKLGDEL 205 >gi|330863190|emb|CBX73317.1| signal transduction histidine-protein kinase baeS [Yersinia enterocolitica W22703] Length = 670 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 11/170 (6%) Query: 36 EWLQSSAREDVSAIEAF--------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTT 87 +WL + A E V+A+ L+ G + + R IR S VP++ ++ Sbjct: 500 QWLTNGA-EVVAAVRQSPPAIILLDLMLPGSDGISICREIRRFSDVPIMMVTAKTEEIDR 558 Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPIRVFSDGRDPEVQGEV 146 L + G DD + KP RE++ARV I RR + + +E+ P+ + QG + Sbjct: 559 LLGLEIGADDYICKPYSPREVVARVKTILRRCQQQREQPSESAPLIIDESRFQASYQGHL 618 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 L E R+L+ L G ++ Q+ + +Y + V + ++SHI K Sbjct: 619 LELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY-RVVTDRTIDSHIKK 667 >gi|322411348|gb|EFY02256.1| Two-component response regulator [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 236 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 61 LEVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120 Query: 121 -----VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 V+ A +G +++ D + G+ L RE +L +L + G+ + Sbjct: 121 TIETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVM 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ + +LR+K+ + Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 214 >gi|302342499|ref|YP_003807028.1| two component transcriptional regulator, winged helix family [Desulfarculus baarsii DSM 2075] gi|301639112|gb|ADK84434.1| two component transcriptional regulator, winged helix family [Desulfarculus baarsii DSM 2075] Length = 227 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 79/152 (51%), Gaps = 10/152 (6%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 ++P++ ++ S + F+ G DD + KP RE++ RV AI RR + ++ P+ Sbjct: 77 RIPVLMLTALASETDRIVGFELGADDYLAKPFSPRELVLRVRAILRR--QTGPEEQSAPL 134 Query: 132 R-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 R + D + + E+ L E ++L +L+AN G+ + Q+ ++G ++ Sbjct: 135 RKDALVIHPDRFEVRIDDEMVALTATEFKLLHHLVANAGRVQTRQQLLEHVWG-YEYDGY 193 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V++H+ +LRKK+ L D +++ R +GY Sbjct: 194 ARTVDTHVRRLRKKI-GPLS-DDIETIRGIGY 223 >gi|295090391|emb|CBK76498.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 237 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 8/142 (5%) Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE-- 141 LQ + G DD + KP + +LAR+ ++ RR + + ++ DP Sbjct: 93 LQDEIHALGLGADDYLTKPCNMERLLARIKSLLRR--TEQQQIQHDLLKGNGFLLDPHTF 150 Query: 142 ---VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 + + LP E +IL L+ N + V+K ++F A++G D+ ++EN ++ + ++LR Sbjct: 151 TIYLGKTSYVLPPNEGKILLTLLMNYPRTVSKEELFHALWGT-DKFIDENALQVNFTRLR 209 Query: 199 KKLRNKLGFDPVDSKRFLGYSI 220 K +RN D +++ R GY + Sbjct: 210 KTMRNYGLDDRIETVRGEGYRL 231 >gi|256423864|ref|YP_003124517.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256038772|gb|ACU62316.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 224 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 10/152 (6%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G K+LE I + Q +I IS SL + G DD + KP H E+ AR+ + Sbjct: 57 GDGLKILE--EIKEQNKQDGVIIISAKNSLDDKIKGLQIGADDYLTKPFHLPELAARIYS 114 Query: 115 IYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR + N N E +++ + V L ++E +L Y ++N+ K ++K+ + Sbjct: 115 VIRRKQFGNVNIIELNELKINLLAKTVSVNDNNVVLTKKEFDLLLYFISNKNKVISKSAL 174 Query: 174 FSAIYG----LFDEAVEENVVESHISKLRKKL 201 + G +FD + + HI L+KKL Sbjct: 175 AEHLSGDVADMFDNY---DFIYVHIKNLKKKL 203 >gi|229061003|ref|ZP_04198357.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228718372|gb|EEL70006.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 236 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 7/157 (4%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126 RA+ +PL+ ++ + F+ G DD + KP E+ RV A+ +R K+ S + Sbjct: 81 RANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIGSTQKI 140 Query: 127 ETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 G V D + +V E LP +E +L L G+ + Q+ I+G+ D A Sbjct: 141 HFG--NVILDRQTYKVMNGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGI-DYA 197 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ V+ HI +LR++ F +++ R LGY ++ Sbjct: 198 GDDRTVDVHIKRLRERFATTPDFR-IETVRGLGYRLE 233 >gi|187777886|ref|ZP_02994359.1| hypothetical protein CLOSPO_01478 [Clostridium sporogenes ATCC 15579] gi|187774814|gb|EDU38616.1| hypothetical protein CLOSPO_01478 [Clostridium sporogenes ATCC 15579] Length = 230 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 6/145 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL IR +P+I IS ++ G DD + KP E+ AR+ + RR K Sbjct: 65 ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124 Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +N A E I + D R+ V + L RE IL+ LM K K +F + Sbjct: 125 FSNIAPQNLLEYKEISLNKDTREVFVYDKQIMLTSREFDILQLLMGYPKKVFTKANLFES 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++ + ++N + HIS LR KL Sbjct: 185 VWS-SEYLCDDNTINVHISNLRNKL 208 >gi|196034428|ref|ZP_03101837.1| DNA-binding response regulator [Bacillus cereus W] gi|196042110|ref|ZP_03109394.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218905762|ref|YP_002453596.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228917175|ref|ZP_04080732.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|301056045|ref|YP_003794256.1| response regulator [Bacillus anthracis CI] gi|195992970|gb|EDX56929.1| DNA-binding response regulator [Bacillus cereus W] gi|196027046|gb|EDX65669.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218539918|gb|ACK92316.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228842376|gb|EEM87467.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300378214|gb|ADK07118.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 230 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 18/203 (8%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66 ++ LVK+G+ DG EG N+ +L+ S D+ ++ ++ K + LE+ RI Sbjct: 19 EKYLVKEGFQVTIASDGE--EGVNT-----YLKGSF--DLIILD-IMMPKLDG-LEVVRI 67 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNR 125 IR S VP++ +S + G DD + KP E+ ARV A I R K S Sbjct: 68 IREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKYSATE 127 Query: 126 AETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 I++ DP E G+ L +E IL+ + N+ + K QI++ I+ Sbjct: 128 TTEKTIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTLIWN- 186 Query: 181 FDEAVEENVVESHISKLRKKLRN 203 + ++NV+ H+ +LR+K+ + Sbjct: 187 EEYYGDDNVINVHMRRLREKIES 209 >gi|110801717|ref|YP_699624.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682218|gb|ABG85588.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 232 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 103/232 (44%), Gaps = 22/232 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 +++DD ++D +G+++ +GF +LE + +ED+ + ++ Sbjct: 9 LVVDDEKEIRDAIDIYLRGEGINVIKSGDGFEALEILD------KEDIHLVVLDIMMPKL 62 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + IR +P+I +S + + G DD V KP +H E++ARV + RR Sbjct: 63 DGMRTCLKIRESRNIPIILLSAKSEDSDKILGLNIGADDYVTKPFNHLELVARVKSQLRR 122 Query: 119 LKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 NR T + V D + ++GE L E +IL L ++ G+ + + Sbjct: 123 YDYPLNRENTQDLIVIKDLTIDTVNKQVSLRGENIKLTATEYKILTLLASHPGRIFSIKE 182 Query: 173 IFSAIYGLFDEAV--EENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+ ++ +E EN V HI ++R+K+ N + + LGY ID Sbjct: 183 IYERVW---EEPFYKSENTVTVHIRRMREKIEINSKEPEYIKVVWGLGYKID 231 >gi|330995652|ref|ZP_08319550.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paraprevotella xylaniphila YIT 11841] gi|329574711|gb|EGG56272.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paraprevotella xylaniphila YIT 11841] Length = 232 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 5/149 (3%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G K+ ++ + +R +P+I ++ + + F G DD ++KP RE+ R+ A+ Sbjct: 62 GFKMAKMLKQVRETRDIPIIFLTARDTENDAVTGFTLGADDYISKPFSLREVQMRIKAVL 121 Query: 117 RRLKVSNN--RAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR A G +++ + ++ + GE L + E IL L+ N G+ ++ + Sbjct: 122 RRTAPQQAVPAAYIGFKELKLDLNKKEAVLCGEALQLTKTEFEILRLLLENEGRVFSRAE 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I I+ D V + V+ +I++LRKKL Sbjct: 182 ILRRIWN-NDAEVLDRTVDVNITRLRKKL 209 >gi|294013097|ref|YP_003546557.1| CheY-like response regulator [Sphingobium japonicum UT26S] gi|292676427|dbj|BAI97945.1| CheY-like response regulator [Sphingobium japonicum UT26S] Length = 239 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 38/222 (17%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGE 58 +L+DD +++ G +G F E ++ R + +AI+ ++ GE Sbjct: 7 LLLVDDERSIREPLAQYLGRNG-----FRVTAVENAAEARVRLNANAIDLVILDIMMPGE 61 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L L R IR S++P+I ++ + + G DD V KP RE++AR+ I+RR Sbjct: 62 DGLSLCRHIRETSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRR 121 Query: 119 LKVSNNRAETGPI---------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163 + R T P R DG +G PL E ++ Sbjct: 122 VATGGQRV-TAPDGATYAFAGWLLKTQERTLVDG-----EGVALPLSTAEYNLMLAFATR 175 Query: 164 RGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201 + +++ Q+ G FD A +++ IS+LRKK+ Sbjct: 176 PNQVLSRDQLLDITQGREANAFDRA-----IDNQISRLRKKI 212 >gi|284051075|ref|ZP_06381285.1| multi-component transcriptional regulator [Arthrospira platensis str. Paraca] Length = 587 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 86/169 (50%), Gaps = 16/169 (9%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + L R +R+H+ Q+P++ ++ S + + D+G DD + KPI E++AR+ A+ RR Sbjct: 60 IALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRA 119 Query: 120 KVSNNRAETGPIRVFSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +S P+ + D +P Q V PL +E ++E + + + + I Sbjct: 120 TIS-----LPPVIHWRDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 ++ + +E +N V +HI LR KL++ G DP +++ +GY I Sbjct: 175 IEHLWSI-EEPAADNTVRAHIKSLRNKLKDA-GGDPKLIENVYGIGYRI 221 >gi|253690600|ref|YP_003019790.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757178|gb|ACT15254.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 220 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 11/205 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D L+ DG A G++ GFN F E +A + +A ++ + Sbjct: 3 ILLIEDDRLIGDGLKA-----GLNKLGFNIDWFTEGKAGAAALKAAPYDAVVLDLSLPGM 57 Query: 62 ELPRIIRAHSQV----PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 + I+R Q P++ ++ +L+ ++ G DD + KP E+ AR+ A+ R Sbjct: 58 DGMDILRQWRQAGHDEPVLILTARDALEQRVEGLQQGADDYLCKPFALTEVAARLQALIR 117 Query: 118 RLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R A T G + + R + E L RE +LE + N + + + Q+ Sbjct: 118 RRHGQLQPALTHGAVSLEPGSRSVTLNNEPLILKSRELALLELFLLNPNRVLTRAQLEEK 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 +YG +D+ V N VE HI LRKKL Sbjct: 178 LYG-WDDDVSSNAVEVHIHHLRKKL 201 >gi|158423577|ref|YP_001524869.1| response regulator receiver [Azorhizobium caulinodans ORS 571] gi|158330466|dbj|BAF87951.1| response regulator receiver [Azorhizobium caulinodans ORS 571] Length = 220 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 8/152 (5%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGP 130 + P++ ++ ++ + D G DD + KP +RE+ AR A+ RR S+N GP Sbjct: 72 RTPVLVLTARSAVDDRISALDLGADDYLIKPFDYRELEARARALLRRAAGQSDNLLRLGP 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + GR V+G+ L RRE +LE L + G+ V K ++ ++ FD+ N V Sbjct: 132 LTIDRAGRTASVEGKALDLTRRELTVLEILASRPGRFVPKEELVEQLFS-FDQDPSPNAV 190 Query: 191 ESHISKLRKKLRNKLGFDPVD--SKRFLGYSI 220 E +++LR+ KL PV+ ++R LGY + Sbjct: 191 EQFVARLRR----KLAATPVEIRTERGLGYQL 218 >gi|57234870|ref|YP_181048.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57225318|gb|AAW40375.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] Length = 225 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 71/137 (51%), Gaps = 3/137 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125 IRA S +P++ ++ + Q F+ G DD + KP E++ARV ++ +RL K S + Sbjct: 68 IRAFSSLPILILTARNNEQEIFTAFELGADDYITKPFQPLELIARVKSLLKRLNKTSQDL 127 Query: 126 A-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + G R + ++ + L E ++L L++ G V+ I +I+G +E Sbjct: 128 GIKYGHWRFGNSLKEISYKNNRVNLTVTEGQLLHILLSKTGSTVSYADISKSIWGR-NEY 186 Query: 185 VEENVVESHISKLRKKL 201 + +++HI ++R+KL Sbjct: 187 YAKETIKTHIMRIRQKL 203 >gi|37676469|ref|NP_936865.1| response regulator [Vibrio vulnificus YJ016] gi|37201011|dbj|BAC96835.1| response regulator [Vibrio vulnificus YJ016] Length = 232 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 85/168 (50%), Gaps = 10/168 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ + LP + + VP+I ++ +++ + DSG +D + KP E+ AR+ A Sbjct: 69 GDSISHLPGWKKTKN-VPVILLTALVTVKDKVAGLDSGANDYLTKPFAEAELFARIRAQL 127 Query: 117 RRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R + S+++ ET + + R+ +GE L R E +L +L +N G+ + + Sbjct: 128 RSPESSEQGSSDKVETENLVIDKSTREVFFKGEQITLTRTEFDLLLFLASNLGRVFTRDE 187 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G ++ V +H+ +LR+KL G + +++ R +GY + Sbjct: 188 LLDHVWG-YNHFPTTRTVNTHVLQLRQKLA---GLE-IETLRGVGYKM 230 >gi|319944908|ref|ZP_08019170.1| two component response regulator [Lautropia mirabilis ATCC 51599] gi|319741478|gb|EFV93903.1| two component response regulator [Lautropia mirabilis ATCC 51599] Length = 221 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 8/167 (4%) Query: 57 GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G LE+ R IR+ + +P++ ++ +L + D+G DD + KP E+LAR+ A+ Sbjct: 56 GRDGLEVLRSIRSQPTTLPVLIVTARDALDDRIAGLDAGADDYILKPFEISELLARMRAV 115 Query: 116 YRRLKVSNNRAETGPIRVFSDG-RDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQI 173 RR N + + + QG+ L RE +L LM G +++ + Sbjct: 116 LRRQGGQANPILSSALLTLDPATHEASRQGQPTVRLSNREFALLHALMQRPGAILSRADL 175 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 IYG + + VE N +E I LRK KLG + + + R G+ + Sbjct: 176 EDRIYG-WGQEVESNAIEYLIHSLRK----KLGSEAIRNIRGAGWMV 217 >gi|309776750|ref|ZP_07671724.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308915498|gb|EFP61264.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 217 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 9/148 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKV 121 R IR VP++ +S L+ ++ G DD + KP+ + + ++ A+ +R L+ Sbjct: 65 RRIREQQAVPILIMSARKDRSDQLNGYELGADDYIEKPVDPQILAVKIRAVLQRTNDLQA 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + +G I + D + G L +E +L L++N GK + K IF+ I+G+ Sbjct: 125 KKSCSCSG-ILIERDKHRASLNGNELELTGKEFELLSLLVSNAGKTLRKEYIFARIWGM- 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP 209 D E+ + HI K LR+K+ DP Sbjct: 183 DSFSEQQTLTVHI----KMLRDKIEKDP 206 >gi|260881100|ref|ZP_05403616.2| transcriptional activator protein Irlr [Mitsuokella multacida DSM 20544] gi|260849516|gb|EEX69523.1| transcriptional activator protein Irlr [Mitsuokella multacida DSM 20544] Length = 226 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 3/141 (2%) Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDP 140 S++ + D+G DD + KP E++AR+ A+ RR K+ + E G + + Sbjct: 84 SVEDRVTGLDAGADDYLVKPFEFAELMARLRALGRRSTQKIQQDVVEVGEFTLNRTAKVL 143 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 + + +V L RE +I + L N G V + I I+GL + V N ++S++ LRKK Sbjct: 144 KKKDKVIQLSPREFQIFDLLAQNIGIVVPRDIILDRIWGL-ESDVSSNNIDSYMKILRKK 202 Query: 201 LRNKLGFDPVDSKRFLGYSID 221 L G + + R +GY ++ Sbjct: 203 LDLGDGGTVIKTVRGVGYKLE 223 >gi|206580423|ref|YP_002239584.1| transcriptional regulatory protein BasR [Klebsiella pneumoniae 342] gi|288936427|ref|YP_003440486.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|290510517|ref|ZP_06549887.1| transcriptional regulatory protein basR/pmrA [Klebsiella sp. 1_1_55] gi|206569481|gb|ACI11257.1| transcriptional regulatory protein BasR [Klebsiella pneumoniae 342] gi|288891136|gb|ADC59454.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289777233|gb|EFD85231.1| transcriptional regulatory protein basR/pmrA [Klebsiella sp. 1_1_55] Length = 223 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D AL+ G I +G +G ++ E S A S I L E L Sbjct: 3 ILVIEDDALLLQGLILAMQSEGYVCDGVST--AHEAALSLASNHYSLIVLDLGLPDEDGL 60 Query: 62 E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 L R+ R P++ ++ +L+ + D+G DD + KP E+ AR+ A+ RR Sbjct: 61 HFLTRMRREKMTQPVLILTARDTLEDRISGLDTGADDYLVKPFALEELNARIRALLRRHN 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N G +R+ R + L +E +L LM G V + +++ IY Sbjct: 121 NQGDNEISVGDLRLNVTRRLVWLGETALELTPKEYALLSRLMMKAGSPVHREILYNDIYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D N +E HI LR+ K+G + + R GY + Sbjct: 181 -WDNEPATNTLEVHIHNLRE----KIGKSRIRTVRGFGYML 216 >gi|148545276|ref|YP_001265378.1| two component heavy metal response transcriptional regulator [Pseudomonas putida F1] gi|167031040|ref|YP_001666271.1| two component heavy metal response transcriptional regulator [Pseudomonas putida GB-1] gi|170719204|ref|YP_001746892.1| two component heavy metal response transcriptional regulator [Pseudomonas putida W619] gi|148509334|gb|ABQ76194.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|166857528|gb|ABY95935.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida GB-1] gi|169757207|gb|ACA70523.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 225 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 83/166 (50%), Gaps = 10/166 (6%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R++RA +VP++ ++ + + + G DD + KP E+LARV + RR Sbjct: 61 EVLRMVRAAGKEVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRR-- 118 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S+ A+T + V R G+ L +E +LE LM RG+ + K+ I S Sbjct: 119 GSSGYAQTTMKMADLEVDLLKRRATRNGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQ 178 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + FD + NV+E + +LR K+ + + + R +GY +D Sbjct: 179 VWDMNFDS--DTNVIEVAVRRLRAKIDDDFAPKLIHTVRGMGYLMD 222 >gi|223932940|ref|ZP_03624935.1| two component transcriptional regulator, winged helix family [Streptococcus suis 89/1591] gi|253752347|ref|YP_003025488.1| response regulator protein [Streptococcus suis SC84] gi|253754173|ref|YP_003027314.1| response regulator protein [Streptococcus suis P1/7] gi|253756107|ref|YP_003029247.1| response regulator protein [Streptococcus suis BM407] gi|302024297|ref|ZP_07249508.1| response regulator protein [Streptococcus suis 05HAS68] gi|330833284|ref|YP_004402109.1| winged helix family two component transcriptional regulator [Streptococcus suis ST3] gi|56684580|gb|AAW21991.1| two-component regulator [Streptococcus suis] gi|223898386|gb|EEF64752.1| two component transcriptional regulator, winged helix family [Streptococcus suis 89/1591] gi|251816636|emb|CAZ52276.1| response regulator protein [Streptococcus suis SC84] gi|251818571|emb|CAZ56404.1| response regulator protein [Streptococcus suis BM407] gi|251820419|emb|CAR47066.1| response regulator protein [Streptococcus suis P1/7] gi|292558947|gb|ADE31948.1| two-component regulator [Streptococcus suis GZ1] gi|319758749|gb|ADV70691.1| two component transcriptional regulator, winged helix family [Streptococcus suis JS14] gi|329307507|gb|AEB81923.1| two component transcriptional regulator, winged helix family [Streptococcus suis ST3] Length = 216 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 3/141 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR SQ+P++ ++ T L F+ + D V KP ++ R+ I R K Sbjct: 61 LEVLKEIRKTSQIPILMLTAMGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRG-K 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E G I + ++ E L ++E +L YL RGK V++ + I+G Sbjct: 120 GETDSIEIGTILIQPTSGAVYMEEEEVQLTKKEYEVLLYLAKRRGKIVSRDNLMMGIWGY 179 Query: 181 FDEAVEENVVESHISKLRKKL 201 + ++ V+++HI +RKKL Sbjct: 180 TE--LDSRVLDNHIKNIRKKL 198 >gi|295694966|ref|YP_003588204.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295410568|gb|ADG05060.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 234 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 8/146 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IRAH+ VP++ ++ + G DD V KP RE++AR+ AI RR+ Sbjct: 66 ELCKKIRAHTSVPILMLTAKAGETDRIRGLSLGADDYVTKPFSPRELVARIQAILRRVSP 125 Query: 122 SNNRAETGPIR----VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 A+T R V GR EV +G + PL E R+L L + + + + + Sbjct: 126 EELLADTVTFRNGELVIDAGRQ-EVYRKGVLVPLTPFEYRLLLTLARHPDRPLTREDLIL 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 + G FD + ++ HI LR+K+ Sbjct: 185 KLGG-FDYEGDVRTIDQHIKNLRQKI 209 >gi|226304476|ref|YP_002764434.1| two-component response regulator PhoP [Rhodococcus erythropolis PR4] gi|226183591|dbj|BAH31695.1| two-component response regulator PhoP [Rhodococcus erythropolis PR4] Length = 243 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 10/163 (6%) Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 L R +RA P++ ++ SL + G DD V KP E++ R+ I RR Sbjct: 77 LLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGR 136 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + R + I + D R+ +GE+ L E +L Y M N G ++K +I Sbjct: 137 GVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSKPRILDH 196 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 ++ +D E VVES++S LR+K+ G P + + R +GY Sbjct: 197 VWN-YDFGGEVGVVESYVSYLRRKVDT--GETPLIHTLRGVGY 236 >gi|222151944|ref|YP_002561104.1| hypothetical protein MCCL_1701 [Macrococcus caseolyticus JCSC5402] gi|222121073|dbj|BAH18408.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 219 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 1/134 (0%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 I+ H+ +I I+ L+ ++ G DD + KP + E+LARV R ++ ++ Sbjct: 66 IKHHTNTKVIIITAKHELEHKVNLLTLGADDYITKPFYQEEVLARVMVQLRNIEKGSSLI 125 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 +++ ++ R+ + + L E IL LM + ++K +IF+A+ G + Sbjct: 126 THRALKLDTEKREVTLNDKGIQLTNSEFDILTILMKHPEVPLSKQKIFNAL-GNGTYVGD 184 Query: 187 ENVVESHISKLRKK 200 +N V H+S +RKK Sbjct: 185 DNTVSVHVSNIRKK 198 >gi|212703723|ref|ZP_03311851.1| hypothetical protein DESPIG_01771 [Desulfovibrio piger ATCC 29098] gi|212672875|gb|EEB33358.1| hypothetical protein DESPIG_01771 [Desulfovibrio piger ATCC 29098] Length = 254 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 12/193 (6%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 E+L+ R S I ++ G LEL R +RA S VP+I ++ + + + G Sbjct: 39 EFLEIQRRVPCSLIVMDIMLPGMNGLELFRNLRAESTVPVIFLTALGDITDRIVGLELGA 98 Query: 96 DDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQ------GEVF 147 DD ++KP RE+LAR+ + RR + ++ ET P++ D + G V Sbjct: 99 DDYLSKPFEPRELLARIRTVLRRTEGGARRDQPETTPLQFAGWLLDRSARHLVAPDGVVV 158 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E R+LE + N + +++ ++ G + + ++ IS+LR +LR+ G Sbjct: 159 SLSGTEYRLLEIFLQNPQRVLSRDELLERTQG-RNAVPYDRSIDVQISRLRTRLRDN-GR 216 Query: 208 DP--VDSKRFLGY 218 +P + + R GY Sbjct: 217 EPQLIKTVRGDGY 229 >gi|167836227|ref|ZP_02463110.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia thailandensis MSMB43] Length = 233 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 15/159 (9%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122 +P+I ++ Q + + G DD V KP +E++AR+ A+ RR + ++ Sbjct: 76 HIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRAPQLTEDVVSIN 135 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 R + RV + G E++ ++ P E R+L + M + + ++TQ+ ++G D Sbjct: 136 GLRLDPATHRVAAQGDGSEIKLDLGPT---EFRLLHFFMTHPERVHSRTQLLDQVWG--D 190 Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 VEE V+ HI +LR L+ +++ R GY + Sbjct: 191 HVFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229 >gi|71906343|ref|YP_283930.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] gi|71845964|gb|AAZ45460.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] Length = 226 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 12/150 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +E+ R IRA S VP++ ++ + + G DD V KP RE+ AR+ AI RR Sbjct: 61 IEVLRRIRAVSNVPVLMLTAKGDDMDRIVGLELGADDYVPKPCQPRELAARLRAILRRTT 120 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ ++ GP+ V+ + R E G + E ++E L N G+ V+K + Sbjct: 121 LVEAASGPIVAGPLTVYPEQRRVEWGGAPVDMTSTEFNLVEVLARNAGRPVSKGLLCEQA 180 Query: 178 YG----LFDEAVEENVVESHISKLRKKLRN 203 G FD + ++ H+S +R KL N Sbjct: 181 LGRPLARFDRS-----IDVHLSSIRHKLGN 205 >gi|66046356|ref|YP_236197.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|302184957|ref|ZP_07261630.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae 642] gi|63257063|gb|AAY38159.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|330954638|gb|EGH54898.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae Cit 7] gi|330972829|gb|EGH72895.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 227 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 6/152 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETG 129 P++ IS + + +G DD + KP E+ ARV + RR + + + Sbjct: 74 TPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNPVSAAKTVLQVA 133 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 + + R+ GE L E ++LE+LM N G+ + + IF ++G FD N Sbjct: 134 DLELNLITREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEVWGYHFDPGT--N 191 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ HI +LRKK+ + + R GY I Sbjct: 192 LIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223 >gi|186682106|ref|YP_001865302.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464558|gb|ACC80359.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 226 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 23/172 (13%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA S VP+I ++ + + D+G DD V KP E+LAR+ A RR Sbjct: 62 LEICRRLRATGSTVPVILLTAKDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRT 121 Query: 120 K-----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + +S NR VF + R E+ + F L LEYL+++ + Sbjct: 122 QETAEDLLQFEDLSLNRRTR---EVFREKRSIELTAKEFDL-------LEYLLSHPRQVF 171 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + QI ++G +D + N++E +I LR KL + + R +GY++ Sbjct: 172 TRDQILEKVWG-YDFMGDSNIIEVYIRYLRLKLEENNEKRLIHTVRGVGYAL 222 >gi|329849000|ref|ZP_08264028.1| response regulator [Asticcacaulis biprosthecum C19] gi|328844063|gb|EGF93632.1| response regulator [Asticcacaulis biprosthecum C19] Length = 234 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 11/164 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+ A + P++ +S + + + G DD + KP E+ AR+ A+ RR S Sbjct: 66 ITRLRSAGVETPILMLSALSRSENRSEGLEGGADDYLGKPFEDHELTARIRALLRR---S 122 Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N+ + G I + R QG L +E IL+ LM + G V + + + Sbjct: 123 RNQVHSAVMLYGDIELHVKSRTAHRQGVHLALSPKEFEILKLLMEHAGDIVTRDMLLKEV 182 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + L FD + NV++ ++S+LR +L + +++ R G+ + Sbjct: 183 WHLNFDP--QTNVIDVNMSRLRHRLEDDFATPCLETVRGAGFRL 224 >gi|326571623|gb|EGE21638.1| two-component system response regulator [Moraxella catarrhalis BC7] Length = 237 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 10/164 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G L + R +RAH Q P++ ++ + + G DD V KP+ R +LAR+ A+ Sbjct: 64 GSDGLAVCREVRAHYQQPILMLTARTDDMDQVLGLEMGADDYVAKPVQPRVLLARIRALL 123 Query: 117 RR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR S R E G + + + GR + E+ E +L L +N G+ +++ Sbjct: 124 RRSDTVPSDTSPQRLEFGDLVIDNGGRSVTLNDELVDFTSAEYDLLWLLASNAGRILSRE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 IF + G+ + ++ ++ IS++R K+G D + KR Sbjct: 184 DIFERLRGIEYDG-QDRSIDVRISRIRP----KIGDDSENPKRI 222 >gi|328542823|ref|YP_004302932.1| transcription regulator protein [polymorphum gilvum SL003B-26A1] gi|326412569|gb|ADZ69632.1| Putative transcription regulator protein [Polymorphum gilvum SL003B-26A1] Length = 233 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 18/230 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + ++D + D G + + + D+ ++ + GE L Sbjct: 14 LLLVDDDSRIRDLLSRVLRDSGYRVTSAANAAEARRCMAGLEFDLLILDVMM--PGETGL 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R IR + VP++ ++ + + G DD + KP RE++ R+AAI RR Sbjct: 72 DLARTIRRENTVPILMLTARSDAADRIAGLEVGADDYLAKPFEPRELMLRIAAILRR--G 129 Query: 122 SNNRAETGP-IR----VFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFS 175 R E P IR VF R +GE L RE++IL G V + +I Sbjct: 130 GQRRTERTPEIRFGPFVFIAERGELRRGEASIRLTDREKQILSIFAEQPGATVPRHKIVG 189 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGYSIDWN 223 D + E V+ I++LR+K+ +PV + R +GY + + Sbjct: 190 D-----DSGLGERTVDVQINRLRRKIETDPS-NPVFLQTVRGIGYRLACD 233 >gi|289625552|ref|ZP_06458506.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650888|ref|ZP_06482231.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|298487477|ref|ZP_07005521.1| DNA-binding response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157992|gb|EFH99068.1| DNA-binding response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866911|gb|EGH01620.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 227 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 6/152 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETG 129 P++ IS + + +G DD + KP E+ ARV + RR + + Sbjct: 74 TPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNPVSAGKTVLQVA 133 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 + + R+ GE L E ++LE+LM N G+ + + IF ++G FD N Sbjct: 134 DLELNLISREACRGGEPLTLLPTEFKLLEFLMRNSGQIITRMMIFQEVWGYHFDPGT--N 191 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ HI +LRKK+ + + R GY I Sbjct: 192 LIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223 >gi|291285833|ref|YP_003502651.1| DNA-binding response regulator CreB [Escherichia coli O55:H7 str. CB9615] gi|209748784|gb|ACI72699.1| catabolic regulation response regulator [Escherichia coli] gi|290765706|gb|ADD59667.1| DNA-binding response regulator CreB [Escherichia coli O55:H7 str. CB9615] gi|320660297|gb|EFX27801.1| DNA-binding response regulator CreB [Escherichia coli O55:H7 str. USDA 5905] Length = 229 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G ++E F E + AR+ V + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFAVEVF---ERGLPVLDKARQQVPDVMILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 + + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ + Sbjct: 125 FSTPSPVIRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDIV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V +HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRTVY-THIKTLRAKLRAINPDLSPINTHRGMGYSL 226 >gi|212697066|ref|ZP_03305194.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM 7454] gi|212675841|gb|EEB35448.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM 7454] Length = 240 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 13/184 (7%) Query: 29 FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTL 88 F + + +E L+ ED+ + L+ +L + IR S VP+I ++ S + Sbjct: 34 FQAFDGKEGLEIFESEDIDLVLLDLMIPKISGEDLIKEIRNKSNVPVIMVTAKVSEDDIV 93 Query: 89 DFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIRVFSDGR---DPEVQ- 143 + G DD V KP +E++ R+ + RR++ N RA+ I +DGR D E Sbjct: 94 NGLKLGADDYVTKPFSPKELMQRIKTVLRRIEKYNIPRAD---IIKTTDGRLEMDLEYNR 150 Query: 144 ----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 GE L + E +I++ L +N K + +I +G FD + +++HI +R+ Sbjct: 151 FFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEIIEITFG-FDYDAYDRAIDTHIKNIRQ 209 Query: 200 KLRN 203 K+ + Sbjct: 210 KIED 213 >gi|254421333|ref|ZP_05035051.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188822|gb|EDX83786.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 257 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 103/223 (46%), Gaps = 21/223 (9%) Query: 3 VLIDDRALVKDGYIALFGDDG----VSLEGFNSLEF-EEWLQSSARE-------DVSAIE 50 +L++D L+++ D+G V+ G +LE ++ S E D+S I Sbjct: 21 LLVEDEELIRETVALSLADEGFEVCVADNGQRALEMILGGIERSGAEKPQPVAPDISLII 80 Query: 51 AFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109 L+ G L+L R++R +P++ +S + + + G DD + KP RE++ Sbjct: 81 LDLMLPGMNGLDLCRLVRHQGIDIPILILSAKGTETDRVLGLEVGADDYLTKPFGIRELI 140 Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMAN 163 AR A+ RR + + E +R F+D + VF L +E +ILE L++ Sbjct: 141 ARCRALLRRCQSQDKPNEKSILR-FADIALHTDECRVFLGSTEVSLSPKEFKILELLLSQ 199 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 + ++ QI ++G +D + V+ HI LR+KL G Sbjct: 200 PKRVWSRNQIIDQVWG-YDFMGDNKTVDVHIRWLREKLEENPG 241 >gi|162139597|ref|YP_216033.2| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714084|gb|EFZ05655.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 226 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 96/214 (44%), Gaps = 14/214 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + L + GY+ + DG + L + +E S I ++ G ++ R + Sbjct: 18 QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 66 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R Q P I ++ S++ + ++G +D + KP E+LARV A R+ R Sbjct: 67 RTAHQSPAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 126 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 + + + + G+ L R+E +L L + G+ V +T I S ++G+ FD E Sbjct: 127 INGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 184 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N V+ I +LR K+ + + + R +GY + Sbjct: 185 TNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218 >gi|219848261|ref|YP_002462694.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542520|gb|ACL24258.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 225 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 14/212 (6%) Query: 16 IALFGDDGVSLEG------FNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRIIR 68 IA + G+SLEG F+ L+ E + S+ D+ ++ L + G E+ R IR Sbjct: 13 IASYLRRGLSLEGYHVDVAFDGLQGLE-MASTGNYDLVVLDLMLPVIDG---FEVARRIR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A S VP+I ++ +++ + ++G DD + KP E+LAR+ A RR + ++ Sbjct: 69 AASNVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRRQQTYQHQEVL 128 Query: 129 GPIRVFSDGRDPE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + D R E V L +E +LE M + + + + I+ ++ +D E Sbjct: 129 RFANLTLDTRSRELRVGDRRVELTAKEYDLLELFMRHPNQVLTRDVIYDRVWN-YDFGGE 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 N++E ++ LR+KL + + R +GY Sbjct: 188 SNIIEVYVRYLRQKLEANGEPRLIHTVRSVGY 219 >gi|332876711|ref|ZP_08444469.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685270|gb|EGJ58109.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 232 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 5/149 (3%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G K+ ++ + +R +P+I ++ + + F G DD ++KP RE+ R+ A+ Sbjct: 62 GFKMAKMLKQVRETRDIPIIFLTARDTENDAVTGFTLGADDYISKPFSLREVQMRIKAVL 121 Query: 117 RRLKVSNN--RAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR A G +++ + ++ + GE L + E IL L+ N G+ ++ + Sbjct: 122 RRTAPQQAVPAAYIGFKELKLDLNKKEAVLCGEALQLTKTEFEILRLLLENEGRVFSRAE 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I I+ D V + V+ +I++LRKKL Sbjct: 182 ILRRIWN-NDAEVLDRTVDVNITRLRKKL 209 >gi|325924405|ref|ZP_08185939.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325545115|gb|EGD16435.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 233 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 12/135 (8%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ ++ ++ + D G DD + KP RE AR + RR NR + + Sbjct: 73 TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRR-----NRGQASEVV 127 Query: 133 -----VFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 VF + + G LP RE R+ E L+ G+ V K +I + ++G FD+ Sbjct: 128 QIGGFVFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNGLFG-FDDDAG 186 Query: 187 ENVVESHISKLRKKL 201 N +E ++ +LR+KL Sbjct: 187 PNAIELYVGRLRRKL 201 >gi|251779734|ref|ZP_04822654.1| two component transcriptional regulator, winged helix family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084049|gb|EES49939.1| two component transcriptional regulator, winged helix family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 224 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I S + + G DD + KP I+A+V A+ RR + Sbjct: 67 IRKISKVPIIFASSASDNMNLIMAINMGADDFIAKPFDLNVIVAKVQALIRR-----TYS 121 Query: 127 ETGPIRVF-SDGR-----DPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G I + S+G D + + L + E +IL+ L+ N+ K V++ I + ++ Sbjct: 122 FQGQINILESNGAVLNLGDTTIAYNNKKLELSKNEFKILQILLENKNKAVSRDDIMTHLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +++N + ++++LR+KL + D + +K+ +GY Sbjct: 182 N-SDSFIDDNTLTVNVTRLRRKLEDINLKDFIKTKKGMGY 220 >gi|229845243|ref|ZP_04465376.1| transcriptional regulatory protein [Haemophilus influenzae 6P18H1] gi|229847329|ref|ZP_04467431.1| transcriptional regulatory protein [Haemophilus influenzae 7P49H1] gi|229809754|gb|EEP45478.1| transcriptional regulatory protein [Haemophilus influenzae 7P49H1] gi|229811838|gb|EEP47534.1| transcriptional regulatory protein [Haemophilus influenzae 6P18H1] Length = 221 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNRAET 128 H VP++ ++ +L + SG DD + KP E+ AR+ A I RR ++ E Sbjct: 70 HQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRRYGHHHSVIEQ 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 +++ + R + + L RE ++LE M N+ + +++T I + +DE + Sbjct: 130 SGVKLDQNQRFVWLNNQPISLTSREYKLLELFMLNKDRVLSRTSIEEKLSS-WDEEISSG 188 Query: 189 VVESHISKLRKKL 201 ++ HI LR+KL Sbjct: 189 ALDVHIYNLRQKL 201 >gi|256420270|ref|YP_003120923.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256035178|gb|ACU58722.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 227 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/136 (23%), Positives = 74/136 (54%), Gaps = 6/136 (4%) Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQ 143 ++ +D + G DD + KPI + +++R+ A++RRL K + + + G + + + + Sbjct: 94 KSEIDGLNMGADDYIAKPIKPKLLVSRINALFRRLHKPEDTQVQLGDLIIDREKFTVTYK 153 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 G+ L ++E +L+ L + G+ + +I + ++G + V + ++ HI +K+R Sbjct: 154 GQEIILAKKEFELLQLLASKPGRVFLRNEILNQVWGT-EVIVGDRTIDVHI----RKIRQ 208 Query: 204 KLGFDPVDSKRFLGYS 219 K+G D + + + +GY Sbjct: 209 KIGIDLITTVKGVGYK 224 >gi|225569206|ref|ZP_03778231.1| hypothetical protein CLOHYLEM_05288 [Clostridium hylemonae DSM 15053] gi|225162005|gb|EEG74624.1| hypothetical protein CLOHYLEM_05288 [Clostridium hylemonae DSM 15053] Length = 220 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 3/153 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR+ + P++ ++ G DD + KP E+ ARV A RR Sbjct: 67 IRSGTDCPILFLTAKTGEGDITKGLGLGADDYITKPFGIGELRARVQAHLRRESRKRRHL 126 Query: 127 ET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 T G ++ + G+ P + E I EYL ++G+ +K +I+ I+G +++ Sbjct: 127 MTVGDMQFLPGEKKALCGGQEIPFTKSEYAICEYLALHQGQVFSKERIYEHIFG-YEKES 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + HI +R K + G P+++ +GY Sbjct: 186 DSTAITEHIKNIRAKCQPA-GISPIETVWGIGY 217 >gi|191637344|ref|YP_001986510.1| Putative lantibiotic resistance two-component response regulator [Lactobacillus casei BL23] gi|190711646|emb|CAQ65652.1| Putative lantibiotic resistance two-component response regulator [Lactobacillus casei BL23] gi|327381384|gb|AEA52860.1| Putative antibiotic transporter response regulator [Lactobacillus casei LC2W] gi|327384548|gb|AEA56022.1| Putative antibiotic transporter response regulator [Lactobacillus casei BD-II] Length = 232 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 4/155 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA + VP+I ++ + + + +G DD V KP E+ AR+ A +RR RA Sbjct: 75 IRAITLVPIIFLTARVTDEDKVRGLGAGGDDYVTKPFSLAELGARIKAHFRRESQPQKRA 134 Query: 127 ETGPI-RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 ++ D R +V +V L +++ +++E L N G+ ++ Q++ I+G +D Sbjct: 135 RMAIFDQILIDYRAKQVSIGDQVLSLEKKQYQLVELLSLNPGQVFSREQLYEKIWG-YDA 193 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ V+ HI ++R P+++ +GY Sbjct: 194 LGDDRVITEHIRRIRLLFDRYQVTSPIETVWGVGY 228 >gi|120401218|ref|YP_951047.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119954036|gb|ABM11041.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 244 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 79/153 (51%), Gaps = 4/153 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128 + +P+ +S ++ + ++G DD + KP E++AR+ A+ RR S+ ++T Sbjct: 89 NDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHSDPTSDTMT 148 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + + + R V GE L +RE +L L N G +++ ++ ++G +D V+ Sbjct: 149 VGSLTIDTARRLVFVAGERVELTKREFDLLAALAENAGVVLSRQRLLELVWG-YDFDVDT 207 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NV + +S LR+KL + + + R +GY + Sbjct: 208 NVADVFVSYLRRKLEREGLPRVIHTVRGIGYVL 240 >gi|322390235|ref|ZP_08063766.1| transcriptional regulatory protein CpxR [Streptococcus parasanguinis ATCC 903] gi|321143097|gb|EFX38544.1| transcriptional regulatory protein CpxR [Streptococcus parasanguinis ATCC 903] Length = 232 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/210 (26%), Positives = 98/210 (46%), Gaps = 18/210 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D +++ +L +D L+ F+ E Q A D+ ++ L GK G++V Sbjct: 7 ILLIEDNNDIQEILYSLLSEDHEVLQAFSGTEGLRLFQQEAV-DLVLLDIMLPGKNGDQV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE IR SQ P+I ++ + +G +D + KP + E+ ARV R Sbjct: 66 LE---EIRLQSQTPVIMMTALGDKHLISQYLLAGANDYIVKPFNLDEVAARVTVQLRNQP 122 Query: 121 VSNNRAETGPIRVFSD-GRDPEV----QGE-VFPLPRRERRILEYLMANRGKRVAKTQIF 174 A++ F + +PE GE L ++E +I E L+A+ K K +++ Sbjct: 123 TVAKEAQSSQKLSFKNLVLNPETFELESGEQTLRLGKKEFQIFETLLAHPKKIFTKEELY 182 Query: 175 SAIYGLFDEAVE---ENVVESHISKLRKKL 201 A++ E V +N + + +S LRKK+ Sbjct: 183 EAVW----EEVYLPGDNTLNAQLSNLRKKI 208 >gi|302340283|ref|YP_003805489.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] gi|301637468|gb|ADK82895.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] Length = 227 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 9/184 (4%) Query: 27 EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF++L+F EE L + +V I + G R + VP++ I+ S Sbjct: 20 EGFHTLDFGTAEEGLDYLKKNNVDIILVDINLPGMDGFMFISHARKLTSVPILIITARRS 79 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRD 139 + G DD + KP ++AR+ A RR + N E GP F D Sbjct: 80 DTDAVAGLGFGADDFITKPFSSEVLVARIRAFLRRAEGLENNNEKIITFGPFEFFPDDFV 139 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 + G+ PL E R+L YL+ GK I ++ +E + VV +I +LR+ Sbjct: 140 LKKDGDPIPLSNLECRLLAYLINRAGKYAKPEVIHKDVWK--NEFGDLTVVAVYIQRLRR 197 Query: 200 KLRN 203 K+ + Sbjct: 198 KIED 201 >gi|300313680|ref|YP_003777772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300076465|gb|ADJ65864.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 97/198 (48%), Gaps = 22/198 (11%) Query: 36 EWLQSSAREDVS------AIEAFLIGKGEK-VLELPRIIRAH-SQVPLIGISDYPSLQTT 87 +W+Q DV+ A+ +G +K L + R +R + +P++ + ++ Sbjct: 28 DWVQDGKSADVALRTEDYAMLLLDLGLPQKDGLAVLRTLRERGNAIPVLITTARDAVADR 87 Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP-----EV 142 + D+G DD + KP E+ AR+ A+ RR RAE+ ++V +P V Sbjct: 88 VAGLDAGADDYLIKPFDLEELSARMRALSRR---QAGRAES-LVQVREVILNPATHEVTV 143 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 G+ L RE +L+ M G +++ Q+ +YG +D+++E N VE HI LRK Sbjct: 144 SGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG-WDDSIESNAVEVHIHALRK--- 199 Query: 203 NKLGFDPVDSKRFLGYSI 220 K+G D + + R +GY + Sbjct: 200 -KVGSDFIKNVRGVGYLV 216 >gi|254823447|ref|ZP_05228448.1| two component response transcriptional regulatory protein MprA [Mycobacterium intracellulare ATCC 13950] Length = 228 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 97/200 (48%), Gaps = 21/200 (10%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R+L +GY DGV +LE L +S R D ++ + LE+ R + Sbjct: 18 RSLSFNGYSVELAHDGV-----EALE----LIASDRPDALVLDVMM--PRLDGLEVCRQL 66 Query: 68 RAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R+ +P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR K + A Sbjct: 67 RSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK-PEDEA 125 Query: 127 ETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E+ ++ FSD V EV L R E +LE L+AN + + +++I ++G Sbjct: 126 ESVAMK-FSDLTLDPVTREVTRGERRISLTRTEFALLEMLIANPRRVLTRSRILEEVWG- 183 Query: 181 FDEAVEENVVESHISKLRKK 200 FD N +E ++ LR+K Sbjct: 184 FDFPTSGNALEVYVGYLRRK 203 >gi|300774464|ref|ZP_07084327.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300506279|gb|EFK37414.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 235 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 20/160 (12%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ + IR +Q VP++ ++ + + + +SG DD + KP E++ARV ++ RR Sbjct: 61 LDVCKEIRKTNQSVPILFLTALGTSENIVLGLESGGDDYLVKPFKFIELVARVKSLLRR- 119 Query: 120 KVSNNR-----AETGP----IRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANR 164 SNN AE P + FSD + GE L E ++L Y + N Sbjct: 120 --SNNNGPQEIAEPEPDNEHVFQFSDLIVNDYTKKVTRGGEEISLTSTEYKLLLYFLNNP 177 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 K +++ +I A++G+ E + NVV+ +++ LRKKL N+ Sbjct: 178 EKVISRAEILDAVWGVNYE-LGTNVVDVYVNYLRKKLDNQ 216 >gi|225387649|ref|ZP_03757413.1| hypothetical protein CLOSTASPAR_01419 [Clostridium asparagiforme DSM 15981] gi|225046265|gb|EEG56511.1| hypothetical protein CLOSTASPAR_01419 [Clostridium asparagiforme DSM 15981] Length = 117 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 3/113 (2%) Query: 107 EILARVAAIYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 E++ R+ A+ RR ++ N +R GP+ + D GEV LPR+E +L L++ G Sbjct: 1 EMILRIKALLRRAQIVNEHRITLGPVVLDYDALTVSRGGEVQTLPRKEFYLLYKLLSYPG 60 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 K + Q+ I+G+ E+ ++N + H+++LR++ F +++ R LGY Sbjct: 61 KIFTRVQLMDEIWGMESES-DDNTINVHVNRLRRRFEGYPEFS-IETIRGLGY 111 >gi|126698221|ref|YP_001087118.1| two-component response regulator [Clostridium difficile 630] gi|255099750|ref|ZP_05328727.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|115249658|emb|CAJ67475.1| Two-component response regulator [Clostridium difficile] Length = 229 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 18/153 (11%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR+ S VP+I + S + + G DD + KP E+LAR+ A RR Sbjct: 60 FEVLKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRAT 119 Query: 121 V-SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 V S++R + + D G L E I++ L N+G+ +K Q+ Sbjct: 120 VYSSSRNSQDMVIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQL 179 Query: 174 FSAI-----YGLFDEAVEENVVESHISKLRKKL 201 ++AI YG ENV+ +HI++LR KL Sbjct: 180 YNAIWKEPYYG------NENVLNTHINRLRNKL 206 >gi|77745283|gb|ABB02542.1| response regulator [Lactobacillus reuteri] Length = 229 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 9/142 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124 +R S +P++ +S P+ + +G DD V KP + E++ARV ++ RR + V+N+ Sbjct: 67 VRKDSDIPILVLSAKPADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQGEVTND 126 Query: 125 RAE---TGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYG 179 + GP+ + D + + ++G+V L E IL YL+A+ RV + IF ++ Sbjct: 127 QPHILNVGPLLINKDSHEVKTIKGDVIQLTALEFGIL-YLLASHPNRVFSADDIFERVWQ 185 Query: 180 LFDEAVEENVVESHISKLRKKL 201 + V V H+S LR K+ Sbjct: 186 Q-ESVVSAKTVMVHVSHLRDKI 206 >gi|34496017|ref|NP_900232.1| phosphate regulon transcriptional regulatory protein phoB [Chromobacterium violaceum ATCC 12472] gi|34101870|gb|AAQ58238.1| phosphate regulon transcriptional regulatory protein phoB [Chromobacterium violaceum ATCC 12472] Length = 229 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETG 129 +P+I ++ Q + ++G DD + KP RE+LAR+ A+ RR +++++ + Sbjct: 76 HIPIIMLTARSDEQDKVAGLETGADDYITKPFSPRELLARIKAVLRRRAPQMTDDAVDVQ 135 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEEN 188 +R+ G V L E R+L + M + + ++ Q+ ++G D VEE Sbjct: 136 GLRLDPVTHRVTGNGSVIELGPTEFRLLHFFMTHPERVHSRAQLLDQVWG--DHVFVEER 193 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ HI +LR L + + R GY Sbjct: 194 TVDVHIRRLRSALEGTQHDGLIQTVRGTGY 223 >gi|117928813|ref|YP_873364.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649276|gb|ABK53378.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 230 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 11/145 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +++RA S+VP+I + + + D+G DD V KP + AR+ A+ RR Sbjct: 65 LIQMVRAVSKVPIIVATARDDEREMVRILDAGADDYVVKPFASDHLEARIRAVLRRTAAD 124 Query: 123 NNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI--- 177 G +R+ R+ + G L R+E +L YL + G+ V K I + + Sbjct: 125 GAMPPLVVGGLRIDRRSREATLDGRPLDLTRKEFDLLAYLAEHAGEVVTKRAILAEVWQQ 184 Query: 178 -YGLFDEAVEENVVESHISKLRKKL 201 YG D+ V+ H+S LR+KL Sbjct: 185 AYGGADK-----TVDVHLSWLRRKL 204 >gi|168205030|ref|ZP_02631035.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168212345|ref|ZP_02637970.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170663408|gb|EDT16091.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170716198|gb|EDT28380.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 226 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 79/165 (47%), Gaps = 7/165 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S+VP+I ++ ++ + D+G DD + KP E+LAR+ ++ + Sbjct: 61 LEVLRRIRRVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKK-R 119 Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFS 175 V + + IR R + G+ L RE +L+ LM N+ + + + Sbjct: 120 VFTVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G ++ E NV++ ++ LR K+ + + + R +GY I Sbjct: 180 KVCG-YNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVI 223 >gi|27466936|ref|NP_763573.1| response regulator [Staphylococcus epidermidis ATCC 12228] gi|57865896|ref|YP_190075.1| DNA-binding response regulator YycF [Staphylococcus epidermidis RP62A] gi|242243238|ref|ZP_04797683.1| response regulator [Staphylococcus epidermidis W23144] gi|251811382|ref|ZP_04825855.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282874739|ref|ZP_06283618.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293367563|ref|ZP_06614216.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|81672853|sp|Q5HK18|WALR_STAEQ RecName: Full=Transcriptional regulatory protein walR gi|81843200|sp|Q8CQK0|WALR_STAES RecName: Full=Transcriptional regulatory protein walR gi|27314478|gb|AAO03615.1|AE016744_18 response regulator [Staphylococcus epidermidis ATCC 12228] gi|57636554|gb|AAW53342.1| DNA-binding response regulator YycF [Staphylococcus epidermidis RP62A] gi|58003341|gb|AAW62233.1| two-component response regulator [Staphylococcus epidermidis] gi|242233187|gb|EES35499.1| response regulator [Staphylococcus epidermidis W23144] gi|251805131|gb|EES57788.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281296455|gb|EFA88970.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291318276|gb|EFE58669.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|319399899|gb|EFV88145.1| response regulator [Staphylococcus epidermidis FRI909] gi|329728490|gb|EGG64926.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis VCU144] gi|329735741|gb|EGG72022.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis VCU028] Length = 233 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 32/219 (14%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 D Y A G+D V L +EE D+ ++ L G+ +E+ R +R + Sbjct: 28 DVYCAYDGNDAVDLI------YEE------EPDIVLLDIMLPGRDG--MEVCREVRKKYE 73 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNN 124 +P+I ++ S + + G DD V KP RE++ARV A RR + + N Sbjct: 74 MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQPAQEVSGATN 133 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 I ++ D + +GE L RE + YL + G+ + + + ++G +D Sbjct: 134 EITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWG-YDYF 192 Query: 185 VEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 + V+ I +LR+K+ + DP + ++R +GY Sbjct: 193 GDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 227 >gi|147668757|ref|YP_001213575.1| two component transcriptional regulator [Dehalococcoides sp. BAV1] gi|146269705|gb|ABQ16697.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. BAV1] Length = 227 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%) Query: 67 IRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 IRA S+VP++ ++ + +SG D+ + KP H E+L+RV + RR + + Sbjct: 68 IRAFSSEVPVLILTVTNDEHCIVRALESGADEYIIKPFHQLELLSRVKVLLRRRLMDSEE 127 Query: 126 A--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 GP R+ V L E+ I+ +L++N G V T + AI+G + Sbjct: 128 VAINVGPFRLSKYSNTLMVDNRRLILTNTEKIIMSHLLSNAGNLVPATLLAEAIWG-HNY 186 Query: 184 AVEENVVESHISKLRKKL 201 ++ V HI +LR+K+ Sbjct: 187 TNAKDAVRVHIWRLRRKV 204 >gi|330836364|ref|YP_004411005.1| two component transcriptional regulator, winged helix family [Spirochaeta coccoides DSM 17374] gi|329748267|gb|AEC01623.1| two component transcriptional regulator, winged helix family [Spirochaeta coccoides DSM 17374] Length = 224 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/213 (23%), Positives = 99/213 (46%), Gaps = 13/213 (6%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ DG LE + LE +++ D++ I+ L+ EL + +RA Sbjct: 21 LQKEGFAVYEAADG--LEALSKLE-------TSKADLAIID--LMMPNMDGFELCQELRA 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128 +P++ ++ + F +G DD + KP E++ARV A+ +R + +++ + Sbjct: 70 SYDIPVLMLTAKGETAQKIKGFQAGADDYLVKPFEPLELMARVKALLKRYQIIASQNVQI 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + + F LP +E +L L G+ ++ + I+G E E Sbjct: 130 GKLMMNRKNYEVIAGNMKFTLPLKEFELLFKLAGYPGRTFSRDTLIEDIWGYGFEG-NER 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ HI++LR++ + + + R LGY ++ Sbjct: 189 TLDVHINRLRQRFPEEKTDFRITTIRGLGYRLE 221 >gi|307265495|ref|ZP_07547050.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919449|gb|EFN49668.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 225 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S +P+I ++ + + G DD + KP + RE++AR+ A+ RR Sbjct: 65 REIRTFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLRRATNPYT 124 Query: 125 RAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G + + R +G+ L +E IL L +N GK K ++ I+G Sbjct: 125 KRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLIWG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRN 203 FD + N V H+ KLR+K+ + Sbjct: 184 FDFYGDTNTVTVHVRKLREKIED 206 >gi|253581956|ref|ZP_04859180.1| transcription regulator [Fusobacterium varium ATCC 27725] gi|251836305|gb|EES64842.1| transcription regulator [Fusobacterium varium ATCC 27725] Length = 239 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 75/140 (53%), Gaps = 15/140 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLK------VSNNRAETGPIRV-FSDGRDPEVQGEV 146 G DD + KP REI+AR+ A RR++ ++N+ E + + D + ++ V Sbjct: 98 GADDYITKPFSLREIIARINAFSRRIESEISIDLNNHSLENNENYIYYKDLKIDLIKNIV 157 Query: 147 FP------LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 + L RE ++L +L+ N+GK +++ +IF +++ ++ + ++ HI KLR+K Sbjct: 158 YKNNNPLELTIRELKLLIFLLTNKGKVISREKIFESVWN-YENNNQTRSLDVHIRKLRQK 216 Query: 201 LRNKLGFDPVDSKRFLGYSI 220 L +K +++ R GY I Sbjct: 217 LGDK-NNSYIETIRGTGYKI 235 >gi|239816306|ref|YP_002945216.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239802883|gb|ACS19950.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 221 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 4/160 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L R+ ++P + ++ SL + ++G DD + KP E+ AR+ A+ RR + V Sbjct: 63 LQRLRERDQRLPALILTARDSLNERVASLNAGADDFLAKPFALAELEARLHALVRRARGV 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + R GP+ R + GE L RE+ +L L+ G+ ++K QI ++ Sbjct: 123 EHPRLACGPLAYDGARRQFVLGGEALALSPREQAVLRALVQRSGEPLSKQQILDRVFSDD 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE V VE + +LRK+L G V + R LGY ++ Sbjct: 183 DE-VHLEAVEVLVYRLRKRLDGS-GVRIV-TLRGLGYVLE 219 >gi|220907440|ref|YP_002482751.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219864051|gb|ACL44390.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 240 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 8/148 (5%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ + +R+ Q P++ ++ +L + D+G DD + KP RE+LARV A+ RR Sbjct: 73 LEICQWVRSQRQATPILMLTAKDTLDERVQGLDAGADDYLVKPFELRELLARVRALLRRT 132 Query: 120 KVSNNRAETGPIRVFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E+ + D D + Q G L +E ++LEYLM + ++ +I Sbjct: 133 AAIDEPTESHKMLKVDDLELDSQNQLAYRRGRAINLSEKESQLLEYLMTRSQQLLSHEEI 192 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 + ++ D+ NV+ + + LR+K+ Sbjct: 193 YQHLWPGEDKP-SSNVLAAQVRLLRRKI 219 >gi|196040633|ref|ZP_03107932.1| regulatory protein VanR [Bacillus cereus NVH0597-99] gi|196028423|gb|EDX67031.1| regulatory protein VanR [Bacillus cereus NVH0597-99] Length = 228 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123 IR +P+I +S + SG DD ++KP + E++ARV + RR K N Sbjct: 68 IREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKKYNTPI 127 Query: 124 --NRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N++ E G + V +D V+G+ L +E ILE L N+G ++ +I+ ++ Sbjct: 128 EYNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGSVLSVAKIYETVWK 187 Query: 180 -LFDEAVEENVVESHISKLRKKL 201 +F ++ +N V HI+K+R K+ Sbjct: 188 EVFYKS--DNTVMVHITKIRDKI 208 >gi|152994709|ref|YP_001339544.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150835633|gb|ABR69609.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 245 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 66/128 (51%), Gaps = 12/128 (9%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-----------LKVSNNRAETGPIRVFSDGRD 139 + G DD VNKPIH R +LARV A+ RR ++N++ +++ R Sbjct: 96 LEMGADDFVNKPIHPRVLLARVRALLRRDEKRANPLSPASTINNDQLIFDSLKINIGRRQ 155 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 E+ GE+ L E +L L +N K V++ +I ++ G+ + ++ + +++ I LRK Sbjct: 156 VELAGELIKLTETEFELLWLLASNPEKTVSRDEISQSLRGIEYDGLDRS-IDNKIVSLRK 214 Query: 200 KLRNKLGF 207 KL + G Sbjct: 215 KLGDSNGL 222 >gi|254975553|ref|ZP_05272025.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255092941|ref|ZP_05322419.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255314682|ref|ZP_05356265.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255517356|ref|ZP_05385032.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255650463|ref|ZP_05397365.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260683573|ref|YP_003214858.1| two-component response regulator [Clostridium difficile CD196] gi|260687233|ref|YP_003218367.1| two-component response regulator [Clostridium difficile R20291] gi|306520433|ref|ZP_07406780.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|260209736|emb|CBA63511.1| two-component response regulator [Clostridium difficile CD196] gi|260213250|emb|CBE04771.1| two-component response regulator [Clostridium difficile R20291] Length = 223 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/237 (26%), Positives = 110/237 (46%), Gaps = 34/237 (14%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLI-GKGE 58 ++I+D + +G F +DG ++ F + +E L +S D ++ L G G Sbjct: 3 LLIIEDDINLNEGLFYAFENDGFNV--FKAYTKQEGLNIFNSKNIDFIILDCNLPDGDG- 59 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++ +IIR S +P+I ++ S + + G+DD + KP + ARV R Sbjct: 60 --FDVCQIIREKSDIPIIMLTARDSEIDEVKGLEIGLDDYITKPFSLSVLKARVKVAIR- 116 Query: 119 LKVSNNRAETGPIRVFSDG--RDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKT 171 K SNN+ ++S+G D ++ L E ++L YL+ N+G+ + K Sbjct: 117 -KKSNNKV------IYSNGIKLDQKLLKVYKNKACLELSSVEYKLLSYLIENKGQILLKE 169 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSIDWN 223 QI I+ + V++N+V +I +LR K+ + DP + K +GY WN Sbjct: 170 QILHHIWDSEENYVDDNIVSVNIRRLRVKVED----DPSNPKYIKTAYGMGYL--WN 220 >gi|116494703|ref|YP_806437.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|116104853|gb|ABJ69995.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] Length = 225 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 12/159 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE VL IR S VP++ ++ Q T+ G +D + KP E+LARV Sbjct: 59 GESVLT---TIRKTSSVPVLVLTAIQDKQKTVALLQQGANDYLTKPFDIDELLARVQVQL 115 Query: 117 RRL-----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R++ + ++ + G I + V LP++E +L +M + + K Sbjct: 116 RQMLPAPSAKAQDQLQVGEITLNLKRHAVTVNNRPLTLPKKEYAMLALMMRDPHQVFDKQ 175 Query: 172 QIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDP 209 Q++ ++G F A +N + HIS LR K+ N L DP Sbjct: 176 QLYEHVWGEPFMNA--DNTLNVHISNLRTKI-NDLAKDP 211 >gi|67921356|ref|ZP_00514875.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67857473|gb|EAM52713.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 225 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/219 (26%), Positives = 109/219 (49%), Gaps = 11/219 (5%) Query: 10 LVKD-GYIALFGDDGVSLEGFNSLEFEEWLQ--SSARE---DVSAIEAFLIG-KGEKVLE 62 LV+D +A F + + EG+N + L S+ARE D+ ++ L G G + + Sbjct: 8 LVEDEAKLAQFIELELKYEGYNVTVVNDGLSGLSNARESDPDLILLDWMLPGMSGVDICK 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R+ + + VP+I ++ + + D+G DD + KP + E+LARV A RR + Sbjct: 68 --RLRQTGNNVPIILLTAKDDIGDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNQQD 125 Query: 123 N-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + E + + S+ R + L +E +LEYLM++ + + + QI ++G + Sbjct: 126 DPDLLEFLDLTLNSNTRQVFRGDRLIELTAKEFDLLEYLMSHPKQVLTRDQILERVWG-Y 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N++E ++ LR KL + + + R +GY + Sbjct: 185 DFMGDSNIIEVYVRYLRLKLEAEKEKRIIQTVRGVGYVL 223 >gi|330982818|gb|EGH80921.1| DNA-binding response regulator QseB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 137 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 12/135 (8%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEV 146 D+G DD + KP E+ ARV A+ RR S RA E I + + +G Sbjct: 8 LDAGADDYLIKPFDVDELKARVRALLRR---SQGRAQPLLEHAGISLDPASQQVSFKGSE 64 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 P+ E ++L LM GK V + ++ + +YG D+ VE N +E I LRKKL +L Sbjct: 65 VPMTPMEYQLLHQLMIRPGKVVTRERLSNTLYGWQDK-VESNTLEVLIHNLRKKLSTEL- 122 Query: 207 FDPVDSKRFLGYSID 221 + + R +GY ++ Sbjct: 123 ---IRTVRGVGYLLE 134 >gi|271501164|ref|YP_003334189.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270344719|gb|ACZ77484.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 231 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 25/222 (11%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAI--EAFLIGK-GEKVLELP 64 RAL + GY+ DG+ E L + + D AI + L GK G VLE Sbjct: 18 RALSELGYMVDIAADGI-----------EGLHLAVQYDYDAIILDVMLPGKDGYSVLE-- 64 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN- 123 +R H Q P++ +S S+ + G DD ++KP E++AR+ A+ RR +VS+ Sbjct: 65 -GLRLHKQTPVLMLSARGSVDERVKGLRHGADDYLSKPFSLIELVARIQALLRR-RVSDG 122 Query: 124 ---NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + R G+ L +E +L L ++G+ ++K I ++ + Sbjct: 123 ADVTQLHIDDMHLDLLARRVTRAGQRLELTAKEFALLSLLARHQGEILSKMMIAEQVWDM 182 Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + NVVE + +LR K+ + + R +GY ++ Sbjct: 183 NFDS--DANVVEVAVKRLRAKVDTPYTVKLLHTVRGMGYVLE 222 >gi|296137393|ref|YP_003644635.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295797515|gb|ADG32305.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 256 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 75/161 (46%), Gaps = 4/161 (2%) Query: 45 DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D ++ L G G VL R+ + P+I ++ + + +SG DD + KP+ Sbjct: 59 DACLLDWMLPGLSGPDVLCRLRLQLGANVPPVIFLTGRNAETDVVQALESGADDYLVKPL 118 Query: 104 HHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161 +LAR+ A+ RR + R G I S R V+GE L RE + + + Sbjct: 119 SRPVLLARLQAVLRRSGSTLPAARLRLGEIEADSSRRQIFVRGERVELTDRETDLALHFL 178 Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 N + + + + I+GL E VE V+ H+S LR+KLR Sbjct: 179 QNVNRLLTRDFLIQTIWGLRPE-VETRTVDVHVSALRRKLR 218 >gi|254563439|ref|YP_003070534.1| phoP: DNA-binding response regulator in two-component regulatory system with PhoQ [Methylobacterium extorquens DM4] gi|254270717|emb|CAX26722.1| putative phoP: DNA-binding response regulator in two-component regulatory system with PhoQ [Methylobacterium extorquens DM4] Length = 221 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A +P++ ++ + ++ D+G DD + KP E++AR+ AI RR Sbjct: 63 LRRLRGADVALPVLILTARDGWRERVEGIDAGADDYLVKPFRMEELVARLRAILRRTAGH 122 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + + + R V G L E R+L +L+ +G+ VA ++ ++G Sbjct: 123 ASPVLRAGAVELDTRTRAVSVAGRETDLTALEYRLLAFLLHRQGQVVAAGELLDHLHG-S 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D E N +E+ +++LR+ KLG ++++R GY + Sbjct: 182 DSDREANALEALLTRLRR----KLGPGIIETRRGHGYLV 216 >gi|238925262|ref|YP_002938779.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656] gi|238876938|gb|ACR76645.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656] gi|291524452|emb|CBK90039.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291527504|emb|CBK93090.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 233 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 10/152 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IRA S VP+I +S + + + G DD + KP +E++ARV A+ RR + Sbjct: 65 QVCREIRAKSDVPIIMLSAKGEVFDKVLGLELGADDYILKPFDSKELVARVKAVLRRFQP 124 Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + A E + V G+ +P +E +L +L ++ + + Q Sbjct: 125 AKPEAYASVDIKCVEYPGLIVNLSNYSVTYDGQQIDMPPKELELLYFLASSPNQVFTREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 + I+G ++ + V+ H+ +LR+K+++K Sbjct: 185 LLDNIWG-YEYVGDTRTVDVHVKRLREKIKDK 215 >gi|254283288|ref|ZP_04958256.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium NOR51-B] gi|219679491|gb|EED35840.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium NOR51-B] Length = 236 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 75/151 (49%), Gaps = 3/151 (1%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G ++L + A +P+I ++ + + + G DD + KP RE++AR+ A Sbjct: 60 GSGIELLRRLKRSEATRAIPVIMLTAKSAEDNVIQGLEVGADDYLTKPFAPRELVARIKA 119 Query: 115 IYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + RR + N R + + +DGR + + + E +L + M + + +++Q Sbjct: 120 LLRRSQGMEDNQRLAFEELLLDADGRRVYLADKPISMGPTEYNLLYFFMTHPERAYSRSQ 179 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G + VEE V+ HI +LRK L++ Sbjct: 180 LLDHVWGA-NVYVEERTVDVHIRRLRKALQS 209 >gi|212635395|ref|YP_002311920.1| transcriptional regulatory protein [Shewanella piezotolerans WP3] gi|212556879|gb|ACJ29333.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 234 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 15/158 (9%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----E 127 + P+I IS + Q ++ F+ G DD ++KP RE+L R+ AI RR+ + N + E Sbjct: 78 KTPVIVISSLDTEQDRVNVFELGADDFLSKPFSQRELLVRINAIKRRIALVRNESHLTDE 137 Query: 128 TGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ----IFSAIYGLFD 182 +F D + + + E ++ +YL +G VAK + + G FD Sbjct: 138 LAMDVLFDDSSYSVSISAKEVSFTQTEFKLFKYLFERKGNVVAKDELQLRVLQKELGQFD 197 Query: 183 EAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219 ++ HIS R+KL +L +++ R GYS Sbjct: 198 RN-----LDMHISNTRRKLAATQLPKSLINTVRGKGYS 230 >gi|163853512|ref|YP_001641555.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218532370|ref|YP_002423186.1| transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240140930|ref|YP_002965410.1| putative phoP: DNA-binding response regulator in two-component regulatory system with PhoQ [Methylobacterium extorquens AM1] gi|163665117|gb|ABY32484.1| response regulator receiver [Methylobacterium extorquens PA1] gi|218524673|gb|ACK85258.1| two component transcriptional regulator, winged helix family [Methylobacterium chloromethanicum CM4] gi|240010907|gb|ACS42133.1| putative phoP: DNA-binding response regulator in two-component regulatory system with PhoQ [Methylobacterium extorquens AM1] Length = 221 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A +P++ ++ + ++ D+G DD + KP E++AR+ AI RR Sbjct: 63 LRRLRGADVALPVLILTARDGWRERVEGIDAGADDYLVKPFRMEELVARLRAILRRTAGH 122 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + + + R V G L E R+L +L+ +G+ VA ++ ++G Sbjct: 123 ASPVLRAGAVELDTRTRAVSVAGRETDLTALEYRLLAFLLHRQGQVVAAGELLDHLHG-S 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D E N +E+ +++LR+ KLG ++++R GY + Sbjct: 182 DSDREANALEALLTRLRR----KLGPGIIETRRGHGYLV 216 >gi|315644732|ref|ZP_07897862.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315279882|gb|EFU43182.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 214 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 87/169 (51%), Gaps = 25/169 (14%) Query: 61 LELPRIIR--AHSQVPLI---GISD--YPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 +E+ R I+ H++V L+ G +D + +LQ SG DD V KP R +L R Sbjct: 60 IEVCRTIKQLGHTKVLLLTAKGEADDEFAALQ-------SGADDYVRKPFDPRILLLRA- 111 Query: 114 AIYRRLKVSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++L N + G + V + R + +V +E +++Y +AN+G+ +++ Sbjct: 112 ---KKLLHLNAKVVIGNVTVDLEEQRIYRGEQDVMA-THKEFELMKYFLANKGRILSRKM 167 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++G FD +E V++HI ++LR K+G + + R +GYS+D Sbjct: 168 LLDHVWG-FDYFGDERTVDTHI----RRLREKIGESCIQTHRGMGYSLD 211 >gi|229181171|ref|ZP_04308503.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|228602362|gb|EEK59851.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 74/150 (49%), Gaps = 13/150 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172 KV+ N++ E G + V + R V GE L +E IL YL+A+ K+V + Sbjct: 124 LNQPKVAENKSALEIGGVIVDPERRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 IF ++ D+ E N V HI LRKKL Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210 >gi|255283760|ref|ZP_05348315.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM 14469] gi|255265643|gb|EET58848.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM 14469] Length = 230 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 15/150 (10%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA + +P++ + + + +G DD + KP E++AR+ ++ RR N Sbjct: 67 IRAENSLPILMFTSKNDSASKVRGLRAGADDYLTKPFDMDELIARIVSLIRRYTRFNQPG 126 Query: 127 ETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 T P ++ DG R F LP +E IL + N+GK + K +I+ ++G Sbjct: 127 GT-PHQLHFDGLEIDLESRSVTTMNGTFELPPKEFDILLFCAKNQGKILTKQRIYEEVWG 185 Query: 180 ---LFDEAVEENVVESHISKLRKKLRNKLG 206 +D++ N++ + IS+LRKK+ G Sbjct: 186 GEYFYDDS---NIM-AIISRLRKKIEENPG 211 >gi|195978501|ref|YP_002123745.1| TCS response regulator VicR [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225870885|ref|YP_002746832.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|195975206|gb|ACG62732.1| TCS response regulator VicR [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700289|emb|CAW94550.1| response regulator protein [Streptococcus equi subsp. equi 4047] Length = 236 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S +P+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 61 LEVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120 Query: 121 -----VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 V+ A +G +++ D + G+ L RE +L +L + G+ + Sbjct: 121 TIETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVELTHREFELLHHLANHIGQVM 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ I +LR+K+ + Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTIRRLREKIED 214 >gi|182435528|ref|YP_001823247.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776165|ref|ZP_08235430.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178464044|dbj|BAG18564.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656498|gb|EGE41344.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 230 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 8/143 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + P+I ++ +++ + + G DD V KP E+LAR+ A+ RR + A Sbjct: 69 IRKRTATPVIMVTARADVRSRIHGLNLGADDYVTKPYDTGELLARIHAVARRTTSGEDTA 128 Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 T GP+ + R V G L R+E +L L G + QI S ++ Sbjct: 129 PTPVAALRLGPVAIELPTRRVSVDGAEVQLTRKEFDLLALLAQRPGVVFRREQIISEVWR 188 Query: 180 LFDEAVEENVVESHISKLRKKLR 202 E +E H++ LR KLR Sbjct: 189 TSWEGTGRT-LEVHVASLRSKLR 210 >gi|16331577|ref|NP_442305.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1001644|dbj|BAA10375.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 224 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 82/166 (49%), Gaps = 3/166 (1%) Query: 57 GEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G LEL R +R S++P+I I+ ++ + D+G DD + KP + E AR+ Sbjct: 58 GMSGLELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQ 117 Query: 116 YRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR +++ + +R R+ + + L +E +L+YL+++ + + + QI Sbjct: 118 LRRTHTTSDEVLQFADLRFNRSTREIQRGDRLIDLTAKEFELLDYLLSHARQVLTREQIL 177 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D + N++E +I LR KL + + R +GY + Sbjct: 178 ERVWG-YDFMGDSNIIEVYIRYLRLKLEAAGEPRLIQTVRGVGYVL 222 >gi|89096518|ref|ZP_01169410.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088533|gb|EAR67642.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 231 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 85/164 (51%), Gaps = 17/164 (10%) Query: 65 RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R+IR+ S VP+I +S D+P+ + G DD V KP H ++A++ AI RR+ Sbjct: 67 RMIRSGSNVPIIFLSSRDHPT--DMVMSMQLGADDFVQKPFHFEVLIAKIQAILRRVYSY 124 Query: 123 NN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G F G G V L + E IL+ L+ + K V + Q+ S+ Sbjct: 125 STDEVKLKTWCGAAIDFERGIVENETGRV-ELTKNEMFILKQLVEQKNKIVTRDQLISS- 182 Query: 178 YGLFDEA--VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 L+D+ + +N + +I++LRK+L +++G +++K +GY Sbjct: 183 --LWDDKRFISDNTLTVNINRLRKRL-DEIGLGSFIETKVGMGY 223 >gi|315659978|ref|ZP_07912836.1| response regulator [Staphylococcus lugdunensis M23590] gi|315494879|gb|EFU83216.1| response regulator [Staphylococcus lugdunensis M23590] Length = 238 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 32/219 (14%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 D Y A G+D V L +EE D+ ++ L G+ +E+ R +R + Sbjct: 33 DVYCAYDGNDAVDLI------YEE------EPDIVLLDIMLPGRDG--MEVCREVRKKFE 78 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNN 124 +P+I ++ S + + G DD V KP RE++ARV A RR + ++N Sbjct: 79 MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQPAQEVNNASN 138 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 I ++ D + +GE L RE + YL + G+ + + + ++G +D Sbjct: 139 EITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWG-YDYF 197 Query: 185 VEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 + V+ I +LR+K+ + DP + ++R +GY Sbjct: 198 GDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 232 >gi|297623124|ref|YP_003704558.1| winged helix family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164304|gb|ADI14015.1| two component transcriptional regulator, winged helix family [Truepera radiovictrix DSM 17093] Length = 223 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/218 (23%), Positives = 101/218 (46%), Gaps = 7/218 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D +V++ G ++E +LE E W + + V G G + L Sbjct: 6 LVVEDEFVVRELIAFHLTQAGFTVEEVGTLE-EAWRSLTGVDAVVLDWMLPDGSGVEWLR 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R ++P++ ++ S + + D+G DD + KP E+ AR+ A+ RR + Sbjct: 65 RLRATVRGERLPVLMLTARASERDKVFGLDAGADDYLAKPFSSAELTARLRALLRRTE-P 123 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + GP+ + + G L RRE +L +L A+ G+ ++T++ ++G D Sbjct: 124 QRVHKVGPLELDERLGVVTLNGRELSLTRREFELLAFLCASPGRVFSRTELLDRVWG-ED 182 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E V+ HI++LR +G + +++ R GY + Sbjct: 183 FLGTERTVDQHIAQLRA----LVGAELIETVRGRGYRL 216 >gi|291085390|ref|ZP_06352946.2| DNA-binding response regulator YycF [Citrobacter youngae ATCC 29220] gi|291070837|gb|EFE08946.1| DNA-binding response regulator YycF [Citrobacter youngae ATCC 29220] Length = 243 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 9/149 (6%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R IR S +P+I IS S + + G DD + KP E++ARV A++RR Sbjct: 67 LEICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRRQ 126 Query: 120 KV--SNNRAETGPIRVFSDGRDP---EV--QGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + N R E G + V DP EV G+ L RE +L + + G+ ++ Sbjct: 127 EAMSQNLRMEAGIVSVHGVEIDPLAREVRQHGKSIDLTPREFDLLYFFARHPGEVFSRQA 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + ++G E E+ V SHI++LR K+ Sbjct: 187 LLDQVWGYQHEGY-EHTVNSHINRLRTKI 214 >gi|262377412|ref|ZP_06070635.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] gi|262307642|gb|EEY88782.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] Length = 237 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 14/145 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S VP+I +S + + + D+G +D V KP +E++AR+ + R+ ++ Sbjct: 77 LRTWSHVPVIVLSVRANEEEKVKLLDAGANDYVTKPFSVQELMARIRVLLRQ-----HQH 131 Query: 127 ETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 T +F DG R + ++ L R+E ++L L N+G+ + + QI ++ Sbjct: 132 STVDTAIFDDGVLKIDFSKRQVFLNQQLLSLTRKEYQLLNLLAKNKGQLITQPQILKELW 191 Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203 G + + + + ++KLR KL + Sbjct: 192 GPTHQE-DTHYLRILVAKLRVKLND 215 >gi|238020531|ref|ZP_04600957.1| hypothetical protein GCWU000324_00417 [Kingella oralis ATCC 51147] gi|237867511|gb|EEP68517.1| hypothetical protein GCWU000324_00417 [Kingella oralis ATCC 51147] Length = 227 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 24/171 (14%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + +RA S++P+I ++ + + G DD V KP RE+LAR+ AI RR + Sbjct: 63 LDVLKTVRAQSKIPVIMLTAKGDDIDRIIGLEMGADDYVPKPCQPRELLARINAILRRSQ 122 Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 VS + +G + +F R V + L E +LE LM + G+ V+K Sbjct: 123 QNPDANAVSASIVASG-VTLFPSKRQAMVGDSMLELTSTEFNLLEVLMRHAGQVVSKEN- 180 Query: 174 FSAIYGLFDEAVEENV------VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L EA++ + ++ HIS +R KL + + + R LGY Sbjct: 181 ------LSQEALDRKLAKFDRSIDVHISSIRHKLGDA---SLIQTVRGLGY 222 >gi|229506825|ref|ZP_04396334.1| DNA-binding response regulator [Vibrio cholerae BX 330286] gi|229510381|ref|ZP_04399861.1| DNA-binding response regulator [Vibrio cholerae B33] gi|229517488|ref|ZP_04406933.1| DNA-binding response regulator [Vibrio cholerae RC9] gi|229605298|ref|YP_002876002.1| DNA-binding response regulator [Vibrio cholerae MJ-1236] gi|229345524|gb|EEO10497.1| DNA-binding response regulator [Vibrio cholerae RC9] gi|229352826|gb|EEO17766.1| DNA-binding response regulator [Vibrio cholerae B33] gi|229357176|gb|EEO22094.1| DNA-binding response regulator [Vibrio cholerae BX 330286] gi|229371784|gb|ACQ62206.1| DNA-binding response regulator [Vibrio cholerae MJ-1236] Length = 247 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I RA +P++ ++ + + D G D+ + KP E+LAR+ I RR S Sbjct: 92 LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 148 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE G + + ++ + L R E +IL LM G+ ++K + A++ Sbjct: 149 SGSAEELISVGELDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 208 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +DE +N +E HI LRKKL + L V + R +GY I+ Sbjct: 209 G-WDEGSSDNAIEVHIHNLRKKLPDNL----VKNVRGVGYMIE 246 >gi|255655908|ref|ZP_05401317.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296450670|ref|ZP_06892423.1| response regulator [Clostridium difficile NAP08] gi|296879213|ref|ZP_06903208.1| response regulator [Clostridium difficile NAP07] gi|296260514|gb|EFH07356.1| response regulator [Clostridium difficile NAP08] gi|296429756|gb|EFH15608.1| response regulator [Clostridium difficile NAP07] Length = 223 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 34/237 (14%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ--SSAREDVSAIEAFLI-GKGE 58 ++I+D + +G F +DG ++ F + +E L +S D ++ L G G Sbjct: 3 LLIIEDDINLNEGLFYAFENDGFNV--FKAYTKQEGLNIFNSKNIDFIILDCNLPDGDGF 60 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 V +L IR S +P+I ++ S + + G+DD + KP + ARV R Sbjct: 61 DVCQL---IREKSDIPIIMLTARDSEIDEVKGLEIGLDDYITKPFSLSVLKARVKVAIR- 116 Query: 119 LKVSNNRAETGPIRVFSDG--RDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKT 171 K SNN+ ++S+G D ++ L E ++L YL+ N+G+ + K Sbjct: 117 -KKSNNKV------IYSNGIKLDQKLLKVYKNKVCLELSSVEYKLLSYLIENKGQILLKE 169 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSIDWN 223 QI I+ + V+EN+V +I +LR K+ + DP + K +GY WN Sbjct: 170 QILHHIWDSEENYVDENIVSVNIRRLRVKVED----DPSNPKYIKTAYGMGYL--WN 220 >gi|197303231|ref|ZP_03168272.1| hypothetical protein RUMLAC_01954 [Ruminococcus lactaris ATCC 29176] gi|197297657|gb|EDY32216.1| hypothetical protein RUMLAC_01954 [Ruminococcus lactaris ATCC 29176] Length = 241 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/240 (24%), Positives = 112/240 (46%), Gaps = 28/240 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 V+I+D ++++ L D G E + R D+ ++ L G G+ + Sbjct: 4 IVIIEDDKILREELEILLNDSGYQAEILSDFTDAAAQVRQIRPDLVLLDIILPGANGQYI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R IR S VP+I ++ + SG DD V KP + +L R+ I RR + Sbjct: 64 L---RQIREKSDVPVIMLTSKDGEVEEIMSRSSGADDYVTKPYNPTILLLRIETILRRTE 120 Query: 121 VSNNRAE--TGPIR--------VFSDGRDPEVQ-----------GEVFPLPRRERRILEY 159 + ++E +R V + +D E++ G+ L + E IL Sbjct: 121 QTGRQSEQRASSVRGEKAEGEAVQEELQDEELRLNLLKSTVSYHGDEVVLSKNELAILHC 180 Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 LM+ +G+ V++ ++ ++ + E V++N + +I++LRK+L ++G + ++++R GY Sbjct: 181 LMSRKGQIVSRDELMDHLWDM-SEFVDDNTLTVNINRLRKRL-AQIGLENKIETRRGQGY 238 >gi|170738271|ref|YP_001779531.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169820459|gb|ACA95041.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 249 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/207 (23%), Positives = 100/207 (48%), Gaps = 8/207 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 +L++D + + ++ +G +E F N +E L S D+ ++ + G G+K Sbjct: 7 IMLLEDDRIQQTMLVSWLKAEGYQVEAFDNGIEARNHL-SDHWADLMILDWDVPGLSGDK 65 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L R R+ S VP+I + + + + D+G DD + KP+ LAR+ A+ RR Sbjct: 66 LLSWVRG-RSRSTVPVIFQTVHSDEEEIVRILDTGADDFLIKPVDRIVFLARIRALLRRF 124 Query: 120 KVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + R G + + + +E +L +L ++RG V + ++S Sbjct: 125 QTAGSERRRMNVGDYILDRANLNISRGATSHSIGAKEFDLLWHLASHRGIVVQRQDLYSV 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203 ++G +D + V+ ++S+LR +L+N Sbjct: 185 VWG-WDGGSQSRSVDMYVSRLRTRLKN 210 >gi|170756077|ref|YP_001782072.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169121289|gb|ACA45125.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 4/113 (3%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150 G DD + KP RE++ARV A+ RR N +++ G I V + GE L Sbjct: 99 GADDYITKPFSVREMIARVKAVLRRRTTINIESKSYILGNIVVDFEKHSLTKAGEKIELT 158 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 +E +LE L+ N+GK + + + I+G ++ E V+ HI LRKK+ + Sbjct: 159 LKEFELLEVLIKNKGKVMTRDFLLDRIWG-YEYIGETRTVDVHIRHLRKKIED 210 >gi|138897044|ref|YP_001127497.1| two-component response regulater [Geobacillus thermodenitrificans NG80-2] gi|196249865|ref|ZP_03148561.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134268557|gb|ABO68752.1| Two-component response regulater [Geobacillus thermodenitrificans NG80-2] gi|196210741|gb|EDY05504.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 237 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 80/170 (47%), Gaps = 11/170 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R +P+I ++ S + + G DD V KP RE+LARV A RR Sbjct: 62 MEVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHA 121 Query: 121 VSNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + E GP+ + D + +GE L RE +L YL + G+ + + Sbjct: 122 QTATQEEEESETNEIVVGPLVIRPDAYVVQKRGETIELTHREFELLHYLAKHIGQVMTRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 182 HLLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 230 >gi|15674628|ref|NP_268802.1| two-component response regulator [Streptococcus pyogenes M1 GAS] gi|19745650|ref|NP_606786.1| two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21909908|ref|NP_664176.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|28896393|ref|NP_802743.1| two-component response regulator [Streptococcus pyogenes SSI-1] gi|50913815|ref|YP_059787.1| VicR [Streptococcus pyogenes MGAS10394] gi|56808928|ref|ZP_00366636.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pyogenes M49 591] gi|71903089|ref|YP_279892.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|71910248|ref|YP_281798.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|94988065|ref|YP_596166.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94989945|ref|YP_598045.1| two-component response regulator VicR [Streptococcus pyogenes MGAS10270] gi|94991951|ref|YP_600050.1| two-component response regulator VicR [Streptococcus pyogenes MGAS2096] gi|94993851|ref|YP_601949.1| two-component response regulator VicR [Streptococcus pyogenes MGAS10750] gi|139474240|ref|YP_001128956.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|209558999|ref|YP_002285471.1| Two-component response regulator [Streptococcus pyogenes NZ131] gi|306827822|ref|ZP_07461092.1| response regulator [Streptococcus pyogenes ATCC 10782] gi|13621741|gb|AAK33523.1| two-component response regulator [Streptococcus pyogenes M1 GAS] gi|19747781|gb|AAL97285.1| two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21904096|gb|AAM78979.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|28811644|dbj|BAC64576.1| putative two-component response regulator [Streptococcus pyogenes SSI-1] gi|50902889|gb|AAT86604.1| VicR [Streptococcus pyogenes MGAS10394] gi|71802184|gb|AAX71537.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|71853030|gb|AAZ51053.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|94541573|gb|ABF31622.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94543453|gb|ABF33501.1| Two-component response regulator VicR [Streptococcus pyogenes MGAS10270] gi|94545459|gb|ABF35506.1| Two-component response regulator VicR [Streptococcus pyogenes MGAS2096] gi|94547359|gb|ABF37405.1| Two-component response regulator VicR [Streptococcus pyogenes MGAS10750] gi|134272487|emb|CAM30750.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|209540200|gb|ACI60776.1| Two-component response regulator [Streptococcus pyogenes NZ131] gi|304429992|gb|EFM33031.1| response regulator [Streptococcus pyogenes ATCC 10782] Length = 236 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 13/155 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S VP+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 61 LEVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120 Query: 121 -----VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 V+ A +G +++ D + G+ L RE +L +L + G+ + Sbjct: 121 TIETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVM 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ + +LR+K+ + Sbjct: 181 TREHLLEIVWG-YDYFGDVRTVDVTVRRLREKIED 214 >gi|325267975|ref|ZP_08134623.1| two component response regulator [Kingella denitrificans ATCC 33394] gi|324980578|gb|EGC16242.1| two component response regulator [Kingella denitrificans ATCC 33394] Length = 237 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/171 (29%), Positives = 81/171 (47%), Gaps = 23/171 (13%) Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L + R IR + + P++ ++ L + L D G DD V KP E+LAR+ A+ RR Sbjct: 72 LSMLRHIRQNRNLTPVLIVTAQDDLDSRLSGLDGGADDYVVKPFDMAELLARIRAVLRR- 130 Query: 120 KVSNNRAETGPIRVFSDG---RDPEV-------QGEVFPLPRRERRILEYLMANRGKRVA 169 + + P+ S+G +P Q E L +E IL+ L++ G + Sbjct: 131 ----HHGQAAPL--ISNGVITLNPATYQVQLAGQEENISLSNKEFAILQALVSRAGTIHS 184 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + IYG DE VE N ++ I LRK K+G D + + R +G+ + Sbjct: 185 RADLEDKIYGWGDE-VESNAIDFLIHSLRK----KIGKDLIKNIRGVGWLV 230 >gi|315652558|ref|ZP_07905539.1| response regulator [Eubacterium saburreum DSM 3986] gi|315485187|gb|EFU75588.1| response regulator [Eubacterium saburreum DSM 3986] Length = 250 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 19/212 (8%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V DDR +V I L G+ E + + EE ++ A+ V + +I V Sbjct: 24 ILVCDDDREIVDAIKIYLSGE---GFEVIAAYDGEEAIKLMAKHKV---DLLIIDIMMPV 77 Query: 61 LELPRI---IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 L+ R IR +S +P+I +S + + G DD + KP + E++ARV + R Sbjct: 78 LDGIRATMQIRENSTIPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLR 137 Query: 118 RLKVSNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R K N + P RV + ++ V GE+ L E IL L N GK + Sbjct: 138 RYKKLGNMSMPEPQRVVVGDLEIDDETKEVVVAGELIKLTPIEYNILLLLAKNAGKVYSI 197 Query: 171 TQIFSAIYGLFDEAV-EENVVESHISKLRKKL 201 +I+ I+ +EA+ +N V HI +R+K+ Sbjct: 198 DEIYEQIWN--EEAIGADNTVAVHIRHIREKI 227 >gi|296271227|ref|YP_003653859.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296094014|gb|ADG89966.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 234 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 7/141 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120 R+ SQ P++ ++ + + + G DD V KP E++AR+ A+ RR Sbjct: 72 RLRGCGSQTPVVYLTARDATEDKVRGLTLGGDDYVTKPFSLDEVIARIRAVLRRTAGDPY 131 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V R I + + + GE L E ++L +LM N G+ ++K QI ++ Sbjct: 132 VPPPRLTFADIELDEESHEVWRGGEPIMLSPTEFKLLRFLMLNAGRVLSKGQILDHVW-- 189 Query: 181 FDEAVEENVVESHISKLRKKL 201 D E +VES++S LR+K+ Sbjct: 190 -DHVRGEGIVESYVSALRRKI 209 >gi|294624402|ref|ZP_06703094.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601300|gb|EFF45345.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 233 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 P++ ++ ++ + D G DD + KP RE AR + RR + ++ + G Sbjct: 73 TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNRGQASEVVQIGGF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + G LP RE R+ E L+ G+ V K +I + ++G FD+ N +E Sbjct: 133 VFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNGLFG-FDDDAGPNAIE 191 Query: 192 SHISKLRKKL 201 ++ +LR+KL Sbjct: 192 LYVGRLRRKL 201 >gi|229494339|ref|ZP_04388102.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121] gi|229318701|gb|EEN84559.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121] Length = 235 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 10/163 (6%) Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 L R +RA P++ ++ SL + G DD V KP E++ R+ I RR Sbjct: 69 LLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGR 128 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + R + I + D R+ +GE+ L E +L Y M N G ++K +I Sbjct: 129 GVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSKPRILDH 188 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 ++ +D E VVES++S LR+K+ G P + + R +GY Sbjct: 189 VWN-YDFGGEVGVVESYVSYLRRKVDT--GETPLIHTLRGVGY 228 >gi|256829868|ref|YP_003158596.1| winged helix family two component transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256579044|gb|ACU90180.1| two component transcriptional regulator, winged helix family [Desulfomicrobium baculatum DSM 4028] Length = 229 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 13/184 (7%) Query: 31 SLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIGIS 79 +LE + ++ SA + S + A + VL ++ + +R S+VP+I +S Sbjct: 22 NLELDGFMVLSATDGASGLAAVQANAPDLVLLDLGLPDIDGIKVCQTLRRDSEVPVIMLS 81 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRD 139 ++ L + G DD + KP + E+ AR+ + RR++ S + D R Sbjct: 82 ARDTVADKLLGLECGADDYLVKPFNALELSARIRTVLRRIRRSETATAQRNGNIILDYRS 141 Query: 140 PE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 E +QG L R E +LE +A+ G+ + + I S +G V+ H+ +L Sbjct: 142 HEATIQGRQVRLTRTEFSLLELFVAHPGETLTRDFIQSQNWGDSKLYSHSRAVDVHVQRL 201 Query: 198 RKKL 201 RKK+ Sbjct: 202 RKKI 205 >gi|217968684|ref|YP_002353918.1| two component transcriptional regulator PhoB, winged helix family [Thauera sp. MZ1T] gi|217506011|gb|ACK53022.1| two component transcriptional regulator PhoB, winged helix family [Thauera sp. MZ1T] Length = 236 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 12/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ A G + N E + + A D+ ++ L G + Sbjct: 5 ILLVEDEPAIQELIAANLARAGHHVVRANDAESAQRIVREALPDLVLLDWML--PGASGV 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E R +RA + +P+I ++ Q + + G DD V KP RE++AR+ A+ RR Sbjct: 63 EFARRLRADERTRDIPIIMLTARGEEQDKVTALEVGADDYVTKPFSPRELVARIKAVLRR 122 Query: 119 L--KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + E G +R+ L E R+L +LM + + ++ Q+ Sbjct: 123 RAPQTTEDVVELGGLRLDPATHRVSAGETALALGPTEFRLLHFLMTHPERVHSRAQLLDQ 182 Query: 177 IYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G +F VEE V+ HI +LR L + + R GY Sbjct: 183 VWGDHVF---VEERTVDVHIRRLRCALEPSAHDALIQTVRGSGY 223 >gi|223935938|ref|ZP_03627853.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223895539|gb|EEF61985.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 224 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 97/199 (48%), Gaps = 13/199 (6%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYP 82 VS +G +L L S+ D ++ L G+ G VL R + +Q P++ +S Sbjct: 29 VSHDGTEAL----LLASNTPFDAIVLDIMLPGRDGLSVLRQLR--QQKNQTPVLLLSARG 82 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPIRVFSDGRDPE 141 + ++ ++G DD + KP E++ARV +I RR + + + + + R + Sbjct: 83 EVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSNEPKSVLLQVADLTLDTITRQAQ 142 Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 G F L RE R+LE+LM G+ + I ++ +D N+V+ +I +LR+K+ Sbjct: 143 RGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVWD-YDFDPGTNLVDVYIKRLREKV 201 Query: 202 RNKLGFDP--VDSKRFLGY 218 GF+P + + R +GY Sbjct: 202 DE--GFEPKLLHTVRNVGY 218 >gi|167761180|ref|ZP_02433307.1| hypothetical protein CLOSCI_03585 [Clostridium scindens ATCC 35704] gi|167660846|gb|EDS04976.1| hypothetical protein CLOSCI_03585 [Clostridium scindens ATCC 35704] Length = 239 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 1/143 (0%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R ++ + P+I ++ + D G DD + KP H + +R+AA+ RRL Sbjct: 82 DFCRWVKEQADTPIIFLTVRDGVTDITRGLDMGADDYIIKPFHIAVLESRIAAVLRRLPE 141 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G I + D + GE L E R+L L+ N+G+ + + I ++ Sbjct: 142 DKQPVLVCGDISLNKDKMQGYLNGEPVTLTALEYRLLHILLENKGRTLPRNLILERLWDA 201 Query: 181 FDEAVEENVVESHISKLRKKLRN 203 V +N + + +LRKKL + Sbjct: 202 DGNFVNDNTLTVTMRRLRKKLND 224 >gi|220918235|ref|YP_002493539.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] gi|219956089|gb|ACL66473.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] Length = 238 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 19/158 (12%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +RA VP+I ++ + ++G DD + KP RE+LAR+ A+ RR Sbjct: 68 LEVCRELRARLPVPIIMLTALGEEADRVLGLETGADDYLAKPFSSRELLARLRALVRR-- 125 Query: 121 VSNNRAETGPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAKT 171 R GP R D E+ G L E +L L G+ + + Sbjct: 126 ---GRGSLGPPREVIRVGDLELSPRDWSASRAGRPLRLTTAEFVLLRVLAERAGRVLTRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 Q+ G DEA + + +++HIS +LR+KLG DP Sbjct: 183 QLLDLTKGSADEAFDRS-IDAHIS----RLRHKLGDDP 215 >gi|92118761|ref|YP_578490.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91801655|gb|ABE64030.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 224 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 16/154 (10%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNN 124 +P++ ++ ++ ++ SG DD + KP E++AR+ A+ RR L++SN Sbjct: 73 IPILVLTARGGVEDRVNGLRSGADDYLVKPFAFDELVARLEALLRRPGQLLGSSLRLSNV 132 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 +T +VF D + P+ L RE +LE LM +G V+K + I+GL + Sbjct: 133 TFDTEGRQVFVDMK-PQ------NLSAREIAVLELLMRRKGSVVSKKLLEDQIFGLTGD- 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V N VE ++ +LRK+L + + + R +GY Sbjct: 185 VASNAVEVYVHRLRKQLLDIGAKVRITTIRGVGY 218 >gi|325925213|ref|ZP_08186624.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325544380|gb|EGD15752.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] Length = 238 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 25/173 (14%) Query: 51 AFLIGKGEKVL------------ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98 A L G+G +++ E+ R IR S VP+I ++ + D+G +D Sbjct: 48 ALLAGQGAELVVLDIGLPDRDGHEVLREIRQWSNVPVIMLTVRAGETEKVAALDAGANDY 107 Query: 99 VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLP 150 V KP +E++AR+ ++ R+ + E+ VF DG R+ + GE PL Sbjct: 108 VTKPFGVQELMARIRSLLRQAGAGSTVEES----VFDDGRLHIHLGLREVTLHGEAVPLS 163 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 R+E +L L+ + G+ V + Q+ ++G E + + + + KLR+KL++ Sbjct: 164 RKEYALLALLLKHAGRVVTQPQLLREVWGPTHEE-DTHYLRILVGKLRQKLQD 215 >gi|312871584|ref|ZP_07731676.1| putative response regulator protein GraR [Lactobacillus iners LEAF 3008A-a] gi|311092809|gb|EFQ51161.1| putative response regulator protein GraR [Lactobacillus iners LEAF 3008A-a] Length = 222 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 6/156 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR SQVP+I I+ + + G D+ + KPI +A++ A+ RR KV + Sbjct: 66 IRQISQVPIIFITSHTESGDIVRAMQMGADEYITKPIDITVTIAKIQAVLRRTYDYKVGS 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + +++ E + V L R E ILE L + K + I + + D Sbjct: 126 DSIMYDDLKLNLSVAHLEGKNFVLELTRTELLILEILFNFKNKIAKREDIINYCWQ-GDA 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +++N + +I++LRKKL+ +G+D + +K+ +GY Sbjct: 185 FIDDNTLAVNIARLRKKLKT-VGYDELIQTKKGIGY 219 >gi|218232892|ref|YP_002368310.1| transcriptional activator protein CopR [Bacillus cereus B4264] gi|218160849|gb|ACK60841.1| transcriptional activator protein CopR [Bacillus cereus B4264] Length = 235 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 82/168 (48%), Gaps = 13/168 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R++ ++P + ++ + D G +D + KP +LAR+ + RR Sbjct: 70 LEVARLVNQKKKIPYLLLTSRSEPLDIMQGLDMGAEDYITKPYDLTVLLARIRTVLRR-S 128 Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 SN+ + G I + V+G+ L ++ +L Y + ++G+ ++K +++ Sbjct: 129 YSNDISNGGITRCGNIEINLLTHKVIVEGKHVHLTKQLFELLHYFIIHKGQIISKEELYK 188 Query: 176 AIYGLFD--EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G +D E E N +E +I ++LRN L D + + R GY ++ Sbjct: 189 NIWG-YDPSELQETNTLEVNI----RRLRNSLDIDIIKTVRGKGYVLE 231 >gi|21244208|ref|NP_643790.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21109847|gb|AAM38326.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 233 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 P++ ++ ++ + D G DD + KP RE AR + RR + ++ + G Sbjct: 73 TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNRGQASEVVQIGGF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + G LP RE R+ E L+ G+ V K +I + ++G FD+ N +E Sbjct: 133 VFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNGLFG-FDDDAGPNAIE 191 Query: 192 SHISKLRKKL 201 ++ +LR+KL Sbjct: 192 LYVGRLRRKL 201 >gi|257485787|ref|ZP_05639828.1| heavy metal response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|302130309|ref|ZP_07256299.1| heavy metal response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|6045171|dbj|BAA85309.1| ORFR [Pseudomonas syringae] gi|331012883|gb|EGH92939.1| heavy metal response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 228 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 6/161 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-- 122 R+ A VP++ ++ + + + G DD + KP E+LARV + RR S Sbjct: 65 RLRTAGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGSSSLP 124 Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 + G ++V R G+ L +E +LE LM +G+ ++K+ I S ++ + Sbjct: 125 VQTSLQIGDLQVDLLKRRATRGGKRIDLTAKEFALLELLMRRQGEVLSKSLIASQVWDMN 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + NV+E I +LR K+ + + + R +GY +D Sbjct: 185 FDS--DTNVIEVAIRRLRAKIDDDFEAKLLHTCRGMGYMLD 223 >gi|332828645|gb|EGK01341.1| hypothetical protein HMPREF9455_02369 [Dysgonomonas gadei ATCC BAA-286] Length = 226 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 80/163 (49%), Gaps = 6/163 (3%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L++ R +++ ++ +I IS SL L D G DD + KP H E+ AR+ +I RR Sbjct: 60 LDIIRKLKSKNKDAGVIIISAKNSLDDKLTGLDIGADDYLTKPFHLSELNARIKSIIRRR 119 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K SN + + + V D R V + L R+E +L Y + N K ++K I + Sbjct: 120 GFKGSNEK-KFNELTVQFDNRRLFVNEKEVVLTRKEYDLLLYFIMNEDKVLSKEDIAEHL 178 Query: 178 YG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +G + A + + +HI LRKKL + D + + +GY Sbjct: 179 WGDDMSLTADSFDFIYNHIKNLRKKLIDNGCKDYIKTVYGIGY 221 >gi|324326529|gb|ADY21789.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 231 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 95/207 (45%), Gaps = 13/207 (6%) Query: 27 EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+N + + +E LQ + +V + ++ LE+ + +R ++ VP++ +S Sbjct: 25 EGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135 + +G DD + KP + E++ARV A+ RR N ++ E G IR+ S Sbjct: 85 DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSSKNEDGIIRIRSAEIHK 144 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 +V GE L E IL L +N G+ + +IF ++ D V HIS Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203 Query: 196 KLRKKLRNKLGFDP-VDSKRFLGYSID 221 LR KL + + + + +GY I+ Sbjct: 204 NLRDKLETGMNEEKFIHTVWGVGYKIE 230 >gi|296112612|ref|YP_003626550.1| two-component system response regulator [Moraxella catarrhalis RH4] gi|295920306|gb|ADG60657.1| two-component system response regulator [Moraxella catarrhalis RH4] gi|326560872|gb|EGE11237.1| two-component system response regulator [Moraxella catarrhalis 7169] gi|326563890|gb|EGE14141.1| two-component system response regulator [Moraxella catarrhalis 46P47B1] gi|326566562|gb|EGE16708.1| two-component system response regulator [Moraxella catarrhalis 12P80B1] gi|326566899|gb|EGE17038.1| two-component system response regulator [Moraxella catarrhalis 103P14B1] gi|326569771|gb|EGE19821.1| two-component system response regulator [Moraxella catarrhalis BC8] gi|326570802|gb|EGE20827.1| two-component system response regulator [Moraxella catarrhalis BC1] gi|326575098|gb|EGE25026.1| two-component system response regulator [Moraxella catarrhalis CO72] gi|326576816|gb|EGE26723.1| two-component system response regulator [Moraxella catarrhalis 101P30B1] gi|326577731|gb|EGE27607.1| two-component system response regulator [Moraxella catarrhalis O35E] Length = 237 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 10/164 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G L + R +RAH Q P++ ++ + + G DD V KP+ R +LAR+ A+ Sbjct: 64 GSDGLAVCREVRAHYQQPILMLTARTDDMDQVLGLEMGADDYVAKPVQPRVLLARIRALL 123 Query: 117 RR-----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR S R E G + + + GR + E+ E +L L +N G+ +++ Sbjct: 124 RRSDTVPSDTSPQRLEFGDLVIDNGGRSVTLNDELVDFTSAEYDLLWLLASNAGRILSRE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 IF + G+ + ++ ++ IS++R K+G D + KR Sbjct: 184 DIFERLRGIEYDG-QDRSIDVRISRIRP----KIGDDSENPKRI 222 >gi|294085650|ref|YP_003552410.1| DNA-binding response regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292665225|gb|ADE40326.1| DNA-binding response regulator [Candidatus Puniceispirillum marinum IMCC1322] Length = 221 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 26/213 (12%) Query: 22 DGVSLEGFN-----SLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLELPRIIRAHS-QVP 74 D +L+G N +++ E L+S D+ ++ L G G L R +R+ +P Sbjct: 18 DHFTLQGHNADIAETVKLAEELRSLTHYDIMLLDIMLPDGDGRTFL---RSLRSQKISLP 74 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVF 134 +I ++ + +D D G DD + KP E+ AR A+ RR + T VF Sbjct: 75 IIVMTARSEVSDKVDLLDIGADDYIIKPFDFAELEARCRAVLRR-----HTGTTQTQLVF 129 Query: 135 SD-GRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 D +P P L RE R+LE M K Q+ I+ + E + EN Sbjct: 130 GDIALNPLTAELQTPETSHMLRNRELRLLEIFMNAPDILFTKEQLTDRIFNI-SETISEN 188 Query: 189 VVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +E +I+++RKKL +G + + + R +GY + Sbjct: 189 AIEVYIARVRKKL---VGCNVYIQTMRGIGYKL 218 >gi|255020668|ref|ZP_05292730.1| two component transcriptional regulator, winged helix family [Acidithiobacillus caldus ATCC 51756] gi|254969904|gb|EET27404.1| two component transcriptional regulator, winged helix family [Acidithiobacillus caldus ATCC 51756] Length = 223 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 18/170 (10%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+L R +R S +P+I +S +L+T ++ DSG DD + KP E+LAR+ + RR Sbjct: 60 LDLLRELRERGSSLPVIILSARDALETRIEGLDSGADDYLVKPFASSELLARLRVLQRRQ 119 Query: 120 K------VSNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +SN + P + +G++ + Q L +RE +L L++ G ++ Sbjct: 120 GGSGQAILSNGKIHMDPASFEAWREGQEEQRQ----RLGQREFALLSTLLSRPGVIFSRQ 175 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + +Y + E VE N ++ I LR+ KLG D + + R G+ ++ Sbjct: 176 ELETRLYP-WGEEVESNSIDFLIHSLRR----KLGSDAIQNIRGAGWLVE 220 >gi|229100005|ref|ZP_04230925.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229119605|ref|ZP_04248884.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228663848|gb|EEL19410.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228683433|gb|EEL37391.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 228 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 8/142 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123 IR +P+I +S + SG DD ++KP + E++ARV + RR K N Sbjct: 68 IREEQTIPIIMLSAKSEDMDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRHKKYNTDT 127 Query: 124 ----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N E + + SD R V+ + L +E ILE L N+G ++ +I+ A++ Sbjct: 128 NKNKNTIEMVGLTINSDTRQVWVKNQEVRLTPKEFDILELLARNKGMVLSVEKIYEAVWK 187 Query: 180 LFDEAVEENVVESHISKLRKKL 201 NV+ HI+K+R K+ Sbjct: 188 EQFYKSNNNVM-VHITKIRDKI 208 >gi|78049167|ref|YP_365342.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037597|emb|CAJ25342.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 233 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 P++ ++ ++ + D G DD + KP RE AR + RR + ++ + G Sbjct: 73 TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNRGQASEVVQIGGF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + G LP RE R+ E L+ G+ V K +I + ++G FD+ N +E Sbjct: 133 VFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNGLFG-FDDDAGPNAIE 191 Query: 192 SHISKLRKKL 201 ++ +LR+KL Sbjct: 192 LYVGRLRRKL 201 >gi|86147196|ref|ZP_01065512.1| transcriptional regulator [Vibrio sp. MED222] gi|218708119|ref|YP_002415740.1| DNA-binding response regulator PhoP [Vibrio splendidus LGP32] gi|85835080|gb|EAQ53222.1| transcriptional regulator [Vibrio sp. MED222] gi|218321138|emb|CAV17088.1| DNA-binding response regulator in two-component regulatory system with PhoQ, PhoP [Vibrio splendidus LGP32] Length = 226 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 2/157 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 + +I R VP++ ++ + Q ++ +SG DD + KP E+ AR+ A+ RR + Sbjct: 64 IKQIRRKEIAVPILILTARGNWQDKVEGLNSGADDYLTKPFQFEELHARLEALVRRNQGF 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S ++ + + + + + + L E +I EYL+ + + V+K QI ++Y Sbjct: 124 SASQIKAQSLTLDTQAKRISYDDALIELTALEFQIFEYLIRHCLQIVSKQQIADSLYAQ- 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E V+ N +E +S+LRKKL + + R GY Sbjct: 183 GENVQLNNIEVIVSRLRKKLTQYTQAKLISTIRGQGY 219 >gi|107023112|ref|YP_621439.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116686646|ref|YP_839893.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170735251|ref|YP_001774365.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105893301|gb|ABF76466.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116652361|gb|ABK13000.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|169821289|gb|ACA95870.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 239 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 22/198 (11%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQ 85 EG LE W A+ L+ G LE+ R RA ++ P+I S S Sbjct: 39 EGLRLLEQGNW---------DALILDLMLPGVDGLEICRRARAMTRYTPIIITSARSSEV 89 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDP--- 140 + + G DD + KP E++ARV A+ RR+ ++R + G + V DP Sbjct: 90 HRILGLELGADDYLAKPFSVLELVARVKALLRRVDALARDSRIDAGTLDVAGLAIDPIAR 149 Query: 141 --EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 V G L RE +L + + GK ++ + +A++G E E+ V +HI++LR Sbjct: 150 EASVDGARLDLTPREFDLLYFFARHPGKVFSRMDLLNAVWGYQHEGY-EHTVNTHINRLR 208 Query: 199 KKLRNKLGFDPVDSKRFL 216 K+ DP + R L Sbjct: 209 AKIEA----DPAEPVRIL 222 >gi|304397248|ref|ZP_07379127.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|308186446|ref|YP_003930577.1| Response regulator [Pantoea vagans C9-1] gi|304355397|gb|EFM19765.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|308056956|gb|ADO09128.1| Response regulator [Pantoea vagans C9-1] Length = 222 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 2/149 (1%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR-AETGPIR 132 P++ ++ Q ++ ++G DD V KP H E+ AR+ A+ RR ++ + P + Sbjct: 74 PILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVAARLQALMRRNSGHASQIIDMAPFQ 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 V R+ V E L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 134 VDLSRRELTVNEEPVKLTAFEYTIVETLIRNAGKVVSKDSLMLQLYP-DAELRESHTIDV 192 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +LRKK+ D + + R GY D Sbjct: 193 LMGRLRKKILALHPTDVIATVRGQGYRFD 221 >gi|269103945|ref|ZP_06156642.1| transcriptional regulatory protein CpxR [Photobacterium damselae subsp. damselae CIP 102761] gi|268163843|gb|EEZ42339.1| transcriptional regulatory protein CpxR [Photobacterium damselae subsp. damselae CIP 102761] Length = 229 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG------PIRVFSDGRDPEVQGEVF 147 G DD + KP RE+LAR+ AI RR + +NR G I ++ ++ Q Sbjct: 93 GADDYLPKPFSDRELLARMRAILRRTQALDNRVTHGDTIDYQDITIYPGRQEAFCQNRAL 152 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKLRN 203 + E +L Y + + GK ++K ++ + G FD A ++ H+S LRKKL Sbjct: 153 DVTGTELALLSYFIQHPGKIISKEELSLEVLGKRLAQFDRA-----IDMHVSNLRKKLPE 207 Query: 204 KLGFDP-VDSKRFLGY 218 +L P + + R GY Sbjct: 208 RLDDKPRIKTLRGKGY 223 >gi|262200820|ref|YP_003272028.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262084167|gb|ACY20135.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 241 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 7/145 (4%) Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +RA + P + +S S++ ++ G DD V KP E++AR+ + RR Sbjct: 75 LLRRLRADGIEAPALFLSARDSVEDKINGLTIGGDDYVTKPFSLEEVVARLQVLLRRSGF 134 Query: 122 SNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + I D E G + L E +L Y M N G ++K +I Sbjct: 135 DATEKQASRITFADIELDDETHEVFKAGNLVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 194 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++ +D E NVVES++S LR+KL Sbjct: 195 VWN-YDFGGEVNVVESYVSYLRRKL 218 >gi|253579017|ref|ZP_04856288.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849960|gb|EES77919.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 234 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 76/169 (44%), Gaps = 15/169 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR S +P+I IS ++ D+G DD + KP E+LAR+ RRL Sbjct: 63 VEVIKKIRTWSNMPIIVISARSEDTDKIEALDAGADDYITKPFSVEELLARIRVTQRRLA 122 Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 V + E G +++ ++GE L E ++L L N GK + T I Sbjct: 123 VMQSGEQLESSVFENGGLKIDYTAGCTYLKGEELHLTPIEYKLLCLLSRNVGKVLTHTYI 182 Query: 174 FSAIYGLFDEAVEENVVES---HISKLRKKLR-NKLGFDPVDSKRFLGY 218 I+G +N V S ++ LRKKL K G + + +GY Sbjct: 183 TQQIWG----RCSDNDVASLRVFMATLRKKLEPEKNGVQYIQTHIGIGY 227 >gi|268680710|ref|YP_003305141.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946] gi|268618741|gb|ACZ13106.1| response regulator receiver [Sulfurospirillum deleyianum DSM 6946] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 71/143 (49%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR+ S +P+I S L+ + + G DD + KP +E+ AR+ ++ RR K Sbjct: 62 LEICKEIRSKSDIPIIISSARSDLEDKIVGLELGADDYLPKPYEPKELYARIMSVLRRYK 121 Query: 121 VSNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 SNN E P +++ + QG L E +L +L+ V++ ++ + Sbjct: 122 KSNNPHEETPMALQLKEESHTIFFQGTPLTLTPAEFDVLAHLIKKNNCVVSRAELLGSAL 181 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 L +E E ++ IS++R KL Sbjct: 182 SL-NEENESRSLDVLISRIRTKL 203 >gi|239631692|ref|ZP_04674723.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066264|ref|YP_003788287.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|239526157|gb|EEQ65158.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438671|gb|ADK18437.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 12/159 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE VL IR S VP++ ++ Q T+ G +D + KP E+LARV Sbjct: 59 GESVLT---TIRKTSSVPVLVLTAIQDKQKTVALLQQGANDYLTKPFDIDELLARVQVQL 115 Query: 117 RR-LKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R+ L + +A + G I + V + LP++E +L +M + + K Sbjct: 116 RQTLPAPSAKAQDHLQVGEITLNLKRHAVTVNNQPLTLPKKEYAMLALMMRDPHQVFDKQ 175 Query: 172 QIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDP 209 Q++ ++G F A +N + HIS LR K+ N L DP Sbjct: 176 QLYEQVWGEPFMNA--DNTLNVHISNLRTKI-NDLAKDP 211 >gi|218528425|ref|YP_002419241.1| transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218520728|gb|ACK81313.1| two component transcriptional regulator, winged helix family [Methylobacterium chloromethanicum CM4] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 9/167 (5%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L R +R + P++ +S + + +G DD + KP E+LAR + RR Sbjct: 60 LSLVRSLREQAIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRR 119 Query: 120 KVSNNRAETGPIRVFS---DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++E RV D V G L RE R+LEYLM + G+ V +T + Sbjct: 120 TAATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLL 179 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ FD + NV++ H+S+LR K+ + + R GY I Sbjct: 180 EHVWDYHFDP--QTNVIDVHVSRLRAKIDRGFEHPMIHTVRGAGYVI 224 >gi|153954968|ref|YP_001395733.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855413|ref|YP_002472535.1| hypothetical protein CKR_2070 [Clostridium kluyveri NBRC 12016] gi|146347826|gb|EDK34362.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569137|dbj|BAH07121.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 227 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 76/145 (52%), Gaps = 9/145 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 + R +R S VP+I ++ + L F G D V KP+ + ++A++ A+ RR Sbjct: 64 VCRELRKISNVPIIMLTARGEDEDQLLGFQLGTDSYVTKPVSPKILVAKIKALLRRTYYD 123 Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +V +N + + + +G + ++ GE L +E L YL+ N+ +++ +I A Sbjct: 124 EINQVKDNTYD--GLFINEEGHEVKIDGENIYLSPKEFEFLCYLIKNKDIVLSREKILDA 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 I+G+ D + V++H+ +LR+KL Sbjct: 182 IWGI-DYYGDLRTVDTHVKRLREKL 205 >gi|322383169|ref|ZP_08056991.1| two-component response regulator YclK-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152712|gb|EFX45343.1| two-component response regulator YclK-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 19/196 (9%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 DG+ DG+ EG N S+ + D+ ++ L G E+ R IR ++ Sbjct: 20 DGFETTIATDGI--EGLNQ-------ASTEKFDLILLDLML--PGIDGYEICRKIRGKTE 68 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRLK----VSNNR 125 VP++ ++ + G DD ++KP E++ARV A Y RL V + Sbjct: 69 VPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANLAQYERLTTGSVVRSEE 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + GP+R+ + +E +L +L++N +K Q++ I+G+ D Sbjct: 129 VQVGPVRINRLTHRVYINNHELEFKNKEYELLLFLISNPDIVFSKEQLYERIWGM-DAIG 187 Query: 186 EENVVESHISKLRKKL 201 + V HI++LR+K+ Sbjct: 188 DLKTVAVHINRLREKI 203 >gi|315657068|ref|ZP_07909953.1| phosphate regulon response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492460|gb|EFU82066.1| phosphate regulon response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 227 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 108/230 (46%), Gaps = 15/230 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D ++D + G G + GF +++E+ ++ I ++ G Sbjct: 1 MIYFVEDDLNIRDLVVYTLGSTGFTARGFA--DYQEFREAMMELLPEMILLDIMLPGVDG 58 Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +++ R IRA+ + +P+I ++ + + D G DD + KP E+++R+ A+ R Sbjct: 59 IQILRRIRANPETKAIPVIMVTAKGAEFDKVKSLDLGADDYITKPFGMMELVSRIRAVLR 118 Query: 118 RL-KVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R+ ++++ AE G I + V+G L +E ++LE LM+ G ++ Sbjct: 119 RVPRLTDPTAEDEEILTIGTIDLNLPRHTVAVEGREVKLTLKEYQLLEELMSQPGILFSR 178 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +I+G + V+ HI LRKKL +++ R +GY I Sbjct: 179 DKLLDSIWG-YSFHGGTRTVDVHIRTLRKKLGP--AAKHIETVRGVGYKI 225 >gi|257062967|ref|YP_003142639.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256790620|gb|ACV21290.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 231 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 9/164 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 EL R +R + P++ +S S + + G DD + KP RE++ARV A+ RR + Sbjct: 66 ELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQM 125 Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ G I + E L RE +L LM GK ++ + Sbjct: 126 DAEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLLRE 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218 +G ++ E V++HI +LR KL GFDP +++ R GY Sbjct: 186 AWG-WEYITETKTVDTHIKRLRDKL-AAAGFDPGIIETVRGYGY 227 >gi|229158143|ref|ZP_04286211.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus ATCC 4342] gi|228625305|gb|EEK82064.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus ATCC 4342] Length = 230 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 7/149 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ RIIR S VP++ +S + G DD + KP E+ ARV A RR Sbjct: 62 LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121 Query: 121 VSNNRAETGPIRVFSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E G + D DP E G+ L +E IL+ + N+ + K QI+ Sbjct: 122 KYSATEEIGKVIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 + I+ + ++NV+ H+ +LR+K+ + Sbjct: 182 TLIWN-EEYYGDDNVINVHMRRLREKIES 209 >gi|227535312|ref|ZP_03965361.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187046|gb|EEI67113.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 12/159 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE VL IR S VP++ ++ Q T+ G +D + KP E+LARV Sbjct: 59 GESVLT---TIRKTSSVPVLVLTAIQDKQKTVALLQQGANDYLTKPFDIDELLARVQVQL 115 Query: 117 RRL-----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R+ + + + G I + V + LP++E +L +M + + K Sbjct: 116 RQTLPAPSAKTQDHLQVGEITLNLKRHAVTVNNQPLTLPKKEYAMLALMMRDPHQVFDKQ 175 Query: 172 QIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDP 209 Q++ ++G F A +N + HIS LR K+ N L DP Sbjct: 176 QLYEQVWGEPFMNA--DNTLNVHISNLRTKI-NDLAKDP 211 >gi|225575180|ref|ZP_03783790.1| hypothetical protein RUMHYD_03269 [Blautia hydrogenotrophica DSM 10507] gi|225037588|gb|EEG47834.1| hypothetical protein RUMHYD_03269 [Blautia hydrogenotrophica DSM 10507] Length = 238 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 81/178 (45%), Gaps = 7/178 (3%) Query: 25 SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84 +++ F S E EW Q A D+ ++ L L LP ++ QVP+I ++ SL Sbjct: 47 AIQAFTSKEALEWNQR-AELDLVLLDIMLPELDGYEL-LPYFMK--KQVPVIYLTAKDSL 102 Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV-FSDGRDPEVQ 143 + G DD V KP E+LARV + RR G + V F+ + Q Sbjct: 103 MDKVKGLKLGADDYVTKPFESIELLARVETVLRRCGRQEKEFCLGEVTVNFAQRKVFRGQ 162 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 V L +E +LE L+ N +++ Q+ +G E E V+ HI +LRKKL Sbjct: 163 NPV-ELTAQEFALLEVLIRNCNLALSREQLLEQAWGYVYEG-ETRTVDIHIQRLRKKL 218 >gi|188994617|ref|YP_001928869.1| probable two component system response regulator [Porphyromonas gingivalis ATCC 33277] gi|188594297|dbj|BAG33272.1| probable two component system response regulator [Porphyromonas gingivalis ATCC 33277] Length = 245 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 4/149 (2%) Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIR 132 LI IS +++ + + G DD + KP H E+ AR+ + RR K ++ E G + Sbjct: 75 LIIISAKDAIEDKVQGIELGADDYLTKPFHLLELNARIKGLIRR-KTAHGAMEIKLGNVS 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF-DEAVEENVVE 191 + D + V+G L R+E IL +LM + V K + A++G + D+A + V Sbjct: 134 LVPDRFEVAVKGHPLELKRKEYDILYHLMTRPNRLVDKAALAEAVWGDYIDQADNYDFVY 193 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + I LRK++ + + S GY + Sbjct: 194 AQIKNLRKQMNDAGATIEIKSVYGFGYKL 222 >gi|160945120|ref|ZP_02092346.1| hypothetical protein FAEPRAM212_02639 [Faecalibacterium prausnitzii M21/2] gi|158442851|gb|EDP19856.1| hypothetical protein FAEPRAM212_02639 [Faecalibacterium prausnitzii M21/2] Length = 228 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 6/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59 M +++D A +++ +G ++GF S E +A ++ ++ L G+ G Sbjct: 1 MIYIVEDDASIRELEQYALQSNGYEVQGFESAEPFWQAMRTAEPELVILDVMLPGEDGFS 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L+ R + ++P+I ++ S T+ D G DD + KP E L+RV RR Sbjct: 61 ILKKLRNTPSLRRLPIIMVTAKSSELDTVRGLDCGADDYIAKPFGIMEFLSRVRVALRRS 120 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V + I++ + V L +E +L L+ N V + I + Sbjct: 121 APEVRPDVLAFHEIQLDNARHSVTVNSTPVELTYKEYCLLRLLLENTSLVVTRETILQVV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D +VE V+ HI LRKKL + + + + R +GY + Sbjct: 181 WGT-DISVESRTVDMHIRTLRKKLGDAGRY--ICTVRKVGYKL 220 >gi|150007699|ref|YP_001302442.1| two-component system response regulator [Parabacteroides distasonis ATCC 8503] gi|256839960|ref|ZP_05545469.1| phosphate regulon transcriptional regulatory protein PhoB [Parabacteroides sp. D13] gi|149936123|gb|ABR42820.1| two-component system response regulator [Parabacteroides distasonis ATCC 8503] gi|256738890|gb|EEU52215.1| phosphate regulon transcriptional regulatory protein PhoB [Parabacteroides sp. D13] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 9/135 (6%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 P+I ++ + + + D+G DD + KP +E+ AR+ A+ RR S N + + Sbjct: 74 HAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRR---SGNESVHMAL 130 Query: 132 RVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 R DP G+V L +E R+LEY + N+G +++ + ++ D Sbjct: 131 RCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNVWDK-DFDTN 189 Query: 187 ENVVESHISKLRKKL 201 NVV+ +++ LR K+ Sbjct: 190 TNVVDVYVNYLRTKI 204 >gi|149371968|ref|ZP_01891287.1| two-component response regulator [unidentified eubacterium SCB49] gi|149355108|gb|EDM43669.1| two-component response regulator [unidentified eubacterium SCB49] Length = 239 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 10/134 (7%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146 FD+G DD + KPI + +L++V A+ RR K S ++ +T G I + + V Sbjct: 110 FDAGADDYITKPIKPKILLSKVKALLRRFK-SPSKVDTVVKIGNIIINREEYQVTVGKTE 168 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 LPR+E +L L + GK + +I ++G + V ++ HI +KLR K+G Sbjct: 169 LVLPRKEFELLSLLASKPGKVFKREEILDTVWG-NEVVVGGRTIDVHI----RKLREKIG 223 Query: 207 FDPVDSKRFLGYSI 220 D + + +GY I Sbjct: 224 DDRFKTVKGVGYKI 237 >gi|145294404|ref|YP_001137225.1| hypothetical protein cgR_0359 [Corynebacterium glutamicum R] gi|140844324|dbj|BAF53323.1| hypothetical protein [Corynebacterium glutamicum R] Length = 222 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 30/225 (13%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------KGEKVLELPRI 66 D IA F G+ EGF E ++ AR + ++ G +LE R Sbjct: 10 DAGIADFIVRGLIREGFECEITESGAEAFARAHSGDFDLMVLDLGLPHMDGTDILEQLRN 69 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 ++ +P+I ++ +++ L + G DD + KP E+LAR+ +L+++ + A Sbjct: 70 LQV--TLPIIVLTARTNIEDRLRTLEGGADDYMPKPFQFAELLARI-----KLRLAKHTA 122 Query: 127 ETGPI--RVFSDGRDPE---------VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + P RV +G D E + G L RRE +LE LM + G+ +++ Q+ Sbjct: 123 QESPTDARVLRNG-DVELDLRTQRVLIDGSWHDLSRREVDLLETLMRHPGQILSRAQLLR 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + D NVV+ ++ LRK K+G +++ R GY + Sbjct: 182 LVWDM-DWDPGSNVVDVYVRALRK----KIGAHRIETVRGSGYRL 221 >gi|285017456|ref|YP_003375167.1| two-component system regulatory protein [Xanthomonas albilineans GPE PC73] gi|283472674|emb|CBA15179.1| probable two-component system regulatory protein [Xanthomonas albilineans] Length = 227 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 16/210 (7%) Query: 14 GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR--AHS 71 G+ F DGV+ L + + AI L G +E+ R +R A Sbjct: 26 GHTVDFAADGVT-----------GLHLAVVHEFDAIVLDLNLPGMDGIEVCRKLRNEARK 74 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130 Q P++ ++ SL L FDSG DD + KP +E+ R+ A+ RR K + R TG Sbjct: 75 QTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQEVEVRLNALSRRGKGVHTRVLVTGD 134 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + D + Q ++ L +IL+ LM V + ++ + ++G +E + + + Sbjct: 135 LEYNLDTLEVRRQSKLLQLNPTALKILQALMEASPAVVTRQELETRVWG--EELPDSDSL 192 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 HI LR + G + ++ +GY I Sbjct: 193 RVHIHGLRAVVDKPFGVPMIQTRHGIGYRI 222 >gi|283787078|ref|YP_003366943.1| two-component response regulator [Citrobacter rodentium ICC168] gi|282950532|emb|CBG90197.1| two-component response regulator [Citrobacter rodentium ICC168] Length = 224 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 13/223 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G ++ E S + ++ L + + + Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEQCLESGHYSLVVLDLGLPDE-DGLH 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L RI + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 62 FLARIRQKKYTLPVLILTARDTLTDKISGLDVGADDYLVKPFALEELHARIRALLRR--- 118 Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +N+ E+ G + + R GE L +E +L LM G V + +++ I Sbjct: 119 HHNQGESELTVGDLTLNMGRRQVWKAGEELVLTPKEYALLSRLMLKAGSPVHREILYNDI 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Y +D N +E HI LR+K+G + + R GY + Sbjct: 179 YN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216 >gi|253687608|ref|YP_003016798.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754186|gb|ACT12262.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 226 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 74/159 (46%), Gaps = 16/159 (10%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R S +P+I +S Q +D D+G DD + KP E+LAR+ RR S+ Sbjct: 66 RDLRQWSSLPVIVLSARTDEQDKIDALDAGADDYLTKPFGIGELLARLRVALRR--HSHT 123 Query: 125 RAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ET G I V R G+ L E R+L L+A+ GK + + Q+ + ++G Sbjct: 124 QQETPLVSFGTITVDLLNRQVNRDGQELHLTPIEFRLLATLLASPGKVLTQRQLLTQVWG 183 Query: 180 LFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216 N VE SH ++ LR KL DP + L Sbjct: 184 -------PNAVEHSHYLRIYMGHLRQKLESDPARPRHLL 215 >gi|196041892|ref|ZP_03109180.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027264|gb|EDX65883.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/156 (21%), Positives = 80/156 (51%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + ++P++ ++ + F G DD + KP E++ RV A+ +R +++ +++ Sbjct: 68 LRKYYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 127 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + + + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 128 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + + + + R LGY ++ Sbjct: 187 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 222 >gi|184201479|ref|YP_001855686.1| OmpR family two-component response regulator [Kocuria rhizophila DC2201] gi|183581709|dbj|BAG30180.1| OmpR family two-component response regulator [Kocuria rhizophila DC2201] Length = 237 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 13/133 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 G DD V KP E++AR+ A+ RR L+ ++R + + + D + G L Sbjct: 101 GGDDYVTKPFSLDEVVARIRAVLRRTQPLEEEDSRLKVDGLVLDDDAHEVFRGGREIDLS 160 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP- 209 E ++L YLM N + ++K QI ++ +D + ++VES+IS LR+K+ N DP Sbjct: 161 PTEFKLLRYLMLNPNRVLSKAQILDHVWE-YDFNGDASIVESYISYLRRKIDN----DPE 215 Query: 210 ----VDSKRFLGY 218 + +KR +GY Sbjct: 216 QPSLIHTKRGVGY 228 >gi|167463992|ref|ZP_02329081.1| two component transcriptional regulator, winged helix family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 230 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 19/196 (9%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 DG+ DG+ EG N S+ + D+ ++ L G E+ R IR ++ Sbjct: 25 DGFETTIATDGI--EGLNQ-------ASTEKFDLILLDLML--PGIDGYEICRKIRGKTE 73 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRLK----VSNNR 125 VP++ ++ + G DD ++KP E++ARV A Y RL V + Sbjct: 74 VPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANLAQYERLTTGSVVRSEE 133 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + GP+R+ + +E +L +L++N +K Q++ I+G+ D Sbjct: 134 VQVGPVRINRLTHRVYINNHELEFKNKEYELLLFLISNPDIVFSKEQLYERIWGM-DAIG 192 Query: 186 EENVVESHISKLRKKL 201 + V HI++LR+K+ Sbjct: 193 DLKTVAVHINRLREKI 208 >gi|110833486|ref|YP_692345.1| two-component response regulatory protein [Alcanivorax borkumensis SK2] gi|110646597|emb|CAL16073.1| Probable two-component response regulatory protein [Alcanivorax borkumensis SK2] Length = 227 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 18/172 (10%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR HS VP+I ++ L + G DD + KP RE++ARV A+ RR Sbjct: 61 MEVCKTIRQHSNVPIIMVTARVDEVDRLLGLELGADDYICKPFSPRELVARVKAVLRRAN 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI---------LEYLMANRGKRVAKT 171 + P + S D E + P+ ++RI L L G+ ++ Sbjct: 121 PES------PEQEHSLQLDEERYEAILKQPQGQQRIGLTAIEFALLSTLSRQPGRIWSRD 174 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221 Q+ IY V + ++SHI KLR+KL ++ D + S +GY ++ Sbjct: 175 QLMDEIYNDH-RVVSDRTIDSHIRKLRRKLSDGDEQSHDWIGSVYGVGYRLE 225 >gi|2961074|gb|AAC05918.1| TctD [Salmonella enterica subsp. enterica serovar Typhi] Length = 223 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 5/132 (3%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 + G DD + KP E+ AR+ A+ RR + + +F D +QG+ L Sbjct: 90 LNVGADDYLPKPFELEELDARLRALLRRSAGLVHEVQQLGELIFHDEGYFLLQGQPLALT 149 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP- 209 RE+ +L LM R + V++ Q+F ++ L DE E+ +E +I +LRKKL+ G D Sbjct: 150 PREQALLTVLMYRRTRPVSRQQLFEQVFSLNDEVSPES-IELYIHRLRKKLQ---GSDVR 205 Query: 210 VDSKRFLGYSID 221 + R LGY ++ Sbjct: 206 ITVLRGLGYVLE 217 >gi|30262552|ref|NP_844929.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527850|ref|YP_019199.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49185393|ref|YP_028645.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49479219|ref|YP_036667.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165869212|ref|ZP_02213872.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167632497|ref|ZP_02390824.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167637603|ref|ZP_02395882.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685561|ref|ZP_02876785.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170704849|ref|ZP_02895315.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177649426|ref|ZP_02932428.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|196036697|ref|ZP_03104089.1| DNA-binding response regulator [Bacillus cereus W] gi|196040320|ref|ZP_03107621.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196043173|ref|ZP_03110411.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218903690|ref|YP_002451524.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225864541|ref|YP_002749919.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227814629|ref|YP_002814638.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228915145|ref|ZP_04078742.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228933850|ref|ZP_04096695.1| Sensor histidine kinase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228946198|ref|ZP_04108531.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229091551|ref|ZP_04222759.1| Sensor histidine kinase [Bacillus cereus Rock3-42] gi|229122099|ref|ZP_04251315.1| Sensor histidine kinase [Bacillus cereus 95/8201] gi|229184788|ref|ZP_04311981.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1] gi|229602327|ref|YP_002866875.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254685128|ref|ZP_05148988.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722537|ref|ZP_05184325.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254737579|ref|ZP_05195282.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743238|ref|ZP_05200923.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254751894|ref|ZP_05203931.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760414|ref|ZP_05212438.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30257184|gb|AAP26415.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502998|gb|AAT31674.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49179320|gb|AAT54696.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49330775|gb|AAT61421.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164715938|gb|EDR21455.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167514152|gb|EDR89519.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167532795|gb|EDR95431.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170130650|gb|EDS99511.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670921|gb|EDT21660.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172084500|gb|EDT69558.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|195990661|gb|EDX54637.1| DNA-binding response regulator [Bacillus cereus W] gi|196025482|gb|EDX64151.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028805|gb|EDX67411.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218535416|gb|ACK87814.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225786925|gb|ACO27142.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227007355|gb|ACP17098.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228598692|gb|EEK56319.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1] gi|228661442|gb|EEL17066.1| Sensor histidine kinase [Bacillus cereus 95/8201] gi|228691775|gb|EEL45524.1| Sensor histidine kinase [Bacillus cereus Rock3-42] gi|228813489|gb|EEM59777.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825806|gb|EEM71594.1| Sensor histidine kinase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228844574|gb|EEM89628.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266735|gb|ACQ48372.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 231 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 13/207 (6%) Query: 27 EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+N + + +E LQ + +V + ++ LE+ + +R ++ VP++ +S Sbjct: 25 EGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAETGPIRVFS----- 135 + +G DD + KP + E++ARV A+ RR N + E G IR+ S Sbjct: 85 DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNASSPKNEDGMIRIRSAEIHK 144 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 +V GE L E IL L +N G+ + +IF ++ D V HIS Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203 Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221 LR KL + G + + +GY I+ Sbjct: 204 NLRDKLETGMNGEKFIHTVWGVGYKIE 230 >gi|16126998|ref|NP_421562.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|221235790|ref|YP_002518227.1| two-component response regulator [Caulobacter crescentus NA1000] gi|13424362|gb|AAK24730.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|220964963|gb|ACL96319.1| two-component response regulator [Caulobacter crescentus NA1000] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VLE R R + P++ ++ + + FD+G DD + KP H E+LAR+ A+ Sbjct: 59 GVSVLE--RWRRGNVTTPVLILTARGAWSDKVAGFDAGADDYLAKPFHTEELLARLRAL- 115 Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 L+ S A G +R+ V GE L E R+L Y++ ++G+ + +T+ Sbjct: 116 --LRRSAGHAAPSLSCGALRLDPRAARASVNGEPLRLTSLEYRLLHYMIMHQGRVIGRTE 173 Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +Y FD + N +E I +LRK KLG D +++ R LGY + Sbjct: 174 LVEHLYDQDFDR--DSNTIEVFIGRLRK----KLGADRIETVRGLGYRL 216 >gi|304321183|ref|YP_003854826.1| two component response regulatorT [Parvularcula bermudensis HTCC2503] gi|303300085|gb|ADM09684.1| two component response regulatorT [Parvularcula bermudensis HTCC2503] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 8/187 (4%) Query: 38 LQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 + S D I+ L G G +LE+ R A Q P + +S + + +G D Sbjct: 39 MAESGGYDAYVIDRMLPGIDGLTMLEMRR--SAGDQTPALFLSALGEVDDRVAGLKAGGD 96 Query: 97 DVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRER 154 D + KP E++ARV A+ RR +N + G + + R G+ L RE Sbjct: 97 DYLVKPYAFSELIARVEALGRRRGPTNIQTTFTVGDLEMDVLTRTVRRAGKKVDLQPREF 156 Query: 155 RILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 R+LEYL+ + + V +T + ++ FD + NV++ HIS+LR K+ + + Sbjct: 157 RLLEYLIRHSDQVVTRTMLLENVWEYHFDP--QTNVIDVHISRLRSKIDRDFDKPLLKTV 214 Query: 214 RFLGYSI 220 R GY++ Sbjct: 215 RGAGYTL 221 >gi|330447113|ref|ZP_08310763.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491304|dbj|GAA05260.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 230 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/232 (25%), Positives = 104/232 (44%), Gaps = 26/232 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD D + D + LEGF+ +E Q + D S+I+ L+ V+ Sbjct: 4 ILLVDD-----DVELTALLKDILELEGFDVVEANNGQQGLEKVD-SSIDLILLDVMMPVM 57 Query: 62 ---ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R +R P++ ++ + + G DD + KP RE+LAR+ A+ RR Sbjct: 58 NGTEMLRRLRESHTTPVMMLTAKGDEIDRILGLELGADDYLPKPFSDRELLARMRAVLRR 117 Query: 119 LKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + +N++A I ++ ++ + + E +L Y + + G+ VAK Sbjct: 118 TQGNNDKAANKADKLTYQDIVIYPGRQEVFCHDQAIEMTGTELALLSYFVQHPGQIVAKE 177 Query: 172 QIFSAIYG----LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 + + G FD A ++ H+S +RKKL +L P + + R GY Sbjct: 178 TLSLEVLGKRLAQFDRA-----IDMHVSNIRKKLPERLDGKPRIKTLRGKGY 224 >gi|295092131|emb|CBK78238.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 230 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 13/144 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S +P++ ++ + + +G DD + KP E +ARV ++ RR + Sbjct: 67 IREKSNIPILMLTAKSDSLSKVRGLRAGADDYLTKPFDVDEFVARVISLIRRSTQFSVID 126 Query: 127 ETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179 +T V+ D + F LP +E +L YL N+GK + K QI+ A++ Sbjct: 127 DTFGQLVYKGLEINLDEHSVTTEKGTFELPHKEFELLLYLARNQGKILTKKQIYEAVWNE 186 Query: 180 --LFDEAVEENVVESHISKLRKKL 201 FD+A N++ ISKLRKK+ Sbjct: 187 EYCFDDA---NIM-VMISKLRKKI 206 >gi|255013596|ref|ZP_05285722.1| two-component system response regulator [Bacteroides sp. 2_1_7] gi|262381792|ref|ZP_06074930.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|298375645|ref|ZP_06985602.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19] gi|262296969|gb|EEY84899.1| two-component system response regulator [Bacteroides sp. 2_1_33B] gi|298268145|gb|EFI09801.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 9/135 (6%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 P+I ++ + + + D+G DD + KP +E+ AR+ A+ RR S N + + Sbjct: 74 HAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRR---SGNESVHMAL 130 Query: 132 RVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 R DP G+V L +E R+LEY + N+G +++ + ++ D Sbjct: 131 RCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNVWDK-DFDTN 189 Query: 187 ENVVESHISKLRKKL 201 NVV+ +++ LR K+ Sbjct: 190 TNVVDVYVNYLRTKI 204 >gi|253579795|ref|ZP_04857063.1| two-component system response regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251848794|gb|EES76756.1| two-component system response regulator [Ruminococcus sp. 5_1_39BFAA] Length = 230 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 17/146 (11%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + +P++ + + + +G DD + KP E++AR+A++ RR N +A Sbjct: 67 IRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNQQA 126 Query: 127 ETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G I+ + + R F LP +E +L Y ++GK + K QI+ ++ Sbjct: 127 --GAIQKLNFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVW 184 Query: 179 G---LFDEAVEENVVESHISKLRKKL 201 G +D++ N++ + IS+LRKKL Sbjct: 185 GEEYFYDDS---NIM-AIISRLRKKL 206 >gi|228906400|ref|ZP_04070283.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228853216|gb|EEM97990.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 230 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 8/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTNE 121 Query: 122 SNNRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G V+ + + V E L E +L + + +++ Q+ I+GL Sbjct: 122 HKQIQYHGI--VWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 + E+ ++SHI LR KLR K F P+D K G W Sbjct: 180 -NTNTEDRTIDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 220 >gi|168704604|ref|ZP_02736881.1| phosphate regulon response regulator PhoB [Gemmata obscuriglobus UQM 2246] Length = 236 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 33/236 (13%) Query: 1 MFVLIDDRALV--------KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52 + ++ D+R L K+GY DG LEG + +A DV ++ Sbjct: 6 ILIIEDERGLTQTLTWYFNKEGYEVTVSGDG--LEGLRKAQ-------TALPDVVLLDLN 56 Query: 53 LIGKGEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109 L G L++ R +RA + +P+I I+ + + G DD V KP +++ +L Sbjct: 57 L--PGMNGLDVCRELRAGERTRDIPIIMITAKTDETDQVVGYSLGADDYVGKPFNNKILL 114 Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV------QGEVFPLPRRERRILEYLMAN 163 +V A+ RR + ++E G + +S + V + E L E R+LE L+ Sbjct: 115 HKVKALLRR---AQGQSEPGDVTDYSGVKIDRVRHRVTFEEEALDLTPTEFRLLECLVRQ 171 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 G+ ++ Q+ A G + V E ++ HI LR+KL G D +++ R +GY Sbjct: 172 PGRAFSRKQLMEAAIG-DNSIVLERTIDVHIKTLRQKLTKAGGSADLIETVRSIGY 226 >gi|167745950|ref|ZP_02418077.1| hypothetical protein ANACAC_00645 [Anaerostipes caccae DSM 14662] gi|167654465|gb|EDR98594.1| hypothetical protein ANACAC_00645 [Anaerostipes caccae DSM 14662] Length = 227 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 70/140 (50%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IRA+ +P+I +++ + ++ FD G DD + KP +E+ R+ A R + + Sbjct: 69 LCRTIRANYSIPVIFLTNLTDEEIMIESFDCGGDDYITKPYLLKELEMRIRARIRNSRCT 128 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 T + V ++ + + L E IL +LM ++G + +I+ A++G + Sbjct: 129 VPSCRTPGLSVDNNEKQAYIGNLPLNLTVNEFEILSFLMDHKGIPYRQEEIYRAVWG--E 186 Query: 183 EAVEENVVESHISKLRKKLR 202 + ++ I ++RKK++ Sbjct: 187 SCYNTHSIQILIMRIRKKIQ 206 >gi|153941442|ref|YP_001391616.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|170754689|ref|YP_001781933.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|152937338|gb|ABS42836.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|169119901|gb|ACA43737.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|295319648|gb|ADG00026.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 226 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 5/164 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R S +P+I ++ ++ + D+G DD + KP E+LAR+ ++ Sbjct: 61 LEVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120 Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V+ + E G + + L RE +L+ LM N+ + ++ + Sbjct: 121 VTVKKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G +D E NV++ +I LR K+ + + + R +GY I Sbjct: 181 VCG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223 >gi|34496048|ref|NP_900263.1| two-component system response regulator [Chromobacterium violaceum ATCC 12472] gi|34101902|gb|AAQ58269.1| probable two-component system response regulator [Chromobacterium violaceum ATCC 12472] Length = 218 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 76/160 (47%), Gaps = 7/160 (4%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LEL R RA VP+I I+ L L D G DD + KP E+++RV A+ RR Sbjct: 60 LELLRAWRARQITVPVIMITASADLSDKLAGLDDGADDYLCKPFAVSEMVSRVRAVCRRS 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ G + + + G L RE R+L L + + V+KT + + Sbjct: 120 ARQASEIWSLGALSLKPSAHLAWLDGSALDLSPREFRLLVELARDPSRIVSKTLLGQRLE 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 L D V+ +E H+S LR+ K+G + + + R +GY Sbjct: 180 PLGD-VVDGATIEVHLSNLRR----KIGAERIRTVRGVGY 214 >gi|78046368|ref|YP_362543.1| two-component system response regulator KdpE [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034798|emb|CAJ22443.1| two-component system response regulator KdpE [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 238 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 25/173 (14%) Query: 51 AFLIGKGEKVL------------ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98 A L G+G +++ E+ R IR S VP+I ++ + D+G +D Sbjct: 48 ALLAGQGAELVVLDIGLPDRDGHEVLREIRQWSNVPVIMLTVRAGETEKVAALDAGANDY 107 Query: 99 VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLP 150 V KP +E++AR+ ++ R+ + E+ VF DG R+ + GE PL Sbjct: 108 VTKPFGVQELMARIRSLLRQAGAGSTVEES----VFDDGRLHIHLGLREVTLHGEAVPLS 163 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 R+E +L L+ + G+ V + Q+ ++G E + + + + KLR+KL++ Sbjct: 164 RKEYALLALLLKHAGRVVTQPQLLREVWGPTHEE-DTHYLRILVGKLRQKLQD 215 >gi|332975278|gb|EGK12178.1| DNA-binding response regulator [Kingella kingae ATCC 23330] Length = 226 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/197 (26%), Positives = 88/197 (44%), Gaps = 36/197 (18%) Query: 47 SAIEAFLIGKGEKV------------LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94 S ++ L G+G V L++ + +RA S++P+I ++ + + G Sbjct: 36 SGVQEILNGQGYDVVVLDSMMPKMNGLDVLKTVRAQSKIPVIMLTAKGDDIDRIIGLEMG 95 Query: 95 VDDVVNKPIHHREILARVAAIYRRLK-------VSNNRAETGPIRVFSDGRDPEVQGEVF 147 DD V KP RE+LAR+ AI RR + SN+ +G + ++ R + Sbjct: 96 ADDYVPKPCQPRELLARINAILRRSQQNTEASSTSNSIVASG-VTLYPSKRQATIGDTAL 154 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV------VESHISKLRKKL 201 L E +LE LM + G+ V+K L EA++ + ++ HIS +R KL Sbjct: 155 ELTSTEFNLLEVLMRHAGQVVSKD-------ALSQEALDRKLAKFDRSIDVHISSIRHKL 207 Query: 202 RNKLGFDPVDSKRFLGY 218 + + + R LGY Sbjct: 208 GDA---SLIQTVRGLGY 221 >gi|302671203|ref|YP_003831163.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302395676|gb|ADL34581.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 230 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 16/166 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNN 124 +R ++ +P+I IS + + D G DD + KP + E +ARV + RR + Sbjct: 68 MRKNNNIPVIIISARDTDPDKILGLDLGADDYMIKPFNPLEAVARVRSNLRRFHALKGDL 127 Query: 125 RAETGPIRVFSDGR-DPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + +TG I D + D E QGE L E +++E M N GK K +I+ ++ Sbjct: 128 QPQTGKIIELLDLKLDTEACILYRQGEKIELTSNELKMMELFMENPGKVFTKEKIYEYVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP---VDSKRFLGYSID 221 G D V V +++I KLR+KL DP + + R LGY ++ Sbjct: 188 G--DTYV---VADNNIMVAISKLRSKLCDDPSAYIRTVRGLGYRME 228 >gi|289579246|ref|YP_003477873.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289528959|gb|ADD03311.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 231 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 12/150 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IR S VP++ ++ ++ F G DD + KP RE++ RV AI RR Sbjct: 63 ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRR--- 119 Query: 122 SNNRAETGPIRVFSD--------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +N+ + F++ + +G V L E +IL++L+ N + + ++ Sbjct: 120 TNDDVPLAEVISFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREEL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + G FD + +++HI LR+K+ + Sbjct: 180 IEKVMG-FDYEGYDRTIDAHIKNLRQKIED 208 >gi|295689826|ref|YP_003593519.1| winged helix family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295431729|gb|ADG10901.1| two component transcriptional regulator, winged helix family [Caulobacter segnis ATCC 21756] Length = 231 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 106/216 (49%), Gaps = 21/216 (9%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLE--FEEWLQSSAREDVSAIEAFLIGK--GEKVLEL 63 R+LVK G+ +++ F++LE + W S DV ++ ++G+ G +L Sbjct: 18 RSLVKAGF---------TVDLFDTLEDGWHAW--RSVTYDVVILD-IMLGRENGLDLLAQ 65 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +QV ++ + S+ + + G DD + KP E++AR+ A+ RR ++ Sbjct: 66 ARAAGLRTQVLML--TALGSVDQRVQGLERGADDYLVKPFAIEELVARLRALGRRPDLTA 123 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G I R+ V PL R E +LE + + + V K Q+ +++ L D+ Sbjct: 124 DVLRYGDIEYDQGAREICVGEARLPLSRGESIVLERFLRHPDRVVTKAQLGDSLHSL-DQ 182 Query: 184 AVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218 +N ++ H+ ++R+K+ +LG D + + R LGY Sbjct: 183 DYTDNSIQVHVHRVRRKM-AELGADVTIRALRGLGY 217 >gi|238923975|ref|YP_002937491.1| response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Eubacterium rectale ATCC 33656] gi|238875650|gb|ACR75357.1| response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Eubacterium rectale ATCC 33656] gi|291524721|emb|CBK90308.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291528957|emb|CBK94543.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 230 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/205 (23%), Positives = 92/205 (44%), Gaps = 9/205 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ + + EE L + I ++ E Sbjct: 6 LVVDDEKLIVKGIRFSLLQDGMEVDC--AYDGEEALNMAKANSYDMILLDVMLPKMDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 + + IR S VP++ ++ + + G DD + KP + E+ AR+ AI RR Sbjct: 64 VCQAIREFSDVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSPE 123 Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +V ++ E G I++ D R + L RE +LE L+ N K ++ + Sbjct: 124 RAPQVQSSVIEKGDIKLDCDSRRLFINDNEINLTAREFELLEILIKNENKVYSRESLLKI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++G D + V+ H+ +LR+K+ Sbjct: 184 VWG-EDYPGDVRTVDVHVRRLREKI 207 >gi|228934444|ref|ZP_04097279.1| hypothetical protein bthur0009_29000 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825081|gb|EEM70878.1| hypothetical protein bthur0009_29000 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 245 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 5/160 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R R + P++ ++ + + FD+ DD V KP + +L RV A+ RR Sbjct: 88 ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 147 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + E L +E IL L+ N G+ ++ I S ++G + Sbjct: 148 VAKELHYGKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG-Y 206 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + + V +HI LR KL + + + + R +GY ++ Sbjct: 207 DFDGDGSTVHTHIKNLRAKLPDNI----IKTVRGVGYRLE 242 >gi|114797709|ref|YP_760024.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] gi|114737883|gb|ABI76008.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] Length = 227 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKP-IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 FD+G DD + KP I + A + R S E G + V + V GE L Sbjct: 91 FDAGADDYLTKPFITEELLARLRALLRRAAGHSAATIECGKLMVDTRAARATVNGEPIKL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFD 208 E R+L YLM ++G+ V +T++ IY FD + N +E I +LR+ K+G D Sbjct: 151 TAHEYRVLSYLMHHQGRVVPRTELVEHIYDQDFDR--DSNTIEVFIGRLRR----KIGQD 204 Query: 209 PVDSKRFLGYSI 220 + ++R LGY + Sbjct: 205 RIQTERGLGYRL 216 >gi|114799615|ref|YP_761818.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] gi|114739789|gb|ABI77914.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] Length = 233 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 93/210 (44%), Gaps = 15/210 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLI---GKG 57 VLIDD +V + + D + F S E + +L S+ + VS + L G Sbjct: 3 IVLIDDDRMVLETITLGWPDPADKFDTFESFEALKPFLYSADFQSVSCVILDLQLPDASG 62 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +VL IR S VP+I +S + D + G+DD V KP +E+ AR + + R Sbjct: 63 SQVLAE---IRRLSDVPIIMLSGWGDADFRADIINRGIDDYVLKPASSKELHARASRLTR 119 Query: 118 RLKVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G + + R G+V L E +L+ L GK V++ Sbjct: 120 KASAQPLADLPAILTIGNVEYLQEDRALRRAGQVIELTHAEASLLDALAVAGGKPVSRND 179 Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKL 201 ++ +G + + E V+E++IS+LR KL Sbjct: 180 LYFQSFGRPYKDG--EKVLETYISRLRHKL 207 >gi|325928496|ref|ZP_08189687.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325541213|gb|EGD12764.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] Length = 185 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 5/163 (3%) Query: 61 LELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +E+ R +R A Q P++ ++ SL L FDSG DD + KP +E+ R+ A+ RR Sbjct: 20 IEVCRKLRNEARKQTPVLMLTARDSLDNKLAGFDSGADDYLIKPFALQEVEVRLNALSRR 79 Query: 119 LKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + R ETG + D + +G++ L +IL+ LM V + ++ + + Sbjct: 80 GKGVHTRVLETGDLEYNLDTLEVRRRGKLLQLNPTALKILQALMEASPAVVTRQELETRV 139 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +E + + + HI LR + + ++ +GY I Sbjct: 140 WG--EELPDSDSLRVHIHGLRAVVDKPFDVPMIQTRHGIGYRI 180 >gi|309790146|ref|ZP_07684718.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308227731|gb|EFO81387.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 245 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 6/140 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA S VP++ ++ + + F+ G DD + KP E++ARV +I RR++ + R Sbjct: 84 IRAQSDVPIVILTSRDGTEDVVHGFELGADDYITKPFKTVELIARVESILRRVEGYSARR 143 Query: 127 ETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +RV D V+G L E +L +L AN G+ + +F ++G + Sbjct: 144 APPVVRVGELEIDEPRHRVSVRGSDVNLTPMEFELLYFLAANAGQVFDRETLFREVWG-Y 202 Query: 182 DEAVEENVVESHISKLRKKL 201 + E N+V+ + +LR+K+ Sbjct: 203 EYVGETNLVDVCVRRLREKV 222 >gi|295394513|ref|ZP_06804736.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972692|gb|EFG48544.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 252 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 17/172 (9%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ +A +P++ ++ + G DD V KP E++AR+ A+ RR + Sbjct: 76 RLRQAGKHMPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTHALDE 135 Query: 125 RAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + D + G L E ++L YLM N + ++K+QI ++ Sbjct: 136 EDDAVLNAGDLELDDDTHEVRRAGIYIDLSPTEFKLLRYLMLNANRVLSKSQILDHVWE- 194 Query: 181 FDEAVEENVVESHISKLRKKL----RNKLGFDPVD--------SKRFLGYSI 220 +D + +VES+IS LR+K+ +P+D +KR +GY + Sbjct: 195 YDFGGDTGIVESYISYLRRKIDVAPETDEAGNPIDMEWTPMIQTKRGVGYML 246 >gi|291295420|ref|YP_003506818.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290470379|gb|ADD27798.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 219 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 68/126 (53%), Gaps = 6/126 (4%) Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRER 154 DD + KP E++AR+ A+ RR ++ + P + + + R QGE+ L +E Sbjct: 97 DDYLPKPFALAELVARLKALGRRGEIKPQVLQISPQVELALEHRQVRRQGELVRLTAKEY 156 Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214 +LE L N+G+ + +I I+G EA + N+++ ++ K LR +LG D +++ R Sbjct: 157 LVLELLALNKGRVFTREEILERIWGPGFEA-DSNLIDVYV----KNLRKRLGEDVIETVR 211 Query: 215 FLGYSI 220 +GY + Sbjct: 212 GVGYRL 217 >gi|251797128|ref|YP_003011859.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544754|gb|ACT01773.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 231 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 9/149 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + + A +P++ ++ + + + G DD + KP RE++ R+ I RRL Sbjct: 63 LDICKQVTAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRRLA 122 Query: 121 VSNNRA-ETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + E P I V R +GE L +E +L L+ RG+ + + Sbjct: 123 QAQAPVKEAAPSVIGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRIFTRAE 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + +++G +D + V++HI +LRKKL Sbjct: 183 LLESVWG-YDFPGDMRTVDTHIQRLRKKL 210 >gi|182417343|ref|ZP_02948678.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium butyricum 5521] gi|237668463|ref|ZP_04528447.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378773|gb|EDT76295.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium butyricum 5521] gi|237656811|gb|EEP54367.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium butyricum E4 str. BoNT E BL5262] Length = 231 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 23/207 (11%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R LVK + G +E FN+ E L+ + + ++ G E+ + I Sbjct: 15 RYLVK----TFLENTGYEVEDFNNGEL--LLEKFQIKPCDMVILDVMMPGSDGFEICKKI 68 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDS---GVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R S VP+I ++ + T +D+ G DD KP ++ RV AI+RR++ +N Sbjct: 69 REESIVPIIMLT---ARDTDIDYITGITLGSDDYFTKPFSPMSLVMRVKAIFRRIEFEHN 125 Query: 125 ----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G I + + + E L E +L+YL N + V++ ++ Sbjct: 126 INIEKNIPISELKFGNITINLHNKIVTFKDENLDLTPNEYNLLKYLFENCERAVSREELL 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 I+G +D VE + + +LRKK+ Sbjct: 186 DKIWG-YDSEVETRAADDTVKRLRKKI 211 >gi|37523780|ref|NP_927157.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35214785|dbj|BAC92152.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 611 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 3/151 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130 ++P++ ++ + + D+G DD V KP E+ AR+ A+ RR + E GP Sbjct: 72 RMPVLLLTGLDASTDKVAGLDAGADDYVVKPCDLSELAARIRALLRRGGAALPPVLEWGP 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 +R+ + + QG+ L +E +LE + G+RV + F+E EE+ V Sbjct: 132 LRLDPNTCEVSYQGQPLHLTPKEYNLLELFLRG-GRRVYSRRAIVDHLWPFEEPPEEDTV 190 Query: 191 ESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++H+ LR KLR D +++ LGY + Sbjct: 191 KAHVKGLRHKLRAVGAPADLIETVYGLGYRL 221 >gi|47566630|ref|ZP_00237452.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47556660|gb|EAL14992.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 235 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR+ S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRSVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 125 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIQNAIVTKRGYGYAL 225 >gi|325478239|gb|EGC81358.1| putative cell cycle response regulator CtrA [Anaerococcus prevotii ACS-065-V-Col13] Length = 222 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 5/154 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 + IR + P+I ++ + + + F G DD + KP +LAR+ A RL N Sbjct: 69 KTIRDDIKTPIIILTAKNTKEDIMRGFGLGADDYITKPFDMDILLARIKARIGRL---NQ 125 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + D + E + E RIL++L N+G + K +I I+ D + Sbjct: 126 EIYYKKTKFDFDRFLITKECENVQMTSTEARILKFLYDNKGIFLTKEKILFNIFSSLDTS 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E VV SHI +R+KL DP+++K +GY Sbjct: 186 --ERVVVSHIYNIRQKLLEINADDPIENKWKVGY 217 >gi|323485294|ref|ZP_08090643.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323694050|ref|ZP_08108232.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323401330|gb|EGA93679.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323501906|gb|EGB17786.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 223 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 6/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA S+VP+I IS + + G DD + KP + A+V A+ RR ++ Sbjct: 67 IRAVSRVPVIFISSASDNLNIVMAMNMGGDDFIAKPFDLTVLTAKVQALLRRTYDFAGQS 126 Query: 127 ----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 G + DG E L + E RIL L+ ++GK V++ + + ++ D Sbjct: 127 RLIEHRGAVFNCDDGT-LTFGSEKIELTKNEHRILMVLLESKGKIVSRDVLMTRLWE-SD 184 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V++N + +I++LRKKL D + +K+ GY I Sbjct: 185 SYVDDNTLTVNITRLRKKLEQAGLSDFITTKKGSGYLI 222 >gi|319955614|ref|YP_004166881.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] gi|319424274|gb|ADV51383.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 11/154 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR+ P+I ++ + + G DD + KP RE+LARV A+ RR Sbjct: 61 IEICKKIRSQKNTPIIMLTAKSEEIDRVLGLEIGADDYITKPFSIRELLARVKAVLRRTD 120 Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + S+ AE I + D R + + L +E +L + +N G+ +T Sbjct: 121 IKPIPQKDTSSILAEGLSIDI--DKRKVILNDKKIELSPKEFELLVLMASNPGRNYTRTD 178 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 + + I+G E E+ V SHI++LR K+ + + Sbjct: 179 LLNMIWGYNFEGY-EHTVNSHINRLRAKIESDMA 211 >gi|313144025|ref|ZP_07806218.1| two-component regulator [Helicobacter cinaedi CCUG 18818] gi|313129056|gb|EFR46673.1| two-component regulator [Helicobacter cinaedi CCUG 18818] Length = 223 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 13/152 (8%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 + P++ +S S++ L F G DD V+KP + +L R+ A R S E I Sbjct: 69 RTPVVIMSSKSSVENELHAFKEGADDFVSKPFNAEVLLVRIQARLRFWGSSVIEIEDLVI 128 Query: 132 -----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 ++ G++ EV+G+ F +L +L +R + V+K Q+ AI+ E V Sbjct: 129 NPDEEKITYKGQEIEVKGKPF-------EVLTHLARHRDQIVSKEQLLDAIWE-EPELVT 180 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 NV+E I+++R+K+ L +++ R GY Sbjct: 181 PNVIEVAINQIRQKMDKPLNIGTIETVRRRGY 212 >gi|311898734|dbj|BAJ31142.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 263 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 13/163 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----RLKVS 122 IRA S VP+I ++ +++ + + G DD V KP E+LAR+ A+ R R Sbjct: 69 IRAGSGVPVIMVTARADIRSRIHGLNLGADDYVVKPYDMGELLARIHAVARRGAPRAGED 128 Query: 123 NNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + TGP + + + R V+G PL R+E +L L + G + QIFS + Sbjct: 129 SGPEPTGPLASRGVEIDRERRRVSVEGRDVPLTRKEFDLLALLAQSPGVVYRREQIFSEV 188 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E +E H+ LR KL G V++ R +GY I Sbjct: 189 WRSGWEG-NGRTLEVHVGSLRTKL-GLPGL--VEAVRGVGYRI 227 >gi|301310264|ref|ZP_07216203.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3] gi|300831838|gb|EFK62469.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 9/135 (6%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 P+I ++ + + + D+G DD + KP +E+ AR+ A+ RR S N + + Sbjct: 74 HAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRR---SGNESVHMAL 130 Query: 132 RVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 R DP G+V L +E R+LEY + N+G +++ + ++ D Sbjct: 131 RCGDLVLDPPSHRAIRNGQVIDLTVKEYRLLEYFIQNQGTALSRMNLLKNVWDK-DFDTN 189 Query: 187 ENVVESHISKLRKKL 201 NVV+ +++ LR K+ Sbjct: 190 TNVVDVYVNYLRTKI 204 >gi|300690245|ref|YP_003751240.1| response regulator, cheY family [Ralstonia solanacearum PSI07] gi|299077305|emb|CBJ49931.1| putative response regulator, CheY family [Ralstonia solanacearum PSI07] Length = 235 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 28/222 (12%) Query: 8 RALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSS--AREDVSAIEAFLIGKGEKVLELP 64 RAL + G++ DG++ E F S EF+ + R+D A+ A + + ++ Sbjct: 18 RALAQSGFVVERAADGLAAEAFLASGEFDAVVLDLRLPRKDGFAVLADMRARDDRT---- 73 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 P++ ++ +L + ++G DD + KP E+ AR+ A+ RR S Sbjct: 74 ---------PVLILTAQGALDERVRGLNAGADDFLTKPFALSELEARLMALIRR---SRG 121 Query: 125 RA----ETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 RA GP+ F GR + GE L RE L L+ G+ ++K +F ++ Sbjct: 122 RAFPRLRCGPLE-FDTGRKAFLLAGEPLSLTPREHAALSALLHKTGQPISKVHLFDKVFN 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 L D + VE + +LRKKL G V + R LGY ++ Sbjct: 181 L-DSDSSPDAVEVVVHRLRKKLAGS-GVQIV-TVRGLGYLLE 219 >gi|293611083|ref|ZP_06693382.1| predicted protein [Acinetobacter sp. SH024] gi|292826735|gb|EFF85101.1| predicted protein [Acinetobacter sp. SH024] gi|325123407|gb|ADY82930.1| transcriptional regulator protein (OmpR family),response regulator in two-component regulatory system with BaeS, regulates RNA synthesis [Acinetobacter calcoaceticus PHEA-2] Length = 228 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 3/142 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +R S +P+I ++ + + G DD V KP +E++ARV A+ RRL+ Sbjct: 61 LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLE 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 121 RKAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHINPD 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 FD V + V++SHI LR+K+ Sbjct: 181 SFD--VADRVIDSHIKNLRRKI 200 >gi|220906550|ref|YP_002481861.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863161|gb|ACL43500.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 243 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 22/150 (14%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 +R S VP+I ++ + + + G DD V KP +E+ AR+ ++ RR++ Sbjct: 71 LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKTSTSG 130 Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 VSN R +T +V+ + G F L LE L++ G+ ++++ Sbjct: 131 IPSSGVIAVSNLRIDTNKRQVYKGDERIRLTGMEFSL-------LELLVSRSGEAFSRSE 183 Query: 173 IFSAIYGLFDE-AVEENVVESHISKLRKKL 201 I ++G E V+ VV+ HIS+LR KL Sbjct: 184 ILQEVWGYTPERHVDTRVVDVHISRLRAKL 213 >gi|306520551|ref|ZP_07406898.1| two-component system response regulator [Clostridium difficile QCD-32g58] Length = 210 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 11/146 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + ++IR S VP+I ++ L FD DD + KP ++ RV AI RR Sbjct: 64 VCKMIRKSSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRR---- 119 Query: 123 NNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +N+ VF + E+ GE L +E IL+ L+ + + + + + Sbjct: 120 SNKTINDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITREGLLDS 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR 202 I+G +D + +V++HI +RKK R Sbjct: 180 IWG-YDYYGDTRIVDAHIKNIRKKYR 204 >gi|153956141|ref|YP_001396906.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219856471|ref|YP_002473593.1| hypothetical protein CKR_3128 [Clostridium kluyveri NBRC 12016] gi|146348999|gb|EDK35535.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219570195|dbj|BAH08179.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 228 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 8/161 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 ++IR +P+I IS + ++G DD + KP +LA++ A+ RR + Sbjct: 65 KLIRKQYSIPVIIISARSEDSDQIRGIENGADDYITKPFSIGVLLAKINAMLRRKAEYQK 124 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 G + + D + L + E R+L LM N G+ V++ Q+ L+D+ Sbjct: 125 GGVSIGTLCLNEDTMRISYKEVGTELSKNEYRVLRLLMKNAGQIVSREQLLEE---LWDD 181 Query: 184 A--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 V++N + +I++++KKL +LG + + +KR +GY D Sbjct: 182 VSFVDDNTLTVNITRVKKKLM-ELGLQNCISTKRGVGYVFD 221 >gi|114797742|ref|YP_761056.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] gi|114737916|gb|ABI76041.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] Length = 220 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/220 (22%), Positives = 102/220 (46%), Gaps = 7/220 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D L+ D A D G ++ E + W + + I + + + + Sbjct: 4 LLVEDEVLIADDISAALKDSGFMVDLARDGE-DAWFKGDTEPYDAIILDLGLPRMDGLSV 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 L R A P++ +S S +D ++G DD + KP E++ R+ A+ RR + Sbjct: 63 LKRWRAAGMITPILILSARGSWMERVDGIEAGADDYLPKPFEMAELIVRLRALIRRAAGM 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + V + G+ + E R+++YL+ N + V+ ++ ++G+ Sbjct: 123 AQPVLQAGDLMVDTRRMTIAYAGQPVRVTPLEFRLVDYLVHNMNRTVSAGELSEHLHGVE 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + N +E+ +S+LR+ KLG + ++R GY I+ Sbjct: 183 DTG-DTNAIEAIVSRLRR----KLGPGVISTRRGFGYVIE 217 >gi|127511031|ref|YP_001092228.1| two component transcriptional regulator [Shewanella loihica PV-4] gi|126636326|gb|ABO21969.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/224 (24%), Positives = 108/224 (48%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D A + + F + G ++E + L +S + D+ ++ L G K+ Sbjct: 3 ILLVEDDATTTEYVVKGFAEQGHNIETASDGHQGLLLATSMQYDLVILDRMLPQLDGLKL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R +Q P++ +S + + +G DD + KP E+L R + +R Sbjct: 63 LAALRA--TGNQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGN 120 Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + E G + + R + G L +E ++L+YLM + + +++T +F A++ Sbjct: 121 SAPAQTELKVGELVMELLTRKVTLAGSEILLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180 Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 FD NV++ HI+KLR+K +LGF + +++ R GY + Sbjct: 181 DYHFDP--RTNVIDVHIAKLRRKF-EELGFGELIETVRGAGYRL 221 >gi|47564389|ref|ZP_00235434.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47558541|gb|EAL16864.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 69 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|330949891|gb|EGH50151.1| response regulator protein [Pseudomonas syringae Cit 7] Length = 220 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 20/203 (9%) Query: 8 RALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66 +AL ++GY + DG S L S F+ + +S E L R+ Sbjct: 18 QALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPTLSGFEV-----------LRRL 66 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 + S +P++ ++ + + + DSG DD + KP E+ AR+ A+ RR S RA Sbjct: 67 RHSGSTLPVMILTARDATEDRIIGLDSGADDYLVKPFDVSELKARLRALLRR---SAGRA 123 Query: 127 ----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 E IR+ + L +E ++L L++ G+ + + ++ +YG ++ Sbjct: 124 KVLIEHNGIRLDPSTQQVSYHDAAVALTPKEYQLLYELLSPPGRVMTRERLMQLLYG-WN 182 Query: 183 EAVEENVVESHISKLRKKLRNKL 205 E E N +E HI LRKK + L Sbjct: 183 EEAESNTLEVHIHHLRKKFSSTL 205 >gi|331085187|ref|ZP_08334273.1| hypothetical protein HMPREF0987_00576 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407970|gb|EGG87460.1| hypothetical protein HMPREF0987_00576 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 233 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 14/169 (8%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS-LQTTLDFFDSGVDDVVNK 101 R D S I L+ +++ + IR HS VPLI IS S + TL G DD + K Sbjct: 45 RTDFSMILLDLMIPKINGMDVMQHIREHSVVPLIIISAKDSEIDKTLGL-SLGADDYITK 103 Query: 102 PIHHREILARVAAIYRRLKVSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRE 153 P E+LAR+ A RR + +E P R+ SD + G L +E Sbjct: 104 PFSVVEVLARIKANIRRRNQYDQGSEDVPKRLTAGELVMNLSDYTLTK-SGRRVELTAKE 162 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAV-EENVVESHISKLRKKL 201 IL+ LM + K K QI++ ++ D + +EN V HIS+LR K+ Sbjct: 163 YEILKLLMQHPKKVYTKEQIYALVWK--DAYLGDENAVNVHISRLRNKI 209 >gi|296170765|ref|ZP_06852337.1| two component response regulator IrlR [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894580|gb|EFG74317.1| two component response regulator IrlR [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 222 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 5/167 (2%) Query: 57 GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G E+ R +RA + P++ ++ D FD G DD + KP R ++AR+ A+ Sbjct: 56 GHSGYEVLRRMRARNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRAL 115 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQI 173 RR V A + D VQ P L RE +LE+LM N+ V K I Sbjct: 116 VRR-GVPQRPAVLTAGSLLLDPARHSVQRGANPITLTPREFGVLEFLMRNKDMVVTKADI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +NVVE ++ LR+K+ G + +++ R +GY + Sbjct: 175 LRNVWDAHYHG-PDNVVEVYVGYLRRKIDIPFGTNTIETIRGVGYRL 220 >gi|294083655|ref|YP_003550412.1| winged helix family two component transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292663227|gb|ADE38328.1| two component transcriptional regulator, winged helix family [Candidatus Puniceispirillum marinum IMCC1322] Length = 234 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 3/143 (2%) Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R+IR H +P++ +S + + +G D + KP E++A + AI RR Sbjct: 62 LARLIRKHHLPMPILVVSGNSGIDDKIAALGAGADGYLTKPFDRYELMANLDAIIRRTNG 121 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ T G + V ++ + L +E RI+E+L +G ++K + +YG Sbjct: 122 HSSAVVTAGNLTVDLSRNYAKIGDKQLNLTGKEFRIVEFLALRKGSVLSKDAFLNHLYGG 181 Query: 181 FDEAVEENVVESHISKLRKKLRN 203 DE E +++ + KLR+KL N Sbjct: 182 IDEP-EPKIIDVFMCKLRRKLDN 203 >gi|262281095|ref|ZP_06058877.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|299768811|ref|YP_003730837.1| response regulator [Acinetobacter sp. DR1] gi|262257326|gb|EEY76062.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|298698899|gb|ADI89464.1| response regulator [Acinetobacter sp. DR1] Length = 228 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 3/142 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +R S +P+I ++ + + G DD V KP +E++ARV A+ RRL+ Sbjct: 61 LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLE 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 121 RKAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHINPD 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 FD V + V++SHI LR+K+ Sbjct: 181 SFD--VADRVIDSHIKNLRRKI 200 >gi|261879166|ref|ZP_06005593.1| response regulator PhoB [Prevotella bergensis DSM 17361] gi|270334265|gb|EFA45051.1| response regulator PhoB [Prevotella bergensis DSM 17361] Length = 231 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 11/140 (7%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A + +P+I ++ + T+ F+ G DD ++KP RE+L RV A+ RR +++R Sbjct: 77 ATANIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRVRAVIRR---TDDRDHE 133 Query: 129 GP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 P + + D + V GE + E +L +L+ +G+ ++ ++ I+ Sbjct: 134 QPTVLRYQGLEMNLDKKTVTVDGEPVAFTKTEFELLRFLLDEKGRVFSRQELIDRIWPK- 192 Query: 182 DEAVEENVVESHISKLRKKL 201 D V + V+ +I++LRKK+ Sbjct: 193 DVLVLDRTVDVNITRLRKKI 212 >gi|302554583|ref|ZP_07306925.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302472201|gb|EFL35294.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 228 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 10/160 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + P+I ++ +++ + + G DD V KP E+LAR+ A+ RR + + Sbjct: 68 IRKRTSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRRTSHEDTSS 127 Query: 127 --ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ET GP+ + R V G V L R+E +L L G + QI S ++ Sbjct: 128 GIETELRLGPVHIELPTRRVSVDGAVIQLTRKEFDLLALLAQRPGVVFRREQIISEVWRT 187 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E +E H++ LR KLR + V R +GY + Sbjct: 188 SWEGTGRT-LEVHVASLRAKLRMPALIETV---RGVGYRL 223 >gi|240948578|ref|ZP_04752951.1| transcriptional regulatory protein [Actinobacillus minor NM305] gi|240297086|gb|EER47657.1| transcriptional regulatory protein [Actinobacillus minor NM305] Length = 221 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 8/138 (5%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 + + P++ ++ +L + F++G DD + KP E++ R+ A+ RR S+ + Sbjct: 68 KENQHTPVLILTARDTLDERILGFNAGADDYLCKPFALMEVVVRLQALIRR---SHQQVS 124 Query: 128 T----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G + + S R + GE L +E R+LE ++ + + +T I +Y +D Sbjct: 125 SEIVIGDLVIDSHTRSVSLDGEDIALTAKEFRLLELFAHHKDRVLPRTLIEEKLYS-WDN 183 Query: 184 AVEENVVESHISKLRKKL 201 V N +E +I LRKKL Sbjct: 184 EVSSNALEVYIHNLRKKL 201 >gi|228908986|ref|ZP_04072816.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228850708|gb|EEM95532.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 223 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 67 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 126 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 127 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 186 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221 >gi|229032183|ref|ZP_04188158.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1271] gi|228729140|gb|EEL80141.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1271] Length = 230 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 7/149 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 LE+ RIIR S VP++ +S + G DD + KP E+ ARV A I R Sbjct: 62 LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K S I++ DP E G+ L +E IL+ + N+ + K QI+ Sbjct: 122 KYSATEETEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 S ++ + ++NV+ H+ +LR+K+ + Sbjct: 182 SLVWN-EEYYGDDNVINVHMRRLREKIES 209 >gi|229060825|ref|ZP_04198180.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228718472|gb|EEL70104.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 69 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|219855228|ref|YP_002472350.1| hypothetical protein CKR_1885 [Clostridium kluyveri NBRC 12016] gi|219568952|dbj|BAH06936.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 231 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 5/166 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +E+ R +R S++P+I ++ + + D G +D + KP E+LAR+ +++ Sbjct: 66 MEVLRRLRQISEIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKS 125 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 NN G +++ + L ++E +L+YLM N+ +++ I Sbjct: 126 NNNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEK 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G +D + N+V+ +I LR K+ +K + + R LGY + Sbjct: 186 VWG-YDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQFRY 230 >gi|165868373|ref|ZP_02213033.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|164715099|gb|EDR20616.1| DNA-binding response regulator [Bacillus anthracis str. A0488] Length = 223 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 67 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 126 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 127 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 186 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221 >gi|221065234|ref|ZP_03541339.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220710257|gb|EED65625.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 219 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 102/238 (42%), Gaps = 43/238 (18%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS----AIEAFLIGKG 57 +L++D ++ AL +G ++ W+Q AR D + + L+ G Sbjct: 3 LLLVEDDTMIGQAVQALLRGEGYVVD---------WVQDGARADTALRGHQYDLVLLDLG 53 Query: 58 ---EKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL---- 109 L++ R +RA P++ + ++ + D+G DD V KP E+L Sbjct: 54 LPEMDGLQVLRQLRARKDATPVLVATARDGVRDRIAGLDAGADDYVIKPYDMDELLARIR 113 Query: 110 -------ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 + A+Y E G I + + R+ V G+ L RE +L+ L+A Sbjct: 114 ALARRAAGHLEAVY----------EHGGIMLNPNTREASVNGQPVTLSGREWAVLQALLA 163 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +++ Q+ +YG DE V N VE +I LRK KLG V + R LGY + Sbjct: 164 RPGATLSRQQLEDKLYGWGDE-VSSNAVEVYIHGLRK----KLGAAAVLNVRGLGYMV 216 >gi|107022380|ref|YP_620707.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|115351235|ref|YP_773074.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|116689327|ref|YP_834950.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|134295368|ref|YP_001119103.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|170697960|ref|ZP_02889043.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170732626|ref|YP_001764573.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|171318223|ref|ZP_02907386.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|172060249|ref|YP_001807901.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|206559652|ref|YP_002230413.1| phosphate regulon two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|105892569|gb|ABF75734.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|115281223|gb|ABI86740.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] gi|116647416|gb|ABK08057.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|134138525|gb|ABO54268.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] gi|169815868|gb|ACA90451.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] gi|170137126|gb|EDT05371.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|171096567|gb|EDT41461.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171992766|gb|ACB63685.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] gi|198035690|emb|CAR51577.1| phosphate regulon two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 233 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 15/159 (9%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122 +P+I ++ Q + + G DD V KP +E++AR+ A+ RR + ++ Sbjct: 76 HIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRAPQLTEDVVSIN 135 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 R + RV + G E++ ++ P E R+L + M + + ++TQ+ ++G D Sbjct: 136 GLRLDPATHRVAAHGDGSEIKLDLGPT---EFRLLHFFMTHPERVHSRTQLLDQVWG--D 190 Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 VEE V+ HI +LR L+ +++ R GY + Sbjct: 191 HVFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229 >gi|328955049|ref|YP_004372382.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] gi|328455373|gb|AEB06567.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] Length = 234 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 25/178 (14%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + RA SQVP+I IS + D+G D + KP E+ A + A+ RR Sbjct: 63 DLIKAARAESQVPIIIISARAEAADKIIGLDAGADGYITKPFDPLEVTAYIRAVLRRGGS 122 Query: 122 SNNRAETGPIRVFSDGR--------DPE-----VQGEVFPLPRRERRILEYLMANRGKRV 168 + ++ R DGR D E GE L E RI+ LM+ G+ Sbjct: 123 HGHATQSLSGR--GDGRIQVGDLEFDTERLCLAKGGEPIALTAAELRIVAALMSRPGRIF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSID 221 K Q+++ + G ++ N V HIS +R KL + DP+ + R LGY ++ Sbjct: 181 TKAQLYACVNGRPCDS-GANSVMVHISNIRAKLED----DPLSPRFIKTVRGLGYRLE 233 >gi|325262900|ref|ZP_08129636.1| DNA-binding response regulator RegX3 [Clostridium sp. D5] gi|324031994|gb|EGB93273.1| DNA-binding response regulator RegX3 [Clostridium sp. D5] Length = 221 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 4/163 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R ++ + P+I ++ ++ D G DD + KP H + +R+AA+ RR Sbjct: 61 DFCRWVKERADTPVIFLTVRDDVRDITRGLDMGADDYITKPFHVAVLESRIAAVLRRTPA 120 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N G IR+ + + + E R+LE LM N+G+ + + I ++ Sbjct: 121 EGGNVLICGNIRLNKEKIQVMLDDKPVDTTALEYRLLEVLMENKGRTLPRNLILDKLWDA 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 V +N + + +LRKKL + + + + R +GY ++ N Sbjct: 181 EGNFVNDNTLTVTVKRLRKKLMDT---EYIVTIRGIGYRMEEN 220 >gi|319796195|ref|YP_004157835.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315598658|gb|ADU39724.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 257 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 15/169 (8%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 L R IR S +P++ ++ + + + G DD V KP RE++ARV I RR + Sbjct: 85 LCREIRKESDIPIVMLTARGEVTDRVVGLELGADDYVPKPFEPRELVARVQTILRRQRST 144 Query: 121 --VSNNRAETGP-IRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 V+N G +RVF D R QGE L E +L L A GK ++ Sbjct: 145 PAVANGHGNNGTQLRVFDGLSIDLDRRQVLRQGERVELTGTEFELLALLAAEPGKVFSRD 204 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I + + G + + V+ +S+LRKKL D + + R GY++ Sbjct: 205 DILNRLRG-HEAELYTRAVDIVVSRLRKKLEP---LDCIKTLRNAGYAL 249 >gi|291459772|ref|ZP_06599162.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str. F0262] gi|291417562|gb|EFE91281.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str. F0262] Length = 233 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 89/204 (43%), Gaps = 25/204 (12%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 LV DGY + F + +E L +E++ + ++ G LEL R IR Sbjct: 23 LVSDGY-----------KVFKAYNADEALLIMKQEEIHLVLLDVMMPGMNGLELCRKIRE 71 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 S +P+I +S + + G DD V KP + E+ ARV + RR N + Sbjct: 72 SSNIPIIMLSAKSADLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRRYTQLNPNSTNE 131 Query: 130 ------PIRVFSDGRDPE---VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 IR + RD ++GE L E IL L ++ GK + +IF ++ Sbjct: 132 FAGSEINIRNMTINRDNHKVVIEGEDVRLTPIEFEILYLLASHPGKVFSTDEIFEKVW-- 189 Query: 181 FDEAVEE--NVVESHISKLRKKLR 202 +E V E N V HI +LR K++ Sbjct: 190 -NEKVYEANNTVMVHIRRLRGKMK 212 >gi|259415203|ref|ZP_05739125.1| two component transcriptional regulator, winged helix family [Silicibacter sp. TrichCH4B] gi|259349113|gb|EEW60867.1| two component transcriptional regulator, winged helix family [Silicibacter sp. TrichCH4B] Length = 240 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/229 (23%), Positives = 101/229 (44%), Gaps = 15/229 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++DD +++ AL D G + + L D++ I+ L +GE Sbjct: 9 LIAIVDDDPNMRETLSALMRDSGFAPICCADIAGFHALGDPPPVDLALIDLRL--RGESG 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L IR ++P++ ++ + ++G DD + KP + RE++AR+ A+ RR Sbjct: 67 LTLAIHIRERYEIPIVMLTGVGDEIDKIIGLETGADDYLIKPFNPRELVARIRAVLRRYG 126 Query: 121 VSNNRAETGPIRVFSDG---------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R P + + G R + +GE PL E R+LEY N + + + Sbjct: 127 HGTARPSVSPGQDIAFGTLRIDVQSRRLLDAEGEEIPLTNAEYRLLEYFAKNPDRVIPRP 186 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV--DSKRFLGY 218 ++ + V+ ++ I +LR+K+ K+ PV ++R GY Sbjct: 187 ELLEELGSDMQRYVDRT-IDVLILRLRRKI-EKVPSKPVHLQTRRAQGY 233 >gi|229122769|ref|ZP_04251978.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228660633|gb|EEL16264.1| DNA-binding response regulator [Bacillus cereus 95/8201] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 69 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|229173212|ref|ZP_04300761.1| Sensor histidine kinase [Bacillus cereus MM3] gi|228610296|gb|EEK67569.1| Sensor histidine kinase [Bacillus cereus MM3] Length = 231 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 13/207 (6%) Query: 27 EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+N + + +E LQ + +V + ++ LE+ + +R ++ VP++ +S Sbjct: 25 EGYNIYKAYDGDEALQIISTYEVDLMVLDIMMPKRNGLEVCQEMRENNTVPILMLSAKAE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135 + +G DD + KP + E++ARV A+ RR N ++ E G IR+ S Sbjct: 85 DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSSKNEDGIIRIRSAEIHK 144 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 +V GE L E IL L +N G+ + +IF ++ D V HIS Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203 Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221 LR KL + G + + +GY I+ Sbjct: 204 NLRDKLETGMNGEKFIHTVWGVGYKIE 230 >gi|229173900|ref|ZP_04301438.1| DNA-binding response regulator [Bacillus cereus MM3] gi|228609538|gb|EEK66822.1| DNA-binding response regulator [Bacillus cereus MM3] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 69 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|187778876|ref|ZP_02995349.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC 15579] gi|187772501|gb|EDU36303.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC 15579] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 4/113 (3%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150 G DD + KP RE++ARV A+ RR N +++ G I + + +G+ L Sbjct: 99 GADDYITKPFSVREMVARVKAVLRRRTTINIESKSYVLGNIVIDFEKHSLTKEGKKIELT 158 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 +E +LE L+ N+GK + + + I+G ++ E V+ HI LRKK+ + Sbjct: 159 LKEFELLEVLIKNKGKVMTRDFLLDTIWG-YEYIGETRTVDVHIRHLRKKIED 210 >gi|184159450|ref|YP_001847789.1| response regulator [Acinetobacter baumannii ACICU] gi|239501705|ref|ZP_04661015.1| response regulator [Acinetobacter baumannii AB900] gi|260557142|ref|ZP_05829358.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|332876292|ref|ZP_08444067.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] gi|183211044|gb|ACC58442.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|193078315|gb|ABO13289.2| transcriptional regulator protein (OmpR family) [Acinetobacter baumannii ATCC 17978] gi|260409248|gb|EEX02550.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|322509364|gb|ADX04818.1| baeR [Acinetobacter baumannii 1656-2] gi|323519388|gb|ADX93769.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332735564|gb|EGJ66616.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] Length = 228 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 3/142 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +R S +P+I ++ + + G DD V KP +E++ARV A+ RRL+ Sbjct: 61 LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLE 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 121 RKAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHINPD 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 FD V + V++SHI LR+K+ Sbjct: 181 SFD--VADRVIDSHIKNLRRKI 200 >gi|169632456|ref|YP_001706192.1| OmpR family transcriptional regulator [Acinetobacter baumannii SDF] gi|169151248|emb|CAO99934.1| transcriptional regulator protein (OmpR family),response regulator in two-component regulatory system with BaeS, regulates RNA synthesis [Acinetobacter baumannii] Length = 228 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 3/142 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +R S +P+I ++ + + G DD V KP +E++ARV A+ RRL+ Sbjct: 61 LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLE 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 121 RKAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHINPD 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 FD V + V++SHI LR+K+ Sbjct: 181 SFD--VADRVIDSHIKNLRRKI 200 >gi|153801779|ref|ZP_01956365.1| transcriptional regulator [Vibrio cholerae MZO-3] gi|124122679|gb|EAY41422.1| transcriptional regulator [Vibrio cholerae MZO-3] Length = 168 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 18/170 (10%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L L + IRA +QV ++ +S ++ + +G DD + KP H E+LAR+ A+ RR Sbjct: 4 LTLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRN 63 Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 L+ ++ +RV+ + E L +E ILE + G ++ Sbjct: 64 IQTHTSNKLRFADLELCLSTMRVYRAEQPIE-------LTAKEISILELFLRKPGHIFSR 116 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +I + ++G+ + + NVV+ ++ +LRKK+ + +KR +GY + Sbjct: 117 ERILANVWGIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 165 >gi|49478095|ref|YP_037336.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196037738|ref|ZP_03105048.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|229092209|ref|ZP_04223390.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|49329651|gb|AAT60297.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196031008|gb|EDX69605.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|228691200|gb|EEL44964.1| DNA-binding response regulator [Bacillus cereus Rock3-42] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 69 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|163847991|ref|YP_001636035.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525873|ref|YP_002570344.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669280|gb|ABY35646.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449752|gb|ACM54018.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 238 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 7/185 (3%) Query: 23 GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGI 78 G++ EG + E LQ S ++V + L+ + + R +RA S +P+I + Sbjct: 28 GLTYEGMRVTVTTEGRSGLQVSEEQEVDLVILDLMLPDIDGMVVCRRLRARSSTLPIIML 87 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGPIRVFSD 136 + +Q + G DD + KP E+LARV A+ RR VS + + + ++ Sbjct: 88 TARGEVQERVQGLQLGADDYIVKPFSFDELLARVYAVLRRAGVSRPSTVLRIAGLTLDTE 147 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 R+ + G L E +LE M + + + + S ++G F + N+VE H+S Sbjct: 148 TREVTLNGRQLELTPTEFALLELFMRHPRRVFTRETLLSRVWG-FTYVGDSNIVEVHMSN 206 Query: 197 LRKKL 201 LR+K+ Sbjct: 207 LREKI 211 >gi|327441682|dbj|BAK18047.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 222 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/214 (26%), Positives = 102/214 (47%), Gaps = 16/214 (7%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+G+ ALF DG +E N L+ E D++ ++ ++ K + V ++ Sbjct: 20 LKKEGFEALFASDG--MEALNLLQQEPV-------DLAIVDV-MMPKMDGVTLTKNLVEI 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 VP++ ++ +L F +G DD + KP +E+L RV AI RR + R++ Sbjct: 70 G--VPVLMLTAKTTLDDKEKGFLAGADDYMVKPFEPKELLFRVRAILRRFQ-KTERSQIK 126 Query: 130 PIRVFSDGRDPEVQ-GE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 + D + EV+ GE V LP +E +L L + + Q+ ++G +D ++ Sbjct: 127 IANMLIDRQTYEVKVGEQVSLLPLKEFELLSILCSRPEVVFTRDQLMEQVWG-YDYDGDD 185 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +HI +LR +L + + R +GY I+ Sbjct: 186 FTLTTHIKRLRSRLEEVNAQVKIQTVRGIGYKIE 219 >gi|325661085|ref|ZP_08149712.1| hypothetical protein HMPREF0490_00445 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472592|gb|EGC75803.1| hypothetical protein HMPREF0490_00445 [Lachnospiraceae bacterium 4_1_37FAA] Length = 233 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 14/169 (8%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS-LQTTLDFFDSGVDDVVNK 101 R D S I L+ +++ + IR HS VPLI IS S + TL G DD + K Sbjct: 45 RTDFSMILLDLMIPKISGMDVMQHIREHSVVPLIIISAKDSEIDKTLGL-SLGADDYITK 103 Query: 102 PIHHREILARVAAIYRRLKVSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRE 153 P E+LAR+ A RR + +E P R+ SD + G L +E Sbjct: 104 PFSVVEVLARIKANIRRRNQYDQGSEDIPKRLTAGELVMNLSDYTLTK-SGRRVELTAKE 162 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAV-EENVVESHISKLRKKL 201 IL+ LM + K K QI++ ++ D + +EN V HIS+LR K+ Sbjct: 163 YEILKLLMQHPKKVYTKEQIYALVWK--DTYLGDENAVNVHISRLRNKI 209 >gi|324327183|gb|ADY22443.1| two-component response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 67 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 126 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 127 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 186 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221 >gi|260768252|ref|ZP_05877186.1| two-component system response regulator QseB [Vibrio furnissii CIP 102972] gi|260616282|gb|EEX41467.1| two-component system response regulator QseB [Vibrio furnissii CIP 102972] Length = 214 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 22/216 (10%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 +L + G++ DG+ + EEW DV ++ L K + + L I Sbjct: 14 SLEQTGWVPELSQDGI--DALYRATSEEW-------DVIVLDLGL-PKLDGLTVLKGIRD 63 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 + P++ +S +L ++ ++G DD + KP E++AR+ A RR S N + Sbjct: 64 ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPV 121 Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 I S D R +V +G+ L E +++ Y M N K +++T++ IY FD Sbjct: 122 MQIGDLSLDTRSSKVMWRGQAINLTALEYKVVAYFMHNPEKVISRTELVEHIYKQDFDR- 180 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E I ++RKK+ + + + R LGY + Sbjct: 181 -DSNTIEVFIGRIRKKIAPNI----IKTVRGLGYQL 211 >gi|237746571|ref|ZP_04577051.1| response regulator [Oxalobacter formigenes HOxBLS] gi|229377922|gb|EEO28013.1| response regulator [Oxalobacter formigenes HOxBLS] Length = 233 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 86/171 (50%), Gaps = 15/171 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G ++L R R +P+I ++ + + D G DD + KP +E++AR+ A+ Sbjct: 64 GMRLLSRIREHREMKTLPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALL 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEV------QGEVFPLPRRERRILEYLMANRGKRVAK 170 RR + RA++ +R + DPE GE+ + E R+L++LMAN + ++ Sbjct: 124 RR--KAPERAKS-LLRAGAVTLDPESCQVKIGNGEI-EMGHSEFRLLKFLMANPDRVFSR 179 Query: 171 TQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Q+ ++ D +EE V+ HI +LRK L+ + + + R +GY + Sbjct: 180 GQLLDKVWSNQLD--IEERTVDVHILRLRKALKGQENL--IRTVRGMGYML 226 >gi|229110657|ref|ZP_04240221.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228672725|gb|EEL28005.1| DNA-binding response regulator [Bacillus cereus Rock1-15] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 69 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|229012458|ref|ZP_04169633.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|229167897|ref|ZP_04295628.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228615537|gb|EEK72631.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228748817|gb|EEL98667.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ + Sbjct: 69 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128 Query: 127 ET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 T G I + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHGTI-IDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFE 186 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 187 GDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|256821572|ref|YP_003145535.1| winged helix family two component transcriptional regulator [Kangiella koreensis DSM 16069] gi|256795111|gb|ACV25767.1| two component transcriptional regulator, winged helix family [Kangiella koreensis DSM 16069] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 9/162 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120 + +R SQVP++ ++ + + G DD + KP + RE+ AR+ I RR + Sbjct: 65 KTVRKESQVPILMLTARGDEIDRIVGLELGADDYIAKPCNPRELTARIRTILRRTENVYS 124 Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + ++ G + + R+ + EV L E IL LM+N G V++ + Sbjct: 125 TKHKKLQSVHLGDVYINPASREVLLNNEVVKLTATEFDILYLLMSNAGTLVSRDDLSEGC 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 G EA + + ++ HIS LR+KL + G + + + R +GY Sbjct: 185 LGRTLEAYDRS-IDMHISNLRRKLGPDTKGDERIKTVRGVGY 225 >gi|261342454|ref|ZP_05970312.1| QseB protein [Enterobacter cancerogenus ATCC 35316] gi|288315092|gb|EFC54030.1| QseB protein [Enterobacter cancerogenus ATCC 35316] Length = 219 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 11/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D L+ DG G S++ F + + SA D ++ L L Sbjct: 3 ILLVEDDKLIGDGIKTGLSKLGFSVDWFTDGKTGQAALYSAPYDAVVLDLTL--PEIDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R R + P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 61 EMLRAWRESGRSEPVLILTARDALNQRVEGLRLGADDYLCKPFALIEVAARLEALVRR-S 119 Query: 121 VSNNRAETGPIRVFSDGRD--PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R+E +V D + G+ L +E +LE LM N G+ + + I +Y Sbjct: 120 HGQTRSELRHGKVMLDPVSLVATLDGDTLVLKPKEFALLELLMRNAGRVLPRKHIEEKLY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D+ V N VE H+ LR+ KLG + + + +GY++ Sbjct: 180 N-WDDDVSSNAVEVHVHHLRR----KLGSEFIRTVHGIGYTL 216 >gi|228928237|ref|ZP_04091278.1| hypothetical protein bthur0010_29360 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228946799|ref|ZP_04109104.1| hypothetical protein bthur0007_29360 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229122717|ref|ZP_04251927.1| hypothetical protein bcere0016_30100 [Bacillus cereus 95/8201] gi|228660768|gb|EEL16398.1| hypothetical protein bcere0016_30100 [Bacillus cereus 95/8201] gi|228812923|gb|EEM59239.1| hypothetical protein bthur0007_29360 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228831284|gb|EEM76880.1| hypothetical protein bthur0010_29360 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 245 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 5/160 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R R + P++ ++ + + FD+ DD V KP + +L RV A+ RR Sbjct: 88 ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 147 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + E L +E IL L+ N G+ ++ I S ++G + Sbjct: 148 VAKELHYGKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG-Y 206 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + + V +HI LR KL + + + + R +GY ++ Sbjct: 207 DFDGDGSTVHTHIKNLRAKLPDNI----IKTVRGVGYRLE 242 >gi|171320020|ref|ZP_02909092.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171094747|gb|EDT39789.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 221 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 7/159 (4%) Query: 65 RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +RA S P++ ++ ++ + G DD + KP +RE+ ARV A+ RR Sbjct: 64 RNLRASGSTTPVLLVTARSAIDDRVSGLGFGADDYLVKPFDYRELEARVQALLRRNSGHA 123 Query: 124 NRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLF 181 N T G + + R E+ G+ L R+E +LE ++A+R +R+ +K ++ + ++ Sbjct: 124 NDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLE-ILASRPQRIFSKDELLNQLFSFG 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E N VE +++++R+KL+ + + R +GY I Sbjct: 183 NEP-SANAVEQYVTRVRRKLQGS--SVEIRTARGMGYQI 218 >gi|171056968|ref|YP_001789317.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170774413|gb|ACB32552.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 235 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 20/138 (14%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD---GRDPEVQ---- 143 D+G DD + KP E+ AR+ A+ RR + RA++ V S DP + Sbjct: 102 LDAGADDYLVKPFELDELAARIRAVMRR---HSGRAQS----VLSHRGVTLDPATRQVTR 154 Query: 144 -GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 G+ L RE +LE LM G + + Q+ +YG + E +E N V +I +LR+KL Sbjct: 155 DGQPVLLSAREIAVLEALMTRPGAMLTRAQLEDRLYG-WGEEIESNAVSVYIYQLRRKLG 213 Query: 203 NKLGFDPVDSKRFLGYSI 220 GF + + R LGYS+ Sbjct: 214 P--GF--IRTMRGLGYSL 227 >gi|190566948|ref|ZP_03019864.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|190561939|gb|EDV15908.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] Length = 235 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDVVMAKVKSALRRGYGEYA 124 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 125 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225 >gi|312879868|ref|ZP_07739668.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] gi|310783159|gb|EFQ23557.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] Length = 226 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 6/133 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR---AETG 129 P+I ++ ++ ++ + G DD + KP +E+LARV A+ RR S R + G Sbjct: 73 TPVIMLTAKDAVDDRVEGLNRGADDYLIKPFDFKELLARVNALIRRH--SEQRRPLLKCG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 P+ + R+ V PL RRE ILE LM + + +I S ++ + NV Sbjct: 131 PLTLDPVARECCVGETKVPLRRREFDILELLMRYENQVFTRDKIISHVWQKEYDGT-SNV 189 Query: 190 VESHISKLRKKLR 202 V+ H+ LR KLR Sbjct: 190 VDVHVKYLRDKLR 202 >gi|326791208|ref|YP_004309029.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541972|gb|ADZ83831.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 228 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 6/151 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 L++ +++R S +P+I ++ + + G DD V KP + E+ AR+ AI RR Sbjct: 62 LQVCQLVREFSNIPIIMLTAKGEDMDKIMGLEYGADDYVTKPFNILELKARIKAILRRSQ 121 Query: 120 ---KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 KV N + E G +R+ + R ++ + L +E +LE + GK ++ Q+ Sbjct: 122 HAEKVPNKKTIEVGELRLEVNSRRVFIKNQEMNLTAKEFDMLELFATHPGKVYSRDQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 I+G + + V+ H+ +LR+K+ G Sbjct: 182 TIWGR-EYPGDVRTVDVHVRRLREKIEPNPG 211 >gi|269977562|ref|ZP_06184529.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1] gi|307701335|ref|ZP_07638356.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris FB024-16] gi|269934165|gb|EEZ90732.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1] gi|307613496|gb|EFN92744.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris FB024-16] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 24/167 (14%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L++ R IRA +P++ ++ + DSG DD V KP E+LARV A+ RR Sbjct: 59 LDVARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRRA 118 Query: 119 ---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 ++ + R E R F R+ ++ + F L L L+ + G V+ Sbjct: 119 GGEVTEDEIIECQDVRVEVAAHRAFQGERELQLTAKEFDL-------LRVLIRDAGSVVS 171 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + Q+ ++G D + ++ H+S LR+KL D +S R++ Sbjct: 172 REQVMREVWG-SDPSGSTKTLDMHVSWLRRKL-----GDDANSPRYI 212 >gi|229163396|ref|ZP_04291347.1| Two-component response regulator [Bacillus cereus R309803] gi|228619965|gb|EEK76840.1| Two-component response regulator [Bacillus cereus R309803] Length = 240 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR+ S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 70 RQIRSVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 129 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 130 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 187 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 188 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIQNAIVTKRGYGYAL 230 >gi|210614871|ref|ZP_03290370.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787] gi|210150513|gb|EEA81522.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787] Length = 224 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 6/164 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV 121 L ++ + P++ ++ S++ + D+G +D + KP E+LARV + R+ V Sbjct: 63 LRKMRNKNENTPVLLLTAKDSVEDRVKGLDAGANDYLVKPFAFEELLARVRVLVRKTAAV 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 E G + V D G+ L +E +L Y++ N G +++ ++ ++ + Sbjct: 123 QKTCYEVGGLEVHVDTHQVLRNGKEIALSSKEFALLRYMVQNEGIVLSREKLEQHLWN-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223 D NVV+ +I LRKK+ GF+P + + R GY + N Sbjct: 182 DYMGSSNVVDVYIRYLRKKIDE--GFEPKLIHTVRGAGYVLRVN 223 >gi|153954764|ref|YP_001395529.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347622|gb|EDK34158.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 228 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/166 (23%), Positives = 80/166 (48%), Gaps = 5/166 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +E+ R +R S++P+I ++ + + D G +D + KP E+LAR+ +++ Sbjct: 63 MEVLRRLRQISEIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKS 122 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 NN G +++ + L ++E +L+YLM N+ +++ I Sbjct: 123 NNNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G +D + N+V+ +I LR K+ +K + + R LGY + Sbjct: 183 VWG-YDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQFRY 227 >gi|159185227|ref|NP_355418.2| two component response regulator [Agrobacterium tumefaciens str. C58] gi|159140490|gb|AAK88203.2| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 226 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 4/132 (3%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D G DD + KP E ARV + RR + ++ G + R G + Sbjct: 91 LDLGADDYMIKPFDITEFEARVRVLLRRNAGLRSSALSFGKVLFDLTSRTFSADGRPLDI 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 P RE +LE L GK VAK I ++ G FD+ + N +E ++S+LRK+L G Sbjct: 151 PAREVALLEVLFMRAGKVVAKEAIVQSLTG-FDDDISANAIEQYVSRLRKRLAPH-GL-T 207 Query: 210 VDSKRFLGYSID 221 V + R +GY ++ Sbjct: 208 VKTARGIGYYLE 219 >gi|29653715|ref|NP_819407.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella burnetii RSA 493] gi|153207221|ref|ZP_01945985.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella burnetii 'MSU Goat Q177'] gi|154705969|ref|YP_001425049.1| phosphate regulon transcriptional regulatory protein [Coxiella burnetii Dugway 5J108-111] gi|161830581|ref|YP_001596307.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella burnetii RSA 331] gi|165918696|ref|ZP_02218782.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella burnetii RSA 334] gi|212213134|ref|YP_002304070.1| PhoB [Coxiella burnetii CbuG_Q212] gi|212218191|ref|YP_002304978.1| phosphate regulon transcriptional regulatory protein [Coxiella burnetii CbuK_Q154] gi|29540978|gb|AAO89921.1| phosphate regulon transcriptional regulatory protein [Coxiella burnetii RSA 493] gi|120576709|gb|EAX33333.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella burnetii 'MSU Goat Q177'] gi|154355255|gb|ABS76717.1| phosphate regulon transcriptional regulatory protein [Coxiella burnetii Dugway 5J108-111] gi|161762448|gb|ABX78090.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella burnetii RSA 331] gi|165917631|gb|EDR36235.1| phosphate regulon transcriptional regulatory protein PhoB [Coxiella burnetii RSA 334] gi|212011544|gb|ACJ18925.1| PhoB [Coxiella burnetii CbuG_Q212] gi|212012453|gb|ACJ19833.1| phosphate regulon transcriptional regulatory protein [Coxiella burnetii CbuK_Q154] Length = 248 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 85/179 (47%), Gaps = 4/179 (2%) Query: 45 DVSAIEAFLIGK-GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 D+ ++ L GK G + +E + +P++ ++ + + SG DD + KP Sbjct: 63 DLILLDWMLPGKSGIEFIEWIKQKEIWQDIPIVLLTAKAEEENKVRGLMSGADDYITKPF 122 Query: 104 HHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161 E++AR+ AI RR L SN + G I++ + V+ E L E ++L + M Sbjct: 123 SPDELIARIRAILRRGPLISSNQEIKIGDIKINTAKHLVTVKDEHIALSPTEYKMLHFFM 182 Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + K ++ Q+ + I+G + +++ V+ + +LR KL+ + + R GY + Sbjct: 183 KHPNKTYSRDQLITYIWG-GNIYIDDRTVDVQVRRLRDKLKKYDHHHLIKTIRGAGYQL 240 >gi|21225507|ref|NP_631286.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256783473|ref|ZP_05521904.1| two-component system response regulator [Streptomyces lividans TK24] gi|289767351|ref|ZP_06526729.1| two-component system response regulator [Streptomyces lividans TK24] gi|8546941|emb|CAB94653.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289697550|gb|EFD64979.1| two-component system response regulator [Streptomyces lividans TK24] Length = 229 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 19/229 (8%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++ DDRA V+DG G + + E S R D ++ L G Sbjct: 4 VLIIEDDRA-VRDGVRLALRRQGHEVAAAATGEDGLEQLRSFRPDAVVLDLML--PGMSG 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IRAH QVP+I + + ++G DD V KP+ R + AR+ A+ RR+ Sbjct: 61 LEVCRRIRAHDQVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARILDARIRAVLRRVG 120 Query: 121 VSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + T G + + G QG L E R+L L A+ G+ ++ Q+ Sbjct: 121 GTADDQGTPRTEHHGDLVIDRAGLTVTHQGRPVALGPSELRLLLTLSASAGQVFSRQQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 A++ + + +V++ + K+LR+K+G P V + R GY Sbjct: 181 EAVW-EHNYHGDARLVDACV----KRLRSKIGESPGSPRYVHTVRGFGY 224 >gi|30264508|ref|NP_846885.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47529970|ref|YP_021319.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49187332|ref|YP_030584.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49481533|ref|YP_038490.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65321809|ref|ZP_00394768.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118479595|ref|YP_896746.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|165871961|ref|ZP_02216602.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167640712|ref|ZP_02398972.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688676|ref|ZP_02879881.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170709121|ref|ZP_02899548.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177653965|ref|ZP_02936006.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|196034304|ref|ZP_03101713.1| DNA-binding response regulator [Bacillus cereus W] gi|196039317|ref|ZP_03106623.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196044880|ref|ZP_03112114.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218905634|ref|YP_002453468.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225866421|ref|YP_002751799.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227817220|ref|YP_002817229.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228917078|ref|ZP_04080636.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929485|ref|ZP_04092505.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935759|ref|ZP_04098571.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948154|ref|ZP_04110438.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093513|ref|ZP_04224615.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|229123980|ref|ZP_04253172.1| Two-component response regulator [Bacillus cereus 95/8201] gi|229186681|ref|ZP_04313840.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|229604230|ref|YP_002868724.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684197|ref|ZP_05148057.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724632|ref|ZP_05186415.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736544|ref|ZP_05194250.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254751319|ref|ZP_05203356.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254757651|ref|ZP_05209678.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|301055947|ref|YP_003794158.1| two-component response regulator [Bacillus anthracis CI] gi|30259166|gb|AAP28371.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47505118|gb|AAT33794.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49181259|gb|AAT56635.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49333089|gb|AAT63735.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118418820|gb|ABK87239.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|164712251|gb|EDR17787.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511284|gb|EDR86670.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170125973|gb|EDS94873.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667362|gb|EDT18120.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172081020|gb|EDT66098.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|195992846|gb|EDX56805.1| DNA-binding response regulator [Bacillus cereus W] gi|196024368|gb|EDX63041.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196029944|gb|EDX68545.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218538158|gb|ACK90556.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225786077|gb|ACO26294.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227003846|gb|ACP13589.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228596784|gb|EEK54445.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228659282|gb|EEL14930.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228689843|gb|EEL43648.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228811512|gb|EEM57849.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823816|gb|EEM69636.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830165|gb|EEM75782.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842496|gb|EEM87586.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268638|gb|ACQ50275.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|300378116|gb|ADK07020.1| two-component response regulator [Bacillus cereus biovar anthracis str. CI] Length = 235 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDVVMAKVKSALRRGYGEYA 124 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 125 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225 >gi|325926597|ref|ZP_08187911.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325542949|gb|EGD14398.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] Length = 233 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 P++ ++ ++ + D G DD + KP RE AR + RR + ++ + G Sbjct: 73 TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNRGQASEVVQIGGF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + G LP RE R+ E L+ G+ V K +I + ++G FD+ N +E Sbjct: 133 VFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNGLFG-FDDDAGPNAIE 191 Query: 192 SHISKLRKKL 201 ++ +LR+KL Sbjct: 192 LYVGRLRRKL 201 >gi|310644747|ref|YP_003949506.1| sensory transduction protein bcer [Paenibacillus polymyxa SC2] gi|309249698|gb|ADO59265.1| Sensory transduction protein BceR [Paenibacillus polymyxa SC2] Length = 231 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 23/162 (14%) Query: 65 RIIRAHSQVPLIGIS--DYPS-LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R+IR+HS VP+I +S D+P+ + ++ G DD + KP H ++A++ A RR V Sbjct: 65 RMIRSHSNVPIIFLSSRDHPTDMVMSMQL---GADDFIQKPFHFDVLIAKIQATLRR--V 119 Query: 122 SNNRAETGPIRVFS----DGRDPEVQGEV--FPLPRRERRILEYLMANRGKRVAKTQIFS 175 N E ++ + D V E L + E IL+ L+ + K VA+ ++ Sbjct: 120 YNYNTEPVSLKTWRGATVDYEKNVVANEAGSIELTKNEIFILKLLIEQKNKIVAREELIK 179 Query: 176 AIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 +++ DE V +N + ++++LRKKL D +D RF+ Sbjct: 180 SLWD--DERFVSDNTLTVNLNRLRKKL------DELDLGRFI 213 >gi|289551851|ref|YP_003472755.1| Two-component response regulator SA14-24 [Staphylococcus lugdunensis HKU09-01] gi|289181382|gb|ADC88627.1| Two-component response regulator SA14-24 [Staphylococcus lugdunensis HKU09-01] Length = 233 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 32/219 (14%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 D Y A G+D V L +EE D+ ++ L G+ +E+ R +R + Sbjct: 28 DVYCAYDGNDAVDLI------YEE------EPDIVLLDIMLPGRDG--MEVCREVRKKFE 73 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNN 124 +P+I ++ S + + G DD V KP RE++ARV A RR + ++N Sbjct: 74 MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQPAQEVNNASN 133 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 I ++ D + +GE L RE + YL + G+ + + + ++G +D Sbjct: 134 EITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWG-YDYF 192 Query: 185 VEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 + V+ I +LR+K+ + DP + ++R +GY Sbjct: 193 GDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 227 >gi|288554258|ref|YP_003426193.1| winged helix family two component transcriptional regulator [Bacillus pseudofirmus OF4] gi|288545418|gb|ADC49301.1| two component transcriptional regulator, winged helix family [Bacillus pseudofirmus OF4] Length = 229 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/198 (28%), Positives = 88/198 (44%), Gaps = 19/198 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+GY+ D+ ++ G +LE E+ L S DV E E+ R IR Sbjct: 23 LRKEGYVV---DEAIT--GIEALEKVEKTLYSVVLLDVMMPEM-------DGFEVCREIR 70 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRA 126 SQVP+I ++ + G DD + KP E+LARV A+ RR VS +R Sbjct: 71 KVSQVPVIMLTARTQTLDKVKGLKIGADDYLTKPFEQEELLARVEAVLRRYGVSEPESRG 130 Query: 127 ETGPIRVFSDGRDP---EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 T + R+ E L +E ILE + N+ + ++ I ++G +D Sbjct: 131 NTLFFKGLVMKRNAYQVYYNEEELSLTPKEFAILELFLLNKNRVFSRDDILELVWG-YDF 189 Query: 184 AVEENVVESHISKLRKKL 201 + V++H+ LR KL Sbjct: 190 IGDYRGVDTHVKHLRDKL 207 >gi|258621919|ref|ZP_05716949.1| DNA-binding response regulator [Vibrio mimicus VM573] gi|262171352|ref|ZP_06039030.1| two-component system response regulator QseB [Vibrio mimicus MB-451] gi|258585857|gb|EEW10576.1| DNA-binding response regulator [Vibrio mimicus VM573] gi|261892428|gb|EEY38414.1| two-component system response regulator QseB [Vibrio mimicus MB-451] Length = 219 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 22/216 (10%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL + G++ DG+ + EEW DV ++ L K + + L I Sbjct: 19 ALDQTGWVPELSQDGI--DALYRATAEEW-------DVIVLDLGL-PKLDGLTVLKGIRD 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 + P++ +S +L ++ ++G DD + KP E++AR+ A RR S N + Sbjct: 69 ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPV 126 Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 + S D R +V +G+ L E +++ Y + N K +++T++ IY FD Sbjct: 127 MQVGDLSLDTRTSKVMWRGQAISLTALEYKVIAYFVHNPEKVISRTELVEHIYKQDFDR- 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E I ++RK K+ D + + R LGY + Sbjct: 186 -DSNTIEVFIGRIRK----KIAPDVIKTVRGLGYQL 216 >gi|239930847|ref|ZP_04687800.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291439218|ref|ZP_06578608.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291342113|gb|EFE69069.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA VPL+ ++ T+ D+G DD V KP E+LARV A+ RR Sbjct: 61 LEVARRLRAEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRG 120 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V +A T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 121 AVEPQQAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 + ++ HIS LRKKL Sbjct: 181 DTTWWS-STKTLDMHISWLRKKL 202 >gi|229828736|ref|ZP_04454805.1| hypothetical protein GCWU000342_00802 [Shuttleworthia satelles DSM 14600] gi|229793330|gb|EEP29444.1| hypothetical protein GCWU000342_00802 [Shuttleworthia satelles DSM 14600] Length = 230 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 9/147 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P++ +S + + G DD ++KP RE+LAR+ A RR + Sbjct: 61 EVCRAIRDQILCPILFLSAKQAESDKIHALTLGGDDFISKPFGLRELLARIEANLRREQR 120 Query: 122 SN-NRAETGPIRV-FSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQI 173 S N + R+ F+D ++ V PL RRE I+E L G+ ++ I Sbjct: 121 SQENHHQKKRTRLYFADLSLDLLEHRVRIGDTEIPLSRREYEIVELLALRAGQVFSREHI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK 200 + ++G E VVE HI K+RKK Sbjct: 181 YERVWGCDAEGDAYTVVE-HIRKIRKK 206 >gi|228927617|ref|ZP_04090669.1| Sensor histidine kinase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832097|gb|EEM77682.1| Sensor histidine kinase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 242 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 78/170 (45%), Gaps = 10/170 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + +R ++ VP++ +S + +G DD + KP + E++ARV A+ RR Sbjct: 73 LEVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSS 132 Query: 121 VSN---NRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N + E G IR+ S +V GE L E IL L +N G+ + + Sbjct: 133 FQNATSQKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEE 192 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 IF ++ D V HIS LR KL + G + + +GY I+ Sbjct: 193 IFERVWN-EDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIE 241 >gi|223983041|ref|ZP_03633245.1| hypothetical protein HOLDEFILI_00525 [Holdemania filiformis DSM 12042] gi|223964991|gb|EEF69299.1| hypothetical protein HOLDEFILI_00525 [Holdemania filiformis DSM 12042] Length = 222 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 20/169 (11%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + R +R S +P++ ++ S L G DD + KP + + +LA + A+ +R Sbjct: 63 ICRSLRQQSSIPILMVTSRSSDLDELMSMSLGADDFITKPYNVQILLAHIQAVLKRAYPQ 122 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 L+V+ + V + + E L + E RIL LM +G V++ +I Sbjct: 123 DQGRLLEVNGVTLDLSKGCVMHENQSVE-------LTKNEIRILWLLMRKQGTIVSRDEI 175 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 + ++ +E V++N + +I++LR+KL + +G P + +KR LGY I Sbjct: 176 MTDLWQ-SEEFVDDNTLTVNINRLRRKLES-IGVSPDYLSTKRGLGYRI 222 >gi|42782326|ref|NP_979573.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|217960663|ref|YP_002339227.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222096718|ref|YP_002530775.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228986323|ref|ZP_04146460.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229139866|ref|ZP_04268431.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|229197364|ref|ZP_04324091.1| DNA-binding response regulator [Bacillus cereus m1293] gi|42738251|gb|AAS42181.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|217065124|gb|ACJ79374.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221240776|gb|ACM13486.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228585988|gb|EEK44079.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228643531|gb|EEK99797.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|228773350|gb|EEM21779.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 69 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|163940906|ref|YP_001645790.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863103|gb|ABY44162.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 223 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 77/157 (49%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ + Sbjct: 67 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 126 Query: 127 ET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 T G I + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 127 ITLHGTI-IDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFE 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 185 GDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221 >gi|16799392|ref|NP_469660.1| hypothetical protein lin0315 [Listeria innocua Clip11262] gi|46906528|ref|YP_012917.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47091424|ref|ZP_00229221.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|116871681|ref|YP_848462.1| DNA-binding two-component response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|226222923|ref|YP_002757030.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254825660|ref|ZP_05230661.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|254853439|ref|ZP_05242787.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|254932515|ref|ZP_05265874.1| DNA-binding two-component system response regulator [Listeria monocytogenes HPB2262] gi|254992491|ref|ZP_05274681.1| hypothetical protein LmonocytoFSL_05021 [Listeria monocytogenes FSL J2-064] gi|255022387|ref|ZP_05294373.1| hypothetical protein LmonocyFSL_00585 [Listeria monocytogenes FSL J1-208] gi|300764580|ref|ZP_07074572.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|16412744|emb|CAC95548.1| lin0315 [Listeria innocua Clip11262] gi|46879793|gb|AAT03094.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47020101|gb|EAL10837.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|116740559|emb|CAK19679.1| DNA-binding two-component response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|225875385|emb|CAS04082.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606809|gb|EEW19417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|293584070|gb|EFF96102.1| DNA-binding two-component system response regulator [Listeria monocytogenes HPB2262] gi|293594905|gb|EFG02666.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|300514687|gb|EFK41742.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|328467897|gb|EGF38937.1| hypothetical protein LM1816_09180 [Listeria monocytogenes 1816] gi|328476127|gb|EGF46836.1| hypothetical protein LM220_01767 [Listeria monocytogenes 220] gi|332310705|gb|EGJ23800.1| Transcriptional regulatory protein walR [Listeria monocytogenes str. Scott A] Length = 237 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 88/189 (46%), Gaps = 16/189 (8%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 + +G +LE E +Q D+ ++ L G+ +E+ R +R +P+I ++ S Sbjct: 32 CAYDGDEALELVEEVQP----DLILLDIMLPGRDG--IEVCREVRKKYDMPIIMVTAKDS 85 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVSNNRAETGPIRVF 134 + + G DD V KP +RE++ARV A RR + N+ E G + + Sbjct: 86 EIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQVSSNAAEEEENSELEIGSLIIH 145 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 D +GE L RE +L YL + G+ + + + ++G +D + V+ + Sbjct: 146 PDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREHLLQTVWG-YDYFGDVRTVDVTV 204 Query: 195 SKLRKKLRN 203 +LR+K+ + Sbjct: 205 RRLREKIED 213 >gi|331003431|ref|ZP_08326930.1| hypothetical protein HMPREF0491_01792 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412477|gb|EGG91866.1| hypothetical protein HMPREF0491_01792 [Lachnospiraceae oral taxon 107 str. F0167] Length = 231 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/212 (26%), Positives = 98/212 (46%), Gaps = 19/212 (8%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V DDR +V I L G+ E + + EE ++ A+ + ++ +I V Sbjct: 4 ILVCDDDREIVDAIKIYLSGE---GFEVLTAYDGEEAIKLMAK---NRVDLLIIDIMMPV 57 Query: 61 LELPRI---IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 L+ R IR +S VP+I +S + + G DD + KP + E++ARV + R Sbjct: 58 LDGIRATMKIRENSTVPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLR 117 Query: 118 RLKVSNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R K N + G + + + ++ + GE+ L E IL L N GK + Sbjct: 118 RYKKLGNISIPESQKVVVGDLEIDDETKEVTIAGEMIKLTPIEYNILLLLAKNAGKVFSI 177 Query: 171 TQIFSAIYGLFDEAV-EENVVESHISKLRKKL 201 +I+ I+ +EA+ +N V HI +R+K+ Sbjct: 178 DEIYEQIWN--EEAIGADNTVAVHIRHIREKI 207 >gi|331086756|ref|ZP_08335833.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409922|gb|EGG89357.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 233 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 10/151 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IRA S P+I +S + + + G DD + KP +E++ARV A+ RR + Sbjct: 65 QVCREIRAKSDTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 122 SNNR---AETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 AE G I + G+V +P +E +L +L ++ + + Q Sbjct: 125 PRQETAAAEKGKCVSYPGIEINLTNYSVVCDGKVVEMPPKELELLYFLASSPNQVFTREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + I+G ++ + V+ HI +LR+K+++ Sbjct: 185 LLDQIWG-YEYIGDTRTVDVHIKRLREKIKD 214 >gi|325848909|ref|ZP_08170419.1| putative response regulator protein GraR [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480553|gb|EGC83615.1| putative response regulator protein GraR [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 222 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 6/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S +P+I ++ ++ + G DD ++KP + + ++ A+ RR N Sbjct: 66 IREISNLPIIFLTSAADDINLINAINYGADDFISKPFSMQVLNMKIKALLRRSYDFSGKN 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 I + D +V + L + E ILE LM N K V++ I ++ D Sbjct: 126 FDLSYENISLIKDKMILKVDDKEINLSKNEFLILEILMENPQKIVSREAIMDKLWAT-DS 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +++N + +I++LRKKL++ G D + +K+ +GY I Sbjct: 185 FIDDNTLTVNINRLRKKLKD-FGLDDFIQTKKGVGYFI 221 >gi|307293762|ref|ZP_07573606.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] gi|306879913|gb|EFN11130.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] Length = 239 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/216 (24%), Positives = 94/216 (43%), Gaps = 26/216 (12%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGE 58 +L+DD +++ G +G F E ++ R + +AI+ ++ GE Sbjct: 7 LLLVDDERSIREPLAQYLGRNG-----FRVTAVENAAEARMRLNANAIDLVILDIMMPGE 61 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L L R IR S++P+I ++ + + G DD V KP RE++AR+ I+RR Sbjct: 62 DGLSLCRHIRETSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRR 121 Query: 119 LKVSNNR--AETGPIRVFSDG--RDPE-----VQGEVFPLPRRERRILEYLMANRGKRVA 169 + R A G F++ + E +G PL E ++ + ++ Sbjct: 122 VATGGQRVTAPDGATYAFANWLLKTQERTLVDSEGVALPLSTAEYNLMLAFATRPNQVLS 181 Query: 170 KTQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201 + Q+ G FD A +++ IS+LRKK+ Sbjct: 182 RDQLLDITQGREANAFDRA-----IDNQISRLRKKI 212 >gi|224038940|gb|ACN38369.1| putative two-component system response regulator [Micromonospora inyonensis] Length = 231 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 13/148 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R++RA S VP+I + + D+G DD V KP ++ ARV A+ RR Sbjct: 62 ELLRMLRAVSPVPVIVATARDDETEIVRVLDAGADDYVVKPFTAAQLDARVRAVLRRGGS 121 Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK----TQI 173 + + G +RV R + GE L RE +L +L A G+ V K T++ Sbjct: 122 AAGADDPALVVGGLRVDPRARQVTLDGEPVELTPREFDLLHHLAARPGEVVTKRELMTEV 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 + YG D+ V+ H+S LR+KL Sbjct: 182 WQIPYGGADK-----TVDVHLSWLRRKL 204 >gi|290958895|ref|YP_003490077.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260648421|emb|CBG71532.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 251 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 9/165 (5%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 E+ R +R VP++ ++ + + D G DD V KP +E+ ARV A+ RR Sbjct: 87 EVCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSG 146 Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 NR G I++ +D L E +L YLM N G+ +++ QI Sbjct: 147 GGRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQE 206 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ DE VV+++I LR+KL + G + + R +GY + Sbjct: 207 RVWNHRDEG--SGVVDTYIYYLRRKL-GEPGQSLIRTVRGVGYQL 248 >gi|224437571|ref|ZP_03658529.1| hypothetical protein HcinC1_06380 [Helicobacter cinaedi CCUG 18818] Length = 226 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 13/152 (8%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 + P++ +S S++ L F G DD V+KP + +L R+ A R S E I Sbjct: 72 RTPVVIMSSKSSVENELHAFKEGADDFVSKPFNAEVLLVRIQARLRFWGSSVIEIEDLVI 131 Query: 132 -----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 ++ G++ EV+G+ F +L +L +R + V+K Q+ AI+ E V Sbjct: 132 NPDEEKITYKGQEIEVKGKPF-------EVLTHLARHRDQIVSKEQLLDAIWE-EPELVT 183 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 NV+E I+++R+K+ L +++ R GY Sbjct: 184 PNVIEVAINQIRQKMDKPLNIGTIETVRRRGY 215 >gi|170761512|ref|YP_001787695.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169408501|gb|ACA56912.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 226 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 5/164 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R S +P+I ++ ++ + D+G DD + KP E+LAR+ ++ Sbjct: 61 LEVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120 Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V+ + E G + + L RE +L+ LM N+ + ++ + Sbjct: 121 VTVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G +D E NV++ +I LR K+ + + + R +GY I Sbjct: 181 VCG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223 >gi|169794777|ref|YP_001712570.1| OmpR family transcriptional regulator [Acinetobacter baumannii AYE] gi|213157895|ref|YP_002320693.1| two component signal transduction system response regulator [Acinetobacter baumannii AB0057] gi|215482321|ref|YP_002324503.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii AB307-0294] gi|301345681|ref|ZP_07226422.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii AB056] gi|301511858|ref|ZP_07237095.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii AB058] gi|301594996|ref|ZP_07240004.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii AB059] gi|332852228|ref|ZP_08434033.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332870450|ref|ZP_08439214.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] gi|169147704|emb|CAM85567.1| transcriptional regulator protein (OmpR family),response regulator in two-component regulatory system with BaeS, regulates RNA synthesis [Acinetobacter baumannii AYE] gi|213057055|gb|ACJ41957.1| two component signal transduction system response regulator [Acinetobacter baumannii AB0057] gi|213985926|gb|ACJ56225.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii AB307-0294] gi|332729358|gb|EGJ60698.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332732187|gb|EGJ63455.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] Length = 228 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 3/142 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +R S +P+I ++ + + G DD V KP +E++ARV A+ RRL+ Sbjct: 61 LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLE 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 121 RKAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHINPD 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 FD V + V++SHI LR+K+ Sbjct: 181 SFD--VADRVIDSHIKNLRRKI 200 >gi|168183942|ref|ZP_02618606.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237795825|ref|YP_002863377.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182673003|gb|EDT84964.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263627|gb|ACQ54660.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 226 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 5/164 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R S +P+I ++ ++ + D+G DD + KP E+LAR+ ++ Sbjct: 61 LEVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120 Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V+ + E G + + L RE +L+ LM N+ + ++ + Sbjct: 121 VTVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G +D E NV++ +I LR K+ + + + R +GY I Sbjct: 181 VCG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223 >gi|170724335|ref|YP_001752023.1| two component heavy metal response transcriptional regulator [Pseudomonas putida W619] gi|169762338|gb|ACA75654.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 6/164 (3%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IRA + VP++ ++ + + + G DD + KP E+LARV + RR Sbjct: 61 EVLRKIRAAGKDVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 120 Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + V R G+ L +E +LE LM RG+ + K+ I S ++ Sbjct: 121 GGSAQTTMKMADLEVDLLKRRATRNGKRIDLTAKEFALLELLMRRRGEVLPKSLIASQVW 180 Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + FD + NV+E I +LR K+ + + + R +GY +D Sbjct: 181 DMNFDS--DTNVIEVAIRRLRAKIDDDFAPKLIHTARGMGYMMD 222 >gi|24376110|ref|NP_720153.1| DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24351142|gb|AAN57597.1|AE015895_6 DNA-binding response regulator [Shewanella oneidensis MR-1] Length = 222 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 11/136 (8%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 P++ ++ SLQ +D F SG DD +NKP E+ R+ +++ R R + G Sbjct: 72 CNTPILFLTARDSLQDKIDSFTSGGDDFLNKPFAMEELCLRLRSLHNR----GPRLDVGI 127 Query: 131 IRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 +R + Q G+ L + +R IL L+ + V+K Q+ A++G D+A Sbjct: 128 LRFGEISLNVATQQACRAGKEIKLSKIQRTILTLLLKHAPAIVSKEQVIDAVWG--DDAP 185 Query: 186 EENVVESHISKLRKKL 201 + + SHI LR L Sbjct: 186 CSDALRSHIYGLRSAL 201 >gi|73748029|ref|YP_307268.1| DNA-binding response regulato [Dehalococcoides sp. CBDB1] gi|73659745|emb|CAI82352.1| DNA-binding response regulato [Dehalococcoides sp. CBDB1] Length = 227 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%) Query: 67 IRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 IRA S+VP++ ++ + +SG D+ + KP H E+L+RV + RR + + Sbjct: 68 IRAFSSEVPVLILTVTNDEHCIVRALESGADEYIIKPFHQLELLSRVKVLLRRRLMDSEE 127 Query: 126 A--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 GP R+ V L E+ I+ +L++N G V T + AI+G + Sbjct: 128 VAINVGPFRLSKYSNTLMVDNRRLILTNTEKIIMSHLLSNAGNLVPATLLAEAIWG-HNY 186 Query: 184 AVEENVVESHISKLRKKL 201 ++ V HI +LR+K+ Sbjct: 187 TNAKDAVRVHIWRLRRKV 204 >gi|87301814|ref|ZP_01084648.1| two-component response regulator [Synechococcus sp. WH 5701] gi|87283382|gb|EAQ75337.1| two-component response regulator [Synechococcus sp. WH 5701] Length = 248 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 94/195 (48%), Gaps = 23/195 (11%) Query: 41 SAREDVSAIEAFLIGKGEKVL---ELPRI--------IRAHSQVPLIGISDYPSLQTTLD 89 +A + V A+EAF + V+ +P++ +R S VP++ ++ + + Sbjct: 37 TASDGVEALEAFRQSSPDLVVLDVMMPKLDGYGVCQELRKESDVPIVMLTALGDVADRIT 96 Query: 90 FFDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNRA-ETGPIRVFSDGRDPEV 142 + G DD V KP +E+ AR+ + RR++ + N+ + G +R+ ++ R Sbjct: 97 GLELGADDYVVKPFSPKELEARIRCVLRRVEKDPVVGIPNSGVIQVGELRIDTNKRQVYR 156 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE-AVEENVVESHISKLRKKL 201 E L E +LE L++ G+ ++ +I ++G E V+ VV+ HIS+LR KL Sbjct: 157 GEERIRLTGMEFSLLELLVSRSGEPFSRGEILKEVWGYTPERHVDTRVVDVHISRLRSKL 216 Query: 202 RNKLGFDPVDSKRFL 216 + DP + + L Sbjct: 217 ED----DPANPELIL 227 >gi|323343098|ref|ZP_08083329.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463162|gb|EFY08357.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 231 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 68/156 (43%), Gaps = 16/156 (10%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 E+ IR H VP++ +S + Q F G DD ++KP E+ RV ++ RR Sbjct: 60 FEVSEAIRKHYNVPILFVSAKATEQDKFVGFSVGGDDYLSKPFSFSELSLRVKSLLRRYI 119 Query: 120 ---KVSNNRAETGPIRVF-SDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + N E + S D E G L RE RIL+ L NRGK + Sbjct: 120 QYDRATENALEQNKVNTIDSITIDLEKGITLKDGLPLDLTEREFRILKLLATNRGKIFSI 179 Query: 171 TQIFSAIYG---LFDEAVEENVVESHISKLRKKLRN 203 I+ ++ L+ A N V HI LRKK+ N Sbjct: 180 QSIYENVWQDEYLYSSA---NTVMVHIRNLRKKIEN 212 >gi|255767758|ref|NP_391202.2| two-component response regulator YvrH involved in cell wall processes YvrG [Bacillus subtilis subsp. subtilis str. 168] gi|321312870|ref|YP_004205157.1| two-component response regulator YvrH involved in cell wall processes (YvrG) [Bacillus subtilis BSn5] gi|251757511|sp|P94504|YVRH_BACSU RecName: Full=Transcriptional regulatory protein yvrH gi|225185386|emb|CAB15312.2| two-component response regulator YvrH involved in cell wall processes [YvrG] [Bacillus subtilis subsp. subtilis str. 168] gi|320019144|gb|ADV94130.1| two-component response regulator YvrH involved in cell wall processes (YvrG) [Bacillus subtilis BSn5] Length = 237 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 7/168 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-- 114 G E +IR +S P+ ++ S L F G DD + KP + E+ AR+ A Sbjct: 60 GMSGFEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHL 119 Query: 115 --IYRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 Y+ + S+N+ T FS + V GE + ++L+Y + ++K Sbjct: 120 KRTYQSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKD 179 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218 QI+ ++G + + N V HI KLR+K+ R+ + + + R LGY Sbjct: 180 QIYEKVWG-YPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGY 226 >gi|126652337|ref|ZP_01724513.1| two-component response regulator [Bacillus sp. B14905] gi|126590912|gb|EAZ85025.1| two-component response regulator [Bacillus sp. B14905] Length = 224 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/155 (23%), Positives = 75/155 (48%), Gaps = 3/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 RA++++PL+ ++ + F+ G DD + KP E+ RV A+ +R ++ ++ Sbjct: 69 RANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYRIGYSQTI 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + G I + + LP +E +L L G+ + Q+ I+G+ D A + Sbjct: 129 KLGAITLDRQTYKIMTGTDTITLPLKEFELLYKLAETPGQVYTREQLIDQIWGI-DYAGD 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ HI +LR++ F +++ R LGY ++ Sbjct: 188 NRTIDVHIKRLRERFAMIADFH-IETIRGLGYRLE 221 >gi|119509039|ref|ZP_01628190.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119466205|gb|EAW47091.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 226 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 97/208 (46%), Gaps = 22/208 (10%) Query: 23 GVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGIS- 79 V+ +G +L ++ARE D+ + + G LE+ R +R+ QVP+I ++ Sbjct: 29 SVAYDGLTAL-------TAARELDIDLVILDWMLPGLSGLEICRRLRSTGDQVPVILLTA 81 Query: 80 -DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR 138 D S + D+G DD V KP E+LARV A RR N A+ G I F D Sbjct: 82 KDEVSDGHRVAGLDAGADDYVVKPFSVEELLARVRAHLRR----NQDADAGDILQFEDLS 137 Query: 139 DPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 EVF L +E +LEYL+ + + + + +I ++ +D + N++E Sbjct: 138 LNRRTREVFRGQRLIDLTAKEFDLLEYLLTHPRQVITRDRILEQVWD-YDFIGDSNIIEV 196 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +I LR KL + + R +GY + Sbjct: 197 YIRYLRLKLETNNEKRLIQTVRGVGYVL 224 >gi|157963921|ref|YP_001503955.1| two component transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157848921|gb|ABV89420.1| two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 6/164 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L+L +RA SQ P++ +S + + +G DD + KP E+L R + +R Sbjct: 60 LKLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRG 119 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + GP+ + R + G+ L +E ++L+YLM + + +++T +F A+ Sbjct: 120 ESQPAVTDLNVGPLTIELLTRKVTLDGQEILLQPKEFQLLKYLMEHVNQVISRTLLFEAV 179 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + FD NV++ HI+KLR+K + +++ R GY + Sbjct: 180 WDYHFDP--RTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221 >gi|75759276|ref|ZP_00739375.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903343|ref|ZP_04067474.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228910680|ref|ZP_04074491.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|74493225|gb|EAO56342.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228848948|gb|EEM93791.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228856304|gb|EEN00833.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 242 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 13/186 (6%) Query: 27 EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+ L+ EE L+ + DV I ++ + + +R +++P+I +S Sbjct: 35 EGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGIHMCMKVREIAEMPIIMLSAKTQ 94 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN------NRAETGPIRVFSD 136 + +G DD V KP + E++AR+ + RR +K+S N E G ++V Sbjct: 95 DMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKMSGTSVQDENEIEIGDMKVNIV 154 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHIS 195 R + E L RE +LE L+ N+G + QI+ ++ ++A + +N V HI Sbjct: 155 TRQVIIANEEVKLTPREFEVLELLVRNQGMVLNAAQIYERVWK--EQAFQSDNTVMVHIR 212 Query: 196 KLRKKL 201 K+R+K+ Sbjct: 213 KIREKI 218 >gi|30263183|ref|NP_845560.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47528548|ref|YP_019897.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49186033|ref|YP_029285.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65320511|ref|ZP_00393470.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|167632499|ref|ZP_02390826.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167637046|ref|ZP_02395326.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170684879|ref|ZP_02876104.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170705287|ref|ZP_02895752.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650137|ref|ZP_02933138.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190564781|ref|ZP_03017702.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196032201|ref|ZP_03099615.1| DNA-binding response regulator [Bacillus cereus W] gi|218904374|ref|YP_002452208.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225865180|ref|YP_002750558.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227813952|ref|YP_002813961.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228915829|ref|ZP_04079405.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928291|ref|ZP_04091332.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228934497|ref|ZP_04097332.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229046908|ref|ZP_04192540.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229602195|ref|YP_002867447.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254685790|ref|ZP_05149649.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254723197|ref|ZP_05184985.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254738260|ref|ZP_05195963.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254742572|ref|ZP_05200257.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254752575|ref|ZP_05204611.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761091|ref|ZP_05213115.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|300118413|ref|ZP_07056159.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|30257817|gb|AAP27046.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47503696|gb|AAT32372.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49179960|gb|AAT55336.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|167514553|gb|EDR89919.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167532797|gb|EDR95433.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170130142|gb|EDS99004.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170671139|gb|EDT21877.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172084089|gb|EDT69148.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190564098|gb|EDV18062.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994952|gb|EDX58906.1| DNA-binding response regulator [Bacillus cereus W] gi|218537351|gb|ACK89749.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225786724|gb|ACO26941.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227006224|gb|ACP15967.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228724453|gb|EEL75778.1| DNA-binding response regulator [Bacillus cereus AH676] gi|228825134|gb|EEM70931.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228831338|gb|EEM76934.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843810|gb|EEM88883.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266603|gb|ACQ48240.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|298724198|gb|EFI64894.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 69 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|186682188|ref|YP_001865384.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464640|gb|ACC80441.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 244 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 98/201 (48%), Gaps = 17/201 (8%) Query: 36 EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSG 94 ++L++ E AI +++ G +EL + +R+ H +P++ ++ ++ + DSG Sbjct: 38 QYLETGWTEYTLAIFDWML-PGVSGVELCKWLRSRHLTLPVLMLTAKDRMEEKIIGLDSG 96 Query: 95 VDDVVNKPIHHREILARVAAIYRRL---------KVSNNRAETGPIRVFSDGRDPEVQ-- 143 DD + KP E+LAR+ A+ RR +V R + G + + + Q Sbjct: 97 ADDYLIKPFGMAELLARLRALQRRASYVGATLTPQVQPRRLQVGCLILNYSTHELTRQYS 156 Query: 144 ---GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 VF L +E ++LEY M + +++ QI + ++ + E V NVV + I LR+K Sbjct: 157 HREKRVFSLTVKEFQLLEYFMRHPNHIISRDQIINQLWEIGAEPV-SNVVAAQIRLLRRK 215 Query: 201 LRNKLGFDPVDSKRFLGYSID 221 L + +++ +GY ++ Sbjct: 216 LGEEDSESLIETIYGVGYRLN 236 >gi|332654085|ref|ZP_08419829.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16] gi|332517171|gb|EGJ46776.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16] Length = 240 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 22/223 (9%) Query: 8 RALVKDGYIALFGDDGVSLEGFN-SLEFEEWLQSSAREDVSAIEAFLIGKGEKV---LEL 63 R L I + D+ V ++G +L+ E + + + A+E GK + + L + Sbjct: 3 RELYHMAKILVVDDERVLVKGITFNLKNEGYQVETGYDGEEAVELAREGKFDLIILDLMM 62 Query: 64 PRI--------IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 P+I IR S VP+I ++ + F+ G DD + KP + E+ ARV A+ Sbjct: 63 PKIDGLQACMRIREFSNVPIIMLTARSEDTDKIIGFECGADDYITKPFNILELKARVRAL 122 Query: 116 YRRLKV-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR + + G IR+ + R G L +E ++E LM N G+ ++ Sbjct: 123 LRRSGAAVQHQAAGQLTVGHIRLDPNERSAWKDGVSVDLTAKEFDLMELLMRNPGRVYSR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 + + ++G ++ + V+ H+ ++LR KL DP + + Sbjct: 183 ENLLNVVWG-YEYIGDYRTVDVHV----RRLREKLELDPANPQ 220 >gi|296536395|ref|ZP_06898497.1| response regulator [Roseomonas cervicalis ATCC 49957] gi|296263277|gb|EFH09800.1| response regulator [Roseomonas cervicalis ATCC 49957] Length = 226 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 19/160 (11%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---------RLKV 121 + P++ +S + + +G DD + KP E+LARV A+ R RLKV Sbjct: 72 NHTPVLFLSALGGVDERVKGLKAGGDDYLVKPFAFAELLARVEALGRRPAVDAPATRLKV 131 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 ++ + V GR ++Q RE R+LE+LM + G+ V +T + ++ Sbjct: 132 ADLELDLLSRTVTRAGRKIDIQ-------PREFRLLEHLMRHAGQVVTRTMLLEKVWDYH 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + NV++ H+S+LR+KL + + R GY I Sbjct: 185 FDP--QTNVIDVHVSRLRQKLDKGQDKPLIHTVRNAGYMI 222 >gi|228946856|ref|ZP_04109158.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812843|gb|EEM59162.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 69 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|228915183|ref|ZP_04078778.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229159088|ref|ZP_04287139.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228624355|gb|EEK81131.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228844414|gb|EEM89470.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|324326567|gb|ADY21827.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 235 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/167 (23%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P++ IS + ++G DD ++KP H+ ++A++ + RR Sbjct: 65 RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 KV E + ++ + +++ + + R E +LE LM N + V++ + + ++ Sbjct: 125 PKVEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEAILLEMLMKNYPRVVSREVLLNKLW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223 + V++N + + +++RKKL+ D +++ R +GY I W+ Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLHIEDAIETIRSVGYRLHITWD 230 >gi|227328253|ref|ZP_03832277.1| two-component system response regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 226 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 19/208 (9%) Query: 27 EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF++ L +E + + D +A+ ++ +++ R IR Q+P+I ++ Sbjct: 23 EGFSTSRVLTGKEGVDGATSGDYTAMILDVMLPDMSGIDVLRQIRKTQQLPVIMLTARGD 82 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETGPIRVFSDG 137 + + G DD + KP + RE++AR+ A+ RR K + A +G + + Sbjct: 83 NIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYDDQPSTKRDESLAASGDLVLNPAT 142 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 R E +G+ F L E +LE L+ + + V+K ++ G EA + + V+ HIS + Sbjct: 143 RISEWRGKPFDLTASEFNLLELLLRSPERVVSKDELSEKCLGRRREAYDRS-VDVHISNI 201 Query: 198 RKKLRNKLGFDP-----VDSKRFLGYSI 220 R+ KLG P +++ R +GY I Sbjct: 202 RQ----KLGVLPGNTMTIETVRSVGYRI 225 >gi|206973923|ref|ZP_03234841.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206748079|gb|EDZ59468.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 235 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/167 (23%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P++ IS + ++G DD ++KP H+ ++A++ + RR Sbjct: 65 RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 KV E + ++ + +++ + + R E +LE LM N + V++ + + ++ Sbjct: 125 PKVEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEAILLEMLMKNYPRVVSREVLLNKLW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223 + V++N + + +++RKKL+ D +++ R +GY I W+ Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLQIEDAIETIRSVGYRLHITWD 230 >gi|126698058|ref|YP_001086955.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile 630] gi|254974096|ref|ZP_05270568.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile QCD-66c26] gi|255091495|ref|ZP_05320973.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile CIP 107932] gi|255099603|ref|ZP_05328580.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile QCD-63q42] gi|255313223|ref|ZP_05354806.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile QCD-76w55] gi|255515913|ref|ZP_05383589.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile QCD-97b34] gi|255649007|ref|ZP_05395909.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile QCD-37x79] gi|306519126|ref|ZP_07405473.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile QCD-32g58] gi|115249495|emb|CAJ67310.1| Two-component response regulator [Clostridium difficile] Length = 230 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 9/149 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR P+I +S S + G DD V KP RE++AR+ A RR K Sbjct: 60 FEVCQAIRDDVLCPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREK 119 Query: 121 VSN-----NRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S N+ T G + ++ R ++ G+ L + E I+E L + G+ ++ Q Sbjct: 120 RSQYINEENKRSTLYFGKLCLYMKERAIKIDGKNIDLTKIEYDIVELLALHAGQVFSREQ 179 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I+ ++G E VVE + K+R K Sbjct: 180 IYEKVWGCDSEGDSSTVVE-RVKKIRAKF 207 >gi|116696030|ref|YP_841606.1| response regulator [Ralstonia eutropha H16] gi|113530529|emb|CAJ96876.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 240 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 75/149 (50%), Gaps = 10/149 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+L R+ RA SQ P+I + + + + G DD ++KP RE+ AR+ A+ RR Sbjct: 69 LDLLRLHRARSQRPVIMFTAHGDEADRVLGLELGADDYLSKPFSPRELKARMHAVLRRFH 128 Query: 121 VSNNRA-------ETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + A E G +R+ + G E PL E+R+LE LM G+ VA+ + Sbjct: 129 RAAPAAPAQAPWLEAGALRLNLASGLAIHGNAEA-PLTGAEQRVLEILMRAPGRVVARAE 187 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I G E + + +++HIS LR+KL Sbjct: 188 IGRFALGRAPERYDRS-LDTHISALRRKL 215 >gi|325663027|ref|ZP_08151477.1| hypothetical protein HMPREF0490_02217 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470481|gb|EGC73711.1| hypothetical protein HMPREF0490_02217 [Lachnospiraceae bacterium 4_1_37FAA] Length = 235 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 1/153 (0%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I ++ + F G DD + KP + ARV + R+ Sbjct: 79 IRRESEVPVIMLTANDLEIDQVTGFSLGADDYITKPFSLMILRARVERMLARMAQDKGLT 138 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E R + V+G+ L + E+++L L+ ++G+ + + Q+ I+ + V Sbjct: 139 YEKDGYRFVFEQMYFTVEGKEVTLSKTEQKLLRILIEHQGQTLTREQLVDRIWSDGAQYV 198 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 EEN + + +LRKKL +P+ + LGY Sbjct: 199 EENALSVTVGRLRKKLEQTGKKNPIQTVYGLGY 231 >gi|319442462|ref|ZP_07991618.1| two-component system response regulator [Corynebacterium variabile DSM 44702] Length = 244 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/189 (24%), Positives = 91/189 (48%), Gaps = 17/189 (8%) Query: 32 LEFEEWLQSSAREDVSAIE--------AFLIGKGEKVLE----LPRIIRAHSQVPLIGIS 79 LEF+++ +A + SA+E A+++ ++ L ++ A + P++ ++ Sbjct: 37 LEFQDFDVRTANDGASALEIAKDFQPDAYILDVMMPGMDGFTVLNKLREAGDEAPVLFLT 96 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFS 135 ++ + G DD V KP E++ R+ I RR++ E+ + + Sbjct: 97 AKDAVDDRIHGLTLGADDYVTKPFALEEVITRLRVILRRVQPEEKEDESLITYADLTLSD 156 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 D + G+V L E ++L YL+ N V+K +I A++ +D + NVVES++S Sbjct: 157 DMHEVTKGGQVVDLSPTEFKLLRYLLINAEVVVSKAKILDAVWE-YDFGGDGNVVESYVS 215 Query: 196 KLRKKLRNK 204 LR+K+ + Sbjct: 216 YLRRKIDTQ 224 >gi|229032881|ref|ZP_04188836.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228728426|gb|EEL79447.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 223 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R ++ +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKNRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ G I + R V G+ L RE + + ++N + + ++ Sbjct: 120 KAEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY ID Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKID 222 >gi|222096133|ref|YP_002530190.1| response regulator [Bacillus cereus Q1] gi|221240191|gb|ACM12901.1| response regulator [Bacillus cereus Q1] Length = 235 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/167 (23%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P++ IS + ++G DD ++KP H+ ++A++ + RR Sbjct: 65 RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 KV E + ++ + +++ + + R E +LE LM N + V++ + + ++ Sbjct: 125 PKVEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEAILLEMLMKNYPRVVSREVLLNKLW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223 + V++N + + +++RKKL+ D +++ R +GY I W+ Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLQIEDAIETIRSVGYRLHITWD 230 >gi|196231912|ref|ZP_03130768.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196224034|gb|EDY18548.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 234 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/205 (23%), Positives = 102/205 (49%), Gaps = 18/205 (8%) Query: 28 GFNSLEFEEWLQS--SAREDVSAIEAF-LIGKGEKVLELPRIIR---AHSQVPLIGISDY 81 G+N L+ E+ L + AR+ A+ L+ LE+ ++++ A +++P+I ++ Sbjct: 31 GYNVLKAEDGLSALEQARQTSPALIVLDLMLPEMSGLEVCKVLKRETATNRIPVIMLTAK 90 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET------GPIRVFS 135 + + G DD + KP RE++ RV ++ RR ++N AE G I++ Sbjct: 91 AEEVDRIVGLELGADDYMTKPFSPRELVLRVKSVLRR---ASNGAEVSDRLVLGDIQIDR 147 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 + + G+V E ++L L+ RG+ + + + ++G ++ ++ V++HI Sbjct: 148 TRHEVTIGGKVVDFTATEFKLLALLIERRGRVQDRETLLNDVWG-YETVIDTRTVDTHIR 206 Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220 +LR+KL + +++ R GY + Sbjct: 207 RLREKLGKSGSY--IETIRGFGYRV 229 >gi|170756446|ref|YP_001780968.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169121658|gb|ACA45494.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 223 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ +R+ S + P+I ++ ++ D+G DD + KP E+ AR+ AI RR Sbjct: 60 IEILNYLRSESIETPVIIVTARDEVEQLAFGLDNGADDYITKPFKLLELRARIHAIIRRF 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +N G +++ R E++ + L +E ILEY+ V+ +I IY Sbjct: 120 HGRTNPIINIGKLQLNPITRTVEIENKPVALASKEFDILEYICYRHPAVVSSEEIAEHIY 179 Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + +V+ HI++L+KKL N G + + + R GY Sbjct: 180 ---DENFDPFSSVLRVHIARLKKKLSNASGKEILINIRGKGY 218 >gi|158521332|ref|YP_001529202.1| two component transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158510158|gb|ABW67125.1| two component transcriptional regulator, winged helix family [Desulfococcus oleovorans Hxd3] Length = 234 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 11/147 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA SQVP+I ++ + + G DD ++KP + RE+LAR+ A+ RR S A Sbjct: 69 IRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRRATASAEAA 128 Query: 127 ET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 G + + GR G + E IL L++++G + + ++ Sbjct: 129 PVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTPLTRDRLLDL 188 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203 G E + + ++ HIS++RKKL + Sbjct: 189 ASGRDFETFDRS-IDVHISRIRKKLED 214 >gi|187928863|ref|YP_001899350.1| winged helix family two component heavy metal response transcriptional regulator [Ralstonia pickettii 12J] gi|187725753|gb|ACD26918.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12J] Length = 228 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 6/159 (3%) Query: 67 IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSN 123 +RA Q VP++ ++ S+ + + G DD + KP E+LARV + RR V+ Sbjct: 66 LRASEQAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRTLLRRGNSAVTA 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182 +R + + + R G+ PL +E +LE L+ RG+ + ++ I S ++ + FD Sbjct: 126 DRIQVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVWDMNFD 185 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NV++ I +LR K+ + + + R +GY ++ Sbjct: 186 S--DTNVIDVAIRRLRAKIDDHFEPKLIQTVRGMGYVLE 222 >gi|70725018|ref|YP_251932.1| response regulator VicR [Staphylococcus haemolyticus JCSC1435] gi|123776194|sp|Q4LAJ9|WALR_STAHJ RecName: Full=Transcriptional regulatory protein walR gi|68445742|dbj|BAE03326.1| response regulator, VicR [Staphylococcus haemolyticus JCSC1435] Length = 233 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 32/219 (14%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 D Y A G+D V L +EE D+ ++ L G+ +E+ R +R + Sbjct: 28 DVYCAYDGNDAVDLI------YEE------EPDIVLLDIMLPGRDG--MEVCREVRKKFE 73 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------LKVSNN 124 +P+I ++ S + + G DD V KP RE++ARV A RR + + N Sbjct: 74 MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQPAQEVSGTTN 133 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 I ++ D + +GE L RE + YL + G+ + + + ++G +D Sbjct: 134 EITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWG-YDYF 192 Query: 185 VEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 + V+ I +LR+K+ + DP + ++R +GY Sbjct: 193 GDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 227 >gi|320450181|ref|YP_004202277.1| transcriptional regulatory protein QseB [Thermus scotoductus SA-01] gi|320150350|gb|ADW21728.1| transcriptional regulatory protein QseB [Thermus scotoductus SA-01] Length = 220 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 7/164 (4%) Query: 58 EKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 E L R +R A P++ ++ +L L + G +D + KP E++AR+ A+ Sbjct: 61 EAGFHLARTLREAGFTQPILFLTAKDALDDRLHGLELG-EDYLTKPFALSELVARIRALL 119 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR +V R E G + + + R L +E ++LE L+ NRG+ +K +I Sbjct: 120 RRGEVRPRRVEVGEVVLEVEARRVLKGSLPIGLTAKEYQVLELLVLNRGRVFSKDEILER 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G E E N+VE ++ K LR KLG + +++ R LGY + Sbjct: 180 IWGPGYEG-ESNLVEVYV----KNLRKKLGEEVIETIRGLGYRV 218 >gi|298242241|ref|ZP_06966048.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297555295|gb|EFH89159.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 224 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 10/118 (8%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG-----E 145 D+G DD + KP E+ AR+ A++RR K +A+ + + DP + + Sbjct: 91 LDAGADDYLTKPFSFDELTARIRALFRRGK----KADATLLTIGDLSLDPATKTVKRGEQ 146 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 L RE +LEY + N + KTQI ++ E + N+VE+++ LRKK++ Sbjct: 147 SIVLTTREYALLEYFLRNPNILLTKTQILEHVWDYNFEGL-SNIVETYVKYLRKKIKT 203 >gi|291525698|emb|CBK91285.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291528177|emb|CBK93763.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 12/157 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQT-TLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R IR S VP++ ++ SL+T ++ +G DD + KP + E++AR+ A+ RR Sbjct: 60 IDVCRKIREKSYVPILFLT-AKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIRRC 118 Query: 120 KVSNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 +V +N E + + + + G L +E +IL L+++ K + Sbjct: 119 RVYDNADASDTTASSTIERCGLTLDTKCNNVSYDGRQLALTDKEYQILLLLISHPTKTFS 178 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 IF +++ N + HI LR KL G Sbjct: 179 TQNIFESVWNEPYTQFSNNTIMVHIKNLRNKLEAGCG 215 >gi|294634562|ref|ZP_06713097.1| putative transcriptional regulator [Edwardsiella tarda ATCC 23685] gi|291092076|gb|EFE24637.1| putative transcriptional regulator [Edwardsiella tarda ATCC 23685] Length = 285 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 23/210 (10%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEK 59 +LI+D L+ DG A G+S GF F + Q A D + +A ++ G Sbjct: 70 LLIEDDRLIGDGIKA-----GLSKMGFTLDWFSDGNQGLAALDAAPYDAVILDLSLPGID 124 Query: 60 VLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ R R H++ P++ ++ +L+ + G DD + KP E+ AR+ A+ R Sbjct: 125 GLEILRRWREAGHAE-PVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIR 183 Query: 118 R------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R ++S+ P+ + + + G L +E +LE L+ N G+ + ++ Sbjct: 184 RNHGQTQTQLSHGAVTLDPLSLTA-----TLDGAPLLLKPKEFALLELLLRNAGRVLPRS 238 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 I +Y ++ V N VE HI LR+KL Sbjct: 239 LIEEKLYN-WEGDVSSNAVEVHIHHLRRKL 267 >gi|239927334|ref|ZP_04684287.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 226 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 83/186 (44%), Gaps = 6/186 (3%) Query: 37 WLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV 95 W+ + + ++ L G G KV R R + VP++ ++ + D+G Sbjct: 38 WMARTGEYALVVLDLMLPGLNGYKVCAQLR--REGNAVPILVLTAKDGEWDQAEALDTGA 95 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRER 154 DD + KP + ++AR+ A+ RR + G + + GR G L RE Sbjct: 96 DDYLAKPFSYLVLVARLRALVRRAATAAPPVLAVGDLSLDVAGRVCRRAGVRVELTPREF 155 Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKR 214 +LE L G+ V+KT + + DEA + N+VE+ +S LRKK+ + + R Sbjct: 156 AVLELLARRAGQAVSKTDLL--YHAWPDEAQDPNLVEARVSALRKKVDAAFHRKSLQTVR 213 Query: 215 FLGYSI 220 GY + Sbjct: 214 GTGYRL 219 >gi|227364325|ref|ZP_03848418.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3] gi|227543739|ref|ZP_03973788.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A] gi|300908804|ref|ZP_07126267.1| response regulator [Lactobacillus reuteri SD2112] gi|325683524|ref|ZP_08163040.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] gi|227070638|gb|EEI08968.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3] gi|227186307|gb|EEI66378.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A] gi|300894211|gb|EFK87569.1| response regulator [Lactobacillus reuteri SD2112] gi|324977874|gb|EGC14825.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] Length = 241 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 9/151 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ + +RA +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 68 LEVAKRVRAKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQA 127 Query: 119 -LKV-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 LK +N + G + + + +GE L RE +L YL + G+ + + Sbjct: 128 TLKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREH 187 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ + +LR+K+ + Sbjct: 188 LLQTVWG-YDYFGDVRTVDVTVRRLREKIED 217 >gi|218898303|ref|YP_002446714.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228901739|ref|ZP_04065911.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|228966150|ref|ZP_04127212.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|218542653|gb|ACK95047.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228793519|gb|EEM41060.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228857871|gb|EEN02359.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 69 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|111022019|ref|YP_704991.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821549|gb|ABG96833.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 228 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 105/238 (44%), Gaps = 36/238 (15%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGE 58 +++DD A +++ A EGF+ + + + A + S+ + ++ G Sbjct: 6 VLVVDDEATIREAVAARL-----RAEGFDVVTASDGPSAVAECEASSPDVLVLDVMLPGY 60 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 LE+ R ++A VP++ ++ L G DD ++KP R ++ARV A+ RR Sbjct: 61 DGLEVCRRVQASRPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVHALLRR 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQG--EVFPLPRRERR-------------ILEYLMAN 163 ++ ET P RD G EV + RR RR +L Y + Sbjct: 121 ---ADRAQETVPAE-----RDGLSVGDIEVDLVERRVRRGVDEIHLTRTEFDLLAYFASR 172 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +A+ + + ++G D A V+SH+ K LR KLG D + + +GY++D Sbjct: 173 PRAAIARESLLAEVWGWGDGA-GSRTVDSHV----KALRRKLGGDLIRTVHGVGYALD 225 >gi|28870461|ref|NP_793080.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|302132949|ref|ZP_07258939.1| DNA-binding heavy metal response regulator, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853708|gb|AAO56775.1| DNA-binding heavy metal response regulator, putative [Pseudomonas syringae pv. tomato str. DC3000] gi|330875864|gb|EGH10013.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966287|gb|EGH66547.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. actinidiae str. M302091] gi|331017200|gb|EGH97256.1| DNA-binding heavy metal response regulator, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 227 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 6/152 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETG 129 P++ IS + + +G DD + KP E+ ARV + RR + + + Sbjct: 74 TPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNPVSAAKTVLQVA 133 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 + + R+ GE L E ++LE+LM N G+ + + IF ++G FD N Sbjct: 134 DLELNLISREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVWGYHFDPGT--N 191 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ HI +LRKK+ + + R GY I Sbjct: 192 LIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223 >gi|163941059|ref|YP_001645943.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863256|gb|ABY44315.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 224 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126 RA+ +PL+ ++ + F+ G DD + KP E+ RV A+ +R K+ S Sbjct: 69 RANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIGSTQTI 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + E LP +E +L L G+ + Q+ I+G+ D A + Sbjct: 129 HLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGI-DYAGD 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V+ HI +LR++ F +++ R LGY ++ Sbjct: 188 DRTVDVHIKRLRERFATTHDFR-IETVRGLGYRLE 221 >gi|330991619|ref|ZP_08315570.1| Phosphate regulon transcriptional regulatory protein phoB [Gluconacetobacter sp. SXCC-1] gi|329761638|gb|EGG78131.1| Phosphate regulon transcriptional regulatory protein phoB [Gluconacetobacter sp. SXCC-1] Length = 244 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 89/207 (42%), Gaps = 21/207 (10%) Query: 28 GFNSL-EFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85 G ++L E EW + D+ ++ + G G + R+ A +P+I ++ + Sbjct: 41 GLDALREVTEW-----KPDLVLLDWMMPGLSGVDLCRRLRMATATRYLPVIMLTARGEER 95 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---------GPIRVFSD 136 ++ D+G DD + KP + ARV A+ RR A I V Sbjct: 96 DSIHALDTGADDYLVKPCGMDVLHARVRAVMRRCAGRGATAAAEQNDDVLGFADITVDHG 155 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE--AVEENVVESHI 194 GR G L E RIL +L+ N + ++ +I +A + D+ VEE V+ HI Sbjct: 156 GRRVTRGGSAIALGPTEYRILLHLLRNPRRVFSRAEILAAAW---DDRIHVEERTVDVHI 212 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSID 221 +LR L G D + + R GY +D Sbjct: 213 RRLRLALNAGGGVDLIRTVRSSGYMLD 239 >gi|294628412|ref|ZP_06706972.1| DNA-binding response regulator TrcR [Streptomyces sp. e14] gi|292831745|gb|EFF90094.1| DNA-binding response regulator TrcR [Streptomyces sp. e14] Length = 249 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 99/209 (47%), Gaps = 21/209 (10%) Query: 30 NSLEFEEWLQSSAREDVSAI-EAFLIGKGEKVLE--LP---------RIIRAHSQVPLIG 77 +L ++ W +A + SA+ EA + VL+ LP R+ V ++ Sbjct: 39 GALRYQGWEVRTAEDGASAVAEARALRPDAVVLDVMLPDTDGLTVLRRLHEVRPDVCVLL 98 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-----TGPIR 132 ++ +++ + +G DD V KP E++AR+ + RR ++ A+ G + Sbjct: 99 LTARDAVEDRIAGITAGGDDYVTKPFSLEEVIARLRGLLRRAGMARQPADGPRLTVGDLV 158 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + D R+ GE+ L E +L +LM N + ++KTQI ++ +D +VVE Sbjct: 159 MDEDAREVTRAGELIELSPTEYELLRFLMRNPRRVLSKTQILDRVWS-YDFGGRAHVVEL 217 Query: 193 HISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +IS LRKK+ G +P + + R GY + Sbjct: 218 YISYLRKKV--DAGREPMIHTVRGAGYVL 244 >gi|294670535|ref|ZP_06735415.1| hypothetical protein NEIELOOT_02257 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307814|gb|EFE49057.1| hypothetical protein NEIELOOT_02257 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 102/220 (46%), Gaps = 39/220 (17%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEA-----FLIGK 56 +L++D A++ + D G +++ W+++ + VSA++A L+ Sbjct: 3 VLLVEDDAMIAEAAACGLKDSGYAVD---------WIKNGGQV-VSAVQAQPYDLILLDL 52 Query: 57 G----EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 G + + L + A VP++ ++ L + L D G DD + KP E+ AR+ Sbjct: 53 GLPGCDGLQILAELRAAGCSVPILIVTARDDLHSRLGGLDGGADDYIVKPFDMAELQARM 112 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDG---RDPEV--------QGEVFPLPRRERRILEYLM 161 A+ RR N +++ P S+G DP +G++ L +E +L+ L+ Sbjct: 113 RAVLRR---HNGQSQALP----SNGLLTLDPATRRVRVAGQEGDIM-LSNKEFAVLQALL 164 Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 G +++T + IYG + E VE N V+ I LRKKL Sbjct: 165 MRPGMILSRTDLEDKIYG-WGEEVESNAVDFLIHALRKKL 203 >gi|229821566|ref|YP_002883092.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567479|gb|ACQ81330.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 233 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 72/147 (48%), Gaps = 7/147 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ R +RA P+I ++ + + + G DD V KP RE++ R+ ++ RR Sbjct: 68 LEVTRRVRAICDAPIIMLTALGTGDDRIAGLEVGADDYVTKPFSPRELVLRIQSVLRRAL 127 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 L ++ A GP+ + R G+V PL RE +L +LM + + ++ ++ Sbjct: 128 GPLSAPSD-ATAGPLDLDGARRRVTRDGDVVPLTTREFDLLAFLMRHPDRAFSREELLEH 186 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN 203 ++G + + V H+ +LR K+ + Sbjct: 187 VWGW--TFGDLSTVTVHVRRLRAKIED 211 >gi|229522675|ref|ZP_04412091.1| DNA-binding response regulator [Vibrio cholerae TM 11079-80] gi|229528012|ref|ZP_04417403.1| DNA-binding response regulator [Vibrio cholerae 12129(1)] gi|229334374|gb|EEN99859.1| DNA-binding response regulator [Vibrio cholerae 12129(1)] gi|229340660|gb|EEO05666.1| DNA-binding response regulator [Vibrio cholerae TM 11079-80] Length = 247 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I RA +P++ ++ + + D G D+ + KP E+LAR+ I RR S Sbjct: 92 LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 148 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE G + + ++ + L R E +IL LM G+ ++K + A++ Sbjct: 149 SGSAEELISVGDLDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 208 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +DE +N +E HI LRKKL + L V + R +GY I+ Sbjct: 209 G-WDEGSSDNAIEVHIHNLRKKLPDNL----VKNVRGVGYMIE 246 >gi|258516208|ref|YP_003192430.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779913|gb|ACV63807.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 227 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/219 (21%), Positives = 101/219 (46%), Gaps = 17/219 (7%) Query: 18 LFGDDGVSLEGFNSLEFEE--WLQSSAREDVSAIEAFLIGKGEKV-----------LELP 64 L +D V + F LE E ++ ++ + +E L G + + +E+ Sbjct: 7 LIIEDEVKISRFIQLELEHEGYIVEKEKDGRAGLEKALHGNHDLIILDVMLPSLNGMEIL 66 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R S++P+I ++ + + D G DD + KP E+LAR+ ++ +V + Sbjct: 67 RRLRQVSEIPVIMLTAKDDVMDKVMGLDFGADDYLTKPFAIEELLARIRVAFKHKRVQHE 126 Query: 125 RA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ + G +++ E L ++E +L+ LM N + + I ++G + Sbjct: 127 KSDVIQIGNLKLDLYKYTVSFNNEPIDLTKKEFDLLKLLMVNNEIVLTRDTILEKVWG-Y 185 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + A + N+V+ ++ LR K+ ++ + + R +GY + Sbjct: 186 NYAGDTNIVDVYVRYLRIKIDDRYHQKFIHTVRGVGYQL 224 >gi|229161494|ref|ZP_04289475.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228622031|gb|EEK78876.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 235 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/167 (23%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P++ IS + ++G DD ++KP H+ ++A++ + RR Sbjct: 65 RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 KV E + ++ + +++ + + R E +LE LM N + V++ + + ++ Sbjct: 125 PKVEERMVEQHGLCLYPERLVLKLKNQEIDITRNEAILLETLMKNYPRVVSREVLLNKLW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223 + V++N + + +++RKKL+ D +++ R +GY I W+ Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLHIEDAIETIRSVGYRLHITWD 230 >gi|257785147|ref|YP_003180364.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] gi|257473654|gb|ACV51773.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] Length = 237 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 12/157 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE+V R IR S VP+I ++ ++ + + G DD + KP RE++ARV A++ Sbjct: 64 GERVC---RAIRDTSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALF 120 Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR + A + G + + G + E L E ++L L G+ + + Sbjct: 121 RRTYSEPDTAVDVLDYGTLTIDISGHKILINNEEVDLTASEFKLLTTLARYPGRVYTRME 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 + + G +D E ++SH+ K LR KLG DP Sbjct: 181 LVEKVLG-YDFEGYERTIDSHV----KNLRAKLGDDP 212 >gi|169335528|ref|ZP_02862721.1| hypothetical protein ANASTE_01942 [Anaerofustis stercorihominis DSM 17244] gi|169258266|gb|EDS72232.1| hypothetical protein ANASTE_01942 [Anaerofustis stercorihominis DSM 17244] Length = 235 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 89/194 (45%), Gaps = 24/194 (12%) Query: 31 SLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIGIS 79 +LE +E+ +A+ A++ + K + +L ++ + IR S +P+I +S Sbjct: 21 TLESKEYKFHTAKNGKQALDEAISRKPDVILLDLGLPDMDGVDIIKKIRGWSNMPIIVVS 80 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR- 138 + +D D+G DD + KP E+LAR+ +RRL N+ +F +G Sbjct: 81 ARSEDKDKIDALDAGADDYLTKPFSVDELLARLRVAFRRLDYQNSNYNKNESPIFINGGL 140 Query: 139 --DPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189 D E G VF L E +++ L N GK + I + I+G FD V Sbjct: 141 KIDYE-SGCVFVDDKEVHLTPNEYKLICLLSKNVGKVLTHKYILNEIWGTAFDSDVAS-- 197 Query: 190 VESHISKLRKKLRN 203 + +++ LRKK+ N Sbjct: 198 LRVYMATLRKKIEN 211 >gi|182416794|ref|ZP_02948188.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237667398|ref|ZP_04527382.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379374|gb|EDT76871.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237655746|gb|EEP53302.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 224 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 72/140 (51%), Gaps = 3/140 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124 +R S VP+I ++ L +D G DD + KP + ++A+V A+ +R + + ++ Sbjct: 68 LREVSTVPVILLTAKSEEDDKLQGYDYGADDYITKPFSPKVLIAKVKALLKRSREDIDSS 127 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E + + + V G+ L +E +L YL+ N G +++ I ++GL D Sbjct: 128 SQEFNGLTINKLSHEVRVNGKEITLSPKEYELLIYLVTNEGIALSRDNILDNVWGL-DYY 186 Query: 185 VEENVVESHISKLRKKLRNK 204 + V++++ +LR+KL ++ Sbjct: 187 GDIRTVDTNVKRLREKLLDR 206 >gi|154496344|ref|ZP_02035040.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC 29799] gi|150274427|gb|EDN01504.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC 29799] Length = 230 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 6/142 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121 IR + P+I ++ + + + G DD + KP +E+LAR+ A+ RR Sbjct: 68 IRESDKTPVIMLTAKGETEDKVHGLEGGADDYIVKPFEMKEVLARIHAVLRRFGAEEEGS 127 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + D + V G+ P +E +L +L A+ + + Q+ ++G F Sbjct: 128 GEKKLSFDKLVINLDSYELLVDGKRVDTPPKELELLYHLAASPNRVFTRNQLLDEVWG-F 186 Query: 182 DEAVEENVVESHISKLRKKLRN 203 D + V+ HI +LR+KL Sbjct: 187 DYFGDSRTVDVHIKRLREKLEG 208 >gi|254245751|ref|ZP_04939072.1| Response regulator receiver [Burkholderia cenocepacia PC184] gi|124870527|gb|EAY62243.1| Response regulator receiver [Burkholderia cenocepacia PC184] Length = 235 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 15/159 (9%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122 +P+I ++ Q + + G DD V KP +E++AR+ A+ RR + ++ Sbjct: 78 HIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRAPQLTEDVVSIN 137 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 R + RV + G E++ ++ P E R+L + M + + ++TQ+ ++G D Sbjct: 138 GLRLDPATHRVAAHGDGSEIKLDLGPT---EFRLLHFFMTHPERVHSRTQLLDQVWG--D 192 Query: 183 EA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 VEE V+ HI +LR L+ +++ R GY + Sbjct: 193 HVFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231 >gi|194367537|ref|YP_002030147.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194350341|gb|ACF53464.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 219 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/148 (24%), Positives = 74/148 (50%), Gaps = 6/148 (4%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIR 132 P++ ++ L FD+G DD + KP E++ R+ A+ RR ++ R GP++ Sbjct: 74 PVLVLTARGRWHDKLAGFDAGADDYLTKPFQADELVLRLRALIRRSHGHASPRLRCGPLQ 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + + E+ G+ PL +E R+L Y + + G+ + + ++ + FD + + + Sbjct: 134 LDVNAGRFELDGQALPLSPQEFRLLSYFIHHSGQVIGRDRLGEQV---FDGGHDPD--SN 188 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + L ++R KLG D + + R G+ + Sbjct: 189 ALDVLLGRVRRKLGIDLIQTVRGQGWRL 216 >gi|170703189|ref|ZP_02893997.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|172062527|ref|YP_001810178.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|170131903|gb|EDT00423.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|171995044|gb|ACB65962.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 221 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 7/159 (4%) Query: 65 RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +RA S P++ ++ ++ + G DD + KP +RE+ ARV A+ RR Sbjct: 64 RNLRASGSTTPVLLVTARSAIDDRVSGLGFGADDYLVKPFDYRELEARVQALLRRNSGHA 123 Query: 124 NRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLF 181 N T G + + R E+ G+ L R+E +LE ++A+R +R+ +K ++ + ++ Sbjct: 124 NDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLE-ILASRPQRIFSKDELLNQLFSFG 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E N VE +++++R+KL+ + + R +GY I Sbjct: 183 NEP-SANAVEQYVTRVRRKLQGS--SVEIRTARGMGYQI 218 >gi|315221901|ref|ZP_07863812.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315188867|gb|EFU22571.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 76/157 (48%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S+VP++ +S + + G DD V KP + +LA+V + RR Sbjct: 71 IRKISKVPIMFLSSRYQAMDIVMAINMGGDDFVTKPFDNNVLLAKVQGLLRRSYEFGTDQ 130 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + E + + D +GEV L + E +IL L + G VA+ + ++ D Sbjct: 131 SLLEYHGVILNLKSMDMVYEGEVITLTKNEFQILRVLFEHSGSIVARDDLMKELWN-SDF 189 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL + +++K+ +GY + Sbjct: 190 FIDDNTLSVNVARLRKKLEEVGLKNFIETKKGIGYRL 226 >gi|315037328|ref|YP_004030896.1| response regulator [Lactobacillus amylovorus GRL 1112] gi|325955796|ref|YP_004286406.1| response regulator [Lactobacillus acidophilus 30SC] gi|312275461|gb|ADQ58101.1| putative response regulator [Lactobacillus amylovorus GRL 1112] gi|325332361|gb|ADZ06269.1| response regulator [Lactobacillus acidophilus 30SC] gi|327182633|gb|AEA31080.1| response regulator [Lactobacillus amylovorus GRL 1118] Length = 238 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/217 (23%), Positives = 100/217 (46%), Gaps = 24/217 (11%) Query: 23 GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGIS 79 ++ EGF+ + + EE +Q D + L+ + LE+ R +R +P+I ++ Sbjct: 21 NLTKEGFDVDTAYDGEEAVQKVDEYDPDLMILDLMLPKKDGLEVAREVRQTHDMPIIMVT 80 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-----SNNRAE------T 128 + + + G DD V KP +RE++ARV A RR + + N+ E Sbjct: 81 AKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDIVKKAEAANQEEPDKNIKI 140 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + D E G+ L RE +L YL + G+ + + + ++G +D + Sbjct: 141 GNLLIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTREHLLQTVWG-YDYFGDVR 199 Query: 189 VVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSI 220 V+ + +LR+K+ N +P+ ++R +GY + Sbjct: 200 TVDVTVHRLREKIEN----NPIQPQVLVTRRGVGYYV 232 >gi|309790846|ref|ZP_07685390.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308227133|gb|EFO80817.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 26/211 (12%) Query: 23 GVSLEGFN---------SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQV 73 G+ LEGF LEF A D+ ++ L G +E+ R +RA S V Sbjct: 21 GLILEGFQVSVAHDGPQGLEFAR----EAAHDLVVLDLML--PGIDGIEVARRLRAASDV 74 Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133 P+I ++ S+ + ++G DD + KP E+LAR+ RR A+ I Sbjct: 75 PIIILTARDSVPDRVTGLEAGADDYLVKPFAFAELLARIRVQLRR----RQSAQQSDILR 130 Query: 134 FSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 F++ R+ + L +E +L+ M + + + + I+ ++G +D E Sbjct: 131 FANLTLDTAARELRIGDRRIDLTAKEYDLLDLFMRHPNQVLTREVIYDRVWG-YDFGGES 189 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 N++E ++ LR+KL G + + R GY Sbjct: 190 NIIEVYVRYLRQKLEAGGGSRVIQTVRGAGY 220 >gi|303241736|ref|ZP_07328233.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590737|gb|EFL60488.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 228 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 15/173 (8%) Query: 46 VSAIEAF-----------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94 + AIEAF ++ G ++ R IR S +P+I +S + + G Sbjct: 38 IKAIEAFKTFAPNIVVLDIMLPGADGWQVCREIRQVSNIPIIMLSAKGETFDKVLGLELG 97 Query: 95 VDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGR-DPEVQGEVFPLPR 151 DD + KP +E++ARV A+ RR K + + P V + +V G +P Sbjct: 98 ADDYIVKPFESKELVARVKAVLRRYEHKEIDVKEVVYPNLVINKSNYTLKVNGTDMEVPP 157 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 +E +L +L +N K + Q+ ++G FD + V+ HI +LR+K+ ++ Sbjct: 158 KELELLYFLASNPNKVFTRDQLLEQVWG-FDFYGDSRTVDVHIKRLREKIESE 209 >gi|266625779|ref|ZP_06118714.1| DNA-binding response regulator VicR [Clostridium hathewayi DSM 13479] gi|288862317|gb|EFC94615.1| DNA-binding response regulator VicR [Clostridium hathewayi DSM 13479] Length = 183 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 70/154 (45%), Gaps = 22/154 (14%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S ++ +S + SG DD + KP RE+ RV A RR + Sbjct: 38 LEVCRRIREFSYCSILFLSSRNDDIDKILGLSSGGDDYITKPFSPREVAFRVKAQLRRQR 97 Query: 121 VSNNRA-------ETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 N + GP+ RV+ +GR+ + G RE +L YLM N K Sbjct: 98 YQNAPSPAVSSVLTAGPLSLDQESGRVWKNGREISLTG-------REFLLLSYLMENTDK 150 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 ++K +++ ++G + +N + HI LR+K Sbjct: 151 IISKERLYEQVWGE-SSCICDNTIMVHIRHLREK 183 >gi|238922778|ref|YP_002936291.1| hypothetical protein EUBREC_0366 [Eubacterium rectale ATCC 33656] gi|238874450|gb|ACR74157.1| hypothetical protein EUBREC_0366 [Eubacterium rectale ATCC 33656] Length = 231 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 76/171 (44%), Gaps = 16/171 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E R +R VP++ +S L+ + G DD + KP + E++++V A+ RR Sbjct: 60 IETCRRMRERHSVPILFLSAKSEELDKLEGLEVGGDDYMTKPFSNMELISKVKALIRRYL 119 Query: 121 V----SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 V S NR ET +++F++ E L +E IL+ LM N + Sbjct: 120 VYDSGSANRTNKDETIETDGLKLFTNRNKVEFNDNEIKLTGKEYEILKLLMKNPDRIYTI 179 Query: 171 TQIFSAIYGLFDEAVE---ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I+ ++ DEA +N V HI LR KL G + ++ GY Sbjct: 180 EMIYEMVW---DEAFTYNAKNTVMVHIKNLRNKLIKACGDACIHTEWGRGY 227 >gi|228940323|ref|ZP_04102894.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973239|ref|ZP_04133828.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228786435|gb|EEM34425.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819449|gb|EEM65503.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940961|gb|AEA16857.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 69 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|254383670|ref|ZP_04999019.1| LndI [Streptomyces sp. Mg1] gi|194342564|gb|EDX23530.1| LndI [Streptomyces sp. Mg1] Length = 263 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 8/145 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA PLI ++ S + +G DD + KP RE+LAR+ A+ RR + Sbjct: 103 EVCRAIRAVGDTPLIAVTARGSELDRVLGLQAGADDYLVKPYGFRELLARMEAVMRRARP 162 Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP+R+ + R+ + G L R+E +L L + +++ Q+ + ++ Sbjct: 163 RPQASRVITHGPLRIDAGTREVLLAGRPVELTRKEFDLLHLLASQPEAVISRRQLMTQVW 222 Query: 179 GLFDEAVEE--NVVESHISKLRKKL 201 D+ +++H+S LR KL Sbjct: 223 ---DDTWSHRGRTIDTHVSSLRGKL 244 >gi|153940311|ref|YP_001391825.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936207|gb|ABS41705.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319851|gb|ADG00229.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 4/113 (3%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150 G DD + KP RE++ARV A+ RR N +++ G I V + GE L Sbjct: 99 GADDYITKPFSVREMVARVKAVLRRRTTINIESKSYILGNIVVDFEKHSLTKAGEKIELT 158 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 +E +LE L+ N+GK + + + I+G ++ E V+ HI LRKK+ + Sbjct: 159 LKEFELLEVLIKNKGKVMTRDFLLDRIWG-YEYIGETRTVDVHIRHLRKKIED 210 >gi|114566483|ref|YP_753637.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337418|gb|ABI68266.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 239 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/169 (24%), Positives = 82/169 (48%), Gaps = 12/169 (7%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ R ++ HS+ +P+I ++ T+ + G DD + KP RE++ARV A R Sbjct: 63 LEVCRTLKQHSEYKTIPIIMLTAKGEEIDTILGLEMGADDYIKKPFSPREMVARVKARLR 122 Query: 118 RLKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 L++ G + V + + + E L +E +L + +N+GK + Sbjct: 123 ALRILKAEKAMGQKAYVFKELTVVPEKYEAFIGEEKLELTPKEFELLRLMASNQGKVFTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 + ++G ++ + + V+ HI LR+KL + + D +++ R +GY Sbjct: 183 EVLLEKVWG-YEFSGDTRTVDVHIRHLRQKLGDDSTYPDYIETVRGVGY 230 >gi|46200280|ref|YP_005947.1| two-component response regulator [Thermus thermophilus HB27] gi|46197908|gb|AAS82320.1| two-component response regulator [Thermus thermophilus HB27] Length = 223 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 7/124 (5%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152 G DD + KP RE+LAR+ A+ RR R GP+ V +GR ++GE L Sbjct: 94 EGADDYLGKPFSLRELLARIKALLRRAG-KEGRRRFGPLEVDLEGRRAYLEGEPLRLSPT 152 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E +L G+ + ++ ++G E E VV++++ LRKKLR+ DP ++ Sbjct: 153 EMNLLLVFAQAPGRVFTRGELLERVWGPEFEG-SERVVDAYVRLLRKKLRD----DP-EA 206 Query: 213 KRFL 216 RF+ Sbjct: 207 PRFI 210 >gi|30021338|ref|NP_832969.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|118478527|ref|YP_895678.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|196042921|ref|ZP_03110160.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206968886|ref|ZP_03229841.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218233754|ref|YP_002367955.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228921982|ref|ZP_04085293.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228953540|ref|ZP_04115583.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229070715|ref|ZP_04203945.1| DNA-binding response regulator [Bacillus cereus F65185] gi|229080448|ref|ZP_04212969.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|229097707|ref|ZP_04228662.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|229103767|ref|ZP_04234447.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|229116716|ref|ZP_04246100.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|229128513|ref|ZP_04257491.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|229145816|ref|ZP_04274196.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|229151413|ref|ZP_04279616.1| DNA-binding response regulator [Bacillus cereus m1550] gi|229179503|ref|ZP_04306856.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|229185458|ref|ZP_04312640.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|296503743|ref|YP_003665443.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|29896892|gb|AAP10170.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|118417752|gb|ABK86171.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|196026405|gb|EDX65073.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206735927|gb|EDZ53085.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218161711|gb|ACK61703.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228598046|gb|EEK55684.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228604004|gb|EEK61472.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228631956|gb|EEK88582.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228637647|gb|EEK94097.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228654706|gb|EEL10566.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|228666548|gb|EEL22006.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228679643|gb|EEL33840.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228685652|gb|EEL39575.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228702750|gb|EEL55215.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228712385|gb|EEL64330.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228806124|gb|EEM52700.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228837590|gb|EEM82920.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296324795|gb|ADH07723.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 69 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|326389116|ref|ZP_08210696.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326206347|gb|EGD57184.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 229 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 8/152 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133 P++ +S S++ ++ D G DD + KP E++ARV AI RR G + V Sbjct: 75 PVLMLSALGSVKDRIEGLDGGADDYLTKPFDMDELVARVHAIARRAPARAAEEAQG-MNV 133 Query: 134 FSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 DP F + R+ +L +LM + + V + + ++G + + N Sbjct: 134 GRLWLDPRRHAACFGEASVQVNRKLYSLLAHLMLHADRLVTRDMLLEQVWG-YTFSPGTN 192 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +VES++S+LR +L+ ++G DP++++R GY + Sbjct: 193 IVESNMSRLRTRLQ-EIGIDPIETQRGAGYVL 223 >gi|312862512|ref|ZP_07722754.1| response regulator ArlR [Streptococcus vestibularis F0396] gi|311101917|gb|EFQ60118.1| response regulator ArlR [Streptococcus vestibularis F0396] Length = 229 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 9/137 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG------ 144 D G DD + KP E+LAR+ A +RR + + + D + +VQ Sbjct: 92 LDRGADDYIVKPFAIEELLARIRATFRRQDIEATKNAPSKASTYRDLK-LDVQNRAVVRG 150 Query: 145 -EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 E PL +RE +L L++N + + + ++ ++ +D+ +E NVV+ +I LR K+ Sbjct: 151 DEAIPLTKREFDLLNTLLSNMNQVMTREELLLQVWK-YDDVIETNVVDVYIRYLRGKIDI 209 Query: 204 KLGFDPVDSKRFLGYSI 220 + + R +GY I Sbjct: 210 PGKESYIQTVRGMGYVI 226 >gi|299137820|ref|ZP_07031001.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298600461|gb|EFI56618.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 226 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 2/153 (1%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAE 127 A P++ ++ + + DSGVDD + KP E+ AR+ A+ RR L ++ + Sbjct: 69 AKVSTPILMLTARDATSDVVRGLDSGVDDYLTKPFAFAELFARLRALGRRTLATASLSYQ 128 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 + + G L R E +LE++M N + + I +A++G ++ VE Sbjct: 129 LEDLCLDPHTHIASRSGRAIMLTRTEFLLLEFMMRNPHTVLRREAIINAVWG-YEHTVEN 187 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N +++ + +LR K+ G + + R GY + Sbjct: 188 NTLDAFMKQLRSKVDEGHGNKLIHTVRGFGYKL 220 >gi|291545612|emb|CBL18720.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 230 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 13/144 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + +P++ + + + +G DD + KP E++AR+A++ RR N++A Sbjct: 67 IRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNHQA 126 Query: 127 ------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179 + +++ + R F LP +E +L Y ++GK + K QI+ ++G Sbjct: 127 GAVQKLDFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVWGE 186 Query: 180 --LFDEAVEENVVESHISKLRKKL 201 +D++ N++ + IS+LRKKL Sbjct: 187 EYFYDDS---NIM-AIISRLRKKL 206 >gi|228923607|ref|ZP_04086887.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836076|gb|EEM81437.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172 KV+ N++ E G + + + R V GE L +E IL YL+A+ K+V + Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDIL-YLLASHPKKVYNVEN 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 IF ++ D+ E N V HI LRKKL Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210 >gi|228948817|ref|ZP_04111093.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810874|gb|EEM57219.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 222 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 7/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++D S + + +G DD + KP E++ARV AI RR Sbjct: 59 EICRQIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 117 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + ET + +F D V+ G+ L +RE +L +L+ N+ +++ + + Sbjct: 118 CNQQHETTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIRNKNTILSREMLLNQ 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + V NVV+ +I +RKKL+ + + + GYS+ Sbjct: 178 VWG-HNVVVNPNVVDLYIGYIRKKLKCEKKNRYIQTIHGRGYSM 220 >gi|223983562|ref|ZP_03633745.1| hypothetical protein HOLDEFILI_01026 [Holdemania filiformis DSM 12042] gi|223964490|gb|EEF68819.1| hypothetical protein HOLDEFILI_01026 [Holdemania filiformis DSM 12042] Length = 219 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 13/193 (6%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL GY AL DG +L +++ + + I ++ GE L IR Sbjct: 20 ALTTAGYAALEMSDGRTL-----------IETLEQGGIDLILLDVMLPGEDGFTLLDKIR 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 + QVP+I +S L + +G DD + KP E+LARV ++ RR N+ + Sbjct: 69 RY-QVPVIFVSARSQLADKVQALQAGADDYITKPFEMMELLARVESVLRRTGRKNSVLKF 127 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 + + D R V L +E + +L+ NR + + +I ++ D Sbjct: 128 QNLTIDEDQRQVYGPAGVIELTPKEFDLFVFLIRNRNIALYREEILEKVWH-DDYEGTTR 186 Query: 189 VVESHISKLRKKL 201 V+ HI+ LRKKL Sbjct: 187 TVDMHIASLRKKL 199 >gi|191638201|ref|YP_001987367.1| Response regulator receiver:Transcriptional regulatory protein-like [Lactobacillus casei BL23] gi|190712503|emb|CAQ66509.1| Response regulator receiver:Transcriptional regulatory protein-like [Lactobacillus casei BL23] gi|327382233|gb|AEA53709.1| hypothetical protein LC2W_1375 [Lactobacillus casei LC2W] gi|327385430|gb|AEA56904.1| hypothetical protein LCBD_1407 [Lactobacillus casei BD-II] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 12/159 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE VL IR S VP++ ++ Q T+ G +D + KP E+LARV Sbjct: 59 GESVLT---TIRKTSSVPVLILTAIQDKQKTVALLQQGANDYLTKPFDIDELLARVQVQL 115 Query: 117 RR-LKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R+ L + +A + G I + V + LP++E +L +M + + K Sbjct: 116 RQTLPAPSAKAQDHLQVGEITLNLKRHAVTVNNQPLTLPKKEYAMLALMMRDPHQVFDKQ 175 Query: 172 QIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFDP 209 Q++ ++G F A +N + HIS LR K+ N L DP Sbjct: 176 QLYEQVWGEPFMNA--DNTLNVHISNLRTKI-NDLAKDP 211 >gi|170748302|ref|YP_001754562.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170654824|gb|ACB23879.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 222 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 10/161 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ A +P++ ++ + ++ D+G DD + KP E++AR+ AI RR + Sbjct: 63 LRRLRAAEVALPVLILTARDGWRERVEGIDAGADDYLAKPFRMEELVARLRAILRR--TA 120 Query: 123 NNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + A G + + + R V G L E R+L +L+ G+ V ++ ++G Sbjct: 121 GHAAPVLRAGAVELDTRTRAVSVDGRPAELTALEYRLLAFLLHRPGQVVPAGELLDHLHG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E E N +E+ +++LR+ KLG ++++R GY I Sbjct: 181 VGTER-EANALEALLTRLRR----KLGPGVIETRRGQGYLI 216 >gi|206976960|ref|ZP_03237861.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|222098325|ref|YP_002532382.1| DNA-binding response regulator [Bacillus cereus Q1] gi|206744765|gb|EDZ56171.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|221242383|gb|ACM15093.1| DNA-binding response regulator [Bacillus cereus Q1] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172 KV+ N++ E G + + + R V GE L +E IL YL+A+ K+V + Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDIL-YLLASHPKKVYNVEN 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 IF ++ D+ E N V HI LRKKL Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210 >gi|86605140|ref|YP_473903.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86553682|gb|ABC98640.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 246 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 65/125 (52%), Gaps = 4/125 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAETG 129 P++ ++ +L ++ D+G DD + KP RE+LARV A+ RR R + G Sbjct: 77 TPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRRAAGPGEGIPRLQIG 136 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + + + QG + L ++E R+LEY MA+ G+ + QI+ ++ ++ NV Sbjct: 137 DLELDRENQVAYRQGRMIHLSQKEFRLLEYFMAHPGQLLTHEQIYERVWA-GEDPPSSNV 195 Query: 190 VESHI 194 + + + Sbjct: 196 LAAQV 200 >gi|89893944|ref|YP_517431.1| hypothetical protein DSY1198 [Desulfitobacterium hafniense Y51] gi|219668318|ref|YP_002458753.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333392|dbj|BAE82987.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538578|gb|ACL20317.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 231 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 9/147 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IR S VP+I I+ + D G DD + KP E++AR+ AI RR Sbjct: 61 FEVCREIRKTSNVPIIMITARGEDFERIMGLDIGADDYIVKPFSPGEVMARIRAILRR-- 118 Query: 121 VSNNRAETGPIRVFSDGR----DPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIF 174 +S N E I +++ D V + P L ++E IL L N + ++ + Sbjct: 119 ISQNDEEKKQILSYANLMINLDDYLVTIDQCPVSLTKKEIEILWTLATNHNRVFSRDNLL 178 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++++G +D + V+SHI +LR KL Sbjct: 179 NSVWG-YDYFGDIRTVDSHIKRLRSKL 204 >gi|84494860|ref|ZP_00993979.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84384353|gb|EAQ00233.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 12/168 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R I+A VP++ ++ L G DD V KP RE++AR A+ RR++ Sbjct: 61 LEVCRRIQAIRPVPVLMLTARDEETDILVGLGVGADDYVTKPFRMREVVARTHALLRRVE 120 Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + A T G I + R V G+ L E +L L + G ++ Q+ Sbjct: 121 RAAELASTPAPTTHVGAIEIDGPARRVTVDGQDVHLTPLEFDLLAALASTPGAVRSREQL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D A ++SH+ K LR K+G V + +GY+++ Sbjct: 181 MGEVWGWAD-ASGTRTLDSHV----KSLRAKIGAARVRTVHGVGYALE 223 >gi|331268490|ref|YP_004394982.1| DNA-binding response regulator [Clostridium botulinum BKT015925] gi|329125040|gb|AEB74985.1| DNA-binding response regulator [Clostridium botulinum BKT015925] Length = 228 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 5/142 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S +P+I I+ + + G DD + KPI +E+LAR+ A+ RR +N Sbjct: 62 IRRKSDIPIIFITACDEEANIVLGLEIGGDDYITKPIRIKEMLARINAVLRRKSTANKEQ 121 Query: 127 ETGPI---RVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 T I + D +V E L E ++L M N+ V + + I+ + Sbjct: 122 STKTIVSGDIVVDILKIKVYKNNEEIILTPAEYKLLVIFMKNKNNVVTRGTLLEKIWDVD 181 Query: 182 DEAVEENVVESHISKLRKKLRN 203 E V+ N V ++ +LR+K+ + Sbjct: 182 GEFVDSNTVNVYVKRLREKIED 203 >gi|322378815|ref|ZP_08053241.1| putative transcriptional regulator [Helicobacter suis HS1] gi|322380144|ref|ZP_08054392.1| transcriptional regulator [Helicobacter suis HS5] gi|321147449|gb|EFX42101.1| transcriptional regulator [Helicobacter suis HS5] gi|321148739|gb|EFX43213.1| putative transcriptional regulator [Helicobacter suis HS1] Length = 226 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 14/222 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+++ A + A + ++ +LE E+ S D+ I + + G + Sbjct: 3 ILLVENNADLSKEISAYLSEKSFQVDVAENLEDGEYYISIRNYDLVLI-SLELSDGNGLS 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +P H+ + I +++ S + + F GVDD + KP ++AR+ A R Sbjct: 62 LVPYAKAKHASIVSIMLANNASSEQEIKAFKEGVDDFIAKPFDLGVLVARIEARLRFWGS 121 Query: 122 SNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S E I ++ G++ EV+G+ F +L +L +R + V+K Q+ A Sbjct: 122 SIIEIEDLVINPDEEKIVYKGKEIEVKGKPF-------EVLTHLARHRDQIVSKEQLLDA 174 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I+ E V NV+E I+++R+K+ LG V++ R GY Sbjct: 175 IWE-EPELVTPNVIEVAINQIRQKMDKPLGISTVETVRRRGY 215 >gi|315655078|ref|ZP_07907980.1| phosphate regulon response regulator [Mobiluncus curtisii ATCC 51333] gi|315490559|gb|EFU80182.1| phosphate regulon response regulator [Mobiluncus curtisii ATCC 51333] Length = 227 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 108/230 (46%), Gaps = 15/230 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D ++D + G G + GF +++E+ ++ I ++ G Sbjct: 1 MIYFVEDDLNIRDLVVYTLGSTGFTARGFA--DYQEFREAMMELLPEMILLDIMLPGVDG 58 Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +++ R IRA+ + +P+I ++ + + D G DD + KP E+++R+ A+ R Sbjct: 59 IQILRRIRANPETEGIPVIMVTAKGAEFDKVKSLDLGADDYITKPFGMMELVSRIRAVLR 118 Query: 118 RL-KVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R+ ++++ AE G I + V+G L +E ++LE LM+ G ++ Sbjct: 119 RVARLTDPTAEDEEILTIGTIDLNLPRHTVAVEGREVKLTLKEYQLLEELMSQPGILFSR 178 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +I+G + V+ HI LRKKL +++ R +GY I Sbjct: 179 DKLLDSIWG-YSFHGGTRTVDVHIRTLRKKLGP--AAKHIETVRGVGYKI 225 >gi|301056578|ref|YP_003794789.1| putative two-component response regulator [Bacillus anthracis CI] gi|300378747|gb|ADK07651.1| putative two-component response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 82/161 (50%), Gaps = 7/161 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S+VP+I +S + + + G DD V KP + ++A++ A+ RR S Sbjct: 64 RKIREVSKVPIIFLSSRDNPMDMVMAMNMGGDDFVQKPFYTDVLVAKIQALMRR-TYSYT 122 Query: 125 RAETGPIR---VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ET + V + + EV ++ L + E +IL+ LM N G V++ I ++ Sbjct: 123 QTETNVVEYEGVVLNLQSGEVTYHNQILELTKNEFKILQILMQNIGSIVSRDNIMRKLWE 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + V++N + +++++RKKL + + +K+ GY I Sbjct: 183 -NESFVDDNTLTVNVARVRKKLAELGKEEFIHTKKGQGYII 222 >gi|299145538|ref|ZP_07038606.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] gi|298516029|gb|EFI39910.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] Length = 228 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 11/160 (6%) Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 I R + +P++ ++ S LD FD+G DD + KP RE+ AR+ + +R V+ N Sbjct: 67 IRRTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR--VAGNA 124 Query: 126 AETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E V++D R D E L +E +L Y++ N + +++ +I ++ Sbjct: 125 QELPQELVYADLRIDLQRKDVERNSISIKLSPKEYNLLLYMVENAERVLSRVEIAEKVWN 184 Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 FD N ++ +I+ LRKK+ + +K +G+ Sbjct: 185 THFDTGT--NFIDVYINYLRKKIDRDFEPKLIHTKAGMGF 222 >gi|289626740|ref|ZP_06459694.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648659|ref|ZP_06480002.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|298487563|ref|ZP_07005605.1| Two-component system response regulator QseB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157947|gb|EFH99025.1| Two-component system response regulator QseB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330870522|gb|EGH05231.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 222 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 24/227 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D +A G G +++ + + + A E I L G L Sbjct: 3 LLLVEDHVPLADELLAALGRQGYAVDWLA--DGRDAVYQGATEPYDLIVLDLGLPGMPGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 E+ + R P++ ++ S ++ SG DD + KP H E+ R+ A+ RR Sbjct: 61 EVLQQWRGKGLATPVLILTARGSWSERIEGLKSGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L+ + + G V DG D ++ F R+L Y M + G+ ++K+ Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEF-------RLLRYFMLHPGQILSKS 173 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +Y +E + NV+E H++ LR+ KLG V+++R GY Sbjct: 174 HLSEHLYDGENER-DSNVIEVHVNHLRR----KLGRAVVETRRGQGY 215 >gi|326316348|ref|YP_004234020.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373184|gb|ADX45453.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 6/155 (3%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G LE+ R R + P+I ++ L + G DD + KP RE++ARV + Sbjct: 62 GMDGLEVLRQARRRTDRPIIMLTARVEEVDRLIGLELGADDYICKPFSPREVVARVRTVL 121 Query: 117 RRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 RR + A+ P+ + ++G L RE R+L+ L ++ G+ ++ Q+ Sbjct: 122 RRSTARPSPAAQDAPLVLDEAFWQVHLRGTPVSLTPREFRLLQALASHSGRIFSRAQLLD 181 Query: 176 AIYGLFDEA--VEENVVESHISKLRKKLRNKLGFD 208 Y D+ V E ++SHI LR+KLR G D Sbjct: 182 MAY---DDTLDVNERAIDSHIKNLRRKLRAADGSD 213 >gi|260664969|ref|ZP_05865819.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii SJ-7A-US] gi|260561023|gb|EEX26997.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii SJ-7A-US] Length = 237 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 12/171 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R +P+I ++ + + + G DD V KP +RE++ARV A RR Sbjct: 62 LEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRD 121 Query: 121 VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + +A+ G + + D E G+ L RE +L YL ++ G+ + + Sbjct: 122 IVQKQADESENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + +G +D + V+ + +LR+K+ N + + ++R +GY + Sbjct: 182 EHLLQTAWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGYYV 231 >gi|260548814|ref|ZP_05823036.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260407982|gb|EEX01453.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 228 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 3/142 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +R S +P+I ++ + + G DD V KP +E++ARV A+ RRL+ Sbjct: 61 LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLE 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 121 RKAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHINPD 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 FD V + V++SHI LR+K+ Sbjct: 181 SFD--VADRVIDSHIKNLRRKI 200 >gi|229075211|ref|ZP_04208205.1| DNA-binding response regulator [Bacillus cereus Rock4-18] gi|228707988|gb|EEL60167.1| DNA-binding response regulator [Bacillus cereus Rock4-18] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 69 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|225575437|ref|ZP_03784047.1| hypothetical protein RUMHYD_03527 [Blautia hydrogenotrophica DSM 10507] gi|225037382|gb|EEG47628.1| hypothetical protein RUMHYD_03527 [Blautia hydrogenotrophica DSM 10507] Length = 226 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 18/166 (10%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 L +I + + P++ ++ S++ + D G DD + KP E+LAR+ + R+ Sbjct: 63 LQKIRKEGTSTPVLLLTAKDSIEDRVTGLDLGADDYLVKPFAFEELLARIRVMLRKSAAV 122 Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 +K++N + RVF D + E L +E IL Y+ N+G +++ + Sbjct: 123 ETNTNVVKIANLTVDLNTHRVFRDETEIE-------LSNKEFSILRYMCMNKGVVLSRDK 175 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 I I+ +D A NVV+ +I LR+K+ + + + R GY Sbjct: 176 IEEHIWN-YDYAGASNVVDVYIRYLRRKIDDSYEPKLIHTIRGAGY 220 >gi|218247106|ref|YP_002372477.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257060175|ref|YP_003138063.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218167584|gb|ACK66321.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256590341|gb|ACV01228.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 243 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 73/145 (50%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR++ Sbjct: 71 LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKNGVPG 130 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ + IR+ ++ R E L E +LE L++ G+ ++++I ++G Sbjct: 131 IPSSGVLQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 190 Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203 E V+ VV+ HIS+LR KL + Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215 >gi|172040160|ref|YP_001799874.1| two-component system response regulator MtrA [Corynebacterium urealyticum DSM 7109] gi|171851464|emb|CAQ04440.1| two-component system response regulator MtrA [Corynebacterium urealyticum DSM 7109] Length = 226 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/203 (23%), Positives = 96/203 (47%), Gaps = 16/203 (7%) Query: 27 EGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF+++ + + + ++ D I ++ G +++ R +R S VP++ ++ Sbjct: 25 EGFDTVVVGDGNDAVTAAQEHDPDLILLDVMLPGMSGIDVCRTVREFSTVPIVMLTARTD 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDP 140 + +SG DD + KP +E++ARV A RR + + T G + + + G + Sbjct: 85 TVDVVLGLESGADDYITKPFKPKELIARVRARLRRSPEEADESTTIRVGEVEIDTAGHEV 144 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 GEV L E +L L + G+ ++ ++ ++G + ++ + +V H+ +LR K Sbjct: 145 TRGGEVINLTPIEFDLLTTLASRPGQVFSREELLEKVWG-YRKSGDTRLVNVHVQRLRSK 203 Query: 201 LRNKLGFDPVDSK-----RFLGY 218 + DP D + R +GY Sbjct: 204 VER----DPDDPQVVLTVRGIGY 222 >gi|126649404|ref|ZP_01721645.1| YxdJ [Bacillus sp. B14905] gi|126593729|gb|EAZ87652.1| YxdJ [Bacillus sp. B14905] Length = 234 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 9/161 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118 R +R H+ P+I IS + ++G DD + KP ++ +LA++ + RR Sbjct: 67 RQLRQHTTCPIIFISARSGEMDQIFALENGGDDFITKPFNYEIVLAKIRSHLRRTYGEYA 126 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G + + + + PL ++E ILE LM N K V + Q+ ++ Sbjct: 127 TRQEERTIKQGQLILHLERMELHKNELEIPLQKKECIILELLMGNAPKVVTREQLLEELW 186 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D+A V+EN + +++++RKKL + +++ R GY Sbjct: 187 D--DQAFVDENTLNVNMTRVRKKLADYQIASTIETVRGAGY 225 >gi|46199440|ref|YP_005107.1| two-component response regulator [Thermus thermophilus HB27] gi|55981471|ref|YP_144768.1| response regulator [Thermus thermophilus HB8] gi|46197066|gb|AAS81480.1| two-component response regulator [Thermus thermophilus HB27] gi|55772884|dbj|BAD71325.1| response regulator [Thermus thermophilus HB8] Length = 227 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 11/165 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR S VP++ ++ ++ + D+G DD + KP E+LARV A RR+ Sbjct: 66 IEVAKRIRKTSNVPILILTAKDRVEDKVAGLDAGADDYLVKPFSIEELLARVRAHLRRV- 124 Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 A TG IRV +GR+ L +E +LE L N GK ++ +I Sbjct: 125 ---TPAITGEIRVADLIINLEGREVFRGNRRIELSNKEFELLELLAKNPGKVFSRYEIEE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + NVV+ +I LRKKL + + R +GY + Sbjct: 182 KVWPGYQGG--SNVVDVYIGYLRKKLEAGGERRLIHTVRGVGYVL 224 >gi|47568723|ref|ZP_00239419.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47554617|gb|EAL12972.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 235 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/167 (23%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P++ IS + ++G DD ++KP H+ ++A++ + RR Sbjct: 65 RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDYA 124 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 KV E + ++ + +++ + + R E +LE LM N + V++ + + ++ Sbjct: 125 PKVEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEAILLEMLMKNYPRVVSREVLLNKLW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223 + V++N + + +++RKKL+ D +++ R +GY I W+ Sbjct: 185 D-SESYVDDNTLSVNTTRVRKKLKTLHIEDAIETIRSVGYRLHITWD 230 >gi|331086634|ref|ZP_08335711.1| hypothetical protein HMPREF0987_02014 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409800|gb|EGG89235.1| hypothetical protein HMPREF0987_02014 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 1/153 (0%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I ++ + F G DD + KP + ARV + R+ Sbjct: 69 IRRESEVPVIMLTANDLEIDQVTGFSLGADDYITKPFSLMILRARVERMLARMAQDKGLT 128 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E R + V+G+ L + E+++L L+ ++G+ + + Q+ I+ + V Sbjct: 129 YEKDGYRFVFEQMYFTVEGKEVTLSKTEQKLLRILIEHQGQTLTREQLVDRIWSDGAQYV 188 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 EEN + + +LRKKL +P+ + LGY Sbjct: 189 EENALSVTVGRLRKKLEQTGKKNPIQTVYGLGY 221 >gi|302336523|ref|YP_003801730.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301320363|gb|ADK68850.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 241 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 23/218 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLE--FEEWLQSSAREDVSAIEAFLIG-KGE 58 +L++D ++D A +G + G + EE+ + S D+ ++ L GE Sbjct: 8 ILLVEDEKAIRDAVAAYLEREGYVVRGVGDGQSALEEFEKHSF--DLIVLDLMLPKLSGE 65 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +V R +R S VP+I ++ ++ + + G DD V KP RE++ARV A+ RR Sbjct: 66 RVC---RAVRETSSVPIIMLTAKGEVEDRIIGLELGADDYVIKPFSPRELVARVRALLRR 122 Query: 119 LKVSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ AE G + + G V+G L E ++L L G+ + Sbjct: 123 ---AHAEAEPQLEVLDFGDLVIDISGHKVMVEGSEVDLTASEFKLLTTLARYPGRVYTRM 179 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 ++ + G +D E ++SH+ K LR KLG DP Sbjct: 180 ELVEKVLG-YDFEGYERTIDSHV----KNLRAKLGDDP 212 >gi|260682198|ref|YP_003213483.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile CD196] gi|260685797|ref|YP_003216930.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile R20291] gi|260208361|emb|CBA60855.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile CD196] gi|260211813|emb|CBE02200.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile R20291] Length = 220 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 9/149 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR P+I +S S + G DD V KP RE++AR+ A RR K Sbjct: 50 FEVCQAIRDDVLCPIIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREK 109 Query: 121 VSN-----NRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S N+ T G + ++ R ++ G+ L + E I+E L + G+ ++ Q Sbjct: 110 RSQYINEENKRSTLYFGKLCLYMKERAIKIDGKNIDLTKIEYDIVELLALHAGQVFSREQ 169 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I+ ++G E VVE + K+R K Sbjct: 170 IYEKVWGCDSEGDSSTVVE-RVKKIRAKF 197 >gi|257440003|ref|ZP_05615758.1| two-component response regulator [Faecalibacterium prausnitzii A2-165] gi|257197551|gb|EEU95835.1| two-component response regulator [Faecalibacterium prausnitzii A2-165] Length = 299 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 8/162 (4%) Query: 65 RIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---- 119 R +RA H P+I ++ L + G DD V KP RE++ARV A+ R Sbjct: 136 REMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMPRS 195 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S+ G + + + V GE L +E +L +L +N+G +++ +I ++ Sbjct: 196 EASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQKVWN 255 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D E+ V++H+ LR L G+ + + +GY D Sbjct: 256 -YDYFGEDRTVDTHVKMLRGHLGKCRGY--IATVWGIGYKFD 294 >gi|242372891|ref|ZP_04818465.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242349375|gb|EES40976.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 224 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 7/159 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---V 121 R +R S VP++ +S + + + G DD + KP + ++A++ AIYRR+ V Sbjct: 64 RKMRQESNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFGV 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R V +D +G+ L + E ILE L+ + + V + + +A++ Sbjct: 124 EEKRTLNWQDTVVDLSKDSIQKGDKTIFLSKTEMIILEMLINKQNQIVTRDTLITALWD- 182 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DEA V +N + ++++LRKKL + + +++K GY Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKLADINMDEAIETKVGKGY 220 >gi|229167840|ref|ZP_04295572.1| Two-component response regulator [Bacillus cereus AH621] gi|228615656|gb|EEK72749.1| Two-component response regulator [Bacillus cereus AH621] Length = 228 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 7/148 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I ++ TL F+ G DD V KP +LAR + S Sbjct: 64 VCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYTS 123 Query: 123 N------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + I V R + + L E IL Y M N+G +++ Q+ + Sbjct: 124 TVNVSIEDTLTSSGIHVHFPSRTVNIDEKEINLTHTEFEILTYFMQNQGIVISREQLINK 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK 204 I+G ++ A ++ V SHI LR KL K Sbjct: 184 IWG-YEFAGDDRTVNSHIRNLRHKLGQK 210 >gi|284028904|ref|YP_003378835.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808197|gb|ADB30036.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 221 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 8/163 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 + + R IR S VP+I ++ + SG DD V KP E+LAR+ A+ RR Sbjct: 61 INVCRQIRTVSDVPVIAVTARGEAADRVRGLRSGADDYVVKPFAISELLARIDAVLRRTG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L R G + V + R +V + L R+E +L L A+ G+ V + Q+ + Sbjct: 121 LLQPRPRVTVGDLTVDIEARTVQVADKPISLTRKEFDVLAVLAAHHGRVVPREQVALYAW 180 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 EA ++ H++ LR KL R +L V + R +GY + Sbjct: 181 QSVFEA-SSRTMDVHVASLRAKLGRPEL----VQTIRGVGYRL 218 >gi|196032134|ref|ZP_03099548.1| transcriptional regulatory protein VanRB [Bacillus cereus W] gi|218904325|ref|YP_002452159.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus cereus AH820] gi|195994885|gb|EDX58839.1| transcriptional regulatory protein VanRB [Bacillus cereus W] gi|218538575|gb|ACK90973.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus cereus AH820] Length = 220 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 5/160 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R R + P++ ++ + + FD+ DD V KP + +L RV A+ RR Sbjct: 63 ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + E L +E IL L+ N G+ ++ I S ++G + Sbjct: 123 VAKELHYGKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + + V +HI LR KL + + + + R +GY ++ Sbjct: 182 DFDGDGSTVHTHIKNLRAKLPDNI----IKTVRGVGYRLE 217 >gi|219849054|ref|YP_002463487.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543313|gb|ACL25051.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 247 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 6/140 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA S VP++ I+ + F G D+ + KP E +ARV AI RR+ + R Sbjct: 86 IRAKSDVPIVIITARDGTDDIVQGFRRGADEYITKPFRVAEFVARVEAILRRVDMQKART 145 Query: 127 -----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + V+G L E +L +L AN G+ + +F ++G + Sbjct: 146 APPLVHVGDLVIDATAHKVSVRGAEVKLTPMEFELLYFLAANAGQVFTREVLFREVWG-Y 204 Query: 182 DEAVEENVVESHISKLRKKL 201 + E N+V+ + +LR+K+ Sbjct: 205 EYIGETNLVDVCVRRLREKV 224 >gi|89897137|ref|YP_520624.1| hypothetical protein DSY4391 [Desulfitobacterium hafniense Y51] gi|89336585|dbj|BAE86180.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 237 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 87/182 (47%), Gaps = 8/182 (4%) Query: 27 EGFNSLEFEEW---LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + ++ L + RE+ + ++ G+ L L R +RA +P+I ++ Sbjct: 27 EGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLSLCRRLRAVRMIPIIMLTAKGE 86 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VSNNRAETGPIRVFSDGRD 139 + + G DD V KP RE++AR+ A+ RR + +N + + + + +D R Sbjct: 87 EADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAADPATNWQLKYPGLEIRADIRK 146 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 V + RE +L +L N + + ++ A++G +D ++ V+ HI +LR Sbjct: 147 VLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAVWG-YDYFGDQRTVDVHIRRLRT 205 Query: 200 KL 201 KL Sbjct: 206 KL 207 >gi|115360068|ref|YP_777206.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285356|gb|ABI90872.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 221 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 95/182 (52%), Gaps = 11/182 (6%) Query: 43 REDVSAIEAFLIG-KGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100 R D+ ++A L G G VL R +RA S P++ ++ ++ + G DD + Sbjct: 44 RFDLVVLDANLPGLDGFTVL---RNLRASGSTTPVLLVTARSAIDDRVSGLGFGADDYLV 100 Query: 101 KPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159 KP +RE+ ARV A+ RR N T G + + R E+ G+ L R+E +LE Sbjct: 101 KPFDYRELEARVQALLRRNSGHANDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLE- 159 Query: 160 LMANRGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++A+R +R+ +K ++ + ++ +E N VE +++++R+KL+ + + R +GY Sbjct: 160 ILASRPQRIFSKDELLNQLFSFGNEP-SANAVEQYVTRVRRKLQGS--SVEIRTARGMGY 216 Query: 219 SI 220 I Sbjct: 217 QI 218 >gi|219667004|ref|YP_002457439.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537264|gb|ACL19003.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 237 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 87/182 (47%), Gaps = 8/182 (4%) Query: 27 EGFNSLEFEEW---LQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF + ++ L + RE+ + ++ G+ L L R +RA +P+I ++ Sbjct: 27 EGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLSLCRRLRAVRMIPIIMLTAKGE 86 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VSNNRAETGPIRVFSDGRD 139 + + G DD V KP RE++AR+ A+ RR + +N + + + + +D R Sbjct: 87 EADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAADPATNWQLKYPGLEIRADIRK 146 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 V + RE +L +L N + + ++ A++G +D ++ V+ HI +LR Sbjct: 147 VLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAVWG-YDYFGDQRTVDVHIRRLRT 205 Query: 200 KL 201 KL Sbjct: 206 KL 207 >gi|94312862|ref|YP_586071.1| DNA-binding response regulator [Cupriavidus metallidurans CH34] gi|93356714|gb|ABF10802.1| DNA-binding response regulator in two-component regulatory system [Cupriavidus metallidurans CH34] Length = 223 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 4/202 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + I GD G ++ E + ++A D+ ++ L GK + L Sbjct: 3 LLLVEDHPDLAALVIKSLGDSGFVIDHAVDGEAALLMIATASYDLILLDLSL-GKVDG-L 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R IR P++ ++ + + D G DD + KP E+ AR+ A RR + Sbjct: 61 DVLRSIRTQGVTTPVLILTARSEIADRILGLDLGADDYIAKPFDLGELEARIKAQLRRRQ 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + S R +G L RRE +LE L G+ + +F ++ + Sbjct: 121 GGQPVTTYGGLSFDSVERSFYCEGTALTLSRRELAVLEALFLRAGRVATRDVLFQCVFSI 180 Query: 181 FDEAVEENVVESHISKLRKKLR 202 DE V +E ++S++RKKL+ Sbjct: 181 DDE-VNPETIELYVSRVRKKLK 201 >gi|308071608|ref|YP_003873213.1| transcriptional regulatory protein yycF [Paenibacillus polymyxa E681] gi|305860887|gb|ADM72675.1| Transcriptional regulatory protein yycF [Paenibacillus polymyxa E681] Length = 243 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 98/225 (43%), Gaps = 26/225 (11%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY + DG++ + + ++ I L+ G +++ R +R Sbjct: 22 LEKEGYQVICAFDGIT-----------AVDIAVKQQPDLILLDLMLPGMDGMDVCREVRG 70 Query: 70 HS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-----VSN 123 H Q P+I ++ + + G DD V KP RE+LARV A RR + S Sbjct: 71 HQLQTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQQRGGASASE 130 Query: 124 NRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +R + G + +D G L RE +L Y+ N GK + + + A Sbjct: 131 SRPQEDKQGLRVGDLFFDTDMYTAYKNGTPLDLTHREYELLHYMAKNAGKVMTREHLLQA 190 Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++G F+ + V+ I +LR+K+ N + + ++R LGY + Sbjct: 191 VWG-FEYYGDVRTVDVTIRRLREKIEENPSKPETILTRRGLGYIV 234 >gi|289424081|ref|ZP_06425867.1| transcriptional regulatory protein ResD [Peptostreptococcus anaerobius 653-L] gi|289155506|gb|EFD04185.1| transcriptional regulatory protein ResD [Peptostreptococcus anaerobius 653-L] Length = 224 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 15/146 (10%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 ++IR S+VP+I +S + L ++ G DD + KP ++ +V A+ +R Sbjct: 68 KMIRNTSKVPIIFMSALNAENDQLKGYELGCDDYITKPFSFNLLVKKVEAVLKR------ 121 Query: 125 RAETGPIR--VFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +ET P VF D + G L +E IL+ L+ + + + + Sbjct: 122 TSETSPTNSIVFDKMHLDLDTYSISIDGNTVELTLKEFNILKTLIEKYPQIITRESLLDQ 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR 202 I+G +D + +V++HI +RKKL+ Sbjct: 182 IWG-YDYYGDTRIVDAHIKNIRKKLK 206 >gi|282883260|ref|ZP_06291858.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus lacrimalis 315-B] gi|300814336|ref|ZP_07094608.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281296890|gb|EFA89388.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus lacrimalis 315-B] gi|300511603|gb|EFK38831.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 226 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 6/133 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR---AETGPIRVFSDGRDPEVQGEVF 147 D G DD + KP E+L+RV AI RR +N+ + I + + R + +V Sbjct: 93 LDLGADDYIKKPFSVMELLSRVGAIERRANTTNSNEKFIKFNGIVIDNLKRLVTIDEKVV 152 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 +E +L+YL+ N+ +++ ++ + I+G +D E V+ HI LR KL +K + Sbjct: 153 NFTFKEYELLKYLILNKDIVISREKLLTYIWG-YDYEGETRTVDMHIKLLRDKLGDKRKY 211 Query: 208 DPVDSKRFLGYSI 220 + + R +GY + Sbjct: 212 --IKTIRGVGYML 222 >gi|229522924|ref|ZP_04412338.1| transcriptional regulator [Vibrio cholerae TM 11079-80] gi|229340141|gb|EEO05149.1| transcriptional regulator [Vibrio cholerae TM 11079-80] Length = 224 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 18/170 (10%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L L + IRA +QV ++ +S ++ + +G DD + KP H E+LAR+ A+ RR Sbjct: 60 LTLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRN 119 Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 L+ ++ +RV+ + E L +E ILE + G ++ Sbjct: 120 IQTHTSNKLRFADLELCLSTMRVYRADQPIE-------LTAKEISILELFLRKPGHIFSR 172 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +I + ++G+ + + NVV+ ++ +LRKK+ + +KR +GY + Sbjct: 173 ERILANVWGIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221 >gi|229175570|ref|ZP_04303080.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|228607966|gb|EEK65278.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172 KV+ N++ E G + + + R V GE L +E IL YL+A+ K+V + Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDIL-YLLASHPKKVYNVEN 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 IF ++ D+ E N V HI LRKKL Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210 >gi|218134085|ref|ZP_03462889.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC 43243] gi|217991460|gb|EEC57466.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC 43243] Length = 240 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 18/177 (10%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R S +P+I ++ ++ + D+G DD + KP E+LAR+ ++ Sbjct: 62 LEVLRRLRRTSNLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRRALKKSS 121 Query: 121 VSNNRAETG---------PIRVFSDGRDP--------EVQGEVFPLPRRERRILEYLMAN 163 +++ G + DGR V L +RE +L+ L+ N Sbjct: 122 MADGAGTDGRSADDVKEAAVLANGDGRVKLDKKQHIVTVDCNNVELTQREFAMLQTLLEN 181 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ + + G +D E N+V+ ++ LR K+ + G + + R +GY I Sbjct: 182 MDIVLSRETLLDKVCG-YDYVGETNIVDVYVRYLRSKIDDAFGIKLIQTVRGVGYVI 237 >gi|149377595|ref|ZP_01895334.1| response regulator receiver domain protein (CheY-like) [Marinobacter algicola DG893] gi|149358137|gb|EDM46620.1| response regulator receiver domain protein (CheY-like) [Marinobacter algicola DG893] Length = 233 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 VLI+D +++ Y F G + + + +A D++ I+ L + E Sbjct: 5 IVLIEDEPAIRENYRDAFERRGYRVSAYGDRTSAFQVLRTALPDLAIIDVGLGDEPEGGF 64 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 L + +R+ S+ +P+I ++ S ++ G DD V K + +LARV A+ RR Sbjct: 65 TLCQDLRSLSKTLPIIFLTARDSDIDSVHGLRLGADDYVTKDMSMDHLLARVTALLRRAD 124 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 LK + G + + D E G+ L E +L L+ + G ++ Q+ Sbjct: 125 AWAEALKQPDEVVHRGRLALNVDRMTAEWNGQPIDLTVTEFWMLHSLVQHPGHVRSRDQL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223 A + D +N V SHI ++R+K L+ FD + + +GY WN Sbjct: 185 MEAASTVLD----DNTVTSHIKRIRRKFLQIDDAFDGIHTAYGMGYR--WN 229 >gi|147678166|ref|YP_001212381.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146274263|dbj|BAF60012.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 239 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 25/223 (11%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR- 68 L ++GY L +L+G LE L + R D+ ++ L G LE+ R + Sbjct: 21 LEREGYQVL-----TALDGPQGLE----LARAERPDLIVLDVML--PGMNGLEVCREMHR 69 Query: 69 --AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 A +P+I +S + + G DD + KP RE++AR+ A RR++ Sbjct: 70 DAATKNIPVIMLSARAEELDRVLGLEMGADDYITKPFSPRELVARIKARLRRIQKEEGRE 129 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V R + G + + + V G L +E +L +L G+ ++ Q+ + Sbjct: 130 REAVPGGRLDFGRLVIDEEKFAVYVDGVKVDLTPKEFELLRFLARQPGRVFSREQLLEQV 189 Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219 +G +D A + V+ HI +R+KL R P+++ R +GY Sbjct: 190 WG-YDYAGDSRTVDVHIRHIRQKLGRLSESDQPIETVRGVGYC 231 >gi|52140648|ref|YP_086180.1| DNA-binding response regulator [Bacillus cereus E33L] gi|229199022|ref|ZP_04325708.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1293] gi|51974117|gb|AAU15667.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228584488|gb|EEK42620.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1293] gi|324328753|gb|ADY24013.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172 KV+ N++ E G + + + R V GE L +E IL YL+A+ K+V + Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDIL-YLLASHPKKVYNVEN 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 IF ++ D+ E N V HI LRKKL Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210 >gi|157158031|ref|YP_001464487.1| DNA-binding transcriptional regulator QseB [Escherichia coli E24377A] gi|157080061|gb|ABV19769.1| transcriptional regulatory protein QseB [Escherichia coli E24377A] Length = 215 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 15/222 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D L+ DG G S++ F + SA D ++ L G G + Sbjct: 3 ILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDI 62 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R R Q P++ ++ +L+ ++ G DD + KP L + A+ RR Sbjct: 63 L---REWREKGQREPVLILTARDALEERVEGLRLGADDYLCKPF----ALIGLEALMRRT 115 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N G + + R + GE L +E +LE LM N G+ + + I +Y Sbjct: 116 NGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 175 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE H+ LR+ KLG D + + +GY++ Sbjct: 176 -TWDEEVTSNAVEVHVHHLRR----KLGSDFIRTVHGIGYTL 212 >gi|330966499|gb|EGH66759.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 220 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 24/218 (11%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL +GY + +DG+S ++L E + + ++ F +L R +R Sbjct: 19 ALNTEGYTLDWLEDGLS--ALHALRSEPFDLLLLDLGLPRMDGF---------DLLRQLR 67 Query: 69 AHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 A +P++ ++ + D+G DD + KP E+ ARV A+ RR S RA Sbjct: 68 AEELALPVLILTARDGTADRIAGLDAGADDYLIKPFDVDELKARVRALLRR---SRGRAQ 124 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E I + + QG + E ++L LM GK V + ++ + +YG + + Sbjct: 125 PLLEHAGISLDPASQQVSFQGSEVLMTPMEYQLLHQLMIRPGKVVTRERLSNTLYG-WQD 183 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE N +E I LRKKL +L + + R +GY ++ Sbjct: 184 KVESNTLEVLIHNLRKKLSTEL----IRTVRGVGYLLE 217 >gi|331085996|ref|ZP_08335079.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406919|gb|EGG86424.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 224 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 81/166 (48%), Gaps = 16/166 (9%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L I + + VP++ ++ S++ + D+G +D + KP E+LAR+ + RR + S Sbjct: 63 LREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRRPEKS 122 Query: 123 NNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +VF DG++ ++ G+ F L R Y++ N+G +++ ++ Sbjct: 123 EDSCYREGGLEVHVDTHQVFRDGKEIQLSGKEFALLR-------YMIQNKGIVLSREKLE 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D A NV++ +I LRKK+ + + R GY + Sbjct: 176 QHLWN-YDYAGGSNVIDVYIRYLRKKIDESFKEKLIHTVRGAGYVL 220 >gi|329941681|ref|ZP_08290946.1| putative two-component systen response regulator [Streptomyces griseoaurantiacus M045] gi|329299398|gb|EGG43298.1| putative two-component systen response regulator [Streptomyces griseoaurantiacus M045] Length = 223 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 77/150 (51%), Gaps = 8/150 (5%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 + P++ ++ ++ +D D+G DD + KP E+ AR+ A+ RR + + G Sbjct: 78 RTPVLMLTGMGAVNDRIDGLDAGADDYLVKPFDLDELSARLRALCRRAHDTADVLSIGSG 137 Query: 132 RVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 R+F R+ E+ GE PL RE +L L ++ +++ Q+ + F EA ++V Sbjct: 138 RLFVGRREVELADGEQVPLAAREFALLWVLASHPDAVLSRAQLRRLV---FQEAPASSIV 194 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++++ LR+KL K+ V + R GY + Sbjct: 195 DTYVYYLRRKLGRKV----VRTVRGAGYRL 220 >gi|317490055|ref|ZP_07948545.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316910846|gb|EFV32465.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 243 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 98/243 (40%), Gaps = 32/243 (13%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 V+I+D A + + +G + + F+ E L S D+ + L G GE Sbjct: 7 IVIIEDDADINEVVAVHLRRNGFACTQAFSGSEGRLLLSGSEPFDLVITDLMLPGMAGED 66 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 V+ R++RA +P+I +S + + G DD + KP E+LARV R Sbjct: 67 VV---RLVRARGDMPVIVMSARTTAADKVALLKLGADDYLTKPFDLDELLARVQVQLRHA 123 Query: 120 KVSNNRAETGPIRVFSDGRDPE----------------------VQGEVFPLPRRERRIL 157 V A P SD R PE V+ E L R E IL Sbjct: 124 DVRRASASGAP----SDERLPEPAAATAMRYKDWTLDVDARTLSVREEPVRLTRLEFNIL 179 Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217 E L+ K K ++F + + AVEE + H+S +R KLR +++ +G Sbjct: 180 EALVRRPRKVFTKRELFEIAWN-EESAVEEKAINVHVSNIRSKLRAAHSAGEIETVWGIG 238 Query: 218 YSI 220 + + Sbjct: 239 FKL 241 >gi|289705357|ref|ZP_06501753.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289557872|gb|EFD51167.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 254 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/228 (26%), Positives = 112/228 (49%), Gaps = 20/228 (8%) Query: 3 VLIDDRALVKD----GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-G 57 +++DD ++ D G+ + V+ +G ++E L ++ R D++ ++ L G Sbjct: 34 LVVDDEPMIADLLSMGFTLCGWEVIVAHDGATAVE----LGAAGRPDLAILDVMLPDMDG 89 Query: 58 EKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 VLE +RAH S++P + ++ + + + +G DD V KP E+L R + Sbjct: 90 LDVLER---LRAHWSEMPAMFLTAKDATEDRVAGLAAGGDDYVTKPFSMEEVLIRAHRLV 146 Query: 117 RRLKVSNNRAETGPI-RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +R V + +E + + + R EV G+ L + +L++LMAN ++K +I Sbjct: 147 QRSGVVSGGSEVLVVGDLVMNTRTHEVTRGGDEIELTATQYNLLKFLMANVRTVLSKERI 206 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 ++G +D N+VE +IS LRKK+ DP + + R GY I Sbjct: 207 LQDVWG-YDFGGRANIVELYISYLRKKIDAD--RDPMIHTVRGAGYVI 251 >gi|295688435|ref|YP_003592128.1| winged helix family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430338|gb|ADG09510.1| two component transcriptional regulator, winged helix family [Caulobacter segnis ATCC 21756] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 16/169 (9%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VLE R R + P++ ++ + + FD+G DD + KP H E+LAR+ A+ Sbjct: 59 GVSVLE--RWRRGNIATPVLILTARGAWSDKVAGFDAGADDYLAKPFHTEELLARLRALL 116 Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + S A G +R+ V GE L E R+L Y+M ++G+ + +T+ Sbjct: 117 ---RRSAGHAAPSLSCGALRLDPRAARASVNGEPLRLTSLEYRLLHYMMMHQGRVIGRTE 173 Query: 173 IFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +Y FD + N +E I +LRK KLG + +++ R LGY + Sbjct: 174 LVEHLYDQDFDR--DSNTIEVFIGRLRK----KLGAERIETVRGLGYRL 216 >gi|168182605|ref|ZP_02617269.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Bf] gi|170761342|ref|YP_001787844.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|237795967|ref|YP_002863519.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|169408331|gb|ACA56742.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|182674265|gb|EDT86226.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Bf] gi|229260789|gb|ACQ51822.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 232 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 4/113 (3%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150 G DD + KP RE++ARV A+ RR N +++ G I V + GE L Sbjct: 99 GADDYITKPFSVREMVARVKAVLRRRTTINIESKSYILGNIVVDFEKHSLTKAGEKIELT 158 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 +E +LE L+ N+GK + + + I+G ++ E V+ HI LRKK+ + Sbjct: 159 LKEFELLEVLIKNKGKVMTRDFLLDRIWG-YEYIGETRTVDVHIRHLRKKIED 210 >gi|167839646|ref|ZP_02466330.1| DNA-binding response regulator IrlR [Burkholderia thailandensis MSMB43] Length = 229 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 17/217 (7%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66 + L + G++A + +DGV+ G + E EE+ D+ ++ L G G VLE Sbjct: 18 KGLTEAGFVADWVEDGVT--GLHQAETEEY-------DLIILDVMLPGHDGWTVLER--- 65 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R P++ ++ + + + G DD V KP E++ARV +I RR + + Sbjct: 66 LRRERSTPVLFLTASDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQARESTV 125 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 + + R QG+V L +E +L LM G+ + + I S ++ + F+ Sbjct: 126 LRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDMNFNS- 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVV++ I +LR K+ + + + R +GY ++ Sbjct: 185 -DTNVVDAAIRRLRAKIDDAYEPKLIHTVRGMGYVLE 220 >gi|254284870|ref|ZP_04959836.1| transcriptional regulator [Vibrio cholerae AM-19226] gi|150424873|gb|EDN16650.1| transcriptional regulator [Vibrio cholerae AM-19226] Length = 224 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 18/170 (10%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L L + IRA +QV ++ +S ++ + +G DD + KP H E+LAR+ A+ RR Sbjct: 60 LTLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRN 119 Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 L+ ++ +RV+ + E L +E ILE + G ++ Sbjct: 120 IQTHTCNKLRFADLELCLSTMRVYRADQPIE-------LTAKEISILELFLRKPGHIFSR 172 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +I + ++G+ + + NVV+ ++ +LRKK+ + +KR +GY + Sbjct: 173 ERILANVWGIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221 >gi|83749289|ref|ZP_00946288.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551] gi|207725205|ref|YP_002255601.1| two-component system response regulator protein [Ralstonia solanacearum MolK2] gi|207743580|ref|YP_002259972.1| two-component system response regulator protein [Ralstonia solanacearum IPO1609] gi|83724070|gb|EAP71249.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551] gi|206590439|emb|CAQ37401.1| two-component system response regulator protein [Ralstonia solanacearum MolK2] gi|206594979|emb|CAQ61906.1| two-component system response regulator protein [Ralstonia solanacearum IPO1609] Length = 237 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 55/113 (48%), Gaps = 5/113 (4%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFP 148 +G DD V KP+ E++ARV A+ RR+ S R GP V GR + G Sbjct: 96 AGADDYVVKPVRRAELVARVGALLRRVAPRTGESLERMRVGPYGVDPLGRVLTLHGSQVE 155 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L RE + YL N GK V + I A++G + + +HISKLR KL Sbjct: 156 LSPREFDLALYLFRNVGKLVPRELIEQAVWG-RSIGPDSRTLATHISKLRLKL 207 >gi|46143552|ref|ZP_00204506.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208535|ref|YP_001053760.1| transcriptional regulatory protein QseB [Actinobacillus pleuropneumoniae L20] gi|190150390|ref|YP_001968915.1| QseB family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250189|ref|ZP_07336391.1| transcriptional regulatory protein QseB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253361|ref|ZP_07339510.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|126097327|gb|ABN74155.1| transcriptional regulatory protein QseB [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915521|gb|ACE61773.1| transcriptional regulatory protein QseB [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648043|gb|EFL78250.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302651252|gb|EFL81406.1| transcriptional regulatory protein QseB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 221 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 6/149 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVSNNRAETGPI 131 +P++ ++ +L + F+SG DD + KP E++ R+ A I RR K S+ G + Sbjct: 73 IPVLILTARDTLDERILGFNSGADDYLCKPFALMEVVVRLQALIRRRYKQSSTEITLGDL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + S + + L +E ++L +N+ + + ++ I +Y +D V N +E Sbjct: 133 TIDSSTHKVTLADKEINLTSKEFQLLLLFASNKDRVLTRSAIEEKLYS-WDNDVSSNAME 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +I LRK KLG + + + +GY I Sbjct: 192 VYIHNLRK----KLGKEWIKTVHGIGYKI 216 >gi|326389588|ref|ZP_08211154.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325994303|gb|EGD52729.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 5/143 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---- 120 R IR S +P+I ++ + + G DD + KP + RE++AR+ A+ RR Sbjct: 65 REIRTFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLRRATNPYI 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + R +G+ L +E IL L +N GK K ++ I+G Sbjct: 125 KRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLIWG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRN 203 FD + N V H+ KLR+K+ + Sbjct: 184 FDFYGDTNTVTVHVRKLREKIED 206 >gi|325963065|ref|YP_004240971.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] gi|323469152|gb|ADX72837.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] Length = 246 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 83/163 (50%), Gaps = 7/163 (4%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101 R DV ++ L G +EL IRA + +VP + ++ ++Q + +G DD V K Sbjct: 65 RPDVLVLDVML--PGFDGVELLGRIRAFAPEVPALFLTAKDAIQDRIVGLAAGGDDYVTK 122 Query: 102 PIHHREILARVAAIYRRLKVSN-NRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 P E+L R+ + +R V+ + AE G + + D R+ G+ L + +L Sbjct: 123 PFSMEEVLLRLHRLVQRSGVAAMDTAELVVGDLVLNVDTREVTRAGQDVQLTATQFELLR 182 Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 YLM N + ++K QI ++ +D + N+VE +IS LRKK+ Sbjct: 183 YLMENPKRVISKAQILDRVWN-YDFGGQANIVELYISYLRKKI 224 >gi|310826825|ref|YP_003959182.1| DNA-binding response regulator [Eubacterium limosum KIST612] gi|308738559|gb|ADO36219.1| DNA-binding response regulator [Eubacterium limosum KIST612] Length = 231 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 8/165 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-K 120 ++ R +R HS+VP+I ++ + D G DD + KP + E+++R+ A+ RR K Sbjct: 64 DICRSVRRHSEVPIIFLTASDEEVNVVMGLDIGGDDYITKPFNLGELVSRIKALLRRARK 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + E+ I V G+ L E+R+L + N G +++ I ++ Sbjct: 124 LRSPILESHGIAVDLMKGSATKNGQSLELTAAEQRLLIMFLQNPGMILSRNSILERLWDS 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL---GYSIDW 222 + V++N + +I +LR K+ + DP R L G W Sbjct: 184 PSDFVDDNTLSVYIRRLRSKIED----DPNHPARLLTVRGMGYKW 224 >gi|300869112|ref|ZP_07113711.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300332881|emb|CBN58907.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 247 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 12/147 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S VP+I ++ + + + G DD V KP +E+ AR+ ++ RR V N A Sbjct: 75 LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR--VDKNGA 132 Query: 127 ETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 P IR+ ++ R E L E +LE L++ G+ ++++I + Sbjct: 133 SGIPSSGVIHVTNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEV 192 Query: 178 YGLFDE-AVEENVVESHISKLRKKLRN 203 +G E V+ VV+ HIS+LR KL + Sbjct: 193 WGYTPERHVDTRVVDVHISRLRAKLED 219 >gi|260777352|ref|ZP_05886246.1| two-component response regulator CreB [Vibrio coralliilyticus ATCC BAA-450] gi|260607018|gb|EEX33292.1| two-component response regulator CreB [Vibrio coralliilyticus ATCC BAA-450] Length = 229 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 95/222 (42%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V+I+D + D I + DG F++ E +++ S + G G Sbjct: 8 VIIEDEPAIADNLIHVLEMDGYQPAWFSTAGEGLTFMKQSEPALLVLDVGLPDGNG---F 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IR S VP+I ++ + + G DD V KP RE+LAR+ + Sbjct: 65 ELCKTIREFSDVPIIFLTARNDEIDRVVGLEIGADDYVTKPFSPREMLARIKLRIKSRPT 124 Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + A I + +D D V G+ L E +IL L+A +++ Q+ A Sbjct: 125 TIQSANEQAIEDDLKADNFDYSVDGQPLGLTAVEFKILNRLIAVSSSVLSREQLMLAA-D 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + A E ++SHI +R KL+ D + +KR GY D Sbjct: 184 MTPHASYERNIDSHIKAIRNKLKPFSMADRICTKRGFGYYFD 225 >gi|239918315|ref|YP_002957873.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281415488|ref|ZP_06247230.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839522|gb|ACS31319.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 239 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 20/171 (11%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +RA S+ ++ ++ L+ G DD + KP RE++ARV A+ RR + Sbjct: 75 IEVCRRVRAFSECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPR 134 Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + E P RV D + V G+V L R E +L L + ++ Q+ Sbjct: 135 TTVSAPE--PERVCGDLVIDLAAHEARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLI 192 Query: 175 SAIYGLFDEAV--EENVVESHISKLRKKLRNKLGFDP---VDSKRFLGYSI 220 ++ D A +E +V+ HI K LR KL +P +D+ R +GY + Sbjct: 193 DIVW---DPAWVGDERLVDVHI----KNLRRKLDANPARYIDTVRGVGYRM 236 >gi|256397300|ref|YP_003118864.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363526|gb|ACU77023.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 249 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 18/167 (10%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 DV +E ++ + +VL R +R Q P+I ++ + L D+G+DD V +P Sbjct: 44 DVVLLECGIVDR--EVLAFCRRLRTELQAPIIAVTHRVDMGAWLRGHDNGIDDYVVQPFG 101 Query: 105 HREILARVAAIYRRLKVSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRER 154 +E+ AR+ RL V+ R GP+ V D R V G+ L +E Sbjct: 102 LQELAARL-----RLAVAPPRPPLTPGPPRRIVAGPLVVAEDSRTVTVHGQRVALRPKEY 156 Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++L L G +A+ Q+ S ++ + E + +E HI+ LR KL Sbjct: 157 QLLVVLARQAGTVLARDQLISRLWPAGWDGAERS-LEVHIASLRSKL 202 >gi|261342626|ref|ZP_05970484.1| QseB protein [Enterobacter cancerogenus ATCC 35316] gi|288315274|gb|EFC54212.1| QseB protein [Enterobacter cancerogenus ATCC 35316] Length = 220 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/221 (23%), Positives = 103/221 (46%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+++G ++G +L+ + + L S + ++ L K L Sbjct: 3 LLIVEDDLLLQEGLALALANEGYALDCAATAAEADALIQSGEYSLVILDLGLPDKDGATL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L + R + P++ ++ +++ ++ DSG DD + KP E+ ARV A+ RR + Sbjct: 63 -LSQWRRRGVENPVLILTARDAIEDRINGLDSGADDYLVKPFALAELQARVRALIRRYQG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S+N G I + + Q + + +E +L L+ G+ V + + IY Sbjct: 122 HSDNLLTDGDITLNLQTQQVLRQSQPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYSW 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D+ N +E HI LR+ KLG D + + R +GY ++ Sbjct: 182 QDDP-GSNTLEVHIHNLRR----KLGKDRIKTVRGVGYRLE 217 >gi|196228091|ref|ZP_03126958.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196227494|gb|EDY21997.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 226 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 7/159 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ A +QVP++ +S + G DD + KP E+LAR+ A RR+ +N Sbjct: 65 RVRAADAQVPVLFLSAKSEEIDVVVGLQLGADDFIRKPFGKHELLARIRAALRRVHARSN 124 Query: 125 RAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + V+ E G L RE ILE L G+ V + + + +G+ Sbjct: 125 GVRSFAMHDLVVYPRELRAERAGATIDLSPREAGILELLHEKTGQVVDRDTLLNRCWGM- 183 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGY 218 D E ++ HI+KLRK++ G +P +++ R +GY Sbjct: 184 DYFPESRTLDQHIAKLRKRIEPDPG-NPTIIETVRGVGY 221 >gi|239918670|ref|YP_002958228.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281415113|ref|ZP_06246855.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839877|gb|ACS31674.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 254 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 104/208 (50%), Gaps = 17/208 (8%) Query: 3 VLIDDRALVKD----GYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-G 57 +++DD ++ D G+ + V+ +G ++E L ++ R D++ ++ L G Sbjct: 34 LVVDDEPMIADLLSMGFTLCGWEVIVAHDGATAVE----LGTAGRPDLAILDVMLPDMDG 89 Query: 58 EKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 VLE +RAH S++P + ++ + + + +G DD V KP E+L R + Sbjct: 90 LDVLER---LRAHWSEMPAMFLTAKDATEDRVAGLAAGGDDYVTKPFSMEEVLIRAHRLV 146 Query: 117 RRLKVSNNRAETGPI-RVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +R V + +E + + + R EV G+ L + +L++LMAN ++K +I Sbjct: 147 QRSGVVSGGSEVLVVGDLVMNTRTHEVTRGGDEIELTATQYNLLKFLMANVRTVLSKERI 206 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G +D N+VE +IS LRKK+ Sbjct: 207 LQDVWG-YDFGGRANIVELYISYLRKKI 233 >gi|168179997|ref|ZP_02614661.1| cell cycle transcriptional regulator CtrA [Clostridium botulinum NCTC 2916] gi|182668954|gb|EDT80930.1| cell cycle transcriptional regulator CtrA [Clostridium botulinum NCTC 2916] Length = 223 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ +R+ S + P+I I+ ++ D+G DD + KP E+ AR+ AI RR Sbjct: 60 IEILNYLRSESIETPVIIITARDEVEQLAFGLDNGADDYITKPFKLLELRARIHAIIRRF 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +N G +++ R E++ + L +E ILEY+ V+ +I IY Sbjct: 120 HGRTNPIINIGKLQLNPITRTVEIENKPVALVSKEFDILEYICYRHPAVVSSEEIAEHIY 179 Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + +V+ HI++L+KKL N G + + + R GY Sbjct: 180 ---DENFDPFSSVLRVHIARLKKKLSNASGKEILINIRGKGY 218 >gi|157736695|ref|YP_001489378.1| two-component response regulator [Arcobacter butzleri RM4018] gi|157698549|gb|ABV66709.1| two-component response regulator [Arcobacter butzleri RM4018] Length = 225 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/217 (22%), Positives = 99/217 (45%), Gaps = 19/217 (8%) Query: 8 RALVKDGYIALF---GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 + L ++ YI F GD+G+ L N+ D+ ++ L K +E+ Sbjct: 21 KGLEEECYIVDFSTNGDEGLYLASINTY------------DLILLDIMLPVKNG--IEVC 66 Query: 65 RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 + +R+ + Q P+I ++ S++ + D G +D + KP E+LAR+ R + Sbjct: 67 KSLRSSNIQTPIIMLTAKDSIEDKIKGLDIGANDYLAKPFSFAELLARIRVQLRITTTTQ 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + + + + L +E +LEYL+ N+ + +++T I A+ F++ Sbjct: 127 TKLSIADLELDLLNKTASRSNQNIVLTAKEFSLLEYLIKNKNRVLSETTINEALSS-FED 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+V +I +LR K+ + + R +G+ I Sbjct: 186 SNISNIVNVYIYRLRNKIDKNFENKLIKTVRGIGFKI 222 >gi|154499723|ref|ZP_02037761.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC 29799] gi|150271321|gb|EDM98578.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC 29799] Length = 227 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 5/141 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R+ S +P+I ++ + + D G DD + KP E+L+R+ A+ RR + ++A Sbjct: 67 VRSSSTIPIIFLTASDQEISIVKGLDMGGDDYITKPFKLNELLSRIKALLRR-SLQFSKA 125 Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ET IRV ++ R GE LP E ++L M N + + I ++ Sbjct: 126 ETILEANGIRVDTNERLVWKNGEPVDLPLVEYKLLCLFMKNPNHLMPREMILDRMWDGNG 185 Query: 183 EAVEENVVESHISKLRKKLRN 203 V++N + +I +LR K+ + Sbjct: 186 NFVDDNTLSVYIRRLRNKIED 206 >gi|187476532|ref|YP_784556.1| two-component response regulator [Bordetella avium 197N] gi|115421118|emb|CAJ47602.1| probable two-component response regulator [Bordetella avium 197N] Length = 239 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 79/155 (50%), Gaps = 8/155 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS----NNRAET 128 +P+I ++ + ++ ++G DD + KP+ E+LARVAA+ RR + + N + Sbjct: 78 LPIIFLTSRNQEEDLVEGLNAGADDYIVKPLRAAELLARVAALLRRTQATASLENPAFDL 137 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 GP V R E+ GE PL +E + + N G+ +++ + +++ + Sbjct: 138 GPYHVDPARRVIELHGEAIPLAPKEYELALLFLRNIGRLLSRDLLAESVWN-REIPPTSR 196 Query: 189 VVESHISKLRKK--LRNKLGFDPVDSKRFLGYSID 221 +++H+S +R+K LR + G + S LGY ++ Sbjct: 197 TLDTHLSNIRQKLQLRPENGLR-LTSSYALGYRLE 230 >gi|87310230|ref|ZP_01092361.1| DNA-binding response regulator [Blastopirellula marina DSM 3645] gi|87286979|gb|EAQ78882.1| DNA-binding response regulator [Blastopirellula marina DSM 3645] Length = 234 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 7/190 (3%) Query: 35 EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDS 93 E+ L+ + + AI L+ G LE+ R +R PL+ ++ S+ + D Sbjct: 45 EKGLEYARTQQFDAILLDLMLPGIGGLEVVRTLRDEGIGTPLLILTALGSVDDRVQGLDH 104 Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRR 152 G DD + KP E+LAR+ A++RR E GP+ + R + L Sbjct: 105 GADDYMVKPFAFPELLARLNAMWRRASPRPALNYEAGPLALDLGSRKVTRSSKEIDLSPS 164 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--V 210 E ILE LM + G+ V++ + ++G D NV++ HI+ LR+K+ GFD + Sbjct: 165 EFSILELLMRHAGQIVSRKMLNEHLWGQ-DWNGMTNVIDVHINHLRQKVDR--GFDEPLI 221 Query: 211 DSKRFLGYSI 220 + R GY + Sbjct: 222 HTVRGRGYVL 231 >gi|134292766|ref|YP_001116502.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135923|gb|ABO57037.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 221 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 6/154 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A S P++ ++ ++ + G DD + KP +RE+ ARV A+ RR N T Sbjct: 69 AGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHANDVLT 128 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAVE 186 G + + R E+ G+ L R+E +LE ++A+R +R+ +K ++ + ++ +E Sbjct: 129 LGGLVIDRSSRLAELDGQPLSLSRQEFALLE-ILASRPQRIFSKDELLNQLFSFGNEP-S 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N VE +++++R+KL + + R +GY I Sbjct: 187 ANAVEQYVTRVRRKLHGS--SVEIRTARGMGYQI 218 >gi|30264605|ref|NP_846982.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530074|ref|YP_021423.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49187428|ref|YP_030680.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65321903|ref|ZP_00394862.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165871505|ref|ZP_02216152.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635564|ref|ZP_02393876.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167641577|ref|ZP_02399824.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688250|ref|ZP_02879460.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708682|ref|ZP_02899120.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177653111|ref|ZP_02935398.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566979|ref|ZP_03019895.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227817319|ref|YP_002817328.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229602420|ref|YP_002868816.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686972|ref|ZP_05150830.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724536|ref|ZP_05186319.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736642|ref|ZP_05194348.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741680|ref|ZP_05199367.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754723|ref|ZP_05206758.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254757555|ref|ZP_05209582.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259263|gb|AAP28468.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47505222|gb|AAT33898.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49181355|gb|AAT56731.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712802|gb|EDR18332.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510462|gb|EDR85861.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528984|gb|EDR91739.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126362|gb|EDS95251.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667756|gb|EDT18509.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172081635|gb|EDT66706.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561970|gb|EDV15939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227007249|gb|ACP16992.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229266828|gb|ACQ48465.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 230 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 7/149 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 LE+ RIIR S VP++ +S + G DD + KP E+ ARV A I R Sbjct: 62 LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K S I++ DP E G+ L +E IL+ + N+ + K QI+ Sbjct: 122 KYSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 + I+ + ++NV+ H+ +LR+K+ + Sbjct: 182 TLIWN-EEYYGDDNVINVHMRRLREKIES 209 >gi|25010196|ref|NP_734591.1| DNA-binding response regulator [Streptococcus agalactiae NEM316] gi|76786780|ref|YP_328847.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|77409199|ref|ZP_00785910.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77414552|ref|ZP_00790696.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|23094547|emb|CAD45766.1| Unknown [Streptococcus agalactiae NEM316] gi|76561837|gb|ABA44421.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|77159393|gb|EAO70560.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|77172207|gb|EAO75365.1| DNA-binding response regulator [Streptococcus agalactiae COH1] Length = 223 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/210 (23%), Positives = 104/210 (49%), Gaps = 13/210 (6%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L ++GY + +G E N L+ EE + ++ I ++ + + EL A Sbjct: 21 LTQEGYQFITASNGQ--EALNCLDTEE-----VQLIITDIMMPMMDGYQLIQELRS---A 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128 VP+I ++ ++ F G DD + KP+ +E+ R+ A+ RR V+ ++ Sbjct: 71 AYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALLRRANIVAQHQLII 130 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + D + + P++E R+L +L++ + + ++ +I+G+ D ++E Sbjct: 131 GNTCLNEDELSLKYFEQEIVFPQKEFRVLFHLLSYPNRIFTRLELLDSIWGM-DTDLDER 189 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VV++ I+K+R+K+ + F +++ R +GY Sbjct: 190 VVDACINKIRRKVEHLPDF-KIETVRGVGY 218 >gi|331000912|ref|ZP_08324549.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Parasutterella excrementihominis YIT 11859] gi|329569871|gb|EGG51628.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Parasutterella excrementihominis YIT 11859] Length = 235 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 11/150 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121 +R S VP+I +S T ++ F G DD V+KP + E++ R+ A+ RR K Sbjct: 71 LRKSSDVPVIILSAKDERPTVIEGFREGADDFVSKPFYIEELMERIRAVLRRGKTRSLVH 130 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G +R+ R V+ + L RE R+L L+ + G+ + ++ A++G Sbjct: 131 APQSQELICGALRLLPGPRQCYVKDALVKLTDREFRLLLELVKHPGEVMTHERLLRAVWG 190 Query: 180 LFDEAVEE-NVVESHISKLRKKLRNKLGFD 208 DE++ E + +++R+KL + G D Sbjct: 191 --DESIGEVQYLRVTFARIRRKL-EQCGLD 217 >gi|313889348|ref|ZP_07822996.1| putative response regulator protein GraR [Streptococcus pseudoporcinus SPIN 20026] gi|313122180|gb|EFR45271.1| putative response regulator protein GraR [Streptococcus pseudoporcinus SPIN 20026] Length = 221 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 4/153 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125 IR H P+I IS + + G DD + KP + A++ A RR + +N+ Sbjct: 69 IRKHVTTPIIFISSSNDEMDAVMALNMGGDDYITKPFSLTILDAKITAFLRRANQFANDS 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + DG + ++F P E +IL L+ N+ V+K ++ ++ D+ + Sbjct: 129 LSYKGYHLHFDGSLTKEDQKIFLSP-TEHKILSLLLTNQESVVSKEKLLRTLWE-SDQFI 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++N + ++++LRKKL + + F+ + + R +GY Sbjct: 187 DQNTLNVNMTRLRKKLSD-INFNYIHTVRGVGY 218 >gi|289663657|ref|ZP_06485238.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 238 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 31/195 (15%) Query: 51 AFLIGKGEKVL------------ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98 A L G+G +++ E+ R IR S VP+I ++ + D+G +D Sbjct: 48 ALLAGQGAELVVLDIGLPDRDGHEVLREIRQWSSVPVIMLTVRAGETEKVAALDAGANDY 107 Query: 99 VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLP 150 V KP +E++AR+ ++ R+ + E+ VF DG R+ + GE PL Sbjct: 108 VTKPFGVQELMARIRSLLRQAGAGSTVEES----VFDDGCLHIHLGLREVTLNGEAVPLS 163 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG---- 206 R+E +L L+ + G+ V + Q+ ++G E + + + + KLR+KL++ Sbjct: 164 RKEYALLALLLKHAGRVVTQPQLLREVWGPTHED-DTHYLRILVGKLRQKLQDDAAAPHY 222 Query: 207 --FDPVDSKRFLGYS 219 +P RF+G + Sbjct: 223 IVTEPGVGLRFIGVT 237 >gi|84625277|ref|YP_452649.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84369217|dbj|BAE70375.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 238 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 31/195 (15%) Query: 51 AFLIGKGEKVL------------ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98 A L G+G +++ E+ R IR S VP+I ++ + D+G +D Sbjct: 48 ALLAGQGAELVVLDIGLPDRDGHEMLREIRQWSNVPVIMLTVRAGETEKVAALDAGANDY 107 Query: 99 VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLP 150 V KP +E++AR+ + R+ + E+ VF DG R+ + GE PL Sbjct: 108 VTKPFGVQELMARIRVLLRQAGAGSTVEES----VFDDGRLHIHLGLREVTLNGEAVPLS 163 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG---- 206 R+E +L L+ + G+ V + Q+ ++G E + + + + KLR+KL++ Sbjct: 164 RKEYALLALLLKHAGRVVTQPQLLRELWGPTHEE-DTHYLRILVGKLRQKLQDDAAAPHY 222 Query: 207 --FDPVDSKRFLGYS 219 +P RF+G + Sbjct: 223 IVTEPGVGLRFIGVT 237 >gi|300697453|ref|YP_003748114.1| OmpR family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299074177|emb|CBJ53722.1| Transcriptional regulator of hrp gene cluster, OmpR family [Ralstonia solanacearum CFBP2957] Length = 245 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 5/115 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEV 146 F++GVDD++ E+ ARV + RR + A GP R+ R V Sbjct: 92 FEAGVDDLLTGHFTAEELRARVQRVLRRSEQPRQNASMHVVVGPYRLCRLTRTATVNDTP 151 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L RE L ++ G +++ QI SA++G D ++ E +E HI KLRKKL Sbjct: 152 IRLTAREFATAWLLFSSPGTFLSRQQIASAVWGA-DASIVERSIEQHIYKLRKKL 205 >gi|237749392|ref|ZP_04579872.1| two component transcriptional regulator [Oxalobacter formigenes OXCC13] gi|229380754|gb|EEO30845.1| two component transcriptional regulator [Oxalobacter formigenes OXCC13] Length = 230 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 11/141 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S +P+I +S S + D+G DD + KP E+LARV A RR + S N Sbjct: 70 LRNWSDIPVIVLSARNSEHDKISALDAGADDYLEKPFGAGELLARVRAQLRRQQRSGN-- 127 Query: 127 ETGPIRVFSD-GRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 P F+D DP E GE L E RIL +L + + V Q+ A++G Sbjct: 128 --DPTIRFADVCIDPVRRLVEKNGEPVHLTPIEYRILTFLASQPDRVVTHQQLLKAVWGP 185 Query: 181 FDEAVEENVVESHISKLRKKL 201 + + + H++ LRKK+ Sbjct: 186 -GHTEDMHYIRVHMANLRKKV 205 >gi|229081791|ref|ZP_04214283.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock4-2] gi|228701379|gb|EEL53873.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock4-2] Length = 230 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 7/149 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 LE+ RIIR S VP++ +S + G DD + KP E+ ARV A I R Sbjct: 62 LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K S I++ DP E G++ L +E IL+ + N+ + K QI+ Sbjct: 122 KYSATETIEKMIQIGDLTIDPINFTVEKNGKLLKLTLKEFEILKLFVKNQNRVFTKAQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++ + ++NV+ H+ +LR+K+ + Sbjct: 182 TLVWN-EEYYGDDNVINVHMRRLREKIES 209 >gi|222098001|ref|YP_002532058.1| response regulator [Bacillus cereus Q1] gi|228960804|ref|ZP_04122441.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pakistani str. T13001] gi|229147097|ref|ZP_04275456.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST24] gi|229186790|ref|ZP_04313946.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BGSC 6E1] gi|229198686|ref|ZP_04325386.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus m1293] gi|221242059|gb|ACM14769.1| response regulator [Bacillus cereus Q1] gi|228584795|gb|EEK42913.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus m1293] gi|228596683|gb|EEK54347.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BGSC 6E1] gi|228636346|gb|EEK92817.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST24] gi|228798889|gb|EEM45866.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pakistani str. T13001] Length = 230 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 7/149 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 LE+ RIIR S VP++ +S + G DD + KP E+ ARV A I R Sbjct: 62 LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K S I++ DP E G+ L +E IL+ + N+ + K QI+ Sbjct: 122 KYSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 + I+ + ++NV+ H+ +LR+K+ + Sbjct: 182 TLIWN-EEYYGDDNVINVHMRRLREKIES 209 >gi|270308699|ref|YP_003330757.1| DNA-binding response regulator [Dehalococcoides sp. VS] gi|270154591|gb|ACZ62429.1| DNA-binding response regulator [Dehalococcoides sp. VS] Length = 209 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 5/164 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ IR S VP+I ++ Q + ++G +D + KP E+LARV A R Sbjct: 45 LEVLEGIRLFSDVPVIILTVRSDEQDIVCSLETGANDYITKPFKQMELLARVKACLRGNT 104 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179 + N + GP + R G+ L E +L+ L+ + GK V+ +++ AI+ Sbjct: 105 SNRNIFKQGPFELNIIMRKVFYNGKWIALTPSETIVLQCLLRSIGKTVSYSELSHAIWKD 164 Query: 180 LFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221 +D A ++ ++ +I +R+KL NK + + + +GY+++ Sbjct: 165 EYDGA--KSTIKVYIKHIREKLEVCNKNTEELISAVVGVGYTLN 206 >gi|113868143|ref|YP_726632.1| response regulator [Ralstonia eutropha H16] gi|113526919|emb|CAJ93264.1| response regulator involved in heavy metal response, OmpR-family [Ralstonia eutropha H16] Length = 227 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 88/196 (44%), Gaps = 15/196 (7%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L ++GY+ +GV + L + E AI ++ + + + + Sbjct: 18 RGLSENGYVVDTAHNGV-----------DGLHLACTEPYDAIVLDVMLPALDGVSVLKSL 66 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRA 126 R Q P++ ++ L L+ FD+G DD ++KP E+LAR+ + RR + + ++ Sbjct: 67 RREQQTPVLMLTARDDLDDRLNAFDAGADDYLSKPFSFLELLARLNVLTRRGRQTEPSQL 126 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 G +R+ R L RE +L L + + V+KT I ++ + FD Sbjct: 127 TVGDLRIDLLSRRATRGTRRLELSAREFTLLSVLARRQAQIVSKTAITELVWDISFD--C 184 Query: 186 EENVVESHISKLRKKL 201 NVVE + +LR KL Sbjct: 185 NTNVVEVAVKRLRAKL 200 >gi|49481473|ref|YP_038587.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228929584|ref|ZP_04092602.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935846|ref|ZP_04098658.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948260|ref|ZP_04110543.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124101|ref|ZP_04253293.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus 95/8201] gi|49333029|gb|AAT63675.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228659403|gb|EEL15051.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus 95/8201] gi|228811247|gb|EEM57585.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823903|gb|EEM69723.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829971|gb|EEM75590.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 230 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/203 (27%), Positives = 94/203 (46%), Gaps = 18/203 (8%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66 ++ LVK+G+ DG EG N+ +L+ S D+ ++ + LE+ RI Sbjct: 19 EKYLVKEGFQVTIASDGE--EGVNT-----YLKGSF--DLIILDIMM--PKLDGLEVVRI 67 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSNNR 125 IR S VP++ +S + G DD + KP E+ ARV A I R K S Sbjct: 68 IREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTKYSATE 127 Query: 126 AETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 I++ DP E G+ L +E IL+ + N+ + K QI++ I+ Sbjct: 128 TTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYTLIWN- 186 Query: 181 FDEAVEENVVESHISKLRKKLRN 203 + ++NV+ H+ +LR+K+ + Sbjct: 187 EEYYGDDNVINVHMRRLREKIES 209 >gi|330944587|gb|EGH46541.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330954542|gb|EGH54802.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae Cit 7] Length = 222 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 102/227 (44%), Gaps = 24/227 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D +A G G +++ + + + A E I L G L Sbjct: 3 LLLVEDHVPLADELLAALGRQGYAVDWLA--DGRDAVHQGASEPYDLIVLDLGLPGMPGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 E+ + R+ P++ ++ S ++ +G DD + KP H E+ R+ A+ RR Sbjct: 61 EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L+ + + G V DG D ++ F R+L Y M + G+ ++K+ Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEF-------RLLRYFMLHPGQILSKS 173 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +Y +E + NV+E H++ LR+ KLG V+++R GY Sbjct: 174 HLSEHLYDGENER-DSNVIEVHVNHLRR----KLGRAVVETRRGQGY 215 >gi|315646972|ref|ZP_07900086.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277624|gb|EFU40949.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 224 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 3/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126 RA+ +PL+ ++ + F+ G DD + KP E+ RV A+ +R K+ S Sbjct: 69 RANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIGSTQTV 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G I + E LP +E +L L G+ + Q+ I+G+ D A + Sbjct: 129 HFGNIILDRQTYKVTRGTESLTLPLKEFELLYKLAGTPGQVYTREQLIDQIWGI-DYAGD 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V+ HI +LR++ F +++ R LGY ++ Sbjct: 188 DRTVDVHIKRLRERFAETPDFR-IETVRGLGYRLE 221 >gi|313898822|ref|ZP_07832356.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312956404|gb|EFR38038.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 230 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 8/174 (4%) Query: 35 EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94 E L+ + +ED + I ++ E ++ R +RA VP+I +S + G Sbjct: 35 ESGLKRALQEDFALILLDVMLPKEDGFQVCRNLRASKNVPIILVSAKREDMDKIRGLGLG 94 Query: 95 VDDVVNKPIHHREILARVA---AIYRRL----KVSNNRAETGPIRVFSDGRDPEVQGEVF 147 +D + KP + E++ARV A Y RL + N + + + + + + GE Sbjct: 95 ANDYIVKPFNPSELIARVKSQIANYERLTQGAQKKENLLQIENLMIDLNSHEVFLDGESL 154 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 LP +E +L +L N +K Q+F I+GL D E + V HI+++R+K+ Sbjct: 155 VLPNKEFELLVFLAKNPNIVFSKDQLFEKIWGL-DAIGEISTVTVHINRIREKI 207 >gi|296157300|ref|ZP_06840136.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295892636|gb|EFG72418.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 260 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 17/169 (10%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA +S +P++ ++ S+ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLRRLRARNSNMPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 118 Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A GP V GR V +V L RE +LE L+ G+ V+K Q Sbjct: 119 -----GAGGGPTVVRHGSLSFDQVGRIAYVNEQVIDLSARELGLLEVLLQRIGRLVSKEQ 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + E V N +E ++ +LRKK+ G + + R LGY ++ Sbjct: 174 LVDHLCE-WGEEVSNNAIEVYVHRLRKKIEPS-GVRII-TVRGLGYCLE 219 >gi|289679223|ref|ZP_06500113.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae FF5] Length = 222 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 102/227 (44%), Gaps = 24/227 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D +A G G +++ + + + A E I L G L Sbjct: 3 LLLVEDHVPLADELLAALGRQGYAVDWLA--DGRDAVHQGASEPYDLIVLDLGLPGMPGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 E+ + R+ P++ ++ S ++ +G DD + KP H E+ R+ A+ RR Sbjct: 61 EVLQHWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L+ + + G V DG D ++ F R+L Y M + G+ ++K+ Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEF-------RLLRYFMLHPGQILSKS 173 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +Y +E + NV+E H++ LR+ KLG V+++R GY Sbjct: 174 HLSEHLYDGENER-DSNVIEVHVNHLRR----KLGRAVVETRRGQGY 215 >gi|284051845|ref|ZP_06382055.1| two component transcriptional regulator [Arthrospira platensis str. Paraca] gi|291567764|dbj|BAI90036.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 253 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 81/162 (50%), Gaps = 9/162 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S +P+I ++ + + + G DD + KP +E+ AR+ AI RR K + + Sbjct: 79 IREISDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRRFKDNASSH 138 Query: 127 ETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + P +R+ + R ++ PL E +LE L G+ V++++I ++G Sbjct: 139 DLSPEVIQVDTLRIDTIKRRVYKGDKLLPLTYIEFNLLELLFKRSGEAVSRSEILQQLWG 198 Query: 180 LFDEAVEE-NVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + VV+ H+++LR K+ ++ + + + R +GYS Sbjct: 199 YTPRRIADMRVVDVHVARLRAKIETDQRNPEYILTVRGIGYS 240 >gi|229192651|ref|ZP_04319610.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228590741|gb|EEK48601.1| Two-component response regulator [Bacillus cereus ATCC 10876] Length = 235 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDVVMAKVKSALRRGYGEYA 124 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V++ ++ A Sbjct: 125 SAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVSREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225 >gi|226311053|ref|YP_002770947.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226094001|dbj|BAH42443.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 240 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 24/157 (15%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IR S+VP + +S + G DD V KP + E+++RV A++RR+ V Sbjct: 72 ELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRRMDV 131 Query: 122 -SNNRAETGPI-------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 S + I +++ +G+ EV F +IL LM + G+ Sbjct: 132 FSKGEKQNHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEF-------KILSLLMKHAGRV 184 Query: 168 VAKTQIFSAIYGLFDEAV-EENVVESHISKLRKKLRN 203 K I+ ++G E + +EN++ +ISKLR+K+ + Sbjct: 185 FTKASIYEHVWG--QEYIGDENLIMVYISKLREKIED 219 >gi|154509392|ref|ZP_02045034.1| hypothetical protein ACTODO_01923 [Actinomyces odontolyticus ATCC 17982] gi|153799026|gb|EDN81446.1| hypothetical protein ACTODO_01923 [Actinomyces odontolyticus ATCC 17982] Length = 219 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 94/189 (49%), Gaps = 23/189 (12%) Query: 48 AIEAFLIGKGEKVL---ELPRI--------IRAHS-QVPLIGISDYPSLQTTLDFFDSGV 95 A+EA L G+G +L LP I IR +P+I ++ S+ + + G Sbjct: 37 AVEAALQGRGALMLLDVGLPDIDGFEVLEQIRGQGVGMPVIMLTARSSVADRVAGLEGGA 96 Query: 96 DDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRR 152 DD V KP E+LARV R + S + A T G + + R V E L R Sbjct: 97 DDYVPKPFSFEELLARVRLRLRE-ETSTSSAMTLTRGSLVLDLKTRRARVGAEWVDLSAR 155 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVD 211 E +LE M N G+ +++ Q+ SA++G+ FD A NVV+ ++S LR+ K+G D + Sbjct: 156 EFTLLETFMRNPGQVLSREQLLSAVWGIDFDGA--SNVVDVYLSYLRQ----KIGKDYFE 209 Query: 212 SKRFLGYSI 220 + R +GY + Sbjct: 210 TVRGMGYRL 218 >gi|154495976|ref|ZP_02034672.1| hypothetical protein BACCAP_00259 [Bacteroides capillosus ATCC 29799] gi|150274859|gb|EDN01915.1| hypothetical protein BACCAP_00259 [Bacteroides capillosus ATCC 29799] Length = 223 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 7/151 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAETGP 130 VP+I ++ + ++ ++G DD V KP E+ ARV A+ RR + N G Sbjct: 78 VPVILLTARTAEMDRVNGLEAGADDYVVKPFGIMELQARVKAVLRRTRREEDNRLIRCGD 137 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + R GE L +E +L L +RG + + +I +++ +D E V Sbjct: 138 LEIDPAARVVRRGGEQVDLTFKEFELLRLLATHRGVALTRDEILQSVWD-YDYTGETRTV 196 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + H+ K LR KLG + + + R +GY ++ Sbjct: 197 DMHV----KTLRQKLGEEYITTVRGVGYKMN 223 >gi|30022615|ref|NP_834246.1| two-component response regulator ycbL [Bacillus cereus ATCC 14579] gi|229112000|ref|ZP_04241543.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock1-15] gi|229129822|ref|ZP_04258788.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-Cer4] gi|296505012|ref|YP_003666712.1| two-component response regulator ycbL [Bacillus thuringiensis BMB171] gi|29898173|gb|AAP11447.1| Two-component response regulator ycbL [Bacillus cereus ATCC 14579] gi|228653513|gb|EEL09385.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-Cer4] gi|228671323|gb|EEL26624.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock1-15] gi|296326064|gb|ADH08992.1| two-component response regulator ycbL [Bacillus thuringiensis BMB171] Length = 230 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 LE+ RIIR S VP++ +S + G DD + KP E+ ARV A I R Sbjct: 62 LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K S I++ DP E G+ L +E IL+ + N+ + K QI+ Sbjct: 122 KYSATETTEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++ + ++NV+ H+ +LR+K+ + Sbjct: 182 TLVWN-EEYYGDDNVINVHMRRLREKIES 209 >gi|330981352|gb|EGH79455.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 222 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 102/227 (44%), Gaps = 24/227 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D +A G G +++ + + + A E I L G L Sbjct: 3 LLLVEDHVPLADELLAALGRQGYAVDWLA--DGRDAVHQGATEPYDLIVLDLGLPGMPGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 E+ + R+ P++ ++ S ++ +G DD + KP H E+ R+ A+ RR Sbjct: 61 EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L+ + + G V DG D ++ F R+L Y M + G+ ++K+ Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEF-------RLLRYFMLHPGQILSKS 173 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +Y +E + NV+E H++ LR+ KLG V+++R GY Sbjct: 174 HLSEHLYDGENER-DSNVIEVHVNHLRR----KLGRAVVETRRGQGY 215 >gi|324328343|gb|ADY23603.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 235 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 125 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225 >gi|299132540|ref|ZP_07025735.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298592677|gb|EFI52877.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 218 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 79/167 (47%), Gaps = 8/167 (4%) Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 KG +VL R + ++Q+P+I ++ + + D G D + P RE+LAR+ AI Sbjct: 57 KGTEVLREFR--KLNAQLPVIVVTTRDGVDDRIHALDLGAADCLVMPFDIRELLARMRAI 114 Query: 116 YRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R N T G I + + G L RE +L+ LM G +++T + Sbjct: 115 LRHKGNGNPLILTNGLISLNPATHEVVHNGARVYLTARESALLQALMLRPGAILSRTDLE 174 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 IYG ++E + N VE I +R+ KLG + + R LG+ +D Sbjct: 175 RHIYG-WNERIASNAVEFLIHAIRR----KLGTSSIRNVRGLGWMVD 216 >gi|283833495|ref|ZP_06353236.1| DNA-binding response regulator PhoP [Citrobacter youngae ATCC 29220] gi|291071158|gb|EFE09267.1| DNA-binding response regulator PhoP [Citrobacter youngae ATCC 29220] Length = 206 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 2/129 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 +P++ ++ Q ++ +G DD V KP H E+ AR+ A+ RR +++ P Sbjct: 73 LPILVLTAREGWQDKVEVLSAGADDYVTKPFHIEEVAARMQALMRRNSGLASQIISLPPF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 +V R+ V EV L E I+E L+ N GK V+K + +Y E E + ++ Sbjct: 133 QVDLSRRELSVNDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYP-DAELRESHTID 191 Query: 192 SHISKLRKK 200 + +LRKK Sbjct: 192 VLMGRLRKK 200 >gi|322419045|ref|YP_004198268.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320125432|gb|ADW12992.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 227 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 98/219 (44%), Gaps = 20/219 (9%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRII 67 L ++GY + DG LE N L+ D+ ++ L G G V + R Sbjct: 21 LQQEGYKTVISHDGAEGLEAANRLQ----------PDLILLDLMLPGMLGTDVCKSIRKS 70 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 S +P++ ++ + F+ G DD V KP RE++ R+ AI RR +N+ AE Sbjct: 71 EKTSHIPVMMLTARGEEIDKVVGFEVGADDYVVKPFSTRELMLRIKAILRRNANANSPAE 130 Query: 128 TGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + I V D E V G+ E ++L L+ G+ ++ + ++G ++ Sbjct: 131 SAIINVGCISIDTERHLVTVDGKEVSFTTTEFKLLYTLVMRFGRVQSRDVLLRDVWG-YN 189 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V++H+++LR K+ D + + R GY ++ Sbjct: 190 FVEDTRTVDTHVTRLRTKMGE--AGDMIKTVRGFGYKLE 226 >gi|242242016|ref|ZP_04796461.1| response regulator [Staphylococcus epidermidis W23144] gi|242234525|gb|EES36837.1| response regulator [Staphylococcus epidermidis W23144] gi|319401273|gb|EFV89485.1| response regulator [Staphylococcus epidermidis FRI909] Length = 224 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 21/204 (10%) Query: 16 IALFGDDGVSLEGFNSLEFEEW-LQSSAREDVS-AIEAFLIGKGEKVL---ELP------ 64 I L DD + E E+W + ED S +E F E V+ +LP Sbjct: 3 ILLVEDDNTLFQELKK-ELEQWDFNVAGVEDFSHVMETFETFNPEIVILDVQLPKYDGFY 61 Query: 65 --RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 R +R S VP++ +S + + + G DD + KP + ++A++ AIYRR+ Sbjct: 62 WCRKMRQQSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEF 121 Query: 121 -VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V R + +D + + L + E ILE L+ R + V + + +A++ Sbjct: 122 GVEEKRTLSWQDATVDLSKDSIQKDDKTIFLSKTEMIILEMLINKRNQIVTRDTLITALW 181 Query: 179 GLFDEA-VEENVVESHISKLRKKL 201 DEA V +N + ++++LRKKL Sbjct: 182 D--DEAFVSDNTLTVNVNRLRKKL 203 >gi|229173256|ref|ZP_04300803.1| DNA-binding response regulator [Bacillus cereus MM3] gi|228610226|gb|EEK67501.1| DNA-binding response regulator [Bacillus cereus MM3] Length = 243 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/167 (23%), Positives = 82/167 (49%), Gaps = 9/167 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P++ IS + ++G DD ++KP H+ ++A++ + RR Sbjct: 73 RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDYA 132 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 KV E + ++ + +++ + + R E +LE LM N + V + + + ++ Sbjct: 133 PKVEERMVEQQGLCLYPERLILKLRNQEIDITRNEAILLEMLMKNYPRVVGREVLLNKLW 192 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223 + V++N + + +++RKKL+ D +++ R +GY I W+ Sbjct: 193 D-SESYVDDNTLSVNTTRVRKKLKTLQIEDAIETIRSVGYRLHITWD 238 >gi|257066704|ref|YP_003152960.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] gi|256798584|gb|ACV29239.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] Length = 237 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 22/202 (10%) Query: 10 LVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRII 67 L+KDGY DGV +LE FN EE + D+ ++ L + GE+VL + I Sbjct: 23 LIKDGYHVFQAFDGVKALEIFN----EEQI------DLVILDLMLPMLSGEEVL---KDI 69 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRA 126 R SQVP+I S + G DD V KP ++E++ RV A+ RR++ N RA Sbjct: 70 RNKSQVPVIITSAKVEEFDRIQGLRLGADDYVTKPFSNKELVERVKAVLRRIEKYNIPRA 129 Query: 127 E---TGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + T R+ D + G L + E I++ L ++ K + +I +GL Sbjct: 130 DIIKTNDGRLLMDLKYNRFLKDGREISLTKNEFSIVKTLFSSPNKIFTRDEIIELTFGL- 188 Query: 182 DEAVEENVVESHISKLRKKLRN 203 D + +++HI +R+K+ + Sbjct: 189 DYDAYDRAIDTHIKNIRQKIED 210 >gi|254422271|ref|ZP_05035989.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196189760|gb|EDX84724.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 227 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 12/209 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + D L G S++ + E + S + D+ ++ L L Sbjct: 3 ILLVDDEVELTDPLSHLLRRQGYSVDVASDGETGAQMAISGQYDLLILDRML--SKMSGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R+ + P++ ++ +L +D D+G DD + KP RE+LARV A+ RR Sbjct: 61 EICQKVRSQALSTPVLFLTAKDTLDDRVDGLDAGADDYLVKPFELRELLARVRALLRR-- 118 Query: 121 VSNNRAETGPIRVFSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + I F D + E Q G+ L +E ++L YLM + + + QI+ Sbjct: 119 PGSPSVASPSILQFEDLKLQVENQLVSRNGKSIELSDKEVQLLAYLMRSPHQLLTHAQIY 178 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 A++G A N + + + LRKK+ Sbjct: 179 DAVWG-EGSAPSSNTLAAQMRLLRKKIEQ 206 >gi|90961187|ref|YP_535103.1| two-component response regulator [Lactobacillus salivarius UCC118] gi|90820381|gb|ABD99020.1| Two-component response regulator [Lactobacillus salivarius UCC118] Length = 229 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 8/168 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R SQ+P++ +S + G DD V KP + E++ARV ++ RR + Sbjct: 61 MEVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRAE 120 Query: 121 --VSNN---RAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V NN + E GP+ + D + ++G+ L E IL L ++ + + +IF Sbjct: 121 HNVKNNELDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHPNRVFSADEIF 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ + G + + +GY I+ Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227 >gi|52141066|ref|YP_085763.1| response regulator [Bacillus cereus E33L] gi|51974535|gb|AAU16085.1| response regulator [Bacillus cereus E33L] Length = 235 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 125 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225 >gi|21673488|ref|NP_661553.1| DNA-binding response regulator [Chlorobium tepidum TLS] gi|21646594|gb|AAM71895.1| DNA-binding response regulator [Chlorobium tepidum TLS] Length = 236 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 95/196 (48%), Gaps = 10/196 (5%) Query: 35 EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFF 91 EE L R V+ + ++ G E+ R IR + Q +P++ ++ + F Sbjct: 37 EEALDELQRHAVNLVLLDIMLPGIDGFEVCRRIRQNVQWSDLPIVMLTAKGEEIDKVFGF 96 Query: 92 DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEVF 147 + G+DD V KP RE+ R+ AI +R + + + + +G I + + + G Sbjct: 97 ELGIDDYVVKPFSPRELNLRIRAILKRDRRNRSNVQEVLRSGGIELDIGRHEATLDGRPL 156 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L E ++L LM +G+ + + S ++ + D+++ +++H+++LR+KL + F Sbjct: 157 VLTLMEFKLLALLMKRKGQAQTREVLLSDVWDV-DKSINTRTIDTHVTRLREKLGDAGRF 215 Query: 208 DPVDSKRFLGYSIDWN 223 + + R LGY D N Sbjct: 216 --IRTVRGLGYKFDEN 229 >gi|331003642|ref|ZP_08327137.1| hypothetical protein HMPREF0491_01999 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412269|gb|EGG91662.1| hypothetical protein HMPREF0491_01999 [Lachnospiraceae oral taxon 107 str. F0167] Length = 225 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 4/162 (2%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +R +P++ ++ + ++ DSG D + KP RE+LA V A+ RR Sbjct: 61 QVARTLRKEKNGLPILMLTAKSDILDRVEGLDSGADYYLTKPFDRRELLACVNALLRRQG 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N+ G + D + + GE L +E +++ L+ ++K I+G Sbjct: 121 KEVNQISYGNTTLDIDSGEL-ISGENSIRLSSKEFQMMRLLLKEGKNNISKNLFLEKIWG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D EN VE +I LRKKL+ + + R LGY ++ Sbjct: 180 -YDSDATENNVEVYIGFLRKKLKTLSSDISIIASRGLGYHLE 220 >gi|325003645|ref|ZP_08124757.1| two-component response regulator [Pseudonocardia sp. P1] Length = 232 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 21/199 (10%) Query: 28 GFNSLEFEE-----WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDY 81 G+ LE + W D ++ L G L++ R +RA Q+P++ ++ Sbjct: 28 GYGVLEVADGRAGLWWAVEHAPDAVVLDLML--PGMDGLQVCRELRARRPQLPIVVLTAL 85 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI-----RVFSD 136 + + G DD V KP RE++ R+ ++ RR + A GP+ V Sbjct: 86 GEEEDRVRGLQLGADDYVVKPFSPRELVLRIGSVLRR--SAPEAATVGPVVDGGLVVDRS 143 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 G+ + G L RE +L +L+A+ G+ +T++ + ++G E +++ V H+ Sbjct: 144 GQRAHLDGVPLALTGREFDLLAFLVAHPGRAFTRTELLAEVWGW--EYGDQSTVTVHV-- 199 Query: 197 LRKKLRNKLGFDPVDSKRF 215 ++LR KL DP +R Sbjct: 200 --RRLREKLEIDPNRPRRI 216 >gi|307946640|ref|ZP_07661975.1| transcriptional activator protein Irlr [Roseibium sp. TrichSKD4] gi|307770304|gb|EFO29530.1| transcriptional activator protein Irlr [Roseibium sp. TrichSKD4] Length = 226 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 16/163 (9%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A P++ ++ + ++ ++G DD + KP E+ ARV A+ RR ++ + ET Sbjct: 69 AKVATPVLFLTAMGDVDDRVEGLEAGGDDYLAKPFAFSELKARVGALGRRSSFASEQTET 128 Query: 129 GPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + V +D E+ G+ L +E +LE L+ + G+ + + ++ Sbjct: 129 TKLNV----KDIELDLLRRKCTRAGQDVDLNGKEFALLEALIRSNGRIQTRNMLLEKVWN 184 Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + FD +VVE+HIS+LR K+ G + + R GY I+ Sbjct: 185 MNFDPTT--SVVETHISRLRGKIEKPFGDTVIRTVRGAGYVIE 225 >gi|304398321|ref|ZP_07380195.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|304354187|gb|EFM18560.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] Length = 226 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 99/216 (45%), Gaps = 24/216 (11%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 D + L G G+ +G S EF + D+S I+ R +R +S+ Sbjct: 26 DAQLVLTGSAGI--QGALSGEFTAMILDIMLPDMSGIDVL------------RQVRQNSR 71 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128 +P+I ++ + + G DD + KP + RE++AR+ A+ RR + + + Sbjct: 72 IPVIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFEEQVPQPDAREPL 131 Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + R E QG F L E +L+ L+ + V+K ++ G EA + Sbjct: 132 RWGELTLNPATRMSEWQGRAFDLTASEFNLLDLLLRAPDRVVSKDELSEKGLGRPREAYD 191 Query: 187 ENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSI 220 + V+ HIS +R+KL + L D ++ + R +GY I Sbjct: 192 RS-VDVHISNIRQKL-SALTADSINIETVRSIGYRI 225 >gi|296875808|ref|ZP_06899870.1| transcriptional regulatory protein CpxR [Streptococcus parasanguinis ATCC 15912] gi|296433179|gb|EFH18964.1| transcriptional regulatory protein CpxR [Streptococcus parasanguinis ATCC 15912] Length = 229 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 97/210 (46%), Gaps = 18/210 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D +++ +L +D L+ F+ E Q A D+ ++ L GK G++V Sbjct: 4 ILLIEDNNDIQEILYSLLSEDHEVLQAFSGTEGLRLFQQEAI-DLVLLDIMLPGKNGDQV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE IR SQVP+I ++ + +G +D + KP + E+ ARV R Sbjct: 63 LE---EIRMQSQVPVIMMTALGDKHLISQYLLAGANDYIVKPFNLDEVAARVTVQLRNQP 119 Query: 121 VSNNRAETGPIRVFSD-GRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ F + +PE + + L ++E +I E L+ + K K +++ Sbjct: 120 TVVQEAQASQKLSFKNLVLNPETFELESEEQTLRLGKKEFQIFETLLVHPKKIFTKEELY 179 Query: 175 SAIYGLFDEAVE---ENVVESHISKLRKKL 201 A++ E V +N + + +S LRKK+ Sbjct: 180 EAVW----EEVYLPGDNTLNAQLSNLRKKI 205 >gi|229550945|ref|ZP_04439670.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229315770|gb|EEN81743.1| response regulator [Lactobacillus rhamnosus LMS2-1] Length = 258 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/152 (25%), Positives = 78/152 (51%), Gaps = 3/152 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRA 126 R +P++ I+ + + F+SG+DD + KPI+ E+L R+ A+ RR K++ +N Sbjct: 103 RTDPSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLRRAKITADNLL 162 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + ++ +V + + RE +IL L++ ++ ++ + + L + Sbjct: 163 IVGNLTLNNEAITAQVNHQTVDVTVREFQILYKLLSYPDHAFSRAELINEFWDLASDT-S 221 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ +I+KLR+K + GF + + LGY Sbjct: 222 MRAVDVYITKLREKFKAADGF-TIKTIHGLGY 252 >gi|255280864|ref|ZP_05345419.1| subtilin biosynthesis regulatory protein SpaR [Bryantella formatexigens DSM 14469] gi|255268801|gb|EET62006.1| subtilin biosynthesis regulatory protein SpaR [Bryantella formatexigens DSM 14469] Length = 240 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 4/144 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR P++ ++ + F +G DD + KP E+ ARVAA RR Sbjct: 77 MEVCRRIRDFVPCPILFLTARIEESDRVQGFAAGGDDYILKPFSLAELEARVAAHLRRET 136 Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N A + + R V E P++E I+E L AN G+ K +I+ + Sbjct: 137 RRINGASVRFDKELSIDYSQRKVFVNKETLAFPKKEFAIIELLSANAGQVFDKERIYEKV 196 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G +D + +VV HI ++R +L Sbjct: 197 WG-YDGEGDSSVVAEHIRRIRARL 219 >gi|161506258|ref|YP_001573369.1| DNA-binding transcriptional regulator QseB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867605|gb|ABX24228.1| hypothetical protein SARI_04453 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 270 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +LI+D L+ DG A G S++ F + SA D ++ L G G + Sbjct: 54 ILLIEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAPYDAVILDLTLPGMDGRDI 113 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R Q P++ ++ +L ++ G DD + KP E+ AR+ A+ RR Sbjct: 114 LREWR--EKGKQEPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALVRRAS 171 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ G + + + L +E +LE LM N+G+ + + I +Y Sbjct: 172 GQASSELRHGQVTLNPGNLVATLADAPLALKPKEFALLELLMRNKGRVLPRKLIEEKLYN 231 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D+ V N VE H+ LR+ KLG + + + +GY++ Sbjct: 232 -WDDDVSSNAVEVHVHHLRR----KLGSEFIRTVHGIGYTL 267 >gi|145594662|ref|YP_001158959.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303999|gb|ABP54581.1| response regulator receiver [Salinispora tropica CNB-440] Length = 252 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 18/188 (9%) Query: 31 SLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP---------RIIRAHSQVPLIGI 78 +L +E W +A ++A+ A + + V+ LP R+ VP++ + Sbjct: 44 ALRYEGWQVRTAGNGMAALSAARQFQPDAVVLDVMLPDLDGFAVLRRLREVAPTVPVLFL 103 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAET----GPIRV 133 + +++ + G DD V KP E++AR+ A+ RR + R E G + + Sbjct: 104 TARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGFAVTARQEAVLTVGDLSL 163 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D + G++ L E +L YLM N + ++K QI ++ +D + NVVE + Sbjct: 164 DEDSHEVSRDGQLINLTATEFELLRYLMRNPRRVLSKAQILDRVWN-YDFGGQANVVELY 222 Query: 194 ISKLRKKL 201 IS LRKK+ Sbjct: 223 ISYLRKKI 230 >gi|315179960|gb|ADT86874.1| DNA-binding response regulator [Vibrio furnissii NCTC 11218] Length = 219 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 22/216 (10%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 +L + G++ DG+ + EEW DV ++ L K + + L I Sbjct: 19 SLEQTGWVPELSQDGI--DALYRATSEEW-------DVIVLDLGL-PKLDGLTVLKGIRD 68 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 + P++ +S +L ++ ++G DD + KP E++AR+ A RR S N + Sbjct: 69 ENINTPVVILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPV 126 Query: 129 GPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 I S D R +V +G+ L E +++ Y M N K +++T++ IY FD Sbjct: 127 MQIGDLSLDTRSSKVMWRGQAINLTALEYKVVAYFMHNPEKVISRTELVEHIYKQDFDR- 185 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E I ++RKK+ + + + R LGY + Sbjct: 186 -DSNTIEVFIGRIRKKIAPNI----IKTVRGLGYQL 216 >gi|311696838|gb|ADP99711.1| two-component response regulator [marine bacterium HP15] Length = 233 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 29/178 (16%) Query: 53 LIGKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L+ G L + R IRA VP++ ++ + + + G DD + KP E+ AR Sbjct: 54 LMLPGLDGLAVCREIRACPGYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELAAR 113 Query: 112 VAAIYRRLKVSNNRAETG--------------PI--RVFSDGRDPEVQGEVFPLPRRERR 155 + A++RR+ + A G P+ RVF D R+ + L RE Sbjct: 114 IKALFRRVDALSQAAPAGDQADEIEVDGLRIDPVRRRVFVDDREVD-------LTAREFD 166 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +L + ++RG+ ++ Q+ +++G E E+ V +HI+ +LRNK+ DP D + Sbjct: 167 LLWHFASHRGRVFSRAQLLDSVWGYNHEGY-EHTVNTHIN----RLRNKIEADPADPR 219 >gi|302387594|ref|YP_003823416.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302198222|gb|ADL05793.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 233 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/210 (22%), Positives = 100/210 (47%), Gaps = 15/210 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ + + EE + + +++ + ++ E Sbjct: 5 LVVDDEKLIVKGMRFSLEQDGMEVDC--AYDGEEAINLAKQKEYDVVLLDVMLPKYDGYE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S++P+I ++ + + + G DD + KP + E+ AR+ AI RR Sbjct: 63 VCQAIREFSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNSKK 122 Query: 123 NNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N R G +++ D R + + L +E +LE L N GK ++ Q+ Sbjct: 123 NKRDSQDDSQVVIAGDLKLDRDSRRVFIAEKEINLTAKEFDLLELLTCNPGKVYSREQLL 182 Query: 175 SAIYGLFDEAVEEN---VVESHISKLRKKL 201 + ++G ++A++ V+ H+ +LR+K+ Sbjct: 183 TYVWG--NKAMDTGDVRTVDVHVRRLREKI 210 >gi|295133762|ref|YP_003584438.1| two component transcriptional regulator winged helix family protein [Zunongwangia profunda SM-A87] gi|294981777|gb|ADF52242.1| two component transcriptional regulator, winged helix family protein [Zunongwangia profunda SM-A87] Length = 222 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 15/215 (6%) Query: 18 LFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGK-----------GEKVLELP 64 L +D + GF LE E + A +E L GK G +E+ Sbjct: 4 LIVEDETGISGFLKQGLEEESFAVDIADNGKKGLELALTGKYDLLLLDWMLPGLSGIEIC 63 Query: 65 RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R R + P++ ++ ++ T+ SG +D + KP H E+L R+ R + Sbjct: 64 RQFRKEDKETPVLFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIKVQLRPKSGEH 123 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 GPI + + G+ L +E +LEYL+ N+ + +T+I ++ + + Sbjct: 124 AIFSLGPIELNTGTHQAFKNGKEVNLTLKEFALLEYLIRNKERVCTRTKIIEKVWDI-NF 182 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + V++ +I+ LR+KL + + + R +GY Sbjct: 183 SYNTGVIDVYINALRRKLDLDQDENYIQTVRGVGY 217 >gi|228910361|ref|ZP_04074177.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 200] gi|228849313|gb|EEM94151.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 200] Length = 241 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 LE+ RIIR S VP++ +S + G DD + KP E++ARV A I R Sbjct: 73 LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELVARVKAGIRRST 132 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K S I++ DP E G L +E IL+ + N+ + K QI+ Sbjct: 133 KYSATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIY 192 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++ + ++NV+ H+ +LR+K+ + Sbjct: 193 TLVWNE-EYYGDDNVINVHMRRLREKIES 220 >gi|226305622|ref|YP_002765582.1| OmpR family two-component response regulator [Rhodococcus erythropolis PR4] gi|229489559|ref|ZP_04383422.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|226184739|dbj|BAH32843.1| putative OmpR family two-component response regulator [Rhodococcus erythropolis PR4] gi|229323656|gb|EEN89414.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 226 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 7/145 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDF---FDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ R IRAH + + + +DF D+G DD V+KP E++ARV A+ R Sbjct: 61 LEVCRQIRAHRTS--LAVLMLTARTDEVDFVVGLDAGADDYVSKPFRLAELMARVRALLR 118 Query: 118 RLKVSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + E G IR+ R V G L +E +L L+ + G+ V++ I Sbjct: 119 RHGGREDTIVEVGGIRLEPAARRVLVNGSEIALANKEYELLRVLLEHAGEVVSRDTILRE 178 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++G E ++ H+S LR+K+ Sbjct: 179 VWGDV-ELRGSKTLDMHMSWLRRKI 202 >gi|188578300|ref|YP_001915229.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|188522752|gb|ACD60697.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 230 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 P++ ++ ++ + D G DD + KP RE AR + RR + ++ + G Sbjct: 70 TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNRGKASEVVQIGGF 129 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + G LP RE R+ + L+ G+ V K +I + ++G FD+ N +E Sbjct: 130 VFDNAAHTLTLDGVPIELPNREYRLFDILIGRLGRVVGKDEIGNGLFG-FDDDAGPNAIE 188 Query: 192 SHISKLRKKL 201 ++ +LR+KL Sbjct: 189 LYVGRLRRKL 198 >gi|204930785|ref|ZP_03221658.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320244|gb|EDZ05448.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 226 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 97/214 (45%), Gaps = 14/214 (6%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 + L + GY+ + DG + L + +E S I ++ G ++ R + Sbjct: 18 QGLTEAGYVVDYACDG-----------RDGLHLALQEHYSLIILDIMLPGLDGWQVLRAL 66 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ R Sbjct: 67 RTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLT 126 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 + + + + G+ L R+E +L L + G+ V +T I S ++G+ FD E Sbjct: 127 INGLDMDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDS--E 184 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N V+ I +LR K+ + + + R +GY + Sbjct: 185 TNTVDVAIRRLRAKVDDPFENKLIMTVRGMGYRL 218 >gi|168180586|ref|ZP_02615250.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226949883|ref|YP_002804974.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182668498|gb|EDT80477.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226840760|gb|ACO83426.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 232 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 4/113 (3%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150 G DD + KP RE++ARV A+ RR N +++ G I V + GE L Sbjct: 99 GADDYITKPFSVREMVARVKAVLRRRTTINIESKSYILGNIVVDFEKHSLTKAGEKIELT 158 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 +E +LE L+ N+GK + + + I+G ++ E V+ HI LRKK+ + Sbjct: 159 LKEFELLEVLIKNKGKVMTRDFLLDRIWG-YEYIGETRTVDVHIRHLRKKIED 210 >gi|148380484|ref|YP_001255025.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932630|ref|YP_001384708.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937638|ref|YP_001388229.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289968|emb|CAL84081.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928674|gb|ABS34174.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933552|gb|ABS39051.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|322806798|emb|CBZ04367.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Clostridium botulinum H04402 065] Length = 232 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 4/113 (3%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLP 150 G DD + KP RE++ARV A+ RR N +++ G I V + GE L Sbjct: 99 GADDYITKPFSVREMVARVKAVLRRRTTINIESKSYILGNIVVDFEKHSLTKAGEKIELT 158 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 +E +LE L+ N+GK + + + I+G ++ E V+ HI LRKK+ + Sbjct: 159 LKEFELLEVLIKNKGKVMTRDFLLDRIWG-YEYIGETRTVDVHIRHLRKKIED 210 >gi|126650615|ref|ZP_01722838.1| transcriptional activator protein [Bacillus sp. B14905] gi|126592771|gb|EAZ86770.1| transcriptional activator protein [Bacillus sp. B14905] Length = 230 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 17/188 (9%) Query: 48 AIEAFLIGKGEKV---LELPRI--------IRAHSQ-VPLIGISDYPSLQTTLDFFDSGV 95 A+E F I + + + L LP++ IR S+ V ++ +S ++ + D G Sbjct: 36 ALELFEINEYDLIILDLNLPKMDGIEVLEQIRVQSEDVKILILSARSAIHDKIAGLDRGA 95 Query: 96 DDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER 154 +D + KP +E+ AR+ + RR + I + S + V GE+ P+ ++E Sbjct: 96 NDYLIKPFDFQELDARIRNLLRRTFSQKSTIMSLEKITLDSSRKIVLVNGEIIPVTKKEY 155 Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLG-FDPVDS 212 ILEYLM + K V+ ++ ++ EA + N ++ HI LRKK+ + LG + + + Sbjct: 156 AILEYLMLQQNKVVSSEELIEHVWD--SEADLFSNSLKFHIHSLRKKIADVLGEKEVIQT 213 Query: 213 KRFLGYSI 220 R GY I Sbjct: 214 VRGQGYMI 221 >gi|126642907|ref|YP_001085891.1| OmpR family transcriptional regulator [Acinetobacter baumannii ATCC 17978] Length = 199 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 3/142 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +R S +P+I ++ + + G DD V KP +E++ARV A+ RRL+ Sbjct: 32 LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLE 91 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 92 RKAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHINPD 151 Query: 180 LFDEAVEENVVESHISKLRKKL 201 FD V + V++SHI LR+K+ Sbjct: 152 SFD--VADRVIDSHIKNLRRKI 171 >gi|119487882|ref|ZP_01621379.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119455458|gb|EAW36596.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 222 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 17/157 (10%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 +VP+I ++ ++ + + G DD V KP E+LARV A R +S + E Sbjct: 73 KVPIIILTARDDIEDKVAGLEEGADDYVTKPFRFAELLARVRARLRHQTLSPVKEE---- 128 Query: 132 RVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 RV + G R +V L +E ++LE LM + + +++ Q+ ++G +D Sbjct: 129 RVLTAGDILLDLYTRQAQVADCPIKLSAKEFQLLETLMRHPEQVMSREQLLDRVWG-YDY 187 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+V+ ++ LRK KLG + +++ R +GY + Sbjct: 188 DPGSNIVDVYVGYLRK----KLGGNRIETVRGMGYRL 220 >gi|84622660|ref|YP_450032.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366600|dbj|BAE67758.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 233 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 12/135 (8%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ ++ ++ + D G DD + KP RE AR + RR NR + + Sbjct: 73 TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRR-----NRGQASEVV 127 Query: 133 -----VFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 VF + + G LP RE R+ + L+ G+ V K +I + ++G FD+ Sbjct: 128 QIGGFVFDNAAHTLTLDGVPIELPNREYRLFDILIGRLGRVVGKDEIGNGLFG-FDDDAG 186 Query: 187 ENVVESHISKLRKKL 201 N +E ++ +LR+KL Sbjct: 187 PNAIELYVGRLRRKL 201 >gi|308174713|ref|YP_003921418.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307607577|emb|CBI43948.1| two-component response regulator controlling resistance to antibiotics affecting the envelope [YtsB] [Bacillus amyloliquefaciens DSM 7] gi|328554642|gb|AEB25134.1| two-component response regulator controlling resistance to antibiotics affecting the envelope (YtsB) [Bacillus amyloliquefaciens TA208] gi|328913051|gb|AEB64647.1| two-component response regulator controlling resistance to antibiotics affecting the envelope [Bacillus amyloliquefaciens LL3] Length = 231 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 17/164 (10%) Query: 65 RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R+IR+ S VP++ +S D+P+ + G DD + KP H ++A++ A++RR+ Sbjct: 65 RMIRSQSNVPILFLSSRDHPA--DMVMSMQLGADDFIQKPFHFDVLIAKIQAVFRRVYQY 122 Query: 123 NNRAETGPIRVFS----DGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N AE I+ +S D V E L + E IL+ L + K V++ ++ + Sbjct: 123 N--AEPALIKRWSGAAIDAETNMVSHENGSVELTKNEMLILKLLAEQKNKIVSREELIRS 180 Query: 177 IYGLFDEA-VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 ++ DE V +N + ++++LRKKL ++LG +++K GY Sbjct: 181 LWN--DERFVSDNTLTVNVNRLRKKL-DQLGIGKMIETKVGQGY 221 >gi|304436456|ref|ZP_07396430.1| two component response regulator IrlR [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370502|gb|EFM24153.1| two component response regulator IrlR [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 225 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 3/141 (2%) Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDP 140 S++ + D+G DD + KP E+LAR+ A+ RR ++ + E G ++ Sbjct: 83 SVEDRVKGLDAGADDYLVKPFEFSELLARLRALGRRSTQRIQHEVDEIGGFKLNRTANIL 142 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 E G++ L RE ++ + L N G V + I I+GL + V N ++S++ LRKK Sbjct: 143 EKNGKIIQLSPREFQLFDLLAQNIGIVVPRDIILDRIWGL-EADVSSNNIDSYMKMLRKK 201 Query: 201 LRNKLGFDPVDSKRFLGYSID 221 L + + R +GY ++ Sbjct: 202 LDAAGEGASIKTIRGVGYKLE 222 >gi|299536051|ref|ZP_07049368.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298728475|gb|EFI69033.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 231 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 4/161 (2%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKV 121 L RI SQ P+I ++ ++ + D G +D V KP E+LAR+ A++ KV Sbjct: 65 LKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALWFSQKV 124 Query: 122 SNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + G + + R+ + L RE +L YL+ + + + + QI A++G Sbjct: 125 SPKQVALSFGHLSINEQTREVVYFDKEIQLTPREYDLLFYLLKHPKQVLTREQILEAVWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + NVV+ +I +R+KL + + R +GY + Sbjct: 185 -YDYYGDTNVVDVYIRYVRQKLEAANPTPLIQTIRGVGYVL 224 >gi|295091538|emb|CBK77645.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 232 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 6/151 (3%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G V E R + ++Q+P+I ++ + D G DD V KP E+ +R+ A Sbjct: 59 GTGFDVCEKVR--KQNTQIPIIFLTASDEEVNVIRGLDCGGDDYVTKPFKLGELCSRIRA 116 Query: 115 IYRRLKVSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + RR VS+ N + G I + + G + L E R+L L+ N + V++ Sbjct: 117 LLRRAGVSSQDKTNILKCGDISIDLLASRVLLNGRILELTNAEYRLLCLLVRNANRVVSR 176 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 I + ++ V++N + +I +LR+K+ Sbjct: 177 DIILNDLWDGTGNFVDDNTLSVYIRRLREKV 207 >gi|253996710|ref|YP_003048774.1| winged helix family two component transcriptional regulator [Methylotenera mobilis JLW8] gi|253983389|gb|ACT48247.1| two component transcriptional regulator, winged helix family [Methylotenera mobilis JLW8] Length = 228 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 4/139 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSN 123 +RA P+I + Q + ++G DD V KP ++AR+ A+ RR V Sbjct: 68 LRAKKLPPIIFFTGRSEEQDIVRVIEAGADDYVVKPASRPLLMARIHALLRRTSNQLVDK 127 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E +R + R + GE L +E + Y + N G +++ + + ++G E Sbjct: 128 TNYEFYALRFDTKLRVATLAGEAVRLTDKEFDLALYFLKNEGVLLSRVHLMNVVWGATSE 187 Query: 184 AVEENVVESHISKLRKKLR 202 VE V+ HIS LR KL+ Sbjct: 188 -VETRKVDVHISHLRTKLK 205 >gi|229152733|ref|ZP_04280917.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus m1550] gi|228630711|gb|EEK87356.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus m1550] Length = 230 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 7/149 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 LE+ RIIR S VP++ +S + G DD + KP E+ ARV A I R Sbjct: 62 LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K S I++ DP E G+ L +E IL+ + N+ + K QI+ Sbjct: 122 KYSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 + I+ + ++NV+ H+ +LR+K+ + Sbjct: 182 TLIWN-EEYYGDDNVINVHMRRLREKIES 209 >gi|218778176|ref|YP_002429494.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218759560|gb|ACL02026.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 235 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 4/121 (3%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGR-DPEVQGEVF 147 F +G DD V+KP +E++ RV A+ RR + + G I +F + + + Sbjct: 96 FSAGADDYVSKPFSLKELMVRVEAVLRRSGKNLGTAKVSIGGI-IFDEAQLKASYDDKTE 154 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L RRE I+ YL G+ V K ++ ++ D VE V+ H+ KLRKK+ G Sbjct: 155 ELTRREMDIVLYLHRQEGRIVPKRELLLEVWHYNDPDVETRTVDIHVLKLRKKITELAGE 214 Query: 208 D 208 D Sbjct: 215 D 215 >gi|118480165|ref|YP_897316.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|118419390|gb|ABK87809.1| response regulator [Bacillus thuringiensis str. Al Hakam] Length = 225 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 7/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++D S + + +G DD + KP E++ARV AI RR Sbjct: 62 EICRQIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 120 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + ET + +F D V+ G+ L +RE +L +L+ N+ +++ + + Sbjct: 121 CNQQNETTFYQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + V NVV+ +I +RKKL+ + + + GYS+ Sbjct: 181 VWG-HNVVVNPNVVDLYIGYVRKKLKCEKKNRYIQTIHGRGYSM 223 >gi|28211540|ref|NP_782484.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28203981|gb|AAO36421.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 235 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 90/213 (42%), Gaps = 19/213 (8%) Query: 12 KDGYIALFGDDGVSLEGFNSL----EFEEWLQSSAREDVSAIEAF-------LIGKGEKV 60 K+ I + DD E N L F W S+A ++ +E ++ G Sbjct: 6 KNAIILIVDDDEEIREIINILLSREGFVVWEASNANTAMAMLEKPVDLIILDIMMPGRNG 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL IR + VP++ +S + F G DD + KP E+L R+ A+ RR Sbjct: 66 FELCTEIRKITTVPILFLSAKTQDIDKEEGFCCGGDDYLIKPFSQSELLLRIKALLRRFF 125 Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V ++N + G + V + + G+ L E +IL +L+ NR K ++ + Sbjct: 126 VYQGVNNVSTDNTIKLGDLNVDFETGKVCINGDKVSLTGIEYQILSFLLHNRKKVLSARE 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 I+ ++ + N + HI LR+KL L Sbjct: 186 IYEHVWQEPFLPLSNNTIMVHIKNLRRKLEKDL 218 >gi|283835062|ref|ZP_06354803.1| DNA-binding response regulator CreB [Citrobacter youngae ATCC 29220] gi|291069354|gb|EFE07463.1| DNA-binding response regulator CreB [Citrobacter youngae ATCC 29220] Length = 229 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/226 (23%), Positives = 100/226 (44%), Gaps = 16/226 (7%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE- 62 L++D + D + + +G S+E F E L + +A ++ G + Sbjct: 8 LVEDEQGIADTLVYMLQQEGFSVEAF-----ERGLPVLEKARQRCPDAIILDVGLPDISG 62 Query: 63 ---LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 R++ H +P++ ++ L + G DD V KP RE+ ARV + RR+ Sbjct: 63 FELCRRLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRV 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFS 175 + + A T F + + Q F +P R E +L+ L+ + G+ ++ Q+ Sbjct: 123 QKFASPASTTRCGDF-ELNELAAQITWFGIPLTLTRYEFLLLKTLLMSPGRIYSRQQLMD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ + + V++HI LR KLR P+++ R +GYS+ Sbjct: 182 LVWADAQDTFDRT-VDTHIKTLRAKLRAINPEISPINTHRGMGYSL 226 >gi|229193134|ref|ZP_04320089.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] gi|228590398|gb|EEK48262.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] Length = 232 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172 KV+ N++ E G + + + R V GE L +E IL YL+A+ K+V + Sbjct: 124 LNQPKVAENKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 IF ++ D+ E N V HI LRKKL Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210 >gi|227432429|ref|ZP_03914417.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351795|gb|EEJ42033.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 234 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 9/135 (6%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV------FSDGRDPEVQGE-V 146 G DD + KP RE++AR+ A+ RR +VS + +T + + +D + ++ V Sbjct: 99 GADDYITKPFSPREVVARLKAVLRRSQVSTDTYKTDEMVISIQDLLINDSKKTVMKENIV 158 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKL 205 L RE +L Y G+ + + I +A++G ++ E +V+ HIS LR K+ N Sbjct: 159 LSLTPREYDLLLYFAQRLGRVIDRETILTAVWG-YEYTGESRMVDMHISNLRDKIESNPK 217 Query: 206 GFDPVDSKRFLGYSI 220 + + R GY++ Sbjct: 218 APKILKTVRGFGYTM 232 >gi|220903843|ref|YP_002479155.1| winged helix family two component transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868142|gb|ACL48477.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 225 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 8/164 (4%) Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R++ A ++ +P++ ++ + G DD V KP RE++ R+ A+ RR Sbjct: 63 EICRLLGAQAETAHIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIRAVLRR 122 Query: 119 LKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S E IR+ D E GE L E R+LE L+ + G + Q+ + Sbjct: 123 GTRSGESPVLERHGIRLRPDAHTAEAHGEELQLTATEFRLLEDLLRHAGSVRTREQLLNK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G E V++H+ +LR KL + +++ R +GY I Sbjct: 183 VWGYSFEGY-ARTVDTHVRRLRAKLGHAASM--LETVRGVGYRI 223 >gi|169628171|ref|YP_001701820.1| two component response transcriptional regulatory protein MprA [Mycobacterium abscessus ATCC 19977] gi|169240138|emb|CAM61166.1| Mycobacterial persistence regulator MrpA (two component response transcriptional regulatory protein) [Mycobacterium abscessus] Length = 230 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 10/167 (5%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R+ +P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR Sbjct: 62 LEVCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQI 173 + + A+ + DP V EV L R E +LE LMAN + + +++I Sbjct: 122 TIDES-ADAATLSFGDLTLDP-VTREVHRGTRSISLTRTEFALLEMLMANPRRVLTRSRI 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD N +E ++ LR+K + + + R +GY + Sbjct: 180 LEEVWG-FDFPTSGNALEVYVGYLRRKTEAEGELRLIHTVRGVGYVL 225 >gi|156742742|ref|YP_001432871.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156234070|gb|ABU58853.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 231 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 15/135 (11%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNR-----AETGPIRVFSDGRDPEVQGEVFP 148 G DD + KP RE++ARV A++RR + +++ ++GP+ + + + GE Sbjct: 96 GADDYLTKPFSPRELVARVRAMFRRPRHADDEPAPLLVQSGPLTIDVARHEALLAGEPLK 155 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L E +L L + G+ + Q+ ++G D +++V++ HI+ LRK KLG D Sbjct: 156 LTNLEYALLSVLASAPGRVFTRAQLIERVWG-NDYFGDDHVIDVHIANLRK----KLGDD 210 Query: 209 P-----VDSKRFLGY 218 P + + R +GY Sbjct: 211 PTRPTFIMTVRGIGY 225 >gi|116617701|ref|YP_818072.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096548|gb|ABJ61699.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 230 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 9/135 (6%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV------FSDGRDPEVQGE-V 146 G DD + KP RE++AR+ A+ RR +VS + +T + + +D + ++ V Sbjct: 95 GADDYITKPFSPREVVARLKAVLRRSQVSTDTNKTDEMVISIQDLLINDSKKTVMKENIV 154 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKL 205 L RE +L Y G+ + + I +A++G ++ E +V+ HIS LR K+ N Sbjct: 155 LSLTPREYDLLLYFAQRLGRVIDRETILTAVWG-YEYTGESRMVDMHISNLRDKIESNPK 213 Query: 206 GFDPVDSKRFLGYSI 220 + + R GY++ Sbjct: 214 APKILKTVRGFGYTM 228 >gi|260904263|ref|ZP_05912585.1| two-component response regulator [Brevibacterium linens BL2] Length = 251 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 5/112 (4%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFPL 149 G DD V KP E++AR+ A+ RR + N G + + D + G + L Sbjct: 104 GGDDYVTKPFSLEEVVARIRAVLRRTRSLEDEENAVIMAGDLELDDDTHEVRRSGILIDL 163 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E ++L YLM N + ++K+QI ++ +D + +VES+IS LR+K+ Sbjct: 164 SPTEFKLLRYLMLNTNRVLSKSQILDHVWE-YDFGGDTGIVESYISYLRRKI 214 >gi|322833865|ref|YP_004213892.1| transcriptional regulator [Rahnella sp. Y9602] gi|321169066|gb|ADW74765.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 229 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 20/161 (12%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R S +P+I +S + + D+G DD + KP E+LARV RR Sbjct: 69 RDLRHWSAIPIIVLSARTREEDKIAALDAGADDFLTKPFGVGELLARVRVALRR---HTG 125 Query: 125 RAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A+ P+ FSD R + G+ L E R+L L+AN GK + + Q+ S ++ Sbjct: 126 SAQESPLVTFSDVTVDLINRRVQRNGDDCHLTPIEFRLLAELLANSGKVITQRQLLSHVW 185 Query: 179 GLFDEAVEENVVESHISKLR---KKLRNKLGFDPVDSKRFL 216 G N VE H LR LR KL D + L Sbjct: 186 G-------PNYVE-HSHYLRIYMGHLRQKLEADATRPRHLL 218 >gi|299139099|ref|ZP_07032275.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298598779|gb|EFI54941.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 238 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 20/167 (11%) Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 ++L R +R H S VP+I ++ S + + G DD + KP RE++ARV A+ R Sbjct: 62 MDLCRRLRQHPTLSGVPVIFLTARASENDRVHGLELGADDYITKPFGTRELVARVRAVLR 121 Query: 118 RLKVSNNRAETGPIRVFS------DGRDPE--VQGEVFPLPRRERRILEYLMANRGKRVA 169 R + S GP+ + DG + V+GE+ P E R+L+YL + + + Sbjct: 122 RFEPSEA---PGPLSIVKIEEIEIDGSAMQLRVKGELVPTTATEFRLLDYLARHPARVFS 178 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + Q+ A++G V + +++R K+ DP ++ R+L Sbjct: 179 RDQLLDAVWG-----DARFVTPRSVDVYVRRIREKVEADP-ETPRYL 219 >gi|295707319|ref|YP_003600394.1| two-component response regulator WalR [Bacillus megaterium DSM 319] gi|294804978|gb|ADF42044.1| two-component response regulator WalR [Bacillus megaterium DSM 319] Length = 235 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/202 (26%), Positives = 92/202 (45%), Gaps = 20/202 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY DGV +LE E +Q ++ ++ L K +E+ R +R Sbjct: 22 LQKEGYEVFCAYDGV-----EALEKVEEVQP----EMILLDIMLPQKDG--MEVCREVRK 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRA 126 +P+I ++ S + + G DD V KP RE+LARV A RR + V + Sbjct: 71 KYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQVAVPTEES 130 Query: 127 ET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ET G + + D +GE L RE +L YL + G+ + + + ++G + Sbjct: 131 ETNEITIGALVIHPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHLLQTVWG-Y 189 Query: 182 DEAVEENVVESHISKLRKKLRN 203 D + V+ + +LR+K+ + Sbjct: 190 DYFGDVRTVDVTVRRLREKIED 211 >gi|294665023|ref|ZP_06730331.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605214|gb|EFF48557.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 233 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 2/130 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPI 131 P++ ++ ++ + D G DD + KP RE AR + RR + ++ + G Sbjct: 73 TPVLVLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRRNRGQASEVVQIGGF 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + G LP RE R+ E L+ G+ V K +I + ++G FD+ N +E Sbjct: 133 VFDNAAHTLLLDGVPIELPNREYRLFEILIGRLGQVVGKDEIGNGLFG-FDDDAGPNAIE 191 Query: 192 SHISKLRKKL 201 ++ +LR+KL Sbjct: 192 LYVGRLRRKL 201 >gi|239928546|ref|ZP_04685499.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291436871|ref|ZP_06576261.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291339766|gb|EFE66722.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 228 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 10/160 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124 IR + P+I ++ +++ + + G DD V KP E+LAR+ A+ RR + + Sbjct: 68 IRKRTSTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRRTVHEETTG 127 Query: 125 RAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 AE GP+R+ R V V L R+E +L L G + QI S ++ Sbjct: 128 AAEAELRLGPVRIELPTRQVSVNDSVVQLTRKEFDLLALLAQRPGVVFRREQIISEVWRT 187 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E +E H++ LR KLR + V R +GY + Sbjct: 188 SWEGTGRT-LEVHVASLRAKLRMPALIETV---RGVGYRL 223 >gi|258515258|ref|YP_003191480.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778963|gb|ACV62857.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 227 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 3/149 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ L + IR S P+I I+ +++ L F G DD + KP E++ARV A+ Sbjct: 57 GQDGLSVLEKIRKTSTCPVIVITARGAVKDRLQGFHLGADDYIAKPFDPDEVVARVKAVL 116 Query: 117 RRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR V + + G + V + ++G L RR+ +L +L+ + + ++TQ+ Sbjct: 117 RRPARIVEADLVQFGHLTVDFTSCNAVLKGRNISLARRDWDLLSFLVRHPNQVFSRTQLL 176 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++G+ D + V+ + +LR+ L++ Sbjct: 177 DYVWGI-DYDGGDRAVDVAVKRLRQALKD 204 >gi|229169817|ref|ZP_04297514.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228613667|gb|EEK70795.1| DNA-binding response regulator [Bacillus cereus AH621] Length = 223 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 82/161 (50%), Gaps = 7/161 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S+VP+I +S + + + G DD V KP + ++A++ A+ RR S Sbjct: 64 RKIREVSKVPIIFLSSRDNPMDMVMAMNMGGDDFVQKPFYTDVLVAKIQALMRR-TYSYT 122 Query: 125 RAETGPIR---VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ET + V + + EV ++ L + E +IL+ LM N G V++ I ++ Sbjct: 123 QTETNVVEHEGVVLNLQTGEVTYHNQILELTKNEFKILQMLMQNIGAIVSRDNIMRKLWE 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + V++N + +++++RKKL + + +K+ GY I Sbjct: 183 -NESFVDDNTLTVNVARVRKKLAELGKEEFIHTKKGQGYII 222 >gi|227874637|ref|ZP_03992800.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|306817923|ref|ZP_07451661.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|227844846|gb|EEJ54992.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|304649266|gb|EFM46553.1| response regulator [Mobiluncus mulieris ATCC 35239] Length = 267 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 77/167 (46%), Gaps = 24/167 (14%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L++ R IRA +P++ ++ + DSG DD V KP E+LARV A+ RR Sbjct: 101 LDVARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRRA 160 Query: 119 ---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 ++ + R E R F R+ ++ + F L L L+ + G V+ Sbjct: 161 GGEVTEDEIIECQDVRVEVAAHRAFQGERELQLTAKEFDL-------LRVLIRDAGSVVS 213 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + Q+ ++G D + ++ H+S LR+KL D +S R++ Sbjct: 214 REQVMREVWG-SDPSGSTKTLDMHVSWLRRKL-----GDDANSPRYI 254 >gi|225028064|ref|ZP_03717256.1| hypothetical protein EUBHAL_02333 [Eubacterium hallii DSM 3353] gi|224954612|gb|EEG35821.1| hypothetical protein EUBHAL_02333 [Eubacterium hallii DSM 3353] Length = 236 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 27/207 (13%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKVLELPRIIR 68 LV DGY L DG E+ LQ+ +V + ++ G LE+ R IR Sbjct: 24 LVNDGYQVLKASDG-----------EQCLQTLKEHPEVRMLILDIMMPGIDGLEVCREIR 72 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV------- 121 S +P++ +S + F +G DD + KP H E+LARV + +R Sbjct: 73 KTSNIPILILSAKAEDMDKIVGFGTGADDYLTKPFHPLELLARVKSQMKRYTTIQLGEEQ 132 Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + E + + + G+ L E IL L +NR + + +IF ++ Sbjct: 133 QPASKDEIEIQDLTINKAAHVVKKNGKEVALTPIEFDILYLLASNRDRVFSTDEIFEKVW 192 Query: 179 GLFDEAVEE--NVVESHISKLRKKLRN 203 +E V E N V HI +LR+K+ + Sbjct: 193 ---NEKVYEVNNTVMVHIRRLREKIED 216 >gi|188590529|ref|YP_001922225.1| two component transcriptional regulator, winged helix family [Clostridium botulinum E3 str. Alaska E43] gi|188500810|gb|ACD53946.1| two component transcriptional regulator, winged helix family [Clostridium botulinum E3 str. Alaska E43] Length = 224 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 14/160 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I S + + G DD + KP I+A+V A+ RR + Sbjct: 67 IRKISKVPIIFASSASDNMNLIMAINMGADDFIAKPFDLNVIVAKVQALIRR-----TYS 121 Query: 127 ETGPIRVF-SDGR-----DPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G I + S+G D + + L + E +IL+ L+ N+ K V++ I + ++ Sbjct: 122 FQGQINILESNGAVLNLGDTTITYNDKKLELSKNEFKILQILLENKNKAVSRDDIMTHLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +++N + ++++LR+KL + D + +K+ +GY Sbjct: 182 N-SDSFIDDNTLTVNVTRLRRKLEDINLKDFIKTKKGMGY 220 >gi|168185636|ref|ZP_02620271.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] gi|169296321|gb|EDS78454.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] Length = 227 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 9/140 (6%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VSN-- 123 +S++P++ +S + L G DD + KP RE++ R+ AI RR+ +SN Sbjct: 70 NSEIPIVVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRINKAKLLSNKK 129 Query: 124 --NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N E G I++ D R + + E IL ++ N K + ++ I+G + Sbjct: 130 QVNIIEKGFIKIMKDERRVFIDSKEVIFTHIEFEILVLMVKNSYKVFTREELLDTIWG-Y 188 Query: 182 DEAVEENVVESHISKLRKKL 201 D + V+ HI ++RKKL Sbjct: 189 DFSGNTRAVDIHIKRIRKKL 208 >gi|164688214|ref|ZP_02212242.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM 16795] gi|164602627|gb|EDQ96092.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM 16795] Length = 237 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 25/223 (11%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L+ +GY + DG +E L EDV + ++ +E+ + +R Sbjct: 28 LLNEGYKVVKAKDG-----------QEALDIIENEDVDLLVLDIMMPKVNGIEVCKKVRQ 76 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRA 126 + +P++ +S + +G DD + KP + E RV A+ RR L +N+ Sbjct: 77 NKNMPILMLSAKSEDMDKIQGLMTGADDYMTKPFNPLEFTVRVKALLRRSYYLNNNNSSE 136 Query: 127 ETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY--G 179 E+ I V S D GE L RE IL + +N+G+ + +IF ++ Sbjct: 137 ESDLINVGSLTIDKTRHRVVADGEEISLTAREFDILYLMASNKGRVFSSEEIFEKVWKEK 196 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 F N V HIS+LR KL L G + + +GY I+ Sbjct: 197 YFQ---SNNTVMVHISRLRDKLDKHLNGEKIIHTVWGVGYKIE 236 >gi|153940472|ref|YP_001390134.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936368|gb|ABS41866.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318224|gb|ADF98601.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 230 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 6/145 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 EL IR +P+I IS ++ G DD + KP E+ AR+ + RR K Sbjct: 65 ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124 Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + I + D R+ + + L RE IL+ LM K K+ +F + Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++ + ++N + HIS LR KL Sbjct: 185 VWS-SEYLCDDNTINVHISNLRNKL 208 >gi|134291059|ref|YP_001114828.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134248|gb|ABO58573.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 239 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 22/198 (11%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQ 85 EG LE W A+ L+ G LE+ R RA ++ P+I S S Sbjct: 39 EGLRLLEQGNW---------DALILDLMLPGVDGLEICRRARAMTRYTPIIITSARSSEV 89 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDP--- 140 + + G DD + KP E++ARV A+ RR+ ++R + G + V DP Sbjct: 90 HRILGLELGADDYLAKPFSVLELVARVKALLRRVDALARDSRLDAGTLDVAGLSIDPIAR 149 Query: 141 --EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 V G L RE +L + + GK ++ + +A++G E E+ V +HI++LR Sbjct: 150 EASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLLNAVWGYRHEGY-EHTVNTHINRLR 208 Query: 199 KKLRNKLGFDPVDSKRFL 216 K+ DP + R L Sbjct: 209 AKIEA----DPAEPVRIL 222 >gi|126737842|ref|ZP_01753572.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. SK209-2-6] gi|126721235|gb|EBA17939.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. SK209-2-6] Length = 229 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 80/165 (48%), Gaps = 6/165 (3%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R +++ ++ +P+I +S + ++G DD V KP E++ARV R Sbjct: 65 IEVCRRLKSRTETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELVARVRTQLR 124 Query: 118 RLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + S R E G I + ++ ++ L E R+L M G+ ++ Q+ Sbjct: 125 RSRPSAVGLRLEYGDIVLDAETHRVSRSDQMLKLGPTEFRLLSTFMEKPGRVWSREQLLD 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V+ V+ HI +LRK L G DPV + R GY++ Sbjct: 185 RVWG-RDIYVDTRTVDVHIGRLRKALTQFGGDDPVRTVRGAGYAL 228 >gi|158319899|ref|YP_001512406.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140098|gb|ABW18410.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 231 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 6/146 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR S+VP++ +S + + D+G DD + KP H E+LAR+ + R+LK Sbjct: 64 IDIIKSIRMISEVPILIVSARGEEKEKISALDAGADDYITKPFHMGELLARIRVVERKLK 123 Query: 121 --VSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 V + AE + + + R V + L E ++L L+ N+GK + I Sbjct: 124 KAVQGDNAEIFQLDYLTIDYERRMVLVDHKEIHLTPIEYKLLLLLVENKGKVLTHNYILK 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 I+G + E + + ++ LR+K+ Sbjct: 184 KIWG-YGETGDSKSIRVFMANLRRKI 208 >gi|42523251|ref|NP_968631.1| two-component response regulator KdpE [Bdellovibrio bacteriovorus HD100] gi|39575456|emb|CAE79624.1| two-component response regulator KdpE [Bdellovibrio bacteriovorus HD100] Length = 230 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 10/142 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R+ S+VP+I ++ S + D G DD + KP E+L R+ R N A Sbjct: 71 LRSWSKVPVIVLTVQDSDNDKIAALDGGADDYITKPFSVPELLVRMRVALRH--SPQNAA 128 Query: 127 E-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 E +GP++V G V+GE+ L E IL+ L+ N+ K V + + ++G Sbjct: 129 EKTEMVSGPLKVDVPGHTVTVEGELVKLTATEFNILKVLIKNKDKVVTHRMLLNEVWG-- 186 Query: 182 DEAVEE-NVVESHISKLRKKLR 202 +VE + + ++ LRKKL Sbjct: 187 PNSVEHTHYLRVYVGGLRKKLH 208 >gi|325473570|gb|EGC76762.1| response regulator [Treponema denticola F0402] Length = 232 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 4/158 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR SQVP+I +S + G DD + KP +A++ A+ RR S Sbjct: 70 IRNKSQVPIIFLSSRNDKMDIVMAMQMGGDDYIEKPFDMDVTIAKIQAVIRRTYQFTASM 129 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N + + L E +IL+ L +G+ V++ +I ++ ++ Sbjct: 130 NEVGFAGTVLNLSTLTLVYNNKTTLLTANEIKILKCLYLAQGEFVSREKIMDVLWQ-NNQ 188 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V++N + +I++LRKKL N F+ +++K+ LGY ++ Sbjct: 189 FVDDNTLSVNITRLRKKLENAGLFNFIENKKGLGYKLN 226 >gi|300921717|ref|ZP_07137883.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|301329917|ref|ZP_07222638.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|300421855|gb|EFK05166.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300844016|gb|EFK71776.1| response regulator receiver domain protein [Escherichia coli MS 78-1] Length = 240 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 8/156 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGIDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167 I RR K + AE+ P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ + + +Y + V + ++SHI LR+KL + Sbjct: 180 FSREHLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|291615861|ref|YP_003518603.1| QseB [Pantoea ananatis LMG 20103] gi|291150891|gb|ADD75475.1| QseB [Pantoea ananatis LMG 20103] Length = 228 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 18/204 (8%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPR------IIRAHSQ---VPLIG 77 +LE W R+ V A A+ G VL LPR + RA + P++ Sbjct: 27 QALEAAGWSVDWVRDGVYAQNAWSEGGYSCVLLDLGLPRDDGLQVLRRARGRGDATPVLI 86 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSD 136 ++ ++ + D G DD + KP +E++AR+ AI RR S + +G +++ Sbjct: 87 LTARDTVAQRVQGLDYGADDYLLKPFDLQEVMARMRAITRRHHGSADSVLGSGDVQLDML 146 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 R+ +G+ L RE +L L+ G +++ Q+ + IYG + E V N V+ I Sbjct: 147 TREVLYKGQREQLTAREYALLYALLERPGAILSREQLENRIYG-WGEEVSSNAVDVLIHG 205 Query: 197 LRKKLRNKLGFDPVDSKRFLGYSI 220 +R+KL N D + + R LG+ + Sbjct: 206 MRRKLDN----DVIRNVRGLGWRV 225 >gi|229098913|ref|ZP_04229848.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229105077|ref|ZP_04235728.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228678258|gb|EEL32484.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228684411|gb|EEL38354.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 235 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 15/170 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 125 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI--DWN 223 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ +W+ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYALLTEWS 230 >gi|255102528|ref|ZP_05331505.1| two-component system, response regulator [Clostridium difficile QCD-63q42] Length = 217 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/161 (22%), Positives = 81/161 (50%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S +P++ ++ + + +D F + VD V KP + R+ ++ ++ Sbjct: 59 LEVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKVRIDSLIKKNY 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E + V + ++ GE + +E +L+ L+ N G+ + + QI ++ Sbjct: 119 GHLEKFEYKDLSVNFNSYTAKINGEEIDVNAKELDVLKCLLDNDGQVLTRMQIIDYVWKD 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL+ D + + R +GY ++ Sbjct: 179 SEEIPYDRVIDVYIKELRKKLQ----LDCITTIRNVGYKLE 215 >gi|297582600|ref|YP_003698380.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141057|gb|ADH97814.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 240 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/139 (23%), Positives = 68/139 (48%), Gaps = 3/139 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124 IR S P++ ++ L L FD G DD + KP H E++AR+AA+ +R + + Sbjct: 81 IRERSDCPVVMLTALDELDDRLKGFDGGADDYIAKPFHGEEVVARIAAVLKRQPSEEKTD 140 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E G + + R + G+ L ++ +L +L + + ++ ++ ++G +D Sbjct: 141 AMEFGDLEIRDGERRVYLSGKQVELTPKDTALLIHLAKHPNRVWSRDELIEHVWG-WDYT 199 Query: 185 VEENVVESHISKLRKKLRN 203 + V+ + ++R+ LR Sbjct: 200 GSDRAVDLAVKRIRQALRK 218 >gi|42783577|ref|NP_980824.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42739506|gb|AAS43432.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 235 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 125 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225 >gi|83745654|ref|ZP_00942712.1| Hypothetical Protein RRSL_04718 [Ralstonia solanacearum UW551] gi|83727731|gb|EAP74851.1| Hypothetical Protein RRSL_04718 [Ralstonia solanacearum UW551] Length = 245 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 3/170 (1%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G+ LE+ R +RA S +P++ ++ L + G DD + KP RE++AR+ Sbjct: 77 LMLPGKDGLEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARI 136 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 I RR++ + E+ + + + ++G+ L E R+L L G+ +++ Sbjct: 137 KTILRRVQRGGAQPES-LLLIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRAN 195 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + IY V + V++H+ LR+K+ G + + S +GY +D Sbjct: 196 LLEQIYD-DHRIVTDRTVDTHVKNLRRKMELVSPGTEMIHSVYGVGYRLD 244 >gi|148547536|ref|YP_001267638.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148511594|gb|ABQ78454.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 233 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 11/172 (6%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+L R++R SQ +P++ ++ + + G DD V KP R +LARV + RR Sbjct: 61 LQLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRS 120 Query: 120 KVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V+ R E G +R+ R +GE L E +L L N G+ + + +I Sbjct: 121 SVNEPRLENDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGEVMNRDRIL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222 + G+ + + V+ ISKLR+K + G V K +L ++W Sbjct: 181 QQLRGIEFNGTDRS-VDVAISKLRRKFDDNAGEARKIKTVWGKGYLFSRVEW 231 >gi|332306728|ref|YP_004434579.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174057|gb|AEE23311.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 224 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 2/148 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ ++ +L L+ F++G DD + KP +E++AR+ + RR R G + Sbjct: 74 TPVLMLTARDTLDNKLEGFNAGSDDYLVKPFAMQELIARIQVLGRRRSGETKRLMVGGLT 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + R + + L ILE LM + V + I ++G D+ + N ++ Sbjct: 134 LDLTQRIATLNQQPLKLSPTALAILEVLMRASPQTVTRQHIIQTVWG--DDQPDSNSLKV 191 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGYSI 220 HI LRK+L +D+ +G++I Sbjct: 192 HIYHLRKQLERYESSISLDTIASVGFAI 219 >gi|326692618|ref|ZP_08229623.1| DNA-binding response regulator [Leuconostoc argentinum KCTC 3773] Length = 210 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 16/205 (7%) Query: 18 LFGDDGVSLEGF--NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP-------- 64 L +D +SL+ + N L FE + A + + G+ VL LP Sbjct: 5 LIIEDEMSLQFYLKNELTFEGYTVLQAFDGQQGLALLASETGDAVLLDWMLPKKSGMAVL 64 Query: 65 RIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVS 122 R +R +Q +P+I ++ L + D+G DD + KP E+LAR+ + RR + Sbjct: 65 RHVRQTNQTLPVILMTAKSELDDKVMGLDNGADDYLTKPFETEELLARLRVVLRRQVAPV 124 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 E + + + + ++ L +RE +L +LM + G+ V++ I ++G+ D Sbjct: 125 QTTFEVADLTLNTTTHRVQRGDQLIALTQREFDLLAFLMQHEGQVVSRDAILDHVWGI-D 183 Query: 183 EAVEENVVESHISKLRKKLRNKLGF 207 A + N V+ +I LR+K+ L Sbjct: 184 FAGQYNTVDVNIHHLRQKIELALAL 208 >gi|229134252|ref|ZP_04263067.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228649182|gb|EEL05202.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] Length = 233 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126 RA+ +PL+ ++ + F+ G DD + KP E+ RV A+ +R K+ S Sbjct: 78 RANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIGSTQTI 137 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + E LP +E +L L G+ + Q+ I+G+ D A + Sbjct: 138 HLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGI-DYAGD 196 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V+ HI +LR++ F +++ R LGY ++ Sbjct: 197 DRTVDVHIKRLRERFATTHDFR-IETVRGLGYRLE 230 >gi|227114540|ref|ZP_03828196.1| two-component system response regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 226 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 11/204 (5%) Query: 27 EGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EGF++ L +E + + D +A+ ++ +++ R IR Q+P+I ++ Sbjct: 23 EGFSTSRVLTGKEGVDGAISGDYTAMILDVMLPDMSGIDVLRQIRKTQQLPVIMLTARGD 82 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVSNNRAETGPIRVFSDG 137 + + G DD + KP + RE++AR+ A+ RR K + A +G + + Sbjct: 83 NIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRYDDQPSTKRDESLAASGDLVLNPAT 142 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 R E +G+ F L E +LE L+ + + V+K ++ G EA + + V+ HIS + Sbjct: 143 RISEWRGKPFDLTASEFNLLELLLRSPERVVSKDELSEKCLGRRREAYDRS-VDVHISNI 201 Query: 198 RKKLRNKLGFD-PVDSKRFLGYSI 220 R+KL G +++ R +GY I Sbjct: 202 RQKLGALPGNTMTIETVRSVGYRI 225 >gi|207724835|ref|YP_002255232.1| two-component response regulator protein [Ralstonia solanacearum MolK2] gi|207739498|ref|YP_002257891.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] gi|206590060|emb|CAQ37021.1| two-component response regulator protein [Ralstonia solanacearum MolK2] gi|206592877|emb|CAQ59783.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] Length = 222 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 3/170 (1%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G+ LE+ R +RA S +P++ ++ L + G DD + KP RE++AR+ Sbjct: 54 LMLPGKDGLEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARI 113 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 I RR++ + E+ + + + ++G+ L E R+L L G+ +++ Sbjct: 114 KTILRRVQRGGAQPES-LLLIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRAN 172 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + IY V + V++H+ LR+K+ G + + S +GY +D Sbjct: 173 LLEQIYD-DHRIVTDRTVDTHVKNLRRKMELVSPGTEMIHSVYGVGYRLD 221 >gi|71280052|ref|YP_267764.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] gi|71145792|gb|AAZ26265.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] Length = 256 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 76/146 (52%), Gaps = 6/146 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +RA L+ +S S + ++ F GVDD + KPI R ++ R+ A++RR + Sbjct: 87 LLIIRDLRALFDGLLVIVSSKNSEKEQVEAFKLGVDDYLLKPIDSRILMMRIEALFRRQR 146 Query: 121 VSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N+ E + + P+ Q GEV L E +L+ L+ ++GK +++ Q++S Sbjct: 147 HKINQVELASLTMGDVCLQPKSQKCFINGEVVKLTTFEFNLLKSLVEHQGKILSRDQLYS 206 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 + VE ++ +S+LR+KL Sbjct: 207 TLLRRVYNGVER-TLDVRMSQLREKL 231 >gi|13473757|ref|NP_105325.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14024508|dbj|BAB51111.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 227 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 5/155 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-- 126 A + P I ++ + ++ ++G DD + KP E+LAR+ A+ RR + Sbjct: 69 AGVRTPAIFLTSIGGIDDRVEGLEAGGDDYLVKPFAFSELLARINALGRRPAAQEQKTVL 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 + + R QG+ L RE +LE LM G+ + +T + ++ FD Sbjct: 129 RVADLEMDLIMRRVTRQGQPIDLQPREFSLLEVLMRGEGRVITRTMLLERVWDFHFDP-- 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +VVE+HIS+LR K+ + + R GYS+ Sbjct: 187 KTSVVETHISRLRAKVDKPFEAQLIHTIRNTGYSL 221 >gi|329296063|ref|ZP_08253399.1| winged helix family two component transcriptional regulator [Plautia stali symbiont] Length = 224 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 72/160 (45%), Gaps = 19/160 (11%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R S +P+I +S Q ++ D+G DD + KP E+LARV RR + Sbjct: 65 REVRQWSSMPVIVLSARSDEQDKIEALDAGADDYLTKPFGIGELLARVRVALRR----HQ 120 Query: 125 RAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R++ P+ F + R GE L E R+L L+ N GK + + Q+ + ++ Sbjct: 121 RSQPEPLVQFGEVSVDLAARHVLRSGEEVHLTPTEFRLLSLLLNNAGKMLTQRQLLNQVW 180 Query: 179 GLFDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216 G N VE SH ++ LR KL +P L Sbjct: 181 G-------PNAVEHSHYLRIYMGHLRQKLEANPTQPTHLL 213 >gi|327405853|ref|YP_004346691.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327321361|gb|AEA45853.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 227 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 9/141 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR SQVP++ ++ + + DSG DD + KP E+ ARV ++ RR + N Sbjct: 67 IRETSQVPILMLTALGTPENVALGLDSGADDYLPKPFKFIELNARVRSLLRR--IENQVT 124 Query: 127 ETGPIRVFS-----DGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + FS D R ++ G + L E R+L M + K ++ I ++G+ Sbjct: 125 ASSTLFSFSDLVIDDDRKTVIRNGHLITLTSTEYRLLLLFMMSPKKVFSRIDILEEVWGI 184 Query: 181 FDEAVEENVVESHISKLRKKL 201 D NVV+ +++ LRKKL Sbjct: 185 -DFESGTNVVDVYVNYLRKKL 204 >gi|307312356|ref|ZP_07591990.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|306907527|gb|EFN38030.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|315061354|gb|ADT75681.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli W] gi|320198770|gb|EFW73370.1| Response regulator BaeR [Escherichia coli EC4100B] gi|323183860|gb|EFZ69251.1| transcriptional regulatory protein baeR [Escherichia coli 1357] gi|323378066|gb|ADX50334.1| two component transcriptional regulator, winged helix family [Escherichia coli KO11] Length = 240 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 8/156 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGIDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167 I RR K + AE+ P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ + + +Y + V + ++SHI LR+KL + Sbjct: 180 FSREHLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|300119329|ref|ZP_07057007.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298723284|gb|EFI64048.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 231 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 13/207 (6%) Query: 27 EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+N + + +E LQ + +V + ++ LE+ + +R ++ VP++ +S Sbjct: 25 EGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAETGPIRVFS----- 135 + +G DD + KP + E++ARV A+ RR N + E G IR+ S Sbjct: 85 DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNASSPKNEDGMIRIRSAEIHK 144 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 +V GE L E IL L +N G+ + +IF ++ D V HIS Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203 Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221 LR KL + G + + +GY I+ Sbjct: 204 NLRDKLETVMNGEKFIHTVWGVGYKIE 230 >gi|292486824|ref|YP_003529694.1| putative transcriptional regulator Ycf27 [Erwinia amylovora CFBP1430] gi|291552241|emb|CBA19278.1| probable transcriptional regulator ycf27 [Erwinia amylovora CFBP1430] gi|312170892|emb|CBX79151.1| probable transcriptional regulator ycf27 [Erwinia amylovora ATCC BAA-2158] Length = 251 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 101/222 (45%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++++D L++ G +AL G+ N+ + +LQS V G + Sbjct: 35 ILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGLPDRDGADL 94 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R + +P++ +S +L +D D+G DD + KP E+ ARV A+ RR + Sbjct: 95 LRQWR--KEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRRYQ 152 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+N + G I + + V + + +E +L L+ G+ V + + +Y Sbjct: 153 GQSDNLLQHGDITLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 212 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D+ N +E H+ LR+ KLG D + + R +GY ++ Sbjct: 213 WQDD-TSSNTLEVHMHNLRR----KLGKDRIKTVRGVGYRLE 249 >gi|262371688|ref|ZP_06064967.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262311713|gb|EEY92798.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 227 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 3/142 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +R S +P+I ++ + + G DD + KP +E++ARV A+ RRL+ Sbjct: 61 LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLRRLE 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 121 RKAEPEQNDLFRIDKAQQRIWYQQKALTLTPTEFRLLELFLEHLGQVYSRAQLLDHINPD 180 Query: 180 LFDEAVEENVVESHISKLRKKL 201 FD V + V++SHI LR+K+ Sbjct: 181 SFD--VADRVIDSHIKNLRRKI 200 >gi|260687106|ref|YP_003218240.1| two-component response regulator [Clostridium difficile R20291] gi|260213123|emb|CBE04540.1| two-component response regulator [Clostridium difficile R20291] Length = 247 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 17/146 (11%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +P++ + + + +G DD + KP E++AR+A++ RR N +A Sbjct: 84 IRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNQQA 143 Query: 127 ETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G I+ + + R F LP +E +L Y ++GK + K QI+ ++ Sbjct: 144 --GAIQKLNFDGLQIDLENRSATTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVW 201 Query: 179 G---LFDEAVEENVVESHISKLRKKL 201 G +D++ N++ + IS+LRKKL Sbjct: 202 GEEYFYDDS---NIM-AIISRLRKKL 223 >gi|254694764|ref|ZP_05156592.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 3 str. Tulya] gi|261215091|ref|ZP_05929372.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260916698|gb|EEX83559.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] Length = 228 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 20/171 (11%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + G DD V KP E+LARV A+ R Sbjct: 64 IELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 123 Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R LKV + + RV+ ++ EV L E R+LEY M + G+ Sbjct: 124 RANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSPGRVF 176 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +++Q+ ++G D V++ V+ H+ +LRK + D + + R GYS Sbjct: 177 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKAINVGRAADSIRTVRGAGYS 226 >gi|228959449|ref|ZP_04121138.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800225|gb|EEM47153.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 225 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 69 IRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHRTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|228988342|ref|ZP_04148435.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771407|gb|EEM19880.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 223 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 82/161 (50%), Gaps = 7/161 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S+VP+I +S + + + G DD V KP + ++A++ A+ RR S Sbjct: 64 RKIREVSKVPIIFLSSRDNPMDMVMAMNMGGDDFVQKPFYTDVLVAKIQALMRR-TYSYT 122 Query: 125 RAETGPIR---VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ET + V + + EV ++ L + E +IL+ LM N G V++ I ++ Sbjct: 123 QTETNVVEYEGVVLNLQSGEVTYHNQILELTKNEFKILQVLMQNVGSIVSRDNIMRKLWE 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + V++N + +++++RKKL + + +K+ GY I Sbjct: 183 -NESFVDDNTLTVNVARVRKKLAELGKEEFIHTKKGQGYII 222 >gi|227890323|ref|ZP_04008128.1| two component response regulator [Lactobacillus johnsonii ATCC 33200] gi|227849137|gb|EEJ59223.1| two component response regulator [Lactobacillus johnsonii ATCC 33200] Length = 221 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 3/114 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 DSG DD + KP +E+LAR+ + RR + + N E G + + V L Sbjct: 91 LDSGADDYLTKPFSLKELLARLRSKERRDDQYTPNEVEVGDL-ALNVAEQELVSHNSIRL 149 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 +E ++L YLM N GK + + + + ++ DE E+VV +IS LR+KL++ Sbjct: 150 GSKETQLLNYLMLNEGKEFSTSDLLAHVWKDDDET-SEDVVWIYISYLRQKLQS 202 >gi|226364525|ref|YP_002782307.1| OmpR family two-component response regulator [Rhodococcus opacus B4] gi|226243014|dbj|BAH53362.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] Length = 228 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 103/231 (44%), Gaps = 22/231 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ A +G + + + +++ DV ++ L G L Sbjct: 6 VLVVDDEATIREAVAARLRAEGFDVVTASDGPAAVTVCAASSPDVLVLDVML--PGFDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++A VP++ ++ L G DD ++KP R ++ARV A+ RR Sbjct: 64 EVCRRVQASRPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVHALLRRADR 123 Query: 122 SNNR--AETGPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAK 170 ++ AE G + V D EV + L R E +L Y + +A+ Sbjct: 124 AHEAVPAERGGLAVG----DLEVDLVERRVRRGADEIHLTRTEFDLLAYFASRPRAAIAR 179 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + ++G D A V+SH+ K LR KLG D + + +GY++D Sbjct: 180 ESLLAEVWGWGDGA-GSRTVDSHV----KALRRKLGGDLIRTVHGVGYALD 225 >gi|170758492|ref|YP_001786348.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree] gi|169405481|gb|ACA53892.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree] Length = 228 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 16/165 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---- 122 +R SQVP+I I+ + F G DD + KP E+ R+ AI RR V+ Sbjct: 67 LREISQVPVIMITAKGQQSDKVLGFIKGCDDYLVKPFDLTELSFRIRAILRRTNVTHKKD 126 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N++ + + D G+ L ++E IL L +N+GK + + I+ ++ D Sbjct: 127 NDKIYINDLEIIVDEFTVLKNGQRLKLTKKEFEILVLLASNKGKVFSPSVIYETLWN--D 184 Query: 183 EAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221 +E +N V +HI + LR K+G +SK +GYSI+ Sbjct: 185 SYIENDNSVLTHI----RNLREKIGDRAKNSKYIKTIWGVGYSIE 225 >gi|24379907|ref|NP_721862.1| putative response regulator CovR; VicR-like protein [Streptococcus mutans UA159] gi|290580113|ref|YP_003484505.1| putative response regulator [Streptococcus mutans NN2025] gi|14600271|gb|AAK71319.1|AF393849_1 responder protein CovR [Streptococcus mutans] gi|24377886|gb|AAN59168.1|AE014984_3 putative response regulator CovR; VicR-like protein [Streptococcus mutans UA159] gi|254997012|dbj|BAH87613.1| putative response regulator [Streptococcus mutans NN2025] Length = 235 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 12/154 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + +R +S VP+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 61 LEVAKEVRKNSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120 Query: 121 -VSNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + + AE G +++ D + +G L RE +L +L + G+ + Sbjct: 121 NIESAVAEENASGIPEIIIGDLQILPDAFVAKKRGTEVELTHREFELLHHLATHTGQVMT 180 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ + +LR+K+ + Sbjct: 181 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 213 >gi|94313647|ref|YP_586856.1| putative two component transcriptional regulator, winged helix family [Cupriavidus metallidurans CH34] gi|93357499|gb|ABF11587.1| Putative two component transcriptional regulator, winged helix family [Cupriavidus metallidurans CH34] Length = 261 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 15/180 (8%) Query: 26 LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQ 85 ++G +E L D+SAI+ V+ R +R + VP++ + + Sbjct: 41 IQGLGHDTYEMLLIDRELADISAID---------VIRTVRAVR-NRDVPIVIFASENNDD 90 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPE 141 ++ D+G DD V +P+ R +LAR+AA+ RR+ + R GP + + GR Sbjct: 91 DLVEALDAGADDYVLRPLAARVLLARIAALRRRMSGTRLRGAMPLRAGPYELSNPGRYAT 150 Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + G P+ +E + + AN G+ +A +I I+G D + +S++R+ L Sbjct: 151 LNGGRIPMTPKEFDLAMLMFANAGRILASRRIEHTIWG-HDLPPYSRALAGLVSRMRRTL 209 >gi|326387405|ref|ZP_08209014.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326208061|gb|EGD58869.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 263 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/230 (27%), Positives = 97/230 (42%), Gaps = 35/230 (15%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-SSAREDVSAIEAFLIGKGEKVLE 62 L+ RAL GY D G + G E W+ S D+ ++ L G+ +E Sbjct: 45 LLTARALRAHGY-----DVGTASTGA-----EMWVALESGAVDLIVLDIML--PGQTGIE 92 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R S VP+I IS S + + G DD + KP RE++AR+ A+ RR + Sbjct: 93 LFRRLRRDSDVPVIFISARGSEDDRVLGLELGADDYLPKPFGTRELIARIGAVLRRGQAE 152 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA--------------NRGKRV 168 + R P R GRD E G L R E R + + N+ +RV Sbjct: 153 DER----PAR----GRDLEFDGWRLSLGRHELRSPQGALVDLTGAEFDLLATFLNQPQRV 204 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 Q + + ++ +S+LR+KL G P+ + R +GY Sbjct: 205 IGRQRLIELSRTRQSDSSDRSIDVLVSRLRRKLTGPSGNAPIVTVRGVGY 254 >gi|309799600|ref|ZP_07693826.1| response regulator [Streptococcus infantis SK1302] gi|308116788|gb|EFO54238.1| response regulator [Streptococcus infantis SK1302] Length = 219 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 3/153 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR P++ ++ + +G DD + KP E++ARV A RR + + Sbjct: 66 IRDRVDCPILFLTAKSLESDIVSGLSTGADDYILKPFGVNELIARVDAHLRRENRERHLS 125 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 G IR V + P + E RI E L RG+ ++ QI+ I+G +D Sbjct: 126 LNLGEIRFDLSANMIYVNDKKIPFTKSEYRICELLARRRGQVFSREQIYEMIFG-YDGIG 184 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + HI +R KL+ K G PV + +GY Sbjct: 185 NSSAISEHIKNIRAKLQ-KEGVSPVVTVWGIGY 216 >gi|302339190|ref|YP_003804396.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] gi|301636375|gb|ADK81802.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] Length = 233 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 11/148 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + IR S VPL+ ++ S + F+ G DD V KP +E++ RV A+ +R S Sbjct: 63 LAKTIREFSNVPLMFLTAKDSESDRILGFEMGADDYVTKPFSTKELVLRVQALLKRYTYS 122 Query: 123 NNRAETGPIRVFSDGRDPE---------VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + TG + + E + G L E +IL YL V++ +I Sbjct: 123 RSEL-TGKNSWYCEEHKLEIDQKTHHLLIDGNEAYLTGAEWKILLYLAKQESIVVSRERI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 + F E E V++HI+ LR KL Sbjct: 182 LAECLNYFFEG-SERTVDTHIANLRSKL 208 >gi|229168168|ref|ZP_04295895.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228615263|gb|EEK72361.1| DNA-binding response regulator [Bacillus cereus AH621] Length = 233 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126 RA+ +PL+ ++ + F+ G DD + KP E+ RV A+ +R K+ S Sbjct: 78 RANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIGSTQTI 137 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + E LP +E +L L G+ + Q+ I+G+ D A + Sbjct: 138 HLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGI-DYAGD 196 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V+ HI +LR++ F +++ R LGY ++ Sbjct: 197 DRTVDVHIKRLRERFATTPDFR-IETVRGLGYRLE 230 >gi|194290021|ref|YP_002005928.1| chemotaxis protein CheY [Cupriavidus taiwanensis LMG 19424] gi|193223856|emb|CAQ69865.1| Putative response regulator, CheY family [Cupriavidus taiwanensis LMG 19424] Length = 224 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 77/140 (55%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + + +P++ ++ + S++ + D G DD + KP E+ AR A+ RR Sbjct: 63 LRRLRQRRNPLPVLILTAHGSVEDRVRGLDLGADDYLAKPFDLSELEARARALIRRAHGH 122 Query: 123 NN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ + GP+ S R + G++ PL RER +LE L+ G+ V K + I+G+ Sbjct: 123 DSTQIAFGPLHYDSVSRAFLLHGQLLPLTGRERAVLEVLLLRDGRAVNKGALSEKIFGI- 181 Query: 182 DEAVEENVVESHISKLRKKL 201 DE+V + +E ++ +LRKKL Sbjct: 182 DESVNPDAIEIYVHRLRKKL 201 >gi|187779752|ref|ZP_02996225.1| hypothetical protein CLOSPO_03348 [Clostridium sporogenes ATCC 15579] gi|187773377|gb|EDU37179.1| hypothetical protein CLOSPO_03348 [Clostridium sporogenes ATCC 15579] Length = 219 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 11/151 (7%) Query: 77 GISDYPSLQTTLDFFDS--------GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 G+ D P L T +S G DD + KP E+ ARV A RR Sbjct: 68 GMVDCPILFLTAKTMESDIMFGLGIGGDDYITKPFGVGELKARVNAHLRREHREKRHIFV 127 Query: 129 GPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 +F+ G+V P + E I EYL N G+ +K QI+ A+YG +D + Sbjct: 128 ASDIIFNLSSKEIKIGDVKVPFTKGEYAICEYLARNSGQVFSKEQIYEAVYG-YDGESDS 186 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + HI +R KL+ P+++ +GY Sbjct: 187 SAITEHIKNIRAKLK-VFDMSPIETVWGIGY 216 >gi|89072466|ref|ZP_01159045.1| DNA-binding response regulator [Photobacterium sp. SKA34] gi|89051998|gb|EAR57450.1| DNA-binding response regulator [Photobacterium sp. SKA34] Length = 235 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 7/146 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE + +R ++ P+I IS + D+G +D + KP E+LAR+ + RL Sbjct: 64 LEFTKELRTWTETPIIVISARDKEADKVQALDAGANDYLTKPFGSEELLARI-RVALRLH 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N E R D +Q GE L +E +IL L N GK + QI Sbjct: 123 SHNTATEVSQYRFGDVLLDMAMQTVMYNGESIKLTPKEYKILTLLAKNMGKVLTHKQILK 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 ++G + + V HI++LR K+ Sbjct: 183 EVWG-GNYTEHAHYVRIHIAQLRHKI 207 >gi|114565051|ref|YP_752565.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114336344|gb|ABI73726.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 225 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 16/170 (9%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L++ + IRA H + +I ++ SL+ + D G DD + KP E+LAR+ A+ RR Sbjct: 60 LQVMQYIRAQHPALAVIILTARDSLEDRVKGLDLGADDYLVKPFDITELLARIRAVTRRN 119 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +++NN P + + + L RE +L+ L+ G +K+ + Sbjct: 120 ANQHTSELTNNIVWLNP----ATHEAKTLTQDNILLSNREFALLQTLLIRPGSIHSKSDL 175 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 IYG + E VE N VE I LRK KLG + + + R +G+ + N Sbjct: 176 EERIYG-WGEEVESNAVEFLIHCLRK----KLGTETIKNVRGVGWMVSKN 220 >gi|22536308|ref|NP_687159.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|77412156|ref|ZP_00788478.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|22533130|gb|AAM99031.1|AE014196_27 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|77161774|gb|EAO72763.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] Length = 223 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/210 (23%), Positives = 104/210 (49%), Gaps = 13/210 (6%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L ++GY + +G E N L+ EE + ++ I ++ + + EL A Sbjct: 21 LTQEGYQFITASNGQ--EALNCLDTEE-----VQLIITDIMMPMMDGYQLIQELRS---A 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128 VP+I ++ ++ F G DD + KP+ +E+ R+ A+ RR V+ ++ Sbjct: 71 AYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALLRRANIVAQHQLII 130 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + D + + P++E R+L +L++ + + ++ +I+G+ D ++E Sbjct: 131 GNTCLNEDELSLKYFEQEIIFPQKEFRVLFHLLSYPNRIFTRLELLDSIWGM-DTDLDER 189 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VV++ I+K+R+K+ + F +++ R +GY Sbjct: 190 VVDACINKIRRKVEHLPDF-KIETVRGVGY 218 >gi|325829921|ref|ZP_08163379.1| putative DNA-binding response regulator MtrA [Eggerthella sp. HGA1] gi|325488088|gb|EGC90525.1| putative DNA-binding response regulator MtrA [Eggerthella sp. HGA1] Length = 263 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 98/243 (40%), Gaps = 32/243 (13%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSL-EGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 V+I+D A + + +G + + F+ E L S D+ + L G GE Sbjct: 27 IVIIEDDADINEVVAVHLRRNGFACTQAFSGSEGRLLLSGSEPFDLVITDLMLPGMAGED 86 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 V+ R++RA +P+I +S + + G DD + KP E+LARV R Sbjct: 87 VV---RLVRARGDMPVIVMSARTTAADKVALLKLGADDYLTKPFDLDELLARVQVQLRHA 143 Query: 120 KVSNNRAETGPIRVFSDGRDPE----------------------VQGEVFPLPRRERRIL 157 V A P SD R PE V+ E L R E IL Sbjct: 144 DVRRASASGAP----SDERLPEPAAATAMRYKDWTLDVDARTLSVREEPVRLTRLEFNIL 199 Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217 E L+ K K ++F + + AVEE + H+S +R KLR +++ +G Sbjct: 200 EALVRRPRKVFTKRELFEIAWN-EESAVEEKAINVHVSNIRSKLRAAHSAGEIETVWGIG 258 Query: 218 YSI 220 + + Sbjct: 259 FKL 261 >gi|325831421|ref|ZP_08164675.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1] gi|325486675|gb|EGC89123.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1] Length = 232 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/145 (35%), Positives = 71/145 (48%), Gaps = 9/145 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R S VP+I ++ + F+ G DD V KP RE++ARV A RR +SN+ Sbjct: 68 RELRRTSSVPIIFLTAKDEEVDKVVGFELGADDYVVKPFKPRELVARVRARLRR-AISND 126 Query: 125 RA-ETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 A E GP I + + GE L +E IL LM ++G+ VA +F + Sbjct: 127 VAREDGPGMLECCGIALDESAYTATLHGEALSLTPKEFAILACLMRDQGRPVASRDLFES 186 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++G A N V HI LRKKL Sbjct: 187 VWGEIANAQSNNTVMVHIRHLRKKL 211 >gi|319793018|ref|YP_004154658.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315595481|gb|ADU36547.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 224 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/178 (30%), Positives = 91/178 (51%), Gaps = 20/178 (11%) Query: 54 IGKGEKVLELPRIIRAHSQVPL-IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 +G G+ + LP++ RA + P+ I ++ + + D+G DD + KP E+LAR+ Sbjct: 54 LGDGDGLSLLPQV-RALREPPIVIVLTARDQVTDRIRGLDAGADDYLIKPYDPAELLARL 112 Query: 113 AAIYRRLKVSNNRAETGPIRVFS----DGRDPEVQGEVFP--LPRRERRILEYLMANRGK 166 A+ RR A T P+ F D V+ + P L ++E +L +MA R + Sbjct: 113 RAVERR-----RSANTSPVLHFGTLEIDLAHDRVRKDGTPVVLTQKEWALLR-VMATRPE 166 Query: 167 RV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 R+ + + A+YG DEA + N +E IS+LR+ KLG + + R LGY + ++ Sbjct: 167 RIHTRENLADALYGFGDEA-DSNTLEVFISRLRR----KLGKSHIQTLRGLGYRLSFS 219 >gi|300693798|ref|YP_003749771.1| transcriptional regulator of hrp gene cluster, ompr family [Ralstonia solanacearum PSI07] gi|299075835|emb|CBJ35144.1| Transcriptional regulator of hrp gene cluster, OmpR family [Ralstonia solanacearum PSI07] Length = 246 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 5/115 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEV 146 F++GVDD++ E+ ARV + RR + A GP R+ R V Sbjct: 92 FEAGVDDLLTGHFTAEELRARVQRVLRRSEQPRQNASMHVVVGPYRLCRLTRTATVNEAP 151 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L RE L ++ G +++ QI SA++G D ++ E +E HI KLRKKL Sbjct: 152 IRLTAREFATAWLLFSSPGTFLSRQQIASAVWGA-DASIVERSIEQHIYKLRKKL 205 >gi|292670812|ref|ZP_06604238.1| two component response regulator [Selenomonas noxia ATCC 43541] gi|292647433|gb|EFF65405.1| two component response regulator [Selenomonas noxia ATCC 43541] Length = 225 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 3/133 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFP 148 D+G DD + KP E+LAR+ A+ RR ++ + E G ++ E G++ Sbjct: 91 LDAGADDYLVKPFEFSELLARLRALGRRTTQRIQHEVDEIGGFKLNRTANILEKNGKMIQ 150 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L RE ++ + L N G V + I I+GL + V N ++S++ LRKKL Sbjct: 151 LSPREFQLFDLLAQNIGIVVPRDIILDRIWGL-ESDVSSNNIDSYMKMLRKKLDAAGEGS 209 Query: 209 PVDSKRFLGYSID 221 + + R +GY ++ Sbjct: 210 VIKTIRGVGYKLE 222 >gi|229105162|ref|ZP_04235813.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-28] gi|228678343|gb|EEL32569.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-28] Length = 230 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 LE+ RIIR S VP++ +S + G DD + KP E+ ARV A+I R Sbjct: 62 LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASIRRST 121 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K S I++ DP E G L +E IL+ + N+ + K QI+ Sbjct: 122 KYSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++ + ++NV+ H+ +LR+K+ + Sbjct: 182 TLVWN-EEYYGDDNVINVHMRRLREKIES 209 >gi|255280853|ref|ZP_05345408.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM 14469] gi|255268790|gb|EET61995.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM 14469] Length = 224 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 6/163 (3%) Query: 62 ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 EL R++R QVP++ ++ + F++G DD V KP + +R+ A+ RR Sbjct: 62 ELCRLVRRLWGGQVPVLYLTVRGGTADIVGGFENGADDYVVKPFALEVLYSRILALLRRS 121 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +V G + + + + + E L E +IL LM N+GK V + Q+ ++ Sbjct: 122 SRVEEMHLSCGCLSLDRERQAVFCRQEEIRLSSLEYQILLLLMENKGKTVTRKQLLEQVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V +N + + +LR+KL N + R GY ++ Sbjct: 182 DSGGNFVNDNTLTVAMKRLREKLHNPSCLKTI---RSFGYRME 221 >gi|206969831|ref|ZP_03230785.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229072359|ref|ZP_04205563.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] gi|229082107|ref|ZP_04214584.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] gi|206735519|gb|EDZ52687.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228701203|gb|EEL53712.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] gi|228710784|gb|EEL62755.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] Length = 232 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172 KV+ N++ E G + + + R V GE L +E IL YL+A+ K+V + Sbjct: 124 LNQPKVAENKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 IF ++ D+ E N V HI LRKKL Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210 >gi|170729101|ref|YP_001763127.1| two component transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169814448|gb|ACA89032.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 225 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/231 (25%), Positives = 109/231 (47%), Gaps = 24/231 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D A + + F + G ++E + L +S + D+ ++ L G K+ Sbjct: 3 ILLVEDDATTIEYVVKGFTEQGHNIETASDGHQGLLLATSMKYDLILLDRMLPQLDGLKL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 L R SQ P++ +S + + +G DD + KP E+L R + +R Sbjct: 63 LAALRA--TGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGL 120 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L V N E +V DG + +Q + F ++L+YLM + + +++T Sbjct: 121 SQPAETGLTVGNLVMELLTRKVTLDGNELMLQPKEF-------QLLKYLMEHPNQVISRT 173 Query: 172 QIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 +F A++ FD NV++ HI+KLR+K +LGF + +++ R GY + Sbjct: 174 LLFEAVWDYHFDP--RTNVIDVHIAKLRRKF-EELGFGELIETVRGAGYRL 221 >gi|39934999|ref|NP_947275.1| two-component transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|192290532|ref|YP_001991137.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|39648850|emb|CAE27371.1| two-component transcriptional regulator, winged helix family [Rhodopseudomonas palustris CGA009] gi|192284281|gb|ACF00662.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] Length = 241 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 11/156 (7%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 ++ P++ +S + + +G DD + KP E+LARV + RR AE Sbjct: 86 NRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYAFAELLARVEVLSRR---HGGPAEETS 142 Query: 131 IRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 RV D GE L RE R+LEYLM + G+ V +T + ++ FD Sbjct: 143 YRVADLELDRLSHRVTRGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVWDYHFDP- 201 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ HIS+LR K+ + + R GY I Sbjct: 202 -QTNVIDVHISRLRSKIDKGFDHPLLHTIRGAGYMI 236 >gi|325263303|ref|ZP_08130038.1| DNA-binding response regulator RegX3 [Clostridium sp. D5] gi|324031696|gb|EGB92976.1| DNA-binding response regulator RegX3 [Clostridium sp. D5] Length = 243 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 13/147 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 E R IRA S VP++ ++ + + + GVDD + KP + ARV + R Sbjct: 81 FEFCREIRAGSDVPILMLTARDTELDEVKALELGVDDFMTKPFSVAVLKARVKRLVLRRN 140 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + R + RVF +GE L + E ++L + + NR + ++K QI Sbjct: 141 GGTVIQSNGIRVDVKECRVFR-------EGEEVVLSKVEYKLLLFFLENRNQVLSKEQIL 193 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 ++ V+EN V +I +LR K+ Sbjct: 194 ENVWDSAGRFVDENTVSVNIRRLRAKV 220 >gi|297154252|gb|ADI03964.1| two component system transcriptional regulator PhoP [Streptomyces bingchenggensis BCW-1] Length = 249 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 89/173 (51%), Gaps = 20/173 (11%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 E+ R +RA + P++ ++ + + +G DD V KP E+L R+ AI RR Sbjct: 71 EVTRSLRAVGVRTPVLFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAILRRTG 130 Query: 120 -----KVSNNRAETGPIRVFS---DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVA 169 ++ + AE +R D R EV G+ PL E ++L +LM N + ++ Sbjct: 131 HDVPYEMGEDEAEV--LRYADLELDERAHEVHRAGQYIPLSPTEFKLLAFLMENPNRVLS 188 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 K+QI ++G +D + + +VE+++ LR+K+ + DP + ++R +GY + Sbjct: 189 KSQILDRVWG-YDFSGDGRIVETYVRYLRRKIDH---LDPPLIHTQRGVGYCL 237 >gi|229838247|ref|ZP_04458406.1| DNA-binding response regulator in two-component regulatory system with KdpD [Yersinia pestis biovar Orientalis str. PEXU2] gi|229694613|gb|EEO84660.1| DNA-binding response regulator in two-component regulatory system with KdpD [Yersinia pestis biovar Orientalis str. PEXU2] Length = 209 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 18/158 (11%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S +P+I + + + + D+G DD ++KP E+LARV RR + + Sbjct: 51 LRQWSAIPIIVLFARNNEEDKVAALDAGADDYLSKPFGISELLARVRVALRR---HSGAS 107 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + P+ F+D R GE L E R+L L+AN GK + + Q+ + ++G Sbjct: 108 QESPLVNFADISVDLINRQVTRAGENLHLTPIEFRLLTALLANAGKVITQRQLLNQVWG- 166 Query: 181 FDEAVEENVVE-SHISKL-RKKLRNKLGFDPVDSKRFL 216 N VE SH ++ LR KL DP K L Sbjct: 167 ------PNYVEHSHYLRIYMGHLRQKLEADPTRPKHLL 198 >gi|228988485|ref|ZP_04148575.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771253|gb|EEM19729.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 223 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R + +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ G I++ R V G+ L RE + + ++N + + ++ Sbjct: 120 KKEVTVSHEVIGAGEIKICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 222 >gi|227891876|ref|ZP_04009681.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|301299823|ref|ZP_07206059.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|227866339|gb|EEJ73760.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|300852576|gb|EFK80224.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 229 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 8/168 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R SQ+P++ +S + G DD V KP + E++ARV ++ RR + Sbjct: 61 MEVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRAE 120 Query: 121 --VSNN---RAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V NN + E GP+ + D + + ++G+ L E IL L ++ + + +IF Sbjct: 121 HNVKNNEPDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHPNRVFSADEIF 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ + G + + +GY I+ Sbjct: 181 ERVWQQ-ESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227 >gi|217968993|ref|YP_002354227.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217506320|gb|ACK53331.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 225 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 9/141 (6%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R IR Q +P+I I+ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 61 ELVRRIRKRGQRMPVIVITARDALDDRIYGLDLGADDYLVKPFELAELSARMRAVQRRGG 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + R G + + DGR E+ G L RE +LE L+ G+ V + + G Sbjct: 121 GAGARLAFGALALDLDGRLAELDGAPMTLSGREWEVLEALVRADGRTVTRENLQGDGSG- 179 Query: 181 FDEAVEENVVESHISKLRKKL 201 N +E IS+LR ++ Sbjct: 180 -------NALEVCISRLRPRV 193 >gi|167622073|ref|YP_001672367.1| two component transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352095|gb|ABZ74708.1| two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 225 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 6/164 (3%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L+L +RA SQ P++ +S + + +G DD + KP E+L R + +R Sbjct: 60 LKLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRG 119 Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + GP+ + R + G+ L +E ++L+YLM + + +++T +F A+ Sbjct: 120 ESLPTITDLNVGPLTIELLTRKVTLDGQEILLQPKEFQLLKYLMEHVNQVISRTLLFEAV 179 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + FD NV++ HI+KLR+K + +++ R GY + Sbjct: 180 WDYHFDP--RTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221 >gi|165976486|ref|YP_001652079.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|307245974|ref|ZP_07528056.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307249167|ref|ZP_07531172.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250316|ref|ZP_07532266.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252700|ref|ZP_07534591.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307254952|ref|ZP_07536771.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257108|ref|ZP_07538881.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259390|ref|ZP_07541115.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261545|ref|ZP_07543213.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263734|ref|ZP_07545340.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165876587|gb|ABY69635.1| transcriptional regulatory protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|306852909|gb|EFM85132.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306854337|gb|EFM86535.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857643|gb|EFM89749.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859732|gb|EFM91754.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306862070|gb|EFM94045.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864379|gb|EFM96289.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866326|gb|EFM98189.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868668|gb|EFN00477.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870855|gb|EFN02593.1| Transcriptional regulatory protein qseB [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 238 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 27/229 (11%) Query: 3 VLIDDRALVKDGY----------IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52 +LI+D L+ DG + F D + E S E++ + + Sbjct: 21 LLIEDDKLIGDGLKLGLTKQNFVVDWFQDGKLGFEALFSTEYD-----------AVVLDL 69 Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 + K + + L + + +P++ ++ +L + F+SG DD + KP E++ R+ Sbjct: 70 TLPKMDGLAILKNWRKENLDIPVLILTARDTLDERILGFNSGADDYLCKPFALMEVVVRL 129 Query: 113 AA-IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A I RR K S+ G + + S + + L +E ++L +N+ + + ++ Sbjct: 130 QALIRRRYKQSSTEITLGDLTIDSSTHKVTLADKEINLTSKEFQLLLLFASNKDRVLTRS 189 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I +Y +D V N +E +I LRK KLG + + + +GY I Sbjct: 190 AIEEKLYS-WDNDVSSNAMEVYIHNLRK----KLGKEWIKTVHGIGYKI 233 >gi|159035749|ref|YP_001535002.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157914584|gb|ABV96011.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 224 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 20/184 (10%) Query: 23 GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDY 81 G +L+G L +S + DV ++ L G VL L IRA S VP++ + Sbjct: 29 GTALDGLREL-------ASRQSDVVILDLHLPDLDGATVLSL---IRADSAVPVVVATAC 78 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDG 137 + + +G DD V KP ++ AR+AA+ RR +A T G + + ++ Sbjct: 79 DTESEIIRLLRAGADDYVVKPYSVEQLEARIAAVLRR---GAGQAATVLTIGGLHLDAEA 135 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 R + G L R E +L YL GK V + Q+ ++ E V+ H++ L Sbjct: 136 RIASLDGVRLQLSRLEFDLLTYLAQRAGKVVTRRQLLDHVW--RSEGRSLETVDVHVTWL 193 Query: 198 RKKL 201 R+KL Sbjct: 194 RRKL 197 >gi|94499218|ref|ZP_01305756.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Oceanobacter sp. RED65] gi|94428850|gb|EAT13822.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Oceanobacter sp. RED65] Length = 243 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 18/176 (10%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE L + R++R + P++ ++ + + G DD + KP+ R +LAR+ Sbjct: 59 LMLPGEDGLSVCRLVRPSYKGPILMLTARDDDLDQVLGLEMGADDYLTKPVRPRVLLARI 118 Query: 113 AAIYRRLK-------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159 A+ RRLK S R + V + R+ + + L E +L Sbjct: 119 RALLRRLKDNPSVAGQNVDGEESQTRVTFANLVVDNSMREAWLNDDPIELTSAEFDLLWL 178 Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 L +N G+ +++ +IF+A+ G+ + ++ ++ +S++R K+G DPV+ KR Sbjct: 179 LSSNAGRVLSREEIFTALRGIEYDG-QDRSIDVRVSRIRP----KIGDDPVNPKRI 229 >gi|194467421|ref|ZP_03073408.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|194454457|gb|EDX43354.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] Length = 235 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 9/151 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ + +RA +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 62 LEVAKRVRAKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQA 121 Query: 119 -LKV-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 LK +N + G + + + +GE L RE +L YL + G+ + + Sbjct: 122 TLKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ + +LR+K+ + Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIED 211 >gi|89889297|ref|ZP_01200808.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7] gi|89517570|gb|EAS20226.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7] Length = 238 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 77/154 (50%), Gaps = 9/154 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R P+I ++ + + G DD + KP RE+ AR A+ RR Sbjct: 67 VEVCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSD 126 Query: 121 VSN---NRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 +N N ++T G ++V + R ++G+ L +E +L L G+ ++++ Sbjct: 127 AANQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSE 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 + I+G ++ + E+ V SHI++LR K+ +G Sbjct: 187 LLDVIWG-YNFSGYEHTVNSHINRLRAKIEPDMG 219 >gi|296534444|ref|ZP_06896881.1| transcriptional activator protein CzcR [Roseomonas cervicalis ATCC 49957] gi|296265229|gb|EFH11417.1| transcriptional activator protein CzcR [Roseomonas cervicalis ATCC 49957] Length = 258 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 2/131 (1%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGP 130 ++P++ I++ S++ + G DDV+ +P+ ++AR+ AI RR L ++++ G Sbjct: 72 RMPVVIITNPISVEDEQTALNIGADDVLLRPVRAPVLIARMQAILRRGLGHTSSQLTCGN 131 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + R V G + RE +LE LM RG + K Q S YG+ D ++ ++ Sbjct: 132 VVLDQARRTVSVDGRHVRITCREFDVLEMLMLRRGVLLTKEQFMSRAYGVED-GPDQRIL 190 Query: 191 ESHISKLRKKL 201 + + KLR+KL Sbjct: 191 DVFVCKLRRKL 201 >gi|284052014|ref|ZP_06382224.1| two component transcriptional regulator [Arthrospira platensis str. Paraca] gi|291569758|dbj|BAI92030.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 243 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR+ Sbjct: 71 LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDKNGASG 130 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ + IR+ ++ R E L E +LE L++ G+ ++++I ++G Sbjct: 131 IPSSGVIQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 190 Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203 E V+ VV+ HIS+LR KL + Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215 >gi|256017749|ref|ZP_05431614.1| DNA-binding transcriptional regulator BaeR [Shigella sp. D9] gi|332278767|ref|ZP_08391180.1| DNA-binding response regulator in two-component system response regulatory system with BaeS [Shigella sp. D9] gi|332101119|gb|EGJ04465.1| DNA-binding response regulator in two-component system response regulatory system with BaeS [Shigella sp. D9] Length = 240 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 8/156 (5%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGIDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKR 167 I RR K + AE+ P+ + +GR +G++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQQQDAES-PL-IIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKV 179 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ + + +Y + V + ++SHI LR+KL + Sbjct: 180 FSREHLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|284033660|ref|YP_003383591.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283812953|gb|ADB34792.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 228 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 14/186 (7%) Query: 29 FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIG 77 +L + SSA E +S + G + VL EL R++R SQVP+I Sbjct: 18 LRALTERGYATSSAGEGLSGLSELTHGSPDLVLLDLGLPDIEGGELLRMLRVVSQVPVIV 77 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGPIRVFS 135 ++ Q +D D G DD + KP ++ AR+ A+ RR V + G + + Sbjct: 78 VTARDDEQQMVDMLDGGADDYLVKPFGPGQLDARIRAVLRRSGVDHRPGVLTVGALMIDP 137 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 R + G+ L RE +L YL G+ V + Q+ ++ L E+ V+ H+S Sbjct: 138 AARSARLDGDELELAPREFELLRYLAERAGEVVTRRQLLVEVWQLAYGGAEKT-VDVHLS 196 Query: 196 KLRKKL 201 LR+KL Sbjct: 197 WLRRKL 202 >gi|222081273|ref|YP_002540636.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221725952|gb|ACM29041.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 241 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 105/232 (45%), Gaps = 24/232 (10%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLE-GFNSLEFEEWLQSSAREDVSAIEA-FLIGKGEKV 60 +++DD ++ F D+G ++ N LE LQ +E+ AI +++ G+ Sbjct: 12 LVVDDDPRIRQMLTRYFEDEGYAVSTASNGLEMRACLQ---QENFDAILLDWVLPGGKDG 68 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+L R IRA S VP+I ++ + + + G DD + KP H RE+ AR+ +I RR + Sbjct: 69 LDLAREIRAQSDVPIIMLTGRDDVVDRIVGIEVGADDYIAKPFHLREVHARLKSILRRRQ 128 Query: 121 VSNNRAETGPIRV-------FSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + P V G+ +G L E IL + G+ +++ Sbjct: 129 PAIRSPDKNPDDVIRFEGWQLDTGKRQLLAAEGHEIELTTGEFDILVVFARHAGRVLSRE 188 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 + G EA + +++ I++LRKK+ DP + S R +GY Sbjct: 189 LLMDLTRGRNLEAFDRT-IDAQIARLRKKIET----DPARPQLIKSIRGVGY 235 >gi|187925269|ref|YP_001896911.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|187716463|gb|ACD17687.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 260 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 17/169 (10%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA +S +P++ ++ S+ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLRRLRARNSTLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 118 Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A GP V GR V +V L RE +LE L+ G+ V+K Q Sbjct: 119 -----GAGGGPTVVRHGSLSFDQVGRIAYVNEQVIDLSARELGLLEVLLQRIGRLVSKEQ 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + E V N +E ++ +LRKK+ G + + R LGY ++ Sbjct: 174 LVDHLCE-WGEEVSNNAIEVYVHRLRKKIEPS-GVRII-TVRGLGYCLE 219 >gi|170685581|ref|ZP_02876804.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170670045|gb|EDT20785.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 232 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172 KV+ N++ + G + + + R V GE L +E IL YL+A+ K+V + Sbjct: 124 LNQPKVAENKSVLQVGGVTIDPERRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 IF ++ D+ E N V HI LRKKL Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210 >gi|167760992|ref|ZP_02433119.1| hypothetical protein CLOSCI_03390 [Clostridium scindens ATCC 35704] gi|167661371|gb|EDS05501.1| hypothetical protein CLOSCI_03390 [Clostridium scindens ATCC 35704] Length = 235 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 12/153 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR +P++ ++ L F +G DD ++KP E++ARV A R+ + Sbjct: 64 EICKEIRDKLDIPILMVTARTESVDKLRGFGAGADDYISKPFDPAELVARVNANLRQYER 123 Query: 122 SN----NRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 S ++E P +R+ ++G + P RE +L++L N +K Sbjct: 124 SRFGAAKKSEKNPDEIVIGDLRILTEGWKVYKGEKEIRFPNREFELLQFLAMNPNIVFSK 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 Q+F I+G +D + V HI+++R+K+ + Sbjct: 184 EQLFEKIWG-YDYVGDSATVMVHINRIREKIED 215 >gi|167748073|ref|ZP_02420200.1| hypothetical protein ANACAC_02817 [Anaerostipes caccae DSM 14662] gi|167652065|gb|EDR96194.1| hypothetical protein ANACAC_02817 [Anaerostipes caccae DSM 14662] Length = 223 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 84/159 (52%), Gaps = 5/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 + R +R S VP+I ++ S L + G DD ++KP + + ++AR++++ +R K V Sbjct: 65 ICRAVREKSDVPIIVVTSRDSEMDELMSMNLGADDFISKPYNTQILVARISSLLKRTKHV 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + + G E L + E +IL L+ ++ + V++ + ++ Sbjct: 125 KEDWQMTHKGLLINLSNSTACHGEEQIELSKNEVKILSVLVKHKEEIVSRDNLMEELWQ- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 +E V++N + +I++LRKKL + +G D + +KR GY Sbjct: 184 SNEFVDDNTLTVNINRLRKKL-DSIGLADYIVTKRGQGY 221 >gi|218906075|ref|YP_002453909.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218537222|gb|ACK89620.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 232 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172 KV+ N++ + G + + + R V GE L +E IL YL+A+ K+V + Sbjct: 124 LNQPKVAENKSALQVGGVTIDPERRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 IF ++ D+ E N V HI LRKKL Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210 >gi|163801134|ref|ZP_02195034.1| DNA-binding response regulator [Vibrio sp. AND4] gi|159175483|gb|EDP60280.1| DNA-binding response regulator [Vibrio sp. AND4] Length = 219 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 30/221 (13%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L +G++ DG+ + EEW +A ++ G L+ ++R Sbjct: 19 TLENNGWVPELSQDGI--DALYRATSEEW------------DAIVLDLGLPKLDGLTVLR 64 Query: 69 A----HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 + P++ +S +L ++ ++G DD + KP E+ AR+ A RR S N Sbjct: 65 GIRDENINTPVVILSARDTLSQRVEGLNAGADDYLTKPFEMVELTARLRAQLRR--ASGN 122 Query: 125 RAETGPIRVFS-DGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 + I S D R +V QG+ L E +++ Y + N K +++T++ +Y Sbjct: 123 PSPVMQIGDLSLDTRSSKVLWQGQAVSLTALEYKVVAYFVHNPEKVISRTELVEHVYKQD 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + N +E I ++RKK+ K+ + + R LGY ++ Sbjct: 183 FDR--DSNTIEVFIGRIRKKIAPKI----IKTVRGLGYQLN 217 >gi|158452067|gb|ABW39375.1| PhoP [Bacillus subtilis] Length = 239 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 15/141 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-----------GPIRVFSDGRDPEV 142 G DD + KP RE+ ARV AI RR +++ +E G +++ D + Sbjct: 95 GADDYMTKPFSPREVNARVKAILRRSEMAAPSSEMKNDEMEGQIVIGDLKILPDHYEAYF 154 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + L +E +L YL ++G+ + + + SA++ +D A + +V+ HIS LR K+ Sbjct: 155 KESQLELTPKEFELLLYLGRHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIE 213 Query: 203 NKLGFDPVDSK--RFLGYSID 221 N P+ K R LGY ++ Sbjct: 214 NNTK-KPIYIKTIRGLGYKLE 233 >gi|118477956|ref|YP_895107.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118417181|gb|ABK85600.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 248 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 22/242 (9%) Query: 1 MFVLIDDRALVKDGYIALFGDD-------GVSL--EGFN---SLEFEEWLQSSAREDVSA 48 M ++ +R + + I + DD V L EG+N + + ++ LQ + +V Sbjct: 7 MLMICKERNYIMNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDDALQMISTYEVDL 66 Query: 49 IEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108 + ++ LE+ + +R ++ VP++ +S + +G DD + KP + E+ Sbjct: 67 MILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLEL 126 Query: 109 LARVAAIYRRLKVSNN---RAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYL 160 +ARV A+ RR N + E G IR+ S +V GE L E IL L Sbjct: 127 VARVKALLRRSSFQNASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLL 186 Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 +N G+ + +IF ++ D V HIS LR KL + G + + +GY Sbjct: 187 ASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYK 245 Query: 220 ID 221 I+ Sbjct: 246 IE 247 >gi|186473343|ref|YP_001860685.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184195675|gb|ACC73639.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 226 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 7/141 (4%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 ++VP++ +S + + +G DD V KP E++AR+ A+ RR + +N Sbjct: 72 NKVPVLILSALDEVDERIRGLKAGGDDYVVKPFSFGEVVARLEALARRSQDNNFETTLKV 131 Query: 131 IRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEE 187 + D R G+ L RE ++LEYLM + + V +T + I+ FD + Sbjct: 132 ADLCIDLLSRKVMRAGKAIVLKPREFKLLEYLMRHAEQVVTRTMLLENIWEYNFDP--QT 189 Query: 188 NVVESHISKLRKKLRNKLGFD 208 NV++ H+SKLR+K+ +GF+ Sbjct: 190 NVIDVHVSKLRQKI--DIGFE 208 >gi|320528752|ref|ZP_08029904.1| response regulator receiver domain protein [Solobacterium moorei F0204] gi|320130962|gb|EFW23540.1| response regulator receiver domain protein [Solobacterium moorei F0204] Length = 221 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 3/158 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 + R IR S VP+I ++ + + G DD + KP + ++A +A + +R K + Sbjct: 63 ICREIRKQSSVPIIILTSRSGEMDEIMGLEIGADDFIAKPFNPGVLIAHIAVVLKRSKGM 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + T + GE L R ER+IL LM N K V++ ++ ++ Sbjct: 123 TEDDLITCRGLKLDIAKSFVSYGERSVELTRNERQILMLLMRNSEKIVSREKLMDTLWQ- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE V +N + +I++LRKKL + V +KR +GY Sbjct: 182 SDEFVSDNTLTMNINRLRKKLDEIGAKEFVQTKRGMGY 219 >gi|306832962|ref|ZP_07466094.1| response regulator [Streptococcus bovis ATCC 700338] gi|304424861|gb|EFM27995.1| response regulator [Streptococcus bovis ATCC 700338] Length = 232 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 7/141 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NR 125 IR S +P++ ++ + G DD + KP +E++ARV ++ RR N Sbjct: 69 IRETSNIPVLMLTAKSGEDDKVFGLRLGADDYLTKPFSIKELMARVNSLIRRYTTLNPTF 128 Query: 126 AETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 AE I ++ R V L +E +L +L +N+G+ K QI++ ++ Sbjct: 129 AEEDCITLKGMKIDKVNRTVLVNNISVELTSKEFDLLTFLASNKGRIFTKKQIYTQVWK- 187 Query: 181 FDEAVEENVVESHISKLRKKL 201 D A ++N + S ISKLRKK+ Sbjct: 188 DDYAFDDNNIMSFISKLRKKI 208 >gi|303235216|ref|ZP_07321835.1| response regulator receiver domain protein [Finegoldia magna BVS033A4] gi|302493703|gb|EFL53490.1| response regulator receiver domain protein [Finegoldia magna BVS033A4] Length = 218 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/161 (22%), Positives = 78/161 (48%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + IR S +P I ++ + + ++ F S D + KP + R+ ++ ++ Sbjct: 60 LDVLKKIRETSDIPAIMLTAFSDEEYKINAFTSLADGYIEKPFSLPVLKVRIESLIKKHY 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N V ++ G+ + +E IL+Y++ N G+ + + QI +++ Sbjct: 120 GNNETFNYKNTEVNFASYTAKLNGKKVDVNAKELEILKYMIENEGQALTRMQIIDSVWKE 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 180 TDEIPFDRVIDVYIKELRKKLE----LDCIVTIRNVGYKLE 216 >gi|295697225|ref|YP_003590463.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295412827|gb|ADG07319.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 231 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 3/130 (2%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPI 131 P++ ++ SL L FD G DD + KP E++AR+ A+ +R + R G Sbjct: 75 PVLFLTARDSLADKLTGFDRGGDDYLVKPFAFAELVARIRALLKRANRPLQPERLTVGEW 134 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + G+ L +E ++LE LM ++K QI ++G +AV NVVE Sbjct: 135 ELDPKTHTFSIAGQEVELTSKEFQLLELLMQYPRYTLSKIQILEQVWGFAPDAV-TNVVE 193 Query: 192 SHISKLRKKL 201 I +LR+K+ Sbjct: 194 VTIGRLRQKI 203 >gi|226954429|ref|ZP_03824893.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|294651444|ref|ZP_06728758.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] gi|226834778|gb|EEH67161.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|292822690|gb|EFF81579.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] Length = 230 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 3/142 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +R S +P+I ++ + + G DD + KP +E++ARV A+ RRL+ Sbjct: 64 LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLRRLE 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 124 RKAEPEQNDLFRIDKAQQRIWYQQKALTLTPTEFRLLELFLEHLGQVYSRAQLLDHINPD 183 Query: 180 LFDEAVEENVVESHISKLRKKL 201 FD V + V++SHI LR+K+ Sbjct: 184 SFD--VADRVIDSHIKNLRRKI 203 >gi|145297137|ref|YP_001139978.1| two-component system potassium response regulator KdpE [Aeromonas salmonicida subsp. salmonicida A449] gi|142849909|gb|ABO88230.1| two-component system potassium response regulator KdpE [Aeromonas salmonicida subsp. salmonicida A449] Length = 227 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 8/151 (5%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G ++L+ IR H Q P++ +S S Q + D+ +D ++KP E++AR+ Sbjct: 58 GDGIQILQ---AIREHHQNPVLVLSARDSEQEKVRLLDASANDYMSKPFGIGEMMARIRV 114 Query: 115 IYR-RLKVSNNRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + R R VS+ P + + + + E PL R+E +L+ L+ + GK V + Sbjct: 115 LLRQRAGVSSGERRHFPQCGLTLDASSHKVSLHDEEIPLSRKEFALLQALVCHPGKLVMQ 174 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 TQ+ + I+G + + + + I+ LRKKL Sbjct: 175 TQLLNDIWGPSHKE-DTHYLRIVIASLRKKL 204 >gi|113868407|ref|YP_726896.1| response regulator [Ralstonia eutropha H16] gi|113527183|emb|CAJ93528.1| response regulator, phosphate regulon transcriptional regulator PhoB, OmpR-family [Ralstonia eutropha H16] Length = 235 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 17/160 (10%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122 Q+P+I ++ Q + ++G DD V KP +E+LAR+ A+ RR + ++ Sbjct: 76 QIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRRRAPQLTDDVVAIN 135 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--L 180 R + RV ++ E+ P E R+L +LM + + +++Q+ ++G + Sbjct: 136 GLRLDPATHRVTGQDDSGAIKLELGPT---EFRLLHFLMTHPERVHSRSQLLDQVWGDHV 192 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F VEE V+ HI +LR L + +++ R GY + Sbjct: 193 F---VEERTVDVHIKRLRAALTPGGYSNMIETVRGSGYRL 229 >gi|89096800|ref|ZP_01169692.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89088815|gb|EAR67924.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 236 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 11/170 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R ++P+I ++ S + + G DD V KP +RE++ARV A RR + Sbjct: 62 MEVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRHQ 121 Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N G + + D +GE L RE +L YL + G+ + + Sbjct: 122 QIAAKAGEEEETNEIAIGSLVIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 182 HLLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYL 230 >gi|134291089|ref|YP_001114858.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134278|gb|ABO58603.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 226 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/143 (30%), Positives = 74/143 (51%), Gaps = 7/143 (4%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRA 126 A S+VP++ +S + + +G DD V KP E++AR+ A+ RR + + + Sbjct: 70 AGSKVPVLILSALDEVDERIRGLKAGGDDYVVKPFSFGEVVARLEALARRSQDNGFDTAL 129 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 + + + R G+ L RE ++LEYLM + + V +T + I+ FD Sbjct: 130 KLADLSIDLLSRKVTRAGKPIVLKPREFKLLEYLMRHAEQVVTRTMLLENIWEYHFDP-- 187 Query: 186 EENVVESHISKLRKKLRNKLGFD 208 + NV++ H+SKLR+K+ GFD Sbjct: 188 QTNVIDVHVSKLRQKIDT--GFD 208 >gi|125974602|ref|YP_001038512.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256004035|ref|ZP_05429020.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281419128|ref|ZP_06250145.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125714827|gb|ABN53319.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255991958|gb|EEU02055.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407277|gb|EFB37538.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316941721|gb|ADU75755.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 233 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/159 (22%), Positives = 75/159 (47%), Gaps = 1/159 (0%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R I+ S +P++ ++ ++ L G D+ + KP +LARVA + +R + Sbjct: 62 QICREIKQKSAIPVLVLTSRDQMKDELHALKLGADEYLTKPCRKERLLARVANVLKRYEG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N E + + + LP+ + ++LE + V K + AI+G Sbjct: 122 RANLLEGADFLLDRQTYTLYIHNQSVVLPKNQGKLLEVFLMRGDDIVTKDDLCLAIWG-T 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++EN ++ ++++L+K + + + S R +GY + Sbjct: 181 TEFIDENALQVNLTRLKKTMTSLKMRQKIVSVRGVGYKL 219 >gi|289671038|ref|ZP_06492113.1| two-component system response regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 264 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 31/195 (15%) Query: 51 AFLIGKGEKVL------------ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98 A L G+G +++ E+ R IR S VP+I ++ + D+G +D Sbjct: 74 ALLAGQGAELVVLDIGLPDRDGHEVLREIRQWSSVPVIMLTVRAGETEKVAALDAGANDY 133 Query: 99 VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLP 150 V KP +E++AR+ ++ R+ + E+ VF DG R+ + GE PL Sbjct: 134 VTKPFGVQELMARIRSLLRQAGAGSTVEES----VFDDGRLHIHLGLREVTLNGEAVPLS 189 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG---- 206 R+E +L L+ + G+ V + Q+ ++G E + + + + KLR+KL++ Sbjct: 190 RKEYALLALLLKHAGRVVTQPQLLREVWGPTHED-DTHYLRILVGKLRQKLQDAAAAPHY 248 Query: 207 --FDPVDSKRFLGYS 219 +P RF+G + Sbjct: 249 IVTEPGVGLRFIGVT 263 >gi|229527792|ref|ZP_04417183.1| transcriptional regulator [Vibrio cholerae 12129(1)] gi|229334154|gb|EEN99639.1| transcriptional regulator [Vibrio cholerae 12129(1)] Length = 224 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 18/170 (10%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L L + IRA +QV ++ +S ++ + +G DD + KP H E+LAR+ A+ RR Sbjct: 60 LTLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRN 119 Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 L+ ++ +RV+ + E L +E ILE + G ++ Sbjct: 120 IQTHTSNKLRFADLELCLSTMRVYRAEQPIE-------LTAKEISILELFLRKPGHIFSR 172 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +I + ++G+ + + NVV+ ++ +LRKK+ + +KR +GY + Sbjct: 173 ERILANVWGIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221 >gi|254520662|ref|ZP_05132718.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] gi|226914411|gb|EEH99612.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] Length = 222 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 84/160 (52%), Gaps = 10/160 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125 IR+ S+VP+I I+ + L G DD + KP + + +LAR+ A+ +R +++ Sbjct: 67 IRSFSKVPIIFITSRNTNIDELMAITLGGDDYITKPYNTQILLARINALIKRAYPNDSNL 126 Query: 126 --AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY--GLF 181 E +++ E +G L + E +IL YL+ N+ K V++ +I ++ +F Sbjct: 127 DIIEYNGLKLNILSSTIEYKGNSKELTKNEMKILYYLLINKEKIVSRVEIMEYLWDSSMF 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 V +N + +I+++R K+ ++G D + +KR GY I Sbjct: 187 ---VNDNTLTVNITRIRNKIE-EIGLKDFIKTKRGQGYII 222 >gi|254304225|ref|ZP_04971583.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324417|gb|EDK89667.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 224 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 81/160 (50%), Gaps = 5/160 (3%) Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +RA+ ++ ++ ++ + + D G DD + KP RE++AR+ A+ RR K Sbjct: 61 EVVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRR-K 119 Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N N + + V + G+ L +E +LEYL+ N+G+ +++ +I ++ Sbjct: 120 YGNISNELQIDDLIVDISKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E E N+++ I +RKK+ + +KR LGY Sbjct: 180 DYAYEG-ESNIIDVLIKNIRKKIDIGDSKPIIHTKRGLGY 218 >gi|111025331|ref|YP_707751.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110824310|gb|ABG99593.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 230 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 6/203 (2%) Query: 23 GVSLEGF---NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGI 78 G+ LEGF + E+ L + + I ++ G E+ R +RA P++ + Sbjct: 19 GLELEGFVVVTAATGEDGLWRATEDTFDVIVLDIMLPGMNGYEIVRALRAKQIWTPILML 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR 138 + D FD G DD + KP ++AR+ A+ RR + T R Sbjct: 79 TAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRRGAPARPVLLTAGDLSLDPAR 138 Query: 139 DPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 ++G E L RE +LE+L+ + + K I ++ + +EN+VE +I L Sbjct: 139 RRVMRGNEELALTPREFGVLEFLLRHPDTALTKGVILRNVWDAHYDG-DENIVEVYIGYL 197 Query: 198 RKKLRNKLGFDPVDSKRFLGYSI 220 R+K+ G +D+ R +GY + Sbjct: 198 RRKIDAPFGAHTIDTVRGVGYRL 220 >gi|56540577|gb|AAV92742.1| PmrA [Escherichia coli] Length = 222 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 11/205 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G + E QS S + L E L Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAE--QSLEAGHYSLVVLDLGLPDEDGL 60 Query: 62 E-LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L RI + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 61 HFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR-- 118 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 NN+ E+ G + + R + GE L +E +L LM G V + +++ Sbjct: 119 -HNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYND 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 IY +D N +E HI LR K+ Sbjct: 178 IYN-WDNEPSTNTLEVHIHNLRDKV 201 >gi|49474784|ref|YP_032826.1| two-component response regulator [Bartonella quintana str. Toulouse] gi|49240288|emb|CAF26763.1| Two-component response regulator [Bartonella quintana str. Toulouse] Length = 227 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 3/130 (2%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133 P+I I++Y + T+ + G +D V KP +LAR+ A R+ + + + + Sbjct: 78 PIIMITNYDTDCDTILDLEEGANDYVTKPFRFAVLLARIRAQLRQYEQNEDAVFCIGPYI 137 Query: 134 FSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 F G+ + Q L +E IL+YL N K V + + I+G ++E + + +E Sbjct: 138 FKPGQKLLIDQQDNKIRLTEKEAAILKYLSCNNDKIVNRETLLEQIWG-YNENIVTHTLE 196 Query: 192 SHISKLRKKL 201 +HI +LR+K+ Sbjct: 197 THIYRLRQKI 206 >gi|15612851|ref|NP_241154.1| two-component response regulator [Bacillus halodurans C-125] gi|10172901|dbj|BAB04007.1| two-component response regulator [Bacillus halodurans C-125] Length = 225 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 78/159 (49%), Gaps = 1/159 (0%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +++ P++ ++ LQ L G DD + KP + +LAR+ + RR K Sbjct: 62 DICKTLKSKGIGPILILTSRDKLQDELHGLHLGADDYLIKPCNRDRLLARIQNLLRRFKG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + + E L E ++L L+ N+ V+K+ + ++G Sbjct: 122 QPDLIDGGKFSLDPNTFTLYKGSESLRLSENEGKLLLALVENKPGIVSKSTLSERLWG-T 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 DE ++EN ++ ++++LRK LR D +++ R GY + Sbjct: 181 DEYIDENALQVNLTRLRKTLRPLNLEDEIETIRGQGYRL 219 >gi|148244000|ref|YP_001220238.1| two component transcriptional regulator [Acidiphilium cryptum JF-5] gi|146400563|gb|ABQ29096.1| two component transcriptional regulator, winged helix family [Acidiphilium cryptum JF-5] Length = 231 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 6/156 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VS 122 +R S VP+I +S + FD+G +D V KP E+LAR+ +R + V Sbjct: 75 LREFSDVPVIVLSARDQEAQKIAAFDAGANDYVEKPFGLGELLARIRNAFRLIATGQGVP 134 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 E +R+ R + G + E RIL L +RGK V I A +G Sbjct: 135 TEAIEIDGLRIDEAARSVSLDGAEIHFTKTEFRILAALARHRGKLVTHDDILQAGWGDLQ 194 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E + V +I +R+KL K + + +K LGY Sbjct: 195 E-YDRAYVRIYIRSIRQKL-GKFADNHLKTKSGLGY 228 >gi|119715849|ref|YP_922814.1| response regulator receiver [Nocardioides sp. JS614] gi|119536510|gb|ABL81127.1| response regulator receiver [Nocardioides sp. JS614] Length = 225 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 2/154 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 +A VP++ ++ D D G DD + KP ++AR+ A+ RR Sbjct: 68 KAGVWVPILMLTAKDGEYDEADALDLGADDYLTKPFSFVVLVARLRALVRRGAPKRPSVL 127 Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 T G + + R G L RE +L +LM + G+ ++KT I +++ L + + Sbjct: 128 TVGDLTLDPATRMVGRGGTEIALTPREFALLHFLMRHPGEVLSKTAIVQSVWDLNYDG-D 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ENVVE ++ LR+K+ G + + R GY + Sbjct: 187 ENVVEVYVGYLRRKIDQPFGTTTIQTMRGAGYRL 220 >gi|332307159|ref|YP_004435010.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174488|gb|AEE23742.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 231 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 19/194 (9%) Query: 22 DGVSLEGFNSLEFEEWLQSSA-----REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLI 76 D +SLEGF + + ++ A D ++ L GK L + + +R S VP+I Sbjct: 22 DFLSLEGFLTHVVHDGDEAEAAIKQVNPDCVILDLMLPGKDG--LSICKDVRKFSHVPII 79 Query: 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP------ 130 ++ L G DD V KP RE++ARV A+ RR + +T P Sbjct: 80 MLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQALLRRAALGAPAEKTAPNILTFK 139 Query: 131 -IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA--VEE 187 IR+ ++ + + G + L E R+L+ L+ G ++ + Y ++A V Sbjct: 140 HIRIDTERFECTINGSIIELTPVEFRLLKTLLGKPGTVFSREILMQRCY---EDARIVSN 196 Query: 188 NVVESHISKLRKKL 201 ++SH+ LR K+ Sbjct: 197 RTIDSHMKNLRNKI 210 >gi|311070584|ref|YP_003975507.1| YycF protein [Bacillus atrophaeus 1942] gi|310871101|gb|ADP34576.1| YycF [Bacillus atrophaeus 1942] Length = 236 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 80/169 (47%), Gaps = 10/169 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 +E+ R +R +P+I ++ S + + G DD V KP RE+LARV A RR Sbjct: 63 VEVCREVRKKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQL 122 Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + S+N G + +F D + E L RE +L YL + G+ + + Sbjct: 123 TTAPAEEESSSNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREH 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ N + + ++R +GY + Sbjct: 183 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230 >gi|312198357|ref|YP_004018418.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229693|gb|ADP82548.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 235 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 13/148 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R++R + VP++ + T + +SG DD + KP + + ARVAA+ RR + + Sbjct: 65 RMLRGVTDVPVVVATARDDDATIVRLLNSGADDYLVKPFTPQHLNARVAAVLRRARPGQH 124 Query: 125 RAETG------PIRVFSDG-----RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + G P+RV R + G L RRE +L YL A G V + ++ Sbjct: 125 AGDLGEAAVSPPLRVGELAVDIPRRAATLAGARLDLTRREFDLLAYLAARPGLVVGRGEL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 +A++ + ++ H+S LR+KL Sbjct: 185 LTAVW--HQAYGGDQTIDVHLSWLRRKL 210 >gi|255526947|ref|ZP_05393841.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296185076|ref|ZP_06853486.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509347|gb|EET85693.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049910|gb|EFG89334.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 228 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 8/168 (4%) Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E EL + I A+ ++P+I ++ + + + G DD + KP H +E+L RV R Sbjct: 59 ESGFELCKFINANYKIPIIMLTARNDITDKVLGLELGADDYITKPFHIKEVLVRVKIALR 118 Query: 118 RLKVSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R+ N I++ + R G+ L +E +L + + N+ + + Sbjct: 119 RVDKYRNLDNYNDFINLNDSIKIKLENRMVIKDGKEIKLKPKEYDLLVFFIKNKNRVFTR 178 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +I ++G+ D E V+ H+ +LR KL G +++ +GY Sbjct: 179 EEILDKVWGI-DYCGEIRTVDIHVRRLRAKLNLDSGQSFIETVFGVGY 225 >gi|237718181|ref|ZP_04548662.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|260174609|ref|ZP_05761021.1| two-component system response regulator [Bacteroides sp. D2] gi|293371072|ref|ZP_06617612.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|315922873|ref|ZP_07919113.1| two-component system response regulator [Bacteroides sp. D2] gi|229452602|gb|EEO58393.1| two-component system response regulator [Bacteroides sp. 2_2_4] gi|292633841|gb|EFF52390.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC 3f] gi|313696748|gb|EFS33583.1| two-component system response regulator [Bacteroides sp. D2] Length = 224 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 85/166 (51%), Gaps = 8/166 (4%) Query: 61 LELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 LEL R+ R Q+P+I ++ + + + D+G DD + KP +E+ AR+ A+ RR Sbjct: 61 LELCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRR 120 Query: 119 LK-VSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K V +N + + + R + +G++ L +E R+LEY M ++G +++ + Sbjct: 121 NKEVPSNLLTCDNLVLDCNTRKAK-RGDIDIDLTVKEYRLLEYFMTHQGVALSRITLLKD 179 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ FD N+V+ +++ LR K+ + + LGY ++ Sbjct: 180 VWDKNFD--TNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIMN 223 >gi|229099550|ref|ZP_04230478.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|229118615|ref|ZP_04247967.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228664807|gb|EEL20297.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228683846|gb|EEL37796.1| DNA-binding response regulator [Bacillus cereus Rock3-29] Length = 220 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 5/145 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R IR P+I ++D S + + +G DD + KP E++ARV AI RR Sbjct: 57 EICRQIRLVKTTPIIIVTDNISSKDCIAGLQAGADDYIRKPFVKEELVARVQAILRRSDY 116 Query: 121 VSNNRAETGPIR-VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + N + +F D V+ GE L +RE +L +L+ N+ +++ + + + Sbjct: 117 IQQNEMNFFQFKDLFVDASSNIVKKGGENLSLTKREYDLLVFLIKNKNTILSREMLLNQV 176 Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202 +G ++ V NVV+ +I +RKKL+ Sbjct: 177 WG-YNVVVNPNVVDLYIGYVRKKLK 200 >gi|251794486|ref|YP_003009217.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247542112|gb|ACS99130.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 240 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 12/148 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 IR S VP++ +S + + +G DD + KP E+ ARV A+ RR + Sbjct: 67 IRERSHVPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALIRRSQFSATEA 126 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 A+ PI++ S+ R V+G++ E +++ +++ GK ++ ++ + Sbjct: 127 EAASASEAEEADLAPIQLDSERRMLLVRGKLIETTFSEFEMMKLFLSHPGKVFSREELIN 186 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN 203 I G FD V + ++ HI LRKK+ Sbjct: 187 TIRG-FDSFVTDRAIDVHIVNLRKKIEQ 213 >gi|218899996|ref|YP_002448407.1| regulatory protein VanR [Bacillus cereus G9842] gi|218544954|gb|ACK97348.1| regulatory protein VanR [Bacillus cereus G9842] Length = 233 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 13/186 (6%) Query: 27 EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+ L+ EE L+ + DV I ++ + + +R +++P+I +S Sbjct: 26 EGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGIHMCMKVREIAEMPIIMLSAKTQ 85 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVS------NNRAETGPIRVFSD 136 + +G DD V KP + E++AR+ + RR +K+S N E G ++V Sbjct: 86 DMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMKMSGTSVQDENEIEIGDMKVNIV 145 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHIS 195 R + E L RE +LE L+ N+G + QI+ ++ ++A + +N V HI Sbjct: 146 TRQVIIANEEVKLTPREFEVLELLVRNQGMVLNAAQIYERVWK--EQAFQSDNTVMVHIR 203 Query: 196 KLRKKL 201 K+R+K+ Sbjct: 204 KIREKI 209 >gi|146312332|ref|YP_001177406.1| DNA-binding transcriptional regulator BaeR [Enterobacter sp. 638] gi|145319208|gb|ABP61355.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 240 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 6/153 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S+VP++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLKVSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K AE+ P+ V + ++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRELQVLDAES-PLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ Q+ + +Y + V + ++SHI LR+KL Sbjct: 181 SREQLLNQLYDDY-RVVTDRTIDSHIKNLRRKL 212 >gi|91214972|ref|ZP_01251944.1| response regulator DrrA [Psychroflexus torquis ATCC 700755] gi|91186577|gb|EAS72948.1| response regulator DrrA [Psychroflexus torquis ATCC 700755] Length = 228 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 8/131 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVS---NNRAETGPIRVFSDGRDPEVQGEVF 147 FD+G DD + KP+ + ++++V A+ RR K + N + G I + D G Sbjct: 98 FDAGADDYITKPVKPKVLMSKVKALLRRFKSNASEKNIYKIGGIVINRDEYKISSDGIEM 157 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 LPR+E +L L + K + I + ++G + V ++ HI +KLR KLG Sbjct: 158 TLPRKEFELLSLLTSEPNKVFKRDDILNTVWG-NEVVVGGRTIDVHI----RKLREKLGD 212 Query: 208 DPVDSKRFLGY 218 D + + +GY Sbjct: 213 DKFKTVKGVGY 223 >gi|66046441|ref|YP_236282.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|63257148|gb|AAY38244.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|330972923|gb|EGH72989.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 222 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 24/227 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D + D +A G G +++ + +S D+ ++ L G G +V Sbjct: 3 LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 L+ R P++ ++ S ++ +G DD + KP H E+ R+ A+ RR Sbjct: 63 LQQWR--SKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L+ + + G V DG D ++ F R+L Y M + G+ ++K+ Sbjct: 121 GLANQPTLESAGLNLDEGRQCVSRDGVDIQLTSAEF-------RLLRYFMLHPGQILSKS 173 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +Y +E + NV+E H++ LR+ KLG V+++R GY Sbjct: 174 HLSEHLYDGENER-DSNVIEVHVNHLRR----KLGRAVVETRRGQGY 215 >gi|15601007|ref|NP_232637.1| transcriptional regulator [Vibrio cholerae O1 biovar eltor str. N16961] gi|121587109|ref|ZP_01676885.1| transcriptional regulator [Vibrio cholerae 2740-80] gi|121729896|ref|ZP_01682322.1| transcriptional regulator [Vibrio cholerae V52] gi|147672355|ref|YP_001215826.1| transcriptional regulator [Vibrio cholerae O395] gi|153215292|ref|ZP_01949936.1| transcriptional regulator [Vibrio cholerae 1587] gi|153802077|ref|ZP_01956663.1| transcriptional regulator [Vibrio cholerae MZO-3] gi|153802458|ref|ZP_01957044.1| transcriptional regulator [Vibrio cholerae MZO-3] gi|153820149|ref|ZP_01972816.1| transcriptional regulator [Vibrio cholerae NCTC 8457] gi|153822561|ref|ZP_01975228.1| transcriptional regulator [Vibrio cholerae B33] gi|153826711|ref|ZP_01979378.1| transcriptional regulator [Vibrio cholerae MZO-2] gi|227811861|ref|YP_002811871.1| transcriptional regulator [Vibrio cholerae M66-2] gi|229506603|ref|ZP_04396112.1| transcriptional regulator [Vibrio cholerae BX 330286] gi|229510601|ref|ZP_04400081.1| transcriptional regulator [Vibrio cholerae B33] gi|229517268|ref|ZP_04406713.1| transcriptional regulator [Vibrio cholerae RC9] gi|229526139|ref|ZP_04415543.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426] gi|229605078|ref|YP_002875782.1| transcriptional regulator [Vibrio cholerae MJ-1236] gi|254225977|ref|ZP_04919578.1| transcriptional regulator [Vibrio cholerae V51] gi|254850562|ref|ZP_05239912.1| transcriptional regulator [Vibrio cholerae MO10] gi|255745957|ref|ZP_05419904.1| transcriptional regulator [Vibrio cholera CIRS 101] gi|262168256|ref|ZP_06035954.1| transcriptional regulator [Vibrio cholerae RC27] gi|298500087|ref|ZP_07009893.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9657634|gb|AAF96150.1| transcriptional regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548645|gb|EAX58695.1| transcriptional regulator [Vibrio cholerae 2740-80] gi|121628363|gb|EAX60865.1| transcriptional regulator [Vibrio cholerae V52] gi|124114831|gb|EAY33651.1| transcriptional regulator [Vibrio cholerae 1587] gi|124122026|gb|EAY40769.1| transcriptional regulator [Vibrio cholerae MZO-3] gi|124122376|gb|EAY41119.1| transcriptional regulator [Vibrio cholerae MZO-3] gi|125621511|gb|EAZ49844.1| transcriptional regulator [Vibrio cholerae V51] gi|126509301|gb|EAZ71895.1| transcriptional regulator [Vibrio cholerae NCTC 8457] gi|126519921|gb|EAZ77144.1| transcriptional regulator [Vibrio cholerae B33] gi|146314738|gb|ABQ19278.1| transcriptional regulator [Vibrio cholerae O395] gi|149739498|gb|EDM53732.1| transcriptional regulator [Vibrio cholerae MZO-2] gi|227011003|gb|ACP07214.1| transcriptional regulator [Vibrio cholerae M66-2] gi|227014908|gb|ACP11117.1| transcriptional regulator [Vibrio cholerae O395] gi|229336297|gb|EEO01315.1| transcriptional regulator [Vibrio cholerae bv. albensis VL426] gi|229345304|gb|EEO10277.1| transcriptional regulator [Vibrio cholerae RC9] gi|229353046|gb|EEO17986.1| transcriptional regulator [Vibrio cholerae B33] gi|229356954|gb|EEO21872.1| transcriptional regulator [Vibrio cholerae BX 330286] gi|229371564|gb|ACQ61986.1| transcriptional regulator [Vibrio cholerae MJ-1236] gi|254846267|gb|EET24681.1| transcriptional regulator [Vibrio cholerae MO10] gi|255735711|gb|EET91109.1| transcriptional regulator [Vibrio cholera CIRS 101] gi|262023499|gb|EEY42202.1| transcriptional regulator [Vibrio cholerae RC27] gi|297542068|gb|EFH78119.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|327485449|gb|AEA79855.1| transcriptional regulator [Vibrio cholerae LMA3894-4] Length = 224 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 18/170 (10%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L L + IRA +QV ++ +S ++ + +G DD + KP H E+LAR+ A+ RR Sbjct: 60 LTLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRN 119 Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 L+ ++ +RV+ + E L +E ILE + G ++ Sbjct: 120 IQTHTSNKLRFADLELCLSTMRVYRAEQPIE-------LTAKEISILELFLRKPGHIFSR 172 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +I + ++G+ + + NVV+ ++ +LRKK+ + +KR +GY + Sbjct: 173 ERILANVWGIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221 >gi|315635865|ref|ZP_07891127.1| two component response regulator [Arcobacter butzleri JV22] gi|315479844|gb|EFU70515.1| two component response regulator [Arcobacter butzleri JV22] Length = 225 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/217 (22%), Positives = 98/217 (45%), Gaps = 19/217 (8%) Query: 8 RALVKDGYIALF---GDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLEL 63 + L ++ YI F GD+G+ L N+ D+ ++ L I G +V + Sbjct: 21 KGLEEECYIVDFSTNGDEGLYLASINTY------------DLILLDIMLPIKDGIEVCKS 68 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R ++ Q P+I ++ S++ + D G +D + KP E+LAR+ R + Sbjct: 69 LR--SSNIQTPIIMLTAKDSIEDKIKGLDIGANDYLAKPFSFAELLARIRVQLRITTTTQ 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + + + + L +E +LEYL+ N+ + +++T I A+ F++ Sbjct: 127 TKLSIADLELDLLNKTASRANQNIVLTAKEFALLEYLIKNKNRVLSETTINEALSS-FED 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+V +I +LR K+ + + R +G+ I Sbjct: 186 SNISNIVNVYIYRLRNKIDKNFENKLIKTVRGIGFKI 222 >gi|296332101|ref|ZP_06874565.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675504|ref|YP_003867176.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150872|gb|EFG91757.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413748|gb|ADM38867.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 240 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 15/141 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-----------GPIRVFSDGRDPEV 142 G DD + KP RE+ ARV AI RR +++ +E G +++ D + Sbjct: 96 GADDYMTKPFSPREVNARVKAILRRSEMAAPSSEMKNDEIEGQIVIGDLKILPDHYEAYF 155 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + L +E +L YL ++G+ + + + SA++ +D A + +V+ HIS LR K+ Sbjct: 156 KENQLELTPKEFELLLYLGRHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIE 214 Query: 203 NKLGFDPVDSK--RFLGYSID 221 N P+ K R LGY ++ Sbjct: 215 NNTK-KPIYIKTIRGLGYKLE 234 >gi|237801204|ref|ZP_04589665.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024061|gb|EGI04118.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 227 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 7/159 (4%) Query: 67 IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVS 122 +RA P++ IS + + +G DD + KP E+ ARV + RR + + Sbjct: 67 LRAQGISTPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNPVSAA 126 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181 + + + R+ GE L E ++LE+LM N G+ + + IF ++G F Sbjct: 127 KTVLQVADLELNLITREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVWGYHF 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D N+++ HI +LRKK+ + + R GY I Sbjct: 187 DPGT--NLIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223 >gi|225414512|ref|ZP_03761701.1| hypothetical protein CLOSTASPAR_05735 [Clostridium asparagiforme DSM 15981] gi|225041976|gb|EEG52222.1| hypothetical protein CLOSTASPAR_05735 [Clostridium asparagiforme DSM 15981] Length = 243 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 7/144 (4%) Query: 65 RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-- 121 R +RA + +P++ +S TL D G DD + KP + + A++ A+ RR K Sbjct: 78 RSLRATGNDIPIVILSGRTEDFDTLYGLDIGADDYITKPFNPVVLGAKIKALIRRNKKAA 137 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++N GP R + + ++ PL +E +++ ++N G+ K Q++ ++G Sbjct: 138 YNAHNFITAGPFRYSNMTLEFFKNEQLIPLSSKENVMMKLFISNVGRVFTKEQLYELVWG 197 Query: 180 LFDEAVEENVVESHISKLRKKLRN 203 + V+EN + +IS LR K+ + Sbjct: 198 --NSIVDENAIMVYISHLRNKIED 219 >gi|188533449|ref|YP_001907246.1| DNA-binding transcriptional regulator BaeR [Erwinia tasmaniensis Et1/99] gi|188028491|emb|CAO96353.1| Two-component system response regulator [Erwinia tasmaniensis Et1/99] Length = 235 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 2/150 (1%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L + R +R+ S++P++ ++ L + G DD + KP RE++ARV Sbjct: 59 LMLPGMDGLSVCRELRSFSELPVVMVTAKIEEIDRLLGLEIGADDYICKPFSPREMVARV 118 Query: 113 AAIYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 AI +R + + + P++V + L E R+L+ L GK ++ Sbjct: 119 KAILKRCQRGSQKTLPVSPLQVDEQRFQASWDDKPLDLTPAEFRLLKTLSQQPGKVFSRE 178 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q+ + +Y + V + ++SHI LR+KL Sbjct: 179 QLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 207 >gi|118477412|ref|YP_894563.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225863917|ref|YP_002749295.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|300117557|ref|ZP_07055344.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|118416637|gb|ABK85056.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225786611|gb|ACO26828.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|298725092|gb|EFI65747.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 254 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ ++ + F G DD + KP E++ RV A+ +R +++ +++ Sbjct: 97 LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 156 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + + + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 157 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 215 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + + + + R LGY ++ Sbjct: 216 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 251 >gi|148543262|ref|YP_001270632.1| two component transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184152673|ref|YP_001841014.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|77745293|gb|ABB02547.1| response regulator [Lactobacillus reuteri] gi|148530296|gb|ABQ82295.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri DSM 20016] gi|183224017|dbj|BAG24534.1| two-component response regulator [Lactobacillus reuteri JCM 1112] Length = 235 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 9/151 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 LE+ + +RA +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 62 LEVAKRVRAKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQA 121 Query: 119 -LKV-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 LK +N + G + + + +GE L RE +L YL + G+ + + Sbjct: 122 TLKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ + +LR+K+ + Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIED 211 >gi|30264915|ref|NP_847292.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|49187736|ref|YP_030989.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49481633|ref|YP_038895.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50196963|ref|YP_052651.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|65322218|ref|ZP_00395177.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165869742|ref|ZP_02214400.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634021|ref|ZP_02392344.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638206|ref|ZP_02396484.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170705481|ref|ZP_02895945.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651118|ref|ZP_02933949.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567194|ref|ZP_03020109.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033098|ref|ZP_03100511.1| DNA-binding response regulator [Bacillus cereus W] gi|227817646|ref|YP_002817655.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228917502|ref|ZP_04081051.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929900|ref|ZP_04092915.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936161|ref|ZP_04098964.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948597|ref|ZP_04110876.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124416|ref|ZP_04253604.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|229601717|ref|YP_002869120.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687657|ref|ZP_05151513.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725221|ref|ZP_05187004.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736963|ref|ZP_05194669.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741997|ref|ZP_05199684.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754404|ref|ZP_05206439.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254757236|ref|ZP_05209263.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|301056364|ref|YP_003794575.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30259590|gb|AAP28778.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|49181663|gb|AAT57039.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49333189|gb|AAT63835.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50083025|gb|AAT70159.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|164714571|gb|EDR20090.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167514023|gb|EDR89391.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530822|gb|EDR93524.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170129606|gb|EDS98469.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172082944|gb|EDT68006.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561698|gb|EDV15668.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994527|gb|EDX58482.1| DNA-binding response regulator [Bacillus cereus W] gi|227007073|gb|ACP16816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228659068|gb|EEL14720.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|228811096|gb|EEM57438.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823506|gb|EEM69335.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829816|gb|EEM75438.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842174|gb|EEM87273.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266125|gb|ACQ47762.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|300378533|gb|ADK07437.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 232 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172 KV+ N++ + G + + + R V GE L +E IL YL+A+ K+V + Sbjct: 124 LNQPKVAENKSALQVGGVTIDPERRTVNVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 IF ++ D+ E N V HI LRKKL Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210 >gi|330957643|gb|EGH57903.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 229 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 102/227 (44%), Gaps = 12/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + D + ++ NS E E S R D+ ++ + + Sbjct: 4 VLLVDDDRELTDMLSQYLTRERFNVTCTNSAEEGEVEALSGRHDIVVLDIMM--PRISGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R IRA SQVP+I ++ + + G DD V KP E++AR+ AI RR++ Sbjct: 62 EVLRRIRAQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRS 121 Query: 121 VSNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 V N A G + ++ R+ G++ L E +LE L + G+ V+K + Sbjct: 122 VPLNEAVRDVIHAGELMLWPGKREARWHGQLLELTGNEFCLLEELARHAGQLVSKQNLSM 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220 G A + ++ HIS +R KL RN + S R LGY + Sbjct: 182 NALG-RPLARYDRSIDVHISSIRHKLGPRND-DRSWIQSVRNLGYML 226 >gi|330830132|ref|YP_004393084.1| Tricarboxylic transport regulatory protein [Aeromonas veronii B565] gi|328805268|gb|AEB50467.1| Tricarboxylic transport regulatory protein [Aeromonas veronii B565] Length = 224 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 11/150 (7%) Query: 61 LELPRI--------IRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 +E+P++ +R+ Q VP++ ++ +++ + ++G DD + KP E+ AR Sbjct: 52 IEMPKLDGLAVLGRLRSRGQGVPVLLLTARGAVEERICGLNAGADDYLAKPFDLGELDAR 111 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + A+ RR + G + + DG + P RE +L LM G+ VAK Sbjct: 112 LRALLRRSESGGAELRLGRLTLHPDGYFLLADARLALTP-RELALLTALMYRHGRPVAKG 170 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q+F ++ L DE V + ++ +I +LRKKL Sbjct: 171 QLFEQVFNLDDE-VGLDSIDLYIHRLRKKL 199 >gi|299537509|ref|ZP_07050803.1| sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298727070|gb|EFI67651.1| sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 224 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 75/155 (48%), Gaps = 3/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 + ++ +PL+ ++ + F+ G DD + KP E+ RV A+ +R ++ +++ Sbjct: 69 KMNTDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYRIGHSQTI 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + G + + +V LP +E +L L G+ + Q+ I+G+ D A + Sbjct: 129 QLGQVTLDRQTYKVMRGKDVISLPLKEFELLYKLAETPGQVYTREQLIDQIWGI-DYAGD 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ HI +LR++ F +D+ R LGY ++ Sbjct: 188 NRTIDVHIKRLRERFNTITDFH-IDTIRGLGYRLE 221 >gi|319763169|ref|YP_004127106.1| phosphate regulon transcriptional regulatory protein phob [Alicycliphilus denitrificans BC] gi|330825232|ref|YP_004388535.1| two component transcriptional regulator PhoB [Alicycliphilus denitrificans K601] gi|317117730|gb|ADV00219.1| phosphate regulon transcriptional regulatory protein PhoB [Alicycliphilus denitrificans BC] gi|329310604|gb|AEB85019.1| two component transcriptional regulator PhoB, winged helix family [Alicycliphilus denitrificans K601] Length = 233 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 12/171 (7%) Query: 57 GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G L+L R R+ ++ VP++ ++ + D+G DD + KP +E+LAR+ Sbjct: 60 GMSGLQLARKWRSAARTKGVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119 Query: 114 AIYRRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 A+ RR +V+++ A G + + + QG+ L E ++L YLM + + ++ Sbjct: 120 AVLRRRAPEQVADSVA-IGALSLDAATHRASFQGQPLKLGPTEFKLLHYLMKHAERVHSR 178 Query: 171 TQIFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Q+ I+G D +EE V+ H+ +LR+ L +++ R GY + Sbjct: 179 AQLLDKIWG--DHVYIEERTVDVHVKRLREALGEASAM--LETVRGAGYRL 225 >gi|291458269|ref|ZP_06597659.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str. F0262] gi|291418802|gb|EFE92521.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str. F0262] Length = 240 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 21/214 (9%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V DD+ +V+ I L G EGF L+ + + D ++ +I Sbjct: 4 ILVCDDDKQIVEAISIYLAG------EGFRLLKAYDGYDALKIMDQEKVDLLIIDVMMPG 57 Query: 61 LELPRI---IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 L+ R IR S +P+I +S + + G DD + KP + E++ARV + R Sbjct: 58 LDGIRTTLKIREKSSIPIIILSAKGEDNDKILGLNIGADDYITKPFNPLEMVARVKSQLR 117 Query: 118 RLKVSNNRAETGPI-RVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R N E G + ++S G ++ V+GE L E IL L+ N GK Sbjct: 118 RYTQLGNIGEAGNLDSIYSSGGLVINDDTKEVTVEGEPVKLTPIEYNILLLLVKNAGKVF 177 Query: 169 AKTQIFSAIYGLFDEAV-EENVVESHISKLRKKL 201 + +I+++I+ ++A+ +N V HI +R+K+ Sbjct: 178 SIDEIYTSIWN--EQAIGADNTVAVHIRHIREKI 209 >gi|271498801|ref|YP_003331826.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270342356|gb|ACZ75121.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 223 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 23/217 (10%) Query: 8 RALVKDGY---IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLEL 63 + L + GY +A G DG+ FN+LE D ++ L G G +++E+ Sbjct: 18 KGLTEAGYAVDLARNGTDGL----FNALEHSY--------DAIILDVMLPGLNGWQIIEM 65 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 +R S VP++ ++ L + + G DD + KP E++ R+ + RR V Sbjct: 66 ---LRKKSDVPVLFLTARDQLHDRIHGLELGADDYLIKPFSFTELVLRIRTLLRRGVVRE 122 Query: 124 -NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181 + +R+ R Q V PL +E +L L+ G+ +++T I S ++ + F Sbjct: 123 ADHYAVADLRLDVLRRKATRQEVVIPLTNKEFMLLHLLVRREGEVLSRTLIASQVWDMNF 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D + NVV+ + +LR K+ + + R +GY Sbjct: 183 DS--DTNVVDVAVKRLRAKIDKPFDIKLIHTVRGIGY 217 >gi|217960013|ref|YP_002338569.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222096097|ref|YP_002530154.1| DNA-binding response regulator [Bacillus cereus Q1] gi|229139204|ref|ZP_04267779.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26] gi|217063457|gb|ACJ77707.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221240155|gb|ACM12865.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228644263|gb|EEL00520.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26] Length = 231 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 13/207 (6%) Query: 27 EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+N + + +E LQ + ++ + ++ LE+ + +R ++ VP++ +S Sbjct: 25 EGYNIYKAYDGDEALQMISTYEIDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAETGPIRVFS----- 135 + +G DD + KP + E++ARV A+ RR N + E G IR+ S Sbjct: 85 DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSPKNEDGMIRIRSAEIHK 144 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 +V GE L E IL L +N G+ + +IF ++ D V HIS Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203 Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221 LR KL + G + + +GY I+ Sbjct: 204 NLRDKLETGMNGEKFIHTVWGVGYKIE 230 >gi|23502991|ref|NP_699118.1| phosphate regulon transcriptional regulatory protein Phob [Brucella suis 1330] gi|62290982|ref|YP_222775.1| phosphate regulon transcriptional regulatory protein Phob [Brucella abortus bv. 1 str. 9-941] gi|82700892|ref|YP_415466.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|161620053|ref|YP_001593940.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella canis ATCC 23365] gi|163844158|ref|YP_001628563.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella suis ATCC 23445] gi|189025195|ref|YP_001935963.1| transcriptional regulator [Brucella abortus S19] gi|254690277|ref|ZP_05153531.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 6 str. 870] gi|254696392|ref|ZP_05158220.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 2 str. 86/8/59] gi|254700774|ref|ZP_05162602.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella suis bv. 5 str. 513] gi|254705144|ref|ZP_05166972.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella suis bv. 3 str. 686] gi|254707339|ref|ZP_05169167.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella pinnipedialis M163/99/10] gi|254709119|ref|ZP_05170930.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella pinnipedialis B2/94] gi|254713455|ref|ZP_05175266.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella ceti M644/93/1] gi|254716189|ref|ZP_05178000.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella ceti M13/05/1] gi|254731306|ref|ZP_05189884.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 4 str. 292] gi|256030645|ref|ZP_05444259.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella pinnipedialis M292/94/1] gi|256045749|ref|ZP_05448627.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella melitensis bv. 1 str. Rev.1] gi|256060106|ref|ZP_05450288.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella neotomae 5K33] gi|256112468|ref|ZP_05453389.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella melitensis bv. 3 str. Ether] gi|256258530|ref|ZP_05464066.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 9 str. C68] gi|260546246|ref|ZP_05821986.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260563045|ref|ZP_05833531.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260567387|ref|ZP_05837857.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260755816|ref|ZP_05868164.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260759039|ref|ZP_05871387.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260760764|ref|ZP_05873107.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884841|ref|ZP_05896455.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261217962|ref|ZP_05932243.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261314822|ref|ZP_05954019.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261316619|ref|ZP_05955816.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261321188|ref|ZP_05960385.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261324082|ref|ZP_05963279.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261751283|ref|ZP_05994992.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261755848|ref|ZP_05999557.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|265987691|ref|ZP_06100248.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265992165|ref|ZP_06104722.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265993903|ref|ZP_06106460.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|294851371|ref|ZP_06792044.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. NVSL 07-0026] gi|297247369|ref|ZP_06931087.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella abortus bv. 5 str. B3196] gi|23349030|gb|AAN31033.1| phosphate regulon transcriptional regulatory protein Phob [Brucella suis 1330] gi|62197114|gb|AAX75414.1| PhoB, phosphate regulon transcriptional regulatory protein Phob [Brucella abortus bv. 1 str. 9-941] gi|82616993|emb|CAJ12102.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Brucella melitensis biovar Abortus 2308] gi|161336864|gb|ABX63169.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella canis ATCC 23365] gi|163674881|gb|ABY38992.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella suis ATCC 23445] gi|189020767|gb|ACD73489.1| Transcriptional regulatory protein [Brucella abortus S19] gi|260096353|gb|EEW80229.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260153061|gb|EEW88153.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260156905|gb|EEW91985.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260669357|gb|EEX56297.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671196|gb|EEX58017.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675924|gb|EEX62745.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260874369|gb|EEX81438.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260923051|gb|EEX89619.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261293878|gb|EEX97374.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261295842|gb|EEX99338.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261300062|gb|EEY03559.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261303848|gb|EEY07345.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261741036|gb|EEY28962.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261745601|gb|EEY33527.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|262764884|gb|EEZ10805.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263003231|gb|EEZ15524.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|264659888|gb|EEZ30149.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|294819960|gb|EFG36959.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. NVSL 07-0026] gi|297174538|gb|EFH33885.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella abortus bv. 5 str. B3196] Length = 228 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 20/171 (11%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + G DD V KP E+LARV A+ R Sbjct: 64 IELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 123 Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R LKV + + RV+ ++ EV L E R+LEY M + G+ Sbjct: 124 RANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSPGRVF 176 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +++Q+ ++G D V++ V+ H+ +LRK + D + + R GYS Sbjct: 177 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKAINVGRAADSIRTVRGAGYS 226 >gi|325687129|gb|EGD29152.1| DNA-binding response regulator [Streptococcus sanguinis SK72] Length = 234 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD + KP +E+LAR+ ++ RR+ + N + G + G + L Sbjct: 92 LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202 +E +++E+LM N K ++ +IF ++ DE ++E V +IS LR+KL+ Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWSKDEDEDLDEGFVWIYISYLRQKLK 204 >gi|313904678|ref|ZP_07838052.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313470471|gb|EFR65799.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 220 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 14/141 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LK 120 IR +S ++ +S + + L + G DD + KP +LA++ I++R L+ Sbjct: 67 IRENSNAHILIVSARDTKEDKLKGLNIGADDFIEKPYDIDILLAKIDGIFKRKYGVDELR 126 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N G ++ DG + EV + F L R LM N+G + K +F++I+G Sbjct: 127 DANIVLNIGKQKLAVDGTEVEVTAKEFELLR-------LLMENKGVNLKKEFLFNSIWG- 178 Query: 181 FDEAVEENVVESHISKLRKKL 201 +D E+ + HI LR+K+ Sbjct: 179 YDSDSEQQTLTVHIKHLREKI 199 >gi|313890279|ref|ZP_07823913.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pseudoporcinus SPIN 20026] gi|313121384|gb|EFR44489.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pseudoporcinus SPIN 20026] Length = 236 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 24/179 (13%) Query: 48 AIEAFLIGKGEKV-----------LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 AI AF GK + V LE+ + IR S +P+I +S S + + G D Sbjct: 37 AIAAFEEGKPDLVILDLMLPEMDGLEVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGAD 96 Query: 97 DVVNKPIHHREILARVAAIYRRLKV------------SNNRAETGPIRVFSDGRDPEVQG 144 D V KP +RE+LARV A RR + N G +++ D + G Sbjct: 97 DYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGNQELTIGNLQILPDAFLAKKYG 156 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + L RE +L +L + G+ + + + ++G +D + V+ + +LR+K+ + Sbjct: 157 KEVELTHREFELLHHLANHIGQVMTREHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 214 >gi|310640161|ref|YP_003944919.1| response regulators consisting of a chey-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] gi|309245111|gb|ADO54678.1| Response regulators consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] Length = 219 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 7/145 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R+ S VP+I ++ + F+ G DD V KP + ++AR A+ +R++ Sbjct: 56 EVCRQVRSRSGVPIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALMKRVE- 114 Query: 122 SNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + E+ +R S + EV L +E +L L+ N+G V++ I + Sbjct: 115 GHVQPESHILRFGSAMLNTMAHRLEVDQAEVELTPKEYELLRLLIHNKGIVVSRDAILNR 174 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++G+ E + VV++HI KLR KL Sbjct: 175 VWGINFEG-DTRVVDTHIKKLRSKL 198 >gi|304405338|ref|ZP_07386997.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304345377|gb|EFM11212.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 234 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 21/191 (10%) Query: 49 IEAFLIGKGEKVL---ELP--------RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDD 97 +E FL K + VL LP R IRA S P+I IS S + ++G DD Sbjct: 38 LECFLAVKPDLVLLDVNLPKFDGFYWCRQIRAQSTCPIIFISARDSQMDQVMALENGADD 97 Query: 98 VVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--RDPE-----VQGEVFPLP 150 + KP ++A++ + RR + + V S G PE QG L Sbjct: 98 YITKPFDIEIVIAKIRSQLRRAYGAYAAGQEQERTVTSAGIVLYPERFVVSCQGNSIELT 157 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDP 209 ++E +LE LM G+ V++ ++ ++ D+ +++N + +I+++R+KL++ D Sbjct: 158 QKEAALLEVLMLKEGRVVSRERLLDLMWE--DQHFIDDNTLNVYITRVRRKLKDIGIGDR 215 Query: 210 VDSKRFLGYSI 220 +++ R GY + Sbjct: 216 IETVRGAGYRL 226 >gi|292900777|ref|YP_003540146.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291200625|emb|CBJ47757.1| two-component response regulator [Erwinia amylovora ATCC 49946] Length = 219 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 101/222 (45%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++++D L++ G +AL G+ N+ + +LQS V G + Sbjct: 3 ILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGLPDRDGADL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R + +P++ +S +L +D D+G DD + KP E+ ARV A+ RR + Sbjct: 63 LRQWR--KEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRRYQ 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+N + G I + + V + + +E +L L+ G+ V + + +Y Sbjct: 121 GQSDNLLQHGDITLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D+ N +E H+ LR+ KLG D + + R +GY ++ Sbjct: 181 WQDD-TSSNTLEVHMHNLRR----KLGKDRIKTVRGVGYRLE 217 >gi|209527854|ref|ZP_03276344.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209491711|gb|EDZ92076.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 243 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR+ Sbjct: 71 LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDKNGASG 130 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ + IR+ ++ R E L E +LE L++ G+ ++++I ++G Sbjct: 131 IPSSGVIQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 190 Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203 E V+ VV+ HIS+LR KL + Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215 >gi|197336075|ref|YP_002155282.1| transcriptional regulatory protein PhoP [Vibrio fischeri MJ11] gi|197317565|gb|ACH67012.1| transcriptional regulatory protein PhoP [Vibrio fischeri MJ11] Length = 226 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 2/157 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 + +I R P++ ++ + Q ++ ++G DD + KP E++AR+ A+ RR Sbjct: 64 IKQIRRKEINSPILILTARGNWQDKVEGLEAGADDYLVKPFQSEELIARLYALARRAAGF 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + ++ I + + V G+ L E I YL+ N K ++K Q A+Y Sbjct: 124 TQSKVTAENIELDIKAKTIHVDGQFLQLTSFEYDIAAYLIKNSLKIISKQQFVDALYQE- 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D V+ N +E IS+LRKK + + + R GY Sbjct: 183 DSEVQLNNIEVIISRLRKKFAAVGHSELITTVRGQGY 219 >gi|154500201|ref|ZP_02038239.1| hypothetical protein BACCAP_03865 [Bacteroides capillosus ATCC 29799] gi|150270933|gb|EDM98207.1| hypothetical protein BACCAP_03865 [Bacteroides capillosus ATCC 29799] Length = 233 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 7/141 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R +P+I +S L++ ++ G DD + KP + E+LARV A RR + ++ A Sbjct: 69 LRKSRTMPIIVLSAKAGLESRVNVLKLGADDFIPKPFDNAEVLARVEAQLRRYRQFSSPA 128 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + D G+ + RE IL LM+ K + Q++ ++G Sbjct: 129 GEKHVLTWGDLILDKESVSVTAAGKDVTVTAREFEILALLMSYPKKVFTREQLYEQVWG- 187 Query: 181 FDEAVEENVVESHISKLRKKL 201 + ++N V HIS LR KL Sbjct: 188 GEYFGDDNTVNVHISNLRSKL 208 >gi|145589778|ref|YP_001156375.1| two component transcriptional regulator [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048184|gb|ABP34811.1| two component transcriptional regulator, winged helix family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 237 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 20/136 (14%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE--------- 141 DSG DD V KP +E++ARV A+ RR +TGP+ V DP Sbjct: 95 LDSGADDYVTKPFSPKELVARVRAMLRR---QMPIEDTGPLTVGPLKLDPSSHRVLATWP 151 Query: 142 -VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 + + L E R+L++ MAN + ++ + ++G + +EE V+ HI +LR Sbjct: 152 NAESKAIALGPTEFRLLQFFMANPERVHSRASLLDKVWG-SEVYIEERTVDVHIKRLRAA 210 Query: 201 LRNKLGFDPVDSKRFL 216 L P D R++ Sbjct: 211 LV------PFDCDRYI 220 >gi|52143461|ref|YP_083367.1| response regulator [Bacillus cereus E33L] gi|51976930|gb|AAU18480.1| response regulator [Bacillus cereus E33L] Length = 254 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ ++ + F G DD + KP E++ RV A+ +R +++ +++ Sbjct: 97 LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 156 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + + + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 157 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 215 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + + + + R LGY ++ Sbjct: 216 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 251 >gi|42780293|ref|NP_977540.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42736212|gb|AAS40148.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 234 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 19/229 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 7 LLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNDYDLIILDVML--PGQSGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 ++ IIR + P+ ++ S + F G DD + KP + E++AR+ A RR Sbjct: 65 DICPIIRQKTDCPIFFLTAKASDLDKISGFAHGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 119 -LKVSNNRAETGPIRVFSDGRDP---EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +A + F+ RD V G V + ++L + N +K +I+ Sbjct: 125 QVMTHEQKAHSSSFGRFAIDRDSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEIY 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 ++G ++N V HI KLR+K+ DP + + R LGY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIEQ----DPSKPEYIKTVRGLGY 229 >gi|315643933|ref|ZP_07897103.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315280308|gb|EFU43597.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 231 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 70/168 (41%), Gaps = 9/168 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R IR S +P++ +S + +G DD + KP + E+ RV + RR Sbjct: 63 IDTCRRIRETSSIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLRRST 122 Query: 121 VSNNRAETGPI-RVFSDGRD-------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N + G R+ DG D G L RE IL L G+ + Sbjct: 123 QYNTELQQGHTDRIQIDGLDINRTTHEVTANGRSVSLTAREFEILYLLARQPGRIFSAED 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 IF ++ V N V HIS LR KL +LG+ + + +GY I Sbjct: 183 IFQQVWK-EKYYVSNNTVMVHISNLRDKLEKELGYKLIQTVWGVGYKI 229 >gi|311070610|ref|YP_003975533.1| YvrH protein [Bacillus atrophaeus 1942] gi|310871127|gb|ADP34602.1| YvrH [Bacillus atrophaeus 1942] Length = 236 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 7/144 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 IR S VP+I +S + G DD + KP +E+ RV A RR Sbjct: 72 IRELSNVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRANYSQSKG 131 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++N + GP ++ + GE L +E ++++Y + N ++K +++A++G Sbjct: 132 IADNIIKVGPFQLSERKAELTKNGEPVELKPKELKLMKYFLQNPNMVISKETLYNAVWGE 191 Query: 181 FDEAVEENVVESHISKLRKKLRNK 204 D +N + HI +LR+K+ K Sbjct: 192 -DSFGFDNTIMVHIRRLREKIETK 214 >gi|300691962|ref|YP_003752957.1| two-component system response, response regulator receiver, transcriptional regulatory protein [Ralstonia solanacearum PSI07] gi|299079022|emb|CBJ51684.1| putative two-component system response, response regulator receiver, transcriptional regulatory protein [Ralstonia solanacearum PSI07] Length = 237 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFP 148 +G DD V KP+ E++ARV A+ RR S R GP V GR + G Sbjct: 96 AGADDYVVKPVRRAELVARVGALLRRAAPRTGESLERMRVGPYAVDPLGRVLTLHGSQVE 155 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L RE + YL N GK V + I A++G + + +HISKLR KL Sbjct: 156 LSPREFDLALYLFRNVGKLVPRELIEQAVWG-RSIGPDSRTLATHISKLRLKL 207 >gi|299146067|ref|ZP_07039135.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] gi|298516558|gb|EFI40439.1| DNA-binding response regulator [Bacteroides sp. 3_1_23] Length = 224 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 85/166 (51%), Gaps = 8/166 (4%) Query: 61 LELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 LEL R+ R Q+P+I ++ + + + D+G DD + KP +E+ AR+ A+ RR Sbjct: 61 LELCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRR 120 Query: 119 LK-VSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K V +N + + + R + +G++ L +E R+LEY M ++G +++ + Sbjct: 121 NKEVPSNLLTCDNLVLDCNTRKAK-RGDIDIDLTVKEYRLLEYFMTHQGVALSRITLLKD 179 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ FD N+V+ +++ LR K+ + + LGY ++ Sbjct: 180 VWDKNFD--TNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIMN 223 >gi|298247032|ref|ZP_06970837.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297549691|gb|EFH83557.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 247 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 29/139 (20%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---------------------- 128 + G DD ++KP RE++ARV AI RR+ + A+T Sbjct: 91 LEVGADDYISKPFSMRELMARVRAILRRVDLDQRLAQTLQQARTEPPVAQISPTITPTPV 150 Query: 129 ------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 GP+ + + R ++ GE L RE +L L ++ G+ ++ + ++G +D Sbjct: 151 QPPIIRGPLEIDPNARIAKLHGESILLTPREYELLILLASHPGRAFSREFLLQQLWG-YD 209 Query: 183 EAVEENVVESHISKLRKKL 201 + V++H+++LRKKL Sbjct: 210 YDGFDRTVDTHVTRLRKKL 228 >gi|295105634|emb|CBL03178.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 228 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/228 (24%), Positives = 100/228 (43%), Gaps = 16/228 (7%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEK 59 M +++D A +++ +G ++GF S E +A ++ ++ L G+ G Sbjct: 1 MIYIVEDDASIRELEQYALQSNGYEVQGFESAEPFWQAMRAAEPELVILDVMLPGEDGFS 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L+ R + ++P+I ++ S T+ D G DD + KP E L+RV RR Sbjct: 61 ILKKLRNTPSLRKLPIIMVTAKSSELDTVRGLDCGADDYIAKPFGIMEFLSRVRVALRR- 119 Query: 120 KVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + E P I++ + V L +E +L L+ N V + Sbjct: 120 ----SAPEVRPDVLVFHEIQLDNARHSVTVNSTPVELTYKEYCLLRLLLENTSLVVTRET 175 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++G D +VE V+ HI LRKKL + + + + R +GY + Sbjct: 176 ILQVVWGT-DISVESRTVDMHIRTLRKKLGDAGRY--ICTVRKVGYKL 220 >gi|260891424|ref|ZP_05902687.1| transcriptional activator protein Irlr [Leptotrichia hofstadii F0254] gi|260858807|gb|EEX73307.1| transcriptional activator protein Irlr [Leptotrichia hofstadii F0254] Length = 200 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 4/132 (3%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAET 128 H+ V ++ D S + D G DD + KP E+LAR+ A+ RR S+N+ Sbjct: 72 HTSVLMLTARD--SADDKVKGLDLGADDYIVKPFDFNELLARIRAVVRRKYGNSSNKLVI 129 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + + + G+ L +E +LEYLM ++ + +++ QI ++ FD + N Sbjct: 130 GDLILDTSEKSVTRAGKQIELTGKEYEVLEYLMQSKNRILSRDQIKEHVWD-FDYEGDSN 188 Query: 189 VVESHISKLRKK 200 +++ I +RKK Sbjct: 189 IIDVLIKNIRKK 200 >gi|259503210|ref|ZP_05746112.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus antri DSM 16041] gi|259168802|gb|EEW53297.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus antri DSM 16041] Length = 226 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 16/153 (10%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R IR S VP+I I+ D G+DD + KP E+LAR+ I RR+ Sbjct: 63 LTVLRRIRQTSDVPVIMITARSQTADIRLALDQGLDDYITKPFEIEELLARIRVILRRI- 121 Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 NR +T GP + V G L +E ++ LM + G ++ + Sbjct: 122 ---NREQTLPGGYAFGPFNLDLLRHRFSVAGREIHLTPKEFALMAALMKDPGIVKSRDDL 178 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 + I+G +D A + N V+ +I + LRNKLG Sbjct: 179 LNQIWG-YDFAGQTNTVDVYI----RALRNKLG 206 >gi|257875264|ref|ZP_05654917.1| response regulator [Enterococcus casseliflavus EC20] gi|257809430|gb|EEV38250.1| response regulator [Enterococcus casseliflavus EC20] Length = 233 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 12/148 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +EL +IIR P+I IS Q + D G DD V KP E+ AR+ R + Sbjct: 62 MELLKIIRKRMNTPIIVISARKDEQDKVQALDLGADDYVTKPFSTNELFARIRTALRHKE 121 Query: 121 VSNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ + PI V F + Q E+ L + E RI+ + N GK V + Sbjct: 122 TTS--FSSSPILVNKELTIDFEKKILYKNQNEIH-LTKNEYRIMAVMFKNLGKVVTYDTL 178 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 S ++G F A + + +IS +RKK+ Sbjct: 179 TSEVWGPF--AADAQTLRVNISNIRKKI 204 >gi|229917890|ref|YP_002886536.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229469319|gb|ACQ71091.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 224 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 13/137 (9%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPL 149 F +G DD V KPI E+ R+ A+ RR ++ + ++ + + E E L Sbjct: 92 FHAGADDYVVKPIDLEELELRIEALLRRARIHHSHQIQLNDCVLDETTMTLETTSETIEL 151 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 PR+E +L +L + + + Q+ I+G ++ E V+ HI++LR +L+ P Sbjct: 152 PRKEFELLYFLATHLNQVFTRQQLLDRIWG-YETESETRTVDVHINRLRARLK------P 204 Query: 210 VDSKRF-----LGYSID 221 +D+ + LGY ++ Sbjct: 205 IDAFQISTVWGLGYRLE 221 >gi|169826021|ref|YP_001696179.1| YxdJ [Lysinibacillus sphaericus C3-41] gi|168990509|gb|ACA38049.1| YxdJ [Lysinibacillus sphaericus C3-41] Length = 234 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 9/161 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118 R +R H+ P+I IS + ++G DD + KP ++ +LA++ + RR Sbjct: 67 RQLRQHTTCPIIFISARSGEMDQIFALENGGDDFITKPFNYEIVLAKIRSHLRRTYGEYA 126 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G + + + + PL ++E ILE LM N K V + Q+ ++ Sbjct: 127 TRQEERTIKQGQLILHLERMELHKNELEIPLQKKECIILELLMGNAPKVVTREQLLEELW 186 Query: 179 GLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D+A V+EN + +++++RKKL + +++ R GY Sbjct: 187 D--DQAFVDENTLNVNMTRVRKKLADYHISSTIETVRGAGY 225 >gi|152983903|ref|YP_001348990.1| two-component response regulator KdpE [Pseudomonas aeruginosa PA7] gi|150959061|gb|ABR81086.1| two-component response regulator KdpE [Pseudomonas aeruginosa PA7] Length = 230 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/225 (28%), Positives = 103/225 (45%), Gaps = 25/225 (11%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF---EEWLQSSA--REDVSAIEAFLIGK 56 +LIDD ++ F ++ +G+ LE EE L +A R D+ ++ L + Sbjct: 8 ILLIDDEPQIRK-----FLRISLTAQGYRVLEAGNGEEGLAQAALNRPDLVVLDLGLPDR 62 Query: 57 -GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ +L R +R S VP++ +S S + D G +D V KP +E LARV + Sbjct: 63 DGQDIL---RDLREWSAVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVL 119 Query: 116 YRRLKVSNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R+ + GP++V R + G L R+E +L L + G+ V + Q Sbjct: 120 LRQAAQGESPEAAVTVGPLQVDLAYRRVSLAGAEVALTRKEYAVLAALARHLGRVVTQQQ 179 Query: 173 IFSAIYGLFDEAVEENVVESH-ISKLRKKLRNKLGFDPVDSKRFL 216 + I+G +V ++H + + LR KLG DP S RFL Sbjct: 180 LLRDIWG------PTHVEDTHYLRVVVGHLRQKLGDDPA-SPRFL 217 >gi|83717734|ref|YP_439572.1| DNA-binding response regulator IrlR [Burkholderia thailandensis E264] gi|167577990|ref|ZP_02370864.1| DNA-binding response regulator IrlR [Burkholderia thailandensis TXDOH] gi|167616115|ref|ZP_02384750.1| DNA-binding response regulator IrlR [Burkholderia thailandensis Bt4] gi|257142704|ref|ZP_05590966.1| DNA-binding response regulator IrlR [Burkholderia thailandensis E264] gi|83651559|gb|ABC35623.1| DNA-binding response regulator IrlR [Burkholderia thailandensis E264] Length = 229 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 23/220 (10%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66 + L + G+IA + +DGV+ G + E EE+ D+ ++ L G G VLE Sbjct: 18 KGLTEAGFIADWVEDGVT--GLHQAETEEY-------DLIILDVMLPGHDGWTVLER--- 65 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R P++ ++ + + + G DD V KP E++ARV +I RR R Sbjct: 66 LRRERSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRR---GQGRE 122 Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181 T + + R QG+V L +E +L LM G+ + + I S ++ + F Sbjct: 123 STILKIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDMNF 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV++ I +LR K+ + + + R +GY ++ Sbjct: 183 NS--DTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220 >gi|17549073|ref|NP_522413.1| response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431324|emb|CAD18003.1| response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 246 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 5/115 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEV 146 F++GVDD++ E+ ARV + RR + A GP R+ R V Sbjct: 92 FEAGVDDLLTGHFTAEELRARVQRVLRRSEQPRQNASMHVVVGPYRLCRLTRTATVNEAP 151 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L RE L ++ G +++ QI SA++G D ++ E +E HI KLRKKL Sbjct: 152 IRLTAREFATAWLLFSSPGTFLSRQQIASAVWGA-DASIVERSIEQHIYKLRKKL 205 >gi|307718247|ref|YP_003873779.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] gi|306531972|gb|ADN01506.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] Length = 226 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 12/181 (6%) Query: 48 AIEAFLIGKGEKVLELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 AI L+ G LE+ R++R S +P++ ++ + + G DD + KP Sbjct: 47 AIILDLMLPGMSGLEVCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFS 106 Query: 105 HREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEY 159 R +LAR+ A+ +R + R++ PI V DP V+G L E IL + Sbjct: 107 PRILLARLKAVLKRTRPPEGRSDE-PIVVGELVIDPHRYSVRVRGREIILSATEFAILSF 165 Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 L N G ++ QI A+ G D V E V+ I +RKKL + D + + R +GY Sbjct: 166 LARNPGWVFSRQQIIDAVKG-EDYPVTERAVDVQILSIRKKLGD--ARDYIQTVRGVGYR 222 Query: 220 I 220 + Sbjct: 223 L 223 >gi|271969946|ref|YP_003344142.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513121|gb|ACZ91399.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 229 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 4/144 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R+IRA S VP++ ++ + L D G DD V KP RE++ARV + RR++ Sbjct: 62 LDVCRVIRAESDVPVLMLTARATEDDLLVGLDLGADDYVTKPYSPRELMARVRTLLRRVR 121 Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S + ET G + V S V G E RILE L A + + Q+ + Sbjct: 122 RSRDPEETLKVGDLLVDSARHRVSVAGSPVDCTPAEFRILETLAAQPERVFTRKQLLEEV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G FD + V+ H+ LRKK+ Sbjct: 182 HG-FDRFITRRTVDVHMLNLRKKI 204 >gi|302877112|ref|YP_003845745.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|302579969|gb|ADL53981.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 222 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR+ S VP+I I+ + L G DD + KP + + +LAR+ ++ +R + N Sbjct: 67 IRSFSTVPIIFITSRDTNVDELMSITLGGDDFITKPYNAQILLARINSLLKRSYPNENAG 126 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E I++ E + + L + E +IL YL+ N+G+ V + I L+D Sbjct: 127 EFIEYNGIKLNILSSKVEYEDKEIELTKNELKILHYLLINKGRIVTRVDIMEY---LWDS 183 Query: 184 A--VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A V +N + +I++LR K + + + +KR GY + Sbjct: 184 ALFVNDNTLTVNITRLRNKFEDIGVKEFIKTKRGQGYIV 222 >gi|291298248|ref|YP_003509526.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567468|gb|ADD40433.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 233 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 98/217 (45%), Gaps = 27/217 (12%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 R L ++GY DG+S G S R D+ ++ L +E+ R + Sbjct: 23 RYLEREGYRVTLAADGLS--GLAEYR-------SGRPDLVVLDLML--PKLPGIEVCRAL 71 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R S+VP+I ++ + G DD ++KP RE++ RVAA+ RR V AE Sbjct: 72 RIESEVPVIMLTALGDESDRIAGLSVGADDYLSKPFSPRELVLRVAAVLRR-AVRTEAAE 130 Query: 128 TGPIRVFSDGR---DP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 P +DG DP ++G L RE +LE+L+ + G+ ++ ++ ++ Sbjct: 131 R-PGEQLTDGELILDPGSRVATLRGTKLNLTVREFDLLEFLLRHPGQVFSRAELLERVWD 189 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 +++ V H+ +LR+K+ + P KR + Sbjct: 190 W--TFGDQSTVTVHVRRLREKIEDA----PAQPKRLV 220 >gi|227889097|ref|ZP_04006902.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200] gi|268318621|ref|YP_003292277.1| two-component system response regulator [Lactobacillus johnsonii FI9785] gi|227850326|gb|EEJ60412.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200] gi|262396996|emb|CAX66010.1| two-component system response regulator [Lactobacillus johnsonii FI9785] Length = 235 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 9/151 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R +P+I ++ + + + G DD V KP +RE++ARV A RR Sbjct: 62 LEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRD 121 Query: 121 VSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ E G + + + E GE L RE +L YL + G+ + + Sbjct: 122 LTQKATEDDEDKNITIGNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ + +LR+K+ + Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIED 211 >gi|225868178|ref|YP_002744126.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225701454|emb|CAW98586.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 236 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 13/155 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S +P+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 61 LEVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120 Query: 121 -----VSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 V+ A +G +++ D + G+ L RE +L +L + G+ + Sbjct: 121 TIETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVELTHREFELLHHLANHIGQVM 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ + +LR+K+ + Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 214 >gi|188579674|ref|YP_001923119.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179343172|gb|ACB78584.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 232 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 9/167 (5%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L R +R P++ +S + + +G DD + KP E+LAR + RR Sbjct: 60 LSLVRSLREQEIATPVLILSALGQVDDRVKGLRAGGDDYLPKPYAFSELLARTEVLARRR 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++E RV D G L RE R+LEYLM + G+ V +T + Sbjct: 120 AAATGQSEATAYRVGDLELDRLSHRVTRAGREIVLQPREFRLLEYLMRHAGQVVTRTMLL 179 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ FD + NV++ H+S+LR K+ + + R GY I Sbjct: 180 EHVWDYHFDP--QTNVIDVHVSRLRSKIDRGFEHPMIHTVRGAGYVI 224 >gi|154499759|ref|ZP_02037797.1| hypothetical protein BACCAP_03416 [Bacteroides capillosus ATCC 29799] gi|150271357|gb|EDM98614.1| hypothetical protein BACCAP_03416 [Bacteroides capillosus ATCC 29799] Length = 223 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 14/172 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G ++ IRA S +P+I ++ + L+ G D + KP + +LA++A++ Sbjct: 58 GSNGFDICSQIRAFSDLPIIFVTSSNTDMDELNSIMLGGDAFITKPYNTAILLAKIASLL 117 Query: 117 RRLKVSNNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R+ + A+T I V++ E G+ L + E +IL YL N GK ++ Sbjct: 118 RKRTAA---AQTSEILVWNSATLHLESGTIEYGGQKLELTKNESKILYYLFKNAGKICSR 174 Query: 171 TQIFSAIYGLFDEA--VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I L+D V++N + +I+++R+KL D + +K GY I Sbjct: 175 NDIVDF---LWDNQLYVDDNALSVNITRIREKLAGIGLTDFIKTKHRQGYMI 223 >gi|153829425|ref|ZP_01982092.1| transcriptional regulator [Vibrio cholerae 623-39] gi|148875079|gb|EDL73214.1| transcriptional regulator [Vibrio cholerae 623-39] Length = 224 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 18/170 (10%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L L + IRA +QV ++ +S ++ + +G DD + KP H E+LAR+ A+ RR Sbjct: 60 LALCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRN 119 Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 L+ ++ +RV+ + E L +E ILE + G ++ Sbjct: 120 IQTHTCNKLRFADLELCLSTMRVYRAEQPIE-------LTAKEISILELFLRKPGHIFSR 172 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +I + ++G+ + + NVV+ ++ +LRKK+ + +KR +GY + Sbjct: 173 ERILANVWGIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221 >gi|160900345|ref|YP_001565927.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160365929|gb|ABX37542.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 231 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 10/152 (6%) Query: 57 GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G L L R RA S+ VP++ ++ + D+G DD + KP +E+LAR+ Sbjct: 60 GASGLSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 119 Query: 114 AIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A+ RR ++ G + + + QG++ + E ++L YLM + + ++ Sbjct: 120 AVLRRRAPEQIQDKVNIGELVLDAAAHRVSWQGDMIKVGPTEFKLLHYLMKHPERVHSRA 179 Query: 172 QIFSAIYG--LFDEAVEENVVESHISKLRKKL 201 Q+ ++G +F +EE V+ H+ +LR+ L Sbjct: 180 QLLDKVWGDHVF---IEERTVDVHVKRLREAL 208 >gi|17988267|ref|NP_540901.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella melitensis bv. 1 str. 16M] gi|237816486|ref|ZP_04595479.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella abortus str. 2308 A] gi|17984036|gb|AAL53165.1| phosphate regulon transcriptional regulatory protein phob [Brucella melitensis bv. 1 str. 16M] gi|237788553|gb|EEP62768.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella abortus str. 2308 A] Length = 255 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 20/171 (11%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + G DD V KP E+LARV A+ R Sbjct: 91 IELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 150 Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R LKV + + RV+ ++ EV L E R+LEY M + G+ Sbjct: 151 RANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSPGRVF 203 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +++Q+ ++G D V++ V+ H+ +LRK + D + + R GYS Sbjct: 204 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKAINVGRAADSIRTVRGAGYS 253 >gi|73662382|ref|YP_301163.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494897|dbj|BAE18218.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 236 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 11/141 (7%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---------GPIRVFSDGRDPE 141 + G DD + KP RE++ARV AI RR + N G IR+ + + Sbjct: 93 LELGADDYMTKPFSPREVVARVKAILRRSAIVNEAVPVENDEDDILIGSIRIRPEYFEVY 152 Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + E+ L +E +L YL+ +G+ + + + ++++ ++ A + +V+ HIS LR KL Sbjct: 153 REDELLELTPKEFELLLYLIERQGRVITREHMLNSVWN-YEFAGDSRIVDVHISHLRDKL 211 Query: 202 -RNKLGFDPVDSKRFLGYSID 221 N + + R LGY ++ Sbjct: 212 EENPKQPKLIKTVRGLGYKLE 232 >gi|332359136|gb|EGJ36957.1| DNA-binding response regulator [Streptococcus sanguinis SK49] Length = 234 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD + KP +E+LAR+ ++ RR+ + N + G + G + L Sbjct: 92 LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202 +E +++E+LM N K ++ +IF ++ DE ++E V +IS LR+KL+ Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWSKDEDEDLDEGFVWIYISYLRQKLK 204 >gi|330468634|ref|YP_004406377.1| two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811605|gb|AEB45777.1| two component transcriptional regulator [Verrucosispora maris AB-18-032] Length = 247 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 89/188 (47%), Gaps = 18/188 (9%) Query: 31 SLEFEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAH-SQVPLIGI 78 +L +E W +A + + AI A + + V+ E+ R +R + VP++ + Sbjct: 39 ALRYEGWQVRTAGDGMGAIRAARQFQPDAVVLDVMLPDLDGFEVLRKLREDDATVPVLFL 98 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-----TGPIRV 133 + +++ + G DD V KP E++AR+ A+ RR + + G + + Sbjct: 99 TARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRRSGFAVTARQDAVLTVGDLTL 158 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 + + G++ L E +L YLM N + ++K QI ++ +D + NVVE + Sbjct: 159 NEESHEVRRSGQLITLTATEFELLRYLMRNPRRVLSKAQILDRVWN-YDFGGQANVVELY 217 Query: 194 ISKLRKKL 201 IS LRKK+ Sbjct: 218 ISYLRKKI 225 >gi|324991294|gb|EGC23227.1| DNA-binding response regulator [Streptococcus sanguinis SK353] Length = 234 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD + KP +E+LAR+ ++ RR+ + N + G + G + L Sbjct: 92 LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202 +E +++E+LM N K ++ +IF ++ DE ++E V +IS LR+KL+ Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWSKDEDEDLDEGFVWIYISYLRQKLK 204 >gi|317404897|gb|EFV85265.1| two-component system [Achromobacter xylosoxidans C54] Length = 233 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 19/182 (10%) Query: 48 AIEAF-----------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 A+EAF L+ G L++ R +RA S P++ ++ + +SG D Sbjct: 37 AVEAFRRHDPAITILDLMLPGRDGLQVCRDLRAFSSAPILMLTAREDDLDQILGLESGAD 96 Query: 97 DVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRE 153 D V KP+ R +LAR+ A+ RR L+ R E GP+ + R G L E Sbjct: 97 DYVIKPVEPRVLLARIRALLRRHSQLEEPPERLEFGPLVIDRRTRAVVHGGVEVDLTTME 156 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +L L + G+ + + + +A+ G +E N ++ + KLR KL DP D Sbjct: 157 FEMLWALASQAGQVLTRDDLLNAVRG-----IEFNGLDRSVDVCVSKLRRKLDDDPRDPA 211 Query: 214 RF 215 R Sbjct: 212 RI 213 >gi|312134119|ref|YP_004001457.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311774170|gb|ADQ03657.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 230 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 85/163 (52%), Gaps = 8/163 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125 +R S VP+I I+ + + G DD + KP RE++ARV A RR +S+ + Sbjct: 69 VREFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARVRANLRRTALSSVQD 128 Query: 126 ---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + G + + + + + G+V L RE +L++LM+ +G+ ++ ++ ++G ++ Sbjct: 129 GKVLKAGALTLNPETFEVKKNGKVVELTVREYELLKFLMSQKGQVFSREELLEKVWG-YE 187 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223 + V+ + +LR+K+ + +P + +KR +GY + N Sbjct: 188 YYGDVRTVDVTVRRLREKIEDNPS-EPTFILTKRGIGYYFNPN 229 >gi|294011066|ref|YP_003544526.1| two-component system response regulator CreB [Sphingobium japonicum UT26S] gi|292674396|dbj|BAI95914.1| two-component system response regulator CreB [Sphingobium japonicum UT26S] Length = 235 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 22/174 (12%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LEL R +R S +P+I ++ G DD ++KP R ++AR+ AI RR + Sbjct: 62 LELLRRLREKSHMPVIFLTSKADELDEALGLAMGADDYISKPFSQRLLIARIRAILRRAE 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRER---------------RILEYLMANRG 165 VS +A+ P + +P V+G + P R R ILE L G Sbjct: 122 VS--KADAAPDEPVA---EPIVRGRLEMDPARHRVKWMGLDVTLTVTEFLILETLATRPG 176 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 + Q+ A Y D V++ ++SHI +LR+K R F+ +D+ GY Sbjct: 177 VVKNRNQLMDAAYQ-DDVYVDDRTIDSHIKRLRRKFREVDPEFNAIDTLYGAGY 229 >gi|228943430|ref|ZP_04105874.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976315|ref|ZP_04136786.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783419|gb|EEM31527.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816210|gb|EEM62391.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 233 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 3/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRA 126 RA+ +PL+ ++ + F+ G DD + KP E+ RV A+ +R K+ S Sbjct: 78 RANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYKIGSTQTI 137 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + E LP +E +L L G+ + Q+ I+G+ D A + Sbjct: 138 HLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWGI-DYAGD 196 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V+ HI +LR++ F +++ R LGY ++ Sbjct: 197 DRTVDVHIKRLRERFATTPDFR-IETVRGLGYRLE 230 >gi|229029684|ref|ZP_04185759.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228731626|gb|EEL82533.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 218 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ ++ + F G DD + KP E++ RV A+ +R +++ +++ Sbjct: 61 LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 120 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + V + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 121 IQVGDVLLNRKTFEVSVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 179 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + + + + R LGY ++ Sbjct: 180 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 215 >gi|229044254|ref|ZP_04191927.1| Sensor histidine kinase [Bacillus cereus AH676] gi|228725079|gb|EEL76363.1| Sensor histidine kinase [Bacillus cereus AH676] Length = 231 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 94/207 (45%), Gaps = 13/207 (6%) Query: 27 EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+N + + +E LQ + +V + ++ LE+ + +R ++ VP++ +S Sbjct: 25 EGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKLNGLEVCQEVRENNTVPILMLSAKAE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAETGPIRVFS----- 135 + +G DD + KP + E++ARV A+ RR N + E G IR+ S Sbjct: 85 DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSQKNEDGIIRIRSVEIHK 144 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 +V GE L E IL L +N G+ + +IF ++ D V HIS Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203 Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221 LR KL + G + + +GY I+ Sbjct: 204 NLRDKLETVINGEKFIHTVWGVGYKIE 230 >gi|229062134|ref|ZP_04199458.1| Two-component response regulator [Bacillus cereus AH603] gi|228717117|gb|EEL68793.1| Two-component response regulator [Bacillus cereus AH603] Length = 235 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++ + +F E +G+ L + E +LE LM + + ++ A Sbjct: 125 LAAESDCLGVNGLLLFPSQHTVEWKGQQTELTKNEFYLLECLMKQANQYATREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225 >gi|227834015|ref|YP_002835722.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262183498|ref|ZP_06042919.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227455031|gb|ACP33784.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 234 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 9/151 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP--- 130 P++ ++ S+ + G DD V KP E++ R+ I RR +++ + Sbjct: 80 PVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGNAVDDQDGSATMTY 139 Query: 131 --IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 + + D + GE+ L E +L YLM NR ++K++I ++ +D + N Sbjct: 140 ADLTLNDDTHEVTKAGEIVELSPTEFNLLRYLMQNREVVLSKSKILDNVWH-YDFGGDGN 198 Query: 189 VVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VVES+IS LR+K+ G P + + R +GY Sbjct: 199 VVESYISYLRRKIDT--GDTPLIHTVRGVGY 227 >gi|226310528|ref|YP_002770422.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093476|dbj|BAH41918.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 238 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 17/172 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 EL +R ++ P+ ++ + L F G DD + KP H E++AR+ A RR Sbjct: 65 FELCGAVRQRTKAPIFFLTAKGTDFDKLSGFAYGADDYITKPFHPLEVVARMKAHLRRTL 124 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R + G +V + + V GE P + +L + + K QI+ Sbjct: 125 GGSAPSQEEKRYDFGRFQVNVEAAELFVNGERVDCPAQVFSLLVFFCQYPNRVFTKEQIY 184 Query: 175 SAI----YGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 + YG+FD EN V HI KLR+++ G P + + R LGY + Sbjct: 185 DHVWKDEYGMFD----ENTVMVHIHKLRQRIEENPG-QPKLLVTVRGLGYKL 231 >gi|169829969|ref|YP_001700127.1| response regulator [Lysinibacillus sphaericus C3-41] gi|168994457|gb|ACA41997.1| Response regulator [Lysinibacillus sphaericus C3-41] Length = 225 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 2/131 (1%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 DSG DD + KP E+LAR+ A+ RR KV + +++ D R L Sbjct: 91 LDSGADDYLVKPFKMEELLARIRAVLRRKEKVIEQVIQVENLQLNIDSRVFLRDNTEIEL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 + E +LE+L N+G + + QI I+G +D V N +++ + +RKK+ Sbjct: 151 TKNEFALLEFLFINKGHVLTREQICIYIWG-YDFDVSNNSLDALVKLVRKKIDTSHEKSH 209 Query: 210 VDSKRFLGYSI 220 + + R +GY + Sbjct: 210 IQNVRGIGYKL 220 >gi|92113188|ref|YP_573116.1| two component transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91796278|gb|ABE58417.1| two component transcriptional regulator, winged helix family [Chromohalobacter salexigens DSM 3043] Length = 230 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 5/116 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAETGPIRVFSDGRDPEVQGEV 146 ++G DD ++KP+ E+ AR+ A+ RRL K E G +++ + GE Sbjct: 92 LEAGADDFLHKPLRVTELRARIEALGRRLGYVDKDGTTLLECGLLQLDLAAGYIRLNGET 151 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 L RE R+ + N G+ ++ + I+G+ A+ V++HIS LR+KL+ Sbjct: 152 VELTDREYRLAALFLQNPGQLFTRSYLLERIWGV-SGALNTRTVDTHISGLRRKLK 206 >gi|59712003|ref|YP_204779.1| DNA-binding response regulator [Vibrio fischeri ES114] gi|59480104|gb|AAW85891.1| DNA-binding response regulator [Vibrio fischeri ES114] Length = 218 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 24/207 (11%) Query: 31 SLEFEEWLQSSAREDVSAIEAFLIGKGEKV---LELPRI--------IRAHS-QVPLIGI 78 +LE +W+ +++ V A+ + + + L LP++ IR + P+I + Sbjct: 19 TLESADWVPELSQDGVDALYRATTEEWDAIVLDLGLPKLNGLTVLKSIRDENINTPVIIL 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS-DG 137 S +L ++ ++G DD + KP E++AR+ A RR S N + I S D Sbjct: 79 SARDTLSQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPILKIGDLSLDT 136 Query: 138 RDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHI 194 R +V Q + L E +++ Y M N K +++T + IY FD + N VE I Sbjct: 137 RSSKVLWQDQAVSLTALEYKVVAYFMHNPDKVISRTTLVEHIYKQDFDR--DSNTVEVFI 194 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++RKK+ + + + R LGY ++ Sbjct: 195 GRIRKKIAPNI----IKTVRGLGYQLN 217 >gi|22536790|ref|NP_687641.1| DNA-binding response regulator VncR [Streptococcus agalactiae 2603V/R] gi|25010662|ref|NP_735057.1| hypothetical protein gbs0597 [Streptococcus agalactiae NEM316] gi|76788680|ref|YP_329329.1| DNA-binding response regulator VncR [Streptococcus agalactiae A909] gi|76799863|ref|ZP_00781893.1| response regulator [Streptococcus agalactiae 18RS21] gi|77406749|ref|ZP_00783785.1| DNA-binding response regulator VncR [Streptococcus agalactiae H36B] gi|77408530|ref|ZP_00785267.1| DNA-binding response regulator VncR [Streptococcus agalactiae COH1] gi|77411096|ref|ZP_00787449.1| DNA-binding response regulator VncR [Streptococcus agalactiae CJB111] gi|77414291|ref|ZP_00790450.1| DNA-binding response regulator VncR [Streptococcus agalactiae 515] gi|22533635|gb|AAM99513.1|AE014219_5 DNA-binding response regulator VncR [Streptococcus agalactiae 2603V/R] gi|23095016|emb|CAD46241.1| Unknown [Streptococcus agalactiae NEM316] gi|76563737|gb|ABA46321.1| DNA-binding response regulator VncR [Streptococcus agalactiae A909] gi|76584783|gb|EAO61511.1| response regulator [Streptococcus agalactiae 18RS21] gi|77159670|gb|EAO70822.1| DNA-binding response regulator VncR [Streptococcus agalactiae 515] gi|77162819|gb|EAO73777.1| DNA-binding response regulator VncR [Streptococcus agalactiae CJB111] gi|77172887|gb|EAO76019.1| DNA-binding response regulator VncR [Streptococcus agalactiae COH1] gi|77174626|gb|EAO77459.1| DNA-binding response regulator VncR [Streptococcus agalactiae H36B] Length = 217 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 81/161 (50%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S +P++ ++ + + +D F + VD V KP + AR+ ++ ++ Sbjct: 59 LEVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNF 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E + V + ++ E + +E IL+ L+ N G+ + + QI ++ Sbjct: 119 GHLEKFEYKNLSVNFNSYTAKINDEKIDVNAKELEILKCLLDNDGQVLTRMQIIDYVWKD 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + VV+ +I +LRKKL+ D + + R +GY ++ Sbjct: 179 SEEIPYDRVVDVYIKELRKKLQ----LDCITTIRNVGYKLE 215 >gi|330940225|gb|EGH43362.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 227 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 6/152 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETG 129 P++ IS + + +G DD + KP E+ ARV + RR + + + Sbjct: 74 TPILMISALSDVDERVRGLRAGGDDYLPKPFASDEMAARVEVLLRRSNPVSAAKTVLQVA 133 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 + + R+ GE L E ++LE+LM N G+ + + IF ++G FD N Sbjct: 134 DLELNLITREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVWGYHFDPGT--N 191 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ HI +LRKK+ + + R GY I Sbjct: 192 LIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223 >gi|307947387|ref|ZP_07662721.1| transcriptional regulatory protein OmpR [Roseibium sp. TrichSKD4] gi|307769529|gb|EFO28756.1| transcriptional regulatory protein OmpR [Roseibium sp. TrichSKD4] Length = 242 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 101/212 (47%), Gaps = 20/212 (9%) Query: 4 LIDDRALVKDGYIALFGD---DGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++DD ++D AL + D V +E + ++ S + D+ I+ L + E Sbjct: 8 IVDDEIGMRDALSALLTENEFDPVPMECISDFNV---VRKSVKLDLVIIDLQL--RNESG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LEL + IR +P++ ++ + ++G DD + KP + RE++AR+ A+ RR + Sbjct: 63 LELAKAIRKTEDLPIVMLTGQGDETDQIVGLETGADDYLLKPFNPRELVARIKAVLRRYQ 122 Query: 121 VSNNRA-----ETGPI---RVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVA 169 + + A G I R+ D +D + GE L E R+LEY +A K ++ Sbjct: 123 PNQHNAVSADDTAGRISFGRMMVDQQDRALYGPDGEEIVLTNAEFRLLEYFLARPNKVIS 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + + + + + V+ V+ I +LR+K+ Sbjct: 183 RLDLLTELGSDLTKYVDRT-VDVLILRLRRKI 213 >gi|251773087|gb|EES53641.1| two component transcriptional regulator, winged helix family [Leptospirillum ferrodiazotrophum] Length = 232 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 12/204 (5%) Query: 24 VSLEGFNSLEFEEW---LQSSAREDVSAIEAFLIGKGEKVLELPRIIR---AHSQVPLIG 77 + +EGF + L + R AI L+ G L + R+I+ A S P++ Sbjct: 22 LKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDGLTVNRLIKQDPAISATPVVI 81 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---NNRAETGPIRVF 134 ++ + + G DD + KP H +E++ARV A+ RR + R GP+ + Sbjct: 82 VTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLRRRETQQRLTERMSIGPVTID 141 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 + +G PL +E +L LM G+ + + + + ++G D + V+ HI Sbjct: 142 IGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDRETLLNTVWG-DDYEGTDRTVDVHI 200 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGY 218 +LRKK+ + V++ + +GY Sbjct: 201 RRLRKKMGESAAW--VETVKQIGY 222 >gi|229019664|ref|ZP_04176472.1| Two-component response regulator [Bacillus cereus AH1273] gi|229025901|ref|ZP_04182296.1| Two-component response regulator [Bacillus cereus AH1272] gi|228735404|gb|EEL86004.1| Two-component response regulator [Bacillus cereus AH1272] gi|228741627|gb|EEL91819.1| Two-component response regulator [Bacillus cereus AH1273] Length = 237 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR+ S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 67 RQIRSVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 126 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 127 SVAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 184 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 185 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 227 >gi|210622831|ref|ZP_03293375.1| hypothetical protein CLOHIR_01323 [Clostridium hiranonis DSM 13275] gi|210154048|gb|EEA85054.1| hypothetical protein CLOHIR_01323 [Clostridium hiranonis DSM 13275] Length = 228 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 104/232 (44%), Gaps = 19/232 (8%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 +F + DD +L+ AL G ++ +++ E L + + D++ ++ L G G + Sbjct: 4 IFFVEDDLSLISGLSFAL-KKQGYEVDNARTIDEAEKLWQNNKYDLAILDISLPDGSGYQ 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 + E IR +S++P+I ++ + D G DD + KP L++V AI RR Sbjct: 63 LCEK---IRLNSKIPIIFLTAADEETDIIMGLDMGADDYITKPFKLAVFLSKVNAILRRS 119 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + I V D GE L E ++L M N +++ QI Sbjct: 120 NDFNQKNTVLNSNGISVNLLNGDVTKNGETLNLTSGEYKLLCLFMENPNIILSQEQILGK 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-----SKRFLGYSIDWN 223 ++ ++ ++ + + +I +LRKK+ + DP + + R +GY WN Sbjct: 180 LWDSNNDFIDNSTLTVYIRRLRKKVED----DPSNPTNIVTVRRMGYK--WN 225 >gi|207724572|ref|YP_002254969.1| response regulator protein [Ralstonia solanacearum MolK2] gi|206589794|emb|CAQ36755.1| response regulator protein [Ralstonia solanacearum MolK2] Length = 245 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 5/115 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEV 146 F++GVDD++ E+ ARV + RR + A GP R+ R V Sbjct: 92 FEAGVDDLLTGHFTAEELRARVQRVLRRSEQPRQNASMHVVVGPYRLCRLTRTATVNETP 151 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L RE L ++ G +++ QI SA++G D ++ E +E HI KLRKKL Sbjct: 152 IRLTAREFATAWLLFSSPGTFLSRQQIASAVWGA-DASIVERSIEQHIYKLRKKL 205 >gi|167751102|ref|ZP_02423229.1| hypothetical protein EUBSIR_02087 [Eubacterium siraeum DSM 15702] gi|167656020|gb|EDS00150.1| hypothetical protein EUBSIR_02087 [Eubacterium siraeum DSM 15702] Length = 223 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125 IR S+VP+I +S + + G DD + KP + A++ A+ RR S N Sbjct: 67 IRKLSKVPVIFLSSASDNMNVVMAMNMGGDDFIAKPFDLSVLTAKINAVLRRAYSFSGNS 126 Query: 126 AETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 V D V + L + E RIL LM N G+ +++ + ++ D Sbjct: 127 DLISHGSVILDISSAVVTNGDKKIELTKNELRILRTLMENAGRIISRDTLMQRLWET-DC 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+EN + ++S+LRKKL N + + +K +GY I Sbjct: 186 FVDENTLTVNVSRLRKKLENIGLENYITTKVGMGYMI 222 >gi|153853751|ref|ZP_01995107.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814] gi|149753501|gb|EDM63432.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814] Length = 240 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 10/145 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SN 123 +R S++P+I +S + G DD + KP + E++ARV A RR + Sbjct: 69 LREKSRIPVIILSAKTEESDKVSGLTLGADDYIEKPYNPAELIARVKAHLRRYRAWSGGE 128 Query: 124 NRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + P ++ + G R V+GE L E +ILE LMA+ G+ QI+ Sbjct: 129 TEKKKDPDQIVNGGLVLDKKQRVIFVEGEEVHLTATEYKILELLMAHPGQVFPAEQIYEN 188 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++ + EN V HI +R+K+ Sbjct: 189 VWQETADYTVENTVMVHIRHIREKV 213 >gi|120556501|ref|YP_960852.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120326350|gb|ABM20665.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 230 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 14/157 (8%) Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ A + +P+I ++ + + G DD + KP RE++AR+ Sbjct: 59 GTSGVELARRLKKEEATADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP------EVQGEVFPLPRRERRILEYLMANRGKR 167 A+ RR + PI V DP V G + P E R+L++ M ++ + Sbjct: 119 AVLRR---ATPPGVDSPIEVDGLTLDPIGHRVTTVDGAINMGP-TEYRLLQFFMTHQERV 174 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 ++Q+ ++G + VEE V+ HI +LRK L ++ Sbjct: 175 YTRSQLLDQVWG-GNVYVEERTVDVHIRRLRKALGDR 210 >gi|150389766|ref|YP_001319815.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949628|gb|ABR48156.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 225 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 3/133 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDPEVQGEVFP 148 DSG DD + KP E+LAR+ AI RR + + + G +++ + + Sbjct: 91 LDSGADDYLAKPFATEELLARIRAISRRKGEVILDGTLKYGDVQLNPSTLKLSKESKEVK 150 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L +E +L +L+ +K I I+G FD VE N VE +IS LRKKL Sbjct: 151 LTLKESDLLAFLILRNNLASSKELIIEKIWG-FDSDVEHNHVEVYISFLRKKLLFLTSKV 209 Query: 209 PVDSKRFLGYSID 221 +++ R +GY ++ Sbjct: 210 VINTLRGVGYILE 222 >gi|77406220|ref|ZP_00783289.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77175170|gb|EAO77970.1| DNA-binding response regulator [Streptococcus agalactiae H36B] Length = 223 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/210 (23%), Positives = 104/210 (49%), Gaps = 13/210 (6%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L ++GY + +G E N L+ EE + ++ I ++ + + EL A Sbjct: 21 LTQEGYQFITASNGQ--EALNCLDTEE-----VQLIITDIMMPMMDGYQLIQELRS---A 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAET 128 VP+I ++ ++ F G DD + KP+ +E+ R+ A+ RR V+ ++ Sbjct: 71 AYNVPIIVMTAKSQMEDMTKGFGLGXDDYMVKPVQLQELALRIKALLRRANIVAQHQLII 130 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + D + + P++E R+L +L++ + + ++ +I+G+ D ++E Sbjct: 131 GNTCLNEDELSLKYFEQEIVFPQKEFRVLFHLLSYPNRIFTRLELLDSIWGM-DTDLDER 189 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 VV++ I+K+R+K+ + F +++ R +GY Sbjct: 190 VVDACINKIRRKVEHLPDF-KIETVRGVGY 218 >gi|319406352|emb|CBI79991.1| two-component response regulator [Bartonella sp. AR 15-3] Length = 227 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 9/145 (6%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130 + P+I I++ + T+ F GV+D V KP +LAR+ A R+ K + N GP Sbjct: 76 RAPIIMITNCDTDCDTILGFKIGVNDYVIKPFRFLVLLARIRAQLRQYKYNENAIFYIGP 135 Query: 131 IRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 +F + Q + L +E IL+YL NR K V + + I+G ++ + + Sbjct: 136 Y-IFKPREKFLIDKQNDKIYLTEKETAILQYLYDNRNKIVNRETLLEHIWG-YNTGIITH 193 Query: 189 VVESHISKLRKKLRNKLGFDPVDSK 213 +E+HI +LRKK+ DP +K Sbjct: 194 TLETHIYRLRKKIEK----DPSKAK 214 >gi|304394459|ref|ZP_07376380.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia sp. R2A130] gi|303293369|gb|EFL87748.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia sp. R2A130] Length = 233 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 74/157 (47%), Gaps = 11/157 (7%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 Q+P+I ++ + D+G DD + KP E+LARV A RR N AE G + Sbjct: 80 QIPIIMLTARGEEGDKVRALDTGADDYIVKPYSVAELLARVRAHIRR----ANPAEVGEM 135 Query: 132 RVFSDGR-DP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 D + DP E G L E R+L ++ G+ + + ++ D + Sbjct: 136 LEHGDIKLDPSRMKVERSGTGIKLGPTEFRLLTVFLSRPGRVWTRESLLERVWE-HDLDI 194 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ V+ H+ +LR+ L+ DP+ + R GYS+D+ Sbjct: 195 DQRTVDVHVGRLRRALKVNGLADPIRTIRSAGYSLDF 231 >gi|228985707|ref|ZP_04145860.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774102|gb|EEM22515.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 231 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/167 (22%), Positives = 83/167 (49%), Gaps = 9/167 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IR S P++ IS + ++G DD ++KP H+ ++A++ + RR Sbjct: 61 RQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDYA 120 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K+ E + ++ + +++ + + R E +LE LM N + V++ + + ++ Sbjct: 121 PKIEERMVEQHGLCLYPERLVLKLKNQEIDVTRNEAILLEMLMKNYPRVVSREVLLNKLW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223 + V++N + + +++RKKL+ D +++ R +GY I W+ Sbjct: 181 D-SESYVDDNTLSVNTTRVRKKLKTLHIEDAIETIRSVGYRLHITWD 226 >gi|239629145|ref|ZP_04672176.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239519291|gb|EEQ59157.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 229 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 4/144 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117 LE+ + +RA+S VP+I IS ++ + D G DD + KP E+LAR+ R Sbjct: 64 LEIIQEVRAYSSVPIIVISARTMERSKVAALDMGADDYLTKPFGTAELLARIRTALRHSQ 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R N++ + G + + + R +V + L + E +++ L N G+ + I S I Sbjct: 124 RNVSENSKYDVGGLLIDFERRLVKVNDQEVHLTQIEYKLVSLLAQNAGRVLTYETIISKI 183 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 +G F ++ + ++ +++ +R+KL Sbjct: 184 WGPFADS-DNQILRVNMAHIRRKL 206 >gi|213970103|ref|ZP_03398235.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato T1] gi|301381459|ref|ZP_07229877.1| DNA-binding heavy metal response regulator, putative [Pseudomonas syringae pv. tomato Max13] gi|302061114|ref|ZP_07252655.1| DNA-binding heavy metal response regulator, putative [Pseudomonas syringae pv. tomato K40] gi|213925207|gb|EEB58770.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato T1] Length = 227 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 7/159 (4%) Query: 67 IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVS 122 +RA P++ IS + + G DD + KP E+ ARV + RR + + Sbjct: 67 LRAQGISTPILMISALSDVDERVRGLRGGGDDYLPKPFASDEMAARVEVLLRRSNPVSAA 126 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181 + + + R+ GE L E ++LE+LM N G+ + + IF ++G F Sbjct: 127 KTVLQVADLELNLISREACRGGEPLILLPTEFKLLEFLMRNSGQIITRMMIFQEVWGYHF 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D N+++ HI +LRKK+ + + R GY I Sbjct: 187 DPGT--NLIDVHIGRLRKKIDQPGTAQLIQTVRGSGYVI 223 >gi|172035886|ref|YP_001802387.1| two-component transcription regulator [Cyanothece sp. ATCC 51142] gi|171697340|gb|ACB50321.1| two-component transcription regulator [Cyanothece sp. ATCC 51142] Length = 225 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 5/159 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI ++ +P++ ++ + + + D G DD V KP E+LAR+ A+ RR V+ N Sbjct: 66 RIRQSGYTIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDVPELLARIRALLRRGNVAPN 125 Query: 125 R-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E +R+ + ++ L +E +LE + N ++++ I ++ F++ Sbjct: 126 PILEWQQLRLDPSNYEVTYSDKLLHLTPKEYGLLELFLRNENIVLSRSAILDNLWS-FED 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 E V+ HI LRKKLR K+G P +++ +GY + Sbjct: 185 PPSEEAVKVHIKDLRKKLR-KVGAPPDFIETVYGVGYRL 222 >gi|169824609|ref|YP_001692220.1| two-component DNA-binding response regulator [Finegoldia magna ATCC 29328] gi|167831414|dbj|BAG08330.1| two-component DNA-binding response regulator [Finegoldia magna ATCC 29328] Length = 218 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/161 (22%), Positives = 78/161 (48%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + IR S +P I ++ + + ++ F S D + KP + R+ ++ ++ Sbjct: 60 LDVLKKIRETSDIPAIMLTAFSDEEYKINAFTSLADGYIEKPFSLPVLKVRIESLIKKHY 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N V ++ G+ + +E IL+Y++ N G+ + + QI +++ Sbjct: 120 GNNETFNYKNTEVNFASYTAKLNGKKVDVNAKELEILKYMIENEGQALTRMQIIDSVWKE 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 180 TDEIPFDRVIDVYIKELRKKLE----LDCIVTIRNVGYKLE 216 >gi|59711133|ref|YP_203909.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Vibrio fischeri ES114] gi|59479234|gb|AAW85021.1| DNA-binding response regulator in two-component regulatory system with PhoQ [Vibrio fischeri ES114] Length = 226 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 2/140 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-V 121 + +I R P++ ++ + Q ++ ++G DD + KP E++AR+ A+ RR Sbjct: 64 IKQIRRKEIHSPILILTARGNWQDKVEGLEAGADDYLVKPFQSEELIARLYALARRAAGF 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + ++ I + + V G+ L E I YL+ N K ++K Q A+Y Sbjct: 124 TQSKVTAENIELDIKAKTIHVDGQFLQLTSFEYDIAAYLIKNSLKIISKQQFVDALYQE- 182 Query: 182 DEAVEENVVESHISKLRKKL 201 D V+ N +E IS+LRKK Sbjct: 183 DSEVQLNNIEVIISRLRKKF 202 >gi|83646343|ref|YP_434778.1| response regulator [Hahella chejuensis KCTC 2396] gi|83634386|gb|ABC30353.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 228 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 77/156 (49%), Gaps = 5/156 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRA 126 A + P++ ++ S+ + +SG DD + KP E+LARV I RR + +S N+ Sbjct: 69 AGNATPVLFLTARDSVSDRVQGLESGADDYLVKPFAFSELLARVRNILRRGLVPLSGNQL 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 G + + R G L +E +LE + +G+ + ++ I S ++ + FD Sbjct: 129 SVGDLTLDISRRSARRGGSEIQLTTKEFTLLELFVRRQGEVLPRSLIASQVWDMNFDS-- 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NV++ + +LR K+ + + + R +GY +D Sbjct: 187 DTNVIDVAVRRLRMKVDDGHDIKLIQTVRGMGYRLD 222 >gi|325264508|ref|ZP_08131238.1| transcriptional regulatory protein [Clostridium sp. D5] gi|324030170|gb|EGB91455.1| transcriptional regulatory protein [Clostridium sp. D5] Length = 223 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/202 (24%), Positives = 90/202 (44%), Gaps = 19/202 (9%) Query: 18 LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-------------GEKVLELP 64 LF DD + + N F E ++ + + L+GK G+ EL Sbjct: 5 LFVDDDIDILNLNHAYFTEHGFAADKASSAKDALLLLGKNAYDCVILDIRMDGQDGFELC 64 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLKVSN 123 R +R S +P+I ++ + F SG DD + KP H +E+ R+ A I+ RL S Sbjct: 65 RTLRDISNIPIIFLTVLTDEASLEQGFLSGGDDYIVKPYHMKELELRIRARIHPRLHHSR 124 Query: 124 NRAETGPIRVF--SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G R++ D + + L E +IL++L ++G + +I+ A++G Sbjct: 125 QGDLQGSSRLYICPDEKQAYIGSSSLDLTISEFQILQFLSNHKGIPYRQEEIYEALWG-- 182 Query: 182 DEAVEENVVESHISKLRKKLRN 203 E + ++ I ++R+K++ Sbjct: 183 -ERYNTHSIQVLIMRIRRKIKT 203 >gi|319404867|emb|CBI78468.1| two-component response regulator [Bartonella rochalimae ATCC BAA-1498] Length = 226 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 8/144 (5%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 + P+I ++ + T+ F GV+D V KP +LAR+ A R+ + + + + GP Sbjct: 76 RAPIIMMTHCDTDCDTILGFKMGVNDYVTKPFRFSVLLARIRAQLRQYEHNEDSFDLGPY 135 Query: 132 RVFSDGRD--PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 +F + Q + L +E IL+YL R K V++ + ++G ++ + + Sbjct: 136 -IFKPREKFLIDQQNNIINLTEKETAILKYLYETRDKIVSRETLLEHVWG-YNANIITHT 193 Query: 190 VESHISKLRKKLRNKLGFDPVDSK 213 +E+HI +LRKK+ DP +K Sbjct: 194 LETHIYRLRKKIEK----DPSKAK 213 >gi|300717533|ref|YP_003742336.1| two-component system response regulator [Erwinia billingiae Eb661] gi|299063369|emb|CAX60489.1| Two-component system response regulator [Erwinia billingiae Eb661] Length = 235 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 4/151 (2%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L + R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 59 LMLPGMDGLTVCREIRRFSDLPIMMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARV 118 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAK 170 I +R K + A+ + V + R QG + P E R+L+ L GK ++ Sbjct: 119 KTILKRCKRTPEEAQKASLLVIDENRFQASWDQGPLDLTP-AEFRLLKTLAQEPGKVFSR 177 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + + +Y + V + ++SHI LR+KL Sbjct: 178 EMLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 207 >gi|317047742|ref|YP_004115390.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|316949359|gb|ADU68834.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 222 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/221 (23%), Positives = 101/221 (45%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ + G ++ + ++ D++ ++ L GE + Sbjct: 4 LVVEDNALLRHHLAVQLREMGHQVDAAEDAKEADYFLQEHVPDIALVDLGL--PGEDGMS 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R R + + P++ ++ Q ++ ++G DD V KP H E+ AR+ A+ RR Sbjct: 62 LIRRWRGDAIRQPILVLTAREGWQAKVEALEAGADDYVTKPFHIEEVAARLQALMRRNSG 121 Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ P +V R+ + E L E I+E L+ N GK V+K + +Y Sbjct: 122 HASQIISMSPFQVDLSRRELTINEEQVKLTAFEYTIVETLIRNAGKVVSKDSLMLQLYP- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E + ++ + +LRKK+ + +++ R GY D Sbjct: 181 DAELRESHTIDVLMGRLRKKILALYPTEVINTVRGQGYRFD 221 >gi|197106109|ref|YP_002131486.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] gi|196479529|gb|ACG79057.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] Length = 237 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 4/138 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSN 123 IR S+ P++ +S + D+G DD VNKP+ E+LAR+ A R R S Sbjct: 69 IREWSEAPILVLSARDLESEKIAALDAGADDFVNKPVGVGELLARLRASLRGRERRFASQ 128 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 +G + + R VQGE L RE +L L + G+ V Q+ +A++G + Sbjct: 129 AMFRSGDLAIDFARRRVTVQGEEVRLTPREYDLLRILARHAGRPVTHRQVIAAVWGAGAQ 188 Query: 184 AVEENVVESHISKLRKKL 201 V+ V +++LR+KL Sbjct: 189 -VDAQFVRVLVAQLRQKL 205 >gi|192362017|ref|YP_001981895.1| DNA-binding response regulator CreB [Cellvibrio japonicus Ueda107] gi|190688182|gb|ACE85860.1| two-component response regulator CreB [Cellvibrio japonicus Ueda107] Length = 240 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 10/167 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E + +R S+VP+I ++ S + + G DD V KP RE+ ARV AI +R + Sbjct: 68 EACKQLRRFSEVPVIFLTARGSELDRVVGLEIGADDYVVKPFSPRELAARVKAILKRTRQ 127 Query: 121 ----VSNNRAETGPIRVF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +++ A+ F ++ + ++ L R E +L+ ++ G+ ++ Q+ Sbjct: 128 VGATLASAAADVQDASEFVIDTERKTIHYHQQLLGLTRLEFSLLQAMVMQPGRVFSREQL 187 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 A+ G+ +A + ++ HI LR KLR K G +P+ + R GY+ Sbjct: 188 LDAL-GISTDAGYDRSIDGHIKTLRAKLRALKPGAEPIKTLRGFGYA 233 >gi|161502167|ref|YP_001569279.1| hypothetical protein SARI_00190 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863514|gb|ABX20137.1| hypothetical protein SARI_00190 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 224 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 5/150 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P++ ++ ++ + + G DD + KP E+ AR+ A+ RR + + Sbjct: 73 LPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRSAGQVHEVQRLGEL 132 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 +F D +Q + L RE+ +L LM R + V++ Q+F ++ L DE E+ +E Sbjct: 133 IFHDEGYFLLQEQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFSLNDEVSPES-IEL 191 Query: 193 HISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 +I +LRKKL+ G D + + R LGY ++ Sbjct: 192 YIHRLRKKLQ---GSDVRITTLRGLGYVLE 218 >gi|157377522|ref|YP_001476122.1| two component transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157319896|gb|ABV38994.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 225 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 108/223 (48%), Gaps = 10/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 +L++D A + + F + G ++E + L +S + D+ ++ L G K+L Sbjct: 4 LLVEDDATTIEYVVKGFMEQGHNIETASDGHQGLLLATSMKYDLVILDRMLPQLDGLKLL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--L 119 R SQ P++ +S + + +G DD + KP E+L R + +R Sbjct: 64 AALRA--TGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGFS 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ G + + R + G L +E ++L+YLM + + +++T +F A++ Sbjct: 122 QPADTELSVGNLVMELLTRKVTLDGTELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVWD 181 Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 FD NV++ HI+KLR+K +LGF + +++ R GY + Sbjct: 182 YHFDP--RTNVIDVHIAKLRRKF-EELGFGELIETVRGAGYRL 221 >gi|167033875|ref|YP_001669106.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166860363|gb|ABY98770.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 226 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 5/151 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGP 130 P++ IS + + +G DD + KP E+ ARV + RR + ++ R + Sbjct: 74 TPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSVPMTQTRLQVAD 133 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189 +++ + L E ++LEYLM + G+ + + IF ++G FD N+ Sbjct: 134 LQLDLISHEARRGDNTLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWGYHFDPGT--NL 191 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ HI +LRKK+ + + + R GY+I Sbjct: 192 IDVHIGRLRKKIDSPGQSPLIRTVRGSGYAI 222 >gi|146300797|ref|YP_001195388.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146155215|gb|ABQ06069.1| two component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 224 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 11/198 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG---EK 59 ++I+D + + F D+GV E ++ ++Q+ + D + L+ G Sbjct: 4 LIIEDEQDIAQSIQSYFKDNGVKCETAHN-----YVQAIHKIDNYDYDCILLDLGLPDGD 58 Query: 60 VLELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++ R +R+ + +I IS +L+T L+ F G DD + KP H E+L R+ A+ RR Sbjct: 59 GFDILRELRSKDKTDGVIIISAKETLETRLESFSLGADDYLTKPFHLAELLVRMQALVRR 118 Query: 119 LKV-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +N IR+ + V G+ L R+E +L +L+ N K ++K I + Sbjct: 119 RNFKGSNSVVFQEIRIEVFTKTVLVNGQKLELTRKELNLLLFLIGNNDKVLSKAAIAEHL 178 Query: 178 YG-LFDEAVEENVVESHI 194 G + D + + +HI Sbjct: 179 SGDMADMLDSHDFIYAHI 196 >gi|92118604|ref|YP_578333.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91801498|gb|ABE63873.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 242 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 12/150 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE +L R IRA S VP+I ++ ++ ++ G DD V KP RE++ R+ I Sbjct: 76 GETGFDLARFIRASSSVPIIMLTARHEAESRIEGLQIGADDYVAKPFEPRELVLRIGNIL 135 Query: 117 RRL----KVSNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKT 171 +R V GP V+ R QG +V L RER +L L A G+ V + Sbjct: 136 KRTMPLPAVRTGSIAFGPY-VYHLERGELRQGDDVVHLTDREREMLRVLAATPGETVRRG 194 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ V E V+ I++LR+K+ Sbjct: 195 ELNGG------GTVNERAVDVQINRLRRKI 218 >gi|87119431|ref|ZP_01075328.1| Two component Transcriptional regulator, Winged helix family protein [Marinomonas sp. MED121] gi|86164907|gb|EAQ66175.1| Two component Transcriptional regulator, Winged helix family protein [Marinomonas sp. MED121] Length = 239 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 15/161 (9%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R +R + P++ ++ + + G DD V+KP+ R +LARV ++ RR Sbjct: 70 RSVREGYKAPILMLTARSDDVDQILGLEIGADDYVSKPVKPRVLLARVQSLLRRSIMDVG 129 Query: 120 -KVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N+ E GP+ + + R+ V GE L E +L L +N G+ +++ +IF Sbjct: 130 KQTGGNQGEQNLTFGPLVIDNTRREAWVHGEEIELTSAEFDLLWLLASNAGRILSREEIF 189 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 + G+ + ++ V+ IS ++R+K+G DPV +R Sbjct: 190 GELRGIEYDG-QDRSVDVRIS----RIRSKIGDDPVHPRRI 225 >gi|331090746|ref|ZP_08339593.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399854|gb|EGG79513.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium 2_1_46FAA] Length = 229 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/205 (23%), Positives = 96/205 (46%), Gaps = 9/205 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ + + EE L+ + ++ I ++ E Sbjct: 6 LVVDDEKLIVKGIRFSLEQDGMEVDC--AYDGEEALEKAKAQEYDLILLDIMLPKYTGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + ++IR S VP++ ++ + + G DD + KP + E+ AR+ AI RR S Sbjct: 64 VCQMIREFSDVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTGKS 123 Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 E I + +D R V G+ L +E +LE L N K ++ ++ + Sbjct: 124 VKEKEDKNIILKNDMKIDRQSRRVYVDGKEINLTAKEFDLLELLATNPDKVYSREELLNI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++G ++ + V+ H+ +LR+K+ Sbjct: 184 VWG-YEYPGDARTVDVHVRRLREKV 207 >gi|332654980|ref|ZP_08420722.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332516323|gb|EGJ45931.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 230 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 13/144 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + +P++ + + + +G DD + KP E++AR+A++ RR N++A Sbjct: 67 IRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNHQA 126 Query: 127 ------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179 + +++ + R F LP +E +L Y ++GK + K QI+ ++G Sbjct: 127 GAMQKLDFDGLQIDLENRSVTTANGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVWGE 186 Query: 180 --LFDEAVEENVVESHISKLRKKL 201 +D++ N++ + IS+LRKKL Sbjct: 187 EYFYDDS---NIM-AIISRLRKKL 206 >gi|297571688|ref|YP_003697462.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] gi|296932035|gb|ADH92843.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] Length = 227 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 103/242 (42%), Gaps = 45/242 (18%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF------------LIG 55 RALV D + VS+ F +LE +++ SA SA E L+ Sbjct: 4 RALVVDDEAQM-----VSIVTF-ALETQDFTCESATTPASAWELLQRNHYDLVVLDVLMP 57 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 +G + R+ A P+I ++ + ++G DD V KP RE+ R AI Sbjct: 58 RGSGIDITRRMRAAGIATPVILLTALGQESDRIAGLEAGADDYVTKPFSPRELALRAQAI 117 Query: 116 YRRLKVSNNRAE-----TGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMA 162 RR + +AE GP+RV ++D E Q EV IL L+ Sbjct: 118 VRR---ATPQAEVTDITVGPVRVDLHAGRAWYNDALITESQAEVA--------ILGVLVR 166 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 N VA + +A +G + +V++ + +LRK L G DP V S R LGYS+ Sbjct: 167 NPDAVVATRDLVAAAWGKNVHSGGREMVKTTVYRLRKHL-EAAGIDPGIVRSHRGLGYSL 225 Query: 221 DW 222 D+ Sbjct: 226 DF 227 >gi|255527025|ref|ZP_05393916.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186975|ref|ZP_06855375.1| regulatory protein VanR [Clostridium carboxidivorans P7] gi|255509281|gb|EET85630.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048413|gb|EFG87847.1| regulatory protein VanR [Clostridium carboxidivorans P7] Length = 232 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 11/144 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR H +P+I +S + +G DD + KP + E+LARV + RR NN Sbjct: 69 IREHKNMPIIMLSAKGEDMDKIMGLTTGADDYITKPFNPLELLARVKSQLRRYTKLNNAM 128 Query: 127 --------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + + +V ++ L RRE ILE L NRG + +I+ ++ Sbjct: 129 QNINSDIIEIDDLTINVSTHEVKVGEKLINLTRREFDILELLAKNRGIVFSTEKIYERVW 188 Query: 179 GLFDEAVE-ENVVESHISKLRKKL 201 +E + +N V HI K+R+K+ Sbjct: 189 N--EEFYQSDNTVMVHIRKIREKI 210 >gi|229062220|ref|ZP_04199542.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH603] gi|228717048|gb|EEL68727.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH603] Length = 239 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 21/221 (9%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEK 59 MFV DR + +I L DD E + +E Q + A + + AFL G + Sbjct: 1 MFVKKGDRNM--SHHILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDL 58 Query: 60 V-----------LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108 + LE+ RIIR S VP++ +S + G DD + KP E+ Sbjct: 59 IILDIMMPKLDGLEVVRIIREKSAVPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIEL 118 Query: 109 LARV-AAIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMA 162 ARV A I R K S ++ I++ DP E +G L +E IL+ + Sbjct: 119 AARVKAGIRRSTKYSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVK 178 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 N+ + K QI++ ++ + ++NV+ H+ +LR+K+ + Sbjct: 179 NQNRVFTKAQIYTLVWN-EEYYGDDNVINVHMRRLREKIES 218 >gi|42518151|ref|NP_964081.1| two-component regulatory system response regulator [Lactobacillus johnsonii NCC 533] gi|41582435|gb|AAS08047.1| two-component regulatory system response regulator [Lactobacillus johnsonii NCC 533] gi|329666463|gb|AEB92411.1| two-component system response regulator [Lactobacillus johnsonii DPC 6026] Length = 235 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 10/169 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R +P+I ++ + + + G DD V KP +RE++ARV A RR Sbjct: 62 LEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRD 121 Query: 121 VSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ E G + + + E GE L RE +L YL + G+ + + Sbjct: 122 LTQKATEDDEDKNITIGNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGYYV 229 >gi|330900238|gb|EGH31657.1| heavy metal response regulator [Pseudomonas syringae pv. japonica str. M301072PT] Length = 228 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 81/162 (50%), Gaps = 8/162 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR----LK 120 R+ A VP++ ++ + + + G DD + KP E+LARV + RR L+ Sbjct: 65 RLRTAGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGSSSLQ 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V + + G ++V R G+ L +E +LE LM +G+ ++K+ I S ++ + Sbjct: 125 VQTS-LQIGDLQVDLLKRRATRGGKRIELTAKEFALLELLMRRQGEVLSKSLIASQVWDM 183 Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + NV+E I +LR K+ + + + R +GY ++ Sbjct: 184 NFDS--DTNVIEVAIRRLRAKIDDDFEVKLLHTCRGMGYMLE 223 >gi|324329030|gb|ADY24290.1| two-component response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 225 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 7/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++D S + + +G DD + KP E++ARV AI RR Sbjct: 62 EICRQIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 120 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + ET + +F D V+ G+ L +RE +L +L+ N+ +++ + + Sbjct: 121 CNQQHETTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + V NVV+ +I +RKKL+ + + + GYS+ Sbjct: 181 VWG-HNVVVNPNVVDLYIGYVRKKLKCEKKDRYIQTIHGRGYSM 223 >gi|315640403|ref|ZP_07895515.1| response regulator [Enterococcus italicus DSM 15952] gi|315483841|gb|EFU74325.1| response regulator [Enterococcus italicus DSM 15952] Length = 229 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 10/169 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +++ +I+R SQ+P+I ++ + + +G DD V KP + E++ARV ++ RR Sbjct: 61 MQVVKILRKESQLPIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRST 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPE----VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173 ++V+ ++ + + RD + G+ L E IL YL+A+ RV + +I Sbjct: 121 MQVTADQPDVLEVSSLIINRDSHEVKTLDGKDIQLTALEFGIL-YLLASHPNRVFSADEI 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-LGYSID 221 F ++ + V V H+S LR K+ G + + + +GY ID Sbjct: 180 FERVWKQ-ESVVSAKTVMVHVSHLRDKIEEATGGEKIIQTVWGVGYKID 227 >gi|304313008|ref|YP_003812606.1| Two-component response regulator receiver [gamma proteobacterium HdN1] gi|301798741|emb|CBL46974.1| Two-component response regulator receiver [gamma proteobacterium HdN1] Length = 220 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 7/150 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGP 130 +P++ ++ + +D +G DD + KP H+ E+LAR+ AI RR K N+ G Sbjct: 73 MPVLILTARDAWHERVDGLKAGADDYLGKPFHNAELLARLEAIARRGAGKADNSLHWNGV 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + L E R+L YLM N +KT++ +Y D+ + NV+ Sbjct: 133 TLDIDQQCAQQAPHSPIQLTAIEFRLLRYLMLNPLHFHSKTRLSEHVYE-EDQIKDSNVI 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E +I++LR+ G D ++++R GY + Sbjct: 192 EVYINRLRQ----YFGKDFIETRRGQGYRL 217 >gi|295102835|emb|CBL00380.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 228 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 7/135 (5%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYR----RLKVSNNRAETGPIRVFSDGRDPEVQGEV 146 + G DD V KP RE++ARV A+ R + S++ G + + + +V GE Sbjct: 92 LEGGADDYVVKPFSPRELVARVKAVLNRTMPRTEASDSTMTFGELSIDTASHTVKVSGEE 151 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L +E +L +L +N+G +++ +I ++ +D E+ V++H+ LR L G Sbjct: 152 VSLTPKEFDLLVFLASNKGIALSREKILQKVWN-YDYFGEDRTVDTHVKMLRGHLGKCRG 210 Query: 207 FDPVDSKRFLGYSID 221 + + + +GY D Sbjct: 211 Y--IATVWGIGYKFD 223 >gi|295132377|ref|YP_003583053.1| two-component system response regulator [Zunongwangia profunda SM-A87] gi|294980392|gb|ADF50857.1| two-component system response regulator [Zunongwangia profunda SM-A87] Length = 227 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 8/132 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRAETGPIRVFSDGRDPEVQGEVF 147 FD+G DD + KPI + ++++V A+ RR + +N + G I + D E Sbjct: 98 FDAGADDYITKPIKPKVLVSKVKALLRRFRDEETGSNIVKVGEIVINRDEYKVVKNKEEM 157 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 LPR+E +L L + GK + I ++G + V ++ HI +KLR K+G Sbjct: 158 ILPRKEFELLSLLASKPGKVFKREDILDKVWG-NEVVVGGRTIDVHI----RKLREKIGD 212 Query: 208 DPVDSKRFLGYS 219 D + + +GY Sbjct: 213 DSFKTVKGVGYK 224 >gi|225567922|ref|ZP_03776947.1| hypothetical protein CLOHYLEM_03995 [Clostridium hylemonae DSM 15053] gi|225163210|gb|EEG75829.1| hypothetical protein CLOHYLEM_03995 [Clostridium hylemonae DSM 15053] Length = 225 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 15/158 (9%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR VP++ +S Q L ++ G DD + KP+ + A+V A+ +R + Sbjct: 65 RQIRKSQNVPVLIMSAKSGKQNKLTGYELGADDYMEKPVDPEILSAKVNALLKR----SG 120 Query: 125 RAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 RA+ +G I + R ++G+ L +E +L + N GK + K IF ++ Sbjct: 121 RAQEEMLLVSGEITLNRKARTVNLRGKPLELNVKEYELLLLFVRNPGKTLRKEYIFGNVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 G D E + HI LR K+ +P + KR L Sbjct: 181 GT-DSFSESQTLTVHIKMLRAKIEE----NPREPKRIL 213 >gi|221311269|ref|ZP_03593116.1| hypothetical protein Bsubs1_18031 [Bacillus subtilis subsp. subtilis str. 168] gi|291485812|dbj|BAI86887.1| hypothetical protein BSNT_04948 [Bacillus subtilis subsp. natto BEST195] Length = 248 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 7/168 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-- 114 G E +IR +S P+ ++ S L F G DD + KP + E+ AR+ A Sbjct: 71 GMSGFEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHL 130 Query: 115 --IYRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 Y+ + S+N+ T FS + V GE + ++L+Y + ++K Sbjct: 131 KRTYQSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKD 190 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218 QI+ ++G + + N V HI KLR+K+ R+ + + + R LGY Sbjct: 191 QIYEKVWG-YPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGY 237 >gi|219566942|dbj|BAH04973.1| response regulator transcription regulator [Ralstonia solanacearum] Length = 246 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 5/115 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEV 146 F++GVDD++ E+ ARV + RR + A GP R+ R V Sbjct: 92 FEAGVDDLLTGHFTAEELRARVQRVLRRSEQPRQNASMHVVVGPYRLCRLTRTATVNEAP 151 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L RE L ++ G +++ QI SA++G D ++ E +E HI KLRKKL Sbjct: 152 IRLTAREFATAWLLFSSPGTFLSRQQIASAVWGA-DASIVERSIEQHIYKLRKKL 205 >gi|172041315|ref|YP_001801029.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171852619|emb|CAQ05595.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 256 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 9/117 (7%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD-GRDPEVQ-----GEVF 147 G DD V KP E++ R+ I RR V+ + +E + + D D ++ GEV Sbjct: 123 GADDYVTKPFSLEEVITRLRVILRR--VAKDDSEESSLITYEDITLDDDMHEVTKAGEVV 180 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 L E ++L YLM N ++K++I ++ +D + NVVES++S LR+K+ K Sbjct: 181 DLSPTEFQLLRYLMVNAEVVLSKSKILDHVWN-YDFGGDGNVVESYVSYLRRKIDTK 236 >gi|154483356|ref|ZP_02025804.1| hypothetical protein EUBVEN_01059 [Eubacterium ventriosum ATCC 27560] gi|149735866|gb|EDM51752.1| hypothetical protein EUBVEN_01059 [Eubacterium ventriosum ATCC 27560] Length = 220 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 77/153 (50%), Gaps = 3/153 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP+I ++ S + G DD + KP +L R+ I++R++ ++R Sbjct: 67 IRKVSDVPIIMVTSRTSEVDEVLTMSYGADDFITKPYSPTVLLLRIQNIFKRMEPKSDRI 126 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + + + L + E I YL+ NR K V + ++ + ++ +E + Sbjct: 127 RYKDLEINIGKGSISNGSKEINLTKNEMIIFSYLLNNREKIVTRDELMTDLWN-NEEYIN 185 Query: 187 ENVVESHISKLRKKLRNKLGFD-PVDSKRFLGY 218 +N + +IS+LR KL +++G+D +++++ GY Sbjct: 186 DNALTVNISRLRNKL-SEVGYDKAIETRKGQGY 217 >gi|254250783|ref|ZP_04944102.1| two component transcriptional regulator [Burkholderia cenocepacia PC184] gi|124879917|gb|EAY67273.1| two component transcriptional regulator [Burkholderia cenocepacia PC184] Length = 282 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 24/210 (11%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-V 73 Y + DG EG LE W A+ L+ G LE+ R RA ++ Sbjct: 72 YEVVHSADGA--EGLRLLEQGNW---------DALILDLMLPGVDGLEICRRARAMTRYT 120 Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPI 131 P+I S S + + G DD + KP E++ARV A+ RR+ ++R + G + Sbjct: 121 PIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDALARDSRIDAGTL 180 Query: 132 RVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 V DP V G L RE +L + + GK ++ + +A++G E Sbjct: 181 DVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDLLNAVWGYQHEGY- 239 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 E+ V +HI++LR K+ DP + R L Sbjct: 240 EHTVNTHINRLRAKIEA----DPAEPVRIL 265 >gi|123443580|ref|YP_001007553.1| DNA-binding response regulator CreB [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090541|emb|CAL13410.1| putative response regulator [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 232 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 12/138 (8%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVF 147 G DD + KP RE+ ARV + RRL+ S + A + + F + G +V Sbjct: 96 GADDYIAKPFSPREVSARVRTVLRRLQKSQSLATSATLHQFGNFTLDEAGARVTYHQQVL 155 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L R E +L+ L+ + ++ Q+ ++ +E+ ++ V++HI LR KLR + + Sbjct: 156 WLTRYEYLLLKTLLLAPDRVFSRQQLMDIVWAQAEES-QDRTVDTHIKTLRSKLR--MTY 212 Query: 208 D---PVDSKRFLGYSIDW 222 D P+ + R LGYS+ + Sbjct: 213 DEESPIRTHRGLGYSLTY 230 >gi|119486641|ref|ZP_01620691.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119456258|gb|EAW37390.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 243 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 8/143 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR+ Sbjct: 71 LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDKNGASG 130 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ + IR+ ++ R E L E +LE L++ G+ ++++I ++G Sbjct: 131 IPSSGVIQVATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 190 Query: 180 LFDE-AVEENVVESHISKLRKKL 201 E V+ VV+ HIS+LR KL Sbjct: 191 YTPERHVDTRVVDVHISRLRAKL 213 >gi|41407014|ref|NP_959850.1| hypothetical protein MAP0916 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464125|ref|YP_880347.1| two component response transcriptional regulator MprA [Mycobacterium avium 104] gi|254773974|ref|ZP_05215490.1| two component response transcriptional regulatory protein MprA [Mycobacterium avium subsp. avium ATCC 25291] gi|81700688|sp|Q742C1|MPRA_MYCPA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012422|sp|A0QBQ9|MPRA_MYCA1 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|41395365|gb|AAS03233.1| hypothetical protein MAP_0916 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165412|gb|ABK66309.1| mycobacterial persistence regulator mrpa [Mycobacterium avium 104] Length = 228 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 10/147 (6%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R+ +P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR Sbjct: 60 LEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRT 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQI 173 K ++ AE+ + FSD V EV L R E +LE L+AN + + +++I Sbjct: 120 KPEDD-AESVAM-TFSDLTLDPVTREVTRGQRRISLTRTEFALLEMLIANPRRVLTRSRI 177 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKK 200 ++G FD N +E ++ LR+K Sbjct: 178 LEEVWG-FDFPTSGNALEVYVGYLRRK 203 >gi|129157|sp|P28257|YCF27_GALSU RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|73047|pir||RGKKOR regulatory protein ompR - red alga (Cyanidium caldarium) chloroplast gi|11279|emb|CAA44458.1| regulatory protein [Cyanidium caldarium] gi|254505|gb|AAA10400.1| OmpR-like protein [Cyanidium caldarium] Length = 255 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 9/146 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSN 123 IR S +P+I ++ + + + G DD V KP +E+ AR+ + RR+ SN Sbjct: 73 IRKESDIPIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRRVDKFYFSN 132 Query: 124 NRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +G I ++ + + E L E +LE L++N G+ +++T I ++ Sbjct: 133 TFTNSGIINIGFLKIDINRKQVYKNEERIRLTGMEFNLLELLISNSGEPLSRTTILEEVW 192 Query: 179 GLFDE-AVEENVVESHISKLRKKLRN 203 G E ++ VV+ HIS+LR KL + Sbjct: 193 GYTPERHLDTRVVDVHISRLRAKLED 218 >gi|319744631|gb|EFV96979.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 221 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 81/161 (50%), Gaps = 4/161 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S +P++ ++ + + +D F + VD V KP + AR+ ++ ++ Sbjct: 63 LEVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNF 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E + V + ++ E + +E IL+ L+ N G+ + + QI ++ Sbjct: 123 GHLEKFEYKNLSVNFNSYTAKINDEKIDVNAKELEILKCLLDNDGQVLTRMQIIDYVWKD 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + VV+ +I +LRKKL+ D + + R +GY ++ Sbjct: 183 SEEIPYDRVVDVYIKELRKKLQ----LDCITTIRNVGYKLE 219 >gi|288918433|ref|ZP_06412785.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] gi|288350196|gb|EFC84421.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] Length = 227 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 7/163 (4%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +RA + P++ +S ++ + D G DD + KP E+ AR+ A+ RR Sbjct: 61 EVCRRLRAAGRWSPVLMLSARGAVTDRVRGLDVGADDYLPKPFSFDELSARIRALIRR-- 118 Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ R E +R+ GR G L +E +LEYLM + G+ + +T I + Sbjct: 119 GAHERPVVLEVDGLRLDPAGRTVSRDGVPLDLSPKEFALLEYLMRHPGEALRRTAILEHV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NVV+ +++ LR+K+ G +++ R GY + Sbjct: 179 WDFAYDGT-SNVVDQYVAYLRRKIDKPFGTSQLETVRGAGYRL 220 >gi|257465004|ref|ZP_05629375.1| transcriptional regulatory protein [Actinobacillus minor 202] gi|257450664|gb|EEV24707.1| transcriptional regulatory protein [Actinobacillus minor 202] Length = 221 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/154 (25%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRA 126 + ++ +P++ ++ +L + F++G DD + KP E++ R+ A+ RR + ++ Sbjct: 68 KENNHIPVLILTARDTLDERILGFNAGADDYLCKPFALMEVVVRLQALIRRSHQQVSSEI 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + S R + GE L +E R+LE ++ + + ++ I +Y +D V Sbjct: 128 VIGDLVIDSHTRRVTLNGEDISLTAKEFRLLELFAHHKDRVLPRSLIEEKLYS-WDNEVS 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N +E +I LRK KLG V + +GY + Sbjct: 187 SNALEVYIHNLRK----KLGKSWVKTVHGVGYKL 216 >gi|296135753|ref|YP_003642995.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295795875|gb|ADG30665.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 242 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 103/217 (47%), Gaps = 17/217 (7%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66 R L ++G+IA V+++G + L L + D+ ++A L G+ G VL Sbjct: 35 RGLGENGFIA-----DVAVDGTDGLH----LALTQPYDLIVLDAMLPGRDGWSVLS---E 82 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125 +RA P++ ++ + + + G DD + KP E+LARV ++ RR + + Sbjct: 83 LRARQTTPVLMLTARDGVADRVRGLELGADDYLVKPFAFSELLARVRSVLRRGVTRMPDV 142 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 E +RV + E G+ L +E +L L G+ +++T I ++ + FD Sbjct: 143 MEVADLRVDMHRQRAERSGQRLALTPKEFALLALLSRRAGEVLSRTLIAEQVWDMNFDS- 201 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVV+ HI +LR KL + + R +GY ++ Sbjct: 202 -DTNVVDVHIRRLRSKLDEPFPAPLLHTVRGVGYVLE 237 >gi|238926849|ref|ZP_04658609.1| two component response regulator [Selenomonas flueggei ATCC 43531] gi|238885381|gb|EEQ49019.1| two component response regulator [Selenomonas flueggei ATCC 43531] Length = 225 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 3/141 (2%) Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGPIRVFSDGRDP 140 S++ + D+G DD + KP E+LAR+ A+ RR ++ + E G ++ Sbjct: 83 SVEDRVKGLDAGADDYLVKPFEFSELLARLRALGRRSTQRIQHEVDEIGGFKLNRTANIL 142 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 E G++ L RE ++ + L N G V + I I+GL + V N ++S++ LRKK Sbjct: 143 EKNGKIIQLSPREFQLFDLLAQNIGIVVPRDIILDRIWGL-EADVSSNNIDSYMKMLRKK 201 Query: 201 LRNKLGFDPVDSKRFLGYSID 221 L + + R +GY ++ Sbjct: 202 LDAAGEEASIKTIRGVGYKLE 222 >gi|238060857|ref|ZP_04605566.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882668|gb|EEP71496.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 233 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 13/150 (8%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R++R ++ P++ ++ + + G DD V KP E+ AR+ A+ RR Sbjct: 68 EVIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR-- 125 Query: 121 VSNNRAETGPIRV-FSDGR-DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + P R+ F+D D E G+ L E ++L YLM N + ++K QI Sbjct: 126 --TANGDQAPSRLTFADLELDEETHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ +D ++N+VES+IS LR+K+ N Sbjct: 184 LDHVWN-YDFRGDDNIVESYISYLRRKVDN 212 >gi|229824857|ref|ZP_04450926.1| hypothetical protein GCWU000182_00206 [Abiotrophia defectiva ATCC 49176] gi|229790860|gb|EEP26974.1| hypothetical protein GCWU000182_00206 [Abiotrophia defectiva ATCC 49176] Length = 226 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 12/162 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VPL+ IS + G DD + KPI+ + + A++ A+ RR S + A Sbjct: 66 IREISKVPLMFISSKSEDIDIVQAMQFGGDDYIVKPINIQIVRAKIVALLRR---SYDFA 122 Query: 127 ET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E G I++ E G+ L R E ILE L ++G + +I + Sbjct: 123 EETDYLAFGNIKLLLSAAKLEFMGKAAELTRTELMILETLFKDKGAVSKRDKIMDKCWQE 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 + +++N + ++++LRKKL ++G D + +K+ +GY ++ Sbjct: 183 -ENFIDDNTLAVNMTRLRKKLA-EIGLDGFIQTKKGIGYFLN 222 >gi|227549025|ref|ZP_03979074.1| possible response regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227078879|gb|EEI16842.1| possible response regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 225 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 90/178 (50%), Gaps = 27/178 (15%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VLE R +R +P+I ++ +++ + + G DD + KP E+LARV Sbjct: 60 GADVLEQLRALR--ETLPIIVLTARTNIEDRIRSLEGGADDYMPKPFQFAELLARV---- 113 Query: 117 RRLKVSNNRAET------GPIRVFS-----DGRDPEVQ-GEVFP-LPRRERRILEYLMAN 163 RL++++ A + G R+ D R V+ G + L RRE +LE LM + Sbjct: 114 -RLRLADRAASSEDSPTDGGFRLSRGDLTLDLRTQRVKVGSTWKDLSRREVGLLETLMRH 172 Query: 164 RGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G+ +++ Q+ S ++G+ FD NVV+ + LRK K+G + V++ R GY + Sbjct: 173 PGQILSRAQLLSMVWGMDFDPG--SNVVDVFVRALRK----KIGAEKVETIRGSGYRL 224 >gi|49480400|ref|YP_039253.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331956|gb|AAT62602.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 223 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R + +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 ++G F+ V+ + +LRKKL Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKL 204 >gi|41407093|ref|NP_959929.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466690|ref|YP_880417.1| KDP operon transcriptional regulator KdpE [Mycobacterium avium 104] gi|254774017|ref|ZP_05215533.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium avium subsp. avium ATCC 25291] gi|41395444|gb|AAS03312.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167977|gb|ABK68874.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium avium 104] Length = 226 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 9/157 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125 +R P+I +S ++ D+G DD V KP E LAR+ A RR ++ Sbjct: 67 LRGWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNTAASEME 126 Query: 126 ---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ET V + G L E +LE L+ NRGK V + ++ ++G Sbjct: 127 QPVVETESFTVDLAAKKVTKNGSEVHLTPTEWGMLEVLVRNRGKLVGREELLKEVWGPA- 185 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 A E + + ++++LR+KL N DP K L S Sbjct: 186 YATETHYLRVYLAQLRRKLEN----DPSHPKHLLTES 218 >gi|83747868|ref|ZP_00944901.1| HrpG [Ralstonia solanacearum UW551] gi|207739208|ref|YP_002257601.1| response regulator protein [Ralstonia solanacearum IPO1609] gi|83725515|gb|EAP72660.1| HrpG [Ralstonia solanacearum UW551] gi|206592581|emb|CAQ59487.1| response regulator protein [Ralstonia solanacearum IPO1609] Length = 245 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 5/115 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEV 146 F++GVDD++ E+ ARV + RR + A GP R+ R V Sbjct: 92 FEAGVDDLLTGHFTAEELRARVQRVLRRSEQPRQNASMHVVVGPYRLCRLTRTATVNETP 151 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L RE L ++ G +++ QI SA++G D ++ E +E HI KLRKKL Sbjct: 152 IRLTAREFATAWLLFSSPGTFLSRQQIASAVWGA-DASIVERSIEQHIYKLRKKL 205 >gi|332523446|ref|ZP_08399698.1| transcriptional regulatory protein WalR [Streptococcus porcinus str. Jelinkova 176] gi|332314710|gb|EGJ27695.1| transcriptional regulatory protein WalR [Streptococcus porcinus str. Jelinkova 176] Length = 236 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 13/155 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S +P+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 61 LEVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTE 120 Query: 121 V------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 N G +++ D + G+ L RE +L +L + G+ + Sbjct: 121 TIETAVAEENASSGNQELTIGNLQILPDAFLAKKYGKEVELTHREFELLHHLANHIGQVM 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + ++G +D + V+ + +LR+K+ + Sbjct: 181 TREHLLETVWG-YDYFGDVRTVDVTVRRLREKIED 214 >gi|325696360|gb|EGD38251.1| DNA-binding response regulator [Streptococcus sanguinis SK160] Length = 234 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD + KP +E+LAR+ ++ RR+ + N + G + G + L Sbjct: 92 LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202 +E +++E+LM N K ++ +IF ++ DE ++E V +IS LR+KL+ Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWANDEDEDLDEGFVWIYISYLRQKLK 204 >gi|310779946|ref|YP_003968278.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309749269|gb|ADO83930.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 222 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 3/160 (1%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 LE+ RI+R +I +S +Q ++ D+G DD + KP E+LAR+ A+ RR Sbjct: 60 LEVCRILRREKNPAYIILLSAKDQVQDKVEGLDAGADDYLTKPFVFAELLARIRAVLRRN 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N E + V R+ + G+ L +E +LEY + N+ + +T I ++ Sbjct: 120 SEDKENIIEAKGLTVNLLNREVKRGGKDIELTLKEFSLLEYFIRNKNLVLTRTMIAEKVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + D + NVV+ +I+ LRKK+ + + R +GY Sbjct: 180 NI-DFLTDTNVVDVYINHLRKKIDKDFDDKLIYTVRGVGY 218 >gi|307687807|ref|ZP_07630253.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] Length = 218 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR+ S VP+I I+ + L G DD + KP + + +LAR+ ++ +R + N Sbjct: 63 IRSFSTVPIIFITSRDTNVDELMSITLGGDDFITKPYNAQILLARINSLLKRSYPNENAG 122 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E I++ E + + L + E +IL YL+ N+G+ V + I L+D Sbjct: 123 EFIEYNGIKLNILSSKVEYEDKEIELTKNELKILHYLLINKGRIVTRVDIMEY---LWDS 179 Query: 184 A--VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A V +N + +I++LR K + + + +KR GY + Sbjct: 180 ALFVNDNTLTVNITRLRNKFEDIGVKEFIKTKRGQGYIV 218 >gi|293374354|ref|ZP_06620681.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|292647017|gb|EFF65000.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] Length = 230 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 8/143 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S VP++ ++ Y F +G DD + KP + ++L RV A+ RR ++ Sbjct: 67 IRQKSFVPILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKALLRRAYQYHSTT 126 Query: 127 ET--------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + V + ++G+ L E IL L+ +R K + QI+ +I+ Sbjct: 127 QVKVEPTITIGDLVVDLNSTRVILEGKEVSLTTTEYEILRLLITHRKKIFSMEQIYQSIW 186 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 + + +N V H+ LRKK+ Sbjct: 187 NDSGQVIGDNAVMVHVRNLRKKI 209 >gi|266621124|ref|ZP_06114059.1| DNA-binding response regulator RegX3 [Clostridium hathewayi DSM 13479] gi|288867229|gb|EFC99527.1| DNA-binding response regulator RegX3 [Clostridium hathewayi DSM 13479] Length = 229 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 10/150 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G L + +R + +P++ IS S L + G DD + KP +LA+V A+ Sbjct: 58 GRSGFSLCKKLREQTDIPILFISARTSDDDILTALNIGGDDYITKPYTLSVLLAKVKAVL 117 Query: 117 RRLKVSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +R S E P+R+ V G+ L E R+L YL N G+ V K Sbjct: 118 KRCARS---GEAVPLRIADVEIDLSAHKVTVGGKPVKLKEMEFRLLTYLAQNLGRVVTKE 174 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ ++ D V E + HI LR+K+ Sbjct: 175 ELLENVWP--DPYVGEGTLSVHIRHLREKI 202 >gi|228951142|ref|ZP_04113258.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808552|gb|EEM55055.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 225 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S +P+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N + + D V E L E +L + + +++ Q+ I+G Sbjct: 119 TNEHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K F P+D K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 220 >gi|229180716|ref|ZP_04308054.1| Two-component response regulator [Bacillus cereus 172560W] gi|228602694|gb|EEK60177.1| Two-component response regulator [Bacillus cereus 172560W] Length = 248 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 78 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 137 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 138 SAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLEA-- 195 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 196 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 238 >gi|229816268|ref|ZP_04446577.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM 13280] gi|229808119|gb|EEP43912.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM 13280] Length = 250 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 12/161 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE+V R IR S VP+I ++ ++ + + G DD + KP RE++ARV A++ Sbjct: 75 GERVC---RAIRDTSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALF 131 Query: 117 RRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR ++ + G + + G V+G+ L E ++L L + G+ + + Sbjct: 132 RRAHQADEPQVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRME 191 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 + + G +D E ++SH+ K LR KLG DP K Sbjct: 192 LVEKVLG-YDFEGYERTIDSHV----KNLRAKLGDDPKKPK 227 >gi|169349770|ref|ZP_02866708.1| hypothetical protein CLOSPI_00508 [Clostridium spiroforme DSM 1552] gi|169293845|gb|EDS75978.1| hypothetical protein CLOSPI_00508 [Clostridium spiroforme DSM 1552] Length = 227 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 10/163 (6%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R R + P+I ++ S L + G DD V KP + +LAR+ A+ +R Sbjct: 69 LCREYRKIANKPIIIVTSRNSELDELMCINYGADDFVTKPYNPLILLARIEAVLKR---- 124 Query: 123 NNRAETGPIR---VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N E I + D + +V L + E +I YL+++RG +++ ++ S + Sbjct: 125 TNPKEELTINYQDICLDVSKSSIIKNNQVVDLSKNELKIFYYLLSHRGMIISREKLMSYL 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + D V++N + +I++LRKKL + D + +KR GY I Sbjct: 185 WD-SDMFVDDNTLTVNINRLRKKLEDVGLKDVILTKRKQGYII 226 >gi|196036337|ref|ZP_03103735.1| DNA-binding response regulator [Bacillus cereus W] gi|195991129|gb|EDX55099.1| DNA-binding response regulator [Bacillus cereus W] Length = 223 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R + +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 ++G F+ V+ + +LRKKL Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKL 204 >gi|313898763|ref|ZP_07832297.1| putative transcriptional regulatory protein CusR [Clostridium sp. HGF2] gi|312956345|gb|EFR37979.1| putative transcriptional regulatory protein CusR [Clostridium sp. HGF2] Length = 222 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 3/134 (2%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A Q+P+I I+ S+Q + G DD + KP E+ ARV ++ RR S Sbjct: 67 AQLQIPVIFITAKGSVQDRVKGLHMGADDYLVKPFAVDELTARVESVLRRYHKSMQDIHV 126 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 + + + R E + L ++E +L YL+ N+ + + ++ ++ +E E+ Sbjct: 127 LDVTIHTATRLVEKENRTIALTKKEYELLLYLVQNKNIALYRDTMYEKVW--HEEEFEQT 184 Query: 189 -VVESHISKLRKKL 201 ++ HI +LRKKL Sbjct: 185 RTLDLHIQRLRKKL 198 >gi|300722371|ref|YP_003711657.1| response regulator in two-component regulatory system with KdpD [Xenorhabdus nematophila ATCC 19061] gi|297628874|emb|CBJ89457.1| response regulator in two-component regulatory system with KdpD, regulation of potassium translocation (OmpR family) [Xenorhabdus nematophila ATCC 19061] Length = 231 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 16/163 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++L R +R S +P+I +S + Q + D+G DD ++KP E+LARV RRL Sbjct: 66 IDLIREVRQWSNIPIIVLSARDNEQDKVAALDAGADDYLSKPFGINELLARVRVALRRLS 125 Query: 121 VSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ P+ FSD R + Q E+ P E R+L L+ N GK + + + Sbjct: 126 KA---SQFNPVIYFSDIQVDLVNRRVLKGQNELHLTP-IEYRLLTELITNSGKVLTQRYL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + ++G VE N ++ LR KL DP K L Sbjct: 182 LNHVWG--PNYVEHN---HYLRIYMGHLRQKLEADPARPKYLL 219 >gi|262274265|ref|ZP_06052076.1| DNA-binding response regulator KdpE [Grimontia hollisae CIP 101886] gi|262220828|gb|EEY72142.1| DNA-binding response regulator KdpE [Grimontia hollisae CIP 101886] Length = 225 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 73/140 (52%), Gaps = 4/140 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +RA S+ P++ ++ + ++G +D ++KP RE++AR+ + R L ++ + Sbjct: 68 VRASSKTPILILTARDQEDEKIRLLEAGANDYLSKPFGVRELIARIKVLVRDLVNTDTLS 127 Query: 127 ---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 E +++ + GE L ++E +E LMA G+ V ++++ + I+G E Sbjct: 128 DILEYNRLKINKSTHQAWIDGEEVSLTKKEFAFIEKLMAPPGRLVKQSELLTTIWGQSHE 187 Query: 184 AVEENVVESHISKLRKKLRN 203 + + + +S+LRKKL + Sbjct: 188 N-DTHYLRILVSQLRKKLHD 206 >gi|261251207|ref|ZP_05943781.1| transcriptional regulator [Vibrio orientalis CIP 102891] gi|260938080|gb|EEX94068.1| transcriptional regulator [Vibrio orientalis CIP 102891] Length = 219 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/222 (22%), Positives = 107/222 (48%), Gaps = 12/222 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + DG + G E F+S + Q + D+ ++ L G+ V Sbjct: 5 LLLVEDDKNLADGLLVSLEQAGY--ECFHSETIADVAQYWDKADLVILDRQL-PDGDSVT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 LP + +VP+I ++ +++ + D+G +D + KP E+ AR+ A R + Sbjct: 62 HLPEW-KNIKEVPVILLTALVTVKDKVMGLDAGANDYLTKPFAEAELFARIRAQLRAPEG 120 Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + +++ T + + R+ + + E L R E +L +L +N G+ + ++ ++ Sbjct: 121 DAIDDSKVTTEHLIIDKATREVQYKDEAITLTRTEFDLLLFLASNLGRVFTRDELLDHVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G ++ V++H+ +LR+KL G + +++ R +GY + Sbjct: 181 G-YNHFPTTRTVDTHVLQLRQKLP---GLE-IETLRGVGYKM 217 >gi|256424555|ref|YP_003125208.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256039463|gb|ACU63007.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 231 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 10/171 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G K+LE I + Q +I IS S + + +G DD + KP + E+ AR+ ++ Sbjct: 59 GSKLLE--EIKKRDKQEGVIIISARQSYEDKIHALQNGADDYITKPFYLPELGARIFSVI 116 Query: 117 RRLKVSN-NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT---- 171 RR K +N N G + V + + L R+E +L Y + N+ K ++K Sbjct: 117 RRRKYNNSNIIRQGALTVDLLAKTVYINELPVLLTRKEFDLLIYFIGNKNKVLSKQELAE 176 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 Q+ I GL D + NV+ +HI L+KKL+ + + + GY D+ Sbjct: 177 QLSGDIAGLRD---DHNVIYAHIKNLKKKLQEGGAGNYLKTIYATGYKWDF 224 >gi|229098996|ref|ZP_04229931.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-29] gi|228684494|gb|EEL38437.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-29] Length = 230 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 7/149 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 LE+ RIIR S VP++ +S + G DD + KP E+ ARV A I R Sbjct: 62 LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K S I++ DP E G L +E IL+ + N+ + K QI+ Sbjct: 122 KYSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++ + ++NV+ H+ +LR+K+ + Sbjct: 182 TLVWN-EEYYGDDNVINVHMRRLREKIES 209 >gi|300854423|ref|YP_003779407.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434538|gb|ADK14305.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 231 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 77/156 (49%), Gaps = 10/156 (6%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRA 126 A S +P+I I+ + + G DD + KP RE++ARV A+ RR LK + Sbjct: 74 AISFIPVIMITARGEEFDKVLGLELGADDYMTKPFSIRELVARVKAVLRRTALKPVDKCY 133 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + D + GE L +E +L+ L+ NRG+ + + + I+G ++ E Sbjct: 134 VFGQVSIDFDKHEVIKNGEKVELTLKEFELLKMLIKNRGRVMTRDFLLDKIWG-YEYVGE 192 Query: 187 ENVVESHISKLRKKLRNKLGFDP----VDSKRFLGY 218 V+ HI LR+K+ + FD +++ R +GY Sbjct: 193 TRTVDVHIRHLRQKIED---FDKKPKYIETIRGIGY 225 >gi|300705095|ref|YP_003746698.1| response regulator transcriptional regulator protein [Ralstonia solanacearum CFBP2957] gi|299072759|emb|CBJ44112.1| putative response regulator transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 246 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 13/136 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP 150 G DD + KP H E+ ARV A+ RR + + GP R + GE L Sbjct: 95 GADDYIAKPFHIPELRARVEALLRRAYPVPYAGTPFAVGPYHFNPQRRQVTLHGEHLALT 154 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV 210 E ++ L AN G+ +++ IF ++G + A ++SH+S++R KL +PV Sbjct: 155 GIEFQLAMLLFANVGRTLSRDHIFGQVWGR-NSAEYTRTIDSHVSRIRLKLH----VEPV 209 Query: 211 DSKRFL-----GYSID 221 + R GY +D Sbjct: 210 NEVRLAAVYKHGYRLD 225 >gi|317128535|ref|YP_004094817.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315473483|gb|ADU30086.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 238 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 15/157 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +E+ IR H P+I ++ + F++G DD + KP RE++ RV A+ RR Sbjct: 64 IEVCEEIRKHKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSS 123 Query: 119 -LKVSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 K T + VF +D G+ L +E +L YL + K A+ Sbjct: 124 STKFLQTETTTKDVLVFPHLTIDNDAHRITADGKHINLTPKEYELLHYLAQSPDKVFARE 183 Query: 172 QIFSAI--YGLFDEAVEENVVESHISKLRKKLRNKLG 206 Q+ + Y F + V++HI +LR+KL NK+ Sbjct: 184 QLLKDVWNYEFFGDL---RTVDTHIKRLREKL-NKVS 216 >gi|225850705|ref|YP_002730939.1| two component transcriptional regulator, winged helix family [Persephonella marina EX-H1] gi|225645599|gb|ACO03785.1| two component transcriptional regulator, winged helix family [Persephonella marina EX-H1] Length = 214 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 75/147 (51%), Gaps = 7/147 (4%) Query: 56 KGEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 KGE++L R IR VP++ ++ ++ F+ G DD + KP +E+L R+ A Sbjct: 58 KGEEIL---RDIRNRGVDVPVLILTAKSDIRDKEVCFNLGADDYLTKPFDPKELLLRLKA 114 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +R K + G I + D + +GE L R +L L+ NRG V +I Sbjct: 115 LSKR-KHREYCVKIGDITIDIDNQMVYKKGEEVKLSRTAWELLYLLVKNRGSIVPTERIL 173 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 + ++G D+ V + +V ++I +LRK L Sbjct: 174 AYVWG--DKPVGDEIVRTYIKELRKIL 198 >gi|254445907|ref|ZP_05059383.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198260215|gb|EDY84523.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 223 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 3/132 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFSDGRDPEVQGEVFP 148 ++G DD + KP +E+LARV A+ RR+ V +N E G + + R G+ Sbjct: 91 LNAGADDYLTKPFDMKELLARVEALGRRVLPGVDDNILEAGDVVLDVIHRVATRNGDRIE 150 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L RE +L+ L+ G+ ++ ++F I+G ++ E VE + +LRKKL Sbjct: 151 LSPREFSLLQVLIREPGRTFSRGELFERIWG-REQTYEAKTVEIFVMRLRKKLDVPGKPS 209 Query: 209 PVDSKRFLGYSI 220 +++ R +GY + Sbjct: 210 AIETVRGIGYKL 221 >gi|218246258|ref|YP_002371629.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059308|ref|YP_003137196.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218166736|gb|ACK65473.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256589474|gb|ACV00361.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 225 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 85/163 (52%), Gaps = 4/163 (2%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + L R +R+ Q P++ ++ ++ + D+G DD + KP +E+ AR+ A+ RR Sbjct: 60 ISLCRRLRSQGCQTPILMLTARDTVSDRVAGLDAGADDYLVKPFALQELSARIRALMRRG 119 Query: 120 KVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S T G + + + + Q + L +E ++LE+ + + + +TQI ++ Sbjct: 120 DSSLPPVLTWGNLSLNPNTCEVFYQEQPLSLSPKEYKLLEFFLRHPHRVFNRTQILDHLW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L ++ EE V++HIS LR+K++ G D +++ LGY + Sbjct: 180 PL-EQLPEEATVKAHISSLRQKIKAVGGVPDLIETVYGLGYRL 221 >gi|196036865|ref|ZP_03104252.1| DNA-binding response regulator [Bacillus cereus W] gi|195990518|gb|EDX54499.1| DNA-binding response regulator [Bacillus cereus W] Length = 254 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ ++ + F G DD + KP E++ RV A+ +R +++ +++ Sbjct: 97 LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 156 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + + + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 157 IQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 215 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + + + + R LGY ++ Sbjct: 216 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 251 >gi|167769697|ref|ZP_02441750.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM 17241] gi|167668058|gb|EDS12188.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM 17241] Length = 234 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 16/170 (9%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 DV+ ++ + G E+ R IR +S + +I ++ ++ G DD V KP Sbjct: 49 DVAVLDVMM--PGMDGFEVCRRIREKNSSIGIIMLTAKSQEMDKVNGLMIGADDYVTKPF 106 Query: 104 HHREILARVAAIYRRLKVSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERR 155 E++ARV A++RR+ V+ +A+ +GP + R G V L + E + Sbjct: 107 SPSELVARVDALHRRVTVAAEKAQAPAPSELKSGPFVLNMKSRTVSKNGRVLELTQVEYQ 166 Query: 156 ILEYLMANRGKRVAKTQIFSAIY--GLFDEAVEENVVESHISKLRKKLRN 203 ILEY N + + I + ++ G F + +V+ +I +LR KL + Sbjct: 167 ILEYFFNNPNTALGRQDILNKVWGEGYFGDI---KIVDVNIRRLRMKLED 213 >gi|85716031|ref|ZP_01047008.1| Two-component transcriptional regulator, winged helix family protein [Nitrobacter sp. Nb-311A] gi|85697229|gb|EAQ35110.1| Two-component transcriptional regulator, winged helix family protein [Nitrobacter sp. Nb-311A] Length = 242 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 12/150 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE +L R IRA S VP+I ++ + ++ G DD + KP RE++ R+ I Sbjct: 76 GETGFDLARSIRASSPVPIIMLTALHEAENRIEGLQIGADDYLAKPFEPRELVLRIGNIL 135 Query: 117 RR-LKVSNNRAET---GPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKT 171 +R + + R+E+ GP V+ R QG +V L RER +L L A G+ V + Sbjct: 136 KRTIPLPAMRSESIAFGPY-VYHLERGELRQGDDVIHLTDREREMLRMLAATPGETVRRG 194 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ + V E V+ I++LR+K+ Sbjct: 195 ELNAG------GTVNERAVDVQINRLRRKI 218 >gi|327396126|dbj|BAK13548.1| transcriptional regulatory protein QseB [Pantoea ananatis AJ13355] Length = 219 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 18/204 (8%) Query: 30 NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELPR------IIRAHSQ---VPLIG 77 +LE W R+ V A A+ G VL LPR + RA + P++ Sbjct: 18 QALEAAGWSVDWVRDGVYAQNAWSEGGYSCVLLDLGLPRDDGLQVLRRARGRGDATPVLI 77 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGPIRVFSD 136 ++ ++ + D G DD + KP +E++AR+ AI RR S + +G +++ Sbjct: 78 LTARDTVAQRVQGLDYGADDYLLKPFDLQEVMARMRAITRRHHGSADSVLGSGDVQLDML 137 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 R+ +G+ L RE +L L+ G +++ Q+ + IYG + E V N V+ I Sbjct: 138 TREVLYKGQREQLTAREYALLYALLERPGAILSREQLENRIYG-WGEEVSSNAVDVLIHG 196 Query: 197 LRKKLRNKLGFDPVDSKRFLGYSI 220 +R+KL N D + + R LG+ + Sbjct: 197 MRRKLDN----DVIRNVRGLGWRV 216 >gi|291279262|ref|YP_003496097.1| two-component system, OmpR family, response regulator [Deferribacter desulfuricans SSM1] gi|290753964|dbj|BAI80341.1| two-component system, OmpR family, response regulator [Deferribacter desulfuricans SSM1] Length = 215 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 9/151 (5%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE-TGP 130 P+I I+ L F G DD + KP +E+L R+ A+ +R + N+ + Sbjct: 71 NTPVIIITAKFDLSDKETCFLLGADDYITKPFEPKELLLRINAVTKRYFDNQNKISISDE 130 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I + + + E+ PL ++E +L L NRGK V+ I + ++ +EN V Sbjct: 131 IVIDITQQSLFINNELIPLTKKEWELLYVLAKNRGKVVSNECILNYVW-------QENPV 183 Query: 191 ESH-ISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + I KKLR LG D +++ + GY + Sbjct: 184 GTESIRTYIKKLREILGKDLIETHKGRGYRL 214 >gi|269119755|ref|YP_003307932.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] gi|268613633|gb|ACZ08001.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] Length = 217 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/215 (22%), Positives = 97/215 (45%), Gaps = 27/215 (12%) Query: 10 LVKDGYI---ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66 LVK+GYI A G++G+ L F EW D+ ++ + K E+ R Sbjct: 20 LVKNGYIVREAADGEEGLDL-------FYEW-----NPDLVLLDVMMPKKDG--YEVCRA 65 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 I++ P++ ++ + + + G DD + KP + + R+ + + + Sbjct: 66 IKSEKTTPVLMLTAKTQEEDEIRGLEIGADDYIRKPFSLKILELRLKNL-----LGDEIY 120 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G R + ++ + ++ LP +E +L YL N K ++ QI + ++ L E+ + Sbjct: 121 TIGNFRFLKNEKNVYLNEKIVDLPPKEYDLLFYLAKNHSKIFSREQILNNVWDLLCES-D 179 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V++HI LRK K+G + + + + GY + Sbjct: 180 PRTVDTHIKNLRK----KIGHEYITTVKGFGYKFE 210 >gi|229198569|ref|ZP_04325271.1| Two-component response regulator [Bacillus cereus m1293] gi|228584851|gb|EEK42967.1| Two-component response regulator [Bacillus cereus m1293] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 125 STAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQADQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225 >gi|255305488|ref|ZP_05349660.1| putative lantibiotic resistance two-component response regulator [Clostridium difficile ATCC 43255] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 69/149 (46%), Gaps = 9/149 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR P+I +S S + G DD V KP RE++AR+ A RR K Sbjct: 60 FEVCQAIRDDVLCPVIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRREK 119 Query: 121 VSN-----NRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S N+ T G + ++ R ++ G+ L + E I+E L + G+ ++ Q Sbjct: 120 RSQYINEENKRSTLYFGKLWLYMKERAIKIDGKDIDLTKIEYGIVELLALHAGQVFSREQ 179 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I+ ++G E VVE + K+R K Sbjct: 180 IYEKVWGCDSEGDSSTVVE-RVKKIRAKF 207 >gi|226324464|ref|ZP_03799982.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758] gi|225206912|gb|EEG89266.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758] Length = 229 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 14/219 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + V+ D++ +VK +L DD +E + + EE L+ R++ I ++ Sbjct: 5 VLVVDDEKLIVKGLRFSLEQDD---MEVDCAYDGEEALEMVKRKEYDMILLDVMLPKYDG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IR S VP+I ++ + + G DD + KP + E+ AR+ AI RR+ Sbjct: 62 FEVCRQIRDFSDVPVIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARMKAIMRRVA 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIF 174 + + +G + V D + VF L +E +LE L N K ++ + Sbjct: 122 KKDGMSASGKVVVKGDLKIDCESRRVFSGDRELNLTAKEFDLLELLAMNPNKVYSRESLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 + ++G ++ + V+ HI ++LR K+ +P D K Sbjct: 182 NIVWG-YEYPGDARTVDVHI----RRLREKIEVNPSDPK 215 >gi|197336013|ref|YP_002156198.1| FeuP [Vibrio fischeri MJ11] gi|197317503|gb|ACH66950.1| FeuP [Vibrio fischeri MJ11] Length = 218 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 24/207 (11%) Query: 31 SLEFEEWLQSSAREDVSAIEAFLIGKGEKV---LELPRI--------IRAHS-QVPLIGI 78 +LE +W+ +++ V A+ + + + L LP++ IR + P+I + Sbjct: 19 TLESADWVPELSQDGVDALYRATTEEWDAIVLDLGLPKLNGLTVLKSIRDENINTPVIIL 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFS-DG 137 S +L ++ ++G DD + KP E++AR+ A RR S N + I S D Sbjct: 79 SARDTLSQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR--ASGNASPILKIGDLSLDT 136 Query: 138 RDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHI 194 R +V Q + L E +++ Y M N K +++T + IY FD + N VE I Sbjct: 137 RSSKVLWQDQAVSLTALEYKVVAYFMHNPDKVISRTTLVEHIYKQDFDR--DSNTVEVFI 194 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++RKK+ + + + R LGY ++ Sbjct: 195 GRIRKKIAPNI----IKTVRGLGYQLN 217 >gi|206974047|ref|ZP_03234965.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206748203|gb|EDZ59592.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 231 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 13/207 (6%) Query: 27 EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+N + + +E LQ + ++ + ++ LE+ + +R ++ VP++ +S Sbjct: 25 EGYNIYKAYDGDEALQMISTYEIELMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAETGPIRVFS----- 135 + +G DD + KP + E++ARV A+ RR N + E G IR+ S Sbjct: 85 DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNATSPKNEDGMIRIRSAEIHK 144 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 +V GE L E IL L +N G+ + +IF ++ D V HIS Sbjct: 145 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203 Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221 LR KL + G + + +GY I+ Sbjct: 204 NLRDKLETGMNGEKFIHTVWGVGYKIE 230 >gi|118443810|ref|YP_877372.1| DNA-binding response regulator [Clostridium novyi NT] gi|118134266|gb|ABK61310.1| DNA-binding response regulator [Clostridium novyi NT] Length = 227 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 21/191 (10%) Query: 31 SLEFEEWLQSSAREDVSAIEAFLIGKGEKV---LELP-----RIIRA----HSQVPLIGI 78 +L FE + +A +AIE F + V L LP ++I A +++VP+I + Sbjct: 19 NLMFENYEVITAECGKTAIELFQTQSPDLVVLDLMLPDIDGFQVIHAIQEINNEVPIIVL 78 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----VSNNRA----ETGP 130 S + L G DD + KP RE++ R+ AI RR+ +SN + E G Sbjct: 79 SAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRINKAKLLSNKKQSSIIEKGF 138 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I++ D R + + E +L ++ N K + ++ I+G +D + V Sbjct: 139 IKIMKDERRVFIDSKEVIFTHIEFEMLVLMVKNSYKVFTREELLDKIWG-YDFSGNTRAV 197 Query: 191 ESHISKLRKKL 201 + HI ++RKKL Sbjct: 198 DIHIKRIRKKL 208 >gi|94971080|ref|YP_593128.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553130|gb|ABF43054.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 226 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 9/163 (5%) Query: 57 GEKVLELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ ++ R IR S VP++ +S + + + G DD V KP RE+LARV Sbjct: 57 GKSGQDICREIRGFSPNVPILVLSAASDVVDKVLLLELGADDYVTKPFSPRELLARVRTA 116 Query: 116 YRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RRL S ++ E I+V + G+ L +E ++L + + N+ + V++ + Sbjct: 117 LRRLIPSIDKQEVYNFDEIQVDFGKMELLRSGQPVALTPQEFKMLRFFLNNKDRVVSRNE 176 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 + + ++G + V++HI +LR+KL DP D F Sbjct: 177 LLNEVWG-YHSYPTTRTVDTHILRLRQKLER----DPADPIHF 214 >gi|3688536|emb|CAA07190.1| HrpG [Ralstonia solanacearum] Length = 255 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 5/115 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE----TGPIRVFSDGRDPEVQGEV 146 F++GVDD++ E+ ARV + RR + A GP R+ R V Sbjct: 101 FEAGVDDLLTGHFTAEELRARVQRVLRRSEQPRQNASMHVVVGPYRLCRLTRTATVNEAP 160 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L RE L ++ G +++ QI SA++G D ++ E +E HI KLRKKL Sbjct: 161 IRLTAREFATAWLLFSSPGTFLSRQQIASAVWGA-DASIVERSIEQHIYKLRKKL 214 >gi|50118973|ref|YP_048140.1| two-component system response regulator [Pectobacterium atrosepticum SCRI1043] gi|49609499|emb|CAG72932.1| two-component system response regulator [Pectobacterium atrosepticum SCRI1043] Length = 220 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 92/204 (45%), Gaps = 11/204 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D L+ DG A G++ GFN F E + + +A ++ ++ Sbjct: 4 LLIEDDRLIGDGLKA-----GLNKLGFNIDWFTEGKAGATALKAAPYDAVVLDLSLPGMD 58 Query: 63 LPRIIRAHSQV----PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 I+R Q P++ ++ +L+ ++ G DD + KP E+ AR+ A+ RR Sbjct: 59 GMDILRQWRQAGHDEPVLILTARDALEQRVEGLQQGADDYLCKPFALTEVAARLQALIRR 118 Query: 119 LKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 T G + + R + E L RE +LE + N + + + Q+ + Sbjct: 119 RHGQLQPVLTHGAVSLEPSSRSVTLNSEPLILKSRELALLELFLLNPNRVLTRAQLEEKL 178 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 YG +D+ V N VE HI LRKKL Sbjct: 179 YG-WDDDVSSNAVEVHIHHLRKKL 201 >gi|85715372|ref|ZP_01046354.1| Two-component transcriptional regulator, winged helix family protein [Nitrobacter sp. Nb-311A] gi|85697793|gb|EAQ35668.1| Two-component transcriptional regulator, winged helix family protein [Nitrobacter sp. Nb-311A] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 11/155 (7%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 Q P++ +S + + +G DD + KP E+LARV + RR RAE Sbjct: 72 QTPVLILSALGQVDDRVKGLRAGGDDYLPKPYSFAELLARVEVLSRR---HVGRAEETVY 128 Query: 132 RVFSDGRD----PEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAV 185 RV D V+G E L RE R+LEYLM + G+ V +T + ++ FD Sbjct: 129 RVGDLELDRLSHRVVRGVEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVWDYHFDP-- 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ HIS+LR K+ + + R GY I Sbjct: 187 QTNVIDVHISRLRSKIDKGFEQPLLHTIRGAGYMI 221 >gi|301054747|ref|YP_003792958.1| putative response regulator [Bacillus anthracis CI] gi|300376916|gb|ADK05820.1| predicted response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 67 IRKYHDIPVILLTAKDQLVDKERGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 126 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 127 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 186 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221 >gi|296116750|ref|ZP_06835357.1| two component transcriptional regulator, winged helix family protein [Gluconacetobacter hansenii ATCC 23769] gi|295976672|gb|EFG83443.1| two component transcriptional regulator, winged helix family protein [Gluconacetobacter hansenii ATCC 23769] Length = 233 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 73/153 (47%), Gaps = 8/153 (5%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128 + P++ +S ++ + +G DD + KP E+ AR+ A+ RR NN ET Sbjct: 81 RAPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARLEALLRR---PNNSRETMLH 137 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 GP+ + R GE+ L RE R+LEYLM + + + + ++ + + Sbjct: 138 AGPLAMDLIERTVTRNGELIELLPREFRLLEYLMRRPDQVLTRNMLLEDVWN-YRFIPQT 196 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+V+ HI KLR+K+ + S R G+ + Sbjct: 197 NLVDVHIGKLRRKVDEPGAPSLIQSIRGAGFML 229 >gi|269966641|ref|ZP_06180721.1| putative transcriptional regulator CpxR [Vibrio alginolyticus 40B] gi|269828763|gb|EEZ83017.1| putative transcriptional regulator CpxR [Vibrio alginolyticus 40B] Length = 221 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 9/161 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ R I P++ ++ + LD + +G D + KP + E+L R+ AI RR+ Sbjct: 61 MQVARRICQRFATPILMLTALNDENSMLDGYQAGADQYIGKPFNVAELLMRIKAILRRVG 120 Query: 121 VSNNRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R ++ SD Q PL E +L YL+ N+G ++K ++ + + Sbjct: 121 LERQRQTMCSTVQTISD------QLNSLPLTSTEAELLSYLVKNQGVVISKAELQTEVLK 174 Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219 + N ++ HIS +R+KL L + + R GYS Sbjct: 175 KELSPFDRN-LDMHISNIRRKLVEAGLSKQHIKTFRGKGYS 214 >gi|268610730|ref|ZP_06144457.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 224 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 10/145 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 I +P+I +S L F+ GVDD V KP +E++ARV + +R + A Sbjct: 67 IHKSKNIPVIMLSARGEEYDKLFGFEIGVDDYVVKPFSPKELMARVKVVLKRSARQESDA 126 Query: 127 ETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + V GR+ V GE + +E +L YL+ N+ + + ++ ++G + Sbjct: 127 QLDKYVFEGLEVDISGREVYVNGEKASMTPKEYDLLFYLVKNKNIALTRDKLLEEVWG-Y 185 Query: 182 DEAVEENVVESHISKLRKKLRNKLG 206 D ++ V++HI K LRN LG Sbjct: 186 DFFGDDRTVDTHI----KMLRNSLG 206 >gi|302878154|ref|YP_003846718.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] gi|302580943|gb|ADL54954.1| two component transcriptional regulator, winged helix family [Gallionella capsiferriformans ES-2] Length = 220 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 20/167 (11%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + +P+I I+ ++ + D G DD + KP E+LAR+ A+ RR Sbjct: 63 LRRLRLGGNTMPVIIITARDGVEDRIKGLDFGADDYLVKPFDVNELLARLRAVIRR---- 118 Query: 123 NNRAETGPIRVFSDGR---DP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + P+ S+GR DP + + L RE +L L+ G + + ++ Sbjct: 119 -QGGQAAPL--LSNGRVTLDPASHQAQCDDTLVTLSAREFALLHALLLRPGAILTRAELE 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 IYG ++E VE N V+ I +RK KLG D + + R G+ ++ Sbjct: 176 ERIYG-WNEEVESNAVDFLIHGIRK----KLGADAIKNVRGAGWMVE 217 >gi|237756293|ref|ZP_04584848.1| DNA-binding response regulator [Sulfurihydrogenibium yellowstonense SS-5] gi|237691541|gb|EEP60594.1| DNA-binding response regulator [Sulfurihydrogenibium yellowstonense SS-5] Length = 220 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 12/187 (6%) Query: 23 GVSLEGF------NSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRIIRAHSQVPL 75 G+ EGF N EE+L + E V ++ L GK G +LE R P+ Sbjct: 19 GLEEEGFLVDLVSNGATAEEYLNTENYE-VIVLDLMLPGKDGLSILESLR--NRGICTPV 75 Query: 76 IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPIRVF 134 + ++ S++ + ++G DD + KP +E++AR+ A+ RR VS G + V Sbjct: 76 LILTAKGSVEDKIKGLNAGADDYLAKPFDFQELVARIKALIRRYHNVSKGIVSFGDVEVD 135 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 ++ +V+G+ L E ++L L + ++KT I ++YG ++ + + NV+E I Sbjct: 136 LVNQNVKVKGKDVELTAMELKLLMMLALKSNRILSKTYIEQSLYG-WEGSPDSNVIEVLI 194 Query: 195 SKLRKKL 201 S+LRKKL Sbjct: 195 SRLRKKL 201 >gi|228917725|ref|ZP_04081266.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841962|gb|EEM87068.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 234 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 11/144 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--- 123 +R +++P+I +S + +G DD V KP + E++AR+ + RR N Sbjct: 69 VREIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMKMNGRI 128 Query: 124 -----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N E G +++ V E L RE ILE L N+G ++ QI+ ++ Sbjct: 129 SAQNENEVEIGDMKINVTTHKVTVADEEVKLTPREFAILELLARNKGMVMSAEQIYERVW 188 Query: 179 GLFDEAVE-ENVVESHISKLRKKL 201 +EA + +N V HI K+R+K+ Sbjct: 189 K--EEAFQSDNTVMVHIRKIREKI 210 >gi|229013739|ref|ZP_04170867.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides DSM 2048] gi|229135371|ref|ZP_04264160.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST196] gi|228648067|gb|EEL04113.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST196] gi|228747408|gb|EEL97283.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides DSM 2048] Length = 239 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/226 (27%), Positives = 99/226 (43%), Gaps = 31/226 (13%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEK 59 MFV DR + +I L DD E + +E Q + A + + AFL G + Sbjct: 1 MFVKKGDRNM--SHHILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDL 58 Query: 60 V-----------LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108 + LE+ RIIR S VP++ +S + G DD + KP E+ Sbjct: 59 IILDIMMPKLDGLEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIEL 118 Query: 109 LARV-AAIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMA 162 ARV A I R K S ++ I++ DP E +G L +E IL+ + Sbjct: 119 AARVKAGIRRSTKYSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVK 178 Query: 163 NRGKRVAKTQIFSAI-----YGLFDEAVEENVVESHISKLRKKLRN 203 N+ + K QI++ + YG ++NV+ H+ +LR+K+ + Sbjct: 179 NQNRVFTKAQIYTLVWNEEYYG------DDNVINVHMRRLREKIES 218 >gi|254482005|ref|ZP_05095247.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] gi|214037695|gb|EEB78360.1| response regulator receiver domain protein [marine gamma proteobacterium HTCC2148] Length = 231 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 6/163 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R IR + P++ ++ + + G DD + KP + RE+ AR+ AI RR + Sbjct: 62 LDVLRKIRDFTDTPVLMLTARGEDTDRIVGLEMGADDYLPKPCNPRELAARLRAILRRSQ 121 Query: 121 VSN-NRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +++ N ++T G + S R +G L E +L L+ GK V K + Sbjct: 122 LTDTNESQTEVSVGSTTLNSANRTAIHRGVSLNLTSAEFNLLMILLKRAGKIVDKDTLSQ 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G A + + V+ H+SK+R+KL N G + + S R LGY Sbjct: 182 EGLGRPLSAYDRS-VDVHVSKIRRKLANAGGKELIVSVRGLGY 223 >gi|149179235|ref|ZP_01857800.1| two-component response regulator [Planctomyces maris DSM 8797] gi|148841914|gb|EDL56312.1| two-component response regulator [Planctomyces maris DSM 8797] Length = 244 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 24/218 (11%) Query: 1 MFVLIDDRALVK--------DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF 52 + V+ D++AL + +GY L +DG + + F+E +S +E V + Sbjct: 3 LLVVEDEKALAQGLKFNFEQEGYTVLTAEDGPTALNY----FQECYESD-KESVDLVVLD 57 Query: 53 LIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L+ G E+ + IR +V P++ +S + FD G D + KP E+L+R Sbjct: 58 LMLPGMSGYEIAKEIRRIDEVVPILVLSARELSEDKAYAFDCGTDQYMTKPFALPELLSR 117 Query: 112 VAAIYRRLKV-----SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161 V + +R + S +R E G + V + + EV GE L E R+L+Y + Sbjct: 118 VKNLLKRKSLVKPALSQSRKLPALYEFGNVIVDFESFEIEVDGERKSLTNLELRLLKYFI 177 Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 + G + ++QI ++G V +++ + +LRK Sbjct: 178 EHEGMVLTRSQILEDVWGEQSAFVTTRTIDNFVLRLRK 215 >gi|83942173|ref|ZP_00954635.1| two component transcriptional regulator, winged helix family protein [Sulfitobacter sp. EE-36] gi|83847993|gb|EAP85868.1| two component transcriptional regulator, winged helix family protein [Sulfitobacter sp. EE-36] Length = 218 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 10/152 (6%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 + P++ ++ + ++ + G DD V KP E+ AR+ + RR +N A+ + Sbjct: 72 RTPILILTARDKVSDRIEGLNRGADDYVIKPFDLDEVKARIHTVCRR--SANQFAQMVQL 129 Query: 132 R-VFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 V + D V P L +E + E L+ + + V K + +AIY + E VE N Sbjct: 130 HDVVVNLSDHTVMRAEQPVRLTAKEWGVFETLLRRKPQIVPKESLEAAIYD-YGEEVESN 188 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E HIS +LR KLG D + + R LGY++ Sbjct: 189 AIEVHIS----RLRTKLGKDLIATHRGLGYAL 216 >gi|324993651|gb|EGC25570.1| DNA-binding response regulator [Streptococcus sanguinis SK405] gi|324995037|gb|EGC26950.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|327462920|gb|EGF09241.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327474524|gb|EGF19929.1| DNA-binding response regulator [Streptococcus sanguinis SK408] Length = 234 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD + KP +E+LAR+ ++ RR+ + N + G + G + L Sbjct: 92 LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202 +E +++E+LM N K ++ +IF ++ DE ++E V +IS LR+KL+ Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWSKDEDEDLDEGFVWIYISYLRQKLK 204 >gi|320159586|ref|YP_004172810.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319993439|dbj|BAJ62210.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 238 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 74/155 (47%), Gaps = 16/155 (10%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R P++ ++ + + G DD + KP RE+LARV A+ RR+++ Sbjct: 63 ELCRRLRQEMNTPVLMLTARTEEIDRVVGLEVGADDYMTKPFSMRELLARVKAMLRRVRM 122 Query: 122 ---------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 S R +G + + R+ + G V + +E +L +LM +RG+ Sbjct: 123 IREEMQKSEESTQKESEKRLLSGNLELNLARREVRLNGVVVAVKPKEFELLHFLMKHRGQ 182 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +++ + ++G +D + V+ HI LR+K+ Sbjct: 183 VLSRDYLLKELWG-WDYFGDSRTVDVHIRWLREKI 216 >gi|257791686|ref|YP_003182292.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|317487847|ref|ZP_07946440.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|257475583|gb|ACV55903.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|316913122|gb|EFV34638.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 248 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 7/160 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R + AH+ P + ++ + G DD + KP +E++ R+AA+ RR + N Sbjct: 88 RQLPAHTSTPALFLTAKDEPFDRVSGLTLGADDYIAKPFLPQELVLRIAAVLRRCYAAEN 147 Query: 125 R-AETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 E RV F+ G+ PL +E IL L N G+ V + A +G Sbjct: 148 PLLELAASRVNFATAEVERADGQTVPLTAKEHEILSVLARNAGRIVTIDSLCEACWG--T 205 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSI 220 EN + +HI +LR+K+ PV + R LGY + Sbjct: 206 SFGYENSLMAHIRRLREKIEADPS-APVSLVTARGLGYKL 244 >gi|188011573|gb|ACD45086.1| NisR [Lactococcus lactis] Length = 173 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 9/148 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ + IR P+I +S + + ++ G DD + KP ++++A+V A +R + Sbjct: 24 EICKRIRREISTPIIFVSAKDTEEDIINGLGIGGDDYITKPFSLKQLVAKVEANIKREER 83 Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S R + GPI + + R V G+ PL RE ILE L K K I Sbjct: 84 NKHAVHVFSEIRRDLGPITFYLEERRVCVNGQTIPLTCREYDILELLSQRTSKVYTKEDI 143 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 + +Y + A+ ++ E +I ++R K Sbjct: 144 YDDVYDEYSNALFRSISE-YIYQIRSKF 170 >gi|160884401|ref|ZP_02065404.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483] gi|156110140|gb|EDO11885.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483] Length = 224 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 85/166 (51%), Gaps = 8/166 (4%) Query: 61 LELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 LEL R+ R Q+P+I ++ + + + D+G DD + KP +E+ AR+ A+ RR Sbjct: 61 LELCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRR 120 Query: 119 LK-VSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K V +N + + + R + +G++ L +E R+LEY M ++G +++ + Sbjct: 121 NKEVPSNLLTCDNLILDCNTRKAK-RGDIDIDLTVKEYRLLEYFMTHQGVALSRITLLKD 179 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ FD N+V+ +++ LR K+ + + LGY ++ Sbjct: 180 VWDKNFD--TNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIMN 223 >gi|149178427|ref|ZP_01857017.1| two component transcriptional regulator, winged helix family protein [Planctomyces maris DSM 8797] gi|148842744|gb|EDL57117.1| two component transcriptional regulator, winged helix family protein [Planctomyces maris DSM 8797] Length = 231 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/224 (23%), Positives = 106/224 (47%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKV 60 ++++D A + D + ++G +E L +S D+ ++ +L + G ++ Sbjct: 5 ILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 L R + + P++ ++ ++ + D+G DD + KP E+LARV A+ RR Sbjct: 65 LR--RFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPG 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S E IR + + G L +E +L + + N GK +++T+I+ ++ Sbjct: 123 QASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVW- 181 Query: 180 LFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D++ + N +E H+ +LR KL G + + R GY ++ Sbjct: 182 --DDSYDGLSNTLEVHVKELRHKL-EACGPRVIQTLRGRGYVLE 222 >gi|91785110|ref|YP_560316.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91689064|gb|ABE32264.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 266 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 17/169 (10%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA +S +P++ ++ S+ + D G DD + KP E+ ARV A+ RR Sbjct: 66 LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 124 Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A GP V GR V +V L RE +LE L+ G+ V+K Q Sbjct: 125 -----GAGGGPTVVRHGSLSFDQVGRIAYVNEQVIDLSARELGLLEVLLQRIGRLVSKEQ 179 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + E V N +E ++ +LRKK+ G + + R LGY ++ Sbjct: 180 LVDHLCE-WGEEVSNNAIEVYVHRLRKKIEPS-GVRII-TVRGLGYCLE 225 >gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 989 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 74/144 (51%), Gaps = 3/144 (2%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + L R IR+++ Q+P++ ++ S D+G DD + KP E++AR+ A+ RR Sbjct: 60 ISLCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRRP 119 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V++ E+G +R+ + + PL +E +LE + N + + I ++ Sbjct: 120 AVTSPPVLESGKLRLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHLW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLR 202 +++ +E V +HI LR+KL+ Sbjct: 180 S-YEDTPQEEAVRTHIKGLRQKLK 202 >gi|125974039|ref|YP_001037949.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|281418193|ref|ZP_06249213.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125714264|gb|ABN52756.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|281409595|gb|EFB39853.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] Length = 224 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 7/159 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122 IR S VP+I +S S + + G DD V KP +LA++ A+ RR + Sbjct: 67 IRDISNVPVIFLSSRDSNMDIVMAVNMGGDDYVTKPFSMDVLLAKMQALIRRAYSYGQFD 126 Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 E G I +DG G+ L + E +IL+ LM N+GK V++ +I ++ Sbjct: 127 GQIIECNGAILNTNDGT-LTYNGKNIELTKNEFKILQLLMRNKGKIVSRDKIMRVLWE-S 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + EN + ++++LR KL + D + +K+ GY I Sbjct: 185 EYFISENTLTVNVNRLRSKLEDIGLKDLIVTKKSQGYMI 223 >gi|332298252|ref|YP_004440174.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] gi|332181355|gb|AEE17043.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] Length = 244 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 76/177 (42%), Gaps = 27/177 (15%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------- 118 A + VP++ ++ + + D G DD + KP E+LAR+ A+ RR Sbjct: 69 AKNNVPVLLLTAKDEIADKVSGLDHGADDYMTKPFSTDELLARIRALTRRRGEVITGCLE 128 Query: 119 ------------LKVSNNRAETGPIRVFSDGRDPEVQ---GEVFPLPRRERRILEYLMAN 163 L R+ R D RD + Q G L +E RI+E L+ N Sbjct: 129 YGDLALDPKTCELCTDARRSGIDARRSGIDARD-DCQIPSGGKIKLSLKEYRIMEMLVQN 187 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + K +I ++G D E N +E IS LRKK+R + + R +GYS+ Sbjct: 188 PNQILTKERILEKVWG-GDSDAEYNNLEVFISFLRKKMRFIGSKAEIKTSRGIGYSL 243 >gi|253989244|ref|YP_003040600.1| DNA-binding transcriptional regulator BaeR [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780694|emb|CAQ83856.1| transcriptional regulatory protein baer [Photorhabdus asymbiotica] Length = 234 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 1/149 (0%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L + R IR S +P+I ++ L + G DD + KP REI+ARV Sbjct: 59 LMLPGCDGLSVCREIRCFSDIPIIMVTAKTEEIDRLLGLEIGADDYICKPYSPREIVARV 118 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 I RR + + +++ + ++ L E R+L+ + G+ +++ Q Sbjct: 119 KTILRRCYRPQDIVKQSDLQIDEACFQARYRDKILDLTPVEFRLLKTMAIRPGRVLSRDQ 178 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 + + +Y V + ++SHI LR+KL Sbjct: 179 LLNNLYD-DHRIVTDRTIDSHIKNLRRKL 206 >gi|228919505|ref|ZP_04082869.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840148|gb|EEM85425.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 225 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S +P+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 62 ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR--- 118 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N + + D V E L E +L + + + + Q+ I+G Sbjct: 119 TNEHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K+ F P+D K G W Sbjct: 179 L-NTNTEDRTVDSHIRNLRDKLR-KVNF-PIDHHLKTVYGVGYRW 220 >gi|229156833|ref|ZP_04284920.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228626753|gb|EEK83493.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 225 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 69 IRKYHDIPVILLTAKDQLVDKERGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|229160173|ref|ZP_04288173.1| Two-component response regulator [Bacillus cereus R309803] gi|228623307|gb|EEK80133.1| Two-component response regulator [Bacillus cereus R309803] Length = 234 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 21/230 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 7 LLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTGQHNYDLILLDVML--PGQSGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ IIR + P+ +S S + F G DD + KP + E++AR+ A RR + Sbjct: 65 DICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARIKAQLRR-HM 123 Query: 122 SNNRAETGPIRVFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + S GR + V G V + ++L + N +K +I Sbjct: 124 KQTVSHESNVHSISFGRFEINQHSAELTVDGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 + ++G ++N V HI KLR+K+ DP + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQ----DPSKPEYIKTVRGLGY 229 >gi|289208144|ref|YP_003460210.1| PhoB family transcriptional regulator [Thioalkalivibrio sp. K90mix] gi|288943775|gb|ADC71474.1| two component transcriptional regulator PhoB, winged helix family [Thioalkalivibrio sp. K90mix] Length = 229 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 3/131 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGP 130 +P+I ++ + + D G DD V KP RE++AR+ A+ RR S E Sbjct: 77 IPIIMLTARGEEEDRVRGLDVGTDDYVTKPFSPRELVARIKAVLRRTAPITSEEPVEVEG 136 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 +R+ GE + E +L + M ++ + + Q+ ++G + VEE V Sbjct: 137 LRLDPVSHRVSGHGEALSMGPTEYNLLHFFMTHQDRVFTRGQLLDQVWGT-NVYVEERTV 195 Query: 191 ESHISKLRKKL 201 + HI +LRK L Sbjct: 196 DVHIRRLRKAL 206 >gi|169828806|ref|YP_001698964.1| sensory transduction protein [Lysinibacillus sphaericus C3-41] gi|168993294|gb|ACA40834.1| Sensory transduction protein [Lysinibacillus sphaericus C3-41] Length = 224 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/155 (23%), Positives = 75/155 (48%), Gaps = 3/155 (1%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 RA++++PL+ ++ + F+ G DD + KP E+ RV A+ +R ++ ++ Sbjct: 69 RANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYRIGYSQTI 128 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + G I + + LP +E +L L G+ + Q+ I+G+ D A + Sbjct: 129 QLGAITLDRQTFKIMTGTDAITLPLKEFELLYKLAETPGQVYTREQLIDQIWGI-DYAGD 187 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ HI +LR++ F +++ R LGY ++ Sbjct: 188 NRTIDVHIKRLRERFALIADFH-IETIRGLGYRLE 221 >gi|154250109|ref|YP_001410934.1| two component transcriptional regulator [Fervidobacterium nodosum Rt17-B1] gi|154154045|gb|ABS61277.1| two component transcriptional regulator, winged helix family [Fervidobacterium nodosum Rt17-B1] Length = 229 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 18/157 (11%) Query: 70 HSQVPLIGISDYPSLQTTLDFF---DSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 ++ P IGI + T +D + G DD V KP + RE++ARV A RR K Sbjct: 67 KNEFPDIGIIVISAKSTDIDKILGIELGADDYVGKPFNPREVVARVKAYLRRTKGIKEVI 126 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAI----YGLF 181 G + ++ G+ L +E IL+ L+A R RV ++ +I I Y +F Sbjct: 127 RYGKLEIYPSDYVVLYDGQKIDLTAKEFEILK-LLAQRPDRVYSREEILETIWTDEYDVF 185 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D VV+ HI+ LRK KLG D + + R +GY Sbjct: 186 D-----RVVDVHINSLRK----KLGKDWIITVRGVGY 213 >gi|52142292|ref|YP_084536.1| response regulator [Bacillus cereus E33L] gi|51975761|gb|AAU17311.1| response regulator [Bacillus cereus E33L] Length = 225 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ S + Sbjct: 69 IRKYHDIPVILLTAKDQLVDKERGFISGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 129 ITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 188 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|114320264|ref|YP_741947.1| two component transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114226658|gb|ABI56457.1| two component transcriptional regulator, winged helix family [Alkalilimnicola ehrlichii MLHE-1] Length = 229 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 9/151 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 VPLI ++ + + + G DD V KP RE++AR+ A+ RR + A P+ Sbjct: 77 VPLIMLTARGEEEDKVRGLEVGADDYVTKPFSPRELIARIRAVLRR---TTPDAGDQPVE 133 Query: 133 VFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 V DP G + E R+L + M ++ + + Q+ ++G + VEE Sbjct: 134 VEGLTLDPVSHRVSGNGRTLDMGPTEFRLLHFFMTHQERVYTRGQLLDNVWGT-NVYVEE 192 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ HI +LRK L V + R GY Sbjct: 193 RTVDVHIRRLRKVLAESGHDHLVQTVRGTGY 223 >gi|260170315|ref|ZP_05756727.1| two-component system response regulator [Bacteroides sp. D2] gi|298481287|ref|ZP_06999480.1| DNA-binding response regulator [Bacteroides sp. D22] gi|315918677|ref|ZP_07914917.1| two-component system response regulator [Bacteroides sp. D2] gi|298272491|gb|EFI14059.1| DNA-binding response regulator [Bacteroides sp. D22] gi|313692552|gb|EFS29387.1| two-component system response regulator [Bacteroides sp. D2] Length = 228 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 12/165 (7%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + IR + +P++ ++ S LD FD+G DD + KP RE+ AR+ + +R Sbjct: 62 ELAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR-- 119 Query: 121 VSNNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V+ N E V++D R D E L +E +L Y++ N + +++ +I Sbjct: 120 VAGNAQELPQELVYADLRIDLQRKDVERNSISIKLSPKEYNLLLYMVENAERVLSRVEIA 179 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ FD N ++ +I+ LRKK+ + +K +G+ Sbjct: 180 EKVWNTHFDTGT--NFIDVYINYLRKKIDRDFEPKLIHTKAGMGF 222 >gi|228961124|ref|ZP_04122750.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798567|gb|EEM45554.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pakistani str. T13001] Length = 232 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +RA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQVRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172 KV+ N++ E G + + + R V GE L +E IL YL+A+ K+V + Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDIL-YLLASHPKKVYNVEN 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 IF ++ D+ E N V HI LRKKL Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210 >gi|228954723|ref|ZP_04116745.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229071949|ref|ZP_04205159.1| Two-component response regulator [Bacillus cereus F65185] gi|229081705|ref|ZP_04214198.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228701550|gb|EEL54043.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228711108|gb|EEL63073.1| Two-component response regulator [Bacillus cereus F65185] gi|228804921|gb|EEM51518.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 248 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 78 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 137 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 138 SAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLEA-- 195 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 196 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 238 >gi|229169264|ref|ZP_04296976.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH621] gi|228614205|gb|EEK71318.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH621] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 LE+ RIIR S VP++ +S + G DD + KP E+ ARV A I R Sbjct: 62 LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K S I++ DP E G+ L +E IL+ + N+ + K QI+ Sbjct: 122 KYSATETTEKRIQIGDLTIDPINFTVEKNGKHLKLTLKEFEILKLFLKNQNRVFTKAQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++ + ++NV+ H+ +LR+K+ + Sbjct: 182 TLVWN-EEYYGDDNVINVHMRRLREKIES 209 >gi|221315596|ref|ZP_03597401.1| hypothetical protein BsubsN3_17947 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320512|ref|ZP_03601806.1| hypothetical protein BsubsJ_17915 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324796|ref|ZP_03606090.1| hypothetical protein BsubsS_18066 [Bacillus subtilis subsp. subtilis str. SMY] Length = 293 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 7/168 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-- 114 G E +IR +S P+ ++ S L F G DD + KP + E+ AR+ A Sbjct: 116 GMSGFEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHL 175 Query: 115 --IYRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 Y+ + S+N+ T FS + V GE + ++L+Y + ++K Sbjct: 176 KRTYQSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKD 235 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218 QI+ ++G + + N V HI KLR+K+ R+ + + + R LGY Sbjct: 236 QIYEKVWG-YPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGY 282 >gi|221632648|ref|YP_002521869.1| KDP operon transcriptional regulatory protein kdpE [Thermomicrobium roseum DSM 5159] gi|221156381|gb|ACM05508.1| KDP operon transcriptional regulatory protein kdpE [Thermomicrobium roseum DSM 5159] Length = 234 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 20/153 (13%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IR S VP+I +S + + F+ G DD V KP + E++AR+ A+ RR Sbjct: 64 ELLQDIRLRSAVPVIIVSARAAPDDRIRGFELGADDFVAKPFYLDELVARIEAVLRRTSP 123 Query: 122 SNNRA----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + +R+ + RVF DG+ EV+ L R E +LE L G+ V + Sbjct: 124 TVDRSPLLQYDRVTIDLANRRVFVDGQ--EVR-----LSRTEWSLLEQLARQPGRVVRHS 176 Query: 172 QIFSAIYGLFDEAVEEN-VVESHISKLRKKLRN 203 ++ S ++G E + E + + +S+LR KLR+ Sbjct: 177 ELLSHVWG--PEFIRETYYLRTWVSRLRAKLRD 207 >gi|199597921|ref|ZP_03211346.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258507247|ref|YP_003169998.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258538434|ref|YP_003172933.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|199591178|gb|EDY99259.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257147174|emb|CAR86147.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257150110|emb|CAR89082.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|259648613|dbj|BAI40775.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 228 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124 +R SQ+P+I +S + + +G DD V KP + E++ARV ++ RR + V+N+ Sbjct: 67 VRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQNEVTNS 126 Query: 125 RA---ETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYG 179 E GP+ + D + + G+ L E IL YL+A+ RV + +IF ++ Sbjct: 127 EPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGIL-YLLASHPNRVFSADEIFERVWQ 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + V V H+S LR K+ G +++ +GY ++ Sbjct: 186 Q-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227 >gi|157164687|ref|YP_001466781.1| extracellular solute-binding protein [Campylobacter concisus 13826] gi|112800153|gb|EAT97497.1| DNA-binding response regulator [Campylobacter concisus 13826] Length = 220 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 17/145 (11%) Query: 83 SLQTTLDF---FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD--- 136 SL T D + SG DD + KP +E+L R+ A+ +R S+ E I++ D Sbjct: 81 SLNTIDDLEKGYKSGCDDYLKKPFELKELLIRMQALIKR-NFSHQNGE--DIKILDDLCF 137 Query: 137 ---GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 + GE + +E +L + N+GK + K +IF+ I+ FDE E + + Sbjct: 138 HPQSKTLSKNGENVNISSKESDLLALFLQNKGKILTKDEIFNKIWK-FDEEPSELSLRVY 196 Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGY 218 I K LR LG D + +KR GY Sbjct: 197 I----KNLRQILGKDAILNKRGDGY 217 >gi|126700252|ref|YP_001089149.1| two-component response regulator [Clostridium difficile 630] gi|254976231|ref|ZP_05272703.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255093618|ref|ZP_05323096.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255101806|ref|ZP_05330783.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255307673|ref|ZP_05351844.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|255315366|ref|ZP_05356949.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518031|ref|ZP_05385707.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255651147|ref|ZP_05398049.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|255656615|ref|ZP_05402024.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|260684213|ref|YP_003215498.1| two-component response regulator [Clostridium difficile CD196] gi|260687872|ref|YP_003219006.1| two-component response regulator [Clostridium difficile R20291] gi|296449929|ref|ZP_06891693.1| response regulator [Clostridium difficile NAP08] gi|296878311|ref|ZP_06902319.1| response regulator [Clostridium difficile NAP07] gi|306520997|ref|ZP_07407344.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|115251689|emb|CAJ69524.1| Two-component response regulator [Clostridium difficile] gi|260210376|emb|CBA64753.1| two-component response regulator [Clostridium difficile CD196] gi|260213889|emb|CBE05918.1| two-component response regulator [Clostridium difficile R20291] gi|296261199|gb|EFH08030.1| response regulator [Clostridium difficile NAP08] gi|296430609|gb|EFH16448.1| response regulator [Clostridium difficile NAP07] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 88/170 (51%), Gaps = 10/170 (5%) Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R IR+ +P+I ++ ++ + G DD + KP +E+LAR++++ R Sbjct: 62 IEVLRKIRSDKDLKNIPVIMLTAKNMENDKVEGLEIGADDYITKPFSIKELLARISSVLR 121 Query: 118 RLKVS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R ++ NN TG +++ + E L +E +L+ L+ N+GK +++ Sbjct: 122 RYNLTSLGEENNILTTGNLKLDLSKHEVTKGSEKIELTLKEFELLKLLIQNKGKVLSRNY 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 + I+G ++ E V+ HI LRKK+ ++ + +++ R +GY ID Sbjct: 182 LLDKIWG-YEYYGETRTVDVHIRYLRKKIEDEDKSEKYIETIRGVGYKID 230 >gi|6689205|emb|CAB65399.1| VicR protein [Staphylococcus aureus] Length = 239 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 34/220 (15%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 D Y A G+D V L +EE D+ ++ L G+ +E+ R +R + Sbjct: 34 DVYCAYDGNDAVDLI------YEE------EPDIVLLDIMLPGRDG--MEVCREVRKKYE 79 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--- 129 +P+I ++ S + + G DD V KP RE++ARV A RR S +TG Sbjct: 80 MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR-HYSQPAQDTGNVT 138 Query: 130 ------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 I ++ D + +GE L RE + YL + G+ + + + ++G +D Sbjct: 139 NEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWG-YDY 197 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 + V+ I +LR+K+ + DP + ++R +GY Sbjct: 198 FGDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 233 >gi|330875757|gb|EGH09906.1| DNA-binding response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965575|gb|EGH65835.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 222 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/227 (23%), Positives = 103/227 (45%), Gaps = 24/227 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D +A G G +++ + +S D+ ++ L G L Sbjct: 3 LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGL--PGMPGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 E+ + R + P++ ++ S ++ +G DD + KP H E+ R+ A+ RR Sbjct: 61 EVLQQWRGNGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L+ + + G V DG D ++ F R+L Y M + G+ ++K+ Sbjct: 121 GMANQPTLESAGLNLDEGRQCVSRDGADIQLTSAEF-------RLLRYFMLHPGQILSKS 173 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +Y +E + NV+E H++ LR+ KLG ++++R GY Sbjct: 174 HLSEHLYDGENER-DSNVIEVHVNHLRR----KLGRAVIETRRGQGY 215 >gi|325068515|ref|ZP_08127188.1| winged helix family two component transcriptional regulator [Actinomyces oris K20] Length = 219 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 9/150 (6%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV 133 P+I ++ S+ + + G DD + KP E+LAR+ R + ++ + Sbjct: 75 PVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDATAPDQMRLTHRDM 134 Query: 134 FSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVV 190 D R ++G L RE + E M + G+ +++ Q+ S+++GL FD NVV Sbjct: 135 VLDLRARTLMLEGRTVELSAREFALAETFMRHPGQVLSREQLLSSVWGLDFDPG--SNVV 192 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++S LRNKLG V++ R +GY + Sbjct: 193 EVYVS----YLRNKLGRQRVETVRGMGYRL 218 >gi|313683188|ref|YP_004060926.1| two component transcriptional regulator, winged helix family [Sulfuricurvum kujiense DSM 16994] gi|313156048|gb|ADR34726.1| two component transcriptional regulator, winged helix family [Sulfuricurvum kujiense DSM 16994] Length = 220 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 4/149 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPI 131 P++ S ++ ++ D G DD + KP + E+LAR+ A+ RR + G + Sbjct: 73 TPVLLFSSKKEIEDKVEALDGGADDYLEKPFSNIELLARIRALLRRESTQKQTHLKLGKL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 V R ++ L +E +LE+L+ N + + QI + FD+ N+V+ Sbjct: 133 SVDFSSRSVQIDNTPVKLSAKEFELLEFLLLNANTVLTRYQISEHLSRDFDQIATSNIVD 192 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +HI LRKKL D + + R +GY I Sbjct: 193 AHIKNLRKKLD---ADDLIQTVRGVGYMI 218 >gi|300694173|ref|YP_003750146.1| transcriptional regulatory protein, probable baer protein, response regulator for mdtABCd and acrd [Ralstonia solanacearum PSI07] gi|299076210|emb|CBJ35523.1| Transcriptional regulatory protein, probable baeR protein, response regulator for mdtABCD and acrD [Ralstonia solanacearum PSI07] Length = 222 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 84/170 (49%), Gaps = 3/170 (1%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G+ LE+ R +RA S +P++ ++ L + G DD + KP RE++AR+ Sbjct: 54 LMLPGKDGLEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARI 113 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 I RR++ + ++ +++ + ++G+ L E R+L L G+ +++ Sbjct: 114 KTILRRVQRGGAQPDS-LLQIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRAN 172 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + IY V + V++H+ LR+K+ G + + S +GY +D Sbjct: 173 LLEQIYD-DHRIVTDRTVDTHVKNLRRKMELVSPGTELIHSVYGVGYRLD 221 >gi|290955975|ref|YP_003487157.1| two component system transcriptional regulator PhoP [Streptomyces scabiei 87.22] gi|260645501|emb|CBG68589.1| putative POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Streptomyces scabiei 87.22] Length = 247 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 12/164 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R+ A + P++ ++ + G DD V+KP E+L R+ AI RR + Sbjct: 76 RLRAAGDECPILFLTARTGTDDRIQGLSVGGDDYVSKPFSIEEVLLRIEAILRRTAPVDA 135 Query: 125 RAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++D + G+ L E ++L YL++N G+ V+K QI ++ Sbjct: 136 ALPPPSVLRYADLELDEGAHEVHRAGQYIALSPTEFKLLAYLLSNAGQVVSKVQILDHVW 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 +D A + ++E+++ LR+K+ F+P + + R +GY + Sbjct: 196 S-YDFAGDARIIETYVRYLRRKIDC---FEPPLIQTVRGVGYCL 235 >gi|229514729|ref|ZP_04404190.1| transcriptional regulator [Vibrio cholerae TMA 21] gi|229348709|gb|EEO13667.1| transcriptional regulator [Vibrio cholerae TMA 21] Length = 224 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 18/170 (10%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L L + IRA +QV ++ +S ++ + +G DD + KP H E+LAR+ A+ RR Sbjct: 60 LALCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRN 119 Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 L+ ++ +RV+ + E L +E ILE + G ++ Sbjct: 120 IQTHTCNKLRFADLELCLSTMRVYRADQPIE-------LTAKEISILELFLRKPGHIFSR 172 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +I + ++G+ + + N+V+ ++ +LRKK+ + +KR +GY + Sbjct: 173 ERILANVWGIHQDPL-TNIVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221 >gi|228910275|ref|ZP_04074092.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228849335|gb|EEM94172.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 252 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 82 RQIRTISNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 141 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 142 SAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLEA-- 199 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 200 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 242 >gi|167565733|ref|ZP_02358649.1| DNA-binding response regulator IrlR [Burkholderia oklahomensis EO147] gi|167572829|ref|ZP_02365703.1| DNA-binding response regulator IrlR [Burkholderia oklahomensis C6786] Length = 227 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/221 (26%), Positives = 104/221 (47%), Gaps = 25/221 (11%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66 + L + G+IA + +DGV+ G + E E++ D+ ++ L G G VLE Sbjct: 18 KGLTEAGFIADWVEDGVT--GLHQAETEDY-------DLIILDVMLPGHDGWTVLER--- 65 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R P++ ++ + + + G DD V KP E++ARV +I RR Sbjct: 66 LRRERSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRR----GQAR 121 Query: 127 ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 E+ +RV R QG+V L +E +L LM G+ + + I S ++ + Sbjct: 122 ESSILRVADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDMN 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F+ + NVV++ I +LR K+ + + + R +GY ++ Sbjct: 182 FNS--DTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220 >gi|115360988|ref|YP_778125.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115286316|gb|ABI91791.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 245 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 13/139 (9%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGE 145 ++G DD ++KP E+ ARV A+ RR V+ N PIR DP +++G Sbjct: 92 LEAGADDYLSKPFRAEELAARVNALLRR--VARNVKRDEPIRAGEYLLDPVHRAVKLRGN 149 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 L +E +++ L N GK +++ Q+ + +G + E +++HI ++R+KL KL Sbjct: 150 TIELTTKEFQLVACLFNNIGKIMSREQLATTAWG-RELGTESRSLDTHIYRIRQKL--KL 206 Query: 206 GFDP---VDSKRFLGYSID 221 G + + + LGY +D Sbjct: 207 GIENGLRLSAIYTLGYRLD 225 >gi|229118027|ref|ZP_04247387.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock1-3] gi|228665476|gb|EEL20958.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock1-3] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 7/149 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 LE+ RIIR S VP++ +S + G DD + KP E+ ARV A I R Sbjct: 62 LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K S I++ DP E G L +E IL+ + N+ + K QI+ Sbjct: 122 KYSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++ + ++NV+ H+ +LR+K+ + Sbjct: 182 TLVWN-EEYYGDDNVINVHMRRLREKIES 209 >gi|160880125|ref|YP_001559093.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428791|gb|ABX42354.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 240 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 11/166 (6%) Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E+ E+ + IR S VP++ IS + F G DD + KP +E+ R+ AI R Sbjct: 65 EEGYEVCKKIRKSSNVPILFISAKTEEIDRVLGFALGGDDYITKPFSPKEVAYRIKAILR 124 Query: 118 RLKVSNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R + GP ++ + + GE+ L +E ++ YL + + ++K Sbjct: 125 RSSYHDEEENKSTILNLGPFQIDEEKIEVRKNGELIELKPKEYKMFLYLAKHPNQIMSKE 184 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217 ++ S ++G D +N + HI KLR+K+ DP + K L Sbjct: 185 KLCSEVWGE-DYIGFDNTIMVHIRKLREKIEK----DPSNPKHILN 225 >gi|225155322|ref|ZP_03723815.1| response regulator receiver protein [Opitutaceae bacterium TAV2] gi|224803929|gb|EEG22159.1| response regulator receiver protein [Opitutaceae bacterium TAV2] Length = 242 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 20/173 (11%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNR 125 IR S VP++ ++ + + + G DD V KP RE+ ARV AI RR V+N Sbjct: 68 IRRCSSVPILFLTARNNEIDRVVGLEMGGDDYVAKPFSPREVAARVRAILRRGPAVTNAN 127 Query: 126 AETGPIRVFSDGRDPEVQGEVFP----------------LPRRERRILEYLMANRGKRVA 169 A+ G + P G+ F L R E R+ + L++ G+ + Sbjct: 128 ADAGVTVNTNASAKPHDNGQRFTVDDTRFQIRFLDTPLDLTRIEFRLFKVLLSQPGRVFS 187 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDP-VDSKRFLGYSI 220 + Q+ +A + EA + V++H+ +R KLR DP + + R LGYS+ Sbjct: 188 REQLLTAAWDE-PEASLDRTVDAHVKTIRAKLRAVTNEADPIIQTHRGLGYSL 239 >gi|126650762|ref|ZP_01722978.1| sensor histidine kinase [Bacillus sp. B14905] gi|126592427|gb|EAZ86445.1| sensor histidine kinase [Bacillus sp. B14905] Length = 713 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 11/185 (5%) Query: 35 EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94 +E L+ + D I ++ G E+ + IRA + +P++ +S + G Sbjct: 520 DEGLKQALHGDYDLIILDIMLPGMNGFEICKQIRAVNNIPILFVSAKKEDIDKIRGLGLG 579 Query: 95 VDDVVNKPIHHREILARVAAI---YRRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFP 148 DD + KP E++ARV A Y RL K +NN I + + R V GE Sbjct: 580 ADDYITKPFSPSELVARVKAHLSRYERLASNKPTNNMLSIHGITIDTSARKVFVNGEEVA 639 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 +E +L + + + + ++K Q++ +G ++ A + + V HI KLR+K+ D Sbjct: 640 FTTKEFDLLVFFVKHPNQVLSKEQLYERNWG-YESAADVSTVTVHIRKLREKIER----D 694 Query: 209 PVDSK 213 P K Sbjct: 695 PAQPK 699 >gi|114706873|ref|ZP_01439773.1| two-component transcriptional regulator, winged helix family protein [Fulvimarina pelagi HTCC2506] gi|114537821|gb|EAU40945.1| two-component transcriptional regulator, winged helix family protein [Fulvimarina pelagi HTCC2506] Length = 225 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 98/214 (45%), Gaps = 15/214 (7%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 +AL + G++A DG + G N E ++ D+ ++ L K + + + + Sbjct: 18 KALKEAGHVADHAGDGET--GLNMAEGRDY-------DLLIVDRML-PKRDGLSVIADLR 67 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN--NR 125 ++ + P + +S + ++ +G DD + KP E+LAR + RR Sbjct: 68 KSGTHTPALILSALGQVDDRVEGLKAGGDDYLTKPYAMSELLARAEVLGRRRATGEVETS 127 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEA 184 + G + + + G+ L RE R+LEYLM + G+ V +T + ++ FD Sbjct: 128 YQVGDLELDRLSHEVRRAGKPIILQPREFRLLEYLMKHAGQVVTRTMLLENVWDYHFDP- 186 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + NV++ HIS+LR K+ + + + R GY Sbjct: 187 -QTNVIDVHISRLRSKIEREFDGPLLHTVRGSGY 219 >gi|148652012|ref|YP_001279105.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148571096|gb|ABQ93155.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 238 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 10/164 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G L + R +R H P++ ++ + + G DD V KP R +LAR+ A+ Sbjct: 65 GSDGLTVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALL 124 Query: 117 RRLKVSNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR + + + R E G + + + GR + GE+ E +L L +N G+ +++ Sbjct: 125 RRSENAPSEEIPQRLEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSRE 184 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 IF + G+ + ++ ++ IS++R K+G DP + KR Sbjct: 185 DIFERLRGIEYDG-QDRSIDVRISRIRP----KIGDDPENPKRI 223 >gi|254227862|ref|ZP_04921292.1| transcriptional regulatory protein CpxR [Vibrio sp. Ex25] gi|262396149|ref|YP_003288002.1| probable transcriptional regulator SyrB [Vibrio sp. Ex25] gi|151939358|gb|EDN58186.1| transcriptional regulatory protein CpxR [Vibrio sp. Ex25] gi|262339743|gb|ACY53537.1| probable transcriptional regulator SyrB [Vibrio sp. Ex25] Length = 221 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 9/161 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ R I P++ ++ + LD + +G D + KP + E+L R+ AI RR+ Sbjct: 61 MQVARRICQRFATPILMLTALNDENSMLDGYQAGADQYIGKPFNVAELLMRIKAILRRVG 120 Query: 121 VSNNRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R ++ SD Q PL E +L YL+ N+G ++K ++ + + Sbjct: 121 LERQRQTMCSTVQTISD------QLNSLPLTSTEAELLSYLVKNQGVVISKAELQTEVLK 174 Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219 + N ++ HIS +R+KL L + + R GYS Sbjct: 175 KELSPFDRN-LDMHISNIRRKLVEAGLSKQHIKTFRGKGYS 214 >gi|77458928|ref|YP_348434.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382931|gb|ABA74444.1| putative two-component response regulator Winged helix family [Pseudomonas fluorescens Pf0-1] Length = 241 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/173 (25%), Positives = 84/173 (48%), Gaps = 16/173 (9%) Query: 40 SSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 + AR D ++ L G+G L L + +RA +P+I ++ L + + G DD + Sbjct: 47 AQARPDTIILDLMLPGEGG--LSLCQKVRAQMGIPIIMLTAMAELSDRIVGLELGADDYL 104 Query: 100 NKPIHHREILARVAAIYRRL--KVSNNRAETGPIRVFS---------DGRDPEVQGEVFP 148 KP +E+LARV A+ RR+ + + P+ F+ + R PE G + P Sbjct: 105 TKPFAPQELLARVRALQRRVGENAPSGAEPSRPVMAFAGWHLDITCRELRSPE--GVMIP 162 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + E +L L+ + + + + Q+ +G +A + + ++ IS+LR+K+ Sbjct: 163 MSAGEFDLLLVLLEHPQRILTREQLIDLTHGQGHDAYDRS-IDVQISRLRRKI 214 >gi|300689749|ref|YP_003750744.1| transcriptional regulatory protein [Ralstonia solanacearum PSI07] gi|299076809|emb|CBJ49419.1| Transcriptional regulatory protein [Ralstonia solanacearum PSI07] Length = 221 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 87/187 (46%), Gaps = 26/187 (13%) Query: 45 DVSAIEAFLIGK-GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 DV ++ L G+ G VL R +RA VP++ ++ ++ + D G DD V KP Sbjct: 46 DVLLLDLGLPGQDGHAVL---RTLRARGNPVPVLILTARDAVGERVRGLDGGADDYVLKP 102 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG---RDPEVQ------GEVFPLPRRE 153 E+LAR+ A+ RR P V S+G DP GE L RE Sbjct: 103 FEMVELLARMRAVLRR-----RGGAASP--VLSNGVLSLDPATHEVRAGDGEPVRLSGRE 155 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +L+ LM G ++++++ IYG E V N VE I LRK KLG D + + Sbjct: 156 FALLQALMLRPGAILSRSELEERIYGWGHE-VASNAVEFLIHALRK----KLGADSIKNV 210 Query: 214 RFLGYSI 220 R +G+ + Sbjct: 211 RGVGWMV 217 >gi|302381496|ref|YP_003817319.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192124|gb|ADK99695.1| two component transcriptional regulator, winged helix family [Brevundimonas subvibrioides ATCC 15264] Length = 228 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 76/148 (51%), Gaps = 4/148 (2%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E R++R P+I ++ S T+ DSG +D V KP +LAR+ A R + Sbjct: 66 EACRLLRKDGVSTPVIMLTAQDSDADTVLGLDSGANDYVTKPFRFAVLLARIRAHLRSHE 125 Query: 121 VSNNRA-ETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + + GP G+ + +G+ L +E IL+YL + K V++ ++ + ++ Sbjct: 126 QSEDAVFQIGPYEFRPAGKVLLDAKGKKVRLTEKETNILKYLYRSGTKAVSREELLTEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG 206 G ++ V + +E+HI +LR+K+ + G Sbjct: 186 G-YNAGVTTHTLETHIYRLRQKIEPEPG 212 >gi|229158472|ref|ZP_04286533.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 4342] gi|228624991|gb|EEK81757.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 4342] Length = 232 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 13/150 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172 KV +N++ E G + + + R V GE L +E IL YL+A+ K+V + Sbjct: 124 LNQPKVVDNKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDIL-YLLASHPKKVYNVEN 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 IF ++ D+ E N V HI LRKKL Sbjct: 183 IFQQVWA--DDYYEGGNTVMVHIRTLRKKL 210 >gi|167746479|ref|ZP_02418606.1| hypothetical protein ANACAC_01189 [Anaerostipes caccae DSM 14662] gi|167653439|gb|EDR97568.1| hypothetical protein ANACAC_01189 [Anaerostipes caccae DSM 14662] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/141 (24%), Positives = 70/141 (49%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ R IR S V + ++ + +++G DD V KP +++++ A++ R+ Sbjct: 63 LDFCREIRRISNVRFMFLTAMDQEIDIVMGYEAGADDYVVKPFSLAVLISKIHAVFARMD 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V + E+G + V V GE L + E ++L +++ + +K Q+ ++ + Sbjct: 123 VKEEKIESGKVCVHKTEMKVMVSGEERSLTKNEWKLLLLFISHPRQVFSKGQLLEQMFDM 182 Query: 181 FDEAVEENVVESHISKLRKKL 201 E +EN V +I +LR+K+ Sbjct: 183 DGEFADENTVAVNIRRLREKI 203 >gi|148555862|ref|YP_001263444.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148501052|gb|ABQ69306.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 226 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L RI + +P+I +S ++ D+G DD V KP+ E+ AR+ AI R + Sbjct: 65 LQRIRQDGMGLPVIILSALGRPVEKVEGLDAGADDYVVKPVTAAELNARLNAILRGRRQP 124 Query: 123 NNRAET---GPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +T G I V F RD G+ L + E +L L+ N V + + Sbjct: 125 AQDGDTLRAGDIVVSPARFRAWRD----GKAVDLSKIEFNLLLELVRNVDSIVTRAMLLE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G +D N+V+ HI +LR KL G DP+ + R +GY Sbjct: 181 KVWG-YDFEPATNLVDVHIRRLRAKLTANGGGDPISTVRGVGY 222 >gi|118443383|ref|YP_877594.1| two-component response regulator [Clostridium novyi NT] gi|118133839|gb|ABK60883.1| two-component response regulator [Clostridium novyi NT] Length = 222 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 72/144 (50%), Gaps = 4/144 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SN 123 IR +S+VP+I ++ + L ++ G DD V KP + ++A+V A+ +R + Sbjct: 66 IRQNSKVPIIMLTAKSEEEDKLLGYELGCDDYVTKPFSPKVLVAKVKALLKRSGIEEKET 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 N + + + ++ GE+ L +E +L + + N +++ I ++G FD Sbjct: 126 NIKNYNGLYINKLSNEVKIHGEIVNLSPKEYDLLIFFVNNIDIVLSRDTILDKVWG-FDY 184 Query: 184 AVEENVVESHISKLRKKLRNKLGF 207 V++H+ +LR+KL+ K + Sbjct: 185 DGGLRTVDTHVKRLREKLKEKSNY 208 >gi|53803482|ref|YP_114746.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath] gi|53757243|gb|AAU91534.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath] Length = 228 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 16/157 (10%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 + P++ ++ +L + D+G DD + KP E+LARV A+ RR +A + Sbjct: 72 RTPVLMLTARDALTDRVRGLDTGADDYLTKPFAFEELLARVRALLRR----AEQARPAML 127 Query: 132 RVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY--GLFDEA 184 V DP + G L +E ILE L+ G+ V++TQ+ I+ GL Sbjct: 128 SVADLVLDPRSRRVTRSGRPLSLTPKEYAILELLLRRAGEVVSRTQLAEEIWRTGLI--- 184 Query: 185 VEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +N+++ HIS LR+K+ + G P + + R G+S+ Sbjct: 185 ALDNLIDVHISNLRRKV-DPPGVPPLIRTVRGCGFSL 220 >gi|89893318|ref|YP_516805.1| hypothetical protein DSY0572 [Desulfitobacterium hafniense Y51] gi|89332766|dbj|BAE82361.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 148 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 12/138 (8%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNRAETGPIRVFSDGRDPEVQ 143 + G DD + KP + A++ AI RR +K+ +R G + +D Q Sbjct: 16 MNMGGDDFIAKPFDLNVLTAKIQAILRRTYHFAGQVKILEHR---GALLNTADA-SLTYQ 71 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 G+ L + + RIL+ LM N+G+ V++ + ++ D V+EN + ++++LRKKL Sbjct: 72 GQHIELTKNDYRILQALMENKGRVVSRDTLMQRLWET-DSFVDENTLTVNMTRLRKKLEA 130 Query: 204 KLGFDPVDSKRFLGYSID 221 D + +K+ LGY I+ Sbjct: 131 AGLKDFIITKKGLGYLIE 148 >gi|332976862|gb|EGK13686.1| DNA-binding response regulator [Psychrobacter sp. 1501(2011)] Length = 238 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 79/164 (48%), Gaps = 10/164 (6%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G L + R +R H P++ ++ + + G DD V KP R +LAR+ A+ Sbjct: 65 GSDGLTVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALL 124 Query: 117 RRLKVSNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR + + + R E G + + + GR + GE+ E +L L +N G+ +++ Sbjct: 125 RRSENAPSEEVPQRLEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSRE 184 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 IF + G+ + ++ ++ IS++R K+G DP + KR Sbjct: 185 DIFERLRGIEYDG-QDRSIDVRISRIRP----KIGDDPENPKRI 223 >gi|325695127|gb|EGD37029.1| DNA-binding response regulator [Streptococcus sanguinis SK150] Length = 234 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD + KP +E+LAR+ ++ RR+ + N + G + G + L Sbjct: 92 LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202 +E +++E+LM N K ++ +IF ++ DE ++E V +IS LR+KL+ Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWANDEDEDLDEGFVWIYISYLRQKLK 204 >gi|320333505|ref|YP_004170216.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754794|gb|ADV66551.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 226 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 8/184 (4%) Query: 41 SAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN 100 +AR D+ ++ L G+ L++ R +RA + +I ++ + + G DD V Sbjct: 44 AARPDLILLDLMLPGRSG--LDVLRSVRAEGRTGVILVTARAEETDQVVGLELGADDYVV 101 Query: 101 KPIHHREILARVAAIYRR----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI 156 KP RE++ARV A+ RR L+ + G + V + V G L E R+ Sbjct: 102 KPFRPREVMARVRAVLRRTQEALEPLSAPTRVGALEVDTRAVSVRVHGAPLSLTPAEFRL 161 Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 L +L + G+ + ++ L D E VV++H++ +R+KL + + R + Sbjct: 162 LAHLASAPGRAFTREELLEG--ALPDSDAMERVVDAHLTSVRRKLEANGAPGLLHTVRGV 219 Query: 217 GYSI 220 GY + Sbjct: 220 GYRL 223 >gi|299541871|ref|ZP_07052194.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298725609|gb|EFI66250.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 228 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 11/161 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S P+I ++ + L+ FD G DD + KP E++ARV A+ RR S + A Sbjct: 67 IRERSTCPVIMLTALGEVNYRLEGFDHGADDYIGKPFIADEVVARVRAVLRRAVGSPDSA 126 Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + G + + + GE L R+ +L +L + + + Q+ ++G E Sbjct: 127 TSKQYGSLVIDCKAHKVLLHGEEIVLTPRDLSVLMFLADHPNQTFTRDQLIDQVWGWEYE 186 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSK----RFLGYSI 220 + V+ I +LRK L+ +D + + R LGY + Sbjct: 187 G-SDRAVDLAIKRLRKALKE---WDEAEGEIKTLRGLGYQL 223 >gi|256848579|ref|ZP_05554020.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] gi|256714631|gb|EEU29611.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] Length = 244 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 88/169 (52%), Gaps = 10/169 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 +E+ + IR S +P++ +S + + +G DD V KP + E++ARV ++ RR Sbjct: 76 MEVIKRIRKDSSIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRSE 135 Query: 120 -KVSNNRAE---TGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173 +++N++ + GP+++ D + + + G++ L E IL YL+A+ RV + I Sbjct: 136 GQMTNDQPDILNVGPLQINKDSHEVKTINGDLIQLTALEFGIL-YLLASHPNRVFSADDI 194 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSID 221 F ++ + V V H+S LR K+ G + V ++ +GY ++ Sbjct: 195 FERVWQQ-ESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 242 >gi|237807645|ref|YP_002892085.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] gi|237499906|gb|ACQ92499.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] Length = 229 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 12/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R HS +P++ ++ + + G DD V+KP RE++ARV AI RR + Sbjct: 65 RRLRNHSNIPVLMLTAKGDDIDRIIGLELGADDYVSKPCTPRELVARVRAILRR--ADPD 122 Query: 125 RAETG---PIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E G P+RV + R+ + E+ L E +LE L G+ ++K + Sbjct: 123 KQEPGQLQPLRVGALTISAASRNATWRDELLDLTSTEFNLLEILCRRAGRIISKEDLSLH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 G A + ++ H+S LR+KL K G P+ + R +GY + Sbjct: 183 TLG-RPLARYDRSIDVHVSNLRQKLGVLKDGRSPIQTVRGIGYQL 226 >gi|190572650|ref|YP_001970495.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190010572|emb|CAQ44181.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 239 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 16/223 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D A + D GD+G + S + L+ D ++ L G G +V Sbjct: 7 LIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPGVDGLQV 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + + VP+I IS S + + G DD + KP E++ARV A+ RR + Sbjct: 67 CQRARAMARY--VPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124 Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A E G +++ R V G L RE +L + + + A+ ++ Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVDGNALELTPREFDLLLFFARHPDQVFARMEL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 + ++G + E+ V +HI++LR K+ DP + +R L Sbjct: 185 LNQVWG-YQHDGYEHTVNTHINRLRSKIEP----DPANPRRLL 222 >gi|153853359|ref|ZP_01994768.1| hypothetical protein DORLON_00757 [Dorea longicatena DSM 13814] gi|149754145|gb|EDM64076.1| hypothetical protein DORLON_00757 [Dorea longicatena DSM 13814] Length = 194 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 81/160 (50%), Gaps = 8/160 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I +S + + G D+ + KP + A+V A+ RR A Sbjct: 37 IRKISKVPIIFLSSANDNMNIVMAMNMGGDEFIEKPFDLNVVTAKVQAVLRRTYEFRGTA 96 Query: 127 ET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + G I +D Q + L + E +IL+ L+ N GK V++ I + ++ + Sbjct: 97 DVMEWNGAILNLADAT-VLYQDQKLELSKNEFKILQILLENTGKIVSRESIMTRLWD-SN 154 Query: 183 EAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 E +++N + ++++LRKK+ ++G + +K+ +GY ++ Sbjct: 155 EFIDDNTLTVNVARLRKKME-QIGLGGKIITKKGIGYMVE 193 >gi|125718593|ref|YP_001035726.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|125498510|gb|ABN45176.1| Two-component response transcriptional regulator (CheY-like receiver and winged-helix DNA-binding domains), putative [Streptococcus sanguinis SK36] Length = 234 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD + KP +E+LAR+ ++ RR+ + N + G + G + L Sbjct: 92 LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202 +E +++E+LM N K ++ +IF ++ DE ++E V +IS LR+KL+ Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWSKDEDEDLDEGFVWIYISYLRQKLK 204 >gi|15923008|ref|NP_370542.1| response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|15925723|ref|NP_373256.1| response regulator [Staphylococcus aureus subsp. aureus N315] gi|49482271|ref|YP_039495.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49484930|ref|YP_042151.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82749795|ref|YP_415536.1| two-component response regulator [Staphylococcus aureus RF122] gi|151220229|ref|YP_001331052.1| response regulator protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156978349|ref|YP_001440608.1| response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|161508284|ref|YP_001573943.1| response regulator VicR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253730418|ref|ZP_04864583.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733821|ref|ZP_04867986.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257424214|ref|ZP_05600643.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257426891|ref|ZP_05603293.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257429527|ref|ZP_05605914.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432174|ref|ZP_05608537.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257435135|ref|ZP_05611186.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257793556|ref|ZP_05642535.1| response regulator protein [Staphylococcus aureus A9781] gi|258411138|ref|ZP_05681417.1| two-component system response regulator [Staphylococcus aureus A9763] gi|258420958|ref|ZP_05683892.1| response regulator protein [Staphylococcus aureus A9719] gi|258423220|ref|ZP_05686112.1| response regulator VicR [Staphylococcus aureus A9635] gi|258438597|ref|ZP_05689820.1| response regulator VicR [Staphylococcus aureus A9299] gi|258443947|ref|ZP_05692285.1| response regulator protein [Staphylococcus aureus A8115] gi|258446237|ref|ZP_05694397.1| response regulator protein [Staphylococcus aureus A6300] gi|258449104|ref|ZP_05697210.1| response regulator [Staphylococcus aureus A6224] gi|258451349|ref|ZP_05699380.1| response regulator [Staphylococcus aureus A5948] gi|258454418|ref|ZP_05702386.1| response regulator protein [Staphylococcus aureus A5937] gi|262049448|ref|ZP_06022320.1| response regulator [Staphylococcus aureus D30] gi|262051885|ref|ZP_06024100.1| response regulator [Staphylococcus aureus 930918-3] gi|282894297|ref|ZP_06302527.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A8117] gi|282902649|ref|ZP_06310542.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus C160] gi|282907065|ref|ZP_06314913.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus Btn1260] gi|282910044|ref|ZP_06317852.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912292|ref|ZP_06320088.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282912932|ref|ZP_06320724.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M899] gi|282918086|ref|ZP_06325836.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus D139] gi|282920737|ref|ZP_06328456.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A9765] gi|282921308|ref|ZP_06329026.1| two-component response regulator [Staphylococcus aureus subsp. aureus C427] gi|282922560|ref|ZP_06330250.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus C101] gi|282927768|ref|ZP_06335382.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A10102] gi|283767808|ref|ZP_06340723.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus H19] gi|283959502|ref|ZP_06376943.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus A017934/97] gi|293497985|ref|ZP_06665839.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus 58-424] gi|293511575|ref|ZP_06670269.1| transcriptional regulatory protein walR [Staphylococcus aureus subsp. aureus M809] gi|293550184|ref|ZP_06672856.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M1015] gi|295429315|ref|ZP_06821937.1| two-component system response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|297209434|ref|ZP_06925832.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245917|ref|ZP_06929779.1| two-component system [Staphylococcus aureus A8796] gi|297589183|ref|ZP_06947824.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300911458|ref|ZP_07128907.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304379966|ref|ZP_07362695.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13699935|dbj|BAB41234.1| response regulator [Staphylococcus aureus subsp. aureus N315] gi|14245785|dbj|BAB56180.1| response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|49240400|emb|CAG39046.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49243373|emb|CAG41790.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82655326|emb|CAI79706.1| two-component response regulator [Staphylococcus aureus RF122] gi|150373029|dbj|BAF66289.1| response regulator protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156720484|dbj|BAF76901.1| response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|160367093|gb|ABX28064.1| response regulator VicR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725898|gb|EES94627.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728124|gb|EES96853.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257273232|gb|EEV05334.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257276522|gb|EEV07973.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257280008|gb|EEV10595.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257283053|gb|EEV13185.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257285731|gb|EEV15847.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257787528|gb|EEV25868.1| response regulator protein [Staphylococcus aureus A9781] gi|257840023|gb|EEV64488.1| two-component system response regulator [Staphylococcus aureus A9763] gi|257843148|gb|EEV67563.1| response regulator protein [Staphylococcus aureus A9719] gi|257846549|gb|EEV70571.1| response regulator VicR [Staphylococcus aureus A9635] gi|257848156|gb|EEV72148.1| response regulator VicR [Staphylococcus aureus A9299] gi|257850831|gb|EEV74775.1| response regulator protein [Staphylococcus aureus A8115] gi|257855063|gb|EEV78006.1| response regulator protein [Staphylococcus aureus A6300] gi|257857537|gb|EEV80432.1| response regulator [Staphylococcus aureus A6224] gi|257860879|gb|EEV83696.1| response regulator [Staphylococcus aureus A5948] gi|257863512|gb|EEV86272.1| response regulator protein [Staphylococcus aureus A5937] gi|259160212|gb|EEW45241.1| response regulator [Staphylococcus aureus 930918-3] gi|259162445|gb|EEW47015.1| response regulator [Staphylococcus aureus D30] gi|269939544|emb|CBI47902.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus TW20] gi|282314781|gb|EFB45167.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus C101] gi|282315723|gb|EFB46107.1| two-component response regulator [Staphylococcus aureus subsp. aureus C427] gi|282318371|gb|EFB48731.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus D139] gi|282323032|gb|EFB53351.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M899] gi|282323988|gb|EFB54304.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282326110|gb|EFB56415.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329964|gb|EFB59485.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus Btn1260] gi|282590528|gb|EFB95606.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A10102] gi|282594145|gb|EFB99133.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A9765] gi|282597108|gb|EFC02067.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus C160] gi|282763342|gb|EFC03472.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A8117] gi|283461687|gb|EFC08771.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus H19] gi|283469247|emb|CAQ48458.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus aureus subsp. aureus ST398] gi|283789094|gb|EFC27921.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus A017934/97] gi|285815745|gb|ADC36232.1| Two-component response regulator [Staphylococcus aureus 04-02981] gi|290919231|gb|EFD96307.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M1015] gi|291096916|gb|EFE27174.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus 58-424] gi|291465533|gb|EFF08065.1| transcriptional regulatory protein walR [Staphylococcus aureus subsp. aureus M809] gi|295127074|gb|EFG56718.1| two-component system response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|296885895|gb|EFH24830.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177282|gb|EFH36535.1| two-component system [Staphylococcus aureus A8796] gi|297577694|gb|EFH96407.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300887637|gb|EFK82833.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304341546|gb|EFM07456.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436841|gb|ADQ75912.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|320141436|gb|EFW33279.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144418|gb|EFW36183.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323440407|gb|EGA98120.1| two-component response regulator [Staphylococcus aureus O11] gi|323443113|gb|EGB00732.1| two-component response regulator [Staphylococcus aureus O46] gi|329312742|gb|AEB87155.1| Transcriptional regulatory protein walR [Staphylococcus aureus subsp. aureus T0131] gi|329725706|gb|EGG62185.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus 21172] gi|329732312|gb|EGG68662.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus 21193] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 34/220 (15%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 D Y A G+D V L +EE D+ ++ L G+ +E+ R +R + Sbjct: 30 DVYCAYDGNDAVDLI------YEE------EPDIVLLDIMLPGRDG--MEVCREVRKKYE 75 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--- 129 +P+I ++ S + + G DD V KP RE++ARV A RR S +TG Sbjct: 76 MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR-HYSQPAQDTGNVT 134 Query: 130 ------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 I ++ D + +GE L RE + YL + G+ + + + ++G +D Sbjct: 135 NEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWG-YDY 193 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 + V+ I +LR+K+ + DP + ++R +GY Sbjct: 194 FGDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 229 >gi|134299753|ref|YP_001113249.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134052453|gb|ABO50424.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 8/152 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G L L + IR S +P+I ++ + + G DD + KP RE++AR+ AI Sbjct: 57 GPDGLSLCKEIRKISNIPIIMLTAKGDEIDRIIGLEVGADDYIVKPFSPRELVARINAIL 116 Query: 117 RRLK----VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 RR+ + +R + + D R EV+G L +E +L ++ G+ + Sbjct: 117 RRVAAQPIIQEDRTAILSFSELTINPDNRTVEVRGSEIALTPKEFDLLYFMAKTPGRAFS 176 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + + ++G +D + V++HI++LR KL Sbjct: 177 RENLLENVWG-YDFYGDLRTVDTHINRLRDKL 207 >gi|332991876|gb|AEF01931.1| Response regulator consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Alteromonas sp. SN2] Length = 227 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 80/161 (49%), Gaps = 5/161 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + + P++ +S ++ + SG +D + KP E+LARV + R + S Sbjct: 63 LERLRKDNVLTPVLLLSAKSQVEDKVRGLRSGANDYLTKPFAFEELLARVEGLAGRERES 122 Query: 123 NNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ + G + + R + L +E ++LE L+ ++GK V ++ + ++ Sbjct: 123 GDKTLIKVGDLTLDLVNRKVQRGDTEIDLQSKEFQLLECLLRHQGKVVTRSMLLEQVWNY 182 Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + NV++ HIS+LR+K+ +++ R GY I Sbjct: 183 HFDP--QTNVIDVHISRLRQKVDKAFNVPLIETVRGTGYRI 221 >gi|329927440|ref|ZP_08281684.1| putative sensory transduction protein RegX3 [Paenibacillus sp. HGF5] gi|328938453|gb|EGG34839.1| putative sensory transduction protein RegX3 [Paenibacillus sp. HGF5] Length = 224 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 24/184 (13%) Query: 46 VSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH 105 + ++ F +G+ R+ +A+ +P++ +S S+ L + DD + KP H Sbjct: 54 LPGLDGFTVGQ--------RLKKAYPGLPILMLSARTSIDDKLQGLEFA-DDYLTKPFHP 104 Query: 106 REILARVAAIYRRLKVSNNRAETGPIRV--FSDGRDP-----EVQGEVFPLPRRERRILE 158 E+ AR+ + RR V + PIRV S D E GE L ++ +I Sbjct: 105 DELAARLEVLLRRSVVKSAE----PIRVKHLSVYEDENRIVNEDTGEETLLTGKQHQIFM 160 Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHISKLRKKL-RNKLGFDPVDSKRFL 216 YL+ ++G+ + K QI+ +++G + +E + + HI LR+KL R+ + +++ R L Sbjct: 161 YLLQHQGRVMTKEQIYESVWG--ESYIEGDKTLMVHIRYLREKLERDPANPEIIETVRGL 218 Query: 217 GYSI 220 GY + Sbjct: 219 GYRV 222 >gi|307725647|ref|YP_003908860.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307586172|gb|ADN59569.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 347 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 5/141 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--- 121 R A + PLI I + FD+G DDVV P+ RE++ RV R ++ Sbjct: 66 RACYADRRAPLIVIGAGHDREAIGRLFDAGADDVVLSPVDAREVMLRVHLALLRAQLQSA 125 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S++ E G R+ V L RE I L + RG+ V++ QI A++ Sbjct: 126 DSSDMLECGVYRLDRRTCTVHVDSHAVRLTPREFAIAWLLFSRRGEYVSRRQIAGAVWSR 185 Query: 181 FDEAVEENVVESHISKLRKKL 201 ++ + +E HI KLRKKL Sbjct: 186 SEDIIGRT-LEQHIYKLRKKL 205 >gi|317049050|ref|YP_004116698.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|316950667|gb|ADU70142.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 226 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 24/216 (11%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 D + L G GV EG S + + D+S I+ R +R +S+ Sbjct: 26 DAQLVLTGSAGV--EGALSGNYTAMILDIMLPDMSGIDVL------------RQVRQNSR 71 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN---NRAET- 128 +P+I ++ + + G DD V KP + RE++AR+ A+ RR + ++ E Sbjct: 72 LPVIMLTAKGDNIDRVIGLEMGADDYVPKPCYPRELVARLRAVLRRFEDQAPLPDKKEVL 131 Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G + + R E QG+ F L E +L+ LM + V+K ++ G EA + Sbjct: 132 RWGDLSLNPATRITEWQGKAFDLTASEFNLLDLLMRAPDRVVSKDELSEKGLGRPREAYD 191 Query: 187 ENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSI 220 + V+ HIS +R+KL L D V+ + R +GY I Sbjct: 192 RS-VDVHISNIRQKL-AALTADSVNIETVRSIGYRI 225 >gi|242309430|ref|ZP_04808585.1| DNA-binding response regulator [Helicobacter pullorum MIT 98-5489] gi|239524001|gb|EEQ63867.1| DNA-binding response regulator [Helicobacter pullorum MIT 98-5489] Length = 222 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 2/141 (1%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LEL + +R S +P+I S + + + F+ G DD + K E++AR+ A+ +R Sbjct: 62 LELCKKMREISDLPIIMSSARGDIGSKILGFERGADDYLAKSYEPIELVARINALLKRYS 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N G + V S+ R + G L E IL L++N+GK ++ + AI + Sbjct: 122 -ANQVLRCGELEVDSNKRKVTLDGYSIDLTPAEFEILNLLISNKGKPYSRESLSQAISSI 180 Query: 181 FDEAVEENVVESHISKLRKKL 201 ++ + +++HI LR KL Sbjct: 181 APDSSLRS-IDTHIRNLRAKL 200 >gi|191637032|ref|YP_001986198.1| Response regulator [Lactobacillus casei BL23] gi|301065366|ref|YP_003787389.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|190711334|emb|CAQ65340.1| Response regulator [Lactobacillus casei BL23] gi|300437773|gb|ADK17539.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327381059|gb|AEA52535.1| Two-component response regulator [Lactobacillus casei LC2W] gi|327384234|gb|AEA55708.1| Two-component response regulator [Lactobacillus casei BD-II] Length = 228 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124 +R SQ+P+I +S + + +G DD V KP + E++ARV ++ RR + V+N Sbjct: 67 VRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQNEVTNT 126 Query: 125 RA---ETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYG 179 E GP+ + D + + G+ L E IL YL+A+ RV + +IF ++ Sbjct: 127 EPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGIL-YLLASHPNRVFSADEIFERVWQ 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + V V H+S LR K+ G +++ +GY ++ Sbjct: 186 Q-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227 >gi|169630420|ref|YP_001704069.1| putative sensory transduction protein [Mycobacterium abscessus ATCC 19977] gi|169242387|emb|CAM63415.1| Putative sensory transduction protein [Mycobacterium abscessus] Length = 249 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 14/153 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R S ++ ++ + T+ G DD V KP RE++ARV A+ RR + Sbjct: 75 IEVCRQLRVFSDAYVVMLTARDTEVDTIVGLSVGADDYVTKPFSPREVVARVRAMLRRPR 134 Query: 121 VSNN-----RAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + E P RVF DGR+ V L R E +L L + G ++ Sbjct: 135 RAPESPAAVTPELSPPRVFGALRINVDGREVHVGERPVTLTRTEFDVLAALSSRPGIVLS 194 Query: 170 KTQIFSAIYGLFDEAV-EENVVESHISKLRKKL 201 + Q+ ++G D V +N+V+ H+ LR+KL Sbjct: 195 RKQLLDTVWG--DTWVGNDNIVDVHVGHLRQKL 225 >gi|160882234|ref|ZP_02063237.1| hypothetical protein BACOVA_00180 [Bacteroides ovatus ATCC 8483] gi|156112386|gb|EDO14131.1| hypothetical protein BACOVA_00180 [Bacteroides ovatus ATCC 8483] Length = 228 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 12/165 (7%) Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + IR + +P++ ++ S LD FD+G DD + KP RE+ AR+ + +R Sbjct: 62 ELAKEIRKTNPHIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR-- 119 Query: 121 VSNNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V+ N E V++D R D E L +E +L Y++ N + +++ +I Sbjct: 120 VAGNAQELPQELVYADLRIDLQRKDVERNSISIKLSPKEYNLLLYMVENAERVLSRVEIA 179 Query: 175 SAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ FD N ++ +I+ LRKK+ + +K +G+ Sbjct: 180 EKVWNTHFDTGT--NFIDVYINYLRKKIDRDFEPKLIHTKAGMGF 222 >gi|145221065|ref|YP_001131743.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315441964|ref|YP_004074843.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145213551|gb|ABP42955.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315260267|gb|ADT97008.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 248 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 4/153 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128 + +P+ +S ++ + ++G DD + KP E++AR+ A+ RR S+ ++T Sbjct: 93 NDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHHSDPTSDTMT 152 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + + + R V GE L +RE +L L N G +++ ++ ++G +D V+ Sbjct: 153 VGSLTIDTARRLVFVAGERVELTKREFDLLAALAENAGVVLSRQRLLELVWG-YDFDVDT 211 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NV + +S LR+KL + + R +GY + Sbjct: 212 NVADVFVSYLRRKLERDGLPRVIHTVRGIGYVL 244 >gi|330720729|gb|EGG98956.1| Functional role page for TorCAD operon transcriptional regulatory protein TorR [gamma proteobacterium IMCC2047] Length = 245 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 21/216 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGE 58 +++DD + ++ ++ F GF + E+ S + I+ L+ GE Sbjct: 8 LLVVDDEPVTRNNFVDYF-----EAAGFFVTDLEDGKSVSETLAGNEIDLVLLDINLPGE 62 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L + R +R S + +I ++ + + G DD V KP++ RE+LARV + R Sbjct: 63 DGLSIARELRRTSDIGIILVTGRTEDIDRVVGLEIGADDYVTKPVNPRELLARVKSTLWR 122 Query: 119 L------KVSNNRAETGPIRVFSDGR-DPEVQ------GEVFPLPRRERRILEYLMANRG 165 + ++ + + G I+VFS D E Q G L E +IL Y +N G Sbjct: 123 IDKEDHANLNASPSSKGKIKVFSKWHLDLEKQQLRNKEGRPTSLTDAEFKILSYFTSNPG 182 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + + ++ + I DE V+ + +LRKKL Sbjct: 183 TVLNRDKLINQINNAKDENFSSRTVDVLVGRLRKKL 218 >gi|323483719|ref|ZP_08089099.1| regulatory protein VanR [Clostridium symbiosum WAL-14163] gi|323402910|gb|EGA95228.1| regulatory protein VanR [Clostridium symbiosum WAL-14163] Length = 236 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 90/213 (42%), Gaps = 24/213 (11%) Query: 27 EGFNSLEF----EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82 EGF +E E +S D+ ++ + GK + L IR VP++ ++ Sbjct: 30 EGFEVIEASNGKEAVEKSGGSVDLIILDVMMPGKSGILACLE--IRKKLTVPILFLTART 87 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV---SNNRAETG------PIRV 133 F +G DD + KP + E++ARV A+ RR V NR E + + Sbjct: 88 QDSDKALGFCAGGDDYLAKPFSYTELVARVKAMLRRYYVYQGGGNRKEDDVQIQIRDLLL 147 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 D R+ ++G L E RIL L NRGK I+ +++ + N V H Sbjct: 148 NKDSREVRLEGGEILLTDLEYRILLLLAENRGKIFTIQNIYESVWEEPYYYISNNTVMVH 207 Query: 194 ISKLRKKLRNKLGFDPVDSKRFL-----GYSID 221 I LRKKL DP + K + GY I+ Sbjct: 208 IRNLRKKLEK----DPKNPKYIVNVWGKGYRIE 236 >gi|319654049|ref|ZP_08008141.1| hypothetical protein HMPREF1013_04760 [Bacillus sp. 2_A_57_CT2] gi|317394242|gb|EFV74988.1| hypothetical protein HMPREF1013_04760 [Bacillus sp. 2_A_57_CT2] Length = 224 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNN 124 IR S VP+I +S+ + +D F G DD + KP + E+L R+ A+ RR L +S++ Sbjct: 66 IRRVSNVPIIILSNKSEKEDIVDGFKQGADDYLIKPFNKNELLVRIEALLRRSSLVISDS 125 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 G I + G+ + +E ++ +L++N ++ + I+ + Sbjct: 126 LFFQGLIWD-ETSFNLSFNGKSISMTPKEFALVGHLLSNINNVFSREALLQTIWSQ-EWK 183 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 E ++SHI +R+KLR GF PVD K G W Sbjct: 184 TESRTIDSHIRNIREKLRQS-GF-PVDRHLKTIWGVGYKW 221 >gi|311694076|gb|ADP96949.1| two component transcriptional regulator, winged helix family [marine bacterium HP15] Length = 244 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 13/142 (9%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128 +P++ ++ S + D+G DD + KP E+ AR+ A+ RR SN +E Sbjct: 74 IPVVFLTQRDSEADIVRALDAGADDYLAKPARAAELGARINALARR---SNPDSEKEVLR 130 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 GP + + R + GE L ++ + +L N+G+ + + + ++GL + + Sbjct: 131 YGPFEINTQQRVIALHGEELTLTDKDFDLTLFLFQNQGRLLTREMLLERVWGLARD-INT 189 Query: 188 NVVESHISKLRKKLRNKLGFDP 209 V++H+S+LR+ +LG +P Sbjct: 190 RTVDTHMSRLRR----RLGLNP 207 >gi|304408471|ref|ZP_07390115.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342556|gb|EFM08406.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/153 (24%), Positives = 77/153 (50%), Gaps = 2/153 (1%) Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAET 128 ++ +PL+ ++ + FD G DD V KP E++ARV A+ +R +++ ++ + Sbjct: 71 YADMPLLMLTAKGETSQKIKGFDLGTDDYVVKPFIPEELVARVKALLKRYRIAVSSSVQI 130 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + + + LP +E +L L + G+ + + Q+ AI+G+ D E Sbjct: 131 GAVTLNRRTFETLMGDASLSLPPKEFELLFKLASYPGQTLLREQLIEAIWGI-DFEGNER 189 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ HI++LR++ + + R LGY ++ Sbjct: 190 TLDVHINRLRERFPEAEAGFRIATVRGLGYRME 222 >gi|295106136|emb|CBL03679.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 238 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 66/158 (41%), Gaps = 17/158 (10%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++L R +R S P+I +S + D+G DD + KP E+LAR+ RRL Sbjct: 70 IDLIRQVRTWSHTPIIVVSARTEDADKVAALDAGADDYLIKPFSVEELLARLRVATRRLA 129 Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + GP+ R+ R + GE L E ++L L N GK + I Sbjct: 130 ADSGTDRDGPVYENGDLRIDYAARTVTLAGEEVHLTPIEYKLLALLARNTGKVLTHNAIL 189 Query: 175 SAIYGLFDEAVEENVVESHISKLR---KKLRNKLGFDP 209 ++G N + S + LR LR K+ DP Sbjct: 190 KEVWG--------NALASDLPSLRVFMATLRKKIERDP 219 >gi|288555257|ref|YP_003427192.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] gi|288546417|gb|ADC50300.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] Length = 233 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 7/162 (4%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLKV 121 L RI + + P+I ++ ++ + D G +D V KP E+LAR+ A R +L Sbjct: 66 LRRIRKEGNTTPVIMLTARDTIVDKVMGLDQGANDYVTKPFEIEELLARIRACLRTQLST 125 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ-GE-VFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + G + ++ + R E++ GE L RE +L YL+ + + + + QI Sbjct: 126 SGTHLDEGELTLADLYVNERTREIKRGETTIELTPREFDLLVYLLRHPEQVMTREQILEH 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G FD + NVV+ +I +R+KL + + R +GY Sbjct: 186 VWG-FDYFGDTNVVDVYIRYMRQKLDKPFDAPLIHTVRGVGY 226 >gi|302540147|ref|ZP_07292489.1| DNA-binding response regulator TcrA [Streptomyces hygroscopicus ATCC 53653] gi|302457765|gb|EFL20858.1| DNA-binding response regulator TcrA [Streptomyces himastatinicus ATCC 53653] Length = 234 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/233 (25%), Positives = 102/233 (43%), Gaps = 39/233 (16%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66 +RAL +GY DGV E L + RE I ++ G +++ R+ Sbjct: 19 ERALTLEGYRVTSVSDGV-----------EALAAIHREHPDVIVLDVMMPGVDGIQVCRV 67 Query: 67 IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------- 118 +RA + P++ ++ ++ D+G DD V KP E+ AR+ A+ RR Sbjct: 68 LRAEGDRTPILMLTARVETADRIEGLDAGADDYVAKPFDVEEVFARLRALLRRVAPVPEP 127 Query: 119 ----------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 L V++ R + RV+ G + E L R E +LE L N G + Sbjct: 128 TTEGTVFDATLAVADLRLDPSARRVWRGGTELE-------LTRTEFDLLELLARNAGIVL 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 I+S I+G +D + +I LR+K+ ++ G P + + R +GY++ Sbjct: 181 DHGTIYSRIWG-YDFGPGSKNLAVYIGYLRRKV-DQTGLTPLIHTVRGVGYTL 231 >gi|209518321|ref|ZP_03267146.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209501240|gb|EEA01271.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 257 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 17/169 (10%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA +S +P++ ++ S+ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 118 Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A GP V GR V +V L RE +LE L+ G+ V+K Q Sbjct: 119 -----GAGGGPTVVRHGSLSFDQVGRIAYVNDQVIDLSARELGLLEVLLQRIGRLVSKEQ 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + E V N +E ++ +LRKK+ G + + R LGY ++ Sbjct: 174 LVDHLCE-WGEEVSNNAIEVYVHRLRKKIEPS-GVRII-TVRGLGYCLE 219 >gi|163749892|ref|ZP_02157137.1| DNA-binding response regulator [Shewanella benthica KT99] gi|161330406|gb|EDQ01385.1| DNA-binding response regulator [Shewanella benthica KT99] Length = 225 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 22/172 (12%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L+L +RA SQ P++ +S + + +G DD + KP E+L R + +R Sbjct: 60 LKLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRG 119 Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 L V N E +V DG + +Q + F ++L+YLM + + V++ Sbjct: 120 LSQPAETELSVGNLVMELLTRKVTLDGSELMLQPKEF-------QLLKYLMEHPNQVVSR 172 Query: 171 TQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 T +F A++ FD NV++ HI+KLR+K +LGF + +++ R GY + Sbjct: 173 TLLFEAVWDYHFDP--RTNVIDVHIAKLRRKF-EELGFGELIETVRGAGYRL 221 >gi|17546253|ref|NP_519655.1| phosphate regulon two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428550|emb|CAD15236.1| probable phosphate regulon two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 237 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 17/164 (10%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122 Q+P+I ++ Q + D+G DD V KP +E+LAR+ A+ RR + ++ Sbjct: 76 QIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVLRRRAPQLTDDVVAIN 135 Query: 123 NNRAETGPIRVFSDGRDPE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R + RV + + E ++ ++ P E R+L +LM + + +++Q+ ++G Sbjct: 136 GLRLDPATHRVTAVNSESENPIKLDLGP---TEFRLLHFLMTHPERVHSRSQLLDQVWG- 191 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D VEE V+ HI +LR L +++ R GY + N Sbjct: 192 -DHVFVEERTVDVHIKRLRAALAPGGYSSMIETVRGSGYRLARN 234 >gi|21281747|ref|NP_644833.1| response regulator [Staphylococcus aureus subsp. aureus MW2] gi|57651127|ref|YP_184930.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus COL] gi|87160310|ref|YP_492740.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88193841|ref|YP_498626.1| two-component response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266465|ref|YP_001245408.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150392498|ref|YP_001315173.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|221141403|ref|ZP_03565896.1| response regulator VicR [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316856|ref|ZP_04840069.1| response regulator VicR [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|254663952|ref|ZP_05143424.1| response regulator VicR [Staphylococcus aureus subsp. aureus Mu50-omega] gi|269201708|ref|YP_003280977.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus ED98] gi|284023055|ref|ZP_06377453.1| response regulator VicR [Staphylococcus aureus subsp. aureus 132] gi|294849846|ref|ZP_06790586.1| transcriptional regulatory protein walR [Staphylococcus aureus A9754] gi|295406882|ref|ZP_06816686.1| two-component system [Staphylococcus aureus A8819] gi|296276710|ref|ZP_06859217.1| response regulator VicR [Staphylococcus aureus subsp. aureus MR1] gi|81695624|sp|Q5HJX7|WALR_STAAC RecName: Full=Transcriptional regulatory protein walR gi|81704770|sp|Q7A216|WALR_STAAW RecName: Full=Transcriptional regulatory protein walR gi|123407141|sp|Q2G2U6|WALR_STAA8 RecName: Full=Transcriptional regulatory protein walR gi|123763346|sp|Q2FKN8|WALR_STAA3 RecName: Full=Transcriptional regulatory protein walR gi|212288558|sp|A6TXG8|WALR_STAA2 RecName: Full=Transcriptional regulatory protein walR gi|212288559|sp|A5INQ9|WALR_STAA9 RecName: Full=Transcriptional regulatory protein walR gi|212288573|sp|Q2YUQ3|WALR_STAAB RecName: Full=Transcriptional regulatory protein walR gi|212288574|sp|A6QD57|WALR_STAAE RecName: Full=Transcriptional regulatory protein walR gi|212288575|sp|Q99XF3|WALR_STAAM RecName: Full=Transcriptional regulatory protein walR gi|212288576|sp|Q7A8E1|WALR_STAAN RecName: Full=Transcriptional regulatory protein walR gi|212288577|sp|Q6GKS7|WALR_STAAR RecName: Full=Transcriptional regulatory protein walR gi|212288578|sp|Q6GD72|WALR_STAAS RecName: Full=Transcriptional regulatory protein walR gi|212288579|sp|A8YYU1|WALR_STAAT RecName: Full=Transcriptional regulatory protein walR gi|212288580|sp|Q9RDT5|WALR_STAAU RecName: Full=Transcriptional regulatory protein walR gi|212288582|sp|A7WWQ5|WALR_STAA1 RecName: Full=Transcriptional regulatory protein walR gi|5114230|gb|AAD40237.1|AF136709_1 response regulator YycF [Staphylococcus aureus] gi|21203182|dbj|BAB93883.1| response regulator [Staphylococcus aureus subsp. aureus MW2] gi|57285313|gb|AAW37407.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus COL] gi|87126284|gb|ABD20798.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201399|gb|ABD29209.1| two-component response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147739534|gb|ABQ47832.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149944950|gb|ABR50886.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|262073998|gb|ACY09971.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus ED98] gi|294823394|gb|EFG39823.1| transcriptional regulatory protein walR [Staphylococcus aureus A9754] gi|294968347|gb|EFG44372.1| two-component system [Staphylococcus aureus A8819] gi|298693340|gb|ADI96562.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus ED133] gi|302331790|gb|ADL21983.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus JKD6159] gi|302749929|gb|ADL64106.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus str. JKD6008] gi|312828581|emb|CBX33423.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129561|gb|EFT85553.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS03] gi|315195244|gb|EFU25632.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS00] gi|315197936|gb|EFU28269.1| adenylosuccinate synthase [Staphylococcus aureus subsp. aureus CGS01] gi|329731617|gb|EGG67977.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus 21189] Length = 233 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 34/220 (15%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 D Y A G+D V L +EE D+ ++ L G+ +E+ R +R + Sbjct: 28 DVYCAYDGNDAVDLI------YEE------EPDIVLLDIMLPGRDG--MEVCREVRKKYE 73 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG--- 129 +P+I ++ S + + G DD V KP RE++ARV A RR S +TG Sbjct: 74 MPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR-HYSQPAQDTGNVT 132 Query: 130 ------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 I ++ D + +GE L RE + YL + G+ + + + ++G +D Sbjct: 133 NEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWG-YDY 191 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 + V+ I +LR+K+ + DP + ++R +GY Sbjct: 192 FGDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 227 >gi|332655319|ref|ZP_08421059.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332515824|gb|EGJ45434.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 245 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 18/167 (10%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121 +R S VP+I ++ + + G DD + KP + E++ARV + RR Sbjct: 81 LREGSNVPIILLTAKSEDNDKILGLNIGADDYITKPFNPLEVIARVKSQLRRYTALGGAE 140 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + + V GE L E IL+ LM + G+ + QI+ ++ Sbjct: 141 KAPGLLSVGPISMDDGAKLVTVDGEPVSLTPIEYNILKLLMTHPGQVFSSAQIYEQVWN- 199 Query: 181 FDEAV-EENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221 D A EN V HI LR+K+ +P + + LGY +D Sbjct: 200 -DPAYGSENTVAVHIRHLREKIE----INPAEPRYLKVVWGLGYKMD 241 >gi|328480232|gb|EGF49152.1| two-component response regulator [Lactobacillus rhamnosus MTCC 5462] Length = 188 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124 +R SQ+P+I +S + + +G DD V KP + E++ARV ++ RR + V+N+ Sbjct: 27 VRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQNEVTNS 86 Query: 125 RA---ETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYG 179 E GP+ + D + + G+ L E IL YL+A+ RV + +IF ++ Sbjct: 87 EPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGIL-YLLASHPNRVFSADEIFERVWQ 145 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + V V H+S LR K+ G +++ +GY ++ Sbjct: 146 Q-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 187 >gi|327490080|gb|EGF21868.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] gi|332367393|gb|EGJ45126.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] Length = 234 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD + KP +E+LAR+ ++ RR+ + N + G + G + L Sbjct: 92 LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202 +E +++E+LM N K ++ +IF ++ DE ++E V +IS LR+KL+ Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWANDEDEDLDEGFVWIYISYLRQKLK 204 >gi|325690941|gb|EGD32941.1| DNA-binding response regulator [Streptococcus sanguinis SK115] Length = 234 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 61/114 (53%), Gaps = 3/114 (2%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D+G DD + KP +E+LAR+ ++ RR+ + N + G + G + L Sbjct: 92 LDAGADDYLTKPFSLKELLARLRSMSRRVATFTPNLLQIGQTS-LNVGEHELISSNSIRL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLR 202 +E +++E+LM N K ++ +IF ++ DE ++E V +IS LR+KL+ Sbjct: 151 AGKESKMMEFLMLNAQKSLSTQEIFRHVWANDEDEDLDEGFVWIYISYLRQKLK 204 >gi|313681654|ref|YP_004059392.1| two component transcriptional regulator, winged helix family [Sulfuricurvum kujiense DSM 16994] gi|313154514|gb|ADR33192.1| two component transcriptional regulator, winged helix family [Sulfuricurvum kujiense DSM 16994] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 16/156 (10%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 + P I I+ ++ + +D+G DD + KP +E+ R+ A+ +R S+ E PI Sbjct: 81 KAPAIFITSLNTIDDLSNAYDAGCDDYLKKPFELKELELRIRALIKR---SSILGEDTPI 137 Query: 132 RVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + GR + E+ LPR+E +IL+ L+ + G V+ + + + FDE Sbjct: 138 AISETIVFDPKLGRLTNDEDEI-TLPRKEAKILKILLCHPGSIVSSKVLIESAWD-FDED 195 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E + +HI K LR LG + + + R GY I Sbjct: 196 GSEESLRTHI----KNLRKHLGKERIINIRGQGYQI 227 >gi|302185041|ref|ZP_07261714.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae 642] Length = 222 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/220 (24%), Positives = 100/220 (45%), Gaps = 10/220 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D +A G G +++ + + + A E I L G L Sbjct: 3 LLLVEDHVPLADELLAALGRQGYAVDWLA--DGRDAVHQGASEPYDLIVLDLGLPGMPGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + R+ P++ ++ S ++ +G DD + KP H E+ R+ A+ RR Sbjct: 61 EVLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N+ E+ + + + G L E R+L Y M + G+ ++K+ + +Y Sbjct: 121 GLANQPTLESAGLNLDESRQCVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +E + NV+E H++ LR+ KLG V+++R GY Sbjct: 181 DGENER-DSNVIEVHVNHLRR----KLGRAVVETRRGQGY 215 >gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300074627|gb|ADJ64026.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 5/154 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRA 126 R H P++ ++ ++ + D G DD + KP RE+ AR+ + RR S N Sbjct: 68 RGH-HTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSGGESTNLL 126 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 + + R + G+ L RRE +LE + A G+ K ++ ++ + D+ Sbjct: 127 HCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFTV-DDNPS 185 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N VE ++++LRKKL F+ + + R LGY + Sbjct: 186 ANSVEQYVARLRKKL-AAAAFE-IRTLRGLGYQL 217 >gi|300693555|ref|YP_003749528.1| two-component response regulator transcription regulator protein [Ralstonia solanacearum PSI07] gi|299075592|emb|CBJ34885.1| two-component response regulator transcription regulator protein [Ralstonia solanacearum PSI07] Length = 231 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 14/167 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----- 119 R IRA S+VP++ ++ + + G DD V KP E++AR+ AI RR+ Sbjct: 65 RRIRAASRVPVLMLTARGDDIDRISGLNLGADDYVPKPCTPGELVARLRAILRRVPAAGT 124 Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V+N GP+ ++ R Q L E ++E L + G+ V+K I Sbjct: 125 GDASVANGPIHAGPLALWPSSRRATWQDAPLDLTGTEFSLIEILARHAGRLVSKEDISQQ 184 Query: 177 IYGLFDEAVE--ENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 FD + + ++ HIS +R+KL + P + S R +GY + Sbjct: 185 A---FDRPLARFDRRIDVHISSIRQKLGQRPDGQPWIISVRGMGYQL 228 >gi|218903108|ref|YP_002450942.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218539130|gb|ACK91528.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 254 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ ++ + F G DD + KP E++ RV A+ +R +++ +++ Sbjct: 97 LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 156 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + + + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 157 IQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 215 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + + + + R LGY ++ Sbjct: 216 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 251 >gi|118479970|ref|YP_897121.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196044002|ref|ZP_03111239.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225866850|ref|YP_002752228.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|118419195|gb|ABK87614.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196025338|gb|EDX64008.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225785931|gb|ACO26148.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 232 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 18/159 (11%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172 KV+ +++ E G + + + R +V GE L +E IL YL+A+ K+V + Sbjct: 124 LNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL-----RNKL 205 IF ++ D+ E N V HI LRKKL +NKL Sbjct: 183 IFQQVWA--DDYFEGGNTVMVHIRTLRKKLGEDKRKNKL 219 >gi|30022514|ref|NP_834145.1| two-component response regulator yvcP [Bacillus cereus ATCC 14579] gi|229048152|ref|ZP_04193721.1| Two-component response regulator [Bacillus cereus AH676] gi|229111911|ref|ZP_04241455.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229129718|ref|ZP_04258686.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|229147010|ref|ZP_04275370.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|296504931|ref|YP_003666631.1| two-component response regulator yvcP [Bacillus thuringiensis BMB171] gi|29898072|gb|AAP11346.1| Two-component response regulator yvcP [Bacillus cereus ATCC 14579] gi|228636398|gb|EEK92868.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228653835|gb|EEL09705.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228671475|gb|EEL26775.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228723139|gb|EEL74515.1| Two-component response regulator [Bacillus cereus AH676] gi|296325983|gb|ADH08911.1| two-component response regulator yvcP [Bacillus thuringiensis BMB171] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 125 SAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225 >gi|86140162|ref|ZP_01058724.1| DNA-binding response regulator [Roseobacter sp. MED193] gi|85823099|gb|EAQ43312.1| DNA-binding response regulator [Roseobacter sp. MED193] Length = 221 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 23/232 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 F+LI+D + + DG ++ L+ + D+ ++ L G G Sbjct: 3 FLLIEDNFDLAQAICSRMKQDGHVVDHAARLQDAFAYSETGEYDLILLDIMLPDGDGRSF 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ R P+I ++ + + D G DD V KP H E+ AR A+ RR Sbjct: 63 LKRHRA--GKKDTPVIVLTARSQVSDRISMLDLGADDYVTKPFDHEELQARCRAVLRR-- 118 Query: 121 VSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + A+T +R+ + DP V G L RE R+LE L+ + G+ K ++F Sbjct: 119 -KSGTAQT-TVRLGNIAFDPVAGSLIVDGVAITLRNRELRLLELLINSPGQVFPKHKLFD 176 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSIDWN 223 ++ +DE V EN +E +I +LRK L DP + + R LGY +D++ Sbjct: 177 RLFS-YDEDVSENAIEVYIGRLRKHL------DPSSLRITTLRGLGYRLDYD 221 >gi|146295477|ref|YP_001179248.1| two component transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409053|gb|ABP66057.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 221 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 9/136 (6%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---- 128 +P I ++ L F+ G +D + KP E++ARV + RR S N E+ Sbjct: 70 IPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRR---SKNFEESIKLL 126 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G + +F V GE L +E +L +L N+ ++ +I ++G FD E Sbjct: 127 DGKVEIFPKRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWG-FDFIGET 185 Query: 188 NVVESHISKLRKKLRN 203 V+ HI +LR+KL++ Sbjct: 186 RTVDVHIKQLREKLKD 201 >gi|300691227|ref|YP_003752222.1| DNA-binding response regulator in two-component regulatory system with phoR [Ralstonia solanacearum PSI07] gi|299078287|emb|CBJ50935.1| DNA-binding response regulator in two-component regulatory system with phoR [Ralstonia solanacearum PSI07] Length = 237 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 17/164 (10%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122 Q+P+I ++ Q + D+G DD V KP +E+LAR+ A+ RR + ++ Sbjct: 76 QIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVLRRRAPQLTDDVVAIN 135 Query: 123 NNRAETGPIRVFSDGRDPE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R + RV + + E ++ ++ P E R+L +LM + + +++Q+ ++G Sbjct: 136 GLRLDPATHRVTAMNGESENPIKLDLGP---TEFRLLHFLMTHPERVHSRSQLLDQVWG- 191 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D VEE V+ HI +LR L + +++ R GY + N Sbjct: 192 -DHVFVEERTVDVHIKRLRAALAPGGYSNMIETVRGSGYRLARN 234 >gi|258517267|ref|YP_003193489.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257780972|gb|ACV64866.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 226 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/139 (23%), Positives = 71/139 (51%), Gaps = 5/139 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----S 122 IR S +P+I ++ L F+ GVDD + KP +E++AR+ A+ +R + Sbjct: 69 IRERSNIPIIILTARDEEYAKLLGFELGVDDYITKPFSPKEVVARIKAVLKRANIIPLSE 128 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + +T IR+ R+ + + L +E +L + + + + + ++ + ++G +D Sbjct: 129 ESFLKTDKIRINPSTREVYLDDKELKLTPKEYTLLYHFVKYKDQVFTREELLTEVWG-YD 187 Query: 183 EAVEENVVESHISKLRKKL 201 + V++HI ++R+KL Sbjct: 188 FYGDLRTVDTHIKQIREKL 206 >gi|228987786|ref|ZP_04147896.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771944|gb|EEM20400.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 7/149 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 LE+ RIIR S VP++ +S + G DD + KP E+ ARV A I R Sbjct: 62 LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K S I++ DP E G+ L +E IL+ + N+ + K QI+ Sbjct: 122 KYSATETTEKMIQIGDLMIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 + I+ + ++NV+ H+ +LR+K+ + Sbjct: 182 TLIWN-EEYYGDDNVINVHMRRLREKIES 209 >gi|218234534|ref|YP_002369247.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218162491|gb|ACK62483.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 125 SAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225 >gi|167461939|ref|ZP_02327028.1| hypothetical protein Plarl_05185 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 205 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 6/161 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R+ + + VP+I ++ ++ + D G +D V KP E+LAR+ + R + Sbjct: 36 LRRLRQNNPTVPVILLTARDAVPDRVSGLDQGANDYVTKPFAIEELLARIRNLLRITEQQ 95 Query: 123 NNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N + V R+ G+ L +E +L+YLM ++G+ + I S + Sbjct: 96 NQPENEQTLHVDDLDMNLKSREVRRNGQWVELTPKEFDLLQYLMEHKGEVRTREDIISDV 155 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +G +D + N+V+ +I LR+K+ + + R +GY Sbjct: 156 WG-YDFVGDTNIVDVYIRYLRQKIEKGFKGKLIHTIRGIGY 195 >gi|170723552|ref|YP_001751240.1| two component heavy metal response transcriptional regulator [Pseudomonas putida W619] gi|169761555|gb|ACA74871.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 224 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 4/159 (2%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +RA Q P+I ++ ++ + G DD + KP E++AR+ A+ RR Sbjct: 64 RALRARKQTPVIMLTARERVEDRIHGLREGADDYLGKPFSFLELVARLQALTRRSGSHEP 123 Query: 125 -RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FD 182 + + G + + R G+ L +E +L L +G+ ++KT I ++ + FD Sbjct: 124 LQVQVGDLWIDLMARKASRGGQRLDLTAKEFSLLSVLARRQGEILSKTAIAELVWDINFD 183 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVVE I +LR KL + + R +GY ++ Sbjct: 184 S--DANVVEVAIKRLRAKLDGPFDNKLLHTIRGMGYVLE 220 >gi|75763158|ref|ZP_00742928.1| Two-component response regulator yvcP [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899608|ref|YP_002448019.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228902969|ref|ZP_04067109.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228967519|ref|ZP_04128546.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|229152642|ref|ZP_04280830.1| Two-component response regulator [Bacillus cereus m1550] gi|74489353|gb|EAO52799.1| Two-component response regulator yvcP [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543835|gb|ACK96229.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228630788|gb|EEK87429.1| Two-component response regulator [Bacillus cereus m1550] gi|228792174|gb|EEM39749.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228856645|gb|EEN01165.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 252 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 82 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 141 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 142 SAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLEA-- 199 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 200 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 242 >gi|323527265|ref|YP_004229418.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323384267|gb|ADX56358.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 267 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 17/169 (10%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA +S +P++ ++ S+ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 118 Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A GP V GR + +V L RE +LE L+ G+ V+K Q Sbjct: 119 -----GAGGGPTVVRHGSLSFDQVGRIAYINDQVIDLSARELGLLEVLLQRIGRLVSKEQ 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + E V N +E ++ +LRKK+ G + + R LGY ++ Sbjct: 174 LVDHLCE-WGEEVSNNAIEVYVHRLRKKIEPS-GVRII-TVRGLGYCLE 219 >gi|262040109|ref|ZP_06013362.1| DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042462|gb|EEW43480.1| DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 240 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 6/153 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S VP++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K + P+ + +GR + ++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRDLQAMDAQSPL-IVDEGRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ Q+ + +Y + V + ++SHI LR+KL Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212 >gi|238763220|ref|ZP_04624185.1| Transcriptional regulatory protein creB [Yersinia kristensenii ATCC 33638] gi|238698493|gb|EEP91245.1| Transcriptional regulatory protein creB [Yersinia kristensenii ATCC 33638] Length = 232 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 8/134 (5%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA------ETGPIRVFSDGRDPEVQGEVF 147 G DD + KP RE+ ARV + RRL+ S RA + GP + G +V Sbjct: 96 GADDYIAKPFSPREVSARVRTVLRRLQKSQTRAVSATLHQFGPFTLDEAGARVTYHQQVL 155 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLG 206 L R E +L+ L+ + ++ Q+ ++ +E+ ++ V++HI LR KLR + Sbjct: 156 WLTRYEYLLLKTLLLAPERVFSRQQLMDIVWAQAEES-QDRTVDTHIKTLRSKLRMIRDE 214 Query: 207 FDPVDSKRFLGYSI 220 P+ + R LGYS+ Sbjct: 215 ESPIRTHRGLGYSL 228 >gi|228960716|ref|ZP_04122355.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798932|gb|EEM45907.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 125 SAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225 >gi|229101412|ref|ZP_04232155.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228681988|gb|EEL36122.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 10/160 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR+ S VP+I ++ + G DD V KP H E+ AR+ A+ RR +N Sbjct: 67 IRSFSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR---TNEHK 123 Query: 127 ETGPIRVFSDGRD--PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + + D V E L E +L + + +++ Q+ I+GL + Sbjct: 124 QIQYHGILWDEAKHFASVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL-NTN 182 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 E+ V+SHI LR KLR K F P+D K G W Sbjct: 183 TEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 220 >gi|222152394|ref|YP_002561569.1| response regulator protein [Streptococcus uberis 0140J] gi|222113205|emb|CAR40676.1| response regulator protein [Streptococcus uberis 0140J] Length = 227 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 80/150 (53%), Gaps = 5/150 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GP 130 + P++ I+ L++ F GVDD + KPI E+ RV A+ RR ++ ++R + Sbjct: 73 KTPVLMITAKSQLESLETAFKLGVDDYLVKPIRLPELSLRVQALLRRSQLESDRQLSFKG 132 Query: 131 IRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 R+ D + E LP++E +L LM++ K + + I+G+ +E +E Sbjct: 133 SRLEFDAQTLTYLDSNERLQLPQKEFLLLYKLMSHPEKIFTRLDLLDDIWGM-EEDRDER 191 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +V++ + +LR+K++N FD + + R LGY Sbjct: 192 LVDACVKRLRQKIQNNPDFD-ILTVRGLGY 220 >gi|196042971|ref|ZP_03110210.1| regulatory protein VanR [Bacillus cereus 03BB108] gi|229185367|ref|ZP_04312550.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|196026455|gb|EDX65123.1| regulatory protein VanR [Bacillus cereus 03BB108] gi|228598100|gb|EEK55737.1| Two-component response regulator [Bacillus cereus BGSC 6E1] Length = 229 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 72/142 (50%), Gaps = 9/142 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR Q+P+I +S + SG +D + KP + E++AR+ + RR +V Sbjct: 70 IREQYQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRVYQTEE 129 Query: 127 ------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179 E G ++V + R ++ E L +E IL L+ N+GK + +I+ ++ Sbjct: 130 VKQFIHEIGHLKVDEETRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYEMVWED 189 Query: 180 LFDEAVEENVVESHISKLRKKL 201 LF ++ +N V HI+K+R+K+ Sbjct: 190 LFYKS--DNTVMVHITKIREKI 209 >gi|94312408|ref|YP_585618.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93356260|gb|ABF10349.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Cupriavidus metallidurans CH34] Length = 261 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 35/230 (15%) Query: 2 FVLIDD----RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57 +++DD RA++ + Y+A FG + EG ++ + ++++ + L G Sbjct: 29 LLIVDDDPQIRAMLAE-YLATFGMEAEGAEGGTAMR-----AAMSKQEYDLVILDLSLPG 82 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E L L R IR S +P+I ++ L + + G DD V KP RE++AR+ + R Sbjct: 83 ENGLTLCREIRESSNLPVIMLTARAELADRVVGLEVGADDYVTKPFEMRELVARIHTVLR 142 Query: 118 RLKVSNNR-AETGP--------------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 R + R A P +R D D V PL E R+L + Sbjct: 143 RSRADVRRPAPAAPGHEVRFAAWRLNTTLRQLVDAED-----TVVPLSNAEFRLLLTFIE 197 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 + + + + + + G D V + ++ +S+LR+KLR+ DP DS Sbjct: 198 HPNRVLDREMLINTARG-RDLDVFDRSIDLLVSRLRQKLRD----DPRDS 242 >gi|120556590|ref|YP_960941.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120326439|gb|ABM20754.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 233 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/231 (24%), Positives = 101/231 (43%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 VLI+D A ++D Y A F G + + + + D++ I+ L + E Sbjct: 5 IVLIEDEAGIRDNYRAAFERRGYRVSTYGDRPAAWQVLRQSLPDLAIIDVGLGEEAEGGF 64 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 L + +R+ S +P+I ++ S ++ G DD V K + +LAR+ A+ RR Sbjct: 65 TLCQDLRSLSATLPIIFLTARDSDIDSVHGLRLGADDYVTKDMSLEHLLARITALLRRAE 124 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 L+ ++ G + + D QG+ L E +L L+ + G ++ Q+ Sbjct: 125 AWAEALQKPDDILTRGKLTLNVDRMTVAWQGQPVDLTVTEFWMLHALVQHPGHVRSREQL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 A + D +N V SHI ++R+K FD + + +GY WN Sbjct: 185 MEAASTVLD----DNTVTSHIKRIRRKFSQLDDQFDGIQTAYGMGYR--WN 229 >gi|332982066|ref|YP_004463507.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699744|gb|AEE96685.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 228 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 4/148 (2%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G+ ++ R IR S +P+I ++ + + G DD V KP +E++ARV A+ Sbjct: 60 GKDGWDICREIRRMSDIPIIMLTAKSETFDKVLGLELGADDYVVKPFDPKELIARVKAVL 119 Query: 117 RRLKVSN--NRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR N N P V + + Q + LP +E +L +L ++ K + Q+ Sbjct: 120 RRYNQDNDANNVIVYPNLVIDKNTMLVKYQKKELELPPKEFELLYFLASHPNKVYTREQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G FD + V+ H+++LR+K+ Sbjct: 180 LEQVWG-FDYYGDSRTVDVHVNRLREKI 206 >gi|329847401|ref|ZP_08262429.1| response regulator [Asticcacaulis biprosthecum C19] gi|328842464|gb|EGF92033.1| response regulator [Asticcacaulis biprosthecum C19] Length = 228 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 22/173 (12%) Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E RI+R P+I ++ S T+ D+G +D V KP +LAR+ A R + Sbjct: 66 EACRILRKGGLTTPVIMLTGQTSDSDTILGLDAGANDYVTKPFRFAVLLARIRAQVRSHE 125 Query: 121 VSNNRA-ETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S + GP ++V D + + L +E IL+YL GK +++ ++ Sbjct: 126 TSEDATFRIGPYEFKPALKVLVDQTQKKTR-----LTEKETNILKYLYRAGGKPISREEL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL----GYSIDW 222 + ++G ++ V + +E+H+ +LR+K+ DP +++ + GY + + Sbjct: 181 LTEVWG-YNAGVTTHTLETHVYRLRQKIEP----DPANARLLMTDAGGYRLQF 228 >gi|323488492|ref|ZP_08093736.1| OmpR family DNA-binding response regulator [Planococcus donghaensis MPA1U2] gi|323397709|gb|EGA90511.1| OmpR family DNA-binding response regulator [Planococcus donghaensis MPA1U2] Length = 224 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 5/134 (3%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVF 147 D+G DD + KP E+ AR+ A+ RR + + R ET G + + Q E Sbjct: 92 LDAGADDYIVKPFEIEELWARLNALTRRTR-TPIREETVMIGELLLNRTSHTLYYQEEEI 150 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L RE ++ E L+ NRG+ + + I I+GL D V +++ + LRKK+ Sbjct: 151 LLTPREFQLFELLVVNRGQVLTRELILDRIWGL-DAEVSLKTIDATVKLLRKKISRTSKE 209 Query: 208 DPVDSKRFLGYSID 221 + + + R +GY I+ Sbjct: 210 EFIKAVRGVGYKIE 223 >gi|226310855|ref|YP_002770749.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093803|dbj|BAH42245.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 229 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 19/201 (9%) Query: 34 FEEWLQSSAREDVSAIEAFLIGKGEKVL-----------ELPRIIRAHSQVPLIGISDYP 82 +E W SA + + A+E F K + VL E+ + IR S P+I ++ Sbjct: 26 YEVW---SANDGLEAMELFDEKKPDLVLLDVMLPERNGWEILQYIREKSSCPVIIMTALG 82 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDGRD 139 L + G DD + KP E++ARV A+ RR + ET G +++ Sbjct: 83 QTDQKLKGLNQGADDYITKPFVADEVVARVNAVLRRSVILVKDQETRLFGSLKINFQSHH 142 Query: 140 PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRK 199 + G R+ +L +L N + + Q+ ++G+ D + V+ I ++RK Sbjct: 143 VTLHGLELTFHPRDLSLLLFLAQNPNQTFTREQLIEQVWGM-DYGGSDRAVDLAIKRVRK 201 Query: 200 KLRN-KLGFDPVDSKRFLGYS 219 L N + + ++R +GY Sbjct: 202 TLENWPVQEGEIKTQRGVGYQ 222 >gi|251798473|ref|YP_003013204.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546099|gb|ACT03118.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 14/201 (6%) Query: 13 DGYIALFGDDGVSLEGFNS---LEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 D YIA D +L G+ + + ++ L+ + D I + G E+ + IR Sbjct: 10 DPYIAELQKDYFALHGYEAEICHDGQDGLKQALSGDYDLIILDIQLPGMSGFEICKTIRE 69 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI---YRRLKVSNNRA 126 VP++ +S + F G DD V KP E++AR A Y R K + Sbjct: 70 RLDVPILIVSAKNEELDKIRGFGFGADDFVTKPFSPNELVARAKAHLARYERFKSGQKIS 129 Query: 127 ETGPIRVFSDGRDPEV------QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +R+ +P + EVF L +E +L ++ N + +K Q+F I+GL Sbjct: 130 PDDSLRIRELTINPSSHRVFVHEQEVF-LTAKEFEVLVFMATNPNRVFSKDQLFEKIWGL 188 Query: 181 FDEAVEENVVESHISKLRKKL 201 D + V HIS++R+KL Sbjct: 189 -DSNGDIATVTVHISRIREKL 208 >gi|167551081|ref|ZP_02344836.1| response regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324105|gb|EDZ11944.1| response regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 240 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 6/155 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S +P++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLK----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K + AE+ P+ + G+ L E R+L+ L K Sbjct: 122 KTILRRCKPQRELQQQDAES-PLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPSKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 ++ Q+ + +Y + V + ++SHI LR+KL + Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKLES 214 >gi|241518236|ref|YP_002978864.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862649|gb|ACS60313.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 219 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 14/159 (8%) Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 + E L L R IRA S +P+I + L F+SG DD ++ P RE++AR+ ++ Sbjct: 40 RAEDALRLCRQIRAVSTIPIIAVVAQGREDIILAAFESGADDCISSPFGTREMIARIRSV 99 Query: 116 YRRLKVSNNR---AETGPIRVFSDGRDPEVQ-------GEVFPLPRRERRILEYLMANRG 165 RR S +R + + P R F+ R Q G V + E +L N G Sbjct: 100 LRR--ASRDRVIHSLSKPFR-FNGWRLDSWQRALRRPDGTVVDVTAAEFDLLVVFCQNPG 156 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 + +++ ++ ++ + +E + ++ HIS+LR K+ + Sbjct: 157 RILSREELLASTHAGLAGPIERS-IDVHISRLRHKIEDN 194 >gi|160944474|ref|ZP_02091702.1| hypothetical protein FAEPRAM212_01984 [Faecalibacterium prausnitzii M21/2] gi|158444256|gb|EDP21260.1| hypothetical protein FAEPRAM212_01984 [Faecalibacterium prausnitzii M21/2] Length = 223 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 83/171 (48%), Gaps = 13/171 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDS---GVDDVVNKPIHHREILARVA 113 GE L IR S+VP+I ++ S T +D +S G D + KP + +LA++A Sbjct: 59 GENGFALCSKIRTFSEVPIIFVT---SCNTDMDELNSIMLGGDAFITKPYNTAILLAKIA 115 Query: 114 AIYRRLKVSNNRAET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ ++ + R + G + + + G L + E +IL YL N GK ++ Sbjct: 116 SLLKKTYPAQQREKIVYGDAVLHLESSSLDYNGRSVELTKNELKILYYLFKNGGKICSRG 175 Query: 172 QIFSAIYGLFDEA--VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I I L+D V++N + +I+++R+KL D + +K GY+I Sbjct: 176 DI---IEYLWDNQLYVDDNALSVNINRIREKLAGIGLTDFIKTKHRQGYTI 223 >gi|21241531|ref|NP_641113.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106880|gb|AAM35649.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 238 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 25/173 (14%) Query: 51 AFLIGKGEKVL------------ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98 A L G+G +++ E+ R IR S VP+I ++ + D+G +D Sbjct: 48 ALLAGQGAELVVLDIGLPDRDGHEVLREIRQWSNVPVIMLTVRAGETEKVAALDAGANDY 107 Query: 99 VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLP 150 V KP +E++AR+ ++ R+ + E+ VF DG R+ + GE PL Sbjct: 108 VTKPFGVQELMARIRSLLRQAGAGSTVEES----VFDDGRLHIHLGLREVTLDGEAVPLS 163 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 R+E +L L+ + G+ V + Q+ ++G E + + + + KLR+KL + Sbjct: 164 RKEYALLALLLKHAGRVVTQPQLLREVWGPTHEE-DTHYLRILVGKLRQKLHD 215 >gi|83747530|ref|ZP_00944568.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551] gi|207721816|ref|YP_002252254.1| response regulator protein [Ralstonia solanacearum MolK2] gi|207744492|ref|YP_002260884.1| response regulator protein [Ralstonia solanacearum IPO1609] gi|83725844|gb|EAP72984.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551] gi|206586982|emb|CAQ17566.1| response regulator protein [Ralstonia solanacearum MolK2] gi|206595898|emb|CAQ62825.1| response regulator protein [Ralstonia solanacearum IPO1609] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 28/222 (12%) Query: 8 RALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSS--AREDVSAIEAFLIGKGEKVLELP 64 RAL + ++ DG++ E F S EF+ + R+D A+ A + + ++ Sbjct: 18 RALAQSSFVVERAADGLAAEAFLASGEFDAVVLDLRLPRKDGFAVLADMRARDDRT---- 73 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 P++ ++ +L + ++G DD + KP E+ AR+ A+ RR S Sbjct: 74 ---------PVLILTAQGALDERVRGLNAGADDFLTKPFAMSELEARLMALIRR---SRG 121 Query: 125 RA----ETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 RA GP+ F GR + GE L RE L L+ G+ ++K +F ++ Sbjct: 122 RAFPRLRCGPLE-FDTGRKAFLLAGEALSLTPREHAALSALLHKTGQPISKVHLFDKVFN 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 L D + VE + +LRKKL G V + R LGY ++ Sbjct: 181 L-DSDSSPDAVEVVVHRLRKKLAGS-GVQIV-TVRGLGYLLE 219 >gi|332686791|ref|YP_004456565.1| two-component response regulator [Melissococcus plutonius ATCC 35311] gi|332370800|dbj|BAK21756.1| two-component response regulator [Melissococcus plutonius ATCC 35311] Length = 229 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 19/201 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 LVK+GY E + + + EE L+ + + L+ LE+ R IR Sbjct: 17 LVKEGY-----------EVYTAFDGEEALEKVTEVEPDLVLLDLMLPKMDGLEVAREIRK 65 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-----NN 124 +P+I ++ S + + G DD V KP +RE++ARV A RR S N Sbjct: 66 TYNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRREASSVKEEAGN 125 Query: 125 RAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++E G + + D GE L RE +L YL + G+ + + + ++G +D Sbjct: 126 QSELTIGDLTIHPDAYMVSKAGENIELTHREFELLYYLARHLGQVMTREHLLQTVWG-YD 184 Query: 183 EAVEENVVESHISKLRKKLRN 203 + V+ + +LR+K+ + Sbjct: 185 YFGDVRTVDVTVRRLREKIED 205 >gi|294630664|ref|ZP_06709224.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292833997|gb|EFF92346.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 233 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 98/226 (43%), Gaps = 31/226 (13%) Query: 9 ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 AL +DG+ DG+S LE F + R D++ ++ + G + L R I Sbjct: 23 ALERDGFAVTAMPDGLSGLEAFRA----------DRPDIALLDVMV--PGLDGVSLCRRI 70 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------- 119 R S VP+I +S + ++G DD V KP ++AR+ A+ RR Sbjct: 71 RDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHAGGARA 130 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +V G + V +DG + G L E R+L + G +++ ++ Sbjct: 131 AADSGEVDGGVLTFGDLEVDTDGMEVRRAGRPVALTPTEMRLLLEFSSAPGTVLSRDKLL 190 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + + VV+ H+ ++LR K+G D +++ R GY + Sbjct: 191 ERVWD-YGWGGDTRVVDVHV----QRLRTKIGQDRIETVRGFGYKL 231 >gi|293604231|ref|ZP_06686639.1| two component response regulator [Achromobacter piechaudii ATCC 43553] gi|292817456|gb|EFF76529.1| two component response regulator [Achromobacter piechaudii ATCC 43553] Length = 219 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 12/134 (8%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146 D+G DD + KP E+LAR+ A+ RR S RAE I + V G Sbjct: 91 LDAGADDYIVKPYDVDELLARMRALIRR---SAGRAEPVFEHEGITIDPQAHAAMVDGTP 147 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L RE +LE L+A G ++ Q+ +Y + ++V N VE +I LRK KLG Sbjct: 148 VALTAREWAVLEPLIARPGMIFSRAQLEEKLYS-WKDSVSSNAVEVYIHGLRK----KLG 202 Query: 207 FDPVDSKRFLGYSI 220 + + + R +GY I Sbjct: 203 PNLIQNVRGVGYVI 216 >gi|238059052|ref|ZP_04603761.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237880863|gb|EEP69691.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 231 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 5/144 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R++RA S VP+I + + D+G DD V KP ++ AR+ A+ RR Sbjct: 62 ELLRMLRAVSAVPVIVATARDDETEIVRVLDAGADDYVVKPFTAAQLDARIRAVLRRGAA 121 Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G +RV R + G L RE +L +L A G+ V K ++ + + Sbjct: 122 GAGAGDPALVVGGLRVDPRARQVTLDGVAVELTPREFDLLHHLAARPGEVVTKRELLTEV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 + + ++ V+ H+S LR+KL Sbjct: 182 WQIPYGGADKT-VDVHLSWLRRKL 204 >gi|229161461|ref|ZP_04289442.1| Sensor histidine kinase [Bacillus cereus R309803] gi|228621998|gb|EEK78843.1| Sensor histidine kinase [Bacillus cereus R309803] Length = 231 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 13/207 (6%) Query: 27 EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+N + + +E LQ +V + ++ LE+ + +R ++ VP++ +S Sbjct: 25 EGYNIYKAYDGDEALQMLCTYEVDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAETGPIR-----VFS 135 + +G DD + KP + E++ARV A+ RR NN + E G IR + Sbjct: 85 DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNNATQKKEDGIIRIRAAEIHK 144 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 +V E L E IL L +N G+ + +IF ++ D V HIS Sbjct: 145 HNHTLKVNNEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 203 Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221 LR KL + G + + +GY I+ Sbjct: 204 NLRDKLETVMNGEKFIHTVWGVGYKIE 230 >gi|149377685|ref|ZP_01895421.1| Phosphate regulon transcriptional regulatory protein phoB [Marinobacter algicola DG893] gi|149358038|gb|EDM46524.1| Phosphate regulon transcriptional regulatory protein phoB [Marinobacter algicola DG893] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 12/156 (7%) Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ A +++P+I ++ + + G DD + KP RE++AR+ Sbjct: 59 GTSGVELARRLKKEEATAEIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR + ET PI V DP + + E R+L++ M ++ + Sbjct: 119 AVLRR--TTPPGVET-PIEVDGLTLDPVGHRVTTETGALNIGPTEYRLLQFFMTHQERVY 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 ++Q+ ++G + VEE V+ HI +LRK L ++ Sbjct: 176 TRSQLLDQVWG-GNVYVEERTVDVHIRRLRKALGDQ 210 >gi|33355848|gb|AAQ16268.1| response regulator [Enterococcus faecalis] gi|77380195|gb|ABA71727.1| VanRG [Enterococcus faecalis] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 28/148 (18%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRD------------PE 141 G DD + KP + E+ ARV RR NN A+ V D Sbjct: 95 GADDYITKPFNPLEVAARVKTQLRRYVCYNNAADIEKENVLVTEYDINGLVINKNTHKCT 154 Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--LFDEAVEENVVESHISKLRK 199 + G+ L E +L YL NRGK ++ ++F ++G D N V +HI +LR+ Sbjct: 155 LYGKAVTLTPIEFSVLWYLCENRGKVISSEELFENVWGEKFLD---NNNTVMAHIGRLRE 211 Query: 200 KLRNKLGFDPVDSKRFL------GYSID 221 KL+ +P + +F+ GY+I+ Sbjct: 212 KLK-----EPARNPKFIKTVWGVGYTIE 234 >gi|58580728|ref|YP_199744.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425322|gb|AAW74359.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 297 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 12/135 (8%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 P++ ++ ++ + D G DD + KP RE AR + RR NR + + Sbjct: 137 TPVLMLTARDGIEDRVQALDVGADDYLGKPFDFREFEARCRVLLRR-----NRGQASEVV 191 Query: 133 -----VFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 VF + + G LP RE R+ + L+ G+ V K +I + ++G FD+ Sbjct: 192 QIGGFVFDNAAHTLTLDGVPIELPNREYRLFDILIGRLGRVVGKDEIGNGLFG-FDDDAG 250 Query: 187 ENVVESHISKLRKKL 201 N +E ++ +LR+KL Sbjct: 251 PNAIELYVGRLRRKL 265 >gi|134300813|ref|YP_001114309.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053513|gb|ABO51484.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 229 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 9/142 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I ++ + + G DD + KP RE++AR+ A+ RR V Sbjct: 69 IRKVSKVPIIMLTAKNDEVDRILGLEFGADDYMGKPFSPRELVARIKAVLRR--VGTEEK 126 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + F R+ V+ + L +E +L L + G+ ++ Q+ ++G Sbjct: 127 KEGHLLKFPGMCMDLISREVLVKDKPITLTPKEFELLALLAKSTGRSYSREQLLEEVWG- 185 Query: 181 FDEAVEENVVESHISKLRKKLR 202 FD + V++H+++LR KLR Sbjct: 186 FDYYGDVRTVDTHVNRLRDKLR 207 >gi|163846512|ref|YP_001634556.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524297|ref|YP_002568768.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163667801|gb|ABY34167.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448176|gb|ACM52442.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 227 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 72/138 (52%), Gaps = 5/138 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ ++ + + + G DD V KP ++ E+LAR+ A+ RR+ +N Sbjct: 70 VREFASLPILMLTARTMPEDIITGLNQGADDYVIKPFNYDELLARIRALLRRVPATNRPL 129 Query: 127 ETGPIRVFSDGRDPE--VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 G + D R E V+GE+ L E ++L L + G+ V Q+ A++G E Sbjct: 130 TVGNNLISIDQRKREVRVRGELVDLTPTEYQLLLVLAEHAGEVVTHEQLLRAVWG--SEP 187 Query: 185 VEEN-VVESHISKLRKKL 201 + +N ++ +I LR+K+ Sbjct: 188 MRDNDYLKVYIWHLRRKI 205 >gi|320527693|ref|ZP_08028865.1| response regulator receiver domain protein [Solobacterium moorei F0204] gi|320131936|gb|EFW24494.1| response regulator receiver domain protein [Solobacterium moorei F0204] Length = 222 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 13/206 (6%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE---LPRIIRAHSQVPLIGISD 80 + GF + E E L + + + + ++ VL+ + I++ QVP+I +S Sbjct: 21 CEINGFETEEAENGLVAIEKVKNTHFDCVILDVMMPVLDGFSTCKQIKSIDQVPVIMLSA 80 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET---GPIRVFSDG 137 L F+ GVDD V KP +E++AR+ + R K + ++ +++ G Sbjct: 81 RQEEYDKLFGFELGVDDYVTKPFSPKELIARIKVVLERGKKTQANSDVMIFKGLQIDVLG 140 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 R V GE PL +E +L YL + +++ + ++ +D ++ V++HI Sbjct: 141 RVVTVDGEKAPLTPKEIDLLLYLATHPNVALSRETLLVEVWN-YDYFGDDRTVDTHI--- 196 Query: 198 RKKLRNKLG--FDPVDSKRFLGYSID 221 K LR+ LG D + + R +GY + Sbjct: 197 -KMLRHNLGPYRDFITTVRGMGYKFE 221 >gi|305675621|ref|YP_003867293.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|305413865|gb|ADM38984.1| two-component response regulator controlling resistance to antibiotics affecting the envelope (YtsB) [Bacillus subtilis subsp. spizizenii str. W23] Length = 231 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 15/146 (10%) Query: 65 RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R+IR+ S VP++ +S D+P+ + G DD + KP H ++A++ AI+RR V Sbjct: 65 RLIRSRSNVPILFLSSRDHPA--DMVMSMQLGADDFIQKPFHFDVLIAKIQAIFRR--VH 120 Query: 123 NNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E I+ + Q V L + E IL+ L+ + K V++ ++ + Sbjct: 121 HYNTEPSTIKTWCGAAIDAEQNLVSNDEGSVELTKNEMFILKQLIEQKNKIVSREELIRS 180 Query: 177 IYGLFDEA-VEENVVESHISKLRKKL 201 ++ DE V +N + ++++LRKKL Sbjct: 181 LWN--DERFVSDNTLTVNVNRLRKKL 204 >gi|295426129|ref|ZP_06818796.1| response regulator [Lactobacillus amylolyticus DSM 11664] gi|295064165|gb|EFG55106.1| response regulator [Lactobacillus amylolyticus DSM 11664] Length = 228 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 10/169 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 +E+ + +R S +P+I +S S + +G DD V+KP + E++ARV ++ RR Sbjct: 61 IEVIKEVRKDSDIPIIVVSAKTSDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQ 120 Query: 120 -KVSNNRA---ETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173 +V + + E GP+ + D + + + G+ L E IL YL+A+ RV + +I Sbjct: 121 KQVKDEKPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGIL-YLLASHPNRVFSADEI 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 F ++ + V V H+S LR K++ G D + + +GY ++ Sbjct: 180 FERVWQQ-ESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227 >gi|294497050|ref|YP_003560750.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294346987|gb|ADE67316.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 225 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 1/140 (0%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ + +I ++ S++ + D G DD + KP E+ AR+ + R L+ Sbjct: 63 LKKLRKQKVLTKVIFLTAKDSVEDRVKGLDYGADDYLVKPFAMAELFARLRVMLRDLQAE 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 GPI + + + G L +E ++LEY + N+ + + + QIF+ ++G F Sbjct: 123 EGMISYGPISIREANHEVMINGSALTLTIKEFQLLEYFIRNKEQILIRDQIFNRVWG-FT 181 Query: 183 EAVEENVVESHISKLRKKLR 202 V VV+ ++ LRKKL+ Sbjct: 182 SDVGVGVVDVYVHHLRKKLQ 201 >gi|293603732|ref|ZP_06686151.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] gi|292817906|gb|EFF76968.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] Length = 228 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 72/150 (48%), Gaps = 5/150 (3%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G VL+ R A + +P++ ++ ++ + ++G DD + KP+ RE+LAR++A Sbjct: 57 ASGLAVLKWARCNLA-ATLPILMLTQRDDEESIVQALNTGADDYLQKPVRERELLARMSA 115 Query: 115 IYRRLK---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R+ + V+ + + G D + V G LP RE + L + G+ + K Sbjct: 116 QLRKSQRGDVNPGQFQVGHFAFNLDAKTLTVDGRPVSLPTREFDVATMLFRSPGRIITKD 175 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + I+G D + ++ +++S LR L Sbjct: 176 ALCQHIWGTVDRKYDASLA-TYVSNLRSSL 204 >gi|257092042|ref|YP_003165683.1| winged helix family two component transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044566|gb|ACV33754.1| two component transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 226 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 4/162 (2%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +RA +S P++ ++ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LDVLRRLRARNSSTPILILTALDGTDDRVKGLDLGADDYMAKPFELAELEARVRALSRRS 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + G + R V GE+ L RE +LE L+ + V+K Q+ + G Sbjct: 120 SGTSRMIQCGSLTFDQTDRCALVNGEMLDLSARELGLLEILLLRAKRLVSKDQLVDHLCG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E ++ +LRKKL G + + + R LGY ++ Sbjct: 180 -WGEEVSHNAIEVYVHRLRKKL-EATGVNII-TVRGLGYYLE 218 >gi|261404482|ref|YP_003240723.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280945|gb|ACX62916.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 224 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 24/184 (13%) Query: 46 VSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH 105 + ++ F +G+ R+ +A+ +P++ +S S+ L + DD + KP H Sbjct: 54 LPGLDGFTVGQ--------RLKKAYPGLPILMLSARTSIDDKLQGLEFA-DDYLTKPFHP 104 Query: 106 REILARVAAIYRRLKVSNNRAETGPIRV--FSDGRDP-----EVQGEVFPLPRRERRILE 158 E+ AR+ + RR V + PIRV S D E GE L ++ +I Sbjct: 105 DELAARLEVLLRRSVVKSAE----PIRVKHLSVYEDENRIVNEDTGEETLLTGKQHQIFM 160 Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVE-ENVVESHISKLRKKL-RNKLGFDPVDSKRFL 216 YL+ ++G+ + K QI+ +++G + +E + + HI LR+KL R+ + +++ R L Sbjct: 161 YLLQHQGRVMTKEQIYESVWG--ESYIEGDKTLMVHIRYLREKLERDPANPEIIETVRGL 218 Query: 217 GYSI 220 GY + Sbjct: 219 GYRV 222 >gi|206969522|ref|ZP_03230476.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206735210|gb|EDZ52378.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 125 SAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225 >gi|167038191|ref|YP_001665769.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039100|ref|YP_001662085.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|256750939|ref|ZP_05491823.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|300913310|ref|ZP_07130627.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307723676|ref|YP_003903427.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|320116600|ref|YP_004186759.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853340|gb|ABY91749.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|166857025|gb|ABY95433.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750274|gb|EEU63294.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|300889995|gb|EFK85140.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307580737|gb|ADN54136.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] gi|319929691|gb|ADV80376.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 225 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 5/143 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S +P+I ++ + + G DD + KP + RE+ AR+ A+ RR Sbjct: 65 REIRTFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELTARIRALLRRATNPYT 124 Query: 125 RAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G + + R +G+ L +E IL L +N GK K ++ I+G Sbjct: 125 KRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLIWG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRN 203 FD + N V H+ KLR+K+ + Sbjct: 184 FDFYGDTNTVTVHVRKLREKIED 206 >gi|302530063|ref|ZP_07282405.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302438958|gb|EFL10774.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/160 (30%), Positives = 76/160 (47%), Gaps = 6/160 (3%) Query: 45 DVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 DV ++ L G G +VLE R + V L+ D Q D D G D + KP Sbjct: 51 DVVLLDIMLPGLSGYRVLERLRAENVTTPVLLVSAKDGEIDQA--DGLDLGADGYLVKPF 108 Query: 104 HHREILARVAAIYRRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161 ++A+V A+ RR +R + G + V R G+ PL RE +LE L+ Sbjct: 109 SFVVLVAQVRAVLRRAGPDASRGALKLGALEVDRALRQVRWDGQEVPLSPREFGLLEVLV 168 Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 G V K ++ A++G ++AV N+VE ++ +R+KL Sbjct: 169 GRAGTVVTKDELLRAVWG-EEQAVTRNLVEVYVGYVRRKL 207 >gi|300780471|ref|ZP_07090327.1| response regulator [Corynebacterium genitalium ATCC 33030] gi|300534581|gb|EFK55640.1| response regulator [Corynebacterium genitalium ATCC 33030] Length = 239 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 6/113 (5%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR-----VFSDGRDPEVQGEVFP 148 G DD V KP E++ R+ I RR V+ IR + D + GE+ Sbjct: 103 GADDYVTKPFSLEEVITRLRVILRRGNVTETETGDSTIRYADLTLNDDTHEVTKAGEIVE 162 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L E +L YLM N ++K +I ++ +D + NVVES+IS LR+K+ Sbjct: 163 LSPTEFNLLRYLMLNAEVVLSKAKILDNVWH-YDFGGDGNVVESYISYLRRKV 214 >gi|197295461|ref|YP_002154002.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|195944940|emb|CAR57552.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 239 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 22/198 (11%) Query: 27 EGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQ 85 EG LE W A+ L+ G LE+ R RA ++ P+I S S Sbjct: 39 EGLRLLEQGGW---------DALILDLMLPGVDGLEICRRARAMTRYTPIIITSARSSEV 89 Query: 86 TTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPIRVFSDGRDP--- 140 + + G DD + KP E++ARV A+ RR+ ++R + G + V DP Sbjct: 90 HRILGLELGADDYLAKPFSVLELVARVKALLRRVDALARDSRLDAGTLDVAGLAIDPIAR 149 Query: 141 --EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLR 198 V G L RE +L + + GK ++ + +A++G E E+ V +HI++LR Sbjct: 150 EASVDGARIDLTPREFDLLYFFARHPGKVFSRMDLLNAVWGYQHEGY-EHTVNTHINRLR 208 Query: 199 KKLRNKLGFDPVDSKRFL 216 K+ DP + R L Sbjct: 209 AKIEA----DPAEPVRIL 222 >gi|170017613|ref|YP_001728532.1| response regulator [Leuconostoc citreum KM20] gi|169804470|gb|ACA83088.1| Response regulator [Leuconostoc citreum KM20] Length = 229 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 8/134 (5%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPIR----VFSDGRDPEVQ-GEVF 147 G DD + KP RE++ARV A+ RR +V + AE+ I+ V D + + ++ Sbjct: 95 GADDYITKPFSPREVVARVKAVLRRSQVDHQVVAESDVIKVQNVVIDDNKKVVTRDNQIL 154 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLG 206 L RE +L Y G+ + + I +A++G ++ E +V+ HIS LR+K+ N Sbjct: 155 TLTPREYELLLYFAHRIGRVIDRETILTAVWG-YEFTGESRMVDMHISNLREKIETNPKS 213 Query: 207 FDPVDSKRFLGYSI 220 + + R GY++ Sbjct: 214 PQLLKTVRGFGYTL 227 >gi|29831247|ref|NP_825881.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|81838270|sp|Q82EB1|CSEB_STRAW RecName: Full=Transcriptional regulatory protein CseB gi|29608362|dbj|BAC72416.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 33/228 (14%) Query: 9 ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 AL +DG+ DG+S LE F + R D++ ++ + G + L R I Sbjct: 23 ALERDGFAVTAMPDGLSGLEAFRA----------NRPDIALLDVMV--PGLDGVSLCRRI 70 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------- 119 R S VP+I +S + ++G DD V KP ++AR+ A+ RR Sbjct: 71 RDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHASGPNS 130 Query: 120 -KVSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ A G + F ++G + G+ L E R+L + G +++ + Sbjct: 131 RPAEDSSAPDGGVLTFGELEIDTEGMEVRRSGQPVALTPTEMRLLLEFSSAPGTVLSRDK 190 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ + + VV+ H+ ++LR K+G D +D+ R GY + Sbjct: 191 LLERVWD-YGWGGDTRVVDVHV----QRLRTKIGQDRIDTVRGFGYKL 233 >gi|2293270|gb|AAC00348.1| signal transduction regulator [Bacillus subtilis] Length = 240 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 15/141 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-----------GPIRVFSDGRDPEV 142 G DD + KP RE+ ARV AI RR ++ +E G +++ D + Sbjct: 96 GADDYMTKPFSPREVNARVKAILRRSEIRAPSSEMKNDEMEGQIVIGDLKILPDHYEAYF 155 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + L +E +L YL ++G+ + + + SA++ +D A + +V+ HIS LR K+ Sbjct: 156 KESQLELTPKEFELLLYLGRHKGRVLTRDLLLSAVWN-YDFAGDTRIVDVHISHLRDKIE 214 Query: 203 NKLGFDPVDSK--RFLGYSID 221 N P+ K R LGY ++ Sbjct: 215 NNTK-KPIYIKTIRGLGYKLE 234 >gi|310642107|ref|YP_003946865.1| response regulator (chey-like receiver domain and hth-type DNA-binding domain) [Paenibacillus polymyxa SC2] gi|309247057|gb|ADO56624.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Paenibacillus polymyxa SC2] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 20/213 (9%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKG 57 + V+ DD+ +VK +S EGF ++ +E L + + I ++ G Sbjct: 5 ILVVDDDKDIVK------LITKSLSYEGFETIPAYSGKEALCALKENHIDFIILDIMMPG 58 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 L++ R IR P++ +S + + G DD + KP +E+ +R+ A +R Sbjct: 59 MNGLDVCRSIRNSYNAPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANFR 118 Query: 118 RL--------KVSNNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168 ++ ++S NR T + +D + + L +E +IL LM N + Sbjct: 119 KVDRLLKEWNELSPNRERTDSPLILNDKTFEAFLNNRKLNLSTKEFQILSMLMHNPNNVL 178 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + +I+ ++G DE E N V HI +RKKL Sbjct: 179 TRERIYEYVWG--DEYGELNTVTVHIKNIRKKL 209 >gi|302670905|ref|YP_003830865.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302395378|gb|ADL34283.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 232 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 15/172 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 + L + +R S +P+I +S + + G DD + KP + E++ARV + RR Sbjct: 61 IRLVKEVRRFSTIPVIFLSAKSEDADKILGLNIGADDYITKPFNPLELIARVKSNLRRYT 120 Query: 120 ----KVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +V+N+ T G + + + ++ V GE L E IL +L+ N+GK + QI+ Sbjct: 121 TLGSEVTNDNVYTVGGLVIDDNSKECFVFGENIKLTPVEYNILCFLVKNKGKVYSIEQIY 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221 I+ +N + HI +R+K+ +P D K +GY I+ Sbjct: 181 EHIWNESVGGRSDNTIAVHIRHIREKIE----INPKDPKFLKVVWGVGYKIE 228 >gi|229147642|ref|ZP_04275986.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228635851|gb|EEK92337.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] Length = 223 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 7/161 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S+VP+I +S + + + G DD + KP + ++A++ A+ RR S Sbjct: 64 RKIREVSKVPIIFLSSRDNPMDMVMAMNMGGDDFMQKPFYTDVLVAKIQALMRR-TYSYT 122 Query: 125 RAETGPIR---VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ET + V + + EV ++ L + E +IL+ LM N G V++ I ++ Sbjct: 123 QTETNVVEYEGVLLNLQSGEVTYHNQILELTKNEFKILQILMQNIGSIVSRDNIMRKLWE 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + V++N + +++++RKKL + + +K+ GY I Sbjct: 183 -NESFVDDNTLTVNVARVRKKLAELGKEEFIHTKKGQGYII 222 >gi|229163529|ref|ZP_04291479.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus R309803] gi|228619911|gb|EEK76787.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus R309803] gi|324328428|gb|ADY23688.1| two-component response regulator ycbL [Bacillus thuringiensis serovar finitimus YBT-020] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 LE+ RIIR S VP++ +S + G DD + KP E+ ARV A I R Sbjct: 62 LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K S I++ DP E G+ L +E IL+ + N+ + K QI+ Sbjct: 122 KYSATEETEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++ + ++NV+ H+ +LR+K+ + Sbjct: 182 TLVWN-EEYYGDDNVINVHMRRLREKIES 209 >gi|209517424|ref|ZP_03266266.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209502191|gb|EEA02205.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 224 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 6/151 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETG 129 S+VP++ ++ L + D G DD V KP H E+LAR+ A+ RR +++R Sbjct: 71 SKVPILILTARDDLDARVQGLDFGADDYVLKPFHLPELLARIRAVLRRKAGFASSRLGND 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + D R G L RE ++ + G +++ Q+ +YG + + VE N Sbjct: 131 TLNLDLDKRTLCCNGVSSVLSAREFALMFAFLERPGTILSRDQLEGKLYG-WGKEVESNA 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+ I +RK K G + + R LG+++ Sbjct: 190 VDVLIHGVRK----KFGQSVIRNVRGLGWTV 216 >gi|206975972|ref|ZP_03236882.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217961929|ref|YP_002340499.1| DNA-binding response regulator [Bacillus cereus AH187] gi|206745724|gb|EDZ57121.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217066754|gb|ACJ81004.1| DNA-binding response regulator [Bacillus cereus AH187] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 125 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQADQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225 >gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans] gi|133738246|emb|CAL61291.1| Phosphate regulon transcriptional regulatory protein PhoB [Herminiimonas arsenicoxydans] Length = 229 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 7/167 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G ++L R R +++P+I ++ + + D+G DD V KP RE+ AR+ A+ Sbjct: 64 GLRLLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALL 123 Query: 117 RRLKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR + + G I + + E + E ++L++ +A+ + +++Q+ Sbjct: 124 RRKTPEHAQTLMTAGSISLDPISCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRSQLL 183 Query: 175 SAIYGLFDEAV-EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V EE V+ H+ +LRK L+ + + R +GY + Sbjct: 184 DKVWG--DHVVIEERTVDVHVLRLRKALKEAEHL--IKTVRSVGYML 226 >gi|159038626|ref|YP_001537879.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157917461|gb|ABV98888.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 7/167 (4%) Query: 41 SAREDVSAIEAF-LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV 99 +ARED + L+ G +E+ R +R S +I ++ L G DD + Sbjct: 41 AAREDEPDVVVLDLMLPGLDGVEVCRRLRTFSDCYVIMLTARTEEADKLTGLGVGADDYL 100 Query: 100 NKPIHHREILARVAAIYRRLKVSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRER 154 KP RE++ARVAA+ RR + R E GP+ V R+ + G PL R E Sbjct: 101 TKPFSPRELVARVAAMQRRPRQPRGRPEPAPRRFGPLEVDVPAREARLDGAPVPLTRTEF 160 Query: 155 RILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 +L L A +++ ++ +A++G +E++V+ HI LR+KL Sbjct: 161 DLLAVLSARPNVVLSRAELITAVWG-EGWVGDEHLVDVHIGHLRRKL 206 >gi|56964476|ref|YP_176207.1| two-component response regulator of alkaline phosphatase synthesis [Bacillus clausii KSM-K16] gi|56910719|dbj|BAD65246.1| two-component response regulator of alkaline phosphatase synthesis [Bacillus clausii KSM-K16] Length = 240 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 13/140 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAETGP------IRVFSDGRDPEV 142 G DD + KP RE+ ARV AI RR++ V+ N G + ++ + V Sbjct: 96 GADDYMTKPFSPREVTARVRAILRRIEQTGGAVAKNEQGKGKSIQIADLTIYPQNYEVYV 155 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + E+ L +E +L YL ++G+ + + Q+ +A++ ++ + +V+ HIS LR K+ Sbjct: 156 KKELLTLTPKEFELLVYLADHKGRVLTRDQLLNAVWN-YEFVGDTRIVDVHISHLRDKIE 214 Query: 203 -NKLGFDPVDSKRFLGYSID 221 N + + R LGY ++ Sbjct: 215 PNSKKPVYIKTIRGLGYKLE 234 >gi|331017288|gb|EGH97344.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 222 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 24/227 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D + D +A G G +++ + +S D+ ++ L G G +V Sbjct: 3 LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 L+ R P++ ++ S ++ +G DD + KP H E+ R+ A+ RR Sbjct: 63 LQ--RWRGKGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L+ + + G V DG D ++ F R+L Y M + G+ ++K+ Sbjct: 121 GMANQPTLESAGLNLDEGRQCVSRDGTDIQLTSAEF-------RLLRYFMLHPGQILSKS 173 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +Y +E + NV+E H++ LR+ KLG ++++R GY Sbjct: 174 HLSEHLYDGENER-DSNVIEVHVNHLRR----KLGRAVIETRRGQGY 215 >gi|260902480|ref|ZP_05910875.1| transcriptional activator protein CopR [Vibrio parahaemolyticus AQ4037] gi|308109776|gb|EFO47316.1| transcriptional activator protein CopR [Vibrio parahaemolyticus AQ4037] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 20/221 (9%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66 + L++ GY+ DGV +G EE+ D+ ++ L G +VL R Sbjct: 18 KGLIESGYVVDLVHDGV--DGLYHATSEEY-------DLILLDIMLPKLDGWQVLNTLRS 68 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 H+ P+I ++ ++ + F+ G +D V KP E+LARV ++R + A Sbjct: 69 SGIHT--PVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHIAAQVVA 126 Query: 127 ETGPIRVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 +RV D G+ L +E +LE LM G+ +++T I S ++ + Sbjct: 127 SPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIASLVWDMN 186 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + NV++ + +LR K+ + + R +GY ++ Sbjct: 187 FDS--DTNVIDVAVKRLRSKVDKPFDKPLIHTVRGMGYKLE 225 >gi|256851719|ref|ZP_05557107.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260661563|ref|ZP_05862475.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|282933547|ref|ZP_06338917.1| transcriptional regulatory protein WalR [Lactobacillus jensenii 208-1] gi|297205337|ref|ZP_06922733.1| response regulator [Lactobacillus jensenii JV-V16] gi|256615677|gb|EEU20866.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260547620|gb|EEX23598.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|281302290|gb|EFA94522.1| transcriptional regulatory protein WalR [Lactobacillus jensenii 208-1] gi|297149915|gb|EFH30212.1| response regulator [Lactobacillus jensenii JV-V16] Length = 237 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 12/171 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R +P+I ++ + + + G DD V KP +RE++ARV A RR Sbjct: 62 LEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRD 121 Query: 121 V----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + N G + + D E G+ L RE +L YL ++ G+ + + Sbjct: 122 IVQKQVDENENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + +G +D + V+ + +LR+K+ N + + ++R +GY + Sbjct: 182 EHLLQTAWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGYYV 231 >gi|77464845|ref|YP_354349.1| two component transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77389263|gb|ABA80448.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides 2.4.1] Length = 228 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 7/155 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R SQVP+I +S + D+G D V KP E LAR+ A+ R Sbjct: 64 IEVLRTVRGWSQVPVIVLSVRSDEAGKVAALDAGAQDYVTKPFATSEFLARIRALLRDRS 123 Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + R V G L RRE +L L + G+ V + I I+ Sbjct: 124 GPAAPSVISVAELEIDLAARRVSVSGTEVKLTRREFDLLRLLASQAGRLVTQAMILRTIW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 G A EE+ ++ ++LR KLG D D + Sbjct: 184 G---PAHEED--SQYLRVYIRQLRAKLGDDAADPR 213 >gi|28897135|ref|NP_796740.1| putative two component response regulator transcription regulator protein [Vibrio parahaemolyticus RIMD 2210633] gi|260361433|ref|ZP_05774492.1| transcriptional activator protein CopR [Vibrio parahaemolyticus K5030] gi|260878046|ref|ZP_05890401.1| transcriptional activator protein CopR [Vibrio parahaemolyticus AN-5034] gi|260896941|ref|ZP_05905437.1| transcriptional activator protein CopR [Vibrio parahaemolyticus Peru-466] gi|28805344|dbj|BAC58624.1| putative two component response regulator transcription regulator protein [Vibrio parahaemolyticus RIMD 2210633] gi|308088763|gb|EFO38458.1| transcriptional activator protein CopR [Vibrio parahaemolyticus Peru-466] gi|308089716|gb|EFO39411.1| transcriptional activator protein CopR [Vibrio parahaemolyticus AN-5034] gi|308111004|gb|EFO48544.1| transcriptional activator protein CopR [Vibrio parahaemolyticus K5030] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 20/221 (9%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66 + L++ GY+ DGV +G EE+ D+ ++ L G +VL R Sbjct: 18 KGLIESGYVVDLVHDGV--DGLYHATSEEY-------DLILLDIMLPKLDGWQVLNTLRS 68 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 H+ P+I ++ ++ + F+ G +D V KP E+LARV ++R + A Sbjct: 69 SGIHT--PVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHIAAQVVA 126 Query: 127 ETGPIRVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 +RV D G+ L +E +LE LM G+ +++T I S ++ + Sbjct: 127 SPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIASLVWDMN 186 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + NV++ + +LR K+ + + R +GY ++ Sbjct: 187 FDS--DTNVIDVAVKRLRSKVDKPFDRPLIHTVRGMGYKLE 225 >gi|26989626|ref|NP_745051.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|148547998|ref|YP_001268100.1| two component transcriptional regulator [Pseudomonas putida F1] gi|24984509|gb|AAN68515.1|AE016483_6 DNA-binding response regulator [Pseudomonas putida KT2440] gi|148512056|gb|ABQ78916.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|313499075|gb|ADR60441.1| Winged helix family two component transcriptional regulator [Pseudomonas putida BIRD-1] Length = 226 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 5/151 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAETGP 130 P++ IS + + +G DD + KP E+ ARV + RR V + R + Sbjct: 74 TPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSVPTTQTRLQVAD 133 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENV 189 +++ + L E ++LEYLM + G+ + + IF ++G FD N+ Sbjct: 134 LQLDLISHEARRGDNTLNLLPTEYKLLEYLMRHSGQVITRMMIFEEVWGYHFDPGT--NL 191 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ HI +LRKK+ + + + R GY+I Sbjct: 192 IDVHIGRLRKKIDSPGQSPLIRTVRGSGYAI 222 >gi|325168770|ref|YP_004280560.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325064493|gb|ADY68182.1| two component transcriptional regulator [Agrobacterium sp. H13-3] Length = 229 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 18/166 (10%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124 IR S P+I ++ L G DD V KP + E++AR A+ RR+ + ++ Sbjct: 69 IRRVSDTPVIMVTALADDLDKLQALRIGADDYVVKPFNPLEVVARAKAVLRRVAGRSPDH 128 Query: 125 RAETGPIRVFSDGRDPEVQGEV---------FPLPRRERRILEYLMANRGKRVAKTQIFS 175 GP+RV DP+ V L R E RIL ++ A+ + ++++ Sbjct: 129 VMRVGPLRV-----DPQAHRAVVETGSDHVTLDLTRTEFRILAHMAASPNRVFERSELVD 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A L + + V+SH+S LR+KL + R +GY ID Sbjct: 184 AC--LPEGEALDRTVDSHVSNLRRKLTAAGAGGVLTGVRGVGYRID 227 >gi|311696245|gb|ADP99118.1| two component transcriptional regulator, winged helix family [marine bacterium HP15] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 12/156 (7%) Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ + + +P+I ++ + + G DD + KP RE++AR+ Sbjct: 59 GTSGVELARRLKKEESTADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR + PI V DP Q + E R+L++ M ++ + Sbjct: 119 AVLRR---ATPPGVDSPIEVEGLTLDPVGHRVTTQDGALTMGPTEYRLLQFFMTHQERVY 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 ++Q+ ++G + VEE V+ HI +LRK L ++ Sbjct: 176 TRSQLLDQVWG-GNVYVEERTVDVHIRRLRKALGDQ 210 >gi|312140719|ref|YP_004008055.1| two component system response regulator [Rhodococcus equi 103S] gi|325675642|ref|ZP_08155326.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|311890058|emb|CBH49376.1| putative two component system response regulator [Rhodococcus equi 103S] gi|325553613|gb|EGD23291.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 226 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/172 (29%), Positives = 81/172 (47%), Gaps = 19/172 (11%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTT-----LDF---FDSGVDDVVNKPIHHREILARV 112 LE+ R +RAHS D L T +DF D+G DD V KP E++ARV Sbjct: 61 LEVCRQLRAHSL-------DLAVLMLTARTDEVDFVVGLDAGADDYVGKPFRLAELMARV 113 Query: 113 AAIYRRLKVSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A+ RR + E IR+ R V G L +E +L L+ + G+ V++ Sbjct: 114 RALLRRSGGGEDVVVEVAGIRLEPAARRVLVNGSEIALANKEYELLRVLLEHAGQVVSRD 173 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFD-PVDSKRFLGYSID 221 I ++G E ++ H+S LR+K+ ++ G D + + R +G+ I+ Sbjct: 174 TILREVWGDV-ELRGSKTLDMHMSWLRRKIGDEGAGADRKIATVRGVGFRIN 224 >gi|293371962|ref|ZP_06618363.1| putative transcriptional activator protein Irlr [Bacteroides ovatus SD CMC 3f] gi|292633080|gb|EFF51660.1| putative transcriptional activator protein Irlr [Bacteroides ovatus SD CMC 3f] Length = 248 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 80/166 (48%), Gaps = 12/166 (7%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 EL + IR + +P++ ++ S LD FD+G DD + KP RE+ AR+ + +R Sbjct: 81 FELAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR- 139 Query: 120 KVSNNRAETGPIRVFSDGR------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 V+ N E V++D R D E L +E +L Y++ N + +++ +I Sbjct: 140 -VAGNAQELPQELVYADLRIDLQRKDVERNSISIKLSPKEYNLLLYMVENAERVLSRVEI 198 Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ FD N ++ +I+ LRKK+ + +K +G+ Sbjct: 199 AEKVWNTHFDTGT--NFIDVYINYLRKKIDRDFEPKLIHTKAGMGF 242 >gi|302549204|ref|ZP_07301546.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302466822|gb|EFL29915.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 247 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 9/136 (6%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 QV ++ ++ +++ + +G DD V KP E+LAR+ + RR +S R P Sbjct: 92 QVCVLFLTARDAVEDRIAGITAGGDDYVTKPFALEEVLARLRGLVRRAGMS--READAPR 149 Query: 132 RVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 V +D R+ G + L R E +L +LM N + ++K QI ++ +D Sbjct: 150 LVVADLVMDEEAREVTRSGRIVELSRTEFELLRFLMRNPRRVLSKEQILDRVWS-YDFGG 208 Query: 186 EENVVESHISKLRKKL 201 +VVE +IS LRKK+ Sbjct: 209 RAHVVELYISYLRKKI 224 >gi|255024215|ref|ZP_05296201.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL J1-208] Length = 228 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 73/148 (49%), Gaps = 8/148 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + R IR S VP+I ++ S + + G DD V KP ++AR+ A+ RR Sbjct: 60 MTICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKN 119 Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQI 173 ++N ET ++ R+ QGE+ L +E +L +LM + + ++ Q+ Sbjct: 120 STSNAENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 ++G + +E V+ HI +LR+K+ Sbjct: 180 LEQVWG-YQFYGDERTVDVHIKRLRQKI 206 >gi|237803521|ref|ZP_04591106.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025503|gb|EGI05559.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 282 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 19/195 (9%) Query: 39 QSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98 Q+ + E + L+ GE L L R +R+ S +P++ ++ + + G DD Sbjct: 90 QALSNETFDVVVLDLMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDY 149 Query: 99 VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPR 151 + KP RE++AR+ I RR V + R++ F R V G V PL Sbjct: 150 MAKPFEPRELVARIQTILRR--VRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSN 207 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-- 209 E R+L + + +++ Q+ A G EA + + I L +LR KLG DP Sbjct: 208 AEFRLLRVFLERPHRVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDPKN 262 Query: 210 ---VDSKRFLGYSID 221 + + R GY D Sbjct: 263 PQLIKTVRGEGYLFD 277 >gi|229823027|ref|ZP_04449096.1| hypothetical protein GCWU000282_00322 [Catonella morbi ATCC 51271] gi|229787466|gb|EEP23580.1| hypothetical protein GCWU000282_00322 [Catonella morbi ATCC 51271] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 84/160 (52%), Gaps = 3/160 (1%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--K 120 L RI + VP++ ++ ++ + D G DD + KP E+LAR+ + RR Sbjct: 69 LERIRLQENPVPVLLLTARDAVTDKIRGLDLGADDYMVKPFEFEELLARLRVLLRRPLRH 128 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ E GPIR+ + G+ L +E +LEYL+ N+ + +++ QI ++ Sbjct: 129 ILSDQVEIGPIRLILSQKRVLKDGQAVNLTAKEYEVLEYLVRNQNQVLSREQIRHHVWD- 187 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ E N ++ I +R+KL ++ + +KR LGY + Sbjct: 188 YEQEAESNTIDVLIKNIRRKLDSEGQPSLIQTKRGLGYVV 227 >gi|229032091|ref|ZP_04188072.1| Two-component response regulator [Bacillus cereus AH1271] gi|228729231|gb|EEL80227.1| Two-component response regulator [Bacillus cereus AH1271] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 125 SVAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIQNAIVTKRGYGYAL 225 >gi|229184192|ref|ZP_04311401.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228599307|gb|EEK56918.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] Length = 228 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ ++ + F G DD + KP E++ RV A+ +R +++ +++ Sbjct: 71 LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 130 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + + + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 131 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 189 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + + + + R LGY ++ Sbjct: 190 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 225 >gi|225018521|ref|ZP_03707713.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum DSM 5476] gi|224948722|gb|EEG29931.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum DSM 5476] Length = 244 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 4/162 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ IR S VP+I ++ + L+ F G D+ ++KP + ++ RV +I +R Sbjct: 83 LEVCAEIRKLSDVPIIMLTARNTEFDELNGFQHGADEYISKPFSPKILVTRVKSILKRAG 142 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ G +++ V + L RE +L YL+AN+ + + QI A++G Sbjct: 143 LLQDSEFNMGNLKISYREHSVYVDDQRISLTPREYDLLCYLVANKNIVLNREQILQAVWG 202 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D + V++HI LR K+ + + + R +GY + Sbjct: 203 M-DYEGDIRTVDTHIKCLRIKIPGAQEY--IKTIRKIGYKFE 241 >gi|158338366|ref|YP_001519543.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308607|gb|ABW30224.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 10/199 (5%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 AL +GY + DG + L F+ Q ++ D+ ++ L G ++L R IR Sbjct: 20 ALQSEGYRVITAADGQTALDVIQL-FKSRSQQASTLDLIILDIML--PGINGIDLCRFIR 76 Query: 69 AH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 S VP++ +S + + + G DD + KP RE++AR A+ RR +++N + Sbjct: 77 REGSTVPVLMLSAKDTEADRVVGLEVGADDYLTKPFGMRELIARCRALLRRQRLNNTDPQ 136 Query: 128 TGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + P+ V+ E L +E RILE M+ + + QI I+G D Sbjct: 137 GTLLTCREISLHPDECRVMVRDEEVNLSPKEFRILELFMSYPRRVWPREQILEKIWGP-D 195 Query: 183 EAVEENVVESHISKLRKKL 201 + V+ HI LR+K+ Sbjct: 196 YIGDSKTVDVHIRWLREKI 214 >gi|318042861|ref|ZP_07974817.1| two-component system response regulator [Synechococcus sp. CB0101] Length = 269 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 13/150 (8%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +RA S VP+I +S ++ + D G DD + KP +E+ AR+A I RR+ + Sbjct: 87 RRLRAESCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRGSA 146 Query: 125 RAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 AE G + V ++ R GE L E +LE L G+ V + + Sbjct: 147 AAEPREATPGQGVLRVGDLVVDTNRRQVTRDGERIGLTYTEFSLLELLFREPGRVVPRAE 206 Query: 173 IFSAIYGLFD-EAVEENVVESHISKLRKKL 201 I ++G A + VV+ ++++LR KL Sbjct: 207 ILEQLWGYPPRRAADLRVVDVYVARLRGKL 236 >gi|295091969|emb|CBK78076.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 228 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 6/152 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNRAET 128 ++P++ ++ S + D G DD + KP E AR+ + +R K Sbjct: 79 KIPVMMLTAKDSELDVVAGLDGGADDYMTKPFGILEFSARIRNLLKRFSDDKQEGKNLSV 138 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G I + + R+ ++G+ L +E +L YLM N + V + ++ I+G +D E Sbjct: 139 GDISIDLEKREVRMRGQEVELTLKEYELLCYLMENTSRVVTREELLDRIWG-YDYDGETR 197 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ HI LR+KL + + R +GY I Sbjct: 198 TLDMHIKTLRQKLGE--AGHSIKTVRGVGYRI 227 >gi|241764238|ref|ZP_04762270.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241366407|gb|EER60924.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 233 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 4/134 (2%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-- 128 +Q+P++ ++ + ++ SG DD + KP+ E+ ARVAA+ RR ++ E Sbjct: 72 AQLPILFVTHRQEERDIIEGLGSGADDFMVKPVRIGELSARVAALLRRAYPASAGGEIVE 131 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G R S+ R E+ G L RE + +L N G+ +++ + I G + + Sbjct: 132 FGRYRFLSETRSIEIDGVPVELKNREYDLALFLFQNMGRLLSRDHLKEIILGQVADVMSR 191 Query: 188 NVVESHISKLRKKL 201 + +++HIS+LR L Sbjct: 192 S-LDTHISRLRTLL 204 >gi|228941607|ref|ZP_04104154.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974536|ref|ZP_04135102.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981131|ref|ZP_04141431.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228778331|gb|EEM26598.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228784939|gb|EEM32952.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817819|gb|EEM63897.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942219|gb|AEA18115.1| two-component response regulator yvcP [Bacillus thuringiensis serovar chinensis CT-43] Length = 252 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 82 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 141 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 142 SAAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQVNQYVTREELLEA-- 199 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 200 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 242 >gi|229048244|ref|ZP_04193812.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH676] gi|228722969|gb|EEL74346.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH676] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 LE+ RIIR S VP++ +S + G DD + KP E+ ARV A I R Sbjct: 62 LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K S I++ DP E G+ L +E IL+ + N+ + K QI+ Sbjct: 122 KYSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++ + ++NV+ H+ +LR+K+ + Sbjct: 182 TLVWN-EEYYGDDNVINVHMRRLREKIES 209 >gi|229175113|ref|ZP_04302629.1| Two-component response regulator [Bacillus cereus MM3] gi|228608249|gb|EEK65555.1| Two-component response regulator [Bacillus cereus MM3] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 125 SVAESDCLGVNGLLLFPSQHIVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIQNAIVTKRGYGYAL 225 >gi|222875029|gb|EEF12160.1| predicted protein [Populus trichocarpa] Length = 175 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/171 (25%), Positives = 83/171 (48%), Gaps = 12/171 (7%) Query: 57 GEKVLELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G L L R RA S+ VP++ ++ + D+G DD + KP +E+LAR+ Sbjct: 4 GASGLSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIR 63 Query: 114 AIYRRLKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A+ RR ++ G + + + QG++ + E ++L YLM + + ++ Sbjct: 64 AVLRRRAPEQIQDKVNIGELVLDAAAHRVSWQGDMIKVGPTEFKLLHYLMKHPERVHSRA 123 Query: 172 QIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Q+ ++G +F +EE V+ H+ +LR+ L + +++ R GY + Sbjct: 124 QLLDKVWGDHVF---IEERTVDVHVKRLREAL--GMAGALIETVRGAGYRL 169 >gi|124009093|ref|ZP_01693776.1| response regulator DrrA [Microscilla marina ATCC 23134] gi|123985307|gb|EAY25227.1| response regulator DrrA [Microscilla marina ATCC 23134] Length = 232 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 11/139 (7%) Query: 88 LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG-PIRVFSDGRDPE---VQ 143 L FD G DD + KPI R +L+R+AA++RR + + + E I+V + D E V Sbjct: 96 LAAFDVGADDYITKPIRPRALLSRIAALFRREQKKHQKNEKKDKIQVGNLTIDRESYIVY 155 Query: 144 GEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + P LP++E +L +L N K ++ ++ I+G D V V+ HI +K+ Sbjct: 156 NDKTPITLPKKEFEMLFFLAQNPNKVFSRDELLQNIWGT-DVYVLARTVDVHI----RKV 210 Query: 202 RNKLGFDPVDSKRFLGYSI 220 R K+G + + + +GY + Sbjct: 211 REKIGGGYIKTVKGVGYKL 229 >gi|331092296|ref|ZP_08341124.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401728|gb|EGG81307.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium 2_1_46FAA] Length = 233 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 75/151 (49%), Gaps = 10/151 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IRA S P+I +S + + + G DD + KP +E++ARV A+ RR + Sbjct: 65 QVCREIRAKSNTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDAKELVARVKAVLRRYQP 124 Query: 122 SNNR---AETGPIRVFS----DGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQ 172 + A+ G V+ + + V + P +P +E +L +L A+ + + Q Sbjct: 125 AKQEIPVADKGKCVVYPGIEINLTNYSVTVDDLPVEMPPKELELLYFLAASPNQVFTREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + I+G +D + V+ HI +LR K+++ Sbjct: 185 LLDQIWG-YDYMGDTRTVDVHIKRLRAKIKD 214 >gi|323690863|ref|ZP_08105157.1| hypothetical protein HMPREF9475_00018 [Clostridium symbiosum WAL-14673] gi|323505082|gb|EGB20850.1| hypothetical protein HMPREF9475_00018 [Clostridium symbiosum WAL-14673] Length = 214 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 8/142 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR- 125 IR + VP++ ++ F +G DD ++KP + E L RV A+ RR +R Sbjct: 72 IRKKTMVPILFLTARTQESDKAMGFSAGGDDYLSKPFSNAEFLMRVKALIRRYSQYGSRL 131 Query: 126 -AETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++GPI S D + V G L E ILE L NR K + I+++I+ Sbjct: 132 SQKSGPILYVSNMVINTDEKSVSVDGVHIYLTSTEYDILELLARNRKKVFSMENIYNSIW 191 Query: 179 GLFDEAVEENVVESHISKLRKK 200 +N + HI K KK Sbjct: 192 KDSYLGTSDNAIMVHIKKFEKK 213 >gi|325962147|ref|YP_004240053.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] gi|323468234|gb|ADX71919.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] Length = 246 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 7/163 (4%) Query: 43 REDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101 R DV ++ + G G +VL RI + P + ++ ++Q + +G DD V K Sbjct: 65 RPDVLVLDVMIPGFDGVEVLG--RIRAFAPEFPALFLTAKDAVQDRIVGLAAGGDDYVTK 122 Query: 102 PIHHREILARVAAIYRRLKVSN-NRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 P E+L R+ + +R V+ + AE G + + D R+ GE L + +L Sbjct: 123 PFSMEEVLLRLHRLVQRSGVAAMDTAELVVGDLVLNLDTREVARAGEALQLTATQFELLR 182 Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 YLM N + ++K QI ++ +D + N+VE +IS LRKK+ Sbjct: 183 YLMENPKRVISKAQILDRVWN-YDFGGQANIVELYISYLRKKV 224 >gi|294508521|ref|YP_003572580.1| response regulator DrrA [Salinibacter ruber M8] gi|294344850|emb|CBH25628.1| response regulator DrrA [Salinibacter ruber M8] Length = 236 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 14/157 (8%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAETG 129 P++ I+ ++ L F G DD + KP + E+ ARV AI +R + + E G Sbjct: 83 PVLMITARGEQESKLKGFGLGADDYITKPFNVEELAARVKAILQRTMPPAEAPMDVYEIG 142 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + V + G+ E IL YL+ ++G+ V + Q+ ++G+ DE + Sbjct: 143 DVEVNFSTHEAYRNGDELNFTALEFDILRYLIQHKGRTVTRKQLLRDVWGI-DENIITRT 201 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221 ++ H++ +RKK+ DP D +GY D Sbjct: 202 IDRHMASVRKKIEP----DPSDPTYIETVYGIGYRFD 234 >gi|260550399|ref|ZP_05824610.1| two-component system response regulator [Acinetobacter sp. RUH2624] gi|260406505|gb|EEW99986.1| two-component system response regulator [Acinetobacter sp. RUH2624] Length = 247 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +Q P+I ++ + G DD V KP + E++ARV A+ RR + +N + Sbjct: 78 IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAS 137 Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 I + +D + E + L E +I+ +++ K + ++ + + Sbjct: 138 NKNKIYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D E V+SH+SKLRKKL + + R +GY +D Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGILQMFINVRGVGYRLD 238 >gi|284037825|ref|YP_003387755.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283817118|gb|ADB38956.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 223 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 82/152 (53%), Gaps = 7/152 (4%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L R IR+ ++ VP++ ++ S+ D F++G DD + KP +E+L R+ A+ RR+ Sbjct: 60 FDLCRHIRSENEAVPVLMLTALDSMADKSDGFNAGADDYLAKPFEFQELLLRLRALTRRI 119 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + D + G+ L RE ++EY+M N+GK +++ I ++ Sbjct: 120 GSRPKQVLQLADLELNLDSKTVTRAGKRIDLTTREYALVEYMMLNKGKVISRVDISERVW 179 Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDP 209 L FD NV++ ++S LRKK+ GF P Sbjct: 180 SLNFDN--NSNVIDVYVSYLRKKIDK--GFSP 207 >gi|194364697|ref|YP_002027307.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347501|gb|ACF50624.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 227 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 72/153 (47%), Gaps = 6/153 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---NNRAETG 129 P++ IS + + +G DD + KP E+ ARV + RR + +N G Sbjct: 74 TPVLMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLIRRQGPTGAIDNVLRAG 133 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEEN 188 + + R G+ L E ++LE+L+ N G+ V ++ +F ++G FD N Sbjct: 134 DLELDLMTRSARRGGDEIALLPTEFKLLEFLVRNAGQVVTRSMLFQEVWGYHFDPGT--N 191 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++ HI ++RK++ P+ + R GY D Sbjct: 192 LIDVHIGRVRKRIEQPGRPQPIMTVRGTGYVFD 224 >gi|126651878|ref|ZP_01724079.1| two-component response regulator [Bacillus sp. B14905] gi|126591346|gb|EAZ85454.1| two-component response regulator [Bacillus sp. B14905] Length = 256 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 32/239 (13%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLE----FEEWLQSSAREDVSAIEAFLIGKGE 58 +L+DD + + D + ++ EGF ++ +E L + ++ I ++ Sbjct: 22 LLVDDESAILDMLQMV-----LTKEGFRQIDRASTAQEALNACNKKPYDMILLDVMLPDR 76 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++ IR ++ P++ I+ S L F G DD + KP + EI+AR+ A RR Sbjct: 77 SGFDICPFIRETTEAPILFITAKNSDLEKLTGFAMGGDDYITKPFNPLEIVARMKAQLRR 136 Query: 119 LK---------VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 +K +S+N + G +V + V G+V P + ++L + + + Sbjct: 137 VKLYEEERPLHLSSNMFIYDFGRFQVNERAGELMVDGQVISCPAQVYQLLLFFCKHPNQI 196 Query: 168 VAKTQIFSAIYGLFDEAV-EENVVESHISKLRKKLRNKLGFDPVDSK-----RFLGYSI 220 K+Q++ A++G D + ++N V HI ++R+++ DP D + R LGY + Sbjct: 197 FTKSQLYEAVWG--DHSFGDDNTVTVHIGRIRERIEK----DPKDPELLLTIRGLGYKL 249 >gi|56752230|ref|YP_172931.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81300682|ref|YP_400890.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56687189|dbj|BAD80411.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81169563|gb|ABB57903.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 226 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 12/155 (7%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 Q P+I ++ + + +SG DD V KP E+LARV A RR+ N E + Sbjct: 74 QTPIILLTAKDEISDRVSGLNSGADDYVTKPFSIEELLARVKAQLRRV----NPEEPDRL 129 Query: 132 RVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + F+D + EV+ L +E +LE+L+ + + V + QI ++G +D Sbjct: 130 Q-FADVSLHRLTHEVYRGSQRLELTAKEFDLLEFLLRHARQVVTRDQILEQVWG-YDFMG 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E N++E +I LR KL + + R +GY I Sbjct: 188 ESNIIEVYIRALRLKLEASNPQRILQTVRGVGYVI 222 >gi|330821252|ref|YP_004350114.1| two component transcriptional regulator [Burkholderia gladioli BSR3] gi|327373247|gb|AEA64602.1| two component transcriptional regulator [Burkholderia gladioli BSR3] Length = 266 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 16/167 (9%) Query: 49 IEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI 108 ++ L G+G L++ R +R S +P+I ++ L + G DD V KP RE+ Sbjct: 57 LDLMLPGRGG--LDICRELRGFSTIPVIILTARVDEIDRLLGLELGADDYVCKPFSPREV 114 Query: 109 LARVAAIYRRLKVS--NNRAETGPIRVFSDGR------DPE-----VQGEVFPLPRRERR 155 +ARV AI RR++ + + E G +DG DPE + G L E R Sbjct: 115 VARVKAILRRIEQAERKGKGEAGHEANAADGGAAPFEIDPEHHVARLDGRNLHLTPVELR 174 Query: 156 ILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 +L L+AN G+ ++ + +Y V + V+SH+ LR+KL+ Sbjct: 175 LLALLVANPGRIYSRDFLLRRLYDDH-RVVTDRTVDSHVKNLRRKLQ 220 >gi|303240383|ref|ZP_07326901.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302592110|gb|EFL61840.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 239 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/145 (24%), Positives = 72/145 (49%), Gaps = 5/145 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR S VP+I ++ + D G DD + KP E++AR+ A+ RR+ Sbjct: 57 FEVCQEIRKTSNVPIIMVTAKGEDADRIMGLDIGADDYIVKPFSPGEVMARIRAVLRRID 116 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +S + + + + ++ G+ L ++E I L +N GK ++ + ++ Sbjct: 117 ISEEDKKDIIRFPGLEINISDYEVKINGQEVNLTKKEIEIFWLLASNPGKVFSRDNLLNS 176 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++G ++ + V++HI +LR K+ Sbjct: 177 VWG-YEYFGDARTVDTHIKRLRAKV 200 >gi|302390009|ref|YP_003825830.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302200637|gb|ADL08207.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 227 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 3/137 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124 +R S +P+I ++ + F+ G DD V KP RE++ARV A+ RRL K Sbjct: 69 VRKKSDIPIIMLTARGEEFDKVLGFELGADDYVVKPFSPRELVARVKALLRRLGPKGPEQ 128 Query: 125 RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 E + + + R G+ L +E +L +L N+ K + ++ ++G +D Sbjct: 129 TLEFPGLVIEPESRTVRADGKEVALTPKEFDLLYFLAKNKEKVFTREKLLEEVWG-YDFF 187 Query: 185 VEENVVESHISKLRKKL 201 V++HI +LR+KL Sbjct: 188 GSLRTVDTHIKQLREKL 204 >gi|295425531|ref|ZP_06818222.1| response regulator [Lactobacillus amylolyticus DSM 11664] gi|295064784|gb|EFG55701.1| response regulator [Lactobacillus amylolyticus DSM 11664] Length = 265 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/213 (23%), Positives = 98/213 (46%), Gaps = 16/213 (7%) Query: 23 GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGIS 79 ++ EGF+ + + EE +Q D + L+ + LE+ R +R +P+I ++ Sbjct: 48 NLTKEGFDVDTAYDGEEAVQKVEEYDPDLMILDLMLPKKDGLEVAREVRQTHDMPIIMVT 107 Query: 80 DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-----------SNNRAET 128 + + + G DD V KP +RE++ARV A RR + ++ + Sbjct: 108 AKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDIVKKAEAATQEEADKNIKI 167 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G + + D E G+ L RE +L YL + G+ + + + ++G +D + Sbjct: 168 GNLVIMPDAYIVENNGKKIELTHREFELLYYLAQHMGQVMTREHLLQTVWG-YDYFGDVR 226 Query: 189 VVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 V+ + +LR+K+ N + + ++R +GY + Sbjct: 227 TVDVTVHRLREKIEDNPIQPQILITRRGVGYYV 259 >gi|289549074|ref|YP_003474062.1| transcriptional regulator [Thermocrinis albus DSM 14484] gi|289182691|gb|ADC89935.1| two component transcriptional regulator, winged helix family [Thermocrinis albus DSM 14484] Length = 223 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 9/157 (5%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNR 125 A VP++ I+ L F+ G DD + KP RE+LAR+ A+ RR LK S Sbjct: 73 ATKSVPIVFITVKGMEDDRLKGFELGADDYITKPFSLRELLARIRAVLRRSGHLK-SEGI 131 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G +++ + + E L E +ILE L+ N G+ V++ + A+ + V Sbjct: 132 YQLGELQIDTQKMEVRRGKEKIYLTPTEFKILECLLENYGRPVSREYLIEAV---LKKDV 188 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + ++ H+ LR+KL K G + + R +GY I+ Sbjct: 189 YDRTIDVHVKNLREKL-GKEG-QAIRTVRGIGYKIEL 223 >gi|238895651|ref|YP_002920386.1| DNA-binding transcriptional regulator BaeR [Klebsiella pneumoniae NTUH-K2044] gi|330010883|ref|ZP_08306922.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3] gi|238547968|dbj|BAH64319.1| two-compoent regulatory system response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328534358|gb|EGF60966.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3] Length = 240 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 6/153 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S VP++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLKVSNNRA---ETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K + P+ + +GR + ++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRDLQALDAQSPL-IVDEGRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ Q+ + +Y + V + ++SHI LR+KL Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212 >gi|229829750|ref|ZP_04455819.1| hypothetical protein GCWU000342_01847 [Shuttleworthia satelles DSM 14600] gi|229791739|gb|EEP27853.1| hypothetical protein GCWU000342_01847 [Shuttleworthia satelles DSM 14600] Length = 218 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 82/162 (50%), Gaps = 6/162 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 L++ + IR S++P++ ++ + + ++ F S D + KP + AR+ + I R Sbjct: 60 LDVLKEIRRKSRLPVLILTAFSDEEYKIEAFTSLADGYIEKPFSLPVLKARIDSLIERHF 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ A G FS V GE + +E IL++L+ + G + + QI ++ Sbjct: 120 GLTDRFAYKGTEVNFS-SYSARVDGEKVDVNAKEVEILKFLLEHEGCALTRAQILDGVWK 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I K+LR KLG D + + R +GY ++ Sbjct: 179 ETEEIPFDRVIDVYI----KELRKKLGLDCIITVRNVGYKLE 216 >gi|222097886|ref|YP_002531943.1| response regulator [Bacillus cereus Q1] gi|228987692|ref|ZP_04147803.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229158056|ref|ZP_04286126.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|221241944|gb|ACM14654.1| response regulator [Bacillus cereus Q1] gi|228625375|gb|EEK82132.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228771966|gb|EEM20421.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 65 RQIRNVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 124 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 125 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQANQYVTREELLEA-- 182 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 183 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 225 >gi|254468051|ref|ZP_05081457.1| two component transcriptional regulator, winged helix family [beta proteobacterium KB13] gi|207086861|gb|EDZ64144.1| two component transcriptional regulator, winged helix family [beta proteobacterium KB13] Length = 233 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/152 (23%), Positives = 76/152 (50%), Gaps = 3/152 (1%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAET 128 +++P++ ++ ++ FD G DD + KP +E++AR+ AI RR K + + Sbjct: 76 NEIPVMMLTAKNEESNKIEGFDVGADDYLAKPFSQKELIARIKAILRRKKPDFFPKQIKH 135 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G ++V D + Q + L E ++L L N+ + +++ I I+ E ++ Sbjct: 136 GNLQVHPDSHEVFHQSKFIKLGPTEFKLLYLLCMNKNRVLSREIIVDKIWNNESE-IDAR 194 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ H+ +LR L++ + +++ R GY + Sbjct: 195 TIDVHVKRLRSTLKSHGIENSIETIRGAGYKL 226 >gi|206578805|ref|YP_002237485.1| transcriptional regulatory protein BaeR [Klebsiella pneumoniae 342] gi|288934410|ref|YP_003438469.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|290508614|ref|ZP_06547985.1| two-component system, OmpR family, response regulator BaeR [Klebsiella sp. 1_1_55] gi|206567863|gb|ACI09639.1| transcriptional regulatory protein BaeR [Klebsiella pneumoniae 342] gi|288889139|gb|ADC57457.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289778008|gb|EFD86005.1| two-component system, OmpR family, response regulator BaeR [Klebsiella sp. 1_1_55] Length = 240 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 6/153 (3%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S VP++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLKVSNNRA---ETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRV 168 I RR K + P+ + +GR + ++ L E R+L+ L GK Sbjct: 122 KTILRRCKPQRDLQALDAQSPL-IVDEGRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ Q+ + +Y + V + ++SHI LR+KL Sbjct: 181 SREQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212 >gi|170768541|ref|ZP_02902994.1| transcriptional regulatory protein CreB [Escherichia albertii TW07627] gi|170122645|gb|EDS91576.1| transcriptional regulatory protein CreB [Escherichia albertii TW07627] Length = 229 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE-KVLE 62 L++D + D + + +G S++ F E + AR+ + +G + E Sbjct: 8 LVEDEQGIADTLVYMLQQEGFSVDVF---ERGLPVLDKARQQAPDVIILDVGLPDISGFE 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A H +P++ ++ L + G DD V KP RE+ ARV + RR+K Sbjct: 65 LCRQLLAIHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP----RRERRILEYLMANRGKRVAKTQIFSAI 177 + I F + +P Q F P R E +L+ L+ + G+ ++ Q+ + Sbjct: 125 FSTPPPVLRIGHF-ELNEPAAQISWFDTPLTLTRYEFLLLKTLLKSPGRVWSRQQLMDCV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WEDAQDTYDRT-VDTHIKTLRAKLRAINPELSPINTHRGMGYSL 226 >gi|148380258|ref|YP_001254799.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932647|ref|YP_001384564.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936330|ref|YP_001388080.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289742|emb|CAL83848.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928691|gb|ABS34191.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932244|gb|ABS37743.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 226 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 5/164 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R S +P+I ++ ++ + D+G DD + KP E+LAR+ ++ Sbjct: 61 LEVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRI 120 Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V+ + E G + + L RE +L+ LM N+ + ++ + Sbjct: 121 VTVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G +D E NV++ +I LR K+ + + + R +GY I Sbjct: 181 VCG-YDYLGETNVIDVYIRFLRTKIDDAFKAKIITTVRGVGYVI 223 >gi|83816384|ref|YP_446589.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|83757778|gb|ABC45891.1| response regulator DrrA [Salinibacter ruber DSM 13855] Length = 226 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 14/157 (8%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVSNNRAETG 129 P++ I+ ++ L F G DD + KP + E+ ARV AI +R + + E G Sbjct: 73 PVLMITARGEQESKLKGFGLGADDYITKPFNVEELAARVKAILQRTMPPAEAPMDVYEIG 132 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + V + G+ E IL YL+ ++G+ V + Q+ ++G+ DE + Sbjct: 133 DVEVNFSTHEAYRNGDELNFTALEFDILRYLIQHKGRTVTRKQLLRDVWGI-DENIITRT 191 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221 ++ H++ +RKK+ DP D +GY D Sbjct: 192 IDRHMASVRKKIEP----DPSDPTYIETVYGIGYRFD 224 >gi|78065828|ref|YP_368597.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77966573|gb|ABB07953.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 252 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 12/171 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L R IRA S++PLI ++ + + + G DD + KP RE++AR+ I RR++ Sbjct: 80 LNLCREIRATSEIPLIILTARGEMTDRIVGLELGADDYIVKPFEPRELVARIQTILRRVR 139 Query: 121 VSN---NRAET----GPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RA+ R+ GR V PL E R+L +A G+ +++ Sbjct: 140 AQTQGRTRAQEESRFAGWRLHQIGRHLIAADNTVIPLSNAEFRLLNAFLAAPGRVLSREY 199 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSID 221 + G + + + ++ IS+LR+KLR + +P + + R GY +D Sbjct: 200 LMDTARGKSIDTFDRS-IDVQISRLRQKLREDIK-EPRLIRTIRGEGYMLD 248 >gi|27382730|ref|NP_774259.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27355902|dbj|BAC52884.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 234 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 66/148 (44%), Gaps = 8/148 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R IR S VP++ +S + + G DD V KP RE++ARV I RRL Sbjct: 62 LDVCREIRKGSDVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVILRRLS 121 Query: 121 VSNNRAETGPIRVFSDGR--DPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N A+ GP + G DPE G L E IL + + Q+ Sbjct: 122 PRNGEAKAGPSALAQGGLLIDPEQHVASFAGTPLKLTAIEFGILRAFLTRPTSVFNREQL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 A Y L + V + ++SHI +R KL Sbjct: 182 MRAAYQL-NIQVSDRTIDSHIRNIRAKL 208 >gi|317404121|gb|EFV84571.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 243 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 92/215 (42%), Gaps = 24/215 (11%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L +GY + DG EG LE W A+ L+ G LE+ + RA Sbjct: 24 LRDEGYAVEYAADGN--EGMRRLEEGGW---------DALVLDLMLPGIDGLEICKRARA 72 Query: 70 HSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRA 126 ++ P+I S S + + G DD + KP E++ARV A+ RR + N R Sbjct: 73 MTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRTEALERNARI 132 Query: 127 ETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G +R DP V L RE +L + N K ++ + + ++G Sbjct: 133 DAGSLRQHGVAIDPIARTASVDERRLELTPREFDLLHFFARNPDKVFSRLDLLNQVWGYQ 192 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 E E+ V +HI++LR K+ DP + +R L Sbjct: 193 HEGY-EHTVNTHINRLRTKIEA----DPSNPQRIL 222 >gi|315641357|ref|ZP_07896433.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] gi|315482930|gb|EFU73450.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] Length = 234 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D I F E F + + EE L+ + I L+ L Sbjct: 4 ILVVDDEKPISD--IVKFNLSKEGYEVFTAYDGEEALEKVREVEPDLILLDLMLPKMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 62 EVAREVRKTFDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSS 121 Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + AE G + + D E L RE +L YL + G+ + + + Sbjct: 122 AAKEAEEQTNSELSIGDLTIHPDAYMVTKHNEAIELTHREFELLHYLAKHIGQVMTREHL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ N + + ++R +GY + Sbjct: 182 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNYLATRRGVGYYL 228 >gi|310640765|ref|YP_003945523.1| response regulators consisting of a chey-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] gi|309245715|gb|ADO55282.1| Response regulators consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 90/233 (38%), Gaps = 38/233 (16%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 +AL K+GY DG EG N+ E R + L+ +E+ R I Sbjct: 20 KALTKEGYNLTTASDGE--EGLNAFE---------RHTYDLVLVDLMMPKVDGMEVIRQI 68 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--------- 118 R S VP++ +S S G DD V KP E+ AR+ + RR Sbjct: 69 RTRSAVPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAIRRSTTYARLQQ 128 Query: 119 ---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 L N R + V DG E+Q L +E IL+ +N + Sbjct: 129 QEEQPQAQVLTYGNLRIDFDHFTVIRDGN--EIQ-----LTAKESDILKLFASNPNRVFT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 K Q++ I+ D +ENV+ HI +LR+K+ PV K G W Sbjct: 182 KAQLYGFIWK-DDYMGDENVINVHIRRLREKIEEDPSH-PVHIKTLWGIGYKW 232 >gi|149927072|ref|ZP_01915330.1| phosphate regulon transcriptional regulatory protein [Limnobacter sp. MED105] gi|149824293|gb|EDM83513.1| phosphate regulon transcriptional regulatory protein [Limnobacter sp. MED105] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 79/153 (51%), Gaps = 12/153 (7%) Query: 57 GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G+ ++ +R H VP+I ++ Q +D ++G DD + KP +E+LAR+ Sbjct: 58 GKTGIQFAHELRGHERTRHVPVIMLTARTEEQDKVDGLEAGADDYITKPFSPKELLARIK 117 Query: 114 AIYRRL--KVSNNRAETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVA 169 A+ RR +++++ E +++ D + G ++ + E R+L + M + + + Sbjct: 118 AVLRRRAPQLTDDIVEVHGLKL--DPVTHRIMGHDKIIDMGPTEFRLLHFFMTHPERVHS 175 Query: 170 KTQIFSAIYGLFDEA-VEENVVESHISKLRKKL 201 +TQ+ ++G D VEE V+ HI +LR+ L Sbjct: 176 RTQLLDQVWG--DHVFVEERTVDVHIRRLRQAL 206 >gi|58583465|ref|YP_202481.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428059|gb|AAW77096.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 260 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 31/195 (15%) Query: 51 AFLIGKGEKVL------------ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98 A L G+G +++ E+ R IR S VP+I ++ + D+G +D Sbjct: 70 ALLAGQGAELVVLDIGLPDRDGHEMLREIRQWSNVPVIMLTVRAGETEKVAALDAGANDY 129 Query: 99 VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDG--------RDPEVQGEVFPLP 150 V KP +E++AR+ + R+ + E+ VF DG R+ + GE PL Sbjct: 130 VTKPFGVQELMARIRVLLRQAGAGSTVEES----VFDDGRLHIHLGLREVTLNGEAVPLS 185 Query: 151 RRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG---- 206 R+E +L L+ + G+ V + Q+ ++G E + + + + KLR+KL++ Sbjct: 186 RKEYALLALLLKHAGRVVTQPQLLRELWGPTHEE-DTHYLRILVGKLRQKLQDDAAAPHY 244 Query: 207 --FDPVDSKRFLGYS 219 +P RF+G + Sbjct: 245 IVTEPGVGLRFIGVT 259 >gi|84393037|ref|ZP_00991803.1| transcriptional regulator CpxR [Vibrio splendidus 12B01] gi|84376289|gb|EAP93171.1| transcriptional regulator CpxR [Vibrio splendidus 12B01] Length = 214 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 15/118 (12%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRL------KVSNNRAETGPIRVFSDGRDPEVQGEVF 147 G DD + KP RE+LAR+ AI RR K +++ + I VF ++ G++ Sbjct: 78 GADDYLPKPFSDRELLARIRAILRRTQTNTAPKSASDTIQYQDIEVFPGKQEAYCNGQII 137 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYG----LFDEAVEENVVESHISKLRKKL 201 L E +L +L+ N G+ + K + + G FD A ++ HIS LRKK+ Sbjct: 138 DLTTTEFALLSHLIQNPGQVITKEALSLDVLGKRLAAFDRA-----IDMHISNLRKKI 190 >gi|297579645|ref|ZP_06941572.1| transcriptional regulator [Vibrio cholerae RC385] gi|297535291|gb|EFH74125.1| transcriptional regulator [Vibrio cholerae RC385] Length = 224 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 12/167 (7%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L L + IRA +QV ++ +S ++ + +G DD + KP H E+LAR+ A+ RR Sbjct: 60 LTLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRR- 118 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQI 173 N + T F+D V+ L +E ILE + G ++ +I Sbjct: 119 ---NIQTHTSNKLRFADLELCLSTMRVYRAEQPIGLTAKEISILELFLRKPGHIFSRERI 175 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G+ + + NVV+ ++ +LRKK+ + +KR +GY + Sbjct: 176 LANVWGIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221 >gi|303240453|ref|ZP_07326970.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302592018|gb|EFL61749.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 231 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 20/168 (11%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +P+I +S + + G DD V KP + E++ARV + RR + A Sbjct: 69 IREELNIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELMARVKSQMRRYTLLGGAA 128 Query: 127 E------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179 E G + + ++ ++ + GE+ L E I+ +LM N G+ + QI+ ++ Sbjct: 129 EKSGVIKNGGLELDTEAKEVRLDGELVKLTATEYGIVLFLMNNIGRVFSIEQIYENVWNE 188 Query: 180 -LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221 L+ E+ V HI ++R+K+ +P D K +GY I+ Sbjct: 189 PLYS---SESTVAVHIRRIREKME----INPKDPKYLKVVWGIGYKIE 229 >gi|300704596|ref|YP_003746199.1| two-component system response, response regulator receiver, transcriptional regulatory protein [Ralstonia solanacearum CFBP2957] gi|299072260|emb|CBJ43593.1| putative two-component system response, response regulator receiver, transcriptional regulatory protein [Ralstonia solanacearum CFBP2957] Length = 237 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 54/113 (47%), Gaps = 5/113 (4%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKV----SNNRAETGPIRVFSDGRDPEVQGEVFP 148 +G DD V KP+ E++ARV A+ RR S R GP V GR + G Sbjct: 96 AGADDYVVKPVRRAELVARVGALLRRAAPRTGESLERMRVGPYGVDPLGRVLTLHGSQVE 155 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L RE + YL N GK V + I A++G + + +HISKLR KL Sbjct: 156 LSPREFDLALYLFRNVGKLVPRELIEQAVWG-RSIGPDSRTLATHISKLRLKL 207 >gi|283471843|emb|CAQ51054.1| response regulator protein [Staphylococcus aureus subsp. aureus ST398] Length = 221 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 6/158 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S VP+I IS + G DD + KP + +A++ A+ RR L V+N Sbjct: 66 IRKTSNVPIIFISSRIDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYDLSVAN 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + D Q + L E +IL+ L N K V++T + + Sbjct: 126 DSMTVKGCTLILDEAKVVYQEQNIQLSLTELQILKLLFQNEDKYVSRTASIEKCWE-SEN 184 Query: 184 AVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 +++N + ++++LRKKL N +G D + +K+ +GY + Sbjct: 185 FIDDNTLAVNMTRLRKKL-NTIGVNDFIITKKNVGYKV 221 >gi|262369887|ref|ZP_06063214.1| response regulator [Acinetobacter johnsonii SH046] gi|262374252|ref|ZP_06067528.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262310810|gb|EEY91898.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262314926|gb|EEY95966.1| response regulator [Acinetobacter johnsonii SH046] Length = 237 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 14/145 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S VP+I +S + + + D+G +D V KP +E++AR+ + R+ ++ Sbjct: 77 LRTWSHVPVIVLSVRANEEEKVKLLDAGANDYVTKPFSVQELVARIRVLLRQ-----HQH 131 Query: 127 ETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 T +F DG R + ++ L R+E ++L L N+G+ + + QI ++ Sbjct: 132 STVDTVIFDDGVLKIDFSKRQVFLNQQLLSLTRKEYQLLNLLAKNKGQLITQPQILKELW 191 Query: 179 GLFDEAVEENVVESHISKLRKKLRN 203 G + + + + ++KLR KL + Sbjct: 192 GPTHQE-DTHYLRILVAKLRVKLND 215 >gi|225375459|ref|ZP_03752680.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM 16841] gi|225212656|gb|EEG95010.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 17/146 (11%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +P++ + + + +G DD + KP E++AR+A++ RR N +A Sbjct: 67 IRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNQQA 126 Query: 127 ETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G I+ + + R F LP +E +L Y ++GK + K QI+ ++ Sbjct: 127 --GAIQKLNFYGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVW 184 Query: 179 G---LFDEAVEENVVESHISKLRKKL 201 G +D++ N++ + IS+LRKKL Sbjct: 185 GEEYFYDDS---NIM-AIISRLRKKL 206 >gi|254507033|ref|ZP_05119171.1| DNA-binding response regulator [Vibrio parahaemolyticus 16] gi|219550028|gb|EED27015.1| DNA-binding response regulator [Vibrio parahaemolyticus 16] Length = 219 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 28/220 (12%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKVLELPRII 67 AL ++G+ DG+ + L + ED AI L + K + + L I Sbjct: 19 ALEQNGWTPELSTDGI-----------DALYRATSEDWEAIVLDLGLPKLDGLTVLKSIR 67 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA- 126 + P+I +S +L ++ ++G DD KP E++AR+ A RR S N + Sbjct: 68 DENINTPIIILSARDTLTQRVEGLNAGADDYQTKPFEMVELIARIRAQLRR--ASGNASP 125 Query: 127 --ETGPIRVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181 + G + + D R +V QG+ L E +++ Y M + K +++T++ IY F Sbjct: 126 VIQNGNLSL--DTRTSKVMWQGQAISLTALEFKVVAYFMHHPEKVISRTELVEHIYKQDF 183 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + N +E I ++RKK+ K+ + + R LGY ++ Sbjct: 184 DR--DSNTIEVFIGRIRKKIAPKV----IKTVRGLGYQLN 217 >gi|219848756|ref|YP_002463189.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543015|gb|ACL24753.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 227 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 9/153 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + P++ ++ + + + D G DD + KP ++ E+LAR+ + RR+ S NR Sbjct: 70 VREFASTPILMLTAKAASRDIITGLDQGADDYLTKPFNYDELLARIRTLLRRVP-SVNRP 128 Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 T G I + R+ V+G + L E ++L L G V Q+ A++G Sbjct: 129 LTVGNGLITINPRQREVRVRGTIIDLTPTEYQLLMVLAEQAGAVVTHEQLLRAVWG---- 184 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 E N ++ LR K+ FDP + L Sbjct: 185 -NEPNRDNDYLKVYIWHLRRKIEFDPRQPQLLL 216 >gi|332652719|ref|ZP_08418464.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16] gi|332517865|gb|EGJ47468.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16] Length = 236 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 10/185 (5%) Query: 19 FGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIG 77 F DGVS G ++LE+ + + D ++ + G G +VL+ R R + P + Sbjct: 37 FSVDGVS-NGEDALEYGQ----TGEYDGLILDIMMPGLDGLQVLQTLR--RNGIKTPALF 89 Query: 78 ISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS-NNRAETGPIRVFSD 136 ++ + ++ D+G DD + KP E+LAR+ A+ RR + G + + Sbjct: 90 LTARTEISQRVEGLDAGADDYLPKPFSTAELLARIRAMLRRKDTYLPDLLAIGSVILNRS 149 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISK 196 Q ++ L +E +ILE +M G + + + ++G +D V+ +VV HIS Sbjct: 150 TYQLVFQEKIQTLSGKEFQILEMMMQAPGTIIPTDRFITHLWG-WDTNVDTSVVWVHISN 208 Query: 197 LRKKL 201 LRKK+ Sbjct: 209 LRKKI 213 >gi|330889421|gb|EGH22082.1| DNA-binding response regulator RstA [Pseudomonas syringae pv. mori str. 301020] Length = 245 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 95/196 (48%), Gaps = 15/196 (7%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 VS+EG +L + + + D+ ++ L GE + R +R P++ ++ Sbjct: 32 VSIEGNGALAAARII--AEQPDLVILDLML--PGEDGFSICRSVRDRYDGPILMLTARTD 87 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET------GPIRVFSDG 137 + D+G DD V KP+H R +LAR+ A+ RR + A GP+ + Sbjct: 88 DTDHIQGLDTGADDFVCKPVHPRVLLARIHALLRRSEAPQVPAAELRGLVFGPLVGDNAL 147 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 R+ ++ + L E +L +AN G+ +++ +IF+A+ G+ + ++ ++ IS++ Sbjct: 148 REAWLREQSIELTGAEFDLLWLRVANAGRTLSREEIFTALRGVGYDG-QDRSIDVRISRI 206 Query: 198 RKKLRNKLGFDPVDSK 213 R K+G DP+ + Sbjct: 207 RP----KIGDDPIHPR 218 >gi|319940840|ref|ZP_08015179.1| winged helix family Two component transcriptional regulator [Sutterella wadsworthensis 3_1_45B] gi|319805722|gb|EFW02503.1| winged helix family Two component transcriptional regulator [Sutterella wadsworthensis 3_1_45B] Length = 233 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 16/210 (7%) Query: 22 DGVSLEGFNSLEFE---EWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGI 78 D +LEGF+++ E L ARE + ++ G +E+ + +R S +P++ + Sbjct: 23 DYFTLEGFDTVPAHNGPEGLAHLAREPFDLVVLDVMMPGMSGVEVLKKMREKSHIPVLML 82 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE---TGPIRVFS 135 + + + G DD V KP RE++AR+ AI RR + A GP+ + Sbjct: 83 TARGDPVDRIVGLELGADDYVQKPCPPRELVARINAILRRSATAWAAAAPVIVGPVTIDP 142 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI----YGLFDEAVEENVVE 191 R L E + E L + G V K +I+ + G +D A ++ Sbjct: 143 AQRSVNSAAGPIALTGTEFSLFELLARHAGTPVPKEEIYPKVLGRPMGPYDRA-----ID 197 Query: 192 SHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 H+S +R K+ +G ++S R +GY + Sbjct: 198 VHVSAIRHKVSAVIGKKIAIESIRGVGYQL 227 >gi|291562260|emb|CBL41076.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 234 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/203 (24%), Positives = 92/203 (45%), Gaps = 20/203 (9%) Query: 10 LVKDGY-IALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 L K+GY + FGD L+ F Q A D+ ++ + G L + IR Sbjct: 22 LEKEGYEVECFGDGESLLDAF---------QKKA-PDLCILDIMMPGMDG--LTVCTQIR 69 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV------- 121 S VP+I +S S + G DD + KP E++ RV A++RR+ Sbjct: 70 KTSHVPIIIVSAKDSPLDRITGITLGSDDYMVKPFLPLELVTRVKALFRRVDTFSGQEEE 129 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + E G I+++ R +++ E F L E L +++ + ++ + +++ + Sbjct: 130 AKDSYEIGDIKLYPKRRAAKLKDEDFALTPLEFDFLCHMLERQEHAASRDDLLKSLWKVD 189 Query: 182 DEAVEENVVESHISKLRKKLRNK 204 V+ V+ + +LRKKL+++ Sbjct: 190 SREVDTRAVDDMVKRLRKKLKDQ 212 >gi|256544758|ref|ZP_05472130.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus vaginalis ATCC 51170] gi|256399647|gb|EEU13252.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus vaginalis ATCC 51170] gi|325478285|gb|EGC81401.1| response regulator receiver domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 232 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 17/155 (10%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +VLE+ IR +P++ ++ + + G DD + KP + E+ ARV A+ Sbjct: 61 GFQVLEM---IREECTIPVLMLTAKSDDDSKIYGLKQGADDYLTKPFNINELKARVEAMV 117 Query: 117 RRLKVSNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 RR N ++ +++ + R ++ L +E +L +L +N+G+ Sbjct: 118 RRYIDFNQKSTDQSDILTIDGMQIDKENRIVKISDNNIELTNKEFDLLYFLASNKGRIFT 177 Query: 170 KTQIFSAIYG---LFDEAVEENVVESHISKLRKKL 201 K QI++ ++ LFD++ N++ S ISKLRKK+ Sbjct: 178 KKQIYTNVWEEDYLFDDS---NIM-SFISKLRKKI 208 >gi|271964907|ref|YP_003339103.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508082|gb|ACZ86360.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 224 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 11/153 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 VP++ +S D D G DD + KP + ++AR+ A+ RR +N R +R Sbjct: 73 VPILMLSAKDGEYDMADGLDLGADDYLTKPFSYVVLVARLRALLRR--GANRRPSV--LR 128 Query: 133 VFSDGRDPE----VQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 DP +GE L RE +LEYLM + V+KT+I ++ FD + Sbjct: 129 AGDLSLDPARRRVSRGETPVELTPREFALLEYLMRRHDEVVSKTEILEHVWDTFD--TDP 186 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVVE ++ LR+K+ + + R GY + Sbjct: 187 NVVEVYVGYLRRKIDVPFSRTALQTVRGAGYRL 219 >gi|196047031|ref|ZP_03114250.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196022135|gb|EDX60823.1| DNA-binding response regulator [Bacillus cereus 03BB108] Length = 225 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ ++ + F G DD + KP E++ RV A+ +R +++ +++ Sbjct: 68 LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 127 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + + + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 128 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + + + + R LGY ++ Sbjct: 187 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 222 >gi|332307902|ref|YP_004435753.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175231|gb|AEE24485.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 232 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 9/167 (5%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 + DV ++ L GE L + IR H Q PL+ ++ + + + G DD + KP Sbjct: 45 KPDVLVLDVML--PGENGFTLCKKIRPHYQGPLLFMTAKDNDFDHVLGLEIGADDYIVKP 102 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRI 156 + R +LAR+ A+ RR + +++E F R + G+ PL E + Sbjct: 103 VEPRVLLARIQALLRRSALPQSQSEQAKQLCFGQLQLDYLARKVVLHGQDVPLTSHEFDM 162 Query: 157 LEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 L L +N + V + ++ + G + ++ + + IS+LRKKL++ Sbjct: 163 LWKLASNASQLVDRNTLYRELIGREYDGLDRS-ADVRISRLRKKLKD 208 >gi|325288450|ref|YP_004264631.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324963851|gb|ADY54630.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 223 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/162 (32%), Positives = 82/162 (50%), Gaps = 28/162 (17%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSNNRAETG 129 + +I ++ S+Q + DSG DD + KP E+LAR+ A+ RR + + N + G Sbjct: 73 IAIILLTAKDSVQDRVIGLDSGADDYLVKPFASEELLARIRALSRRKSNVLLPNEKLSLG 132 Query: 130 PIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 I VF DP +QGE+ L +E +L+ L+ + G+ + K QI ++GL D Sbjct: 133 DI-VF----DP-LQGEIICGEEKIKLTLKESLLLDLLLRHAGQVLTKEQILDRVWGL-DS 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSI 220 VE VE +I LR+K+ P DS R +GYS+ Sbjct: 186 EVETGTVELYIHYLRRKI-------PSDSIRIETIRGIGYSL 220 >gi|319654386|ref|ZP_08008473.1| hypothetical protein HMPREF1013_05093 [Bacillus sp. 2_A_57_CT2] gi|317393885|gb|EFV74636.1| hypothetical protein HMPREF1013_05093 [Bacillus sp. 2_A_57_CT2] Length = 228 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 6/162 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R S +P++ +S + L+ F G DD + KP + E+LARV A+ RR Sbjct: 65 RELRNTSNIPILILSSKKERKDILNGFKHGADDYITKPFNDGELLARVEALLRRTSAHKQ 124 Query: 125 RAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + ++ + G D + PL +E +L L+ N ++ + I+ + Sbjct: 125 IGLSIQGLIWDERGFDLTYNEKSIPLTPKEFALLGTLIKNPNHVFSREVLLKIIWE-NNG 183 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVD--SKRFLGYSIDWN 223 E ++SHI +R+KLR G+ PVD G WN Sbjct: 184 QTENRTIDSHIRNIREKLRQS-GY-PVDLYLNTVWGTGYQWN 223 >gi|319794193|ref|YP_004155833.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315596656|gb|ADU37722.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 234 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 14/199 (7%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVLELPRI 66 RAL + G++A D + E F + D ++ L K G VL R Sbjct: 18 RALTQSGFVADHAPDARTAEAF---------MAGTEYDAIVLDLRLPDKHGLSVLADMR- 67 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-R 125 A + P++ ++ +LQ + + G DD + KP E+ AR+AA+ RR + + R Sbjct: 68 -DADDRTPVLILTAQGALQDRVRGLNLGADDFLTKPFELVELEARLAALVRRSRGKQHPR 126 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + + S+ ++G + L RE+ L L+ G V K+Q+F+ ++ D Sbjct: 127 LQCASLSYDSESHAFTLRGTLLSLTPREQAALTALLMRSGAPVGKSQLFAKVF-TNDSTA 185 Query: 186 EENVVESHISKLRKKLRNK 204 + +E + +LR+KL + Sbjct: 186 GPDAIEVVLHRLRRKLADS 204 >gi|295090875|emb|CBK76982.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 223 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 83/164 (50%), Gaps = 7/164 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L + R +R+ + VP++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 60 LTVLRTLRSRGNTVPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRR- 118 Query: 120 KVSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S+N+ +T + + R G L RE +LE L+ ++G +++TQ+ + Sbjct: 119 -NSDNKTDTASVADLTVEFSTRKVTRGGVEISLSSREFALLESLIRHKGAILSRTQLENQ 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ E N+V+ +I LRKK+ + + + R GY++ Sbjct: 178 VWDFGFEG-GSNIVDVYIRYLRKKIDDPFEKKLIHTVRGAGYTL 220 >gi|262163484|ref|ZP_06031230.1| transcriptional regulator [Vibrio cholerae INDRE 91/1] gi|262028051|gb|EEY46710.1| transcriptional regulator [Vibrio cholerae INDRE 91/1] Length = 224 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 18/170 (10%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L L + IRA +QV ++ +S ++ + +G DD + KP H E+LAR+ A+ RR Sbjct: 60 LTLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRN 119 Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 L+ ++ +RV+ + E L +E ILE + G ++ Sbjct: 120 IQTHTSNKLRFADLELCLSTMRVYRAEQPIE-------LTAKEISILELFLRKPGHIFSR 172 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + ++G+ + + NVV+ ++ +LRKK+ + +KR +GY + Sbjct: 173 ERVLANVWGIHQDPL-TNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221 >gi|256371502|ref|YP_003109326.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] gi|256008086|gb|ACU53653.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] Length = 236 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 12/137 (8%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSD-GRDPE----VQGE 145 D+G DDV+ KP ++AR+ A+ RR N PI D DP +G Sbjct: 91 LDTGADDVLKKPFSFTVLVARIRALLRR-----NVESHPPILQAGDLTLDPASHRVTRGN 145 Query: 146 V-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 V L RE LE L+ N+G + K I + ++ +D + N+VE +I LRKK+ Sbjct: 146 VTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVWD-YDFEGDSNIVEVYIGYLRKKIDVP 204 Query: 205 LGFDPVDSKRFLGYSID 221 G + + R +GY ++ Sbjct: 205 FGTKAITTIRGVGYRLE 221 >gi|229141178|ref|ZP_04269717.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|228642219|gb|EEK98511.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 237 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 13/165 (7%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 R IR S P+I +S + ++G DD + KP H ++A+V + RR Sbjct: 67 RQIRTVSNAPIIFVSARTGEMDQVMAIENGGDDYITKPFHLDIVMAKVKSALRRGYGEYA 126 Query: 124 NRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE+ + V F E QG+ L + E +LE LM + V + ++ A Sbjct: 127 SAAESDCLGVNGLLLFPSQHVVEWQGQQTELTKNEFYLLECLMKQADQYVTREELLEA-- 184 Query: 179 GLFDEA--VEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 L+DE V++N + ++ ++RKKL +LG + + +KR GY++ Sbjct: 185 -LWDEVAFVDDNTLTVNVKRVRKKLE-ELGIKNAIVTKRGYGYAL 227 >gi|229165252|ref|ZP_04293041.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621] gi|228618223|gb|EEK75259.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621] Length = 237 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 11/150 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R + +P++ ++ + G DD + KP E++ARV A+ RR Sbjct: 63 IEVCRKLRDTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFL 122 Query: 121 V--SNNRAETGPIRVFS----DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V SN + F D + V G+ L +E +L++ +N + KTQ Sbjct: 123 VLGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL 201 IF ++ D +E +N V HI KLRKK+ Sbjct: 183 IFRNVWD--DNYIEDDNTVMVHIRKLRKKI 210 >gi|254518244|ref|ZP_05130300.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226911993|gb|EEH97194.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 96/226 (42%), Gaps = 32/226 (14%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L+ +GY + DG+ E L+ +E + I ++ + IR Sbjct: 27 LINEGYNIVLASDGI-----------EALEKLKKEKIDLIILDIMMPKLDGIRTCIKIRE 75 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG 129 ++P+I +S + + G DD + KP + E++ARV + RR+ + E Sbjct: 76 DKKMPIIMLSAKSEDSDKILGLNIGADDYIIKPFNPLELVARVKSQLRRVTSFSEAKEIN 135 Query: 130 PIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--L 180 ++ DG R+ V+ L RE ILE L NRG+ ++ QI+ ++ Sbjct: 136 DEEIYIDGLRINKANREVLVEDRNIKLTPREFDILEVLAINRGRVLSTEQIYEKVWNEPF 195 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221 ++ EN V HI + +R K+ +P D K +GY I+ Sbjct: 196 YN---SENTVAVHI----RNIREKIEINPKDPKYIKLVWGVGYKIE 234 >gi|255656273|ref|ZP_05401682.1| two-component system response regulator [Clostridium difficile QCD-23m63] gi|296450286|ref|ZP_06892046.1| response regulator [Clostridium difficile NAP08] gi|296878699|ref|ZP_06902703.1| response regulator [Clostridium difficile NAP07] gi|296260847|gb|EFH07682.1| response regulator [Clostridium difficile NAP08] gi|296430273|gb|EFH16116.1| response regulator [Clostridium difficile NAP07] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +P+I IS + + G DD + KP + E++ARV + RR N Sbjct: 67 IREERNIPIILISAKSEDTDKIMGLNIGADDYITKPFNLLELIARVKSNLRRYVTLGNYE 126 Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +T G + + + ++ ++ GE + E +I+E L+ N+G+ + +I+ ++ Sbjct: 127 DTCKEILKSGALELNTLTKEVKIDGENIKMTPIEYKIIELLLENKGRVFSIDEIYEKVWN 186 Query: 180 LFDEAVE-ENVVESHISKLRKKL 201 +E+ EN V HI ++R+K+ Sbjct: 187 --EESFNSENTVAVHIRRIREKI 207 >gi|225848484|ref|YP_002728647.1| transcriptional activator protein CopR [Sulfurihydrogenibium azorense Az-Fu1] gi|225643352|gb|ACN98402.1| transcriptional activator protein CopR [Sulfurihydrogenibium azorense Az-Fu1] Length = 224 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 3/149 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 + P++ +S ++ + G DD + KP E++AR+ A+ RR K ++ Sbjct: 72 KTPILVLSAKGEIEDKVKGLQLGADDYLTKPFSFPELIARINALIRRTKTIEEISKLKYA 131 Query: 132 RVFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + D EV G+ L +E +L+YL+ N + + + I ++ + D ++ NV Sbjct: 132 DLTIDLLKKEVYRNGKKINLTAKEFELLKYLVENSERIITRNMILENVFDI-DFDIDSNV 190 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ HI +LR+K+ + + + R GY Sbjct: 191 VDVHIHRLREKIDKRFEKKLIHTVRGFGY 219 >gi|254386477|ref|ZP_05001780.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194345325|gb|EDX26291.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 235 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/229 (23%), Positives = 99/229 (43%), Gaps = 34/229 (14%) Query: 9 ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 AL +DG++ DG+S LE F + R D++ ++ + G + L R I Sbjct: 22 ALERDGFVVTAMPDGLSGLESFRA----------DRPDIALLDVMV--PGMDGVSLCRRI 69 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 70 RDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLVARIRAVLRRFGHAGGPNG 129 Query: 128 T----------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 G + V ++G + G L E R+L + G +++ Sbjct: 130 GGGADDDADGERGVLTFGELEVDTEGMEVRKAGAPVALTPTEMRLLLEFSSAPGTVLSRD 189 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ ++ +D + VV+ H+ ++LR K+G D +++ R GY + Sbjct: 190 RLLERVWD-YDWGGDTRVVDVHV----QRLRTKIGQDRIETVRGFGYKL 233 >gi|148284743|ref|YP_001248833.1| CzcR-like response regulator [Orientia tsutsugamushi str. Boryong] gi|146740182|emb|CAM80430.1| CzcR-like response regulator [Orientia tsutsugamushi str. Boryong] Length = 245 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 24/203 (11%) Query: 9 ALVKDGYIA---LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65 +L +G IA G DG+ + ++ + D+S E L + +K+ Sbjct: 19 SLANEGIIADKAHLGKDGIEISKL--YDYSLIILDLMLPDISGYEVLLSLRSQKI----- 71 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNN 124 Q P++ +S ++ + G DD + KP E+ ARV AI RR K S Sbjct: 72 ------QTPVLILSGLSTIDNKIKGLSFGADDYITKPFDSDELSARVKAIIRRSKGHSEA 125 Query: 125 RAETGPIRVFSDGR-----DPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G + + D R + + Q + L +E +ILE L +G + K S +Y Sbjct: 126 VIRVGHLSINLDTRSVSMYNKDKQKNIPIHLTNKEYKILELLAIKKGTVLTKEMFLSHLY 185 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 DE E +++ I KLR+KL Sbjct: 186 SGIDEP-EIKIIDVFICKLRRKL 207 >gi|133757060|ref|YP_001096296.1| hypothetical protein pLEW6932_p27 [Staphylococcus sp. 693-2] gi|110084108|gb|ABG49262.1| hypothetical protein [Staphylococcus sp. 693-2] gi|281336140|gb|ADA62689.1| DNA-binding response regulator [Staphylococcus sp. 693-7] Length = 236 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 9/149 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R + +P++ ++ + G DD + KP E++ARV ++ RR Sbjct: 63 IEVCRRLRNKTNIPILMLTAKDQEVDKVLGLGIGADDYITKPFSINEVIARVKSLMRRFL 122 Query: 121 VSNNRAET---GPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + E+ I+ D + + GE PL +E +L++L A+ + KTQ Sbjct: 123 ILGSDGESLEKTSIKYKDLTIDLKKYIIVIGGEEVPLTAKEFELLKFLAAHNEQVFTKTQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 +F ++ D ++N V HI KLRKK+ Sbjct: 183 LFRNVWE-SDYIEDDNTVMVHIRKLRKKI 210 >gi|28211098|ref|NP_782042.1| transcriptional regulatory component of sensory transduction system [Clostridium tetani E88] gi|28203538|gb|AAO35979.1| transcriptional regulatory component of sensory transduction system [Clostridium tetani E88] Length = 230 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 8/162 (4%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S+VP+I ++ + D G DD + KP +E+++R+ AI RR K + Sbjct: 67 IRKASEVPVIFLTACDEEANVVIGLDIGADDYITKPFRIKELISRIRAILRRSKTFSKDL 126 Query: 127 E---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + +G I+V + E + L E R+L + + + +++ I ++ E Sbjct: 127 DLLISGDIKVQTLQGKIEKNDKEIILTALEYRLLLIFINHPKQILSRNIILEELWDAEGE 186 Query: 184 AVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223 V++N + +I +LR+K+ + G +P + + R LGY WN Sbjct: 187 FVDDNTLSVYIRRLREKIEDNAG-EPKYITTHRGLGYR--WN 225 >gi|93007040|ref|YP_581477.1| two component transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92394718|gb|ABE75993.1| two component transcriptional regulator, winged helix family [Psychrobacter cryohalolentis K5] Length = 234 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/153 (22%), Positives = 74/153 (48%), Gaps = 9/153 (5%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 +++P+I ++ + + D+G DD + KP RE+++R+ A+ RR SN + P Sbjct: 77 AEIPVIMLTAKSEEDSKVHGLDAGADDYMTKPFSTRELISRIKAVLRR---SNALSGDKP 133 Query: 131 IRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 I + D + Q ++ + E R+L + M++ + + Q+ ++G + + Sbjct: 134 INIGRLTLDAKSQRFMVGDDIIDMGPTEYRLLAFFMSHPERAYTRAQLLDQVWG-GNVYI 192 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E+ ++ H+ +LR LR + + R GY Sbjct: 193 EDRTIDVHVKRLRTLLRPHDCDTLIQTVRGTGY 225 >gi|330959033|gb|EGH59293.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 267 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 14/164 (8%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE L L R +R+ S +P++ ++ + + G DD + KP RE++AR+ Sbjct: 89 LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 148 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165 I RR V + R++ F R V G V PL E R+L + Sbjct: 149 QTILRR--VRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 206 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 + +++ Q+ +A G EA + + I L +LR KLG DP Sbjct: 207 RVLSREQLLNAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 245 >gi|322804927|emb|CBZ02486.1| DNA-binding response regulator [Clostridium botulinum H04402 065] Length = 227 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 7/167 (4%) Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E EL R I +P+I ++ + + + G DD + KP + +E+L RV R Sbjct: 59 ESGFELCRHINDKCCIPIIMLTARNDIVDKVLGLELGADDYITKPFNIKEVLTRVKVAIR 118 Query: 118 RLKVSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R+ +++ ++V +GR E L +E +LE+ + NR ++ Sbjct: 119 RVNKYKEKSDEEFIYINKFVKVNLEGRIVFKDDEEVKLKPQEYELLEFFVKNRNIVFSRE 178 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + ++G FD E V+ H+ +LR KL + +D+ +GY Sbjct: 179 ILLNKVWG-FDYEGEVRTVDVHVRRLRSKLDKENATSIIDTAFGIGY 224 >gi|296331985|ref|ZP_06874449.1| two-component response regulator controlling resistance to antibiotics affecting the envelope (YtsB) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|296150756|gb|EFG91641.1| two-component response regulator controlling resistance to antibiotics affecting the envelope (YtsB) [Bacillus subtilis subsp. spizizenii ATCC 6633] Length = 242 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 15/146 (10%) Query: 65 RIIRAHSQVPLIGIS--DYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R+IR+ S VP++ +S D+P+ + G DD + KP H ++A++ AI+RR V Sbjct: 76 RLIRSRSNVPILFLSSRDHPA--DMVMSMQLGADDFIQKPFHFDVLIAKIQAIFRR--VH 131 Query: 123 NNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E I+ + Q V L + E IL+ L+ + K V++ ++ + Sbjct: 132 HYNTEPSTIKTWCGAAIDAEQNLVSNDEGSVELTKNEMFILKQLIEQKNKIVSREELIRS 191 Query: 177 IYGLFDEA-VEENVVESHISKLRKKL 201 ++ DE V +N + ++++LRKKL Sbjct: 192 LWN--DERFVSDNTLTVNVNRLRKKL 215 >gi|295106285|emb|CBL03828.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 236 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 99/227 (43%), Gaps = 33/227 (14%) Query: 2 FVLIDDRALVKDG----------YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEA 51 +L++D ++D ++ GD +LE F+ F D+ ++ Sbjct: 8 ILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHF----------DLVILDL 57 Query: 52 FLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA 110 L GE+V R IR +S VP+I ++ ++ + + G DD + KP RE++A Sbjct: 58 MLPRVPGERVC---RAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVA 114 Query: 111 RVAAIYRRLKVSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 R A+ RR+ + E G + + G V GE L E ++L L G+ Sbjct: 115 RARALLRRVHADSEPQREVLEFGELTIDVSGHKVLVNGEEIDLTASEFKLLTTLSRYPGR 174 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 ++ ++ + G +D E ++SH+ K LR K+G +P K Sbjct: 175 VYSRMELVEKVLG-YDFEGYERTIDSHV----KNLRAKIGDNPRSPK 216 >gi|229550855|ref|ZP_04439580.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229315805|gb|EEN81778.1| response regulator [Lactobacillus rhamnosus LMS2-1] Length = 269 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 85/169 (50%), Gaps = 10/169 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + +R SQ+P+I +S + + +G DD V KP + E++ARV ++ RR + Sbjct: 102 MDVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQ 161 Query: 121 --VSNNRA---ETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173 V+N+ E GP+ + D + + G+ L E IL YL+A+ RV + +I Sbjct: 162 NEVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGIL-YLLASHPNRVFSADEI 220 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 F ++ + V V H+S LR K+ G +++ +GY ++ Sbjct: 221 FERVWQQ-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 268 >gi|238855538|ref|ZP_04645841.1| transcriptional activator protein CopR [Lactobacillus jensenii 269-3] gi|282932316|ref|ZP_06337751.1| transcriptional regulatory protein DltR [Lactobacillus jensenii 208-1] gi|238831822|gb|EEQ24156.1| transcriptional activator protein CopR [Lactobacillus jensenii 269-3] gi|281303537|gb|EFA95704.1| transcriptional regulatory protein DltR [Lactobacillus jensenii 208-1] Length = 223 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 4/113 (3%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG-EVFPL 149 D G DD + KP +E+LAR+ + RR + + N + +F D + E+ L Sbjct: 91 LDDGADDYLTKPFSLKELLARLRSKERR-EDNYNTKKMQLANLFLDVENQEISSRNSVRL 149 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 +E +L+YL+ N+ K ++ IFS ++ D EN+V ++S LR+KL+ Sbjct: 150 STKETELLQYLLLNKDKFLSTQTIFSHVWK--DSEENENIVWIYVSYLREKLK 200 >gi|194364248|ref|YP_002026858.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347052|gb|ACF50175.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 239 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/226 (24%), Positives = 99/226 (43%), Gaps = 22/226 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSL----EGFNSLEFEEWLQSSAREDVSAIEAFLIG-KG 57 ++++D A + D GD+G + G L L+ D ++ L G G Sbjct: 7 LIVEDDAHIADLLRMHLGDEGYDVAHAASGDGGLRL---LEQDGPWDALVLDVMLPGVDG 63 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +V + R + + VP+I IS S + + G DD + KP E++ARV A+ R Sbjct: 64 LQVCQRARAMARY--VPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLR 121 Query: 118 RLKVSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R + A E G +++ R V G L RE +L + + + A+ Sbjct: 122 RAEAMAQSARIDAGAIELGGLQLDPVARTASVDGNALELTPREFDLLLFFARHPDQVFAR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 ++ + ++G + E+ V +HI++LR K+ DP + +R L Sbjct: 182 MELLNQVWG-YQHDGYEHTVNTHINRLRSKIEP----DPANPRRLL 222 >gi|170782838|ref|YP_001711172.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157408|emb|CAQ02597.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 252 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 8/147 (5%) Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ R IRAH S VP++ ++ + ++ D+G DD + KP RE++ RV A+ R Sbjct: 56 LEVCRRIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLR 115 Query: 118 RL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R V GP + R+ G + L RE +L +L+ N + + + Sbjct: 116 RTVPEAVPEPPFVAGPFVLDLGAREIHQAGVMLSLTSREFDLLAFLLRNPRRVFGRDDLL 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL 201 +++G E + + V H+ +LR+K+ Sbjct: 176 RSVWGW--EIGDLSTVTVHVRRLREKI 200 >gi|154498537|ref|ZP_02036915.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC 29799] gi|150272605|gb|EDM99790.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC 29799] Length = 234 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 97/221 (43%), Gaps = 38/221 (17%) Query: 27 EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYP 82 EG+ +LE + LQ + +D + L+ ++ R IRA + P+I ++ Sbjct: 25 EGYETLEAYDGQSGLQLALEQDPDLVLLDLMLPKMNGFDVCRSIRAEGKNTPVIMLTARE 84 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---------VSNNRAETGPIRV 133 + + G DD + KP RE+LARV A RR + V +NR E G I V Sbjct: 85 EENDKVMGLELGADDYITKPFSMRELLARVKANIRRREMAGNAPAAPVGSNRLEAGRISV 144 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV--VE 191 D G+ L +RE +L +L A GK +FS EA+ ENV E Sbjct: 145 DQDLMVAYKDGKALDLTQREYELLRFLAARPGK------VFSR------EALMENVWNYE 192 Query: 192 SHISKLR------KKLRNKLGFDPVD-----SKRFLGYSID 221 ++ +R ++LR K+ DP ++R GY ++ Sbjct: 193 GYVGDVRAVDVAVRRLREKVEDDPAQPQIIVTRRGQGYLLN 233 >gi|332286933|ref|YP_004418844.1| two component response regulator [Pusillimonas sp. T7-7] gi|330430886|gb|AEC22220.1| two component response regulator [Pusillimonas sp. T7-7] Length = 229 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 6/151 (3%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RAETGPI 131 P++ ++ +LQ + + G DD + KP E+ AR+AA+ RR + R + G + Sbjct: 73 TPVLILTAQGALQDRVRGLNLGADDFLTKPFALEELEARLAALVRRSRGRQAPRMQCGSL 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 S+ R ++G + L RE+ L L+ G V K+Q+F+ ++ D + +E Sbjct: 133 IYDSESRAFGLEGAILHLTPREQAALAVLITRSGMPVEKSQLFNRVFE-HDSEAGLDAIE 191 Query: 192 SHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 + +LRKKL G D + + R LGY ++ Sbjct: 192 VVLHRLRKKL---AGSDVHIVTVRGLGYMLE 219 >gi|329929102|ref|ZP_08282895.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328936885|gb|EGG33317.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 232 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 89/203 (43%), Gaps = 12/203 (5%) Query: 13 DGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 D I + +++EGF + + EE L+ A D + ++ ++ + IR Sbjct: 11 DSSIGEMVESYLTMEGFQVVLAKDGEEALERFAERDYDLVLLDMMLPKISGMDFLKKIRE 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSNNRA 126 S VP++ +S G DD + KP E+ ARV A RR+ ++ Sbjct: 71 KSHVPVLIVSAKDGEVDKALGLGFGADDYITKPFSMVELTARVKAAIRRVTAYVIAPPTE 130 Query: 127 ETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + IRV D G+ L +E +IL+ M N K K IF++++ Sbjct: 131 QNKIIRVHELEMDLDHLTVTKNGQEIKLTAKELQILKLFMTNPKKVFTKQHIFTSVWN-D 189 Query: 182 DEAVEENVVESHISKLRKKLRNK 204 D +ENV+ H+S+LR K+ ++ Sbjct: 190 DYFGDENVINVHMSRLRDKIEDQ 212 >gi|319653605|ref|ZP_08007704.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317394804|gb|EFV75543.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 231 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 14/150 (9%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 E+ R IR +P+I +S S + G DD + KP E++ARV A RR +K Sbjct: 64 EVTRRIREQHNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFTPIELVARVNAQLRRFMK 123 Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ-I 173 ++ +A E G + + D R + G+ L +E IL YL+A+ K+V + I Sbjct: 124 LNQPKADIKTSLEYGGLVITPDQRTVTLYGKTIDLTPKEFDIL-YLLASHPKKVFNVENI 182 Query: 174 FSAIYGLFDEAVEE--NVVESHISKLRKKL 201 F ++G EA E N V HI LRKKL Sbjct: 183 FQQVWG---EAYFEGGNTVMVHIRTLRKKL 209 >gi|295837253|ref|ZP_06824186.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|295826427|gb|EFG64844.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 237 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 16/171 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR Sbjct: 70 VSLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFG 129 Query: 121 VSNNRAET------GPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + E GP+R V ++G + +G+ L E R+L A G ++ Sbjct: 130 HAGGGGEPVETGADGPLRFGDLEVDTEGMEVRREGKRIALTPTEMRLLLEFSAAPGTVLS 189 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + Q+ ++ + + VV+ H+ ++LR K+G D +++ R GY + Sbjct: 190 RDQLLERVWD-YGWGGDTRVVDVHV----QRLRAKIGQDRIETVRGFGYKL 235 >gi|262202521|ref|YP_003273729.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262204066|ref|YP_003275274.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262085868|gb|ACY21836.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087413|gb|ACY23381.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 244 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 7/146 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R + ++ ++ T+ G DD + KP RE++AR+ A+ RR + Sbjct: 69 VEVCRQLRTFTNAYIVMVTARADEVDTVVGLSVGADDYLTKPFRPRELMARIDAMLRRPR 128 Query: 121 VSNNRAETGPIRVFSDGRDP---EVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFS 175 + E+ P + DP EVQ E P L R E +LE L G ++ Q+ + Sbjct: 129 PTPT-GESHPRTIGELTLDPQGREVQVESTPVELTRTEFDVLEALTRRPGVVFSREQLLT 187 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 I+G D + +VVE H++ LR+KL Sbjct: 188 EIWGP-DWVGDAHVVEVHVASLRRKL 212 >gi|283797816|ref|ZP_06346969.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1] gi|291074501|gb|EFE11865.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1] Length = 228 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 6/152 (3%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---KVSNNRAET 128 ++P++ ++ S + D G DD + KP E AR+ + +R K Sbjct: 79 KIPVMMLTAKDSELDVVAGLDGGADDYMTKPFGILEFSARIRNLLKRFSDDKQEEKNLSV 138 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 G I + + R+ ++G+ L +E +L YLM N + V + ++ I+G +D E Sbjct: 139 GDISIDLEKREVRMRGQEVELTLKEYELLCYLMENTSRVVTREELLDRIWG-YDYDGETR 197 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ HI LR+KL + + R +GY I Sbjct: 198 TLDMHIKTLRQKLGE--AGHSIKTVRGVGYRI 227 >gi|260589217|ref|ZP_05855130.1| regulatory protein VanR [Blautia hansenii DSM 20583] gi|260540298|gb|EEX20867.1| regulatory protein VanR [Blautia hansenii DSM 20583] Length = 220 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 106/217 (48%), Gaps = 19/217 (8%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPR 65 ++ L+++GY+ VS ++ E ++Q++ D+ ++ L G GE+VL P+ Sbjct: 18 EKVLIQEGYM-------VS-HAYSGTEALLFMQNNT-PDLILLDLMLPGLSGEEVL--PK 66 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 I S +P+I +S ++ + +G D + KP E+LAR+ R+L + + Sbjct: 67 I----SDIPVIVMSAKVDVKDKVALLLNGAVDYITKPFDIDELLARIIVQLRKLDKATHS 122 Query: 126 AETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + +F D EV+ + L + E IL+ LM N + + KT + I + Sbjct: 123 EKLVFDEIFLDITTHEVRVCDQEVKLTKTEFAILKLLMENPKQIITKTILLDRISEDTPD 182 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E ++ HIS LRKKLR G D +++ +G+ + Sbjct: 183 CMESSL-RVHISNLRKKLREASGKDYIEAVWGIGFKM 218 >gi|212711730|ref|ZP_03319858.1| hypothetical protein PROVALCAL_02805 [Providencia alcalifaciens DSM 30120] gi|212685832|gb|EEB45360.1| hypothetical protein PROVALCAL_02805 [Providencia alcalifaciens DSM 30120] Length = 223 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 86/164 (52%), Gaps = 9/164 (5%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +I+R +P+I ++ ++ + + G +D + KP E+LARV +LKV Sbjct: 61 EILKILRTAKNIPVICLTARDAVDDRIKGLELGANDYLVKPFSFSELLARVK---NQLKV 117 Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + T I ++ + E G+ L R+E +L + + + + + +T I S ++ Sbjct: 118 NQPVSTTMTIADLKIDLTRHEVERGGQKIILTRQEFSLLLFFVLHCDEILPRTLIASEVW 177 Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G+ FD + N+++ I +LRKK+ ++ +++ R +GY ++ Sbjct: 178 GIDFDS--DTNIIDVAIRRLRKKIDDEFEIKLIETIRGMGYRLN 219 >gi|171319254|ref|ZP_02908370.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171095556|gb|EDT40520.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 239 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 24/210 (11%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-V 73 Y + DG EG LE W A+ L+ G LE+ R RA ++ Sbjct: 29 YEVVHSADGT--EGLRLLEQGNW---------DALILDLMLPGVDGLEICRRARAMARYT 77 Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPI 131 P+I S S + + G DD + KP E++ARV A+ RR+ ++R + G + Sbjct: 78 PIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDALARDSRIDAGTL 137 Query: 132 RVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 V DP V G L RE +L + + GK ++ + +A++G E Sbjct: 138 DVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLLNAVWGYRHEGY- 196 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 E+ V +HI++LR K+ DP + R L Sbjct: 197 EHTVNTHINRLRAKVEA----DPAEPVRIL 222 >gi|157148189|ref|YP_001455508.1| hypothetical protein CKO_04000 [Citrobacter koseri ATCC BAA-895] gi|157085394|gb|ABV15072.1| hypothetical protein CKO_04000 [Citrobacter koseri ATCC BAA-895] Length = 224 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 4/164 (2%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ + +R Q +P++ ++ ++ + + G DD + KP E+ AR+ A+ RR Sbjct: 60 LEVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFEIEELDARLRALLRRS 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + F D +Q + L RE+ +L LM R + V++ Q+F ++ Sbjct: 120 AGQVQELQQLGDLAFHDEGYFLLQAQPLALTPREQALLTVLMYRRTRPVSRQQLFEQVFS 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 L DE E+ +E +I +LRKKL+ + + R LGY ++ Sbjct: 180 LSDEVSPES-IELYIHRLRKKLQGS--NVRITTLRGLGYVLECG 220 >gi|149191185|ref|ZP_01869443.1| DNA-binding response regulator GltR [Vibrio shilonii AK1] gi|148835023|gb|EDL52002.1| DNA-binding response regulator GltR [Vibrio shilonii AK1] Length = 242 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 10/134 (7%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 L+ D L K G+ +DGV +E F +++ D+ ++ L G+ L Sbjct: 18 LLLDEYLTKSGFQVSTAEDGVEMELF--------IKAKGYPDLILLDVML--PGDDGFTL 67 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 + +R SQVP+I ++ + + G DD + KP R+++AR+ A+ RR ++ Sbjct: 68 CQRVRRDSQVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRRTHLNG 127 Query: 124 NRAETGPIRVFSDG 137 ++AE P R G Sbjct: 128 DKAEETPPRTIDFG 141 >gi|55979989|ref|YP_143286.1| response regulator [Thermus thermophilus HB8] gi|55771402|dbj|BAD69843.1| response regulator [Thermus thermophilus HB8] Length = 223 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 7/124 (5%) Query: 93 SGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152 G DD + KP RE+LAR+ A+ RR R GP+ V GR ++GE L Sbjct: 94 EGADDYLGKPFSLRELLARIKALLRRAG-KEGRRRFGPLEVDLGGRRAYLEGEPLRLSPT 152 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E +L G+ + ++ ++G E E VV++++ LRKKLR+ DP ++ Sbjct: 153 EMNLLLVFAQAPGRVFTRGELLERVWGPEFEG-SERVVDAYVRLLRKKLRD----DP-EA 206 Query: 213 KRFL 216 RF+ Sbjct: 207 PRFI 210 >gi|19551523|ref|NP_599525.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62389170|ref|YP_224572.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|21323036|dbj|BAB97665.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41324503|emb|CAF18843.1| PUTATIVE TWO COMPONENT RESPONSE REGULATOR [Corynebacterium glutamicum ATCC 13032] Length = 222 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/225 (26%), Positives = 103/225 (45%), Gaps = 30/225 (13%) Query: 13 DGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG------KGEKVLELPRI 66 D IA F G+ EGF E ++ AR + ++ G VLE R Sbjct: 10 DAGIADFIVRGLIREGFECEVTESGAEAFARAHSGDFDLMVLDLGLPHMDGTDVLEQLRN 69 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 ++ +P+I ++ +++ L + G DD + KP E+LAR+ +L+++ + Sbjct: 70 LQV--TLPIIVLTARTNIEDRLRTLEGGADDYMPKPFQFAELLARI-----KLRLAKHTP 122 Query: 127 ETGPI--RVFSDGRDPE---------VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + P RV +G D E + G L RRE +LE LM + G+ +++ Q+ Sbjct: 123 QETPTDARVLRNG-DLELDLRTQRVLIDGSWHDLSRREVDLLETLMRHPGQILSRVQLLR 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + D NVV+ +I LRK K+G V++ R GY + Sbjct: 182 LVWDM-DWDPGSNVVDVYIRALRK----KIGAHRVETIRGSGYRL 221 >gi|113474756|ref|YP_720817.1| two component transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110165804|gb|ABG50344.1| two component transcriptional regulator, winged helix family [Trichodesmium erythraeum IMS101] Length = 243 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 8/143 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR+ Sbjct: 71 LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGGNG 130 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ + IR+ ++ R E L E +LE L++ G+ ++++I ++G Sbjct: 131 IPSSGVIQVSTIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 190 Query: 180 LFDE-AVEENVVESHISKLRKKL 201 E V+ VV+ HIS+LR KL Sbjct: 191 YTPERHVDTRVVDVHISRLRAKL 213 >gi|330466864|ref|YP_004404607.1| winged helix family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328809835|gb|AEB44007.1| two component transcriptional regulator, winged helix family protein [Verrucosispora maris AB-18-032] Length = 213 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 8/143 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R++R + VP+I + Q+ + +G DD + KP + AR+ ++ RR+ + Sbjct: 49 RMLRGITDVPIIIATARDDEQSVVKLLRAGADDYMVKPFTGAHLDARITSVLRRVG-RAS 107 Query: 125 RAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 RAE G +RV R ++ GE L R+E +L YL A G+ V++ ++ ++ Sbjct: 108 RAEQPVVLSVGGLRVDLGERSAQLDGESLALTRKEFDLLAYLAARPGRVVSRRELLEEVW 167 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 E+ ++ H+ LR+K+ Sbjct: 168 -RQPSVGEDQTIDVHLYWLRRKM 189 >gi|313683111|ref|YP_004060849.1| two component transcriptional regulator, winged helix family [Sulfuricurvum kujiense DSM 16994] gi|313155971|gb|ADR34649.1| two component transcriptional regulator, winged helix family [Sulfuricurvum kujiense DSM 16994] Length = 220 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 80/163 (49%), Gaps = 12/163 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + +R S +P+I S L + + G DD + KP RE++AR+ ++ RR+ Sbjct: 61 LDVCKALRERSDIPIIISSARSDLGDKVIALELGADDYLPKPYEPRELVARIQSLLRRIN 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +A + RV G E GE+ PL R E +L L+ +R + +++ I + + Sbjct: 121 GKTIQASSEMFRVDETGIYKE--GELLPLTRAEFELLALLIKHRRQIISRDFIANNV--- 175 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 E+++ E I L ++R K+ +P + S R +GY Sbjct: 176 --ESIQWESSERSIDVLISRIRQKIEANPKHPTLIRSIRGMGY 216 >gi|301163703|emb|CBW23257.1| putative two component system response regulator [Bacteroides fragilis 638R] Length = 225 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 18/175 (10%) Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G G +LE + +R V +I D SL + + G DD + KP H E+ AR+ + Sbjct: 57 GNGLNLLEQLKKMRKRENVIIISAKD--SLDDKVQGLELGADDYLPKPFHLAELNARIKS 114 Query: 115 IYRR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 + RR ++++N R +VF D ++ E L R+E IL Y G+ Sbjct: 115 VIRRQRRDGEMDIRLANIRIVPDTFQVFVDDKEIE-------LNRKEYDILLYFANRPGR 167 Query: 167 RVAKTQIFSAIYGLFDEAVEE-NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V K + +++G + V+ + + + I LRKKL++ + + GY + Sbjct: 168 LVNKNTLAESVWGDHIDQVDNFDFIYAQIKNLRKKLKDAGALAELKAVYGFGYKM 222 >gi|294631812|ref|ZP_06710372.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] gi|292835145|gb|EFF93494.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] Length = 229 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 11/161 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + +P+I ++ +++ + + G DD V KP E+LAR+ A+ RR + Sbjct: 68 IRKRTAIPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRRTVHEDTTG 127 Query: 127 E-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G +R+ R V G V L R+E +L L G + QI S ++ Sbjct: 128 DDGDGALSLGSVRIELPTRQVSVAGAVVQLTRKEFDLLALLAQRPGVVFRREQIISEVWR 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E +E H++ LR KLR + V R +GY + Sbjct: 188 TSWEGTGRT-LEVHVASLRAKLRMPALIETV---RGVGYRL 224 >gi|239993573|ref|ZP_04714097.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii ATCC 27126] Length = 237 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 15/140 (10%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI---RVFSDG-------RDP 140 + G DD + KP +HRE++AR+ AI RR +N + TG +F +G + Sbjct: 98 LEMGADDYLPKPFNHRELVARIKAIVRR----HNLSSTGGAVEQDLFVNGIFLSPSSQLA 153 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 +V L E IL LM N +RV K +I I G +A + + ++ H+S LRKK Sbjct: 154 KVDDVELTLTTTEFLILRLLMLNAAQRVTKEEISLKILGKPLQAFDRS-IDMHVSNLRKK 212 Query: 201 LRNKLGFDPVDSKRFLGYSI 220 + + + + R +GY + Sbjct: 213 ISAVAVDEKIKTIRGVGYML 232 >gi|227529845|ref|ZP_03959894.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540] gi|227350329|gb|EEJ40620.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540] Length = 241 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 9/151 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + +RA P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 68 LEVAKRVRAKHTTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQA 127 Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 +N + G + + + +GE L RE +L YL + G+ + + Sbjct: 128 AVKAPAEEDNNTDIQVGDLVIHPEAYTVSKRGENINLTHREFELLHYLAEHIGQVINREH 187 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++G +D + V+ + +LR+K+ + Sbjct: 188 LLQTVWG-YDYFGDVRTVDVTVRRLREKIED 217 >gi|229542343|ref|ZP_04431403.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229326763|gb|EEN92438.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 236 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 22/221 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY DG +LE E +Q D+ ++ L + +E+ R +R Sbjct: 22 LTKEGYTVYCAYDG-----EEALEKVEEVQP----DLIVLDIMLPKRDG--MEVCREVRK 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS------- 122 +P+I ++ S + + G DD V KP RE++ARV A RR + + Sbjct: 71 KYNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQQTPAAPGEE 130 Query: 123 --NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N G + + D +GE L RE +L YL + G+ + + + ++G Sbjct: 131 EESNEIAIGSLVIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTREHLLETVWG- 189 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +D + V+ + +LR+K+ N + + ++R +GY + Sbjct: 190 YDYYGDVRTVDVTVRRLREKVEDNPSHPEWIVTRRGVGYYL 230 >gi|322831204|ref|YP_004211231.1| transcriptional regulator [Rahnella sp. Y9602] gi|321166405|gb|ADW72104.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 220 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 6/155 (3%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRA 126 R +P++ ++ +L+ +D D+G DD + KP E+ ARV A+ RR + S+N+ Sbjct: 68 RQSISLPVLILTARDALEDRVDGLDAGADDYLIKPFALVELQARVRALIRRYQGQSDNQI 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 G +++ + + + +E IL LM G+ V + + +Y D+ + Sbjct: 128 SVGNLKINLSSQQAYLNDAPVEVTPKEFAILSRLMMRAGQTVNRELLQQDLYTWQDD-LG 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 N +E H+ LR+ KLG + + + R +GY ++ Sbjct: 187 SNTLEVHVHNLRR----KLGKEVIRTVRGIGYRLE 217 >gi|302558018|ref|ZP_07310360.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] gi|302475636|gb|EFL38729.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] Length = 229 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 10/160 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124 IR + P+I ++ +++ + + G DD V KP E+LAR+ A+ RR + + Sbjct: 69 IRKRTGTPVIMVTARSDVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRRSVPEEATG 128 Query: 125 RAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ET GP+R+ R V G L R+E +L L G + QI S ++ Sbjct: 129 STETELRLGPVRIELPTRQVTVNGAPVQLTRKEFDLLALLAQRPGVVFRREQIISEVWRT 188 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E +E H++ LR KLR + V R +GY + Sbjct: 189 SWEGTGRT-LEVHVASLRAKLRMPALIETV---RGVGYRL 224 >gi|291520925|emb|CBK79218.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 209 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 8/141 (5%) Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDP 140 T + FD G D + KP RE+LARV I + + N + G + +D Sbjct: 73 NTIVRAFDEGAQDYIVKPFRIRELLARVRRILS-VNIKNGEKDNIIYMGHAAIHTDEAKV 131 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 V ++ L E R+L +N+G + + QI I+ VE+N + ++ +LR+K Sbjct: 132 YVNDKIIELTALEYRLLLIFASNKGILLTRQQILDKIWDADGNFVEDNTLTVYVKRLREK 191 Query: 201 LRNKLGFDPVDSKRFLGYSID 221 L + + V R +GY +D Sbjct: 192 LGEAIHIETV---RGMGYRVD 209 >gi|302535152|ref|ZP_07287494.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444047|gb|EFL15863.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 237 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 36/231 (15%) Query: 9 ALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 AL +DG++ DG+S LE F + R D++ ++ + G + L R I Sbjct: 22 ALERDGFVVTAMPDGLSGLESFRA----------NRPDIALLDVMV--PGMDGVSLCRRI 69 Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-------K 120 R S VP+I +S + ++G DD V KP ++AR+ A+ RR Sbjct: 70 RDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLVARIRAVLRRFGHAGGPQN 129 Query: 121 VSNNRAET-----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 +N A G + V ++G + G L E R+L + G ++ Sbjct: 130 GANGSAGADGSDERGVLSFGDLEVDTEGMEVRRAGAPVALTPTEMRLLLEFSSAPGTVLS 189 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ ++ +D + VV+ H+ ++LR K+G D +++ R GY + Sbjct: 190 RDRLLERVWD-YDWGGDTRVVDVHV----QRLRTKIGQDRIETVRGFGYKL 235 >gi|315498979|ref|YP_004087783.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] gi|315416991|gb|ADU13632.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] Length = 224 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 97/202 (48%), Gaps = 17/202 (8%) Query: 17 ALFGDDGVSLEGFNSL---EFEEWLQSSARE---DVSAIEAFLIG-KGEKVLELPRIIRA 69 AL G+S +GF S+ + E L++ RE DV ++ + G G +LE+ R Sbjct: 14 ALTMQKGLSEQGFESVVTHDGEAGLKA-LREGEFDVVVLDRMMPGLDGVSMLEIAR--SE 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS--NNRAE 127 VP++ +S L+ + +G DD + KP E++AR+ A+ RR Sbjct: 71 GMDVPVLFLSALGELEDRVYGLKAGADDYLVKPYALVELVARLEALLRRKDTGAVETTLR 130 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 G + + R + L RE ++LE+LM + G+ V +T + ++ FD + Sbjct: 131 VGDLEMNLISRVVKRGNSEIDLQPREFQLLEFLMRHVGQSVTRTMLLEKVWAYHFDP--Q 188 Query: 187 ENVVESHISKLRKKLRNKLGFD 208 NV++ HIS+LR KL GFD Sbjct: 189 TNVIDVHISRLRAKLDK--GFD 208 >gi|229017879|ref|ZP_04174762.1| Sensor histidine kinase [Bacillus cereus AH1273] gi|229024084|ref|ZP_04180555.1| Sensor histidine kinase [Bacillus cereus AH1272] gi|228737180|gb|EEL87704.1| Sensor histidine kinase [Bacillus cereus AH1272] gi|228743470|gb|EEL93587.1| Sensor histidine kinase [Bacillus cereus AH1273] Length = 232 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 13/207 (6%) Query: 27 EGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+N + + +E LQ + +V + ++ LE+ + +R ++ VP++ +S Sbjct: 26 EGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRNGLEVCQEVRENNTVPILMLSAKAE 85 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN---RAETGPIR-----VFS 135 + +G DD + KP + E++ARV A+ RR N + E G IR + Sbjct: 86 DMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSFQNAATPKNEDGIIRIRTVEIHK 145 Query: 136 DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 +V GE L E IL L +N G+ + +IF ++ D V HIS Sbjct: 146 HNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIFERVWN-EDGYGSNKTVMVHIS 204 Query: 196 KLRKKLRNKL-GFDPVDSKRFLGYSID 221 LR KL + G + + +GY I+ Sbjct: 205 NLRDKLETVMNGEKLIHTVWGVGYKIE 231 >gi|229190642|ref|ZP_04317638.1| Sensor histidine kinase [Bacillus cereus ATCC 10876] gi|228592775|gb|EEK50598.1| Sensor histidine kinase [Bacillus cereus ATCC 10876] Length = 231 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 9/149 (6%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + +R ++ VP++ +S + +G DD + KP + E++ARV A+ RR Sbjct: 62 LEVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSS 121 Query: 121 VSN---NRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N + E G IR+ S +V GE L E IL L +N G+ + + Sbjct: 122 FQNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEE 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 IF ++ D V HIS LR KL Sbjct: 182 IFERVWN-EDGYGSNKTVMVHISNLRDKL 209 >gi|226948065|ref|YP_002803156.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226842279|gb|ACO84945.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 230 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 6/145 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 EL IR +P+I IS ++ G DD + KP E+ AR+ + RR K Sbjct: 65 ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124 Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + I + D R+ + + L RE IL+ LM K K+ +F + Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIYNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++ + ++N + HIS LR KL Sbjct: 185 VWS-SEYLCDDNTINVHISNLRNKL 208 >gi|165869483|ref|ZP_02214142.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|227815305|ref|YP_002815314.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|254755431|ref|ZP_05207465.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|164714923|gb|EDR20441.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|227006071|gb|ACP15814.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] Length = 232 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/176 (31%), Positives = 79/176 (44%), Gaps = 22/176 (12%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +EL R IR +P+I +S S + F +G DD + KP E +ARV A RR Sbjct: 63 IELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYT 122 Query: 121 VSNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT- 171 N A + + R + GE L + E IL YLMA RV T Sbjct: 123 YFNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEIL-YLMAAAKNRVFTTE 181 Query: 172 QIFSAIYGLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRF-----LGYSID 221 +I+ +++ + A E N V HI+ +LRNK+ DP + K +GY I+ Sbjct: 182 EIYESVWK--ERAYESNNTVMVHIA----RLRNKIEEDPKEPKFIQNVWGVGYKIE 231 >gi|157363824|ref|YP_001470591.1| two component transcriptional regulator [Thermotoga lettingae TMO] gi|157314428|gb|ABV33527.1| two component transcriptional regulator, winged helix family [Thermotoga lettingae TMO] Length = 228 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 70/138 (50%), Gaps = 3/138 (2%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA-ETGP 130 VP++ ++ ++ + G DD + KP RE+LAR+ ++ RR ++ Sbjct: 77 NVPILILTALDAINDKVRGLSCGADDYLTKPFDFRELLARIKSLIRRSNITKGEEINFKG 136 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 +++ S R V+ V + +RE +LE + N G ++ +I ++ ++ ++ NV+ Sbjct: 137 LKLNSRSRQVTVEDTVLKMSKREFALLELFLRNPGIVFSREEIMEKVWE-NEKIIKSNVI 195 Query: 191 ESHISKLRKKLRNKLGFD 208 + +I LR KL+ G+D Sbjct: 196 DVYILYLRNKLK-PYGYD 212 >gi|300721189|ref|YP_003710457.1| response regulator in two-component regulatory system with CpxA regulates genes involved in folding/degrading periplasmic proteins OmpR family protein [Xenorhabdus nematophila ATCC 19061] gi|139522417|gb|ABO77646.1| CpxR [Xenorhabdus nematophila] gi|297627674|emb|CBJ88197.1| response regulator in two-component regulatory system with CpxA, regulates genes involved in folding/degrading periplasmic proteins (OmpR family) [Xenorhabdus nematophila ATCC 19061] Length = 230 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 20/195 (10%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHSQVPLIGISD 80 + +EGFN + + Q+ D S+I+ L+ + +E + +R + Q P+I ++ Sbjct: 21 LEMEGFNVVIAHDGEQALQYID-SSIDLLLLDIMMPRKNGIETLKELRQYHQTPVIMLTA 79 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETG-PI-----RVF 134 S + + G DD + KP + RE++AR+ AI RR S +A+ G PI Sbjct: 80 RGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILRRSNWSEQQADIGTPILEIDKLQL 139 Query: 135 SDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL----FDEAVEENV 189 S GR + G + L E +L L + G+ V++ + + G FD A Sbjct: 140 SPGRQEASFDGTILDLTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRA----- 194 Query: 190 VESHISKLRKKLRNK 204 ++ HIS LR+KL N+ Sbjct: 195 IDMHISNLRRKLPNR 209 >gi|110834226|ref|YP_693085.1| DNA-binding heavy metal response regulator [Alcanivorax borkumensis SK2] gi|254429959|ref|ZP_05043666.1| response regulator receiver domain protein [Alcanivorax sp. DG881] gi|110647337|emb|CAL16813.1| DNA-binding heavy metal response regulator, putative [Alcanivorax borkumensis SK2] gi|196196128|gb|EDX91087.1| response regulator receiver domain protein [Alcanivorax sp. DG881] Length = 222 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 100/224 (44%), Gaps = 12/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL--QSSAREDVSAIEAFLIGKGEK 59 +L++D L+ +G A G S++ + L Q S R + + G G Sbjct: 3 LLLVEDDYLLTNGLSAQLEKAGFSVDTARTAREARHLGQQESYRAGILDL-GLPDGNGLD 61 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 VL+ R + P++ ++ Q ++ +G DD + KP E++AR+ AI RR Sbjct: 62 VLKQWRTHKV--SFPVLILTARGDWQDKVNGLKAGADDYLAKPFQTEELIARLHAIVRRS 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T + R G+ L E R+L LM+ G+ +K Q+ + Sbjct: 120 EGRIMDTLTAGRFELDENRQTLRAGDETEHSLTGTEFRLLRCLMSRPGQVFSKEQLLDQL 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 Y + D+ ENV+E+++ +LRK +G D + ++R GY D Sbjct: 180 YSI-DDIPSENVIEAYVRRLRK----LVGPDTIKTRRGQGYLFD 218 >gi|119386803|ref|YP_917858.1| two component transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377398|gb|ABL72162.1| two component transcriptional regulator, winged helix family [Paracoccus denitrificans PD1222] Length = 184 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R IR + P++ ++ ++ L F G DD + KP + E++AR+ AI RR Sbjct: 60 MEVLRQIRMSRIDTPILILTGSDDTESKLRGFGFGADDYMTKPFNRDELVARIQAIIRRS 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K S + TG + V D R EV G L +E +ILE L +G + K + Y Sbjct: 120 KGHSQSVIRTGEMVVNLDARSVEVGGRAVNLTGKEYQILELLSLRKGTTLTKEMFLNHFY 179 >gi|116691688|ref|YP_837221.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116649688|gb|ABK10328.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] Length = 221 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/215 (26%), Positives = 104/215 (48%), Gaps = 20/215 (9%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIR 68 L + G+ DG + G +E R D+ ++A L G G VL R +R Sbjct: 20 LARLGHAVDLETDGATANGLLRVE---------RFDLVVLDANLPGMDGFTVL---RHLR 67 Query: 69 AH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 A S P++ ++ ++ + G DD + KP +RE+ ARV A+ RR N Sbjct: 68 ASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHANDVL 127 Query: 128 T-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAV 185 T G + + R E+ + L R+E +LE ++A+R +R+ +K ++ + ++ +E Sbjct: 128 TLGGLVIDRSSRLAELDSQPLSLSRQEFALLE-ILASRPQRIFSKEELLNQLFSFGNEPT 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N VE +++++RKKL+ + + R +GY I Sbjct: 187 -ANAVEQYVTRVRKKLQGS--SVEIRTARGMGYQI 218 >gi|295680605|ref|YP_003609179.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295440500|gb|ADG19668.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 224 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 6/151 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY-RRLKVSNNRAETG 129 S+VP++ ++ L + D G DD V KP H E+LAR+ A+ RR +++R Sbjct: 71 SKVPILILTARDDLDARVQGLDFGADDYVLKPFHLPELLARIRAVLRRRAGFASSRLGND 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + D R G L RE ++ + G +++ Q+ +YG + + VE N Sbjct: 131 TLNLDLDKRTLCCNGVSSVLSAREFALMFAFLERPGTILSRDQLEGKLYG-WGKEVESNA 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+ I +RK K G + + R LG+++ Sbjct: 190 VDVLIHGVRK----KFGQSVIRNVRGLGWTV 216 >gi|304318074|ref|YP_003853219.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779576|gb|ADL70135.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 232 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 15/164 (9%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 RI+R P++ ++ + + G DD V KP RE++ARV A RR ++N Sbjct: 66 RILRQTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRRSGINNG 125 Query: 125 RAETGPIRVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I V + D E G L RE +L++L+ANRG ++ + ++G Sbjct: 126 EGMSNVIIVNNLSIDLSKYKVEKNGRPIELTSREFDLLKFLVANRGLIFSREMLLEKVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 ++ + V+ I +LR+K+ + DP + +KR +GY Sbjct: 186 -YEYFGDVRTVDVTIRRLREKIED----DPANPRYIHTKRGVGY 224 >gi|228933286|ref|ZP_04096142.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826447|gb|EEM72224.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 234 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ ++ + F G DD + KP E++ RV A+ +R +++ +++ Sbjct: 77 LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 136 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + + + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 137 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 195 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + + + + R LGY ++ Sbjct: 196 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 231 >gi|227534581|ref|ZP_03964630.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631045|ref|ZP_04674076.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|227187830|gb|EEI67897.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527328|gb|EEQ66329.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 246 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNN 124 +R SQ+P+I +S + + +G DD V KP + E++ARV ++ RR + V+N Sbjct: 85 VRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQNEVTNT 144 Query: 125 RA---ETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYG 179 E GP+ + D + + G+ L E IL YL+A+ RV + +IF ++ Sbjct: 145 EPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGIL-YLLASHPNRVFSADEIFERVWQ 203 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + V V H+S LR K+ G +++ +GY ++ Sbjct: 204 Q-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 245 >gi|163842887|ref|YP_001627291.1| transcriptional activator protein copR [Brucella suis ATCC 23445] gi|163673610|gb|ABY37721.1| Transcriptional activator protein copR [Brucella suis ATCC 23445] Length = 235 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 13/156 (8%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--- 128 + P++ +S + + +G DD + KP E+LARV + RR S A+T Sbjct: 72 ETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRR--SSPREADTIYR 129 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 G + + Q L RE R+LEYLM + G+ V +T + ++ FD + Sbjct: 130 VGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVWNYHFDP--Q 187 Query: 187 ENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSI 220 NV++ HIS+LR K+ GFD + + R GY + Sbjct: 188 TNVIDVHISRLRSKIEK--GFDEPLLHTVRGAGYML 221 >gi|159043004|ref|YP_001531798.1| two component transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157910764|gb|ABV92197.1| two component transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 227 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 15/178 (8%) Query: 48 AIEAFLIGKGEKVLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR 106 AI ++G V EL R RAH + +P++ +S ++ +G DD V KP H Sbjct: 50 AIVDVMLGSDSGV-ELVRTARAHGATLPILMLSALSGVEDRATGLAAGADDYVVKPFHFD 108 Query: 107 EILARVAAIYRRLKVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163 E++A RL+V +RA P R+ R E+ + L RE +L L+ + Sbjct: 109 ELVA-------RLRVQEHRALAQRVSPARLIRTSRRLEMGPDSVTLTEREFDLLALLIRS 161 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++Q+ + ++ + A ENVV+ ++ LR+KL GF+ + + R G+ I Sbjct: 162 GEDPQPRSQLHATLWA-AEGASTENVVDVYVGYLRRKLETADFGFE-IKTVRNRGFCI 217 >gi|104781224|ref|YP_607722.1| DNA-binding response regulator [Pseudomonas entomophila L48] gi|95110211|emb|CAK14918.1| putative DNA-binding response regulator [Pseudomonas entomophila L48] Length = 226 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 11/154 (7%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVSNNRAETGP 130 P++ IS + + +G DD + KP E+ ARV + RR ++ R + Sbjct: 74 TPILMISALSDVDERVRGLRAGGDDYLTKPFASDEMAARVEVLLRRNSTPMTQTRLQVAD 133 Query: 131 IR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVE 186 + + + R E + P E ++LEYLM + G+ + + IF ++G FD Sbjct: 134 LELDLISHEARRGEQSLNLLP---TEYKLLEYLMRHSGQVITRMMIFEEVWGYHFDPGT- 189 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+++ HI +LRKK+ + + + R GY+I Sbjct: 190 -NLIDVHIGRLRKKIDSPGQTPLIRTVRGSGYAI 222 >gi|78221908|ref|YP_383655.1| two component transcriptional regulator [Geobacter metallireducens GS-15] gi|78193163|gb|ABB30930.1| two component transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 220 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 6/134 (4%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGE-VFPL 149 D G DD + KP E+LAR+ A+ RR S T + V GE L Sbjct: 91 LDLGADDYLVKPFAVGELLARIRAVSRRQTGSAAPLLTNGVVTLDPVSKEAVCGERRCRL 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 RE +L+ L+ G +++ ++ + IYG ++E VE N VE I +RK KLG + Sbjct: 151 TAREFSLLQALLVRPGAILSRDELETRIYG-WNEEVESNAVEFLIHSVRK----KLGSES 205 Query: 210 VDSKRFLGYSIDWN 223 + + R +G+ +D N Sbjct: 206 IRNVRGMGWMVDRN 219 >gi|729183|sp|Q02540|COPR_PSESM RecName: Full=Transcriptional activator protein CopR gi|151181|gb|AAA25803.1| transcriptional activator [Pseudomonas syringae] Length = 227 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 8/165 (4%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 E+ R +R Q VP++ ++ + + + G DD + KP E+LARV + RR Sbjct: 61 EVIRRLRTAGQPVPVLFLTARDGVDDRVKGLELGADDYLVKPFALSELLARVRTLLRRGS 120 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 L+V + + G ++V R G+ L +E +LE LM +G+ ++K+ I S + Sbjct: 121 SLQVQTS-LQIGDLQVDLLKRRATRGGKRIELTAKEFALLELLMRRQGEVLSKSLIASQV 179 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + FD + NV+E I +LR K+ + + + R +GY ++ Sbjct: 180 WDMNFDS--DTNVIEVAIRRLRAKIDDDFEVKLLHTCRGMGYMLE 222 >gi|16081017|ref|NP_391845.1| two-component response regulator YxdK [Bacillus subtilis subsp. subtilis str. 168] gi|221311939|ref|ZP_03593786.1| hypothetical protein Bsubs1_21391 [Bacillus subtilis subsp. subtilis str. 168] gi|221316263|ref|ZP_03598068.1| hypothetical protein BsubsN3_21302 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321175|ref|ZP_03602469.1| hypothetical protein BsubsJ_21250 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325459|ref|ZP_03606753.1| hypothetical protein BsubsS_21401 [Bacillus subtilis subsp. subtilis str. SMY] gi|321313531|ref|YP_004205818.1| two-component response regulator YxdK [Bacillus subtilis BSn5] gi|1176993|sp|P42421|YXDJ_BACSU RecName: Full=Transcriptional regulatory protein yxdJ gi|709991|dbj|BAA03300.1| hypothetical protein [Bacillus subtilis] gi|2636512|emb|CAB16002.1| two-component response regulator [YxdK] [Bacillus subtilis subsp. subtilis str. 168] gi|291486589|dbj|BAI87664.1| hypothetical protein BSNT_06087 [Bacillus subtilis subsp. natto BEST195] gi|320019805|gb|ADV94791.1| two-component response regulator (YxdK) [Bacillus subtilis BSn5] Length = 229 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 7/162 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------ 118 R IR HS P+I IS + ++G DD + KP + +LA++ + RR Sbjct: 65 RQIRQHSTSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYA 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K E +++F + + Q E L ++E ++LE L+ K ++ ++ + Sbjct: 125 AKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKESKLLEVLLERGEKVTSRDRLMEKTW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +++N + +I++LRKKLR +++ R GY + Sbjct: 185 DT-DIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQL 225 >gi|327473497|gb|EGF18917.1| nisin biosynthesis regulatory protein NisR [Streptococcus sanguinis SK408] Length = 253 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 12/171 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +E + IR P+I +S + + + + G DD + KP ++ +A+V + +R Sbjct: 86 IEFCQQIRKEINSPIIFVSALDTDEGIIQALNIGGDDFIVKPFSLQQFIAKVNSHLKREE 145 Query: 119 ---LKV---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 LKV + R PI ++ + R V+ + L RE ILE L N K +K + Sbjct: 146 RAKLKVEKEARKRRSIPPIEIYLEERMLYVENKPLSLTYREYNILELLSRNPYKVFSKEE 205 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 I+ +Y A+ ++ E +I ++R K + G +P+ + R GY WN Sbjct: 206 IYEQVYDEESSALFRSISE-YIYQIRVKF-SSFGINPIKTIRGTGYK--WN 252 >gi|325523766|gb|EGD02019.1| two component transcriptional regulator [Burkholderia sp. TJI49] Length = 221 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 83/159 (52%), Gaps = 7/159 (4%) Query: 65 RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +RA S P++ ++ ++ + G DD + KP +RE+ ARV A+ RR Sbjct: 64 RNLRASGSTTPVLLLTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHA 123 Query: 124 NRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLF 181 N T G + + R E+ G+ L R+E +LE ++A+R +R+ +K ++ + ++ Sbjct: 124 NDVLTLGGLVIDRSSRLAELDGQPLSLSRQEFALLE-ILASRPQRIFSKEELLNQLFSFG 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E N VE +++++R+KL + + R +GY I Sbjct: 183 NEPT-ANAVEQYVTRVRRKLSGS--SVEIRTARGMGYQI 218 >gi|295677593|ref|YP_003606117.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] gi|295437436|gb|ADG16606.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 265 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 17/169 (10%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA +S +P++ ++ S+ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 118 Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A GP V GR V +V L RE +LE L+ G+ V+K Q Sbjct: 119 -----GAGGGPTVVRHGSLSFDQVGRIAYVNDQVIDLSARELGLLEVLLQRIGRLVSKEQ 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + E V N +E ++ +LRKK+ G + + R LGY ++ Sbjct: 174 LVDHLCE-WGEEVSNNAIEVYVHRLRKKIEPS-GVRII-TVRGLGYCLE 219 >gi|255319403|ref|ZP_05360619.1| transcriptional regulator protein [Acinetobacter radioresistens SK82] gi|262380867|ref|ZP_06074018.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255303539|gb|EET82740.1| transcriptional regulator protein [Acinetobacter radioresistens SK82] gi|262297502|gb|EEY85420.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 228 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 3/144 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +R S +P+I ++ + + G DD + KP +E++ARV A+ RRL Sbjct: 61 LTICRKVREQSDIPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLRRLD 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-G 179 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 121 RKAEPEQNSLFRIDKAQQRIWYQQKSLNLTPTEFRLLELFLEHVGQVYSRAQLLDHINPD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRN 203 FD V + V++SHI LR+K+ + Sbjct: 181 SFD--VADRVIDSHIKNLRRKITD 202 >gi|291299613|ref|YP_003510891.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568833|gb|ADD41798.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 100/223 (44%), Gaps = 32/223 (14%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE---DVSAIEAFLIG-KGEKVLELP 64 L +GY +DG + GF S AR+ DV ++ L G G +V Sbjct: 19 GLTAEGYGVDVANDGTT--GF----------SMARQNPYDVIILDIMLPGMNGYQVCR-- 64 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSN 123 ++ A + P++ ++ D D G DD + KP + AR+ A+ RR + + Sbjct: 65 KLREAEVRTPILMLTAKDGEHDEADGLDLGADDYLTKPFSFVVLQARIRALLRRSVSTAP 124 Query: 124 NRAETGPIRVFSDGRDPEVQ----GEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E G + + DP + GE L +E +LEYL + G+ V+KT++ ++ Sbjct: 125 TVWEFGDLVI-----DPAAKTVRRGEADISLTAKEFAVLEYLASRAGEVVSKTEVLEHVW 179 Query: 179 GL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D V N+VE +IS LR+KL G + + R GY + Sbjct: 180 DFAYDGDV--NIVEVYISYLRRKLDAPFGRQAITTLRGAGYRL 220 >gi|228927049|ref|ZP_04090115.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121535|ref|ZP_04250762.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228661999|gb|EEL17612.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228832784|gb|EEM78355.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 228 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ ++ + F G DD + KP E++ RV A+ +R +++ +++ Sbjct: 71 LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 130 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + + + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 131 IQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 189 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + + + + R LGY ++ Sbjct: 190 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 225 >gi|255305139|ref|ZP_05349311.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 231 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 14/142 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S++P++ ++ + F++G DD + KP +E+L RV AI +R+ R Sbjct: 70 LRKTSKIPVLMLTARGEAEDKFVGFENGADDYLLKPFLPKELLFRVQAILKRVYPEKER- 128 Query: 127 ETGPIRVFSDGRDPEVQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +VF D +++ GE L +E ++ E L N+G+ V + AI G Sbjct: 129 -----KVFFDAATVDLEKAIVQRSGENISLTAKEFQLFEKLYENQGRIVTTGALCQAICG 183 Query: 180 LFDEAVEENVVESHISKLRKKL 201 F + E+ + +HI LR+K+ Sbjct: 184 DFWQGY-ESTLATHIRHLREKI 204 >gi|183599417|ref|ZP_02960910.1| hypothetical protein PROSTU_02892 [Providencia stuartii ATCC 25827] gi|188021661|gb|EDU59701.1| hypothetical protein PROSTU_02892 [Providencia stuartii ATCC 25827] Length = 231 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 2/150 (1%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L + R +R ++P+I ++ L + G DD + KP RE++ARV Sbjct: 60 LMLPGMDGLTICRELRKFCEIPIIMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARV 119 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKT 171 I RR + + + ++ P + + GE + L E R+L+++ N G ++ Sbjct: 120 KTILRRCQRAASPDKSRPQLIIDENAFQVRYGEQLLELTPAEFRLLKFMSDNAGTVFSRD 179 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q+ +Y V + ++SH+ LR+KL Sbjct: 180 QLLDILYD-DHRIVTDRTIDSHVKNLRRKL 208 >gi|170759641|ref|YP_001785959.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169406630|gb|ACA55041.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 230 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 91/208 (43%), Gaps = 16/208 (7%) Query: 27 EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+N + EE L+ RE+V+ + ++ LE+ + R +P++ +S Sbjct: 25 EGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEVCKRARQKYSIPILMLSAKVE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNRAETGPIRVFSD 136 ++ +G DD V KP +H E+ R+ A+ RR +++S+N + + Sbjct: 85 DMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYFLNTKMQISDNIIRIESMVIDKK 144 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--LFDEAVEENVVESHI 194 + L RE IL L NRG + +IF ++ F N V H+ Sbjct: 145 QHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFEKVWKERYFQ---SNNTVMVHM 201 Query: 195 SKLRKKLRNKL-GFDPVDSKRFLGYSID 221 S+LR K+ + G + + +GY I+ Sbjct: 202 SRLRDKIEQHMEGSKVIHTVWGVGYKIE 229 >gi|251795759|ref|YP_003010490.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543385|gb|ACT00404.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 225 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 99/207 (47%), Gaps = 15/207 (7%) Query: 24 VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV---LELPRIIRAHSQVPLIGISD 80 ++ EG+ LE + L++ A + ++ ++ + L L R + +P+I ++ Sbjct: 21 LTREGYRVLEAQNGLEAIAVLEKQPVDLAILDVMLPIVDGLTLCEFTRKNYDIPIILLTA 80 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR---VFSDG 137 L + SG DD V KP EIL RV A++RR + A + IR + D Sbjct: 81 RDQLSDKEQGYLSGTDDYVTKPFELPEILYRVKALFRRYSL----ASSDKIRLNQLIIDR 136 Query: 138 RDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 ++ E+ EV LP +E +L L G+ ++ ++ I+G D +E ++ HI Sbjct: 137 KNYEIVDGEEVQMLPLKEFELLAQLAEYPGRVFSRDELIRIIWGT-DYNGDERTIDVHIK 195 Query: 196 KLRKKL-RNKLGFDPVDSKRFLGYSID 221 +LRK+ + GF + + R +GY ++ Sbjct: 196 RLRKRFPETERGF-VIHTIRGIGYKLE 221 >gi|163856324|ref|YP_001630622.1| transcriptional regulatory protein [Bordetella petrii DSM 12804] gi|163260052|emb|CAP42353.1| Transcriptional regulatory protein [Bordetella petrii] Length = 225 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 11/155 (7%) Query: 57 GEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 GE L + R +RA + P++ ++ L + D+G DD + KP E+LAR+ A+ Sbjct: 57 GESGLSVLRALRARYDATPVLLVTARDQLSERIGGLDAGADDYIVKPFQLDELLARLRAV 116 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAK 170 RR S NR T + DP + G L + E L LM G+ + + Sbjct: 117 LRR---SRNRV-TPLLACAGVTLDPATRQVRRDGVEVTLSQHEYLTLLALMERPGRSLTR 172 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL 205 Q+ A+YG +E N + ++ +LR+KL + + Sbjct: 173 EQLEDAVYG-GHGTIESNTIAVYVHQLRRKLGDHI 206 >gi|49184828|ref|YP_028080.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165870203|ref|ZP_02214859.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167638281|ref|ZP_02396558.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170705986|ref|ZP_02896448.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650778|ref|ZP_02933675.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566316|ref|ZP_03019234.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|229604715|ref|YP_002866357.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684552|ref|ZP_05148412.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254721309|ref|ZP_05183099.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254734855|ref|ZP_05192567.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741256|ref|ZP_05198944.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254755510|ref|ZP_05207544.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760046|ref|ZP_05212070.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|49178755|gb|AAT54131.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164714091|gb|EDR19612.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167513582|gb|EDR88951.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170128988|gb|EDS97853.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172083239|gb|EDT68300.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190562451|gb|EDV16418.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|229269123|gb|ACQ50760.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 254 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ ++ + F G DD + KP E++ RV A+ +R +++ +++ Sbjct: 97 LRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 156 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + + + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 157 IQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 215 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + + + + R LGY ++ Sbjct: 216 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 251 >gi|115360529|ref|YP_777666.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285857|gb|ABI91332.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 239 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 24/210 (11%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-V 73 Y + DG EG LE W A+ L+ G LE+ R RA ++ Sbjct: 29 YEVVHSADGT--EGLRLLEQGNW---------DALILDLMLPGVDGLEICRRARAMARYT 77 Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPI 131 P+I S S + + G DD + KP E++ARV A+ RR+ ++R + G + Sbjct: 78 PIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDALARDSRIDAGTL 137 Query: 132 RVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 V DP V G L RE +L + + GK ++ + +A++G E Sbjct: 138 DVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLLNAVWGYQHEGY- 196 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 E+ V +HI++LR K+ DP + R L Sbjct: 197 EHTVNTHINRLRAKVEA----DPAEPVRIL 222 >gi|219667787|ref|YP_002458222.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538047|gb|ACL19786.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 225 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/223 (23%), Positives = 106/223 (47%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ L +DG + E + E E + S A ++ I+ L+ Sbjct: 5 MIVDDDPTIRELVCTLLKNDGFATCEARDGREALEKI-SEANPSLAVID--LMMPNMDGY 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R +R + +P++ ++ + F++G DD + KP E+L RV A+ RR + Sbjct: 62 ELCRQLRQGYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALMRRYR 121 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ + G + + + + G +P +E +L L G+ + Q+ ++G Sbjct: 122 IEASQTIQIGYVTLDKNSYSVILNGVGEDIPMKEFELLFKLGGFPGRTFTRDQLLEGVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 +D E ++ HI +LR++ K GF + + R LGY ++ Sbjct: 182 -YDFDGNERTLDVHIGRLRERFPAEKSGF-KITTVRGLGYRLE 222 >gi|317056902|ref|YP_004105369.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315449171|gb|ADU22735.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 220 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 70/132 (53%), Gaps = 15/132 (11%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF------ 147 G DD V KP + +L R++A+ +R NR T +++F D V+G + Sbjct: 94 GADDYVTKPYNPTILLLRISAVLKRF----NR--TSTLQMFHDAEVSTVKGSISRNGREQ 147 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 L + E I + L +G+ V + + +A++ DE V +N + +IS+LR KL + LGF Sbjct: 148 VLTKNEMIIFQLLFDRQGEIVTRDDLMTALWD-NDEFVNDNALSVNISRLRGKLAD-LGF 205 Query: 208 -DPVDSKRFLGY 218 D +++++ GY Sbjct: 206 EDAIETRKKQGY 217 >gi|229124627|ref|ZP_04253812.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228658967|gb|EEL14622.1| DNA-binding response regulator [Bacillus cereus 95/8201] Length = 222 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 7/164 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++D S + + +G DD + KP E++ARV AI RR Sbjct: 59 EICRQIRLVKMTPIIIVTDNISSKDCVAGLQAGADDYIRKPFAKEELVARVQAILRRSD- 117 Query: 122 SNNRAETGPIR---VFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + +T + +F D V+ G+ L +RE +L +L+ N+ +++ + + Sbjct: 118 CNQQHDTTFFQFKDLFVDASSNIVKKGGKNLSLTKREYDLLVFLIKNKNTILSREMLLNQ 177 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + V NVV+ +I +RKKL+ + + + GYS+ Sbjct: 178 VWG-HNVVVNPNVVDLYIGYIRKKLKCEKKNRYIQTIHGRGYSM 220 >gi|226324237|ref|ZP_03799755.1| hypothetical protein COPCOM_02016 [Coprococcus comes ATCC 27758] gi|225206685|gb|EEG89039.1| hypothetical protein COPCOM_02016 [Coprococcus comes ATCC 27758] Length = 233 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 12/154 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R S++P+I +S + + D G DD V KP + E+LAR+ R+ Sbjct: 64 IEIIKNVREISKIPIIVVSARQEEEEKIQALDLGADDYVTKPFYMGELLARIRVALRK-- 121 Query: 121 VSNNRAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 SN E ++F + + G+ L E +IL+ L+ NRGK + Sbjct: 122 -SNQIPEEKKEKIFQCDYLKVDWEKHQVSIDGKEVHLTPMEYKILKLLIDNRGKVLTHNY 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 I I+G + VE + ++ LR+K+ G Sbjct: 181 ILGQIWG-SAQGVEAANLRVFMAALRRKIEKDPG 213 >gi|254427529|ref|ZP_05041236.1| response regulator receiver domain protein [Alcanivorax sp. DG881] gi|196193698|gb|EDX88657.1| response regulator receiver domain protein [Alcanivorax sp. DG881] Length = 240 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 82/169 (48%), Gaps = 11/169 (6%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L + R +R+ + P++ ++ + + G DD V KP+ R +LAR+ Sbjct: 60 LMLPGADGLTVCREVRSAYKNPILMLTARTDDMDQVLGLEMGADDYVAKPVKPRVLLARI 119 Query: 113 AAIYRRLKV------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 A+ RR++ S R E G + + + R+ + GE L E +L L +N G Sbjct: 120 RALLRRVETDSERDNSPARLEFGALVIDNSAREVTLAGESVDLTSAEYDLLWLLASNAGT 179 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRF 215 +++ IF + G+ + ++ ++ IS++R K+G DP + KR Sbjct: 180 VLSRETIFEKLRGIQYDG-QDRSIDVRISRIRP----KVGDDPENPKRI 223 >gi|156742456|ref|YP_001432585.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156233784|gb|ABU58567.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 224 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/208 (23%), Positives = 98/208 (47%), Gaps = 6/208 (2%) Query: 16 IALFGDDGVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ 72 IA + G++ EG+N + + + L+ + + L+ G LE+ R +RA S Sbjct: 13 IAGYLRRGLTFEGYNVEIAADGRQALEIARERPPDLVVLDLMLPGIDGLEVARRLRAASD 72 Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA--ETGP 130 VP+I ++ ++ + ++G DD + KP E+LAR+ RR + + GP Sbjct: 73 VPIIMLTARDAVPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRRRQREDTATVLRYGP 132 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + + + L +E +LE M + + + + I+ ++G ++ E N++ Sbjct: 133 LTMDLTAHEVTIGDRRVDLTAKEYDLLELFMRHPQQVMTRDVIYDRVWG-YNFGGESNII 191 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E ++ LR+KL + + + R +GY Sbjct: 192 EVYVRYLRQKLEARGEPRLIHTVRGVGY 219 >gi|77414843|ref|ZP_00790958.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|77159106|gb|EAO70302.1| DNA-binding response regulator [Streptococcus agalactiae 515] Length = 217 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 6/116 (5%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEVQGE-VFP 148 D+G DD + KP +E+LAR+ ++ RRL+ + N G RV + E+Q E Sbjct: 91 LDAGADDYLTKPFSLKELLARLRSMSRRLEDFTPNVLSLG--RVTLSVGEQELQCENTIR 148 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGL--FDEAVEENVVESHISKLRKKLR 202 L +E ++L + M N K ++ Q+F ++G E V+E V ++S LR+KL+ Sbjct: 149 LAGKEAKMLAFFMXNHDKELSTQQLFEHVWGADKDQEDVDEGYVFIYVSYLRQKLQ 204 >gi|163845708|ref|YP_001633752.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222523414|ref|YP_002567884.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163666997|gb|ABY33363.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222447293|gb|ACM51559.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 228 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ A G + + E LQ + E I L+ G + Sbjct: 5 ILVVDDEASIRNVAKAYLEHAGYRV--LCATTGPEGLQMALEEQPDLIVLDLMLPGMDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +R S V ++ ++ + G DD + KP RE++ARV AI RR + Sbjct: 63 EITARLRERSDVYILMLTARSDEMDRVAGLRVGADDYLTKPFSPRELVARVEAILRRQR- 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N A++ +R DPE + G++ L E +L L N + +++ + Sbjct: 122 -NKTAKSSLMRFTHVEIDPEAREARANGQLLELTPTEFDLLLALARNHNRVLSREDLIEK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G D + VV+ ++S+LR+K+ G + + + R +GY Sbjct: 181 VWG-ADFFGTDRVVDVYVSQLRRKIEAITGENVIRTARGVGY 221 >gi|229827614|ref|ZP_04453683.1| hypothetical protein GCWU000182_03003 [Abiotrophia defectiva ATCC 49176] gi|229788252|gb|EEP24366.1| hypothetical protein GCWU000182_03003 [Abiotrophia defectiva ATCC 49176] Length = 224 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 75/150 (50%), Gaps = 2/150 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR-RLKVSNNRAETGPI 131 +P++ ++ + ++ D G +D + KP +E+LAR+ A+ R ++ ++ E G + Sbjct: 73 IPVLLLTAKSEVDDKVEGLDLGANDYLTKPFEPKELLARIRAMTRSKMAEGDSVLEYGNV 132 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + F L +E +++E LM+ ++ + I+G FD + +VV Sbjct: 133 SLNRASFVLSTKTGEFKLSNKEFQMMELLMSYPKNLISAEKFMEKIWG-FDTEADISVVW 191 Query: 192 SHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +IS LRKKL + + R LGYS++ Sbjct: 192 VYISYLRKKLASLKADIEIKVTRNLGYSLN 221 >gi|229187114|ref|ZP_04314262.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] gi|228596355|gb|EEK54027.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] Length = 248 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 79/159 (49%), Gaps = 18/159 (11%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 80 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 139 Query: 120 ----KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ- 172 KV+ +++ E G + + + R +V GE L +E IL YL+A+ K+V + Sbjct: 140 LNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDIL-YLLASHPKKVYNVEN 198 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL-----RNKL 205 IF ++ D+ E N V HI LRKKL +NKL Sbjct: 199 IFQQVWA--DDYFEGGNTVMVHIRTLRKKLGEDKRKNKL 235 >gi|226356970|ref|YP_002786710.1| response regulator OmpR [Deinococcus deserti VCD115] gi|226318960|gb|ACO46956.1| putative response regulator, OmpR [Deinococcus deserti VCD115] Length = 228 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 79/155 (50%), Gaps = 5/155 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R +S VP+I ++ ++ + G DD + KP H E+LARV R+ +++ + + Sbjct: 76 LRKNSAVPIIVLTARDTVDEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQ-RITESLS 134 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GLFDEAV 185 G + + R + E L +E IL L+ G+ ++ +I I+ G E Sbjct: 135 -MGDLTLDPQKRLVTYKAEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGRLPEG- 192 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVV+ H++ LR KLR+ G+ + + R +GY++ Sbjct: 193 -SNVVDVHMANLRAKLRDLDGYGLLRTVRGVGYAL 226 >gi|166368005|ref|YP_001660278.1| OmpR family two-component response regulator [Microcystis aeruginosa NIES-843] gi|166090378|dbj|BAG05086.1| two-component response regulator OmpR subfamily [Microcystis aeruginosa NIES-843] Length = 250 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 16/201 (7%) Query: 9 ALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRII 67 AL ++GY AL DG V+LE S +E +R D+ ++ L L++ R++ Sbjct: 37 ALEEEGYEALGVSDGRVALELLQS---QESNHGESRFDLVVLDLML--PQINGLDICRLL 91 Query: 68 RAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 R H + P++ +S S + + G DD + KP RE++AR A+ RR ++ A Sbjct: 92 RYHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCRALIRRQGFTSLAA 151 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 P+R F D V+ E L +E R+L+ M+ + ++ Q+ I+G Sbjct: 152 --APVRKFRDVLLYPQECRVTVRDEEINLSPKEFRLLDLFMSYPRRVWSREQLIEQIWGP 209 Query: 181 FDEAVEENVVESHISKLRKKL 201 D + V+ HI LR+KL Sbjct: 210 -DFLGDTKTVDVHIRWLREKL 229 >gi|126172546|ref|YP_001048695.1| two component transcriptional regulator [Shewanella baltica OS155] gi|152998839|ref|YP_001364520.1| two component transcriptional regulator [Shewanella baltica OS185] gi|217971506|ref|YP_002356257.1| winged helix family two component transcriptional regulator [Shewanella baltica OS223] gi|304411761|ref|ZP_07393373.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307306187|ref|ZP_07585932.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|125995751|gb|ABN59826.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS155] gi|151363457|gb|ABS06457.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|217496641|gb|ACK44834.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] gi|304349949|gb|EFM14355.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306911060|gb|EFN41487.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] Length = 225 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 108/224 (48%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D A D + F + G ++E + L +S++ D+ ++ L G K+ Sbjct: 3 ILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLSLATSSQYDLVILDRMLPQLDGLKL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 L R +Q P++ +S + + +G DD + KP E+L R + R Sbjct: 63 LAALRA--TGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMHRGQ 120 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + V+ + G +++ R+ + G+ L +E ++L+YLM + + +++T +F A+ Sbjct: 121 SVPVTTDLV-VGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFEAV 179 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + FD NV++ HI+KLR+K + +++ R GY + Sbjct: 180 WDYHFDP--RTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221 >gi|113869661|ref|YP_728150.1| response regulator [Ralstonia eutropha H16] gi|113528437|emb|CAJ94782.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 224 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 6/179 (3%) Query: 28 GFNSLEFEEWLQSSAREDVSAIEAFLIG---KGEKVLELPRIIRAHS-QVPLIGISDYPS 83 GF + LQ+ AR +A L+ G+ L + + +RA + P++ ++ + Sbjct: 24 GFVIEHVADGLQAEARLQAEEYDAVLLDLRLPGKDGLAVLKSMRARDDRTPVLILTAQDT 83 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETGPIRVFSDGRDPEV 142 L + + G DD + KP E+ AR+ A+ RR + ++ R + G + + R + Sbjct: 84 LDERVRGLNLGADDYLPKPFAIAELEARLLALIRRSRGRAHPRLQCGTLVFDGETRSFTL 143 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 G L RE +L L+A G+ + K Q+ ++ L D V + +E + +LRKKL Sbjct: 144 DGAPLALTPRESTLLGALLARSGQPLTKAQLLDKVFSL-DADVSPDAIEVLVYRLRKKL 201 >gi|30020095|ref|NP_831726.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|218235313|ref|YP_002366679.1| DNA-binding response regulator [Bacillus cereus B4264] gi|29895645|gb|AAP08927.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|218163270|gb|ACK63262.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 225 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/156 (22%), Positives = 78/156 (50%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ ++ + F G DD + KP E++ RV A+ +R +++ +++ Sbjct: 68 LRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 127 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + + LP +E +L L A G+ ++ Q+ I+G +D Sbjct: 128 IQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGAKSGRTCSREQLIEEIWG-YDFEG 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + + + + R LGY ++ Sbjct: 187 NERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLE 222 >gi|332702286|ref|ZP_08422374.1| two component transcriptional regulator, winged helix family [Desulfovibrio africanus str. Walvis Bay] gi|332552435|gb|EGJ49479.1| two component transcriptional regulator, winged helix family [Desulfovibrio africanus str. Walvis Bay] Length = 225 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 22/195 (11%) Query: 37 WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGV 95 ++ ++ D ++ L G L + + +R+ P++ +S + + +G Sbjct: 38 YMAAAGSYDAMVVDRML--PGVDGLTIVKTLRSTGNATPVLFLSAMGEVDDRVRGLKAGG 95 Query: 96 DDVVNKPIHHREILARVAAIYRR---------LKVSNNRAETGPIRVFSDGRDPEVQGEV 146 DD + KP E+LAR+ A+ RR LKV++ + V GR E+Q + Sbjct: 96 DDYLTKPYAFAELLARLEALDRRAGAVTGGTMLKVADLEMDLVGRSVRRAGRSIELQPKE 155 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-FDEAVEENVVESHISKLRKKLRNKL 205 F L LEYLM + G+ V +T + ++ FD + NV++ HIS+LR+K+ Sbjct: 156 FAL-------LEYLMRHAGQVVTRTMLLENVWDYSFDP--QTNVIDVHISRLRQKIDKDF 206 Query: 206 GFDPVDSKRFLGYSI 220 + + R GYS+ Sbjct: 207 DRPLLHTVRGSGYSL 221 >gi|295837871|ref|ZP_06824804.1| DNA-binding response regulator TrcR [Streptomyces sp. SPB74] gi|295826712|gb|EFG64995.1| DNA-binding response regulator TrcR [Streptomyces sp. SPB74] Length = 274 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 9/168 (5%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G VL+L R RA P++ +++ + + +G D+ V+KP E++AR+ + Sbjct: 96 GLSVLQLMR--RAQPDTPVLFLTEKDAAADRVAGLTAGGDEYVSKPFSLEEVVARLRGLI 153 Query: 117 RRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR + S + G + + D + G L E +L YLM N + ++K QI Sbjct: 154 RRAGAGRRSTSVLTVGDLVLDEDSHEVSRGGTDIHLTATEFELLRYLMRNPRRVLSKAQI 213 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 ++ +D + NVVE +IS LR+K+ G +P + ++R GY I Sbjct: 214 LDRVWS-YDFGGQANVVELYISYLRRKIDR--GREPMIHTRRGAGYLI 258 >gi|228961335|ref|ZP_04122951.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798343|gb|EEM45340.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 223 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 7/161 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S+VP+I +S + + + G DD + KP + ++A++ A+ RR S Sbjct: 64 RKIREVSKVPIIFLSSRDNPMDMVMAMNMGGDDFMQKPFYTDVLVAKIQALMRR-TYSYT 122 Query: 125 RAETGPIR---VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ET + V + + EV ++ L + E +IL+ LM N G V++ I ++ Sbjct: 123 QTETNVVEYEGVVLNLQSGEVTYHNQILELTKNEFKILQILMQNIGSIVSRDNIMRKLWE 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + V++N + +++++RKKL + + +K+ GY I Sbjct: 183 -NESFVDDNTLTVNVARVRKKLAELGKEEFIHTKKGQGYII 222 >gi|161521632|ref|YP_001585059.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189352202|ref|YP_001947829.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|221210801|ref|ZP_03583781.1| DNA-binding response regulator [Burkholderia multivorans CGD1] gi|160345682|gb|ABX18767.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189336224|dbj|BAG45293.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|221169757|gb|EEE02224.1| DNA-binding response regulator [Burkholderia multivorans CGD1] Length = 221 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 81/154 (52%), Gaps = 6/154 (3%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A S P++ ++ ++ + G DD + KP +RE+ ARV A+ RR + T Sbjct: 69 AGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRRNSGHASDVLT 128 Query: 129 -GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQIFSAIYGLFDEAVE 186 G + + R E+ G+ L R+E +LE ++A+R +R+ +K ++ + ++ +E Sbjct: 129 LGGLVIDRSSRLAELDGKPLSLSRQEFALLE-ILASRPQRIFSKDELLNQLFSFGNEP-S 186 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N VE +++++RKKL+ + + R +GY I Sbjct: 187 ANAVEQYVTRVRKKLQGS--SVEIRTARGMGYQI 218 >gi|110597758|ref|ZP_01386042.1| Response regulator receiver:Transcriptional regulatory protein-like [Chlorobium ferrooxidans DSM 13031] gi|110340665|gb|EAT59145.1| Response regulator receiver:Transcriptional regulatory protein-like [Chlorobium ferrooxidans DSM 13031] Length = 222 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 88/168 (52%), Gaps = 16/168 (9%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R +R S VP++ ++ +L+ + D+G +D + KP E+LAR+ R Sbjct: 60 IEVCRQVRKGGSTVPILFLTAKDTLEDVVFGLDAGANDYIKKPFEFEELLARIRVQLR-- 117 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQI 173 + NR E + V S +P V +VF L +E +LEYL+ N+ + +++I Sbjct: 118 --TTNRVEES-LSVGSLSINP-VTHQVFSGSTELTLTPKEFALLEYLIRNKDRVCTRSRI 173 Query: 174 FSAIYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + FD + +V++ +I+ LR+KL + + + + R +GY + Sbjct: 174 IEHVWDIHFDS--DTSVIDVYITFLRRKLESAGCGNIIQTIRGVGYIV 219 >gi|56540675|gb|AAV92791.1| PmrA [Salmonella bongori] gi|56540677|gb|AAV92792.1| PmrA [Salmonella bongori] Length = 222 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 13/223 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G ++ E S + ++ L + + + Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDE-DGLH 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R+ + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 62 FLARVRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRR--- 118 Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 NN+ E+ G + + + G+ L +E +L LM G V + +++ I Sbjct: 119 HNNQGESELTVGKLTLNMGRHQVWMDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDI 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Y +D N +E HI LR+K+G + + R GY + Sbjct: 179 YN-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYML 216 >gi|317969839|ref|ZP_07971229.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. CB0205] Length = 253 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 21/169 (12%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IRA S+VP+I ++ + + G DD + KP +E+ AR+ + RR+ Sbjct: 75 IRAQSEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRVSSVQANG 134 Query: 127 ETGPIRVFS-----------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 GP R + R E L E +LE L++ G+ +++ + Sbjct: 135 VAGPGRTSHVVVVGDLSIDFNKRQAHRGDERIRLTGMEFNLLELLLSRSGEPISRLDMLE 194 Query: 176 AIYGLFDE-AVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 ++G E + + VV+ HIS+LR KL + DP + + R LGY Sbjct: 195 KVWGYKPERSSDSRVVDVHISRLRAKLED----DPENPELILTARGLGY 239 >gi|304404458|ref|ZP_07386119.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304346265|gb|EFM12098.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 232 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 14/205 (6%) Query: 23 GVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDY 81 GV+ +G LE + S D+ ++ L G G +VL R+ + + VP+I ++ Sbjct: 30 GVAEDGRKGLE----MAQSGEWDLVLLDVMLPGLNGIEVLR--RLRQGGNTVPVILLTAR 83 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPE 141 ++ + F+ G D V KP E+LARV I R E + D Sbjct: 84 DTVPDKVSGFEHGASDYVTKPFAMEELLARVRNILRIFAQHTKEVEGADLIKVGDLTVEL 143 Query: 142 VQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHIS 195 +VF L RE +L YL ++ + ++ I S ++G +D E N+V+ +I Sbjct: 144 RTRKVFRKELAVDLTPREFELLVYLAEHKNEEKSREDILSEVWG-YDFIGETNLVDVYIR 202 Query: 196 KLRKKLRNKLGFDPVDSKRFLGYSI 220 LR+KL + + + R +GY + Sbjct: 203 YLRQKLDKGFRYKLIHTVRGVGYML 227 >gi|319764024|ref|YP_004127961.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|317118585|gb|ADV01074.1| response regulator receiver [Alicycliphilus denitrificans BC] Length = 243 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 6/140 (4%) Query: 67 IRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 +R H S++P++ +++ + + G DD + KP+ E++AR+ A+ RR S+ Sbjct: 66 VRRHLGSELPILFVTNRQEERDIVQGLACGADDFMVKPVRVGELMARIQALLRRAYPSST 125 Query: 125 RA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R E G R R E+ G L RE + +L N G+ +++ + I+G Sbjct: 126 REGVLEFGRYRFLPATRSLEMDGVPVELKAREYELALFLFQNIGRLLSRDHLREIIWGHS 185 Query: 182 DEAVEENVVESHISKLRKKL 201 E + + +++HIS+LR L Sbjct: 186 AEVISRS-LDTHISRLRSLL 204 >gi|268611080|ref|ZP_06144807.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 224 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 8/157 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 I+ +P+I +S + L F+ GVDD V KP E++AR+ I + + ++ Sbjct: 67 IKEFKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPMELMARIKVILSHSRNAEQKS 126 Query: 127 ETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++G I + + G V GE L +E +L L+ N+G +++ +I + ++G + Sbjct: 127 DSGKLTVSGIEIDTLGLTVTVNGEKADLTAKEYALLLLLVKNKGIVLSRDRILNEVWG-Y 185 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D + V+ I LR KL + D + + R +GY Sbjct: 186 DSFGVDRTVDWQIKLLRSKLGDYR--DSIKTVRGVGY 220 >gi|260169549|ref|ZP_05756360.1| Transcriptional regulatory protein [Brucella sp. F5/99] gi|261759076|ref|ZP_06002785.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|261739060|gb|EEY27056.1| transcriptional regulatory protein [Brucella sp. F5/99] Length = 228 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 20/171 (11%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + G DD V KP E+LARV A+ R Sbjct: 64 IELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 123 Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R LKV + + RV+ ++ EV L E R+LEY M + G+ Sbjct: 124 RANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSPGRVF 176 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +++Q+ ++G D V++ V+ H+ +LRK + D + + R GYS Sbjct: 177 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKVINVGRAADSIRTVRGAGYS 226 >gi|238922143|ref|YP_002935657.1| two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR [Eubacterium eligens ATCC 27750] gi|238873815|gb|ACR73523.1| two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR [Eubacterium eligens ATCC 27750] Length = 223 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 80/169 (47%), Gaps = 11/169 (6%) Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + L + + S +P++ ++ + ++ D+G +D + KP RE+LAR+ + R Sbjct: 60 ITALKNLRKCGSNIPVLMLTAKTEIDDKVEGLDNGANDYLTKPFDTRELLARIRVLTRSE 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA--- 176 K +N G I + + + F L +E +++ M N KTQ+ SA Sbjct: 120 KQQDNVITLGNISLNTTTCELSSPSGSFLLTNKEYQMMLMFMNN------KTQVISAEHF 173 Query: 177 IYGLFDEAVEENV--VESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + ++D + ++ V ++IS LR+KL + ++R +GY + N Sbjct: 174 MEKIWDSESDSDISTVWTYISYLRRKLEALKSDYSIATRRNMGYYLKNN 222 >gi|228945599|ref|ZP_04107949.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814117|gb|EEM60388.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 234 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ ++ + F G DD + KP E++ RV A+ +R +++ +++ Sbjct: 77 LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 136 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + + + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 137 IQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFEG 195 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + + + + R LGY ++ Sbjct: 196 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 231 >gi|229095303|ref|ZP_04226295.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|228688162|gb|EEL42048.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 242 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 10/165 (6%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S +P+I ++ + G DD V KP H E+ AR+ A+ RR Sbjct: 79 ETCKKIRSFSNIPIIMVTARDQTVAVVQGLKIGADDYVTKPFHEEELFARIEAVLRR--- 135 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N + + D V E L E +L + + + + Q+ I+G Sbjct: 136 TNEHKQIQYHGIVWDETKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWG 195 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDS--KRFLGYSIDW 222 L + E+ V+SHI LR KLR K F P+D K G W Sbjct: 196 L-NTNTEDRTVDSHIRNLRDKLR-KANF-PIDHHLKTVYGVGYRW 237 >gi|229014012|ref|ZP_04171136.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229135662|ref|ZP_04264439.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228647760|gb|EEL03818.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228747268|gb|EEL97147.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 229 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 64/150 (42%), Gaps = 8/150 (5%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IR S VP+I ++ TL F+ G DD V KP +LAR + + S Sbjct: 66 RRIRKTSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRQASKK 125 Query: 125 RAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E I V R V L E IL Y M N+G + + Q+ S I Sbjct: 126 PLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLISRI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF 207 +G ++ A ++ V SHI LR KL K + Sbjct: 186 WG-YEFAGDDRTVNSHIRNLRNKLGEKAKY 214 >gi|226364243|ref|YP_002782025.1| two-component response regulator PhoP [Rhodococcus opacus B4] gi|226242732|dbj|BAH53080.1| two-component response regulator PhoP [Rhodococcus opacus B4] Length = 240 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 9/151 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVS----NNRAET 128 P++ ++ +++ + G DD V KP E++ R+ I RR KVS + R + Sbjct: 86 PVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGKVSVEEQSARIKF 145 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 I + D R+ G++ L E +L Y M N G ++K +I ++ +D E Sbjct: 146 ADIELDDDTREVWKAGDLVSLSPTEFTLLRYFMVNAGTVLSKPRILDHVWN-YDFGGEVG 204 Query: 189 VVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VVES++S LR+K+ G P + + R +GY Sbjct: 205 VVESYVSYLRRKVDT--GETPLIHTLRGVGY 233 >gi|210634507|ref|ZP_03298134.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279] gi|210158808|gb|EEA89779.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279] Length = 237 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 74/179 (41%), Gaps = 23/179 (12%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R IR P+I ++ S ++ G DD + KP E++AR A RR Sbjct: 63 FELLRTIRTERTYPVIMLTARDSQADKIEGLSLGADDYMVKPFRPLELVARCKAQLRRYT 122 Query: 121 VSNNRAET------GPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R ++ GPI F+ D R V + E IL YL +RG V Sbjct: 123 SYGTREQSVAAEDAGPIIAFNGLSINKDARTVTVDEKPVRCTPLEYSILLYLAEHRGCVV 182 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL------GYSID 221 ++F A++ A N V HI LR+KL D + RF+ GY+I+ Sbjct: 183 PVEELFRAVWDEEFMAGSNNTVMVHIRHLREKLG-----DDAQNPRFIKNIWGVGYTIE 236 >gi|189183277|ref|YP_001937062.1| transcriptional activator protein CzcR [Orientia tsutsugamushi str. Ikeda] gi|189180048|dbj|BAG39828.1| transcriptional activator protein CzcR [Orientia tsutsugamushi str. Ikeda] Length = 245 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 24/203 (11%) Query: 9 ALVKDGYIA---LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65 +L +G IA G DG+ + ++ + D+S E L + +K+ Sbjct: 19 SLANEGIIADKAHLGKDGIEISKL--YDYSLIILDLMLPDISGYEVLLSLRSQKI----- 71 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNN 124 Q P++ +S ++ + G DD + KP E+ ARV AI RR K S Sbjct: 72 ------QTPVLILSGLSTIDNKIKGLSFGADDYITKPFDSDELSARVKAIIRRSKGHSEA 125 Query: 125 RAETGPIRVFSDGRDPEV----QGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G + + D R + + + P L +E +ILE L +G + K S +Y Sbjct: 126 VIRVGHLSINLDTRSVSMYNKDKQKNMPIHLTNKEYKILELLAIKKGTVLTKEMFLSHLY 185 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 DE E +++ I KLR+KL Sbjct: 186 SGIDEP-EIKIIDVFICKLRRKL 207 >gi|167737322|ref|ZP_02410096.1| two component transcriptional regulator, winged helix family protein [Burkholderia pseudomallei 14] Length = 239 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 25/173 (14%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA +S +P++ ++ S+ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 118 Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A GP V GR V L RE +LE L+ G+ V+K Q Sbjct: 119 -----GAGGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQ 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221 + + + E V N +E ++ +LRKK+ +P + + R LGY ++ Sbjct: 174 LVDHLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRITTVRGLGYCLE 219 >gi|163838816|ref|YP_001623221.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952292|gb|ABY21807.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 247 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 7/163 (4%) Query: 43 REDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK 101 R DV ++ L G G ++L R+ + +P + ++ ++Q + +G DD V K Sbjct: 65 RPDVLVLDIMLPGFDGVELLGKIRLFAPN--IPALFLTAKDAVQDRVAGLTAGGDDYVTK 122 Query: 102 PIHHREILARVAAIYRRLKV-SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 P E+L R+ I +R V + + AE G + + D R + L E +L Sbjct: 123 PFSMEEVLLRLHRIVQRAGVIAEDSAEVRVGDLVLNHDTRQVTRGADDVTLTATEFELLR 182 Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 YLM N + ++KTQI ++ +D + N+VE +IS LRKK+ Sbjct: 183 YLMENPKRVISKTQILDRVWN-YDFGGQVNIVELYISYLRKKI 224 >gi|119896456|ref|YP_931669.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp. BH72] gi|119668869|emb|CAL92782.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp. BH72] Length = 236 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 7/151 (4%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETG 129 ++P+I ++ Q + ++G DD + KP RE++AR+ A+ RR + + + E G Sbjct: 76 EIPIIMLTARGEEQDKVAGLETGADDYITKPFSPRELVARIKAVLRRRAPQATEDAVELG 135 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--LFDEAVEE 187 +R+ L E R+L +LM + + ++ Q+ ++G +F VEE Sbjct: 136 GLRLDPATHRVTAGERALSLGPTEFRLLHFLMTHAERVHSRAQLLDQVWGDHVF---VEE 192 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V+ HI +LR L + + R GY Sbjct: 193 RTVDVHIRRLRCALEPSAHDALIQTVRGSGY 223 >gi|73541850|ref|YP_296370.1| phosphate regulon transcriptional regulatory protein phoB [Ralstonia eutropha JMP134] gi|72119263|gb|AAZ61526.1| Phosphate regulon transcriptional regulatory protein phoB [Ralstonia eutropha JMP134] Length = 235 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 79/160 (49%), Gaps = 17/160 (10%) Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---------LKVS 122 Q+P+I ++ Q + ++G DD V KP +E+LAR+ A+ RR + ++ Sbjct: 76 QIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRRRAPQLTDDVVAIN 135 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--L 180 R + RV + ++ ++ P E R+L +LM + + +++Q+ ++G + Sbjct: 136 GLRLDPATHRVTGEDNAGPIKLDLGP---TEFRLLHFLMTHPERVHSRSQLLDQVWGDHV 192 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F VEE V+ HI +LR L + +++ R GY + Sbjct: 193 F---VEERTVDVHIKRLRAALTPGGYSNMIETVRGSGYRL 229 >gi|119357020|ref|YP_911664.1| two component transcriptional regulator [Chlorobium phaeobacteroides DSM 266] gi|119354369|gb|ABL65240.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides DSM 266] Length = 222 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 4/162 (2%) Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ R +R A S VP+I ++ +L+ + D+G +D + KP E+LAR+ RR Sbjct: 60 IEVCRQVRKAGSSVPIIFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRRN 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ G + V + L +E +LE+L N+ K +++I + Sbjct: 120 NPESDAITAGFVTVNPVTHQVFCRDTEIALTPKEFSLLEFLARNKDKVCTRSRIIEHVRD 179 Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + FD + ++++ +I+ LRKKL + + + R +GY I Sbjct: 180 MHFDS--DTSIIDVYINFLRKKLDCSGCGNIIQTIRGVGYII 219 >gi|332994543|gb|AEF04598.1| two component transcriptional regulator [Alteromonas sp. SN2] Length = 226 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 2/146 (1%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P+I ++ L+ L F G DD + KP E++ARV A+ R N+ G + Sbjct: 74 IPVIMLTARDQLEDKLTGFQKGADDYLIKPFAMAELVARVTALSGRRSAQVNQLVMGNVT 133 Query: 133 VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + +G++ + L +L+ LM +G V++ ++ A + D E NV++ Sbjct: 134 LKINGQEAQAGSNNIKLSPITYALLKKLMQAKGDVVSRERLIEAAWK--DSVPESNVLKV 191 Query: 193 HISKLRKKLRNKLGFDPVDSKRFLGY 218 H+ LRK L V SK G+ Sbjct: 192 HMHHLRKGLEQAKASISVLSKPNSGF 217 >gi|329939866|ref|ZP_08289167.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301436|gb|EGG45331.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 220 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 19/161 (11%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A +VP++ ++ + D+G DD + KP + ++ARV A+ RR RA Sbjct: 69 AGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRR------RARP 122 Query: 129 GPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 GP V G R +G L +E +LE+L+ G+ VAK +I ++ Sbjct: 123 GPSPVHVHGGLTVDTAARRVLREGVEVALTAKEFAVLEHLVLRPGEVVAKAEILDHVWD- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F + N+VE +IS LR+ KLG + + + R GY ++ Sbjct: 182 FAYDGDPNIVEVYISALRR----KLGAERIRTVRGAGYRLE 218 >gi|301028803|ref|ZP_07191985.1| transcriptional regulatory protein [Escherichia coli MS 196-1] gi|299878209|gb|EFI86420.1| transcriptional regulatory protein [Escherichia coli MS 196-1] Length = 145 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 8/119 (6%) Query: 92 DSGVDDVVNKPIHHREILARVAAIYRRLKV--SNNRAETGPIRVFSDGRDP-----EVQG 144 + G DD + KP +E++ARV A++RR + N R E G IR DP + G Sbjct: 1 EMGADDYLPKPFSVQELIARVKALFRRQEAMGQNIRLEGGLIRCHGLHIDPLAREVRLCG 60 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 E+ L RE +L + + G+ ++ + ++G E E+ V +HI++LR K+ + Sbjct: 61 ELIDLTPREFDLLYWFARHPGEVFSRLSLLDNVWGYQHEGY-EHTVNTHINRLRTKIEH 118 >gi|257439442|ref|ZP_05615197.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] gi|257198101|gb|EEU96385.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] Length = 247 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 17/146 (11%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +P++ + + + +G DD + KP E++AR+A++ RR N +A Sbjct: 84 IRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNQQA 143 Query: 127 ETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G I+ + + R F LP +E +L Y ++GK + K QI+ ++ Sbjct: 144 --GAIQKLNFYGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVW 201 Query: 179 G---LFDEAVEENVVESHISKLRKKL 201 G +D++ N++ + IS+LRKKL Sbjct: 202 GEEYFYDDS---NIM-AIISRLRKKL 223 >gi|229050930|ref|ZP_04194480.1| DNA-binding response regulator [Bacillus cereus AH676] gi|228722388|gb|EEL73783.1| DNA-binding response regulator [Bacillus cereus AH676] Length = 224 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R + +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 61 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 121 KTEAAVSHEVIEAGEIVICPKKRKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 ++G F+ V+ + +LRKKL Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKL 205 >gi|225374967|ref|ZP_03752188.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM 16841] gi|225213219|gb|EEG95573.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 17/146 (11%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +P++ + + + +G DD + KP E++AR+A++ RR N +A Sbjct: 67 IRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRFNQQA 126 Query: 127 ETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G I+ + + R F LP +E +L Y ++GK + K QI+ ++ Sbjct: 127 --GAIQKLNFNGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYEEVW 184 Query: 179 G---LFDEAVEENVVESHISKLRKKL 201 G +D++ N++ + IS+LRKKL Sbjct: 185 GEEYFYDDS---NIM-AIISRLRKKL 206 >gi|212635951|ref|YP_002312476.1| transcriptional regulatory protein [Shewanella piezotolerans WP3] gi|212557435|gb|ACJ29889.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 227 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 77/140 (55%), Gaps = 11/140 (7%) Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET 128 A Q P++ +S S+ + G DD + KP E+L R+ + +R K SN+ +T Sbjct: 69 AGKQTPVLILSALDSVSERVKGLREGSDDYLIKPFALSELLVRIEILIQR-KGSNSDKQT 127 Query: 129 GPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181 ++V +D + + +VF L +E ++L YLM + G+ V+++ +F A++ F Sbjct: 128 NVLQV-ADLKMELLSRKVFRGKNEVILQPKEFKLLRYLMEHSGQVVSRSLLFEAVWDYQF 186 Query: 182 DEAVEENVVESHISKLRKKL 201 D + NV++ H+++LRKK+ Sbjct: 187 DP--QTNVIDVHMARLRKKV 204 >gi|169334592|ref|ZP_02861785.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM 17244] gi|169259309|gb|EDS73275.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM 17244] Length = 236 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 20/192 (10%) Query: 27 EGFNSLEFE---EWLQSSAREDVS-AIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82 +G+N E E E L+ RED+ AI ++ + + R+ R +P+I +S Sbjct: 25 QGYNVFEAENGKEGLEVLNREDIHLAIVDIMMPVMDGITMTMRL-RETYDIPVIFLSAKS 83 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR------LKVS-------NNRAETG 129 + + G DD V KP E++ARV + RR LK S +NR G Sbjct: 84 EDIDKITGLNIGADDYVTKPFASMELIARVNSQIRRYDQILNLKHSSIKEEENSNRYVVG 143 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + + D ++ V G L +E +IL L+ G+ + QI+ ++ ++A+ Sbjct: 144 GLELDDDTKEVTVDGNKVKLTAKEYQILRLLIKTPGRVYSSEQIYEQVWN--EKAINTET 201 Query: 190 VESHISKLRKKL 201 + HI KLR+K+ Sbjct: 202 IMVHIRKLREKI 213 >gi|170755180|ref|YP_001780249.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169120392|gb|ACA44228.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 230 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 91/208 (43%), Gaps = 16/208 (7%) Query: 27 EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+N + EE L+ RE+V+ + ++ LE+ + R +P++ +S Sbjct: 25 EGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEVCKRAREKYSIPILMLSAKVE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNRAETGPIRVFSD 136 ++ +G DD V KP +H E+ R+ A+ RR +++S+N + + Sbjct: 85 DMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYFLNTKMQISDNIIRIESMVIDKK 144 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--LFDEAVEENVVESHI 194 + L RE IL L NRG + +IF ++ F N V H+ Sbjct: 145 QHKVAINDNEIDLTAREFEILYLLANNRGMVFSAEEIFEKVWKERYFQ---SNNTVMVHM 201 Query: 195 SKLRKKLRNKL-GFDPVDSKRFLGYSID 221 S+LR K+ + G + + +GY I+ Sbjct: 202 SRLRDKIEQHMEGSKVIHTVWGVGYKIE 229 >gi|167842128|ref|ZP_02468812.1| Response regulator [Burkholderia thailandensis MSMB43] Length = 240 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 79/170 (46%), Gaps = 10/170 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + L R +R HS +I ++ + ++ DD + KP RE+LARV A+ RR + Sbjct: 65 ISLARELREHSTAGIIFVTQRDGDLDRVLGLETAGDDYITKPFRLRELLARVRALLRRQR 124 Query: 121 VSNNRAETGPIRVFS----DGRDPE---VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + A + F D R E V G V PL RE +L L+ RG + + + Sbjct: 125 LYHEVAPVDTVLTFDRWLIDLRRRELALVGGAVLPLTPREFDLLAALVMVRGTTLTREYL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221 + + A + V++ I++LR+K+ G P+ + +GY +D Sbjct: 185 LEVVSK-RERAADARTVDTLIARLRRKMSGDAGGLRCPIGTVVGVGYRLD 233 >gi|160937676|ref|ZP_02085036.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC BAA-613] gi|158439321|gb|EDP17073.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC BAA-613] Length = 236 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 75/153 (49%), Gaps = 12/153 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +RA SQVP+I +S + + + G DD + KP +E++ARV A+ RR + Sbjct: 65 QVCRELRASSQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 122 SNNRAETGPIRVFSDGRDPEV-----------QGEVFPLPRRERRILEYLMANRGKRVAK 170 + A + + P++ G +P +E +L +L A+ + + Sbjct: 125 APAPAPSSTEQQGEYVEYPDLIVNLTNYSVIYMGHSVEMPPKELELLYFLAASPNQVFTR 184 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 Q+ I+G ++ + V+ HI +LR+K+++ Sbjct: 185 EQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKD 216 >gi|126642329|ref|YP_001085313.1| putative two-component response regulator [Acinetobacter baumannii ATCC 17978] Length = 146 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 6/145 (4%) Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRV 133 +I I+ S+ ++ D G +D + KP E+ AR+ A R+ +S T G +++ Sbjct: 1 MIFITARDSIHDRVEGLDLGANDYLVKPFSLEELSARIRAQLRKQTLSQQSILTWGDLQL 60 Query: 134 FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESH 193 + + G+ L +E +IL LM + + + Q+ A+Y + E +E N +E Sbjct: 61 DTQAKVVLCAGKTIDLTAKEFQILRKLMVHPEHIITRDQLEEALYA-WGEEIESNAIEVF 119 Query: 194 ISKLRKKLRNKLGFDPVDSKRFLGY 218 I +LRK K+G + + R LGY Sbjct: 120 IYQLRK----KIGSSSIKTIRGLGY 140 >gi|28870545|ref|NP_793164.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213970019|ref|ZP_03398151.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] gi|301381374|ref|ZP_07229792.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato Max13] gi|302062145|ref|ZP_07253686.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato K40] gi|302130455|ref|ZP_07256445.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853793|gb|AAO56859.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213925123|gb|EEB58686.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] Length = 222 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/227 (23%), Positives = 103/227 (45%), Gaps = 24/227 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D + D +A G G +++ + +S D+ ++ L G G +V Sbjct: 3 LLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 L+ R P++ ++ S ++ +G DD + KP H E+ R+ A+ RR Sbjct: 63 LQQWR--GKGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L+ + + G V DG D ++ F R+L Y M + G+ ++K+ Sbjct: 121 GMANQPTLESAGLNLDEGRQCVSRDGTDIQLTSAEF-------RLLRYFMLHPGQILSKS 173 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +Y +E + NV+E H++ LR+ KLG ++++R GY Sbjct: 174 HLSEHLYDGENER-DSNVIEVHVNHLRR----KLGRAVIETRRGQGY 215 >gi|216538|dbj|BAA03143.1| BasR [Escherichia coli] Length = 222 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 12/165 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L RI + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR---H 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 NN+ E+ G + + R + GE L +E +L LM G V + +++ IY Sbjct: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D N +E HI LR+K+G + + R GY + N Sbjct: 180 N-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219 >gi|296330430|ref|ZP_06872910.1| hypothetical protein BSU6633_04979 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675976|ref|YP_003867648.1| Subtilin biosynthesis regulatory protein spaR [Bacillus subtilis subsp. spizizenii str. W23] gi|417799|sp|P33112|SPAR_BACSU RecName: Full=Transcriptional regulatory protein spaR; AltName: Full=Subtilin biosynthesis regulatory protein spaR gi|143570|gb|AAA22780.1| spaR [Bacillus subtilis] gi|595323|gb|AAB91594.1| SpaR [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|296152433|gb|EFG93302.1| hypothetical protein BSU6633_04979 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414220|gb|ADM39339.1| Subtilin biosynthesis regulatory protein spaR [Bacillus subtilis subsp. spizizenii str. W23] Length = 220 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 6/162 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 EL + IR P++ ++ + + +G DD + KP RE+ ARV A RR Sbjct: 60 FELCKQIRPLVDCPILFLTAKTEEEAIVKGLITGGDDYITKPFGVRELSARVNAHLRRER 119 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + R +G + F D ++ + L + E +I E+L ++G+ ++ QI+ I Sbjct: 120 RDKHQSKRVISGFLFHF-DSKEVFINNNKLNLTKNEYKICEFLAQHKGRTFSREQIYEEI 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 YGL A+ + E I +RKK + DP+ + +GY Sbjct: 179 YGLEGNALYSTITE-FIRTIRKKCKEH-NADPIKTVWGVGYK 218 >gi|81427892|ref|YP_394891.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|4104605|gb|AAD10265.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78609533|emb|CAI54579.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 228 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 10/169 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +E+ + +R SQVP++ +S + + +G DD V+KP + E++ARV ++ RR Sbjct: 61 IEVIKAVRKDSQVPILVVSAKTTDMDKIQGLITGADDYVSKPFNPLEVMARVKSLLRRSQ 120 Query: 119 LKVSN---NRAETGPIRVFSDGRD-PEVQGEVFPLPRRERRILEYLMANRGKRV-AKTQI 173 +V+N + E GP+ + D + + G+ L E IL YL+A+ RV + I Sbjct: 121 QQVTNEVPDILEVGPLVIKRDSHEVTTIAGKQIQLTALEFGIL-YLLASHPNRVFSADDI 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 F ++ + V V H+S LR K+ G +++ +GY ++ Sbjct: 180 FERVWKQ-ESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227 >gi|94986248|ref|YP_605612.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94556529|gb|ABF46443.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 221 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 5/155 (3%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R +S VP+I ++ ++ + G DD + KP H E++ARV R+ +VS + + Sbjct: 69 LRKNSAVPIIVLTARDTVDEKVRLLGLGADDYLIKPFHPDELIARVKVQLRQ-RVSESLS 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GLFDEAV 185 G + + R + E L +E IL L+ G+ ++ +I I+ G E Sbjct: 128 -MGDLTLDPQKRLVTYKNEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGRLPEG- 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVV+ H++ LR KLR+ G+ + + R +GY++ Sbjct: 186 -SNVVDVHMANLRAKLRDLDGYGLLRTVRGVGYAL 219 >gi|186685833|ref|YP_001869029.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468285|gb|ACC84086.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 242 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 12/147 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S VP+I ++ + + + G DD V KP +E+ AR+ ++ RR V N A Sbjct: 71 LRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR--VDKNGA 128 Query: 127 ETGP---------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 P I++ ++ R E L E +LE L++ G+ ++++I + Sbjct: 129 SGIPSSGVIHVANIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEV 188 Query: 178 YGLFDE-AVEENVVESHISKLRKKLRN 203 +G E V+ VV+ HIS+LR KL + Sbjct: 189 WGYTPERHVDTRVVDVHISRLRAKLED 215 >gi|309774945|ref|ZP_07669963.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308917271|gb|EFP62993.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 233 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 8/174 (4%) Query: 35 EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG 94 E L+ + +ED + I ++ E ++ R +RA VP+I +S + G Sbjct: 35 ESGLKRALQEDFALILLDVMLPKEDGFQVCRNLRAVKNVPIILVSAKREDMDKIRGLGLG 94 Query: 95 VDDVVNKPIHHREILARVA---AIYRRLKVSNNRAETG----PIRVFSDGRDPEVQGEVF 147 +D + KP + E++ARV A Y RL R E + + + + + G Sbjct: 95 ANDYIVKPFNPSELIARVKSQIANYERLTQGTQRKENQLQIENLTIDLNSHEVFLDGNSL 154 Query: 148 PLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 LP +E +L +L N +K Q+F I+GL D E + V HI+++R+K+ Sbjct: 155 VLPNKEFELLVFLAKNPNIVFSKDQLFEKIWGL-DAIGEISTVTVHINRIREKI 207 >gi|302669419|ref|YP_003829379.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302393892|gb|ADL32797.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 227 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 4/132 (3%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQG-EVFP 148 D G DD + KP E+LARV A+ RR S G + + G + G + Sbjct: 95 LDLGADDYLPKPFDMGELLARVRAMLRRKADFSQPNLTCGNLTLDRAGYELSTPGHDKIR 154 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 L RE +++E LM + G+ ++ I+ D + NVV ++S LRKKL + Sbjct: 155 LSGREFQMMELLMTSPGRIISVDNFMDRIWA--DGEADVNVVWVYVSNLRKKLASLDATC 212 Query: 209 PVDSKRFLGYSI 220 + + R LGYSI Sbjct: 213 EIKASRGLGYSI 224 >gi|256842825|ref|ZP_05548313.1| response regulator [Lactobacillus crispatus 125-2-CHN] gi|256848811|ref|ZP_05554245.1| response regulator [Lactobacillus crispatus MV-1A-US] gi|312977655|ref|ZP_07789402.1| DNA-binding response regulator ResD [Lactobacillus crispatus CTV-05] gi|256614245|gb|EEU19446.1| response regulator [Lactobacillus crispatus 125-2-CHN] gi|256714350|gb|EEU29337.1| response regulator [Lactobacillus crispatus MV-1A-US] gi|310895394|gb|EFQ44461.1| DNA-binding response regulator ResD [Lactobacillus crispatus CTV-05] Length = 240 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 25/179 (13%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ + +RA S VP+I ++ S + G D+ V KP ++AR+ A++RR+ Sbjct: 64 IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI----------------LEYLMAN 163 + E P D +D E+ + + + R + L Y MA Sbjct: 124 MM-----EEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQ 178 Query: 164 RGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + K+V ++ Q+ ++G ++ EE V++HI KLR+KL K+G + + +GY D Sbjct: 179 KPKQVFSRDQLLELVWG-YEYYGEERTVDAHIKKLRQKL-EKVGAKVIQTVWGVGYKFD 235 >gi|148560182|ref|YP_001259941.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella ovis ATCC 25840] gi|148371439|gb|ABQ61418.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella ovis ATCC 25840] Length = 228 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 20/171 (11%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + G DD V KP E+LARV A+ R Sbjct: 64 IELCRRLRQRPETGRLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 123 Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R LKV + + RV+ ++ EV L E R+LEY M + G+ Sbjct: 124 RANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSPGRVF 176 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +++Q+ ++G D V++ V+ H+ +LRK + D + + R GYS Sbjct: 177 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKAINVGRAADLIRTVRGAGYS 226 >gi|126699731|ref|YP_001088628.1| two-component system response regulator [Clostridium difficile 630] gi|254975704|ref|ZP_05272176.1| two-component system response regulator [Clostridium difficile QCD-66c26] gi|255093090|ref|ZP_05322568.1| two-component system response regulator [Clostridium difficile CIP 107932] gi|255101245|ref|ZP_05330222.1| two-component system response regulator [Clostridium difficile QCD-63q42] gi|255307120|ref|ZP_05351291.1| two-component system response regulator [Clostridium difficile ATCC 43255] gi|255314833|ref|ZP_05356416.1| two-component system response regulator [Clostridium difficile QCD-76w55] gi|255517507|ref|ZP_05385183.1| two-component system response regulator [Clostridium difficile QCD-97b34] gi|255650618|ref|ZP_05397520.1| two-component system response regulator [Clostridium difficile QCD-37x79] gi|255656088|ref|ZP_05401497.1| two-component system response regulator [Clostridium difficile QCD-23m63] gi|260683714|ref|YP_003214999.1| two-component system response regulator [Clostridium difficile CD196] gi|260687374|ref|YP_003218508.1| two-component system response regulator [Clostridium difficile R20291] gi|296450481|ref|ZP_06892237.1| response regulator [Clostridium difficile NAP08] gi|296879395|ref|ZP_06903389.1| response regulator [Clostridium difficile NAP07] gi|115251168|emb|CAJ68999.1| Two-component response regulator [Clostridium difficile] gi|260209877|emb|CBA63796.1| two-component system response regulator [Clostridium difficile CD196] gi|260213391|emb|CBE05019.1| two-component system response regulator [Clostridium difficile R20291] gi|296260742|gb|EFH07581.1| response regulator [Clostridium difficile NAP08] gi|296429541|gb|EFH15394.1| response regulator [Clostridium difficile NAP07] Length = 222 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 11/145 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + ++IR S VP+I ++ L FD DD + KP ++ RV AI RR Sbjct: 64 VCKMIRKSSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRR---- 119 Query: 123 NNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +N+ VF + E+ GE L +E IL+ L+ + + + + + Sbjct: 120 SNKTINDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITREGLLDS 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 I+G +D + +V++HI +RKK+ Sbjct: 180 IWG-YDYYGDTRIVDAHIKNIRKKI 203 >gi|50843487|ref|YP_056714.1| putative two-component system response regulator [Propionibacterium acnes KPA171202] gi|50841089|gb|AAT83756.1| putative two-component system response regulator [Propionibacterium acnes KPA171202] gi|315107835|gb|EFT79811.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] Length = 243 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 8/133 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146 +G DD V KP E++AR+ A+ RR + + ++ G + + + R+ GE Sbjct: 108 LTAGGDDYVTKPFSLEEVIARLRALLRRSGATEPKPDSMLTVGDLTLDENSREVRRAGEE 167 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L E +L Y M N + ++K QI ++ +D + NVVE +IS LRKK+ G Sbjct: 168 IHLTTTEFELLRYFMRNPKRVLSKAQILDRVWN-YDFRGQANVVELYISYLRKKIDR--G 224 Query: 207 FDP-VDSKRFLGY 218 P + + R GY Sbjct: 225 HKPMIHTMRGAGY 237 >gi|66767745|ref|YP_242507.1| DNA-binding response regulator CreB [Xanthomonas campestris pv. campestris str. 8004] gi|66573077|gb|AAY48487.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] Length = 231 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 7/166 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R+ S+VP+I ++ + + G DD + KP RE++ARV A RR V Sbjct: 66 EVCRTLRSFSEVPVIFLTARNDEIDRVLGLELGADDYMAKPFSPRELVARVRARLRRRSV 125 Query: 122 SNNRAETG--PIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +AE G P F+ DG + PL R E +L L+ G +++TQ+ Sbjct: 126 AVAQAEPGWQPHGAFAIDRDGSRIRYGETLLPLTRYEYALLAALLQRPGAILSRTQLMDR 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 + ++ + V++HI LR KLR + DP+ + R LGY+++ Sbjct: 186 GWDASADSADRT-VDTHIKTLRAKLRQAGVPADPIRTHRGLGYALE 230 >gi|2832806|emb|CAA11730.1| putative DNA binding response regulator, YvrH [Bacillus subtilis] Length = 369 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 7/168 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-- 114 G E +IR +S P+ ++ S L F G DD + KP + E+ AR+ A Sbjct: 192 GMSGFEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHL 251 Query: 115 --IYRRLKVSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 Y+ + S+N+ T FS + V GE + ++L+Y + ++K Sbjct: 252 KRTYQSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKD 311 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218 QI+ ++G + + N V HI KLR+K R+ + + + R LGY Sbjct: 312 QIYEKVWG-YPSYGDNNTVMVHIRKLREKTERDPSNPEYIVTVRGLGY 358 >gi|83746149|ref|ZP_00943203.1| Hypothetical Protein RRSL_04185 [Ralstonia solanacearum UW551] gi|207722048|ref|YP_002252486.1| response regulator protein [Ralstonia solanacearum MolK2] gi|207741838|ref|YP_002258230.1| response regulator transcription regulator protein [Ralstonia solanacearum IPO1609] gi|300702429|ref|YP_003744029.1| transcriptional regulatory protein [Ralstonia solanacearum CFBP2957] gi|83727115|gb|EAP74239.1| Hypothetical Protein RRSL_04185 [Ralstonia solanacearum UW551] gi|206587222|emb|CAQ17806.1| response regulator protein [Ralstonia solanacearum MolK2] gi|206593222|emb|CAQ60149.1| response regulator transcription regulator protein [Ralstonia solanacearum IPO1609] gi|299070090|emb|CBJ41377.1| Transcriptional regulatory protein [Ralstonia solanacearum CFBP2957] Length = 221 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 87/187 (46%), Gaps = 26/187 (13%) Query: 45 DVSAIEAFLIGK-GEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 DV ++ L G+ G VL R +RA VP++ ++ ++ + D G DD V KP Sbjct: 46 DVLLLDLGLPGQDGHAVL---RTLRARDNPVPVLILTARDAVDERVRGLDGGADDYVLKP 102 Query: 103 IHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR---DPEVQ------GEVFPLPRRE 153 E+LAR+ A+ RR P V S+G DP GE L RE Sbjct: 103 FEMVELLARMRAVLRR-----RGGAASP--VLSNGMLSLDPATHEVRVGDGEAVRLSGRE 155 Query: 154 RRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK 213 +L+ LM G ++++++ IYG E V N VE I LRK KLG + + + Sbjct: 156 FALLQTLMLRPGAILSRSELEERIYGWGHE-VASNAVEFLIHALRK----KLGAESIKNV 210 Query: 214 RFLGYSI 220 R +G+ + Sbjct: 211 RGVGWMV 217 >gi|330967384|gb|EGH67644.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 229 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 12/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + D + ++ NS E E S R D+ ++ + + Sbjct: 4 VLLVDDDRELTDMLSQYLTRERFTVTCTNSAEEGEVEALSGRHDIVVLDIMM--PRMSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R IRA SQVP++ ++ + + G DD V KP E++AR+ AI RR++ Sbjct: 62 EVLRRIRAQSQVPVVLLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRS 121 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + G + ++ R+ QG L E +LE L + G+ V+K + Sbjct: 122 VPPTDAVRDVLHAGELALWPGKREARWQGRALELTGNEFCLLEELARHAGQLVSKQNLSM 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220 G A + ++ HIS +R KL RN + S R LGY + Sbjct: 182 NALG-RPLARYDRSIDVHISSIRHKLGPRND-NQSWIQSVRNLGYML 226 >gi|320107368|ref|YP_004182958.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925889|gb|ADV82964.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 249 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 86/174 (49%), Gaps = 16/174 (9%) Query: 44 EDVSAIEAFLIGKGEKVLELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 E + A+ ++ G E+ R +R A + VP++ ++ + L+ F +G DD +NKP Sbjct: 49 EKIGAVLLDVMLPGLDGFEIVRALRDAQNYVPVLMLTARSRPEDVLEGFSAGADDYLNKP 108 Query: 103 IHHREILARVAAIYRRLK----VSNNRAE---------TGPIRVFSDGRDPEVQGEVFPL 149 ++AR+ + RR++ V+N E TG + F D + EV G+V L Sbjct: 109 FQLAILMARLTGLLRRMRWQQAVTNAPDEEIQDIYTFGTGKVIRF-DALELEVNGKVTRL 167 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 E ++ YL+ GK V++ +I ++ + E + +++ I +LR+ L + Sbjct: 168 TLMEAELMRYLVEREGKIVSRKEILEEVWRV-REDTDTRAIDNFIVRLRRYLED 220 >gi|289424048|ref|ZP_06425834.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L] gi|289155473|gb|EFD04152.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L] Length = 231 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 16/131 (12%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAETGPIRVFSDGR---DPEV 142 F SG DD + KP +E+L RV A+ RR+K NN T P + + R EV Sbjct: 93 FQSGADDYIVKPFSIKELLMRVQALIRRVKKDSDSKKNNMINTPPFLLDPNKRKLYKNEV 152 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + ++ P E I++YLM N + +++ QI ++G D + +V+ +I +++R Sbjct: 153 EVDLTPT---EFSIVKYLMTNDSQSLSRDQILEEVWGSAD-LYDYKIVDVNI----RRIR 204 Query: 203 NKLGFDPVDSK 213 NK+ DP K Sbjct: 205 NKIEDDPSKPK 215 >gi|225568375|ref|ZP_03777400.1| hypothetical protein CLOHYLEM_04452 [Clostridium hylemonae DSM 15053] gi|225162823|gb|EEG75442.1| hypothetical protein CLOHYLEM_04452 [Clostridium hylemonae DSM 15053] Length = 232 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 14/170 (8%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL +IIR S+VP+I ++ + D G DD + KP +L+R+ A+ RR Sbjct: 62 ELCKIIRRTSKVPIIFLTAADEETDIIMGLDIGGDDYITKPFKLAILLSRINALLRR--- 118 Query: 122 SNNRAETGPIRVFSDG-RDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIF 174 S+N ET + S+G + ++GEV+ L E ++L M N ++ QI Sbjct: 119 SDNFNET-TTELNSNGIKVKLLKGEVYKNESQLDLTASEYKLLCLFMENPDIVLSPEQIL 177 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223 S ++ ++ ++ + + +I +LR K+ + G + + R +GY WN Sbjct: 178 SKLWDCDEKYIDSSTLTVYIRRLRTKIEDTPGQPQKILTVRGMGYK--WN 225 >gi|148378611|ref|YP_001253152.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931129|ref|YP_001382998.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153935657|ref|YP_001386545.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|153941463|ref|YP_001389974.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|148288095|emb|CAL82163.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927173|gb|ABS32673.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152931571|gb|ABS37070.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152937359|gb|ABS42857.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318058|gb|ADF98435.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] gi|322804930|emb|CBZ02489.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 230 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 91/208 (43%), Gaps = 16/208 (7%) Query: 27 EGFNSLEF---EEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPS 83 EG+N + EE L+ RE+V+ + ++ LE+ + R +P++ +S Sbjct: 25 EGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMDGLEVCKRAREKYSIPILMLSAKVE 84 Query: 84 LQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-------LKVSNNRAETGPIRVFSD 136 ++ +G DD V KP +H E+ R+ A+ RR +++S+N + + Sbjct: 85 DMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYFLNTKMQISDNIIRIESMVIDKK 144 Query: 137 GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG--LFDEAVEENVVESHI 194 + L RE IL L NRG + +IF ++ F N V H+ Sbjct: 145 QHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIFEKVWKERYFQ---SNNTVMVHM 201 Query: 195 SKLRKKLRNKL-GFDPVDSKRFLGYSID 221 S+LR K+ + G + + +GY I+ Sbjct: 202 SRLRDKIEQHMEGSKVIHTVWGVGYKIE 229 >gi|16131939|ref|NP_418537.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli str. K-12 substr. MG1655] gi|89110834|ref|AP_004614.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli str. K-12 substr. W3110] gi|170083565|ref|YP_001732885.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli str. K-12 substr. DH10B] gi|238903221|ref|YP_002929017.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli BW2952] gi|34395951|sp|P30843|BASR_ECOLI RecName: Full=Transcriptional regulatory protein BasR gi|536957|gb|AAA97012.1| basR [Escherichia coli str. K-12 substr. MG1655] gi|1790552|gb|AAC77074.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli str. K-12 substr. MG1655] gi|85676865|dbj|BAE78115.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli str. K12 substr. W3110] gi|169891400|gb|ACB05107.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli str. K-12 substr. DH10B] gi|238860857|gb|ACR62855.1| DNA-binding response regulator in two-component regulatory system with BasS [Escherichia coli BW2952] gi|260451058|gb|ACX41480.1| two component transcriptional regulator, winged helix family [Escherichia coli DH1] gi|315138669|dbj|BAJ45828.1| DNA-binding transcriptional regulator BasR [Escherichia coli DH1] gi|323380500|gb|ADX52768.1| two component transcriptional regulator, winged helix family [Escherichia coli KO11] Length = 222 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 12/165 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L RI + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 63 LARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALLRR---H 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 NN+ E+ G + + R + GE L +E +L LM G V + +++ IY Sbjct: 120 NNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSRLMLKAGSPVHREILYNDIY 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D N +E HI LR+K+G + + R GY + N Sbjct: 180 N-WDNEPSTNTLEVHI----HNLRDKVGKARIRTVRGFGYMLVAN 219 >gi|332669311|ref|YP_004452319.1| winged helix family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338349|gb|AEE44932.1| two component transcriptional regulator, winged helix family [Cellulomonas fimi ATCC 484] Length = 240 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 62/117 (52%), Gaps = 7/117 (5%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLK------VSNNRAETGPIRVFSDGRDPEVQG 144 + G DD +NKP +E+LARV A+ RR +++ +G +RV R + G Sbjct: 95 LEEGADDYLNKPFDPQELLARVRAVLRRAVPGQPSLTASDVLVSGGLRVDRAARRATLDG 154 Query: 145 EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L + +L+YLM + G+ + + ++ +A++G F+ V V+ ++++R+ L Sbjct: 155 RPVALTPKASLLLDYLMTHPGELLTRERLLAALWG-FESMVTTRAVDHRVAEIRRVL 210 >gi|313832563|gb|EFS70277.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] Length = 243 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 8/133 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET----GPIRVFSDGRDPEVQGEV 146 +G DD V KP E++AR+ A RR + + ++ G + + D R+ GE Sbjct: 108 LTAGGDDYVTKPFSLEEVIARLRAPLRRSGATEPKPDSMLTVGDLTLDEDSREVRRAGEE 167 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 L E +L Y M N + ++K QI ++ +D + NVVE +IS LRKK+ G Sbjct: 168 IHLTTTEFELLRYFMRNPKRVLSKAQILDRVWN-YDFRGQANVVELYISYLRKKIDR--G 224 Query: 207 FDP-VDSKRFLGY 218 P + + R GY Sbjct: 225 HKPMIHTMRGAGY 237 >gi|316935886|ref|YP_004110868.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315603600|gb|ADU46135.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 240 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 12/150 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE +L R IR S VP++ ++ ++ ++ G DD V KP RE+L R+ I Sbjct: 74 GETGFDLARSIRETSDVPIVMLTARHEAESRIEGLQIGADDYVAKPFEPRELLLRIGNIL 133 Query: 117 RRLK-VSNNRAET---GPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKT 171 +R +AET GP VF R QG E+ L RER +L L A G+ V + Sbjct: 134 KRTAPAPAAKAETVAFGPY-VFHIERGELRQGDEIVHLTDRERDMLRMLAAAPGETVPRG 192 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + A E V+ I++LR+K+ Sbjct: 193 DLSGA------GNANERAVDVQINRLRRKI 216 >gi|227820289|ref|YP_002824260.1| two-component response regulator protein [Sinorhizobium fredii NGR234] gi|227339288|gb|ACP23507.1| probable two-component response regulator protein [Sinorhizobium fredii NGR234] Length = 225 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 5/163 (3%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L++ R +RA ++ ++ ++ S + + D G DD + KP E ARV + RR Sbjct: 60 LDVLRAMRARQNRAAVLILTARGSPEERVKGLDLGADDYLIKPFDIGEFEARVRVLLRRQ 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ G + + R G +P RE +LE L GK VAK I ++ Sbjct: 120 AGLRSSIVSYGNVSLDLTARSFSAGGVPIEIPARELGLLELLFMRAGKVVAKDAIVQSLT 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL D+ + N +E ++S+LRK+L G V + R +GY +D Sbjct: 180 GL-DDDLSPNAIEQYVSRLRKRL-APYGL-TVRTARGIGYYLD 219 >gi|225626512|ref|ZP_03784551.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella ceti str. Cudo] gi|225618169|gb|EEH15212.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella ceti str. Cudo] Length = 255 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 20/171 (11%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + G DD V KP E+LARV A+ R Sbjct: 91 IELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 150 Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R LKV + + RV+ ++ EV L E R+LEY M + G+ Sbjct: 151 RANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSPGRVF 203 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +++Q+ ++G D V++ V+ H+ +LRK + D + + R GYS Sbjct: 204 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKVINVGRAADSIRTVRGAGYS 253 >gi|218551702|ref|YP_002385494.1| DNA-binding response regulator CreB [Escherichia fergusonii ATCC 35469] gi|218359244|emb|CAQ91910.1| DNA-binding response regulator in two-component regulatory system with CreC [Escherichia fergusonii ATCC 35469] gi|324112609|gb|EGC06586.1| response regulator receiver domain-containing protein [Escherichia fergusonii B253] gi|325495931|gb|EGC93790.1| DNA-binding response regulator CreB [Escherichia fergusonii ECD227] Length = 229 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 88/209 (42%), Gaps = 46/209 (22%) Query: 50 EAFLIGKGEKVLELPRIIRAHSQVPLIGISD------------------YPSLQTT---- 87 E FL+ E+ LP + +AH QVP + I D +P+L Sbjct: 26 EGFLVEAFER--GLPALEKAHFQVPDVAILDVGLPDISGFELCRQLLERHPALPILFLTA 83 Query: 88 -------LDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR-- 138 L + G DD V KP RE+ ARV + RR+K + P V G+ Sbjct: 84 RSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRRVK-----KFSAPSPVIRCGQFE 138 Query: 139 --DPEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 +P Q L R E +L+ L+ + G+ ++ Q+ ++ + + V++ Sbjct: 139 LNEPAAQISWCDTPLQLTRYEFLLLKTLIMSPGRVWSRQQLMDKVWADAQDTFDRT-VDT 197 Query: 193 HISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 HI LR KLR P+++ R +GYS+ Sbjct: 198 HIKTLRAKLRAINPALSPINTHRGMGYSL 226 >gi|161506705|ref|YP_001576655.1| putative response regulator [Lactobacillus helveticus DPC 4571] gi|160347694|gb|ABX26368.1| putative response regulator [Lactobacillus helveticus DPC 4571] Length = 238 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 81/172 (47%), Gaps = 13/172 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R +P+I ++ + + + G DD V KP +RE++ARV A RR Sbjct: 62 LEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRD 121 Query: 121 V-----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + ++ + G + + D E G+ L RE +L YL + G+ + Sbjct: 122 IVKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGQKIELTHREFELLYYLAQHMGQVMT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + ++G +D + V+ + +LR+K+ N + + ++R +GY + Sbjct: 182 REHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYV 232 >gi|197117560|ref|YP_002137987.1| winged-helix transcriptional response regulator KdpE [Geobacter bemidjiensis Bem] gi|197086920|gb|ACH38191.1| winged-helix transcriptional response regulator KdpE [Geobacter bemidjiensis Bem] Length = 235 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 3/143 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 +E+ R IR SQVP+I +S + D+G DD + KP E+LAR+ A RR Sbjct: 69 IEVIRRIREWSQVPIIVLSVREREDDKVAALDAGADDYLTKPFGVGELLARMRASLRRSA 128 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++S +G + V + R V+G L E +L L+ + K + +QI I+ Sbjct: 129 VQLSEPVFSSGDLTVDLNLRRVTVEGAEVQLTPTEYDLLRLLITHADKVITHSQILKQIW 188 Query: 179 GLFDEAVEENVVESHISKLRKKL 201 G+ + + V+ IS LRKK+ Sbjct: 189 GVAYQD-QPQVLRVTISNLRKKV 210 >gi|56540661|gb|AAV92784.1| PmrA [Salmonella enterica] gi|56540663|gb|AAV92785.1| PmrA [Salmonella enterica] Length = 222 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 13/223 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G ++ E S + ++ L + + + Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDE-DGLH 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L RI + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 62 FLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRR--- 118 Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 NN+ E+ G + + G+ L +E +L LM G V + +++ I Sbjct: 119 HNNQGESELTVGNLTLNMGRHQAWRDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDI 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Y +D N +E HI LR+K+G + + R GY + Sbjct: 179 YN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216 >gi|88857640|ref|ZP_01132283.1| transcriptional regulatory protein RstA [Pseudoalteromonas tunicata D2] gi|88820837|gb|EAR30649.1| transcriptional regulatory protein RstA [Pseudoalteromonas tunicata D2] Length = 246 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 11/144 (7%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN-RA 126 RA Q P++ ++ + + G DD V KP+ R +L+R+ A+ RR N A Sbjct: 78 RAFYQGPILMMTARDDEMDEILGLELGADDYVTKPVKPRVLLSRIKALLRRSNTPNQPNA 137 Query: 127 ET---------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ET G + + + R ++ G+ + E +L YL + G+ V++T++F+ + Sbjct: 138 ETNLNEGLIELGSLYIDAPSRAVKLHGQTIAISSNEFDLLWYLAQSAGQVVSRTELFNQL 197 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 G + + + ++ IS+LRKKL Sbjct: 198 RGSEYDGFDRS-IDIFISRLRKKL 220 >gi|119716281|ref|YP_923246.1| response regulator receiver [Nocardioides sp. JS614] gi|119536942|gb|ABL81559.1| response regulator receiver [Nocardioides sp. JS614] Length = 250 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 14/124 (11%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-------------GPIRVFSDG 137 ++G DD + KP RE+ ARV A++RR + GP+RV +G Sbjct: 103 LETGADDFIAKPFSARELKARVNAMFRRPRTGGGAQRPDAPAEDPHELLVHGPLRVDVEG 162 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 R G+ L R E +L LM + ++ + +++G D A + ++VE H+ L Sbjct: 163 RRAFRDGQELVLTRTEFDLLTELMRAPSRVWSREALLRSVWGT-DWASDTHLVEVHVGNL 221 Query: 198 RKKL 201 R+KL Sbjct: 222 RRKL 225 >gi|319938205|ref|ZP_08012603.1| winged helix family Two component transcriptional regulator [Coprobacillus sp. 29_1] gi|319806726|gb|EFW03375.1| winged helix family Two component transcriptional regulator [Coprobacillus sp. 29_1] Length = 226 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 30/208 (14%) Query: 15 YIALFGDDGVSL-----EGFNSLEFEEWLQSSAREDV-----SAIEAFL--IGKGEKV-L 61 Y L DD V L E FN + + +AR+ + + ++ L I GE Sbjct: 3 YDCLIVDDEVPLAQSTTEYFNLFDVKTVAVFNARDCIEFLKNNTVDLILLDINLGETSGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + +R +Q+P++ IS S L G DD + KP +LA+V KV Sbjct: 63 DLCQALRKTTQIPILFISARQSDDDILLALHIGGDDYIRKPYSLHILLAKV-------KV 115 Query: 122 SNNRAETGPIRVFSD--------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + NR T ++ + + + G+ L E R+L YL+ NR K + K +I Sbjct: 116 TLNRYGTKTSHIYENRHLYIDFSAQKVSIHGQPIKLKTLEYRLLCYLIENRNKVLTKEEI 175 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL 201 F+ ++ D + + HI LR+K+ Sbjct: 176 FNNVWR--DHFTSDGTLNVHIRHLREKI 201 >gi|229823947|ref|ZP_04450016.1| hypothetical protein GCWU000282_01251 [Catonella morbi ATCC 51271] gi|229786301|gb|EEP22415.1| hypothetical protein GCWU000282_01251 [Catonella morbi ATCC 51271] Length = 228 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 4/157 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 IR S VP++ +S + + + G DD + KP ++A++ + RR L Sbjct: 67 IRKVSNVPILFLSSHDQATEIVMSINMGADDYITKPFDSMVLVAKIQGLMRRAYELTAET 126 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 +E + QG + L + E +IL L A+ G V++ Q+ ++ + Sbjct: 127 EFSEYHGAMLNLKTTQLHYQGNLVDLTKNEFQILRVLFASAGHYVSRDQLMQELWS-SEV 185 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++N + ++++LRKKL D + +K+ +GY + Sbjct: 186 FIDDNTLSVNMARLRKKLEGVGLEDFIHTKKGIGYGL 222 >gi|284037811|ref|YP_003387741.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283817104|gb|ADB38942.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 230 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 74/140 (52%), Gaps = 6/140 (4%) Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VS 122 I + ++ P++ ++ S+ L F++G DD + KP RE++AR+ A+ +R + Sbjct: 71 IRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSSDAGMQ 130 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL-F 181 N + + + + + + L +E +L+YLM NRG+ V++ I ++ + F Sbjct: 131 TNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKVWDIHF 190 Query: 182 DEAVEENVVESHISKLRKKL 201 D NV++ +++ LRKK+ Sbjct: 191 DTGT--NVIDVYVNFLRKKI 208 >gi|229175929|ref|ZP_04303426.1| DNA-binding response regulator [Bacillus cereus MM3] gi|228607523|gb|EEK64848.1| DNA-binding response regulator [Bacillus cereus MM3] Length = 202 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 9/166 (5%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R ++ +P++ ++ + L G DD V KP ++ E++ R+ + RR+K Sbjct: 39 ELLRLFREKNRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMTRRVK 98 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ G I + R V G+ L RE + + ++N + + ++ Sbjct: 99 KAEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 158 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 159 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEY--IKTIYGVGYKLD 201 >gi|227510659|ref|ZP_03940708.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190311|gb|EEI70378.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 242 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 22/163 (13%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLD---FFDSGVDDVVNKPIHHREILARVA 113 GE+VL+ R+ R + V ++ D T D + G DD V KP RE++AR+ Sbjct: 60 GEEVLKRIRMDRNDTPVIVLTAKD-----TEFDKVFGLEMGADDYVPKPFSPREVIARIN 114 Query: 114 AIYRRLKVSNNRAE-------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160 A+ RR + S ++ TGP + V + L +E +++YL Sbjct: 115 AVLRRYEKSEPSSQQNAAPVKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYL 174 Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + + + +++ Q+ ++G FD + + +V+ I+ LR+K+ + Sbjct: 175 VGHENQVLSRDQLLQGVWG-FDYSGQSRMVDIQIAHLREKIES 216 >gi|223042853|ref|ZP_03612901.1| two-component response regulator [Staphylococcus capitis SK14] gi|222443707|gb|EEE49804.1| two-component response regulator [Staphylococcus capitis SK14] Length = 224 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 7/159 (4%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---V 121 R +R S VP++ +S + + + G DD + KP + ++A++ AIYRR+ V Sbjct: 64 RKMRQESNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFGV 123 Query: 122 SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R V +D + + L + E ILE L+ + + V + + +A++ Sbjct: 124 EEKRTLNWQDTVVDLSKDSIQKADKTIFLSKTEMIILEMLINKKNQIVTRDTLITALWD- 182 Query: 181 FDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DEA V +N + ++++LRKKL D +++K GY Sbjct: 183 -DEAFVSDNTLTVNVNRLRKKLAEIGMDDAIETKVGKGY 220 >gi|153811679|ref|ZP_01964347.1| hypothetical protein RUMOBE_02071 [Ruminococcus obeum ATCC 29174] gi|149832420|gb|EDM87505.1| hypothetical protein RUMOBE_02071 [Ruminococcus obeum ATCC 29174] Length = 233 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 69/151 (45%), Gaps = 22/151 (14%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR S +P+I IS ++ D+G DD + KP E+LAR+ RRL V Sbjct: 69 IRTWSNMPIIVISARSEDSDKIEALDAGADDYITKPFSVEELLARIRVTQRRLAV----I 124 Query: 127 ETGPIR---VFSDGR--------DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +TG I+ VF +G ++GE L E ++L L N GK + T I Sbjct: 125 QTGEIQKTAVFINGELKIDYTAGCTYMRGEELHLTPIEYKLLCLLYCNVGKVLTHTYITQ 184 Query: 176 AIYGLFDEAVEENVVES---HISKLRKKLRN 203 I+G EN V S ++ LRKKL + Sbjct: 185 QIWG----RSSENDVASLRVFMATLRKKLES 211 >gi|111021712|ref|YP_704684.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821242|gb|ABG96526.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 235 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 75/151 (49%), Gaps = 9/151 (5%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVS----NNRAET 128 P++ ++ +++ + G DD V KP E++ R+ I RR KVS + R + Sbjct: 81 PVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGKVSVEEQSARIKF 140 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 I + D R+ G++ L E +L Y M N G ++K +I ++ +D E Sbjct: 141 ADIELDDDTREVWKAGDLVSLSPTEFTLLRYFMVNAGTVLSKPRILDHVWN-YDFGGEVG 199 Query: 189 VVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 VVES++S LR+K+ G P + + R +GY Sbjct: 200 VVESYVSYLRRKVDT--GETPLIHTLRGVGY 228 >gi|148657917|ref|YP_001278122.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148570027|gb|ABQ92172.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 230 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 6/159 (3%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--LKVS 122 RI+R S+VP++ ++ + + G DD V KP E+LARV AI RR ++S Sbjct: 67 RILRQESEVPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMRRSDRRIS 126 Query: 123 NNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R + G IR+ + R L ++E +L LM NRG +++ + ++G Sbjct: 127 ALREVLDAGAIRLDTGSRRAWRDDVELNLSQKEFDLLACLMRNRGIALSRDVLLERVWG- 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGY 218 +D + V+ HI LR+K+ G + + R +GY Sbjct: 186 YDFLGDSRTVDVHIRWLREKVEPDPGKPTYIQTVRGIGY 224 >gi|24371659|ref|NP_715701.1| transcriptional regulatory protein KdpE [Shewanella oneidensis MR-1] gi|24345425|gb|AAN53146.1|AE015457_8 transcriptional regulatory protein KdpE [Shewanella oneidensis MR-1] Length = 229 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/165 (21%), Positives = 85/165 (51%), Gaps = 8/165 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 +EL ++R + P++ ++ + + ++G +D ++KP RE++ R+ + R L Sbjct: 62 IELLHMLRQQDKTPVLVLTARDQEEEKIRLLEAGANDYLSKPFGIRELIVRIKVLMRDLV 121 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + + GP+++ + + L ++E +L +LM++ G+ V ++++ I Sbjct: 122 DTSIAADVLQFGPLKLQKSSHQCWLNQQEIALTKKEFALLAHLMSHPGQLVKQSELLRRI 181 Query: 178 YGLFDEAVEE--NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G E +E + + +S+LRKKL + + ++ LGY + Sbjct: 182 WG---ETHQEDGHYLRILVSQLRKKLNDSDEQQLIKTEPGLGYRL 223 >gi|55981331|ref|YP_144628.1| response regulator [Thermus thermophilus HB8] gi|55772744|dbj|BAD71185.1| response regulator [Thermus thermophilus HB8] Length = 227 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 2/159 (1%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA P++ ++ ++ + G DD + KP H E+LAR+ R + Sbjct: 62 EVARRIRATDDTPILVLTAQDAVDRKVSLLTGGADDYLVKPFHPAELLARIQVQLRHKEG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S A G + ++ R + L +E +L LM+ G+ + +I ++G Sbjct: 122 SEVLA-VGQLELYPGKRQVFFREREVRLSPKEFDLLHLLMSRPGRVFPRPEIEERVWG-R 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ H++ LR KLR + + + R +GY++ Sbjct: 180 PLGKDSNVLDVHMANLRAKLREAGAYGYLRTVRGVGYAV 218 >gi|88800114|ref|ZP_01115683.1| possible baeR; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Reinekea sp. MED297] gi|88777095|gb|EAR08301.1| possible baeR; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Reinekea sp. MED297] Length = 229 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 1/135 (0%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S VP+I ++ L + G DD + KP RE++ARV A+ RR + + Sbjct: 68 VRQFSNVPIIMVTAKVDEIDRLLGLEQGADDYICKPFSAREVVARVRAVLRRQEPTYYER 127 Query: 127 ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 ++ D L E +L+ L+++ GK +++++ + IY V Sbjct: 128 AQSALQFNEDTLSVSTASTQIELTVVEFELLKALVSHPGKIFSRSRLAAIIYSDH-RIVS 186 Query: 187 ENVVESHISKLRKKL 201 E ++SHI K+RKKL Sbjct: 187 ERTIDSHIKKIRKKL 201 >gi|103487528|ref|YP_617089.1| two component transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98977605|gb|ABF53756.1| two component transcriptional regulator, winged helix family [Sphingopyxis alaskensis RB2256] Length = 236 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 17/172 (9%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LEL R +R SQ+P+I ++ G DD + KP R ++AR+ AI RR++ Sbjct: 62 LELLRRLREKSQLPVIFLTSKDDEIDEALGLAMGADDYIAKPFSQRLVIARIRAILRRVE 121 Query: 121 VSNNRAETG--------PIRVFSDGRDPEVQ-----GEVFPLPRRERRILEYLMANRGKR 167 + NRA PI DP G+ L E ILE L + G Sbjct: 122 L--NRAPPSEDDEPVAEPITRGRLTMDPARHKVSWDGKEVTLTVTEFLILETLASRPGIV 179 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 ++ Q+ A Y D +++ ++SHI +LR+K R GFD + + GY Sbjct: 180 RSRNQLMDAAYQ-DDVYIDDRTIDSHIKRLRRKFREVDPGFDAIATLYGAGY 230 >gi|306826127|ref|ZP_07459462.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431603|gb|EFM34584.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 217 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/224 (22%), Positives = 102/224 (45%), Gaps = 16/224 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDG----VSLEGFNSLE-FEEWLQSSAREDVSAIEAFLIGK 56 +++DD ++++G A ++G ++ +G +LE F E+ + + L+ Sbjct: 3 ILVVDDEDMIREGVAAFLREEGYHVILAKDGQEALEKFHEF-------PIHLMVLDLMLP 55 Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 E+ + I + +P+I +S +T + FD DD V KP ++ R+ A+ Sbjct: 56 KRSGFEVLKEINGNHDIPVIVLSALGDEETQMQVFDLYADDHVTKPFSLVLLVKRIQALL 115 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR V + + V V+ E + +E +L+ L+ ++ + +++ QI + Sbjct: 116 RRYYVVEDIWHYQDVTVDFTSYQARVKNEEVAIKPKELLVLKCLIQHKNQVLSREQILES 175 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I F + + VV+ +I LRK KL D + + + GY I Sbjct: 176 ISNDFADLPLDRVVDVYIRNLRK----KLDLDCIVTVKNAGYKI 215 >gi|289628311|ref|ZP_06461265.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647904|ref|ZP_06479247.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv. aesculi str. 2250] gi|298488175|ref|ZP_07006212.1| Copper-sensing two-component system response regulator CpxR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157454|gb|EFH98537.1| Copper-sensing two-component system response regulator CpxR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330869383|gb|EGH04092.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 229 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 62/225 (27%), Positives = 100/225 (44%), Gaps = 12/225 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + + ++ NS E E S R D+ ++ + + Sbjct: 4 VLLVDDDRELTEMLSQYLTRESFTVTCTNSAEEGEIEALSGRHDIVVLDIMM--PRMSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R IRA SQVP+I ++ + + G DD V KP E++AR+ AI RR++ Sbjct: 62 EVLRRIRAQSQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRRVRA 121 Query: 121 ---VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 V R + G + ++ R+ QG L E +LE L + G+ V+K + Sbjct: 122 VPVVETVREVIQAGDLTLWPGKREARWQGVTLELTGNEFCLLEELARHAGQLVSKQNLSM 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGY 218 G A + ++ HIS +R KL RN + S R LGY Sbjct: 182 NALG-RPLARYDRSIDVHISSIRHKLGPRND-NQSWIQSVRNLGY 224 >gi|284066971|gb|ADB77766.1| AdeR [Acinetobacter genomosp. 13] Length = 247 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 10/163 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +Q P+I ++ + G DD V KP + E++ARV A+ RR + +N Sbjct: 78 IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRTQFANKAT 137 Query: 127 ETGP----IRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 I + +D + E + L E +I+ +++ K + ++ + + Sbjct: 138 NKNKIYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D E V+SH+SKLRKKL + + R +GY +D Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLEEQGILQMFINVRGVGYRLD 238 >gi|260102098|ref|ZP_05752335.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075] gi|260084098|gb|EEW68218.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075] Length = 238 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 13/172 (7%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +R +P+I ++ + + + G DD V KP +RE++ARV A RR Sbjct: 62 LEVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRD 121 Query: 121 V-----SNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + ++N+ +T G + + D E G L RE +L YL + G+ + Sbjct: 122 IVKKAEADNQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + ++G +D + V+ + +LR+K+ N + + ++R +GY + Sbjct: 182 REHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGYYV 232 >gi|256158647|ref|ZP_05456530.1| Transcriptional regulatory protein [Brucella ceti M490/95/1] gi|256254051|ref|ZP_05459587.1| Transcriptional regulatory protein [Brucella ceti B1/94] gi|261221191|ref|ZP_05935472.1| two component transcriptional regulator [Brucella ceti B1/94] gi|265997152|ref|ZP_06109709.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|260919775|gb|EEX86428.1| two component transcriptional regulator [Brucella ceti B1/94] gi|262551620|gb|EEZ07610.1| two component transcriptional regulator [Brucella ceti M490/95/1] Length = 228 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 20/171 (11%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +EL R +R + +P+I ++ + G DD V KP E+LARV A+ R Sbjct: 64 IELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLR 123 Query: 118 R---------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R LKV + + RV+ ++ EV L E R+LEY M + G+ Sbjct: 124 RANPSILSHVLKVGDLLLDRQQHRVYR--KEKEVH-----LGPTEFRLLEYFMMSPGRVF 176 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +++Q+ ++G D V++ V+ H+ +LRK + D + + R GYS Sbjct: 177 SRSQLLDGVWG-PDIYVDDRTVDVHVGRLRKVINVGRAADSIRTVRGAGYS 226 >gi|229127391|ref|ZP_04256386.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|229144600|ref|ZP_04273002.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|229150217|ref|ZP_04278439.1| DNA-binding response regulator [Bacillus cereus m1550] gi|296502577|ref|YP_003664277.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|228633336|gb|EEK89943.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228638840|gb|EEK95268.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228656073|gb|EEL11916.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|296323629|gb|ADH06557.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 228 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/156 (22%), Positives = 78/156 (50%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ ++ + F G DD + KP E++ RV A+ +R +++ +++ Sbjct: 71 LRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 130 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + + LP +E +L L A G+ ++ Q+ I+G +D Sbjct: 131 IQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGAKSGRTCSREQLIEEIWG-YDFEG 189 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + + + + R LGY ++ Sbjct: 190 NERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLE 225 >gi|261366508|ref|ZP_05979391.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM 15176] gi|282571780|gb|EFB77315.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM 15176] Length = 233 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 14/142 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + VP+I ++ L G DD ++KP +E+L RV A+ RR Sbjct: 75 LRTFTDVPVIFLTAKDEAADKLAGLGLGADDYISKPFMPQELLLRVYAVLRR-----TYK 129 Query: 127 ETGPIRVFS----DGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E P+ V D EV G++ PL +E +LE L N GK V + A++G Sbjct: 130 EDSPLVVLDGCTIDFSRAEVNKGGKIIPLTAKEHTLLETLARNEGKIVTVDALCEALWG- 188 Query: 181 FDEAVE-ENVVESHISKLRKKL 201 D EN + +H+ ++R+K+ Sbjct: 189 -DNPFGYENSLNAHVRRVREKI 209 >gi|171058342|ref|YP_001790691.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775787|gb|ACB33926.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 245 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 10/171 (5%) Query: 57 GEKVLELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 GE + L R RA + ++ +I ++ S Q + D+G DD ++KP E+LAR+ Sbjct: 57 GESGVSLARRWRADARTRELSIIMLTARSSEQDMVQGLDAGADDYLSKPFSTAELLARIR 116 Query: 114 AIYRR--LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A+ RR + E GP+R+ Q + L E R+L +LM + ++ Sbjct: 117 AVLRRKLPEALEAAVEVGPLRLDPAAHRVFHQHDEVTLGPTEFRLLRFLMTYPERVHSRG 176 Query: 172 QIFSAIYG--LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Q+ ++G +F +EE V+ HI +LR L + +++ R GY + Sbjct: 177 QLLDRVWGDHVF---IEERTVDVHIKRLRGVLAPYGCAELIETVRGAGYRL 224 >gi|172064834|ref|YP_001815546.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997076|gb|ACB67993.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 239 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 92/210 (43%), Gaps = 24/210 (11%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQ-V 73 Y + DG EG LE W A+ L+ G LE+ R RA ++ Sbjct: 29 YEVVHSADGT--EGLRLLEQGNW---------DALILDLMLPGVDGLEICRRARAMARYT 77 Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK--VSNNRAETGPI 131 P+I S S + + G DD + KP E++ARV A+ RR+ ++R + G + Sbjct: 78 PIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDALARDSRIDAGTL 137 Query: 132 RVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 V DP V G L RE +L + + GK ++ + +A++G E Sbjct: 138 DVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDLLNAVWGYQHEGY- 196 Query: 187 ENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 E+ V +HI++LR K+ DP + R L Sbjct: 197 EHTVNTHINRLRAKVEA----DPAEPVRIL 222 >gi|160880093|ref|YP_001559061.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428759|gb|ABX42322.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 229 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 9/205 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ + + EE L + +++ I ++ E Sbjct: 6 LVVDDEKLIVKGIRFSLEQDGMEVDC--AYDGEEALVFAKQKEYDVILLDVMLPRMNGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S +P+I ++ + + G DD + KP + E+ AR+ AI RR Sbjct: 64 VCQQIREFSNMPVIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNTRK 123 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFSA 176 + AE VF D + VF L +E +LE L+ N K ++ + + Sbjct: 124 ASEAEASKTIVFGDLKIDSESRRVFISEKEINLTAKEFDVLELLVLNPNKVYSRENLLNI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++G +D + V+ HI +LR+K+ Sbjct: 184 VWG-YDYPGDVRTVDVHIRRLREKI 207 >gi|270208660|ref|YP_003329431.1| putative response regulator protein [Sinorhizobium meliloti] gi|76880934|gb|ABA56104.1| putative response regulator protein [Sinorhizobium meliloti] Length = 246 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 6/119 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDG--VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59 +++DD + ++ F ++G VSL G + E E L ++ V I L+ GE Sbjct: 11 ILVVDDDSRIRQMLSRYFEEEGYRVSLAG-DGQEMRECLD---KQPVDVILLDLMLPGED 66 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L L R IRA S VP+I ++ + + + G DD + KP H RE+LARV + RR Sbjct: 67 GLTLARDIRARSDVPIIMLTGRSDVVDRVVGLEVGADDYIAKPFHLREVLARVRGVLRR 125 >gi|21673035|ref|NP_661100.1| DNA-binding response regulator [Chlorobium tepidum TLS] gi|21646102|gb|AAM71442.1| DNA-binding response regulator [Chlorobium tepidum TLS] Length = 220 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 73/156 (46%), Gaps = 14/156 (8%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGP 130 S +P+I I+ L + DSG DD + KP E+LAR+ A+ RR +G Sbjct: 71 SSIPVIIITARDGLGERIAGLDSGADDYLVKPFDLDELLARLRAVIRR----QGGQASGL 126 Query: 131 IRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 I DP E L RE +L L+ G+ ++++ + +YG +DE V Sbjct: 127 IGNGQITLDPATHTAFCGEERAVLSSREFAVLHALLLQPGRILSRSALEERVYG-WDEEV 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E N ++ I +LR+ KLG + + R G+ ++ Sbjct: 186 ESNAIDYLIHQLRR----KLGATSIKNIRGAGWMVE 217 >gi|297579859|ref|ZP_06941786.1| DNA-binding response regulator [Vibrio cholerae RC385] gi|297535505|gb|EFH74339.1| DNA-binding response regulator [Vibrio cholerae RC385] Length = 218 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 12/163 (7%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I RA +P++ ++ + + D G D+ + KP E+LAR+ I RR S Sbjct: 63 LRQIRRAGYTLPVMILTARDDISDRVKGLDGGADEYIGKPFALEELLARLRLIIRR---S 119 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE G + + ++ + L R E +IL LM G+ ++K + A++ Sbjct: 120 SGSAEELISVGDLDLSLSKQEIYYAQQALKLTRNEYKILASLMTQAGRVMSKELLQQALH 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++E +N +E HI LRKKL + L V + R +GY I+ Sbjct: 180 G-WEEGSSDNAIEVHIHNLRKKLPDNL----VKNVRGVGYMIE 217 >gi|325662201|ref|ZP_08150816.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471453|gb|EGC74674.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium 4_1_37FAA] Length = 224 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/166 (24%), Positives = 81/166 (48%), Gaps = 16/166 (9%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L I + + VP++ ++ S++ + D+G +D + KP E+LAR+ + RR + S Sbjct: 63 LREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRRPEKS 122 Query: 123 NNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +VF DG++ ++ G+ F L L Y++ N+G +++ ++ Sbjct: 123 EDSCYREGGLEVHVDTHQVFRDGKEIQLSGKEFAL-------LRYMIQNKGIVLSREKLE 175 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D A NV++ +I LRKK+ + + R GY + Sbjct: 176 QHLWN-YDYAGGSNVIDVYIRYLRKKIDEPFEEKLIHTVRGAGYVL 220 >gi|296447620|ref|ZP_06889540.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296254885|gb|EFH01992.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 221 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 6/159 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + R +P++ ++ ++ + +SG DD + KP E++AR+ A+ RR Sbjct: 65 LAELRRQGDAIPVLILTARDAVADRVKGLNSGADDYLVKPFDLEELIARIHALARRGAGR 124 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 A E GPIR+ + + GE L RE +L+ L+ G ++++++ +YG + Sbjct: 125 AAAAIEYGPIRLDPVTHEAWLHGESLELSPREFALLQALLEPPGAVLSRSRLEERLYG-W 183 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V N V+ H+ LRK KLG + + + R +G+ + Sbjct: 184 DREVASNAVDVHLHNLRK----KLGGETIVNVRGVGFRV 218 >gi|293381660|ref|ZP_06627641.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|290921707|gb|EFD98728.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] Length = 242 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 25/179 (13%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ + +RA S VP+I ++ S + G D+ V KP ++AR+ A++RR+ Sbjct: 66 IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 125 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI----------------LEYLMAN 163 + E P D +D E+ + + + R + L Y MA Sbjct: 126 MM-----EEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQ 180 Query: 164 RGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + K+V ++ Q+ ++G ++ EE V++HI KLR+KL K+G + + +GY D Sbjct: 181 KPKQVFSRDQLLELVWG-YEYYGEERTVDAHIKKLRQKL-EKVGAKVIQTVWGVGYKFD 237 >gi|271970052|ref|YP_003344248.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513227|gb|ACZ91505.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 234 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 4/109 (3%) Query: 96 DDVVNKPIHHREILARVAAIYRRLKVS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRR 152 DD V KP E+LAR+ A+ RR + R + G + + + G L Sbjct: 103 DDYVTKPFSLEEVLARIRAVLRRTRGDLDLPTRLQVGDLELDEEAHQVWRSGTPVRLSPT 162 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 E ++L Y M N G+ ++K QI ++ +D + VVES++S LR+K+ Sbjct: 163 EFKLLHYFMVNTGRVLSKAQILDHVWN-YDFGGDAGVVESYVSYLRRKV 210 >gi|227877262|ref|ZP_03995335.1| response regulator [Lactobacillus crispatus JV-V01] gi|227863118|gb|EEJ70564.1| response regulator [Lactobacillus crispatus JV-V01] Length = 234 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 25/179 (13%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ + +RA S VP+I ++ S + G D+ V KP ++AR+ A++RR+ Sbjct: 58 IQVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRV 117 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI----------------LEYLMAN 163 + E P D +D E+ + + + R + L Y MA Sbjct: 118 MM-----EEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQ 172 Query: 164 RGKRV-AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + K+V ++ Q+ ++G ++ EE V++HI KLR+KL K+G + + +GY D Sbjct: 173 KPKQVFSRDQLLELVWG-YEYYGEERTVDAHIKKLRQKL-EKVGAKVIQTVWGVGYKFD 229 >gi|226325933|ref|ZP_03801451.1| hypothetical protein COPCOM_03746 [Coprococcus comes ATCC 27758] gi|225205475|gb|EEG87829.1| hypothetical protein COPCOM_03746 [Coprococcus comes ATCC 27758] Length = 232 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 73/144 (50%), Gaps = 11/144 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV----- 121 IR + +P+I +S + + G DD + KP + E++ARV + RR Sbjct: 67 IRENMSLPIIILSAKSEDADKILGLNIGADDYMTKPFNPLELVARVKSQLRRYTQLGSTA 126 Query: 122 -SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S+N++E TG + + D ++ V GE L E IL L+ N+GK + QI+ I+ Sbjct: 127 RSDNQSEFRTGGLVIRDDLKEVTVDGEKVKLTPIEYNILLLLVKNQGKVFSINQIYENIW 186 Query: 179 GLFDEAV-EENVVESHISKLRKKL 201 +EA+ +N V HI +R+K+ Sbjct: 187 N--EEAIGADNTVAVHIRHIREKI 208 >gi|167822911|ref|ZP_02454382.1| two component transcriptional regulator, winged helix family protein [Burkholderia pseudomallei 9] Length = 241 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 25/173 (14%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA +S +P++ ++ S+ + D G DD + KP E+ ARV A+ RR Sbjct: 63 LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 121 Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A GP V GR V L RE +LE L+ G+ V+K Q Sbjct: 122 -----GAGGGPTVVRHGSLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQ 176 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221 + + + E V N +E ++ +LRKK+ +P + + R LGY ++ Sbjct: 177 LVDHLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRITTVRGLGYCLE 222 >gi|161505227|ref|YP_001572339.1| DNA-binding transcriptional regulator BasR [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866574|gb|ABX23197.1| hypothetical protein SARI_03365 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 222 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 13/223 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G ++ E S + ++ L + + + Sbjct: 3 ILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAERSLESGHYSLMVLDLGLPDE-DGLH 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R+ + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 62 FLTRMRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRR--- 118 Query: 122 SNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 NN+ E+ G + + + G+ L +E +L LM G V + +++ I Sbjct: 119 HNNQGESELAVGNLTLNMGRHQAWMDGQELTLTPKEYALLSRLMLKAGSPVHREILYNDI 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Y +D N +E HI LR+K+G + + R GY + Sbjct: 179 YN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216 >gi|153938117|ref|YP_001390694.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152934013|gb|ABS39511.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318768|gb|ADF99145.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 223 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 7/162 (4%) Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +E+ +R+ S + P+I ++ ++ D+G DD + KP E+ AR+ AI RR Sbjct: 60 IEILNYLRSESIETPVIIVTARDEVEQLAFGLDNGADDYITKPFKLLELRARIHAIIRRF 119 Query: 120 K-VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +N G ++ R E++ + L +E ILEY+ V+ +I IY Sbjct: 120 HGRTNPIINIGNFQLNPITRTVEIENKPVALASKEFDILEYICYRHPAVVSSEEIAEHIY 179 Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 DE + +V+ HI++L+KKL N G + + + R GY Sbjct: 180 ---DENFDPFSSVLRVHIARLKKKLSNASGKEILINIRGKGY 218 >gi|124022336|ref|YP_001016643.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] gi|123962622|gb|ABM77378.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] Length = 240 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 10/163 (6%) Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--- 121 RI + + P++ ++ + + + D+GVDD + KP E++AR+ A+ RR + Sbjct: 74 RIRSSGIKTPILMLTGHDDVTDRVKALDAGVDDYLTKPFSIEELMARLRAMQRRAEQFSG 133 Query: 122 -SNNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S N + I+V + RD L +E +L +LM GK + I Sbjct: 134 DSGNEHQPETIQVADLKMNTSTRDVTRDNRTIQLSVKEYELLHFLMVGAGKVHERDAIMK 193 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 A++G D ++N+++ +I LR+K+ K + + R +G+ Sbjct: 194 AVWG-EDFFGDDNLLDVYIRYLRQKIEQKGAATMIHTVRGVGF 235 >gi|71734983|ref|YP_275297.1| DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485460|ref|ZP_05639501.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|71555536|gb|AAZ34747.1| DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323806|gb|EFW79890.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320327945|gb|EFW83950.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330881161|gb|EGH15310.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330889640|gb|EGH22301.1| DNA-binding response regulator [Pseudomonas syringae pv. mori str. 301020] gi|330989766|gb|EGH87869.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010708|gb|EGH90764.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 222 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 24/227 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D +A G G +++ + + + A E I L G L Sbjct: 3 LLLVEDHVPLADELLAALGRQGYAVDWLA--DGRDAVYQGATEPYDLIVLDLGLPGMPGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 E+ + R P++ ++ S ++ +G DD + KP H E+ R+ A+ RR Sbjct: 61 EVLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L+ + + G V DG D ++ F R+L Y M + G+ ++K+ Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEF-------RLLRYFMLHPGQILSKS 173 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +Y +E + NV+E H++ LR+ KLG V+++R GY Sbjct: 174 HLSEHLYDGENER-DSNVIEVHVNHLRR----KLGRAVVETRRGQGY 215 >gi|71906718|ref|YP_284305.1| two component transcriptional regulator [Dechloromonas aromatica RCB] gi|71846339|gb|AAZ45835.1| two component transcriptional regulator, winged helix family [Dechloromonas aromatica RCB] Length = 230 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 9/163 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++L R +R S +P+I +S + + D+G DD + KP E+LARV A RR Sbjct: 65 IDLIRDVRTWSDIPIIVLSARTAEGDKVAALDAGADDYLIKPFGAAELLARVRAHLRRRF 124 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + T G +RV R E G+ L E R+L YL+AN + Q+ A Sbjct: 125 RAGTTGMTVFEFGNVRVDLGKRIVEKDGQQIHLTPIEFRLLAYLIANPDSVLTHRQLLKA 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++G + + V ++ +RKK+ + DP K L S Sbjct: 185 VWGP-SHIEDSHYVRVYMGHVRKKIED----DPTRPKFILTES 222 >gi|39937428|ref|NP_949704.1| two-component transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39651287|emb|CAE29809.1| two-component transcriptional regulator, winged helix family [Rhodopseudomonas palustris CGA009] Length = 240 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 12/150 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE +L R IR S VP++ ++ ++ ++ G DD V KP RE+L R+ I Sbjct: 74 GETGFDLARSIRETSDVPIVMLTARHEAESRIEGLQIGADDYVAKPFEPRELLLRIGNIL 133 Query: 117 RRLK-VSNNRAET---GPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKT 171 +R +AET GP VF R QG E+ L RER +L L A G+ V + Sbjct: 134 KRTAPAPAAKAETVAFGPY-VFHIERGELRQGDEIVHLTDRERDMLRMLAAAPGETVPRG 192 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + A E V+ I++LR+K+ Sbjct: 193 DLSGA------GNANERAVDVQINRLRRKI 216 >gi|22299966|ref|NP_683213.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22296151|dbj|BAC09975.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 242 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 7/135 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---RLKVSNNRAET- 128 +P++ ++ ++ F++G DD + KP E+LARV A+ R R+ + E Sbjct: 77 IPILMLTALSQTHNKVEGFNAGADDYLTKPFELEEMLARVRALLRRADRIPATAGHREIL 136 Query: 129 --GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVE 186 GP+ + + + G++ L R E +L L+ G+ V+ ++I ++G +D + Sbjct: 137 SYGPLTLVPERFEVSWFGKIIKLTRLEFELLHCLLQRHGQTVSPSEILKEVWG-YDPDDD 195 Query: 187 ENVVESHISKLRKKL 201 + H+ LR KL Sbjct: 196 IETIRVHVRHLRTKL 210 >gi|150018389|ref|YP_001310643.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904854|gb|ABR35687.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 226 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 5/164 (3%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S +P+I ++ ++ + D+G DD + KP E+LAR+ +R Sbjct: 61 LEVLRRIRKTSDLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKRRT 120 Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V R G + + + L RE +L+ L+ N+ + + + Sbjct: 121 VIEKRDTDIISCGLLSLDKMRHKVTYDNKEIELTNREFTLLKILLENKNIVLTRDILMEK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G +D E NV++ +I LR K+ + + + R +GY I Sbjct: 181 VCG-YDYIGETNVIDVYIRFLRTKIDDAFKTKIITTVRGVGYVI 223 >gi|71275170|ref|ZP_00651457.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71899807|ref|ZP_00681957.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|71163979|gb|EAO13694.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71730398|gb|EAO32479.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] Length = 281 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 5/167 (2%) Query: 57 GEKVLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G +E+ R +R A Q P++ ++ SL L FDSG DD + KP +E+ R+ A Sbjct: 112 GMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNA 171 Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR K R ETG + D + +G++ L +IL+ LM V + + Sbjct: 172 LSRRGKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL 231 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G +E + + + HI LR + + ++ +GY I Sbjct: 232 ETRVWG--EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 276 >gi|302671163|ref|YP_003831123.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302395636|gb|ADL34541.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 226 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 4/146 (2%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR S VP+I ++ + + G DD + KP + E+ AR+ AI RR Sbjct: 62 FEVCQQIREFSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRAS 121 Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + G +++ + R V + + RE +LE L +N GK ++ ++ + I Sbjct: 122 KNADSKDVISYGDLKLNEEYRRVFVGSKEINVTSREYELLELLASNPGKVYSREELLTTI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN 203 +G + + V+ HI +LR+KL + Sbjct: 182 WGT-EYPGDVRTVDVHIRRLREKLES 206 >gi|302388461|ref|YP_003824283.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302199089|gb|ADL06660.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 231 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 11/144 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S +P+I +S + + G DD + KP + E++ARV + RR N Sbjct: 67 VRETSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRRYTQLGNMN 126 Query: 127 E--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + D ++ V+GE+ L E IL L+ N GK + +I+ I+ Sbjct: 127 QQPAGQVYKCGGLAINDDNKEVTVEGELIKLTPIEYNILLLLVRNAGKVFSIDEIYEQIW 186 Query: 179 GLFDEAV-EENVVESHISKLRKKL 201 +EA+ +N V HI +R+K+ Sbjct: 187 N--EEAIGADNTVAVHIRHIREKI 208 >gi|294143010|ref|YP_003558988.1| DNA-binding response regulator [Shewanella violacea DSS12] gi|293329479|dbj|BAJ04210.1| DNA-binding response regulator [Shewanella violacea DSS12] Length = 225 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 8/165 (4%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L+L +RA SQ P++ +S + + +G DD + KP E+L R + R Sbjct: 60 LKLLAALRATGSQTPVLILSALGHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMLRG 119 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + G + + R + G L +E ++L+YLM + + +++T +F A+ Sbjct: 120 LAKPTETELSVGNLLMELLTRKVTLDGNELMLQPKEFQLLKYLMEHPNQVISRTLLFEAV 179 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 + FD NV++ HI+KLR+K +LGF + +++ R GY + Sbjct: 180 WDYHFDP--RTNVIDVHIAKLRRKF-EELGFGELIETVRGAGYRL 221 >gi|294084770|ref|YP_003551528.1| winged helix family two component transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292664343|gb|ADE39444.1| two component transcriptional regulator, winged helix family [Candidatus Puniceispirillum marinum IMCC1322] Length = 235 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 75/146 (51%), Gaps = 6/146 (4%) Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R+ R+ ++ +P+I +S D+G DD + KP RE+++RV A+ R Sbjct: 63 IEVCRLFRSRTETKDLPVIILSARGEEGDRTLGLDTGADDYITKPFSPRELVSRVKALLR 122 Query: 118 RLK--VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + ++++ E +++F + G+ PL +E ++L L G+ ++ + Sbjct: 123 RARPALASDMMEFEDLQIFPSRMEVRRAGKTVPLGPKEYQLLLTLFERPGQVFSRPLLLD 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 ++G VEE V+ H S+LRK + Sbjct: 183 RVWG-HGVFVEERTVDVHFSRLRKAI 207 >gi|291558106|emb|CBL35223.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium siraeum V10Sc8a] Length = 227 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 87/168 (51%), Gaps = 15/168 (8%) Query: 61 LELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ + +R+ + P++ ++ ++ + D G DD + KP E+L+RV A+ RR Sbjct: 60 LEVLKTLRSEGNTTPILLLTAKAEVEDRIAGLDMGADDYLPKPFVMGELLSRVRAMLRR- 118 Query: 120 KVSNNRAETGPIRVFSDG----RDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQI 173 +R T I F + E++G + LP+ E +++E LM N+G ++ I Sbjct: 119 ---KDRF-TPDIMTFGNVSLNLSSCELKGPLQSIVLPKIEYKLMELLMLNKGIYLSTDDI 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 ++G ++ E V +IS +RK+L +G D + +KR +GY++ Sbjct: 175 LVKVWG-YESDAESGAVWVYISYVRKRLAT-IGADIEIRAKRSVGYTL 220 >gi|254490292|ref|ZP_05103481.1| phosphate regulon transcriptional regulatory protein PhoB [Methylophaga thiooxidans DMS010] gi|224464425|gb|EEF80685.1| phosphate regulon transcriptional regulatory protein PhoB [Methylophaga thiooxydans DMS010] Length = 230 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 10/166 (6%) Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E R +RA+ + +P+I ++ + + G DD VNKP E++AR+ A+ R Sbjct: 62 IEFIRRLRANEFLANIPVIMLTAKGESEDMVKGLAVGADDYVNKPFSPPELMARIRAVLR 121 Query: 118 RLKVSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + ++ + ++G + + + V L E R+L + M N + ++Q+ Sbjct: 122 RCQPDSSDEGQQLQSGNLVLDTKSHRVTVDDTRIELGPTEFRLLHFFMKNPERAYNRSQL 181 Query: 174 FSAIYGLFDEA-VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G D +EE V+ HI +LRK L + + + R +GY Sbjct: 182 LDYVWG--DTVYIEERTVDVHIRRLRKALESSGHDHLIQTVRGVGY 225 >gi|197285448|ref|YP_002151320.1| DNA-binding transcriptional regulator BaeR [Proteus mirabilis HI4320] gi|227355932|ref|ZP_03840324.1| two-component system response regulator [Proteus mirabilis ATCC 29906] gi|194682935|emb|CAR43323.1| two-component system response regulator [Proteus mirabilis HI4320] gi|227163920|gb|EEI48822.1| two-component system response regulator [Proteus mirabilis ATCC 29906] Length = 235 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 4/151 (2%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G+ + L + +R S +P+I ++ L + G DD + KP RE++ARV Sbjct: 59 LMLPGKDGITLCKELRQFSDIPIIMVTAKTEEVDRLLGLEIGADDYICKPYSPREVVARV 118 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAK 170 + RR + + + V D + ++Q ++ L E R+++ L GK +++ Sbjct: 119 KTLLRRYYRPQDIVQNSAL-VIIDEQAYQIQYHNKILDLTTAEFRLIKALATQPGKVLSR 177 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 Q+ +Y + V + ++SHI LR+KL Sbjct: 178 DQLMDHLYDDY-RIVTDRTIDSHIKNLRRKL 207 >gi|124516766|gb|EAY58274.1| putative two component transcriptional regulator, winged helix family [Leptospirillum rubarum] Length = 259 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 16/166 (9%) Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R IR+ +VP++ +S + + G DD + KP RE++ARV A+ R Sbjct: 71 VEVVRFIRSQKNIGKVPILALSAVSDADWKIRTIEEGADDFLAKPFSSRELVARVHALAR 130 Query: 118 RLK-------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R++ + R + G + V + + + G L E RIL YL+++ + + Sbjct: 131 RVEKERDSGPMPKARYDLGDLVVDTYRYETRIDGREIRLTPIEFRILVYLVSHEDVVIRR 190 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 ++ ++G E V+E+ + HI LR+KL K DS RF+ Sbjct: 191 EELMKVLWGESWE-VDEHNLNVHIWALRRKLGEK-----SDSPRFI 230 >gi|126699904|ref|YP_001088801.1| two-component system response regulator [Clostridium difficile 630] gi|254975883|ref|ZP_05272355.1| two-component system response regulator [Clostridium difficile QCD-66c26] gi|255093270|ref|ZP_05322748.1| two-component system response regulator [Clostridium difficile CIP 107932] gi|255101433|ref|ZP_05330410.1| two-component system response regulator [Clostridium difficile QCD-63q42] gi|255307306|ref|ZP_05351477.1| two-component system response regulator [Clostridium difficile ATCC 43255] gi|255315012|ref|ZP_05356595.1| two-component system response regulator [Clostridium difficile QCD-76w55] gi|255517687|ref|ZP_05385363.1| two-component system response regulator [Clostridium difficile QCD-97b34] gi|255650797|ref|ZP_05397699.1| two-component system response regulator [Clostridium difficile QCD-37x79] gi|260683880|ref|YP_003215165.1| two-component system response regulator [Clostridium difficile CD196] gi|260687540|ref|YP_003218674.1| two-component system response regulator [Clostridium difficile R20291] gi|306520698|ref|ZP_07407045.1| two-component system response regulator [Clostridium difficile QCD-32g58] gi|115251341|emb|CAJ69173.1| Two-component response regulator [Clostridium difficile] gi|260210043|emb|CBA64112.1| two-component system response regulator [Clostridium difficile CD196] gi|260213557|emb|CBE05314.1| two-component system response regulator [Clostridium difficile R20291] Length = 230 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR +P+I IS + + G DD + KP + E++ARV + RR N Sbjct: 67 IREERNIPIILISAKSEDTDKIIGLNIGADDYITKPFNLLELIARVKSNLRRYVTLGNYE 126 Query: 127 ET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +T G + + + ++ ++ GE + E +I+E L+ N+G+ + +I+ ++ Sbjct: 127 DTCKEILKSGALELNTLTKEVKIDGENIKMTPIEYKIIELLLENKGRVFSIDEIYEKVWN 186 Query: 180 LFDEAVE-ENVVESHISKLRKKL 201 +E+ EN V HI ++R+K+ Sbjct: 187 --EESFNSENTVAVHIRRIREKI 207 >gi|90023478|ref|YP_529305.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89953078|gb|ABD83093.1| Phosphate regulon transcriptional regulatory protein phoB [Saccharophagus degradans 2-40] Length = 234 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 12/153 (7%) Query: 57 GEKVLELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G +EL R ++ S++P+I ++ + + G DD + KP RE++AR+ Sbjct: 59 GTSGIELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLK 118 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR +++ + PI+V DP + + E R+LE+ + ++ + Sbjct: 119 AVLRR---TDSMGISEPIQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVY 175 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ ++G + VEE V+ HI +LRK L Sbjct: 176 TRNQLLDHVWG-GNVYVEERTVDVHIRRLRKAL 207 >gi|52081822|ref|YP_080613.1| two-component response regulator YvrH [Bacillus licheniformis ATCC 14580] gi|52787209|ref|YP_093038.1| YvrH [Bacillus licheniformis ATCC 14580] gi|319647739|ref|ZP_08001957.1| YvrH protein [Bacillus sp. BT1B_CT2] gi|52005033|gb|AAU24975.1| two-component response regulator YvrH [Bacillus licheniformis ATCC 14580] gi|52349711|gb|AAU42345.1| YvrH [Bacillus licheniformis ATCC 14580] gi|317390080|gb|EFV70889.1| YvrH protein [Bacillus sp. BT1B_CT2] Length = 242 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 92/205 (44%), Gaps = 14/205 (6%) Query: 27 EGFNSL----EFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYP 82 EGF+ + EE L ++ V I ++ G+ ++ IR H+ P+ ++ Sbjct: 26 EGFSEVLTASSAEEALDIVKKDTVHLILLDVMMPGQTGFDVSPEIRRHTNAPIFFLTAKT 85 Query: 83 SLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGR---D 139 S L F G DD + KP + E++AR+ A +R + A + R Sbjct: 86 SDLDKLSGFAYGADDYITKPFNPLELIARIKAHLKRTYIHKEVAAASVSSAYEYERFIFH 145 Query: 140 PE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 P+ V GE + ++L+Y + + ++K QI+ ++G+ + N V HI Sbjct: 146 PDFAELIVDGETVSCSAQLLQLLQYFCDHPNRVLSKDQIYEKVWGVPSYG-DSNTVMVHI 204 Query: 195 SKLRKKL-RNKLGFDPVDSKRFLGY 218 KLR+K+ ++ + + + R LGY Sbjct: 205 RKLREKIEKDPSSPEYIVTIRGLGY 229 >gi|88856021|ref|ZP_01130683.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88814888|gb|EAR24748.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 250 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 8/183 (4%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 R DV ++ + G + + L R+ Q P++ ++ S+ + G DD V KP Sbjct: 67 RPDVVVLDIMMPGL-DGLAVLTRLRADGIQTPILFLTAKDSVDDRIAGLTVGGDDYVTKP 125 Query: 103 IHHREILARVAAIYRRLKV-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRIL 157 E++AR+ A+ RR + SN E G + + + G L E +L Sbjct: 126 FSLEELVARLRALLRRSSITIAGDSNPVIEVGDLTLDESTYEVARGGTRVELTATEFELL 185 Query: 158 EYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLG 217 YLM N + +++ QI ++ +D +VVE +IS LRKK+ + LG + + R +G Sbjct: 186 RYLMRNPRRVLSRAQILDRVWS-YDFGGRASVVEIYISYLRKKI-DVLGPPMIHTVRGVG 243 Query: 218 YSI 220 Y + Sbjct: 244 YML 246 >gi|75762301|ref|ZP_00742183.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228905558|ref|ZP_04069507.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|74490204|gb|EAO53538.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228854094|gb|EEM98803.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 214 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 12/167 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + IR Q P++ +S + G DD + KP EI+ARV A RR Sbjct: 39 QLIKKIRETLQFPILILSAKSQEVDKIIGLGIGADDFITKPFSALEIIARVQAHLRRSYE 98 Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N++A G + G E L E +IL M + G+ K QI Sbjct: 99 FNDKAVEGKEKQIHMGDLVLDHHSCTLYKSSETITLSATEYKILTLFMGDPGRIFTKKQI 158 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSK--RFLGY 218 F +++ + ++N + HIS+LR+KL + +PV K R LGY Sbjct: 159 FESVWSDY-YCADDNTIMVHISRLREKLEDSPK-NPVYIKTIRGLGY 203 >gi|186686341|ref|YP_001869537.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468793|gb|ACC84594.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 241 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 9/146 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNN 124 +R S VP+I ++ ++ + + G DD + KP +E+ AR+A I RR K S N Sbjct: 71 LRKESDVPIIMLTALGNVADRITGLELGADDYMTKPFSPKELEARIACILRRCFHKTSVN 130 Query: 125 RA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G +++ ++ R + L E +LE L+ N GK ++ ++ ++ Sbjct: 131 TTPNSTIIRVGNLKIDTNKRQVYKNEQRIRLTGVEFSLLELLVNNSGKVFSRLEMLQLLW 190 Query: 179 GLFDEA-VEENVVESHISKLRKKLRN 203 G ++ VV+ HIS+LR K+ + Sbjct: 191 GCVPGLHLDTRVVDVHISRLRTKVED 216 >gi|327439728|dbj|BAK16093.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 234 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 9/168 (5%) Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ + IR H++ VP++ ++ +++ + D G +D + KP E+LAR+ R Sbjct: 61 LEVLKRIRKHNETVPVLLLTAKSNIEDKVTGLDYGANDYITKPFEFDELLARIRVALRFS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQI 173 S + + F D E EV L RE +L + M + ++ Q+ Sbjct: 121 HKSAPEPTSSSVHTFQDLSLNEQTREVTRNALQIDLTPREFDLLLHFMKHAKLVQSREQL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +A++G +D + NVV+ ++ LR+KL L P + + R +GY + Sbjct: 181 LNAVWG-YDYYGDTNVVDVYVRYLRQKLEVNLNLPPLLHTVRGVGYVL 227 >gi|255523659|ref|ZP_05390626.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255512714|gb|EET88987.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 228 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 9/168 (5%) Query: 45 DVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 DV ++ L GK E+ + IR ++P+I +S + G DD + KP Sbjct: 47 DVVVVDLMLPGKDG--YEIVKAIRDKFEIPIIIVSAKNEDIDKIRGLGFGADDYLTKPFS 104 Query: 105 HREILARVAAI---YRRL---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 E++AR+ + Y RL KV+ + + +D V G+ L +E +L Sbjct: 105 PAELVARIRSHIMRYERLSGKKVTLEIISHKAMEIQTDSHKVFVNGKEIFLTTKEYELLV 164 Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG 206 +L +N K QIFS+I+G D + V HI KLRKK+ G Sbjct: 165 FLASNPNIVFTKDQIFSSIWGE-DYCGDTATVAVHIQKLRKKIEKDSG 211 >gi|238922448|ref|YP_002935961.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656] gi|238874120|gb|ACR73827.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656] gi|291526222|emb|CBK91809.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291526732|emb|CBK92318.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 230 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 10/143 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV--SNN 124 IR S+VP+I +S + + G DD V KP + E++ARV + RR SN+ Sbjct: 66 IRKESRVPIIILSAKTEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRRYTTLSSND 125 Query: 125 RA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 A E G + V D + V GE L E IL L+ N+GK + +I+ +I+ Sbjct: 126 AAGDKVYEAGGLLVNDDLKKVTVDGEEVKLTPIEYNILLLLLKNKGKVYSINEIYESIWN 185 Query: 180 LFDEAV-EENVVESHISKLRKKL 201 +EA+ +N V HI +R+K+ Sbjct: 186 --EEAIGADNTVAVHIRHIREKI 206 >gi|222098721|ref|YP_002532779.1| DNA-binding response regulator [Bacillus cereus Q1] gi|221242780|gb|ACM15490.1| DNA-binding response regulator [Bacillus cereus Q1] Length = 223 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%) Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R + +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 120 KTEVTVSHEVIEAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 ++G F+ V+ + +LRKKL Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKL 204 >gi|209809430|ref|YP_002264968.1| transcriptional regulator, response regulator [Aliivibrio salmonicida LFI1238] gi|208010992|emb|CAQ81404.1| transcriptional regulator, response regulator [Aliivibrio salmonicida LFI1238] Length = 201 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/215 (23%), Positives = 103/215 (47%), Gaps = 21/215 (9%) Query: 9 ALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIR 68 +L + GY + D+ + F W A D+ ++ L +G+ + LP + Sbjct: 3 SLEEAGYNCIHSDNATDVSSF-------W----AEADIVILDRQL-PEGDSLTWLPEW-K 49 Query: 69 AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNRAE 127 +P+I ++ S++ + DSG +D + KP E+LAR+ A R + + N+ + Sbjct: 50 QIKDIPVILLTALVSIRDKVTGLDSGANDYLTKPFAEAELLARLRAHLRSPESEAENKTQ 109 Query: 128 --TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 G + + + RD + L R E +L +L +N GK + ++ ++G ++ Sbjct: 110 LVVGVLSIDTSTRDVINGSDAVTLTRTEFDLLLFLASNLGKVFTRDELLDQVWG-YNHFP 168 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V++HI +LR+K+ +G + +++ R +GY + Sbjct: 169 TTRTVDTHILQLRQKI---VGIE-IETLRGVGYKM 199 >gi|23464658|ref|NP_695261.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|23325218|gb|AAN23897.1| response regulator of two-component system [Bifidobacterium longum NCC2705] Length = 240 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 36/218 (16%) Query: 32 LEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP--------RIIRAHSQVPLIGISD 80 LE E + + + + A+E F I K + +L LP R IRA S VP+I ++ Sbjct: 21 LENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDGTGVARRIRATSNVPIIMLTA 80 Query: 81 YPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---------------VSNNR 125 + ++G DD V KP E+LAR+ A +R K + N Sbjct: 81 KSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAKPAAEDGATGGASGGNANVNH 140 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 E GPI + G+ L E +L L A G+ ++++ + ++G ++ + Sbjct: 141 LERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGEAISRSSLLKNVWG-YENSG 199 Query: 186 EENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 + +V H+ +LR K+ + DP V + R +GY Sbjct: 200 DTRLVNVHVQRLRAKVED----DPENPQIVQTVRGIGY 233 >gi|332711870|ref|ZP_08431800.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332349198|gb|EGJ28808.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 230 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 13/145 (8%) Query: 65 RIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +RA Q+P++ ++ + + D+G DD + KP+ E+ AR+ A+ RR Sbjct: 64 RKLRAQGYQMPILMLTGRDTTNDKVKGLDAGADDYLVKPVDLPELFARIRALLRR----- 118 Query: 124 NRAETGPIRVFSDGR-DP---EVQGEVFPL--PRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ P+ + D R DP EV P+ R+E +LE+L+ N + + ++ I + Sbjct: 119 GQSIAPPVLKWGDLRLDPSTYEVSYAHQPIHFTRKEYSLLEFLLRNGRRVLTRSVIIEHV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLR 202 + F+ EE V ++I LR+KLR Sbjct: 179 WS-FENPPEEETVNAYIKSLRRKLR 202 >gi|330899210|gb|EGH30629.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 249 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE L L R +R+ S +P++ ++ + + G DD + KP RE++AR+ Sbjct: 71 LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 130 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165 I RR V + R++ F R V G V PL E R+L + Sbjct: 131 QTILRR--VRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 188 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 + +++ Q+ A G EA + + I L +LR KLG DP Sbjct: 189 RVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 227 >gi|312130452|ref|YP_003997792.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] gi|311906998|gb|ADQ17439.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] Length = 222 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 16/207 (7%) Query: 13 DGYIALFGDDGVSLEGF-NSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---------- 61 +G I + DD LE +LE E++ SA + AIE + + +L Sbjct: 2 NGKILVVDDDEDILELLIYNLEKEQYQVRSAENGLKAIEVAKEFQPDIILMDIMMPLLDG 61 Query: 62 -ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 E +II+ Q LI ++ + + F+ G DD + KPI R +L+R+ A +R+ Sbjct: 62 IEAGKIIKTEQPQTHLIYLTARAEEYSEVAAFEVGADDYITKPIKPRALLSRIQAYFRKE 121 Query: 120 KVS-NNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K N E + + + G V LP++E IL +L ++ K ++ + I Sbjct: 122 KSQEKNVLEISGLVINKQNYSVTTEDGSVKVLPKKEFEILYFLASHPNKVQSRDSLLQKI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK 204 +G D V E ++ HI K+R+K+ +K Sbjct: 182 WGT-DIYVVERTIDVHIRKVREKIGDK 207 >gi|312868310|ref|ZP_07728510.1| response regulator receiver domain protein [Streptococcus parasanguinis F0405] gi|311096055|gb|EFQ54299.1| response regulator receiver domain protein [Streptococcus parasanguinis F0405] Length = 241 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 24/212 (11%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVL 61 +LI+D +++ +L G++ L+ F+ E Q A D+ ++ L GK G++VL Sbjct: 17 LLIEDNNDIQEILYSLLGEEHEVLQAFSGTEGLRVFQQEAI-DLVLLDIMLPGKNGDQVL 75 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR QVP+I ++ + +G +D + KP + E+ ARV +L+ Sbjct: 76 EE---IRLQGQVPVIMMTALGDKHLISQYLLAGANDYIVKPFNLDEVAARVTV---QLRN 129 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP---------RRERRILEYLMANRGKRVAKTQ 172 +N A+ P ++ + E F L ++E +I E L+A+ K K + Sbjct: 130 NNTPAQEPPSSKKLTFKNLVLNPETFELESGEQTLRLGKKEFQIFETLLAHPKKIFTKEE 189 Query: 173 IFSAIYGLFDEAVE---ENVVESHISKLRKKL 201 ++ A++ E V +N + + +S LRKK+ Sbjct: 190 LYEAVW----EEVYLPGDNTLNAQLSNLRKKI 217 >gi|228997776|ref|ZP_04157380.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock3-17] gi|229005316|ref|ZP_04163031.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228755955|gb|EEM05285.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228761908|gb|EEM10850.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock3-17] Length = 215 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/158 (22%), Positives = 79/158 (50%), Gaps = 15/158 (9%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---LKVSN 123 I+ +S V ++ ++ + L SG D+ V KP H +L R + + ++V N Sbjct: 66 IKKNSSVKVLMLTAKSENEDELAALQSGADEYVKKPFHPGILLTRAKKLLNQDEVIQVQN 125 Query: 124 NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + +V+ ++ E+ + E +++ + ++G + + ++ ++G FD Sbjct: 126 LKIDLIKNKVYKSDKELEI-------TKTELELIKCFLNHKGTILTREKLLDIVWG-FDY 177 Query: 184 AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V++H+ +LRKK+ G D + + R LGYS++ Sbjct: 178 FGDERTVDTHVRRLRKKI----GEDIIKTHRGLGYSLE 211 >gi|229162132|ref|ZP_04290103.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228621339|gb|EEK78194.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 223 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/156 (23%), Positives = 75/156 (48%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 IR + +P+I ++ L F +G DD + KP E++ R+ A+ RR ++ S + Sbjct: 67 IRKYHDIPVILLTAKDQLVDKEKGFIAGTDDYIVKPFEPAEVIFRMKALLRRYQMLSADI 126 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + G+ LP +E +L L + G+ ++ ++ ++G+ D Sbjct: 127 ITLHGTTIDRKGIEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM-DFEG 185 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR + + + + R LGY ++ Sbjct: 186 DERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221 >gi|192293211|ref|YP_001993816.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|192286960|gb|ACF03341.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] Length = 240 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 12/150 (8%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE +L R IR S VP++ ++ ++ ++ G DD V KP RE+L R+ I Sbjct: 74 GETGFDLARSIRETSDVPIVMLTARHEAESRIEGLQIGADDYVAKPFEPRELLLRIGNIL 133 Query: 117 RRLK-VSNNRAET---GPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKT 171 +R +AET GP VF R QG E+ L RER +L L A G+ V + Sbjct: 134 KRTAPAPAAKAETVAFGPY-VFHIERGELRQGDEIVHLTDRERDMLRMLAAAPGETVPRG 192 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + A E V+ I++LR+K+ Sbjct: 193 DLSGA------GNANERAVDVQINRLRRKI 216 >gi|21224124|ref|NP_629903.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|256784797|ref|ZP_05523228.1| two-component system regulator [Streptomyces lividans TK24] gi|289768685|ref|ZP_06528063.1| two-component system regulator [Streptomyces lividans TK24] gi|2687343|emb|CAA15884.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|289698884|gb|EFD66313.1| two-component system regulator [Streptomyces lividans TK24] Length = 228 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 10/160 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 IR + P+I ++ +++ + + G DD V KP E+LAR+ A+ RR + Sbjct: 68 IRKRTSTPVIMVTARADVRSRIHGLNLGADDYVVKPYDTGELLARIHAVSRRTAHEDATG 127 Query: 127 ET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T G +R+ R V G V L R+E +L L G + QI S ++ Sbjct: 128 STETVVRLGAVRIELPTRQVSVDGSVVQLTRKEFDLLALLAQRPGVVFRREQIISEVWRT 187 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E +E H++ LR KL + V R +GY + Sbjct: 188 SWEGTGRT-LEVHVASLRSKLHMPALIETV---RGVGYRL 223 >gi|261252656|ref|ZP_05945229.1| transcriptional regulator [Vibrio orientalis CIP 102891] gi|260936047|gb|EEX92036.1| transcriptional regulator [Vibrio orientalis CIP 102891] Length = 216 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 19/206 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI------G 55 +LI+D L+ G ++ F +G + L W Q S+ + + A L+ Sbjct: 4 LLLIEDDPLLGQGLVSFFESNG-----YQCL----WAQDSSNANKLWLRADLVVLDRQLE 54 Query: 56 KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 G+ + LP + + +P+I ++ +Q ++ +G D V KP + E+LARV Sbjct: 55 DGDSLQHLPNWLLLKA-LPVIVLTAKVEVQQRVEGLMAGAKDYVTKPFSNEELLARVITQ 113 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R L VS+ I++ R ++ L +E ++L + N+G+ + ++ + Sbjct: 114 LRPLGVSH--LNYANIQINLSERIAYLEESPIALKPKEFQLLVLFIQNQGRVFHRDELLN 171 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 I+G + V++HI +LR+KL Sbjct: 172 KIWG-YQAFPSTRTVDNHILRLRQKL 196 >gi|227113940|ref|ZP_03827596.1| two-component system response regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 220 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 93/204 (45%), Gaps = 11/204 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D L+ DG A G+ GFN F E +A + +A ++ ++ Sbjct: 4 LLIEDDRLIGDGLKA-----GLIKLGFNIDWFTEGKAGAAALKAAPYDAVVLDLSLPGMD 58 Query: 63 LPRIIRAHSQV----PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 I+R Q P++ ++ +L+ ++ G DD + KP E+ AR+ A+ RR Sbjct: 59 GMDILRQWRQAGHDEPVLILTARDALEQRVEGLQQGADDYLCKPFALTEVAARLQALIRR 118 Query: 119 LKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 A T G + + R + E L RE +LE + N + + + Q+ + Sbjct: 119 RHGQLQPALTHGAVSLEPGSRSVTLNSEPLILKSRELALLELFLLNPSRVLTRAQLEEKL 178 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 YG +D+ V N VE HI LRKKL Sbjct: 179 YG-WDDDVSSNAVEVHIHHLRKKL 201 >gi|227547950|ref|ZP_03977999.1| response regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227079961|gb|EEI17924.1| response regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 235 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 6/113 (5%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR-----VFSDGRDPEVQGEVFP 148 G DD V KP E++ R+ I RR V+ + +R + D + GE+ Sbjct: 101 GADDYVTKPFSLEEVITRLRVILRRGNVTADADSDSTLRYADLTLNDDTHEVTKSGEIID 160 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 L E +L YLM N ++K +I ++ +D + NVVES+IS LR+K+ Sbjct: 161 LSPTEFNLLRYLMLNAEVVLSKAKILDNVWH-YDFGGDGNVVESYISYLRRKV 212 >gi|168178171|ref|ZP_02612835.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182671139|gb|EDT83113.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 230 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 6/145 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 EL IR +P+I IS ++ G DD + KP E+ AR+ + RR K Sbjct: 65 ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124 Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + I + D R+ + + L RE IL+ LM K K+ +F + Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKL 201 ++ ++N + HIS LR KL Sbjct: 185 VWS-SKYLCDDNTINVHISNLRNKL 208 >gi|75760587|ref|ZP_00740619.1| Two-component response regulator ycbL [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903054|ref|ZP_04067192.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 4222] gi|228967633|ref|ZP_04128655.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar sotto str. T04001] gi|74491922|gb|EAO55106.1| Two-component response regulator ycbL [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228792069|gb|EEM39649.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar sotto str. T04001] gi|228856589|gb|EEN01111.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 4222] Length = 241 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 7/149 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 LE+ RIIR S VP++ +S + G DD + KP E+ ARV A I R Sbjct: 73 LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 132 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K S I++ DP E G L +E IL+ + N+ + K QI+ Sbjct: 133 KYSATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIY 192 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++ + ++NV+ H+ +LR+K+ + Sbjct: 193 TLVWNE-EYYGDDNVINVHMRRLREKIES 220 >gi|320457990|dbj|BAJ68611.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 245 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 3/126 (2%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRR 152 G DD + KP E+ ARV A RR + + + T I++ ++ V PL + Sbjct: 117 GADDYLTKPFRIAELRARVHAHLRREQRERHVSLTFDRIKIDLSAKELLVDNIPVPLTKS 176 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E I EYL NRG+ +K QI+ A++ + + + + +HI +R K + G P+ + Sbjct: 177 EYLICEYLAGNRGQVFSKKQIYEAVFPFYGYG-DGSTISTHIKNIRSKF-EEAGVQPIVT 234 Query: 213 KRFLGY 218 +GY Sbjct: 235 VWGIGY 240 >gi|302384795|ref|YP_003820617.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302195423|gb|ADL02994.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 236 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/162 (24%), Positives = 78/162 (48%), Gaps = 22/162 (13%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R+ SQVP+I +S + + + G DD + KP +E++ARV A+ RR + Sbjct: 65 QVCREMRSASQVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQT 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQ----------------GEVFPLPRRERRILEYLMANRG 165 S P + +D + V+ G +P +E +L +L ++ Sbjct: 125 S-----PVPAALHTDHQGEYVEYPDLIVNLTNYSVIYMGHSIEMPPKELELLYFLASSPN 179 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 + + Q+ I+G ++ + V+ HI +LR+K+++ G+ Sbjct: 180 QVFTREQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDHAGW 220 >gi|295113087|emb|CBL31724.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterococcus sp. 7L76] Length = 236 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 11/118 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----------ETGPIRVFSDGRDPEVQ 143 G DD + KP RE+LAR+ AI+RRLK + G IRV + V+ Sbjct: 95 GADDYLTKPFSPREVLARMKAIFRRLKPTTTETLQEDTPKAPLVIGEIRVDEQNYEVFVR 154 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + L +E +L Y M + + + + + I+ +D A + +V+ HIS LR K+ Sbjct: 155 NQPIELTPKEFELLVYFMKRKDRVINRENLLERIWQ-YDFAGQSRIVDVHISHLRDKI 211 >gi|326202141|ref|ZP_08192011.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987936|gb|EGD48762.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 233 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 11/150 (7%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR +S VP+I ++ S + D G DD V KP R++LARVAA+ RR+ V Sbjct: 66 EICKRIRKNSSVPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPRQLLARVAAVLRRV-V 124 Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+TG I +F +G + G + E RIL + K + ++ Sbjct: 125 KEPVADTGKI-IFDNGDLVIDTFVHEIRKAGNTINVTPNEYRILVTMAGFPKKTFTRDEL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN 203 + G E + V++HI LR+K+ + Sbjct: 184 INMALGDDFEGFDRT-VDTHIKNLRQKIED 212 >gi|255263392|ref|ZP_05342734.1| transcriptional regulatory protein TctD [Thalassiobium sp. R2A62] gi|255105727|gb|EET48401.1| transcriptional regulatory protein TctD [Thalassiobium sp. R2A62] Length = 221 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 F+LI+D + + DG ++ LE + D+ ++ L G G Sbjct: 3 FLLIEDNEALAGAVVDRLALDGHVVDHAGDLETASDFTHTTDYDLILLDIMLPDGDGRSF 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 L R A S+ P+I ++ + + D G DD + KPI E+ AR A+ RR Sbjct: 63 LAQQR--EAKSRTPIIVLTARSEVSDRVGMLDLGADDYMVKPIDFSELEARCRAVLRRQG 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N G + S ++ G+ L RE R+ E + + +K ++ ++ Sbjct: 121 GAARNIISFGELEFDSLAGTLKIGGDETKLRTRELRLFEIFVNAPNQVFSKPKLVDRLFS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 +DE EN +E ++ +LR+ L D + + R LGY ++ Sbjct: 181 -YDEEASENAIEVYVGRLRRHLDTS---DVSITTVRGLGYKLEL 220 >gi|253579598|ref|ZP_04856867.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849099|gb|EES77060.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 233 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 12/172 (6%) Query: 40 SSAREDVSAIEAFLIG-KGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98 +S R D+ ++ L G G +V R IR S VP+I +S + + G DD Sbjct: 45 ASFRPDLIILDLMLPGIDGYQVC---REIRHTSDVPIIMLSAKGETFDKVLGLELGADDY 101 Query: 99 VNKPIHHREILARVAAIYRRLKV------SNNRAETGP-IRVFSDGRDPEVQGEVFPLPR 151 + KP +E++ARV A+ RR +V S+ + T P + V G +P Sbjct: 102 MIKPFDSKELVARVRAVLRRFQVKQPSPSSSEKCVTYPDLTVNLTNYAVTYMGRQVDMPP 161 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 +E +L +L A+ + + Q+ I+G ++ + V+ HI +LR+K+++ Sbjct: 162 KELELLYFLAASPNQVFTREQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKD 212 >gi|225573201|ref|ZP_03781956.1| hypothetical protein RUMHYD_01392 [Blautia hydrogenotrophica DSM 10507] gi|225039466|gb|EEG49712.1| hypothetical protein RUMHYD_01392 [Blautia hydrogenotrophica DSM 10507] Length = 223 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 73/168 (43%), Gaps = 20/168 (11%) Query: 58 EKVLELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 E+V++LP II R SQ + G F SG DD V KP + +R+ A Sbjct: 69 ERVVDLPIIILTVRGDSQDVVAG-------------FQSGADDYVVKPFELTVLYSRMLA 115 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQI 173 + RR++ + V R +G+ L + E +L LM N+GK + +TQ+ Sbjct: 116 LLRRVQKAEETKLFCDDLVLDKERLTVSRGQKEIVLSQSEYHLLLLLMENKGKTITRTQL 175 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+ V N + + +LR+KL N V R GY ++ Sbjct: 176 LEQIWDNHGHFVNNNTLTVTVKRLREKLCNPTCLKTV---RSFGYRME 220 >gi|261418666|ref|YP_003252348.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319765481|ref|YP_004130982.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261375123|gb|ACX77866.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317110347|gb|ADU92839.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 223 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 12/166 (7%) Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ R +R + ++ ++ ++Q + ++G DD + KP E++AR+ A+ RR Sbjct: 61 LDICRRLRQNGYTGAILMLTAKDAVQDRVTGLEAGADDYLVKPFEIDELVARLKALARRT 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 V + E F+ R E+F P RE ++L+ L+ N+G+ V + I Sbjct: 121 FVP-LQEEKVAFHGFTLNRTSHTLHRGDEEIFLTP-REFQLLDLLVQNQGQVVPRETILD 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G +D V +++ I LRKKL++ D + + R +GY ID Sbjct: 179 RVWG-WDADVSMKTIDATIKLLRKKLKD----DVIQTVRGVGYKID 219 >gi|254514188|ref|ZP_05126249.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium NOR5-3] gi|219676431|gb|EED32796.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium NOR5-3] Length = 236 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 82/164 (50%), Gaps = 6/164 (3%) Query: 43 REDVSAIEAFLIGKGEKVLELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVN 100 R D+ ++ L G G + L R+ R + ++P+I ++ + + + G DD + Sbjct: 47 RPDIVLLDWMLPG-GSGIELLRRLKRDETTREIPVIMLTAKTAEDNVIQGLEVGADDYMT 105 Query: 101 KPIHHREILARVAAIYRRLKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILE 158 KP RE++AR+ A+ RR V S +R + + + R + + + E +L+ Sbjct: 106 KPFAPRELIARIKALLRRSGVGESTDRMQVSELVLDGKSRRVFLAEQPLDMGPTEFNLLQ 165 Query: 159 YLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 + M++ + ++ Q+ ++G + VEE V+ HI +LRK L+ Sbjct: 166 FFMSHPERAYSRNQMLDQVWGA-NVYVEERTVDVHIRRLRKALQ 208 >gi|206977475|ref|ZP_03238370.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217959463|ref|YP_002338015.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229138688|ref|ZP_04267270.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|206744325|gb|EDZ55737.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217066890|gb|ACJ81140.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228644807|gb|EEL01057.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] Length = 225 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ ++ + F G DD + KP E++ RV A+ +R +++ +++ Sbjct: 68 LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 127 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + + + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 128 IQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKTGRTCSREQLIEDVWG-YDFEG 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + + + + R LGY ++ Sbjct: 187 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 222 >gi|220931316|ref|YP_002508224.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] gi|219992626|gb|ACL69229.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] Length = 237 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 21/157 (13%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR + +P+I ++ S + G DD + KP E++ARV A RR Sbjct: 64 VEVCRTIREITNIPIIMLTARDSEVDKVLGLRIGADDYITKPFLPGELIARVKAQLRRFF 123 Query: 121 V--------SNNRAETGPIRVFSDG-----RDPEVQGEVFPLPRRERRILEYLMANRGKR 167 V S + G +++ DG R+ EVQ L E +IL L GK Sbjct: 124 VLGSEGDARSRKMVKFGDLKIDFDGYRVYKRNKEVQ-----LTSTEFKILLLLAREPGKV 178 Query: 168 VAKTQIFSAIYGLFDEAVE-ENVVESHISKLRKKLRN 203 K QIF+ ++G D+ +E +N V HI +LR K+ + Sbjct: 179 FTKKQIFNKVWG--DDYLEADNNVMVHIRRLRTKIED 213 >gi|332530299|ref|ZP_08406245.1| two component transcriptional regulator, winged helix family protein [Hylemonella gracilis ATCC 19624] gi|332040285|gb|EGI76665.1| two component transcriptional regulator, winged helix family protein [Hylemonella gracilis ATCC 19624] Length = 239 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 8/152 (5%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNRAETGPI 131 VP++ ++ S+ + + G DD + KP E+ AR+ A+ RR ++ + R GP+ Sbjct: 79 VPVMILTARASVPDRVLGLNLGADDYLPKPFDLSELEARLQALLRRPGRMKSLRLRLGPL 138 Query: 132 RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVE 191 + + + +V L RE L L+ + G+ V K + A++ DEA E VE Sbjct: 139 EMDRESGQVTLNQQVLALTPRETAALRVLLEHPGRAVGKEALHRAVFS--DEAAELEAVE 196 Query: 192 SHISKLRKKLRNKL-----GFDPVDSKRFLGY 218 I +LRKKL V + R LGY Sbjct: 197 VLIHRLRKKLDTACRPPEPAAPTVSTIRGLGY 228 >gi|330965404|gb|EGH65664.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas syringae pv. actinidiae str. M302091] Length = 230 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 11/153 (7%) Query: 68 RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE 127 R S VP++ +S S + D+G +D V KP +E LARV A+ R++ S+ Sbjct: 71 REWSAVPVLVLSVRASEVQKVQALDAGANDYVTKPFGIQEFLARVRALLRQVSGSDKPES 130 Query: 128 T---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 GP+ V R + G+ L R+E +L L + G+ + + Q+ I+G Sbjct: 131 ALRFGPLTVDLAYRRVLLDGQEVALTRKEYSVLAQLARHPGRVITQQQLLKDIWG----- 185 Query: 185 VEENVVESHISKL-RKKLRNKLGFDPVDSKRFL 216 + +SH ++ LR KLG DP + RF+ Sbjct: 186 -PTHTEDSHYLRIVVGHLRQKLGDDPT-APRFI 216 >gi|325679755|ref|ZP_08159329.1| transcriptional regulatory protein ResD [Ruminococcus albus 8] gi|324108570|gb|EGC02812.1| transcriptional regulatory protein ResD [Ruminococcus albus 8] Length = 224 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/143 (25%), Positives = 72/143 (50%), Gaps = 8/143 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 I+ ++P+I +S L F+ G+DD + KP +E++AR+ A+ R K S Sbjct: 67 IQKIKKIPVIMLSARGEEYDKLFGFEIGIDDYMVKPFSPKELMARIRAVLNRAKASQKTE 126 Query: 127 ET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 + + + R+ ++ GE + +E +L YL+ N +++ ++ ++G FD Sbjct: 127 DIIRYQGLEINFTAREVKIDGEKVSMTPKEYDLLFYLVRNMNIALSREKLLEEVWG-FDF 185 Query: 184 AVEENVVESHISKLRKKLRNKLG 206 ++ +++HI K LRN LG Sbjct: 186 YGDDRTIDTHI----KMLRNSLG 204 >gi|260549439|ref|ZP_05823658.1| two-component system response regulator protein [Acinetobacter sp. RUH2624] gi|260407548|gb|EEX01022.1| two-component system response regulator protein [Acinetobacter sp. RUH2624] Length = 231 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 6/139 (4%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--KVSNNRAETGP 130 +P++ ++ +L L F +G DD + KP E++ R+ A+ +R +V+N++ + Sbjct: 77 MPILMLTARDTLDDKLKGFTAGTDDYLVKPFDFNELVMRIRALIKRAAGEVANHKIQIHD 136 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + + S + G LP + ++L+ LM K V K ++ ++G DE E + + Sbjct: 137 LILDSATQTVIRAGNNIELPPIQFKLLKILMRQSPKVVTKQELMMELWG--DEEPESDAL 194 Query: 191 ESHISKLRKKLRNKLGFDP 209 SHI LRK + FDP Sbjct: 195 RSHIYNLRKMIDKP--FDP 211 >gi|227508143|ref|ZP_03938192.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227511166|ref|ZP_03941215.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227523372|ref|ZP_03953421.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227085648|gb|EEI20960.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227089478|gb|EEI24790.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227192372|gb|EEI72439.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 238 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 21/203 (10%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L K+GY DG EE L+ D I L+ LE+ R +R Sbjct: 22 LTKEGYEVFVAYDG-----------EEALKQVNEVDPDLIILDLMLPKIDGLEVAREVRK 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS------- 122 P+I ++ S + + G DD V KP +RE++ARV A RR S Sbjct: 71 TKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGTSSGNSSEG 130 Query: 123 --NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + G + + + +GE L RE +L YL + G+ + + + ++G Sbjct: 131 DENKDIKIGDLVIHPEAYSVSKRGENIELTHREFELLHYLAQHIGQVMTREHLLQTVWG- 189 Query: 181 FDEAVEENVVESHISKLRKKLRN 203 +D + V+ + +LR+K+ + Sbjct: 190 YDYFGDVRTVDVTVRRLREKVED 212 >gi|225851211|ref|YP_002731445.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Persephonella marina EX-H1] gi|225646536|gb|ACO04722.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Persephonella marina EX-H1] Length = 228 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 76/149 (51%), Gaps = 11/149 (7%) Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE +++++ ++P+I ++ + + + G DD V KP RE++AR+ A+ + Sbjct: 61 LEFCKLLKSDKDTEEIPIIMLTAKSTEIDKIVGLELGADDYVTKPFSIRELIARIKAVLK 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R K S + + IR+ DP + G+ L +E ++L L+ GK + + Q Sbjct: 121 RSKRSFKKDKI--IRIKDLEIDPLKIEVRIDGKNIDLTAKEFKLLLLLINAEGKVLTRDQ 178 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL 201 I S+++ D V + ++ HI KLR KL Sbjct: 179 ILSSVWE-NDLDVFDRTIDVHIKKLRDKL 206 >gi|222095607|ref|YP_002529664.1| response regulator [Bacillus cereus Q1] gi|221239665|gb|ACM12375.1| response regulator [Bacillus cereus Q1] Length = 234 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/156 (21%), Positives = 79/156 (50%), Gaps = 2/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + +P++ ++ + F G DD + KP E++ RV A+ +R +++ +++ Sbjct: 77 LRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQS 136 Query: 127 -ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + G + + + + + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 137 IQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKTGRTCSREQLIEDVWG-YDFEG 195 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E ++ HI++LR+K + + + + R LGY ++ Sbjct: 196 NERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLE 231 >gi|182418119|ref|ZP_02949419.1| KDP operon transcriptional regulatory protein KdpE [Clostridium butyricum 5521] gi|237666207|ref|ZP_04526194.1| KDP operon transcriptional regulatory protein KdpE [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377937|gb|EDT75477.1| KDP operon transcriptional regulatory protein KdpE [Clostridium butyricum 5521] gi|237658297|gb|EEP55850.1| KDP operon transcriptional regulatory protein KdpE [Clostridium butyricum E4 str. BoNT E BL5262] Length = 230 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 6/146 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR S+ P+I +S + DSG DD V KP H E+LAR+ + R++ Sbjct: 63 IEIIKSIREISECPIIVVSARGQEIDKISALDSGADDYVTKPFHMGELLARIRVVERKMN 122 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 V + + + + + R V L E ++L ++AN+GK + I Sbjct: 123 RDKVPVKDELFKCDYLTIDYEKRKVLVDDNEIHLTPIEYKLLTLMVANKGKVLTHNYILK 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL 201 ++G + E + + ++ LR+K+ Sbjct: 183 EVWG-YGENGDSKSIRVFMASLRRKI 207 >gi|153954268|ref|YP_001395033.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347149|gb|EDK33685.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 231 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/164 (22%), Positives = 80/164 (48%), Gaps = 4/164 (2%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R SQVP+I ++ + D G DD + KP +E ++R+ AI RR + Sbjct: 62 DVCKYVRKKSQVPVIFLTACDEEVNVVLGLDIGADDYITKPFRVKEFVSRIKAILRRTES 121 Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +N + + I + ++ + +G L +E ++L M N + +++ +I + Sbjct: 122 NNYKPKIFRCKDIVLNAETLEAYKKGHDLALSMQEYKLLLLFMNNAQRVMSREEILDNLT 181 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 E + N + +I ++R+K+ ++ + + +KR GY D Sbjct: 182 DGSGEYFDTNTLSVYIKRIREKIEQDSSNPEYIKTKRGFGYQWD 225 >gi|115377125|ref|ZP_01464339.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1] gi|310822859|ref|YP_003955217.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca DW4/3-1] gi|115365834|gb|EAU64855.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1] gi|309395931|gb|ADO73390.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca DW4/3-1] Length = 226 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 6/151 (3%) Query: 74 PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS---NNRAETGP 130 P++ +S + + G DD V KP RE++ RV A+ RR + + G Sbjct: 77 PVVIVSAKGQEADRIQGLEMGADDYVVKPFSVRELMLRVKAVLRRADADEGPSTQLTAGE 136 Query: 131 IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 I++ + V+GE L E R+L L+ G+ + + S ++G+ E + V Sbjct: 137 IQLDTSRHQVRVKGEEVVLTALEFRLLHTLLERGGRVQTREVLLSDVWGIQAE-IHTRTV 195 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++HI +LR+KL D +++ R +GY ++ Sbjct: 196 DTHIKRLREKLGP--AGDIIETVRGVGYKLN 224 >gi|113867441|ref|YP_725930.1| response regulator [Ralstonia eutropha H16] gi|113526217|emb|CAJ92562.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 223 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 6/151 (3%) Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-VSNNRAETG 129 S++P+I ++ ++ + + D+G DD + KPI E+ AR+ A+ RR +S+ + G Sbjct: 71 SRIPVIVLTARDAIDSRIGGLDAGADDYLVKPIALDELAARLRAVTRRAAGLSSPVWKHG 130 Query: 130 PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENV 189 + R QG+ L RE +LE L+A+ + + + + +Y + VE N Sbjct: 131 ALEFHPAARQAYWQGKPLELTSREAMLLELLLAHPNRLLTRDFLRDKLYD-WQGGVESNA 189 Query: 190 VESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E HI LR+K+ K+ V + R GY++ Sbjct: 190 LEVHIHHLRRKIHPKI----VRTFRGAGYTL 216 >gi|1653495|dbj|BAA18408.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 234 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 71/143 (49%), Gaps = 8/143 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR+ Sbjct: 62 LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGMPG 121 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ + IR+ ++ R E L E +LE L++ G+ ++++I ++G Sbjct: 122 IPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEVWG 181 Query: 180 LFDE-AVEENVVESHISKLRKKL 201 E V+ VV+ HIS+LR KL Sbjct: 182 YTPERHVDTRVVDVHISRLRAKL 204 >gi|88807098|ref|ZP_01122610.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] gi|88788312|gb|EAR19467.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] Length = 248 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 14/159 (8%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR++ N Sbjct: 74 LRKESDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRVEKENAAG 133 Query: 127 --ETGPIRVFSDGRDPEVQGEVFPLPRRER------RILEYLMANRGKRVAKTQIFSAIY 178 +G I+V SD + + +VF R R +LE L++ G+ ++ +I ++ Sbjct: 134 IPNSGMIKV-SDLKIDTNKRQVFRADERIRLTGMEFSLLELLVSRSGEPFSRGEILKEVW 192 Query: 179 GLFDE-AVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 G E V+ VV+ HIS+LR KL + DP + + L Sbjct: 193 GYTPERHVDTRVVDVHISRLRSKLED----DPANPELIL 227 >gi|313636362|gb|EFS02144.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria seeligeri FSL S4-171] Length = 240 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 12/119 (10%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLK-----VSNNRAET------GPIRVFSDGRDPEV 142 G DD + KP RE++AR+ AI RR + + N E G +++ + + + Sbjct: 99 GADDYMTKPFSPREVVARIKAILRRTEGKAEVIEENTEEVEATILIGDLKILPESYEVYL 158 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ L +E +L +L +RGK ++ Q+ ++ +D E +V+ H+S LR K+ Sbjct: 159 HDDLLDLTPKEFELLLFLANHRGKVFSRDQLLDTVWN-YDYVGETRIVDVHVSHLRDKI 216 >gi|298291963|ref|YP_003693902.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296928474|gb|ADH89283.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 239 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 18/160 (11%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 GE L L R +R S VP+I ++ + + G DD + KP + RE+LAR+ A+ Sbjct: 60 GEDGLSLCRYLRESSTVPVIMLTAMTEETDRIVGLELGADDYLAKPFNPRELLARIKAVL 119 Query: 117 RR----------LKVSNNRAETGPIRVFSDGRDPEVQGE---VFPLPRRERRILEYLMAN 163 RR LK R E + V GR E+ GE PL E R+L + + Sbjct: 120 RRVQSLPPQRGQLKAKEVRFERWSLNV---GRR-ELTGEDGMAVPLSTAEFRLLSVFLDH 175 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 G +++ Q+ G E + +++ +S+LRKK+ + Sbjct: 176 AGLVLSRDQLLDLTVGRSAEPF-DRAIDNQVSRLRKKIES 214 >gi|295699991|ref|YP_003607884.1| transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439204|gb|ADG18373.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 235 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 12/163 (7%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +L R++ A VP++ +S+ S ++ + G D+ + P+ E ARVAA+ Sbjct: 59 GADLLRSVRLV-AGEHVPIMFVSNDRSEESMVRALAGGADEYLALPLRDAEFRARVAALL 117 Query: 117 RR---LKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR ++ S E GP R + R ++GE PL + RI L +N + +++ Sbjct: 118 RRAYPVRFSAATCFEIGPYRFDTVRRAVTLRGEPVPLSPTQYRIAVLLFSNIDRVMSRDH 177 Query: 173 IFSAIYGLFDEAVE-ENVVESHISKLRKKL----RNKLGFDPV 210 IF+ ++G E E ++SH+S+LR L RN PV Sbjct: 178 IFATVWG--REMREYTRTIDSHVSRLRLLLAIEPRNGFRLQPV 218 >gi|268611433|ref|ZP_06145160.1| two component transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 243 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 24/218 (11%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV-L 61 ++IDD A + + F +S S E E + + ++ I G++ Sbjct: 6 LMIDDDATIAETTAEYFNMFDISTASVGSYEEAEAFLEKHQVSLLLLD---INLGDRSGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 EL + IR +P++ IS S L + G DD + KP +LA+V A+ R Sbjct: 63 ELCKQIRRKYDMPILFISARTSDDDILTALNIGGDDYIKKPYTMSILLAKVKAVLTRYEK 122 Query: 120 ----------KVSNNRAETGPIRV-----FSDGRDPEV-QGEVFPLPRRERRILEYLMAN 163 KV +++ TG I+V + G + + E PL E ++L YL+ N Sbjct: 123 AAEAAKTASAKVVSDQPMTGQIKVSEGILLNTGTHLLIRENETIPLKAMEYKMLLYLLEN 182 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 RG+ V K + S ++ D + E + HI +R+K+ Sbjct: 183 RGRVVTKEEFLSNVWE--DSFIGEGTLPVHIRHIREKI 218 >gi|225387739|ref|ZP_03757503.1| hypothetical protein CLOSTASPAR_01509 [Clostridium asparagiforme DSM 15981] gi|225046157|gb|EEG56403.1| hypothetical protein CLOSTASPAR_01509 [Clostridium asparagiforme DSM 15981] Length = 231 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 21/204 (10%) Query: 7 DRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE--DVSAIEAFLIG-KGEKVLEL 63 D L K GY F DG E + ++ RE D ++ L G +V L Sbjct: 18 DMNLRKKGYATAFAYDGT-----------EAVLTARRERPDCILLDVMLPKISGIEVCHL 66 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS- 122 + +A +P+I ++ + FD+G DD + KP RE+ AR+ RR + S Sbjct: 67 LKADQATGHIPVIMLTAKGEEDDKVTGFDAGADDYITKPFGWRELFARIEVALRRSQPSA 126 Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +N + ++ D E G L E IL L +RG V + ++ A+ Sbjct: 127 PQSQEDNALRVKDLAIYPDKYVVEQDGRRVDLTPTEFGILRVLAEHRGNIVTRNELNEAL 186 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 G+ + E ++ H+ LRKKL Sbjct: 187 -GITNNGGEIRSLDVHMRNLRKKL 209 >gi|168216104|ref|ZP_02641729.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182381612|gb|EDT79091.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 226 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 19/171 (11%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRR- 118 LE+ R IR S+VP+I ++ ++ + D+G DD + KP E+LAR+ A+ +R Sbjct: 61 LEVLRRIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRV 120 Query: 119 --LKVSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 +K + G + +V D D E++ L RE +L+ LM N+ + Sbjct: 121 FTVKKDEDVIRCGLLTLDKMRHKVMYD--DTEIE-----LTNREFTLLQILMENKNIVLT 173 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + + G ++ E NV++ ++ LR K+ + + + R +GY I Sbjct: 174 RDVLIEKVCG-YNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVI 223 >gi|91228118|ref|ZP_01262160.1| putative transcriptional regulator CpxR [Vibrio alginolyticus 12G01] gi|91188236|gb|EAS74536.1| putative transcriptional regulator CpxR [Vibrio alginolyticus 12G01] Length = 221 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 9/161 (5%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ R + P++ ++ + LD + +G D + KP + E+L R+ AI RR+ Sbjct: 61 MQVARRVCQRFATPILMLTALNDENSMLDGYQAGADQYIGKPFNVAELLMRIKAILRRVG 120 Query: 121 VSNNRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R ++ SD Q PL E +L YL+ N+G ++K ++ + + Sbjct: 121 LERQRQTMCSTVQTISD------QLNSLPLTSTEAELLSYLVKNQGVVISKAELQTEVLK 174 Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219 + N ++ HIS +R+KL L + + R GYS Sbjct: 175 KELSPFDRN-LDMHISNIRRKLVEAGLSKQHIKTFRGKGYS 214 >gi|42781676|ref|NP_978923.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737599|gb|AAS41531.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 235 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/228 (21%), Positives = 105/228 (46%), Gaps = 36/228 (15%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL---ELP------- 64 Y+A +G +G+ + F+++ + FL + E VL LP Sbjct: 20 YVAKYGYEGIIVSDFHNV----------------LNIFLEEQPELVLLDINLPSFDGYYW 63 Query: 65 -RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---- 119 R IR S P++ IS + ++G DD ++KP H+ ++A++ + RR Sbjct: 64 CRQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAYGDY 123 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 KV E + ++ + +++ + + R E +LE LM N + V++ + + + Sbjct: 124 APKVEERMVEQQGLCLYPERLVLKLKNQEIDITRNEAILLEMLMKNYPRVVSREVLLNKL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223 + + V++N + + +++RKKL+ + +++ R +GY I W+ Sbjct: 184 WD-SESYVDDNTLSVNTTRVRKKLKTLHIENAIETIRSVGYRLHITWD 230 >gi|60679763|ref|YP_209907.1| putative two-component response regulator transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] gi|60491197|emb|CAH05945.1| putative two-component response regulator transcriptional regulatory protein [Bacteroides fragilis NCTC 9343] Length = 228 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 8/163 (4%) Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 EL + IRA + +P++ ++ S LD FD+G DD + KP RE+ AR+ + +R Sbjct: 62 ELCKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKRKL 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQ--GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V++ E + + D V+ G L +E +L Y++ N K V++ I Sbjct: 122 AVVTDVEEELNYADLSVNLLDKSVKRAGRDIKLSPKEYNLLVYMIENAEKVVSRMDIADK 181 Query: 177 IYGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ FD N ++ +I+ LRKK+ + +K +G+ Sbjct: 182 VWNTHFDTGT--NFIDVYINYLRKKIDRDFDTKLIHTKTGMGF 222 >gi|53724716|ref|YP_102097.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|121599835|ref|YP_993967.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|126449442|ref|YP_001079600.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|254203780|ref|ZP_04910140.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|52428139|gb|AAU48732.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|121228645|gb|ABM51163.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|126242312|gb|ABO05405.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|147745292|gb|EDK52372.1| DNA-binding response regulator [Burkholderia mallei FMH] Length = 247 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/173 (29%), Positives = 81/173 (46%), Gaps = 25/173 (14%) Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA +S +P++ ++ S+ + D G DD + KP E+ ARV A+ RR Sbjct: 60 LEVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR- 118 Query: 120 KVSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A GP V GR V L RE +LE L+ G+ V+K Q Sbjct: 119 -----GAGGGPTVVRHGLLSFDQVGRIAYANERVLELSARELGLLEVLLQRIGRLVSKEQ 173 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP----VDSKRFLGYSID 221 + + + E V N +E ++ +LRKK+ +P + + R LGY ++ Sbjct: 174 LVDHLCE-WGEEVSNNAIEVYVHRLRKKI------EPSGVRITTVRGLGYCLE 219 >gi|332669831|ref|YP_004452839.1| winged helix family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338869|gb|AEE45452.1| two component transcriptional regulator, winged helix family [Cellulomonas fimi ATCC 484] Length = 213 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 11/203 (5%) Query: 23 GVSLEGFN---SLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS-QVPLIGI 78 G+S EGF + + E LQ + D AI ++ ++ +RA + P++ + Sbjct: 15 GLSAEGFAVDVAHDGEAGLQLALEHDYDAIVLDIMLPRRNGYDVVTALRAQDVRTPVLLL 74 Query: 79 SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDG 137 S D D G DD + KP ++AR+ A+ RR +V G + + Sbjct: 75 SAKDGEYDVADGLDVGADDYLTKPFAFVVLVARLRALLRRPPQVRPAVLAVGDLVLDPAA 134 Query: 138 RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKL 197 R GE L RE +LEYLM + + V K ++ ++ E V NVVE ++ L Sbjct: 135 RTVTRAGEPVVLTVRELALLEYLMRHADRVVGKVELRDHVWEGTGEDV--NVVEVYVGYL 192 Query: 198 RKKLRNKLGFDPVDSKRFLGYSI 220 R+ KLG D V + R GY + Sbjct: 193 RR----KLGRDAVATVRGAGYRV 211 >gi|319938297|ref|ZP_08012694.1| two-component system response regulator [Coprobacillus sp. 29_1] gi|319806590|gb|EFW03248.1| two-component system response regulator [Coprobacillus sp. 29_1] Length = 224 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 3/156 (1%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-SNNR 125 ++ +P+I ++ L F G+DD V KP E+LARV I +R + S N Sbjct: 68 MKEFKDIPVIMLTAKSQSADKLRGFSLGIDDYVTKPFDPDELLARVKTILKRYSINSQNI 127 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 + + D + E LP ++ + L N + + Q+ I+G+ D Sbjct: 128 VQIQDVIFDGDKYEIRYHDETLHLPLKQFELAFELAKNPNQIFTREQLIEKIWGM-DYDG 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V+ HI ++R+ L + GF V + R LGY I+ Sbjct: 187 FDRTVDVHIKRIRENLGHLPGFKVV-TVRGLGYKIE 221 >gi|319948078|ref|ZP_08022248.1| response regulator receiver [Dietzia cinnamea P4] gi|319438251|gb|EFV93201.1| response regulator receiver [Dietzia cinnamea P4] Length = 192 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 13/153 (8%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R S ++ ++ TL G DD + KP RE++AR+ + RR + Sbjct: 17 VEVCRQLRTFSDAYVVMLTARTEEVDTLIGLSVGADDYMTKPFSPRELMARIQVMLRRPR 76 Query: 121 VSNN-RAET-----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 S R+ + G + + +GR+ V L R E +L L + G + Sbjct: 77 SSTALRSPSAASEHRELRRIGALAIDVEGREVTVDTTPVQLTRTEFDLLAALTRDPGLVL 136 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++TQ+ SAI+G D + ++V+ HI+ LR+KL Sbjct: 137 SRTQLISAIWG-PDWVGDTHLVDVHIAHLRRKL 168 >gi|312132711|ref|YP_004000050.1| protein [Bifidobacterium longum subsp. longum BBMN68] gi|311773672|gb|ADQ03160.1| Hypothetical protein BBMN68_440 [Bifidobacterium longum subsp. longum BBMN68] Length = 234 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 28/172 (16%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL------- 119 +R + P++ +S + + D+G DD V KP+ E+LAR+ A+ RR+ Sbjct: 66 VRGWTDAPILVVSGRTDAREKVAVLDAGADDYVTKPVSIDELLARIRALARRIPQKTETP 125 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V+ + + RV+ GR V+ L E ++LE L+ N G+ V + + Sbjct: 126 MVSFGNVTVDLSAHAVFRVYH-GRKVRVR-----LTPTEWKVLEILVRNAGRLVTRKDLL 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221 + I+G + + + ++S+LRKK+ + DP + +++ +GY +D Sbjct: 180 AGIWG-AEHVNDSGYLRLYVSQLRKKIED----DPSRPKYLKTEQGMGYRLD 226 >gi|307308836|ref|ZP_07588524.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|306900641|gb|EFN31253.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 225 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 4/132 (3%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D G DD + KP E ARV + RR + + G + + R G + Sbjct: 91 LDLGADDYLIKPFDIGEFEARVRVLLRRQAGLRASVVSYGNVSLDLTSRSFSSAGMPIEI 150 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 P RE +LE L GK VAK I ++ GL D+ + N +E ++S+LRK+L G Sbjct: 151 PARELGLLELLFMRAGKVVAKDAIVQSLTGL-DDDLSPNAIEQYVSRLRKRL-APFGL-T 207 Query: 210 VDSKRFLGYSID 221 V + R +GY +D Sbjct: 208 VRTARGIGYYLD 219 >gi|295704021|ref|YP_003597096.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294801680|gb|ADF38746.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 226 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/191 (22%), Positives = 90/191 (47%), Gaps = 13/191 (6%) Query: 28 GFNSLEFEE------WLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDY 81 GF ++FE +L + D+ ++ + E E+ + +R S +P+I ++ Sbjct: 25 GFTCIKFERGTEALRYLYEGNKADLMLLDIMM--PSEDGWEICQKVRKMSDLPVIMLTAR 82 Query: 82 PSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDP 140 + + G DD + KP E++AR++A+ RR LK N G + D Sbjct: 83 SQTLDVVKGLNMGADDYITKPFSEEELVARISAVLRRSLKEKNEITYKGLVWSKED-HVL 141 Query: 141 EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKK 200 + + + + +E ++ L+ + + ++ + ++G ++ + + ++SH+ +R K Sbjct: 142 QYKNQYIQVTPKEFELVGLLLQHLNRVFSRDDLLVLVWG-YEAEIGDRTIDSHVRNVRDK 200 Query: 201 LRNKLGFDPVD 211 LR K GF PVD Sbjct: 201 LR-KAGF-PVD 209 >gi|315506484|ref|YP_004085371.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|315413103|gb|ADU11220.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 238 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 8/119 (6%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR-----VFSDGRDPEVQGE 145 + G DD V KP RE++ R+ ++ RR +R TG +R +D R E G+ Sbjct: 99 LEVGADDYVTKPFSPRELVLRIRSVLRR-AAPQDRGPTGVLRDGDLTADTDRRVAERGGQ 157 Query: 146 VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK 204 L RE +L +L+AN G+ ++ ++ ++G +++ V H+ +LR+K+ ++ Sbjct: 158 PLSLTVREFDLLAFLLANPGRAWSRAELLDRVWGW--RFGDQSTVTVHVRRLREKIEDR 214 >gi|260665127|ref|ZP_05865977.1| DNA-binding response regulator [Lactobacillus jensenii SJ-7A-US] gi|260561181|gb|EEX27155.1| DNA-binding response regulator [Lactobacillus jensenii SJ-7A-US] Length = 223 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 4/113 (3%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG-EVFPL 149 D G DD + KP +E+LAR+ + RR + + N + +F D + E+ L Sbjct: 91 LDDGADDYLTKPFSLKELLARLRSKERR-EDNYNTKKMQLANLFLDVENQEISSRNSVRL 149 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR 202 +E +L+YL+ N+ K ++ IFS ++ D EN+V ++S LR+KL+ Sbjct: 150 STKETELLQYLLLNKDKFLSTQTIFSHVWK--DSEENENIVWIYVSYLREKLK 200 >gi|167566789|ref|ZP_02359705.1| DNA-binding heavy metal response regulator [Burkholderia oklahomensis EO147] gi|167573865|ref|ZP_02366739.1| DNA-binding heavy metal response regulator [Burkholderia oklahomensis C6786] Length = 230 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/222 (24%), Positives = 104/222 (46%), Gaps = 27/222 (12%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66 R L + G++ + DG+S G + L+ E + D++ ++ L G G V+ R Sbjct: 18 RGLTEAGFVCDWTQDGIS--GLHQLQTENY-------DLAILDVMLPGCDGWTVV---RE 65 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R + P++ ++ + + + G DD + KP E+LARV ++ RR +A Sbjct: 66 LRRTHRTPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRR-----GQA 120 Query: 127 ETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 P+ ++ R QG L +E +L LM +G+ + ++ I S I+ + Sbjct: 121 TDAPVLRVANLELDLIQRKARRQGNTILLTAKEFLLLWLLMRRQGEILPRSLIASQIWDI 180 Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + NVV++ I ++R K+ + + R +GY ++ Sbjct: 181 NFDS--DSNVVDAAIKRVRAKVDQDYEPKLIHTVRGMGYVLE 220 >gi|29376255|ref|NP_815409.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis V583] gi|227518892|ref|ZP_03948941.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX0104] gi|227553507|ref|ZP_03983556.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis HH22] gi|229549877|ref|ZP_04438602.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis ATCC 29200] gi|255972661|ref|ZP_05423247.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|256961795|ref|ZP_05565966.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|257086989|ref|ZP_05581350.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257419428|ref|ZP_05596422.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|293382858|ref|ZP_06628776.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis R712] gi|293389655|ref|ZP_06634110.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis S613] gi|312907671|ref|ZP_07766662.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312910288|ref|ZP_07769135.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312951633|ref|ZP_07770528.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|29343718|gb|AAO81479.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis V583] gi|44933850|gb|AAS49397.1| response regulator [Enterococcus faecalis] gi|227073683|gb|EEI11646.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX0104] gi|227177377|gb|EEI58349.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis HH22] gi|229304950|gb|EEN70946.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis ATCC 29200] gi|255963679|gb|EET96155.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|256952291|gb|EEU68923.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256995019|gb|EEU82321.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257161256|gb|EEU91216.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|291079523|gb|EFE16887.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis R712] gi|291081048|gb|EFE18011.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis S613] gi|310626699|gb|EFQ09982.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310630350|gb|EFQ13633.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|311289561|gb|EFQ68117.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|315027859|gb|EFT39791.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315144942|gb|EFT88958.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315147397|gb|EFT91413.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315152346|gb|EFT96362.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315158211|gb|EFU02228.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] gi|315162380|gb|EFU06397.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315168899|gb|EFU12916.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315576088|gb|EFU88279.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315580662|gb|EFU92853.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|323480862|gb|ADX80301.1| two-component response regulator protein, PhoR [Enterococcus faecalis 62] Length = 236 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 11/118 (9%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRA----------ETGPIRVFSDGRDPEVQ 143 G DD + KP RE+LAR+ AI+RRLK + G IRV + V+ Sbjct: 95 GADDYLTKPFSPREVLARMKAIFRRLKPTTTETLQEDTPKAPLVIGEIRVDEQNYEVFVR 154 Query: 144 GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + L +E +L Y M + + + + + I+ +D A + +V+ HIS LR K+ Sbjct: 155 NQPIELTPKEFELLVYFMKRKDRVINRETLLERIWQ-YDFAGQSRIVDVHISHLRDKI 211 >gi|85814041|emb|CAF31457.2| putative two-component system response regulator [Micromonospora echinospora] Length = 231 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 EL R++RA S VP+I + + D+G DD V KP ++ ARV A+ RR Sbjct: 62 ELLRMLRAVSPVPVIVATARDDETEIVRVLDAGADDYVVKPFTAAQLDARVRAVLRRAAS 121 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ G +RV R + G L RE +L +L A G+ V K ++ + + Sbjct: 122 VAGADDSALVVGGLRVDPRSRQVTLDGAPVELTPREFDLLHHLAARPGEVVTKRELLTDV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKL 201 + + ++ V+ H+S LR+KL Sbjct: 182 WQIPYGGADKT-VDVHLSWLRRKL 204 >gi|332522465|ref|ZP_08398717.1| putative response regulator protein GraR [Streptococcus porcinus str. Jelinkova 176] gi|332313729|gb|EGJ26714.1| putative response regulator protein GraR [Streptococcus porcinus str. Jelinkova 176] Length = 221 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 78/153 (50%), Gaps = 4/153 (2%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125 IR + P+I IS + + G DD + KP + A++ A RR+ + + + Sbjct: 69 IRKYLTTPIIFISSSNDEMDAVMALNMGGDDYITKPFSLTILDAKITAFLRRVNQFATDS 128 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 ++ DG + ++F P E +IL L+ N+ V+K +I A++ D+ + Sbjct: 129 LSYKGYQLHFDGSLTKNDWKIFLSP-TEHKILSLLLTNQETIVSKEKILKALWE-SDQFI 186 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++N + ++++LRKKL + + F+ + + R +GY Sbjct: 187 DQNTLNVNMTRLRKKLTD-IDFNYIHTVRGVGY 218 >gi|330875656|gb|EGH09805.1| DNA-binding response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 249 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE L L R +R+ S +P++ ++ + + G DD + KP RE++AR+ Sbjct: 71 LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 130 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165 I RR V + R++ F R V G V PL E R+L + Sbjct: 131 QTILRR--VRDERSDQRSTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 188 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 + +++ Q+ A G EA + + I L +LR KLG DP Sbjct: 189 RVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 227 >gi|328471931|gb|EGF42808.1| putative two component response regulator transcription regulator protein [Vibrio parahaemolyticus 10329] Length = 230 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 20/221 (9%) Query: 8 RALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELPRI 66 + L++ GY+ DG+ +G EE+ D+ ++ L G +VL R Sbjct: 18 KGLIESGYVVDLVHDGI--DGLYHATSEEY-------DLILLDIMLPKLDGWQVLNTLRS 68 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 H+ P+I ++ ++ + F+ G +D V KP E+LARV ++R + A Sbjct: 69 SGIHT--PVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHIAAQVVA 126 Query: 127 ETGPIRVFSDGRD-----PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL- 180 +RV D G+ L +E +LE LM G+ +++T I S ++ + Sbjct: 127 SPQTLRVADLELDMIKRVASRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIASLVWDMN 186 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + NV++ + +LR K+ + + R +GY ++ Sbjct: 187 FDS--DTNVIDVAVKRLRSKVDKPFDKPLIHTVRGMGYKLE 225 >gi|239942982|ref|ZP_04694919.1| two component transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239989442|ref|ZP_04710106.1| two component transcriptional regulator [Streptomyces roseosporus NRRL 11379] Length = 236 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 12/179 (6%) Query: 34 FEEWLQSSAREDVSAIEAF---------LIGKGEKVLELPRIIRAHSQVPLIGISDYPSL 84 FE + + V+ +E F ++ G + R+ + P++ ++ + Sbjct: 26 FETAVAGTGGAAVAQVETFRPHLIVMDVMLPDGSGIDATRRLRGSGCLAPVVFLTARDAT 85 Query: 85 QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET--GPIRVFSDGRDPEV 142 + + G DD V KP E++AR+ A+ RR RA+ + + D + Sbjct: 86 EDKIAGLTVGGDDYVTKPFSLEELIARIRAVLRRTAHPAERAKVTFADLEIDDDAHEVRR 145 Query: 143 QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 G L E ++L YL+A+ G+ ++K QI ++ +D + VV+++IS LR+K+ Sbjct: 146 HGVPVDLTPTEFKLLRYLVAHAGRVLSKRQILDHVWE-YDFGGSDAVVQTYISYLRRKI 203 >gi|229014033|ref|ZP_04171157.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228747289|gb|EEL97168.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 242 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/208 (24%), Positives = 97/208 (46%), Gaps = 12/208 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ ++G E +++ EE L+ + DV I ++ + Sbjct: 15 ILIVDDEKEIRKLIAIYLKNEG--YEVLQAVDGEEGLEIVKKRDVHLIVLDIMMPKIDGI 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-LK 120 + +R +++P+I +S + +G DD V KP + E++AR+ + RR +K Sbjct: 73 HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132 Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +S E G I++ R + E L RE +LE L N+G + QI+ Sbjct: 133 MSGTSVKDESVFEVGDIKINIVTRQVIIANEEVKLTPREFEVLELLARNQGMVLNAAQIY 192 Query: 175 SAIYGLFDEAVE-ENVVESHISKLRKKL 201 ++ ++A + +N V HI K+R+K+ Sbjct: 193 ERVWK--EQAFQSDNTVMVHIRKIREKI 218 >gi|213691891|ref|YP_002322477.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523352|gb|ACJ52099.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 221 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 3/126 (2%) Query: 94 GVDDVVNKPIHHREILARVAAIYRRLKVSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRR 152 G DD + KP E+ ARV A RR + + + T I++ ++ V PL + Sbjct: 93 GADDYLTKPFRIAELRARVHAHLRREQRERHVSLTFDRIKIDLSAKELLVDNIPVPLTKS 152 Query: 153 ERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDS 212 E I EYL NRG+ +K QI+ A++ + + + + +HI +R K G P+ + Sbjct: 153 EYLICEYLAGNRGQVFSKKQIYEAVFPFYGYG-DGSTISTHIKNIRSKFEEA-GVQPIVT 210 Query: 213 KRFLGY 218 +GY Sbjct: 211 VWGIGY 216 >gi|160873420|ref|YP_001552736.1| two component transcriptional regulator [Shewanella baltica OS195] gi|160858942|gb|ABX47476.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|315265649|gb|ADT92502.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 225 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/224 (23%), Positives = 108/224 (48%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D A D + F + G ++E + L +S++ D+ ++ L G K+ Sbjct: 3 ILLVEDDATTIDYIVKGFLEQGHNIETASDGHQGLSLATSSQYDLVILDRMLPQLDGLKL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 L R +Q P++ +S + + +G DD + KP E+L R + R Sbjct: 63 LAALRA--TGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMHRGQ 120 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + V+ + G +++ R+ + G+ L +E ++L+YLM + + +++T +F A+ Sbjct: 121 SVPVTTDLV-VGGLKMELLTRNVTLDGQELLLQPKEFQLLKYLMEHANQVISRTLLFEAV 179 Query: 178 YGL-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + FD NV++ HI+KLR+K + +++ R GY + Sbjct: 180 WDYHFDP--RTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 221 >gi|27467345|ref|NP_763982.1| two-component response regulator [Staphylococcus epidermidis ATCC 12228] gi|57866221|ref|YP_187908.1| DNA-binding response regulator [Staphylococcus epidermidis RP62A] gi|251810084|ref|ZP_04824557.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282874885|ref|ZP_06283760.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293368109|ref|ZP_06614741.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|81675285|sp|Q5HR81|GRAR_STAEQ RecName: Full=Response regulator protein graR; AltName: Full=Glycopeptide resistance-associated protein R gi|81843063|sp|Q8CQ37|GRAR_STAES RecName: Full=Response regulator protein graR; AltName: Full=Glycopeptide resistance-associated protein R gi|27314888|gb|AAO04024.1|AE016745_123 two-component response regulator [Staphylococcus epidermidis ATCC 12228] gi|57636879|gb|AAW53667.1| DNA-binding response regulator [Staphylococcus epidermidis RP62A] gi|251806428|gb|EES59085.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281296213|gb|EFA88732.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291317799|gb|EFE58213.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329725250|gb|EGG61738.1| response regulator protein GraR [Staphylococcus epidermidis VCU144] gi|329733351|gb|EGG69686.1| response regulator protein GraR [Staphylococcus epidermidis VCU045] gi|329734040|gb|EGG70359.1| response regulator protein GraR [Staphylococcus epidermidis VCU028] Length = 224 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 92/204 (45%), Gaps = 21/204 (10%) Query: 16 IALFGDDGVSLEGFNSLEFEEW-LQSSAREDVS-AIEAFLIGKGEKVL---ELP------ 64 I L DD + E E+W ED S +E F E V+ +LP Sbjct: 3 ILLVEDDNTLFQELKK-ELEQWDFNVVGVEDFSHVMETFETFNPEIVILDVQLPKYDGFY 61 Query: 65 --RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 R +R S VP++ +S + + + G DD + KP + ++A++ AIYRR+ Sbjct: 62 WCRKMRQQSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEF 121 Query: 121 -VSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V R + +D + + L + E ILE L+ R + V + + +A++ Sbjct: 122 GVEEKRTLSWQDATVDLSKDSIQKDDKTIFLSKTEMIILEMLINKRNQIVTRDTLITALW 181 Query: 179 GLFDEA-VEENVVESHISKLRKKL 201 DEA V +N + ++++LRKKL Sbjct: 182 D--DEAFVSDNTLTVNVNRLRKKL 203 >gi|325293818|ref|YP_004279682.1| two component response regulator [Agrobacterium sp. H13-3] gi|325061671|gb|ADY65362.1| two component response regulator [Agrobacterium sp. H13-3] Length = 232 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 4/132 (3%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRR-LKVSNNRAETGPIRVFSDGRDPEVQGEVFPL 149 D G DD + KP E ARV + RR + ++ G + R G + Sbjct: 97 LDLGADDYMIKPFDITEFEARVRVLLRRNAGLRSSTLSFGKVLFDLTSRTFSADGRPLDI 156 Query: 150 PRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 P RE +LE L GK VAK I ++ G FD+ + N +E ++S+LR++L G Sbjct: 157 PAREVALLEVLFMRAGKVVAKEAIVQSLTG-FDDEISGNAIEQYVSRLRRRLAPH-GL-T 213 Query: 210 VDSKRFLGYSID 221 V + R +GY ++ Sbjct: 214 VKTARGIGYYLE 225 >gi|224543110|ref|ZP_03683649.1| hypothetical protein CATMIT_02310 [Catenibacterium mitsuokai DSM 15897] gi|224523897|gb|EEF93002.1| hypothetical protein CATMIT_02310 [Catenibacterium mitsuokai DSM 15897] Length = 234 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 7/165 (4%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S P++ +S + G DD V KP +EI RV A RR + Sbjct: 65 EVCKKIREISHCPILFLSSKNDELDKILGLAVGGDDYVTKPFSPKEIAYRVKAQLRRAEY 124 Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + G + + +DG + L RE IL+YL N G+ +++ +++ Sbjct: 125 KYNPKQDFSVRIGELMIDADGCRVMKNNKEIELTAREFEILQYLAQNVGRVISRERLYET 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G D +N + HI LR+KL N + + + LGY + Sbjct: 185 VWG-EDSFGCDNTIMVHIRHLREKLEDNPTAPQYIITMKGLGYKL 228 >gi|134093754|ref|YP_001098829.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] gi|133737657|emb|CAL60702.1| Phosphate regulon transcriptional regulatory protein PhoB [Herminiimonas arsenicoxydans] Length = 229 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 7/167 (4%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G ++L R R +P+I ++ + + ++G DD V KP RE++ARV + Sbjct: 64 GLQLLSRVRESRQFRGLPIIMLTAKSMEEDKVTGLENGADDYVTKPFSPRELIARVTVLL 123 Query: 117 RRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + KV + ET GPIR+ R V + + E ++L+YL+A+ ++ Q+ Sbjct: 124 KH-KVPEHAQETMKAGPIRLDPASRMVSVGTKNITIGHAEFKLLKYLLAHPNHVYSRDQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G A++E V+ ++ +LRK L G + + R +GY + Sbjct: 183 IDRVWGRHI-AIDERTVDVNVLRLRKVLGE--GRYLIKTVRGVGYML 226 >gi|159044087|ref|YP_001532881.1| phosphate regulon transcriptional regulatory protein [Dinoroseobacter shibae DFL 12] gi|157911847|gb|ABV93280.1| phosphate regulon transcriptional regulatory protein [Dinoroseobacter shibae DFL 12] Length = 228 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 3/150 (2%) Query: 73 VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIR 132 +P+I +S + ++G DD V KP E++ARV A RR++ + + Sbjct: 79 IPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRRVRPATVGQQLRYDD 138 Query: 133 VFSDGRDPEV--QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVV 190 + D V + L E R+L M G+ ++ Q+ ++G D V+ V Sbjct: 139 ILLDAESHRVFRDDQALKLGPTEFRLLATFMEKPGRVWSREQLLDRVWG-RDIYVDTRTV 197 Query: 191 ESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + HI +LRK L G DPV + R GY++ Sbjct: 198 DVHIGRLRKALCQHGGTDPVRTVRGAGYAL 227 >gi|150017893|ref|YP_001310147.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904358|gb|ABR35191.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 238 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 17/151 (11%) Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ I+R S+VP+I ++ ++ + G DD + KP RE++AR+ AI+RRL Sbjct: 65 EICSIVRKRSRVPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRRLN- 123 Query: 122 SNNRAETGPIR---VFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E P+ F+D ++ GE L R+ +IL L+ K + Sbjct: 124 ----EEVVPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTFTR 179 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ S G + + N V++H+ +R+K+ Sbjct: 180 EELISTALGDDYDGYDRN-VDTHVKNIRQKI 209 >gi|314934943|ref|ZP_07842302.1| DNA-binding response regulator YycF [Staphylococcus caprae C87] gi|313652873|gb|EFS16636.1| DNA-binding response regulator YycF [Staphylococcus caprae C87] Length = 233 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 18/175 (10%) Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 G +E+ R +R ++P+I ++ S + + G DD V KP RE++ARV A Sbjct: 58 GNDGMEVCREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANL 117 Query: 117 RR--------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 RR + + N I ++ D + +GE L RE + YL + G+ + Sbjct: 118 RRHYSQPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVM 177 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGY 218 + + ++G +D + V+ I +LR+K+ + DP + ++R +GY Sbjct: 178 TREHLLQTVWG-YDYFGDVRTVDVTIRRLREKIED----DPSHPEYIVTRRGVGY 227 >gi|300853321|ref|YP_003778305.1| putative response regulator [Clostridium ljungdahlii DSM 13528] gi|300433436|gb|ADK13203.1| predicted response regulator [Clostridium ljungdahlii DSM 13528] Length = 230 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 67/117 (57%), Gaps = 6/117 (5%) Query: 91 FDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAE--TGPIRVFS--DGRDPEVQGEV 146 D G DD + KP +++++ A+ RR N + +G I VFS D + + + E+ Sbjct: 91 LDMGADDYIAKPFSLMVLMSKINALLRRNSNKNQSKKIVSGDI-VFSITDMKVLKNEEEL 149 Query: 147 FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN 203 F L + E ++L+YLM N G+ + K Q+ + ++ + + V++N + +I +LR+K+ + Sbjct: 150 F-LSKTEIKLLKYLMDNAGQIITKDQLLNKLWDIDNTFVDDNTIAVNIRRLREKIED 205 >gi|300702865|ref|YP_003744466.1| response regulator, chey family [Ralstonia solanacearum CFBP2957] gi|299070527|emb|CBJ41822.1| putative response regulator, CheY family [Ralstonia solanacearum CFBP2957] Length = 235 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 28/222 (12%) Query: 8 RALVKDGYIALFGDDGVSLEGF-NSLEFEEWLQSS--AREDVSAIEAFLIGKGEKVLELP 64 RAL + ++ DG++ E F S EF+ + R+D A+ A + + ++ Sbjct: 18 RALAQSSFVVERAADGLAAEAFLASGEFDAVVLDLRLPRKDGFAVLADMRARDDRT---- 73 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 P++ ++ +L + ++G DD + KP E+ AR+ A+ RR S Sbjct: 74 ---------PVLILTAQGALDERVRGLNAGADDFLTKPFALTELEARLMALIRR---SRG 121 Query: 125 RA----ETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 RA GP+ F GR + GE L RE L L+ G+ ++K +F ++ Sbjct: 122 RAFPRLRCGPLE-FDTGRKAFLLAGEALSLTPREHAALSALLHKTGQPISKVHLFDKVFN 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 L D + VE + +LRKKL G V + R LGY ++ Sbjct: 181 L-DSDSSPDAVEVVVHRLRKKLAGS-GVQIV-TVRGLGYLLE 219 >gi|292488960|ref|YP_003531847.1| sensory transduction protein regX3 [Erwinia amylovora CFBP1430] gi|292900097|ref|YP_003539466.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291199945|emb|CBJ47069.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291554394|emb|CBA21833.1| Sensory transduction protein regX3 [Erwinia amylovora CFBP1430] gi|312173122|emb|CBX81377.1| Sensory transduction protein regX3 [Erwinia amylovora ATCC BAA-2158] Length = 226 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 105/222 (47%), Gaps = 27/222 (12%) Query: 10 LVKDGYIA---LFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRI 66 L+ +G+ A L G GV +G S ++ + D+S I+ R Sbjct: 20 LIAEGFAASLVLTGKAGV--DGALSGDYHAMILDIMLPDMSGIDVL------------RQ 65 Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK---VSN 123 +R H ++P+I ++ + + G DD + KP + RE++AR+ A+ RR++ V+ Sbjct: 66 VRQHGRLPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRVEEQPVAK 125 Query: 124 NRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E G +R+ R E Q + F L E +L+ L+ + + V+K ++ G Sbjct: 126 KNKEVIVWGELRLNPATRISEWQNKPFDLTASEFNLLDLLLRSAERVVSKDELSEKGLGR 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSI 220 EA + + V+ HIS +R+KL L D +++ R +GY I Sbjct: 186 PREAYDRS-VDVHISNIRQKLAG-LTNDTIAIETVRSIGYRI 225 >gi|288961886|ref|YP_003452196.1| DNA-binding two-component response regulator [Azospirillum sp. B510] gi|288914166|dbj|BAI75652.1| DNA-binding two-component response regulator [Azospirillum sp. B510] Length = 230 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 63/238 (26%), Positives = 103/238 (43%), Gaps = 34/238 (14%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LIDD ++D I F + EGF +E + +Q A + + L+ G + Sbjct: 4 ILLIDDDPHIRD--IVRFA---LKREGFAVVEAGDGVQGLALAQADSPDLILLDIGMPEI 58 Query: 62 ---ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R +R S+VP+I +S + + G DD V KP RE+ ARV A+ RR Sbjct: 59 DGTEVCRRLRRESRVPIIFLSSRDDEIDRILGLELGGDDYVTKPFSPRELTARVKAVLRR 118 Query: 119 ---------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163 L+ + R + +R F D + + F L R +A+ Sbjct: 119 VVPPEPPVPEGPAPVLRNNRLRLDLDGVRAFWDEMEVVLTATEFCLLR--------TLAD 170 Query: 164 R-GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 R GK ++ + Y + V + V+SHI ++R K +G PV++ LGY + Sbjct: 171 RPGKVFSRDALMDGTYAT-ERYVADRTVDSHIRRVRAKF-QAVGGAPVETVHGLGYKL 226 >gi|284929471|ref|YP_003421993.1| winged helix family two component transcriptional regulator [cyanobacterium UCYN-A] gi|284809915|gb|ADB95612.1| two component transcriptional regulator, winged helix family [cyanobacterium UCYN-A] Length = 243 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRA 126 +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR++ +N Sbjct: 71 LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEKGSNPG 130 Query: 127 -------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ ++ R E L E +LE L+ G+ ++++I ++G Sbjct: 131 IPNSGVISIASVKIDTNKRQVYKGDERIRLTGMEFSLLELLVGCSGEPFSRSEILQEVWG 190 Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203 E V+ VV+ HIS+LR KL + Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215 >gi|254495848|ref|ZP_05108760.1| DNA-binding response regulator [Legionella drancourtii LLAP12] gi|254355005|gb|EET13628.1| DNA-binding response regulator [Legionella drancourtii LLAP12] Length = 247 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 51/212 (24%), Positives = 102/212 (48%), Gaps = 15/212 (7%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++ DD+ +V+ L +D + N L ++ L+ + D+ ++ L G Sbjct: 13 ILIIDDDQEIVQLINDYLIKNDFRTTWALNGLNIKQLLRDN-NFDLIILDIML--PGIDG 69 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+L ++IR +P+I +S S+ + + G DD ++KP RE+LARV A RR + Sbjct: 70 LDLCQMIRQTHTMPIIMLSAANSIADRVAGLELGADDYISKPFSARELLARVKAQLRRTQ 129 Query: 121 --VSNNRAETGPIR-----VFSDGRDP----EVQGEVFPLPRRERRILEYLMANRGKRVA 169 +S R + P++ ++ R+ + PL +RE +L + + G+ + Sbjct: 130 GDLSKERKKLSPLQKIHFDMWILDRNTHSLIDRDATAIPLSQREYEMLLIFLEHPGRILN 189 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ +Y D ++ ++ I +LRKK+ Sbjct: 190 RDQLMDLLYD-KDCDSQDRTIDVLIGRLRKKI 220 >gi|239624688|ref|ZP_04667719.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239521074|gb|EEQ60940.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 234 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 92/213 (43%), Gaps = 17/213 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D DG + F + L+ A+ED+ + ++ G L Sbjct: 6 ILVVDDEKEIADLIEIYLVSDGYKV--FKAENAARGLEILAKEDIHLVLLDIMMPGMNGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR ++ +P+I +S + + +G DD V KP + E+ ARV + RR Sbjct: 64 EMCKKIRENNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSHLRRYTQ 123 Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +NN + + D V E L E IL L +N GK + Sbjct: 124 LNPNSASQDKANNEITIKGMIINKDNHKVIVDDEEIKLTPIEFDILYLLASNPGKVFSTD 183 Query: 172 QIFSAIYGLFDEAVEE--NVVESHISKLRKKLR 202 +IF ++ +E V E N V HI +LR K++ Sbjct: 184 EIFERVW---NEKVYEANNTVMVHIRRLRGKMK 213 >gi|167552258|ref|ZP_02346011.1| DNA-binding response regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323070|gb|EDZ10909.1| DNA-binding response regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 222 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/227 (23%), Positives = 98/227 (43%), Gaps = 21/227 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ G I +G + +G ++ E S + ++ L + + + Sbjct: 3 ILIVEDDTLLLQGLILTAQTEGYACDGVSTARAAEHSLESGHYSLMVLDLGLPDE-DGLH 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 L RI + +P++ ++ +L + D G DD + KP E+ AR+ A+ RR Sbjct: 62 FLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKPFALEELHARIRALLRRHNN 121 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 L V N G + + DG++ L +E +L LM G V + + Sbjct: 122 QGESELTVGNLTLNIGRHQAWRDGQE-------LTLTPKEYALLSRLMLKAGSPVHREIL 174 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ IY +D N +E HI LR+K+G + + R GY + Sbjct: 175 YNDIYN-WDNEPSTNTLEVHI----HNLRDKVGKSRIRTVRGFGYML 216 >gi|150015325|ref|YP_001307579.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901790|gb|ABR32623.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 231 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 18/166 (10%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KVSNNR 125 +RA S +P+I I+ + + G DD + KPI E+ ARVA+ RR K + ++ Sbjct: 66 VRAISTIPIICITAMGNDSDKVLALGLGADDYLVKPISPIELSARVASNLRRCYKYAEHK 125 Query: 126 ---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 TG +++F++ + L +E +IL+ L++N GK K QI+ ++ + Sbjct: 126 DIIYSTGELKLFTETFEVYKGNRKIDLNPKEFKILKLLVSNLGKVFTKKQIYEEVW---E 182 Query: 183 EAV--EENVVESHISKLRKKLRNKLGFDP-----VDSKRFLGYSID 221 EA + N + H+S +R+K+ + DP + + R +GY I+ Sbjct: 183 EAYFGDSNNIMVHLSHIREKIED----DPKNPIYIKTIRGIGYKIE 224 >gi|126651967|ref|ZP_01724159.1| two-component response regulator [Bacillus sp. B14905] gi|126591236|gb|EAZ85345.1| two-component response regulator [Bacillus sp. B14905] Length = 237 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 23/222 (10%) Query: 10 LVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRA 69 L+K+GY + DG E +E E+ D+ ++ L + +E+ R IR Sbjct: 22 LIKEGYKVICAYDGD--EALKKVEEEQ-------PDLMLLDIMLPKRDG--MEVCREIRK 70 Query: 70 HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-------- 121 P+I ++ S + + G DD V KP RE++ARV A RRL+V Sbjct: 71 KYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLQVAAPAAEEA 130 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N G + + D + E L RE +L YL + G+ + + + ++G Sbjct: 131 EEESNEIVVGSLVIQPDAYLVMKRDEAIELTHREFELLHYLGKHIGQVMTREHLLQTVWG 190 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +D + V+ I +LR+K+ + + ++R +GY + Sbjct: 191 -YDYFGDVRTVDVTIRRLREKIEDNPSHPAWIVTRRGVGYYL 231 >gi|16118480|gb|AAL14442.1|AF370885_4 AdeR response regulator [Acinetobacter baumannii] Length = 228 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 10/144 (6%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL----KVS 122 IR +Q P+I ++ + G DD V KP + E++ARV A+ RR KV+ Sbjct: 78 IRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQFANKVT 137 Query: 123 NNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N I + +D + E + L E +I+ +++ K + ++ + + Sbjct: 138 NKNKLYKNIEIDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMN--H 195 Query: 179 GLFDEAVEENVVESHISKLRKKLR 202 + D E V+SH+SKLRKKL+ Sbjct: 196 CMNDSDALERTVDSHVSKLRKKLK 219 >gi|332709113|ref|ZP_08429081.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332352119|gb|EGJ31691.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 242 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-KV---- 121 +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR KV Sbjct: 71 LRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRFDKVGAAG 130 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ G I++ ++ R E L E +LE L+ G+ ++++I ++G Sbjct: 131 IPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVRRSGEPFSRSEILQEVWG 190 Query: 180 LFDE-AVEENVVESHISKLRKKLRN 203 E V+ VV+ HIS+LR KL + Sbjct: 191 YTPERHVDTRVVDVHISRLRAKLED 215 >gi|325845482|ref|ZP_08168773.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Turicibacter sp. HGF1] gi|325488501|gb|EGC90919.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Turicibacter sp. HGF1] Length = 233 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 18/153 (11%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LEL R +R + P+I +S TL + G DD + KP E++ARV A RR K Sbjct: 62 LELCRRVRDQLKAPIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHLRREK 121 Query: 121 VSNNRAETGPIRVFSD-----------GRDPEVQGEV-FPLPRRERRILEYLMANRGKRV 168 R + I D R + EV L RE ++ +Y + N G+ + Sbjct: 122 ----RHQMNAIESLQDVLPFDRFKLYLNRYEVFKDEVNIDLSPREFQLFQYFVENSGRVL 177 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 ++ QIF AI+G + + V +I LR+KL Sbjct: 178 SREQIFDAIWG--ENYGDIGTVAVNIKNLRQKL 208 >gi|310829043|ref|YP_003961400.1| hypothetical protein ELI_3478 [Eubacterium limosum KIST612] gi|308740777|gb|ADO38437.1| hypothetical protein ELI_3478 [Eubacterium limosum KIST612] Length = 220 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/161 (26%), Positives = 85/161 (52%), Gaps = 5/161 (3%) Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I ++ S L + G DD + KP + + +LAR+A++ +R S Sbjct: 62 ICREIRKQSDVPIIIVTSRDSEFDELMSMNLGADDYITKPYNTQILLARIASVLKRANPS 121 Query: 123 NNRAETGPIRVFSDGRDPEVQGEV--FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + D +Q + L + E IL L++++ + V++ I +A++ Sbjct: 122 SGSTTMSHNGLTLDLSRSVIQSAIGETELTKNEVGILRLLLSHKNEIVSREAIMNALWQ- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 D V++N + +I++LR+K+ +++G D + +KR GY + Sbjct: 181 SDAFVDDNTLTVNINRLRRKI-SEIGLKDYLVTKRGQGYMV 220 >gi|289628083|ref|ZP_06461037.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646706|ref|ZP_06478049.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. aesculi str. 2250] gi|330867466|gb|EGH02175.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 267 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 14/178 (7%) Query: 39 QSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV 98 Q+ E + L+ GE L L R +R+ S +P++ ++ + + G DD Sbjct: 75 QALTEETFDVVVLDLMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDY 134 Query: 99 VNKPIHHREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPR 151 + KP RE++AR+ I RR V + R++ F R V G V PL Sbjct: 135 MAKPFEPRELVARIQTILRR--VRDERSDQRTTVRFDAWRLNSVLRQLTAADGLVVPLSN 192 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 E R+L + + +++ Q+ A G EA + + I L +LR KLG DP Sbjct: 193 AEFRLLRVFLERPHRVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 245 >gi|282882390|ref|ZP_06291018.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B] gi|281297811|gb|EFA90279.1| regulatory protein VanR [Peptoniphilus lacrimalis 315-B] Length = 227 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 10/144 (6%) Query: 67 IRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +RA + +P+I I+ +T FD G DD + KP ++L RV A RR + N+ Sbjct: 66 MRAKNFNMPVIIITAKIDEKTKFYTFDIGADDFITKPFEKADLLNRVKANIRRYRHLNSN 125 Query: 126 AETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 I +++ D ++GE + E IL+ L+ N K +K ++ +++ Sbjct: 126 MSKNSILEFKNLKLYEDENRILIKGEELKVTPIEFEILKILLKNPNKIFSKENLYRSVWN 185 Query: 180 LFDEA-VEENVVESHISKLRKKLR 202 DE E++ + HIS LR K++ Sbjct: 186 --DEYFFEDDTINVHISNLRSKIK 207 >gi|213968160|ref|ZP_03396305.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] gi|302058487|ref|ZP_07250028.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. tomato K40] gi|213927140|gb|EEB60690.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] Length = 249 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 74/164 (45%), Gaps = 14/164 (8%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ GE L L R +R+ S +P++ ++ + + G DD + KP RE++AR+ Sbjct: 71 LMLPGEDGLSLCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARI 130 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRG 165 I RR V + R++ F R V G V PL E R+L + Sbjct: 131 QTILRR--VRDERSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPH 188 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP 209 + +++ Q+ A G EA + + I L +LR KLG DP Sbjct: 189 RVLSREQLLDAARGRSIEAFDRS-----IDLLVSRLRQKLGDDP 227 >gi|254432325|ref|ZP_05046028.1| DNA-binding response regulator [Cyanobium sp. PCC 7001] gi|197626778|gb|EDY39337.1| DNA-binding response regulator [Cyanobium sp. PCC 7001] Length = 253 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 12/158 (7%) Query: 67 IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK------ 120 +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR++ Sbjct: 79 LRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEKEQVAG 138 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N+ T G +R+ ++ R E L E +LE L++ G+ ++ +I ++G Sbjct: 139 IPNSGVITVGDLRIDTNKRQVYRGDERIRLTGMEFSLLELLVSRSGEPFSRGEILKEVWG 198 Query: 180 LFDE-AVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 E V+ VV+ HIS+LR KL + DP + + L Sbjct: 199 YTPERHVDTRVVDVHISRLRSKLED----DPANPELIL 232 >gi|206969728|ref|ZP_03230682.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206735416|gb|EDZ52584.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 230 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 7/149 (4%) Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRL 119 LE+ RIIR S VP++ +S + G DD + KP E+ ARV A I R Sbjct: 62 LEVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRST 121 Query: 120 KVSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K S I++ DP E G+ L +E IL+ + N+ + K QI+ Sbjct: 122 KYSATETIEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN 203 + ++ + ++NV+ H+ +LR+K+ + Sbjct: 182 TLVWN-EEYYGDDNVINVHMRRLREKIES 209 >gi|152971070|ref|YP_001336179.1| DNA-binding transcriptional regulator BaeR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955919|gb|ABR77949.1| response regulator in two-component regulatory system with BaeS (OmpR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 240 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 70/152 (46%), Gaps = 4/152 (2%) Query: 53 LIGKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 L+ G L L R IR S VP++ ++ L + G DD + KP RE++ARV Sbjct: 62 LMLPGTDGLTLCREIRRFSDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARV 121 Query: 113 AAIYRRLKVSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 I RR K + P+ V + ++ L E R+L+ L GK + Sbjct: 122 KTILRRCKPQRDLQALDARSPLIVDESRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVFS 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + Q+ + +Y + V + ++SHI LR+KL Sbjct: 182 REQLLNHLYDDY-RVVTDRTIDSHIKNLRRKL 212 >gi|15839123|ref|NP_299811.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c] gi|28199786|ref|NP_780100.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|182682538|ref|YP_001830698.1| two component transcriptional regulator [Xylella fastidiosa M23] gi|9107741|gb|AAF85331.1|AE004060_6 two-component system, regulatory protein [Xylella fastidiosa 9a5c] gi|28057907|gb|AAO29749.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|182632648|gb|ACB93424.1| two component transcriptional regulator, winged helix family [Xylella fastidiosa M23] gi|307578816|gb|ADN62785.1| two component transcriptional regulator [Xylella fastidiosa subsp. fastidiosa GB514] Length = 225 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 5/167 (2%) Query: 57 GEKVLELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G +E+ R +R A Q P++ ++ SL L FDSG DD + KP +E+ R+ A Sbjct: 56 GMDGIEVCRKLRNEARKQTPVLMLTARDSLDNKLTGFDSGADDYLIKPFALQEVEVRLNA 115 Query: 115 IYRRLKVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RR K R ETG + D + +G++ L +IL+ LM V + + Sbjct: 116 LSRRGKGLQTRVLETGDLEYNLDTLEVRRRGKLLQLNPTGLKILQALMEATPAVVTRQDL 175 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G +E + + + HI LR + + ++ +GY I Sbjct: 176 ETRVWG--EELPDSDSLRVHIHGLRAVVDKPFDVPLIQTRHGIGYRI 220 >gi|15896754|ref|NP_350103.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15026610|gb|AAK81443.1|AE007848_7 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325510923|gb|ADZ22559.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 230 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 94/213 (44%), Gaps = 20/213 (9%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEF---EEWLQSSAREDVSAIEAFLIGK